BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (245 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040837|gb|ACT57633.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/245 (100%), Positives = 245/245 (100%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY Sbjct: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT Sbjct: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK Sbjct: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI Sbjct: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 Query: 241 CGDWY 245 CGDWY Sbjct: 241 CGDWY 245 >gi|315122545|ref|YP_004063034.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495947|gb|ADR52546.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 254 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 178/245 (72%), Positives = 211/245 (86%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK+H LKRLFV+F L K QGKAS QYHYLAHVLRMKE + +L+FNG+DGEW+S ISY Sbjct: 1 MKMHPPLKRLFVNFSLQPKAQGKASDAQYHYLAHVLRMKEKEKVLIFNGEDGEWISTISY 60 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + KSI F VE+Q+R+QTK SD+ YIFSPIKTNRLDYMIQKSVEMG+ AIRPVITRYTQNT Sbjct: 61 IKKSISFNVEHQTRTQTKPSDLHYIFSPIKTNRLDYMIQKSVEMGVSAIRPVITRYTQNT 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 H N++R+RTY ISAAEQC+I++LP I+PP TL+ LL++WD N IVFADETC ENS K Sbjct: 121 HCNVNRMRTYAISAAEQCNIISLPSIHPPITLDTLLEDWDQNRHIVFADETCIHENS--K 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + AIAHI ++A+LIGPEGG+H +EKE LHSLPFVTP+SLGPRILR+DTAAVAA+ALVQ+ Sbjct: 179 IQAIAHIVHMAVLIGPEGGFHPKEKEKLHSLPFVTPISLGPRILRADTAAVAAIALVQST 238 Query: 241 CGDWY 245 CGDWY Sbjct: 239 CGDWY 243 >gi|254720129|ref|ZP_05181940.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. 83/13] Length = 248 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 116/245 (47%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTDRIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|319405184|emb|CBI78789.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 247 Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 125/247 (50%), Positives = 158/247 (63%), Gaps = 6/247 (2%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + LKRLFV L + + G Q YL HVLRMKEG ILLFNG+DGEWL+K+ + Sbjct: 1 MRANYKLKRLFVRQLLALNEEIVIEGQQASYLVHVLRMKEGTEILLFNGQDGEWLAKLIF 60 Query: 61 VGKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K I ++ +Q R QT SD+ Y F+P+K RLDYMIQK+VEMG+ + PVIT++TQ Sbjct: 61 IKKKIVVARLIHQERPQTTHSDLFYCFAPLKHMRLDYMIQKAVEMGVSVLYPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--S 177 T NM R+ I A+EQC IL+LP P +LE L+NWD + F DE S N S Sbjct: 121 TRINMARIEANIIEASEQCGILSLPKCAPAVSLETFLENWDKTRALFFCDELNESYNPIS 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L K H + +LIGPEGG+ EE+ L PFV +SLGPRILR+DTAAVAA+ LV Sbjct: 181 LFKKHGTNPL---GVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLV 237 Query: 238 QAICGDW 244 A GDW Sbjct: 238 NATMGDW 244 >gi|265985135|ref|ZP_06097870.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306839033|ref|ZP_07471853.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|264663727|gb|EEZ33988.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306405856|gb|EFM62115.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 242 Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 156/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ D Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQAVLGDW 238 >gi|49473945|ref|YP_031987.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse] gi|49239448|emb|CAF25798.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse] Length = 244 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 118/247 (47%), Positives = 155/247 (62%), Gaps = 6/247 (2%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I+ LKRLF+ PL + + K G + YL HVLRM+EG ILLFNG+DGEWL+K+ Sbjct: 1 MHINYKLKRLFIRQPLVLNEEIKIEGQKASYLIHVLRMQEGAEILLFNGQDGEWLAKLIT 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + K+ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 IKKRFVVVKLIHQERLQTAPSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T N R+ + A+EQC IL+LP P +L LL WD + F DE N L Sbjct: 121 TRINRTRMEANVVEASEQCGILSLPECVPAVSLVELLACWDETQPLFFCDEAHKLHNPLP 180 Query: 180 --KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 K H + +P V LIGPEGG+ EE+ L FV P+ LGPRILR+DTAAV A+AL+ Sbjct: 181 LLKKHEMT-VPGV--LIGPEGGFSKEERSFLKKHSFVIPIPLGPRILRADTAAVVALALL 237 Query: 238 QAICGDW 244 A GDW Sbjct: 238 NATVGDW 244 >gi|325292039|ref|YP_004277903.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3] gi|325059892|gb|ADY63583.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3] Length = 261 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 169/245 (68%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV+ PL +A+ +Q++YLA+VLRM +G ILLFNG+DGEW +++S+ Sbjct: 17 MRANFRMQRLFVETPLVAGAAQEATTEQFNYLANVLRMTDGAEILLFNGRDGEWKARLSF 76 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q+R Q SD+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 77 PSRKKITLIPLEQTRPQPSASDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 136 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +N +++R I AAEQC IL+LP + P L+ +L+ W + +I++ DE +N L Sbjct: 137 KIHNTEKLRANAIEAAEQCGILSLPDVAEPVKLKDMLETWPRDRRIIYCDEGDAGQNPLP 196 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L +I +A+L+GPEGG+ EE+E L SL FVTP+ LGPRILR+DTAAVAA+A++QA Sbjct: 197 VLQSIKER-KIALLVGPEGGFSEEERELLRSLAFVTPIPLGPRILRADTAAVAALAVIQA 255 Query: 240 ICGDW 244 GDW Sbjct: 256 SIGDW 260 >gi|148253212|ref|YP_001237797.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. BTAi1] gi|146405385|gb|ABQ33891.1| hypothetical protein BBta_1682 [Bradyrhizobium sp. BTAi1] Length = 250 Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 105/236 (44%), Positives = 150/236 (63%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL + DQ +YL +VLR+ G +L+FNG+DGEW I + Sbjct: 10 RLYVDAPLQHGAHVELDRDQSNYLGNVLRLGAGGRVLVFNGRDGEWQGLIGGRKRPDSLT 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 +E+++R Q + +D+ Y+F+P+K RLDYM+QK+VEMG+ ++ PVITR+TQ + N +R+R Sbjct: 70 IEHRTRPQDRLADLAYVFAPLKHARLDYMVQKAVEMGVSSLAPVITRHTQVSRVNGERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I AAEQC IL+L + P +LE L + +VF DE + L+ L + Sbjct: 130 ANVIEAAEQCGILSLAEVREPVSLERFLAQRPPDRLLVFCDEAADVADPLQALRGGSDYA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +LIGPEGG+ SEE+E L P V ++LGPRILR+DTA VAA+AL+QA GDW Sbjct: 190 GIDLLIGPEGGFASEERELLLRQPLVLRVALGPRILRADTAGVAALALIQATLGDW 245 >gi|121602013|ref|YP_988622.1| hypothetical protein BARBAKC583_0300 [Bartonella bacilliformis KC583] gi|120614190|gb|ABM44791.1| conserved hypothetical protein TIGR00046 [Bartonella bacilliformis KC583] Length = 247 Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 118/245 (48%), Positives = 158/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + +RLF+ PL + + G Q YL HVLRM+EG ILLFNG DGEWL+++ Sbjct: 1 MRANYKFQRLFIQQPLVLNAEVIIEGSQASYLIHVLRMREGARILLFNGCDGEWLAELIT 60 Query: 61 VGKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K I ++ +Q R QT +SD+ Y F+PIK+ RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 IKKKIVVVRIIHQERVQTVRSDLVYCFAPIKSARLDYMVQKAVEMGVSVLQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+L P +LE LL +WD + F DE+ N L Sbjct: 121 TRINMARIEANIIEASEQCGILSLSECAPTVSLEALLTSWDEARPLFFCDESHEFHNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L +P V +LIGPEGG+ EE+ L PFV P+SLGPRILR+DTAAVAA+A++ Sbjct: 181 LLKKYRAMP-VGVLIGPEGGFSEEERILLKKYPFVVPISLGPRILRADTAAVAALAIINT 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TVGDW 244 >gi|319898419|ref|YP_004158512.1| hypothetical protein BARCL_0241 [Bartonella clarridgeiae 73] gi|319402383|emb|CBI75922.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 240 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/229 (48%), Positives = 144/229 (62%), Gaps = 2/229 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+++ LKRLFV L + + G Q YL HVLRMKEG ILLFNG+DGEWL+K+++ Sbjct: 1 MRVNYKLKRLFVRQLLALNKEIVIEGQQASYLMHVLRMKEGAKILLFNGQDGEWLAKLTF 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ Q R QTK SD+ Y F+P+K RLDYMIQK+VEMG + P+IT YTQ Sbjct: 61 IKKKFVVVRLINQERLQTKSSDLFYCFAPLKYMRLDYMIQKAVEMGASVLHPIITHYTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I AAEQC IL+LP P L+ L+NWD + F DE S N++ Sbjct: 121 TRINMARIEANIIEAAEQCGILSLPKCAPAVPLKTFLENWDETHALFFCDELSESYNTIP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P + +LIGPEGG+ EE+ L PFV +SLGPRILR+DT Sbjct: 181 LFKKHRTTP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADT 228 >gi|256111326|ref|ZP_05452352.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 3 str. Ether] gi|265992832|ref|ZP_06105389.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262763702|gb|EEZ09734.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 248 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 160/245 (65%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + + L WD + +++F DE S++ L Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCWEALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|239833512|ref|ZP_04681840.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239821575|gb|EEQ93144.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 248 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L +Q + + HYL HVLR+KEGD IL FNG+DGEW S++ Sbjct: 1 MRANYKMQRLYVENDLQSGSQIEVASQAAHYLTHVLRLKEGDEILAFNGRDGEWKSRLRP 60 Query: 61 VGKSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK F + Q+R Q SD+ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGKKRLFLEPFDQTRPQPPASDLIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR+R I AAEQC +L+LP + ++ WD ++F DE S++ L Sbjct: 121 PKLGTDRIRVNAIEAAEQCGVLSLPACRETIRFDRFIEQWDETRHLIFCDEGHESDDPLT 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A+ P A+LIGPEGG+ +E++TL LP+VT + LGPRILR+DTAAVAAMALVQ+ Sbjct: 181 ILQAMKPGP-AALLIGPEGGFSEDERQTLRRLPYVTAIPLGPRILRADTAAVAAMALVQS 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|306845979|ref|ZP_07478546.1| conserved hypothetical protein [Brucella sp. BO1] gi|306273614|gb|EFM55459.1| conserved hypothetical protein [Brucella sp. BO1] Length = 242 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELQAGVSFDAEAQAAHYLAHVLRMKEGDKVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ D Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|17988874|ref|NP_541507.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1 str. 16M] gi|256043637|ref|ZP_05446562.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1 str. Rev.1] gi|256262333|ref|ZP_05464865.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260564827|ref|ZP_05835312.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265990057|ref|ZP_06102614.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|17984700|gb|AAL53771.1| surface protein [Brucella melitensis bv. 1 str. 16M] gi|260152470|gb|EEW87563.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263000726|gb|EEZ13416.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092061|gb|EEZ16358.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] Length = 248 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|229007176|ref|NP_353680.3| hypothetical protein Atu0657 [Agrobacterium tumefaciens str. C58] Length = 245 Score = 214 bits (545), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 169/245 (68%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLF++ L +A+G+Q++YLA+VLRM +G ILLFNG+DGEW +K+S+ Sbjct: 1 MRANFRMQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSF 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q+R Q +++ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKKISLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +N +++R I AAEQC IL+LP + P L+ +L+ W + +I++ DE +N L Sbjct: 121 KIHNSEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A+ +A+L+GPEGG+ EE+ L SL FVTP+ LGPRILR+DTAAVAA+A++QA Sbjct: 181 ILQAVKER-KIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VIGDW 244 >gi|254699975|ref|ZP_05161803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 5 str. 513] gi|254710992|ref|ZP_05172803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis B2/94] gi|254712536|ref|ZP_05174347.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M644/93/1] gi|254715608|ref|ZP_05177419.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M13/05/1] gi|256029374|ref|ZP_05442988.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis M292/94/1] gi|256059062|ref|ZP_05449271.1| 16S ribosomal RNA methyltransferase RsmE [Brucella neotomae 5K33] gi|256157566|ref|ZP_05455484.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M490/95/1] gi|256253459|ref|ZP_05458995.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti B1/94] gi|260167538|ref|ZP_05754349.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. F5/99] Length = 248 Score = 214 bits (545), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|227820965|ref|YP_002824935.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium fredii NGR234] gi|227339964|gb|ACP24182.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 245 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 117/245 (47%), Positives = 165/245 (67%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV+ PL + +A+ DQ++YL +VLR EG +IL+FNG+DGEW +++S Sbjct: 1 MRANFRMQRLFVESPLHAGARHEATKDQFNYLINVLRFGEGSSILVFNGRDGEWRAELSL 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K + Q+R Q SD+ Y+F+P+KT RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKQLVLTAVEQTRPQPAPSDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+DR+R AAEQC +L +P + P LE LL NW +I+F DE S+N L Sbjct: 121 KLGNLDRLRANVTEAAEQCGVLGIPSVETPRKLEELLANWPRERRIIFCDEGNESQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L I+ +A+LIGPEGG+ E+ LHSL FVT + LGPRILR+DTAAVAA+AL+QA Sbjct: 181 ILGGISER-RLALLIGPEGGFSEAERVLLHSLDFVTAVPLGPRILRADTAAVAALALIQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TLGDW 244 >gi|229597125|ref|YP_001622546.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis ATCC 23445] Length = 248 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLELGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|326410911|gb|ADZ67975.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M28] gi|326554202|gb|ADZ88841.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M5-90] Length = 285 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 38 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 98 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 157 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 276 Query: 240 ICGDW 244 + GDW Sbjct: 277 VLGDW 281 >gi|240137404|ref|YP_002961875.1| hypothetical protein MexAM1_META1p0669 [Methylobacterium extorquens AM1] gi|240007372|gb|ACS38598.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 250 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW ++I G KS Sbjct: 10 RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSADL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR+ Sbjct: 70 RVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184 + I AAEQC IL++P I P L L + N +VF DE + + L Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVAALRGAADP 189 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A+ P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 190 ANPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|148558128|ref|YP_001257708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ovis ATCC 25840] gi|225629236|ref|ZP_03787269.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|148369413|gb|ABQ62285.1| conserved hypothetical protein TIGR00046 [Brucella ovis ATCC 25840] gi|225615732|gb|EEH12781.1| conserved hypothetical protein [Brucella ceti str. Cudo] Length = 285 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 38 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 98 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 158 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 276 Query: 240 ICGDW 244 + GDW Sbjct: 277 VLGDW 281 >gi|218528889|ref|YP_002419705.1| hypothetical protein Mchl_0859 [Methylobacterium chloromethanicum CM4] gi|218521192|gb|ACK81777.1| protein of unknown function DUF558 [Methylobacterium chloromethanicum CM4] Length = 250 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW ++I G KS Sbjct: 10 RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSADL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR+ Sbjct: 70 RVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184 + I AAEQC IL++P I P L L + N +VF DE + + L Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEEASVTDPVAALRGAADP 189 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 190 ASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|188580094|ref|YP_001923539.1| hypothetical protein Mpop_0826 [Methylobacterium populi BJ001] gi|179343592|gb|ACB79004.1| protein of unknown function DUF558 [Methylobacterium populi BJ001] Length = 250 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW S+I G KS Sbjct: 10 RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRSEIVPQGRKSADL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+R Q SD+ Y+F+P+KT RLDYM QK+VEMG G ++PV TR+TQ +DR+ Sbjct: 70 RVVAQTRPQPAPSDLHYLFAPLKTGRLDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184 + I AAEQC IL +P I P L L D +VF DE + + L Sbjct: 130 QANAIEAAEQCGILAVPEIGEPDRLPACLAALDPGRLLVFCDEDAPVTDPVAALRGAADP 189 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A P +A+L+GPEGG+H EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 190 ADPPPLAVLVGPEGGFHPEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|306841708|ref|ZP_07474395.1| conserved hypothetical protein [Brucella sp. BO2] gi|306288238|gb|EFM59622.1| conserved hypothetical protein [Brucella sp. BO2] Length = 242 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ D Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQVPRLGTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L LP + WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLALPDCREALRFDRFRDQWDTSRRLIFCDEGHESDDPLSILAGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|225686530|ref|YP_002734502.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis ATCC 23457] gi|225642635|gb|ACO02548.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] Length = 242 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQALRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|49475195|ref|YP_033236.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1] gi|49238000|emb|CAF27205.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1] Length = 247 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ PL I + K G Q Y+ HVLRM+EG ILLFNG+DGEWL+K+ Sbjct: 1 MRINYKLKRLFIRQPLVINEKIKIEGPQAFYIVHVLRMQEGAEILLFNGQDGEWLAKLIT 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ +Q R QT S++ Y F+P+KT RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 IKKKFVVVQLIHQERFQTALSNLIYCFAPLKTARLDYMVQKAVEMGVSVLQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ + + A+EQC IL+LP P +L LL WD + F DET S N L Sbjct: 121 TRINMARMESNVVEASEQCGILSLPECVPAVSLAELLARWDETQPLFFCDETHKSHNPL- 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + ILIGPEGG+ EE+ L PFV + LGPRILR+DTAAVAA+AL+ A Sbjct: 180 PLFKKREMLAPGILIGPEGGFSQEERSFLKKHPFVISIPLGPRILRADTAAVAALALLNA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TIGDW 244 >gi|294853463|ref|ZP_06794135.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL 07-0026] gi|294819118|gb|EFG36118.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL 07-0026] Length = 242 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAVHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|159139721|gb|AAK86465.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 239 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 166/239 (69%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RLF++ L +A+G+Q++YLA+VLRM +G ILLFNG+DGEW +K+S+ K I Sbjct: 1 MQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 Q+R Q +++ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q +N + Sbjct: 61 SLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNSE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 ++R I AAEQC IL+LP + P L+ +L+ W + +I++ DE +N L L A+ Sbjct: 121 KLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVK 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+L+GPEGG+ EE+ L SL FVTP+ LGPRILR+DTAAVAA+A++QA+ GDW Sbjct: 181 ER-KIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQAVIGDW 238 >gi|254705760|ref|ZP_05167588.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis M163/99/10] Length = 248 Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRXPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|256015526|ref|YP_003105535.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915] gi|261217356|ref|ZP_05931637.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261220586|ref|ZP_05934867.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261318573|ref|ZP_05957770.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261320229|ref|ZP_05959426.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261323007|ref|ZP_05962204.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261750457|ref|ZP_05994166.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261756957|ref|ZP_06000666.1| conserved hypothetical protein [Brucella sp. F5/99] gi|265986373|ref|ZP_06098930.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265996067|ref|ZP_06108624.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|255998186|gb|ACU49873.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915] gi|260919170|gb|EEX85823.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260922445|gb|EEX89013.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292919|gb|EEX96415.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261297796|gb|EEY01293.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261298987|gb|EEY02484.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261736941|gb|EEY24937.1| conserved hypothetical protein [Brucella sp. F5/99] gi|261740210|gb|EEY28136.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|262550364|gb|EEZ06525.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264658570|gb|EEZ28831.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 242 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|229220845|ref|YP_223253.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 1 str. 9-941] gi|229358031|ref|YP_418671.2| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis biovar Abortus 2308] gi|229597252|ref|YP_001932396.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus S19] gi|254690902|ref|ZP_05154156.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 6 str. 870] gi|254695788|ref|ZP_05157616.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 3 str. Tulya] gi|254698683|ref|ZP_05160511.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 2 str. 86/8/59] gi|254732130|ref|ZP_05190708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 4 str. 292] gi|256256087|ref|ZP_05461623.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 9 str. C68] gi|260544638|ref|ZP_05820459.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260097909|gb|EEW81783.1| conserved hypothetical protein [Brucella abortus NCTC 8038] Length = 248 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|254559584|ref|YP_003066679.1| hypothetical protein METDI1041 [Methylobacterium extorquens DM4] gi|254266862|emb|CAX22661.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 250 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW +++ G KS Sbjct: 10 RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAELVPQGRKSADL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR+ Sbjct: 70 RVVVQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184 + I AAEQC IL++P I P L L + N +VF DE + + L Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPGCLDALEANRLLVFCDEDASVTDPVAALRGAADP 189 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A+ P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 190 ANPPPLAVLVGPEGGFHAEERALIAARPNTVVLSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|163675614|gb|ABY39724.1| conserved hypothetical protein [Brucella suis ATCC 23445] Length = 242 Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 LGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|237816954|ref|ZP_04595946.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|297249441|ref|ZP_06933142.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus bv. 5 str. B3196] gi|237787767|gb|EEP61983.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|297173310|gb|EFH32674.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus bv. 5 str. B3196] Length = 285 Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 38 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 98 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMALVQA 276 Query: 240 ICGDW 244 + GDW Sbjct: 277 VLGDW 281 >gi|163850332|ref|YP_001638375.1| hypothetical protein Mext_0899 [Methylobacterium extorquens PA1] gi|163661937|gb|ABY29304.1| protein of unknown function DUF558 [Methylobacterium extorquens PA1] Length = 250 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW ++I G KS Sbjct: 10 RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSADL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR+ Sbjct: 70 RVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH- 186 + I AAEQC IL++P I P L L + N +VF DE + + L A+ Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVVALRGAANP 189 Query: 187 --IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ G+ Sbjct: 190 ASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGN 248 >gi|153010322|ref|YP_001371536.1| hypothetical protein Oant_2999 [Ochrobactrum anthropi ATCC 49188] gi|151562210|gb|ABS15707.1| protein of unknown function DUF558 [Ochrobactrum anthropi ATCC 49188] Length = 248 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L Q + + HYL HVLR+K+GD IL FNG+ GEW S++ Sbjct: 1 MRANYKMQRLYVENDLDDGDQIEVAPQAAHYLTHVLRLKDGDEILAFNGRHGEWKSRLKP 60 Query: 61 VGKSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK F + + Q+R Q SD+ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGKKRLFLMPFEQTRPQPLASDLVYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR++ I AAEQC +L++P + ++ WD + ++F DE S++ L Sbjct: 121 PRLGADRIKANAIEAAEQCGVLSIPECCEAIRFDRFIEQWDKSRHLIFCDEGYESDDPLT 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L +A P VA+LIGPEGG+ +E++TL +LPFVT + LGPRILR+DTAAVAAMALVQ+ Sbjct: 181 ILQKMAPGP-VALLIGPEGGFSEDERQTLRNLPFVTAIPLGPRILRADTAAVAAMALVQS 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|75676748|ref|YP_319169.1| hypothetical protein Nwi_2564 [Nitrobacter winogradskyi Nb-255] gi|74421618|gb|ABA05817.1| Conserved hypothetical protein 46 [Nitrobacter winogradskyi Nb-255] Length = 257 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 146/237 (61%), Gaps = 1/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL + + +Q +YL +VLR+ G N+L+FNG+DGEW + IS + + Sbjct: 12 RLYVDAPLAAGNRVPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAISGRKRPEHLE 71 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 + +R Q DV Y F+P+K RLDYM+QK+VEMG A++PV+TR+TQ N +R+R Sbjct: 72 IVAATRKQDHLRDVHYAFAPLKHARLDYMVQKAVEMGASALQPVLTRFTQVGRVNGERMR 131 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I AAEQC IL+L + P L+ L +VF DE + N + L + + Sbjct: 132 ANVIEAAEQCGILSLAAVEEPAQLDRWLGRRAGERLLVFCDEAASTANPVRALETVRSVA 191 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG+ E+E L + P + LSLGPRILR+DTAAVA +ALVQ + GDW Sbjct: 192 RGIDVLVGPEGGFADNERENLLNQPNILRLSLGPRILRADTAAVAVLALVQTVLGDW 248 >gi|254473523|ref|ZP_05086919.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062] gi|211957235|gb|EEA92439.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062] Length = 242 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 5/243 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RLFVD L +A Q +YL +VLRMKEG +L+FNGK GEW ++I G KS Sbjct: 1 MQRLFVDQELRAGLHLEADRAQANYLLNVLRMKEGGEVLVFNGKHGEWRAQILPTGRKSC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 V Q R QT D+ Y+F+P+K RLDYM+QK+VEMG G +RPVIT++TQN ++ Sbjct: 61 ELIVTEQLREQTPTPDLDYLFAPLKLARLDYMVQKAVEMGAGRLRPVITQFTQNPKIKLE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLH 182 R+ + + A EQC +L++P + P ++ LL W+ + QI+F DE G+ N LE L Sbjct: 121 RMESNALEACEQCGVLSVPSVLEPVQIKKLLSTWEQEEGDRQIIFCDEGHGTHNPLEALK 180 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + P +A+LIGPEGG+ EE+ LHS PFV + LGPRILR+DTAAVAA+A+VQA G Sbjct: 181 DVPKAP-LAVLIGPEGGFSEEERALLHSKPFVHAIPLGPRILRADTAAVAALAVVQAKLG 239 Query: 243 DWY 245 DW+ Sbjct: 240 DWF 242 >gi|319408122|emb|CBI81775.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 247 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+++ +RLF+ PL + + + G Q YL HVLRMKEG ILLFNG+DGEWL+KI+ Sbjct: 1 MRVNYKFQRLFIQQPLSLNREIEIEGAQVSYLVHVLRMKEGAQILLFNGQDGEWLAKITA 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ +Q+R QT SD+ Y F+P+K RLDYM+QK VEMG+ ++PVIT +TQ Sbjct: 61 IKKKFVVVQLIHQTRPQTTCSDLIYCFAPLKHARLDYMVQKVVEMGVSILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + NM R++ I AAEQC IL+LP P +L+ LL +WD + F DE+ +N L Sbjct: 121 SRINMARIKANIIEAAEQCGILSLPECLPAVSLKTLLAHWDKTHSLFFCDESHEIQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L +P + +LIGPEGG+ EE+ L FV +SLGPRILR+DTAAVAA+AL+ Sbjct: 181 LLKKHGTVP-LGVLIGPEGGFSEEEQVLLRKHSFVISISLGPRILRADTAAVAALALINT 239 Query: 240 ICGDW 244 W Sbjct: 240 TIEAW 244 >gi|241203235|ref|YP_002974331.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857125|gb|ACS54792.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 245 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 164/245 (66%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ DQ++YLA+VLRM++G ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLTRGAGVEANADQFNYLANVLRMEDGGEILLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q + D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R I AAEQC IL +P + P L LL W +I++ DE +N L Sbjct: 121 KVTNLDKLRANVIEAAEQCGILGIPDVAEPVRLLDLLDRWPSERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|209548049|ref|YP_002279966.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533805|gb|ACI53740.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/245 (45%), Positives = 164/245 (66%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ DQ++YLA+VLRM+EG +LLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSSGAALEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I+ ++R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRIQLTAIEETRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|144898953|emb|CAM75817.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 245 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 151/237 (63%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV L + DQ HYLA+V+R+K G+++ LFNG+DGEWL ++ V K S+ Sbjct: 3 RLFVANDLSADSLIGLDKDQSHYLANVMRVKAGEDVALFNGRDGEWLGRLDKVAKASVTL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V+ QSR QT + D+ + +PIK + +D + +K+ E+G+ A+ PV T T + N DR+ Sbjct: 63 QVQSQSRPQTPEPDLWLLAAPIKKDCIDLVAEKATELGISALWPVFTHRTVMSRVNTDRL 122 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + AAEQC+ L++P + PT L L WD +VF DE+ G + LH++ Sbjct: 123 AANMVEAAEQCERLSVPEMREPTDLAKALAGWDAARPLVFLDESGGGAPITQALHSLQPG 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P +A+L GPEGG+ E+ L LPF P+SLGPRILR++TAA+AA+++VQA+ GDW Sbjct: 183 P-LAVLTGPEGGFDDSERAMLARLPFAVPVSLGPRILRAETAAIAALSVVQALLGDW 238 >gi|240850045|ref|YP_002971438.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup] gi|240267168|gb|ACS50756.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup] Length = 247 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 155/245 (63%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ L + + K G Q YL HVLRMKEG ILLFNG+DGEWL+K+ Sbjct: 1 MRINYKLKRLFIRQTLALNEEIKIEGAQASYLVHVLRMKEGAEILLFNGQDGEWLAKLII 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 V K + ++ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP +L LL WD + F DE S N L Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLARWDETQPLFFCDEEHKSHNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + ILIGPEGG+ EE+ L PFV P+SLGPRILR+DTAAVAA+AL+ A Sbjct: 181 SFKK-RDVTTPGILIGPEGGFSEEERSFLKKHPFVVPISLGPRILRADTAAVAALALLNA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TVGDW 244 >gi|260756485|ref|ZP_05868833.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260759917|ref|ZP_05872265.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260763155|ref|ZP_05875487.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882306|ref|ZP_05893920.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261216206|ref|ZP_05930487.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|62197593|gb|AAX75892.1| conserved hypothetical protein TIGR00046 [Brucella abortus bv. 1 str. 9-941] gi|82939654|emb|CAJ12643.1| Conserved hypothetical protein 46:Protein of unknown function DUF558 [Brucella melitensis biovar Abortus 2308] gi|189021229|gb|ACD73950.1| Conserved hypothetical protein 46 [Brucella abortus S19] gi|260670235|gb|EEX57175.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673576|gb|EEX60397.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676593|gb|EEX63414.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260871834|gb|EEX78903.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260917813|gb|EEX84674.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] Length = 242 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVLRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|229107039|ref|NP_699939.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis 1330] Length = 248 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++R +V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K +LDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|229597123|ref|YP_001609040.2| 16S ribosomal RNA methyltransferase RsmE [Bartonella tribocorum CIP 105476] Length = 247 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ L + + K G Q YL HVLRMKEG IL+FNG+DGEWL+K+ Sbjct: 1 MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 V K + ++ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG ++PVIT +TQ Sbjct: 61 VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP +L LL+ WD + F DE S N L Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ +LIGPEGG+ EE+ L PFV P+SLGPRILR+DTAAVAA+AL+ A Sbjct: 181 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILRADTAAVAALALLNA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TVGDW 244 >gi|300024089|ref|YP_003756700.1| hypothetical protein Hden_2583 [Hyphomicrobium denitrificans ATCC 51888] gi|299525910|gb|ADJ24379.1| protein of unknown function DUF558 [Hyphomicrobium denitrificans ATCC 51888] Length = 248 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 2/238 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66 +RLF+ L + + Q HYL +VLR++ G +L+FNG+DGEW S I ++ Sbjct: 9 ERLFIADDLAAGVSVELAQQQAHYLTNVLRLRPGAKLLVFNGRDGEWQASLIESRKRTTV 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +E Q+R Q + D+ Y+F+P+K +RLDYM+QK+ EMG+ +RPVIT T N +R Sbjct: 69 LGIEEQTRPQEQGPDIDYLFAPLKRSRLDYMVQKATEMGVRRLRPVITERTIAERVNSER 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I AAEQC IL +P + PP +LE L WD +++ DE + + + L + Sbjct: 129 MLANAIEAAEQCGILRVPEVEPPVSLETALAAWDPARALIYCDEHETAADPIATLRKVPA 188 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P VA+LIGPEGG+ + E+ L + +V PL LGPRI+R+DTAAVAA+ LV A+ GDW Sbjct: 189 GP-VAVLIGPEGGFSNGERSRLLANSYVVPLPLGPRIMRADTAAVAALTLVNAVLGDW 245 >gi|116250629|ref|YP_766467.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum bv. viciae 3841] gi|115255277|emb|CAK06352.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 112/245 (45%), Positives = 164/245 (66%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ DQ++YL +VLRM+EG ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSSGAVVEANADQFNYLGNVLRMEEGAEILLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q + D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC IL +P + P L LL +W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGILGIPDVAEPVRLLDLLDHWPSERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|114705941|ref|ZP_01438844.1| surface protein [Fulvimarina pelagi HTCC2506] gi|114538787|gb|EAU41908.1| surface protein [Fulvimarina pelagi HTCC2506] Length = 295 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 103/237 (43%), Positives = 146/237 (61%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RLFV+ + T A+ Q +YL +VLR EGD++LLFNG+DGEW +++ K + Sbjct: 56 RLFVEERITADTPIAATSPQANYLLNVLRKDEGDSVLLFNGQDGEWRAELRKASKKKLDL 115 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + R Q D+ Y F+P+K RLDYM+QK+VEMG G ++PV+T TQN D++ Sbjct: 116 FPVAKVRVQQPPYDLIYCFAPLKVGRLDYMVQKAVEMGAGILQPVLTHRTQNHRVRTDKI 175 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC IL +P P + LL NW + +VF DE + + ++ L + Sbjct: 176 RANAIEAAEQCGILAIPECREPVKFDDLLSNWSSSIPLVFCDEKMDAASPIDALRELGD- 234 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++IGPEGG+ +E+ +L F T +SLGPRILR+DTAAVAA+ +VQA+CGDW Sbjct: 235 GRKGLIIGPEGGFSQDERVSLLGAEFTTAISLGPRILRADTAAVAALTMVQAVCGDW 291 >gi|110632733|ref|YP_672941.1| hypothetical protein Meso_0372 [Mesorhizobium sp. BNC1] gi|110283717|gb|ABG61776.1| protein of unknown function DUF558 [Chelativorans sp. BNC1] Length = 248 Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 109/245 (44%), Positives = 160/245 (65%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL++ L + + + +Q HYL +VLRM+ G +L+FNG+ GEWL+++ Sbjct: 1 MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKE 60 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K S V +R QT Q D+ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 ISKKSALLAVRELTREQTPQPDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQI 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR++ I AAEQC IL++P + P L+ LL W+ ++VF DE +N Sbjct: 121 PKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRWEEGRRLVFCDEDAPGQNPFP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +L A+A + +L+GPEGG+ E+ TL SL FV P+ LGPRILR+DTAAVAA+A++QA Sbjct: 181 RLSALAG-ERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AAGDW 244 >gi|161017487|emb|CAK01045.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 277 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ L + + K G Q YL HVLRMKEG IL+FNG+DGEWL+K+ Sbjct: 31 MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 90 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 V K + ++ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG ++PVIT +TQ Sbjct: 91 VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 150 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP +L LL+ WD + F DE S N L Sbjct: 151 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 210 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ +LIGPEGG+ EE+ L PFV P+SLGPRILR+DTAAVAA+AL+ A Sbjct: 211 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILRADTAAVAALALLNA 269 Query: 240 ICGDW 244 GDW Sbjct: 270 TVGDW 274 >gi|86356450|ref|YP_468342.1| hypothetical protein RHE_CH00804 [Rhizobium etli CFN 42] gi|86280552|gb|ABC89615.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 245 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 112/245 (45%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV PL +A+ DQ++YLA+VLRM++G ILLFNG+DGEW + +S+ Sbjct: 1 MRANFRMQRLFVYAPLSAGAAVEANADQFNYLANVLRMEDGAEILLFNGRDGEWKATLSF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I +R Q D+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEATRPQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGRLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLAIPEVAEPVKLSDLLDRWPSERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 VLAAIQER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|328545108|ref|YP_004305217.1| hypothetical protein SL003B_3491 [polymorphum gilvum SL003B-26A1] gi|326414850|gb|ADZ71913.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1] Length = 252 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/243 (45%), Positives = 164/243 (67%), Gaps = 6/243 (2%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 +RLF+ L Q +A Q +YL +VLR+ + D +L+FNG+DGEWL++I+ G K+ Sbjct: 9 QRLFLRHGLADGGQVEADRAQANYLLNVLRLADDDRVLVFNGRDGEWLAEIAAAGRKACT 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ ++R QT Q D+ Y+F+P+K RLDYM+QK+VEMG GA+RPV+TR+T + N++R Sbjct: 69 LRLVERTRPQTPQPDLHYLFAPLKHARLDYMVQKAVEMGAGALRPVMTRHTHASRINLER 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSENSLEKLHA 183 + + AAEQC +++LP + P L+ +L W D +++F DE S + L L Sbjct: 129 MEANVVEAAEQCGVISLPDVRAPAALDAVLAAWPQADAGRRLLFCDEGEESHSPLPVLAR 188 Query: 184 IA-HIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +A P+ +A+L+GPEGG+ EE+ L LPFV P+ LGPRILR+DTAAVAA+A+VQA Sbjct: 189 LAGEGPSPLALLVGPEGGFSKEERALLRGLPFVVPIPLGPRILRADTAAVAALAVVQAAL 248 Query: 242 GDW 244 GDW Sbjct: 249 GDW 251 >gi|319782233|ref|YP_004141709.1| hypothetical protein Mesci_2516 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168121|gb|ADV11659.1| protein of unknown function DUF558 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 244 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/245 (45%), Positives = 157/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV L + +A Q HYL HVLR+ EG IL+FNG+DGEW + IS Sbjct: 1 MRANYKMQRLFVTDDLAPDIEFEAGQQQSHYLLHVLRLGEGAEILVFNGRDGEWSAAISA 60 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K ++R KV R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ Sbjct: 61 KTKRAVRLKVSALQRPQPPLPDLVYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++DR+R + AAEQC IL +P + + LL WD +++F DE + N L Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPQVREAEKFDRLLTGWDTERRLIFCDEDASTNNPLA 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A+ + +L+GPEGG+ +E++ L +LPFVT + LGPRILR+DTAAVAA A++QA Sbjct: 181 ALQAVKE-KKLGLLVGPEGGFSDDERKMLRALPFVTAIPLGPRILRADTAAVAAFAVMQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TVGDW 244 >gi|23464129|gb|AAN33944.1| conserved hypothetical protein TIGR00046 [Brucella suis 1330] Length = 242 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R +V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K +LDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238 >gi|150395613|ref|YP_001326080.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium medicae WSM419] gi|150027128|gb|ABR59245.1| protein of unknown function DUF558 [Sinorhizobium medicae WSM419] Length = 245 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/246 (46%), Positives = 169/246 (68%), Gaps = 4/246 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV+ PL +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++IS Sbjct: 1 MRANFRMQRLFVESPLHNGASHQATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEISM 60 Query: 61 VGK--SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 + ++ VE Q+R Q D+ Y+F+P+KT RLDY++QK+VEMG G ++PVIT++ Q Sbjct: 61 PSRKQAVLVAVE-QTRPQPAPCDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVITQHVQ 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +++R+R I AAEQC +L +P + P LE LL W + +IVF DE S+N L Sbjct: 120 GKIGSLERIRANAIEAAEQCGVLGIPAVEEPRRLEDLLAAWPRDRRIVFCDEGNESQNPL 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L+ +A +A+LIGPEGG+ E++ L SL FVT + LGPRILR+DTAAVAAMA++Q Sbjct: 180 PILNELAE-HRLALLIGPEGGFSETERDLLRSLDFVTAIPLGPRILRADTAAVAAMAVIQ 238 Query: 239 AICGDW 244 A GDW Sbjct: 239 ATLGDW 244 >gi|260567973|ref|ZP_05838442.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261753715|ref|ZP_05997424.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|260154638|gb|EEW89719.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261743468|gb|EEY31394.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 235 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 148/222 (66%), Gaps = 2/222 (0%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDV 82 A HYL HVLRMKEGD +L+FNG+DGEW + + G K + + Q+R Q K S++ Sbjct: 11 AGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQPKPSEL 70 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 Y F+P+K +LDYM+QK+VEMG G ++PVIT++TQ +R+R I AAEQC +L+ Sbjct: 71 IYCFAPLKQGQLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAEQCGVLS 130 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP + L WD + +++F DE S++ L L + P+ +LIGPEGG+ Sbjct: 131 LPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGPEGGFSE 189 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 190 EERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 231 >gi|190890510|ref|YP_001977052.1| hypothetical protein RHECIAT_CH0000889 [Rhizobium etli CIAT 652] gi|190695789|gb|ACE89874.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 245 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 111/245 (45%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +AS +Q++YLA+VLRM+ ILLFNG+DGEW + +S+ Sbjct: 1 MRANFRMQRLFVDAPLSAGAVVEASAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEETRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|158330817|dbj|BAF88302.1| protein of unknown function [Azorhizobium caulinodans ORS 571] Length = 283 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 2/238 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66 +RLFV L T +Q HY+A+V+R+ +L+FNG+DGEW ++I K +R Sbjct: 42 QRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKKEVR 101 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + Q+R Q + + Y F+P+K RLDYM+QK+VEMG G + PV+T++TQ N +R Sbjct: 102 LSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVNGER 161 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I AAEQC ILT+P + P L L + +VF DE + L L A Sbjct: 162 MEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRPAAG 221 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P + +LIGPEGG+ ++E+ LH V ++LGPRILR+DTA VAA+ALVQA+CGDW Sbjct: 222 GP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGDW 278 >gi|229595716|ref|YP_001525220.2| 16S ribosomal RNA methyltransferase RsmE [Azorhizobium caulinodans ORS 571] Length = 250 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 2/238 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66 +RLFV L T +Q HY+A+V+R+ +L+FNG+DGEW ++I K +R Sbjct: 9 QRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKKEVR 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + Q+R Q + + Y F+P+K RLDYM+QK+VEMG G + PV+T++TQ N +R Sbjct: 69 LSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVNGER 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I AAEQC ILT+P + P L L + +VF DE + L L A Sbjct: 129 MEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRPAAG 188 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P + +LIGPEGG+ ++E+ LH V ++LGPRILR+DTA VAA+ALVQA+CGDW Sbjct: 189 GP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGDW 245 >gi|85714212|ref|ZP_01045200.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A] gi|85698659|gb|EAQ36528.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A] Length = 256 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 1/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL + + +Q +YL +VLR+ G N+L+FNG+DGEW + I + + Sbjct: 17 RLYVDAPLAAGCRIPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAIFGRKRLENLE 76 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 + +R Q + DV+Y F+P+K RLDYM+QK+VEMG+ A++P++TR+TQ N +R+R Sbjct: 77 IVAATRKQDQLPDVRYAFAPLKHARLDYMVQKAVEMGVCALQPLLTRFTQVGRVNGERMR 136 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I AAEQC IL+L + P +L+ L +VF DE + N L L + Sbjct: 137 ANVIEAAEQCGILSLAAVEEPASLDQWLGRRGPERLLVFCDEAASTANPLRTLEPARRVA 196 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG+ +E+ L P V LSLGPRILR+DTAAVA +ALVQ + GDW Sbjct: 197 QGIDVLVGPEGGFAEDERVNLLKQPNVLRLSLGPRILRADTAAVAVLALVQTVLGDW 253 >gi|260462657|ref|ZP_05810863.1| protein of unknown function DUF558 [Mesorhizobium opportunistum WSM2075] gi|259031563|gb|EEW32833.1| protein of unknown function DUF558 [Mesorhizobium opportunistum WSM2075] Length = 273 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 157/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV L + A Q HYL HVLR+ EG IL+FNG+DGEW + I+ Sbjct: 30 MRANYKMQRLFVPDDLAGDAEFDAGQQQSHYLMHVLRLGEGAEILVFNGRDGEWSAAIAA 89 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +++R KV R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ Sbjct: 90 KTKRAVRLKVLALQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 149 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++DR+R + AAEQC IL +P + E +L WD +++F DE + N L Sbjct: 150 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERVLTGWDKGRRLIFCDEDASTNNPLP 209 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI + +L+GPEGG+ EE++ L +LPFV+ + LGPRILR+DTAAVAA+A++QA Sbjct: 210 ALQAIRE-KKLGLLVGPEGGFSDEERKMLRALPFVSAIPLGPRILRADTAAVAALAVIQA 268 Query: 240 ICGDW 244 GDW Sbjct: 269 SVGDW 273 >gi|327191156|gb|EGE58200.1| hypothetical protein RHECNPAF_3350022 [Rhizobium etli CNPAF512] Length = 245 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ +Q++YLA+VLRM+ ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSSGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q+R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEQTRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 VLSAIRE-KHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|307308472|ref|ZP_07588176.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C] gi|307319035|ref|ZP_07598466.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83] gi|306895449|gb|EFN26204.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83] gi|306901075|gb|EFN31683.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C] Length = 245 Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 168/246 (68%), Gaps = 4/246 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLF++ PL + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ Sbjct: 1 MRANFRMQRLFIENPLHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60 Query: 61 VGK--SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 + ++ VE Q+R Q D+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKQAVLVAVE-QTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQ 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +++RVR I AAEQC +L +P + P LE LL +W + +IVF DE S+N L Sbjct: 120 GKIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPL 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L IA +A+LIGPEGG+ E++ L S FVT + LGPRILR+DTAAVAAMA++Q Sbjct: 180 PILEGIAER-RLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238 Query: 239 AICGDW 244 A GDW Sbjct: 239 ATLGDW 244 >gi|90426187|ref|YP_534557.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris BisB18] gi|90108201|gb|ABD90238.1| protein of unknown function DUF558 [Rhodopseudomonas palustris BisB18] Length = 251 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 102/245 (41%), Positives = 146/245 (59%), Gaps = 2/245 (0%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 +I RL+VD L Q + +Q +YL +VLR+ G +L+FNG+DGEW + I Sbjct: 3 QIEFRSPRLYVDADLSAGLQVPLTREQGNYLGNVLRLSAGAAVLVFNGRDGEWQAMIGAG 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + R + ++R+Q DV Y+F+P+K RLDYM+QK++EMG A++PV+TR+TQ T Sbjct: 63 KRVDRLDILSRARAQDGLPDVTYVFAPLKHARLDYMVQKAIEMGACALQPVLTRFTQVTR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 N +R+R I AAEQC IL++ + P LE L D +VF DE + + L Sbjct: 123 VNTERMRANVIEAAEQCGILSIAAVEEPLKLERYLSTRDTGRLLVFCDEAAEVADPVAAL 182 Query: 182 HAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + I +IGPEGG+ EE+ L P + L+LGPRI+R+DTAAVAA+ LVQ Sbjct: 183 GGARERASAGIDVVIGPEGGFAEEERALLLRQPNILRLALGPRIMRADTAAVAALTLVQT 242 Query: 240 ICGDW 244 + GDW Sbjct: 243 VLGDW 247 >gi|222106772|ref|YP_002547563.1| hypothetical protein Avi_5780 [Agrobacterium vitis S4] gi|221737951|gb|ACM38847.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 245 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 108/245 (44%), Positives = 166/245 (67%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+VD L + +QY+YLA+VLR+ EG +L+FNG+DGEW + +++ Sbjct: 1 MRANYKMQRLYVDAGLEAANPVATTPEQYNYLANVLRLTEGAEVLVFNGRDGEWKASLAF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I + Q+R Q + SD+ ++F+P+K R+DY++QK+VEMG GA++PV+T++ Q Sbjct: 61 PTRKRIALIPQSQTRPQPRPSDLTFLFAPLKVGRMDYLVQKAVEMGAGALQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++R++ I AAEQC IL++P + P L+ LL+ W +I+F DE ++N + Sbjct: 121 RIGSIERLQANVIEAAEQCGILSVPKVAPLVKLKDLLETWPATHRIIFCDEDSATDNPMP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI +A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA Sbjct: 181 ALAAIEER-QLALLVGPEGGFSDEERSLLRSLGFVTAIPLGPRILRADTAAVAALAVVQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 SIGDW 244 >gi|229259630|ref|NP_107316.2| 16S ribosomal RNA methyltransferase RsmE [Mesorhizobium loti MAFF303099] Length = 244 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV L + A Q HYL HVLR+ EG ILLFNG+DGEW + I+ Sbjct: 1 MRANYKMQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAA 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K +R +V+ R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ Sbjct: 61 KSKKAVRLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++DR+R + AAEQC IL +P + E LL WD ++VF DE + N L Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A+ +A+L+GPEGG+ +E++ L +LPFVT + LGPRILR+DTAAVAA+A++QA Sbjct: 181 ALRAVKE-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILRADTAAVAALAVMQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TVGDW 244 >gi|118590628|ref|ZP_01548029.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614] gi|118436604|gb|EAV43244.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614] Length = 252 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/250 (44%), Positives = 165/250 (66%), Gaps = 8/250 (3%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 K +++RLF+ L + +A Q +YL +VLR+K+GD +L+FNG DGEWL+KI Sbjct: 3 KYEFNMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDYVLVFNGTDGEWLAKIVSN 62 Query: 62 GK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G+ ++ ++R QT +D+ Y+F+P+K RLDYM+QK+VEMG G+++PV+T++TQ + Sbjct: 63 GRRDCTLQLMERTREQTSANDLMYMFAPLKHARLDYMVQKAVEMGAGSLKPVLTQHTQAS 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSEN- 176 N++R+ I AAEQC +L +P + P L +L W +++F DE G+ N Sbjct: 123 RINLERMEANVIEAAEQCGVLAVPEVLAPQPLADVLSVWAEAQPGRRLLFCDEAEGTNNP 182 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 SL ++ P +AILIGPEGG+ EE+ L SL FVTP+ LGPRILR+DTAAVAA+ Sbjct: 183 LLSLAQMKENGPQP-LAILIGPEGGFSEEERSLLRSLDFVTPIPLGPRILRADTAAVAAL 241 Query: 235 ALVQAICGDW 244 A++QA GDW Sbjct: 242 AVLQATVGDW 251 >gi|222084972|ref|YP_002543501.1| hypothetical protein Arad_1026 [Agrobacterium radiobacter K84] gi|221722420|gb|ACM25576.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 245 Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 111/245 (45%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV + +A +Q++YLA+VLRM++G +L+FNG+DGEW ++IS+ Sbjct: 1 MRANFRMQRLFVVSDIKANAGIEADQEQFNYLANVLRMEDGAELLIFNGRDGEWKARISF 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q SD+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKRILMTPIEETRPQPAPSDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D+VR I AAEQC IL +P + P L LL+ W +I++ DE +N L Sbjct: 121 KITNLDKVRANVIEAAEQCGILGIPDVAEPVKLADLLERWPRERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L I ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR+DTAAVAAMA++QA Sbjct: 181 LLAKITE-KHLALLVGPEGGFSEEERALLRSLDFVTAIPLGPRILRADTAAVAAMAVIQA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 AIGDW 244 >gi|14026505|dbj|BAB53102.1| mll6903 [Mesorhizobium loti MAFF303099] Length = 238 Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 112/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++RLFV L + A Q HYL HVLR+ EG ILLFNG+DGEW + I+ K + Sbjct: 1 MQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAAKSKKAV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 R +V+ R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ ++D Sbjct: 61 RLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQVAKPSID 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R + AAEQC IL +P + E LL WD ++VF DE + N L L A+ Sbjct: 121 RLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLPALRAVK 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+L+GPEGG+ +E++ L +LPFVT + LGPRILR+DTAAVAA+A++QA GDW Sbjct: 181 E-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILRADTAAVAALAVMQATVGDW 238 >gi|15964524|ref|NP_384877.1| hypothetical protein SMc00826 [Sinorhizobium meliloti 1021] gi|15073701|emb|CAC45343.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 245 Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 167/246 (67%), Gaps = 4/246 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLF++ L + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ Sbjct: 1 MRANFRMQRLFIENALHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60 Query: 61 VGK--SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 + ++ VE Q+R Q D+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKQAVLVAVE-QTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQ 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +++RVR I AAEQC +L +P + P LE LL +W + +IVF DE S+N L Sbjct: 120 GKIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPL 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L IA +A+LIGPEGG+ E++ L S FVT + LGPRILR+DTAAVAAMA++Q Sbjct: 180 PILEGIAE-RRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238 Query: 239 AICGDW 244 A GDW Sbjct: 239 ATLGDW 244 >gi|192289752|ref|YP_001990357.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris TIE-1] gi|192283501|gb|ACE99881.1| protein of unknown function DUF558 [Rhodopseudomonas palustris TIE-1] Length = 251 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 3/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD L Q DQ +YL +VLR+ G +L FNG+DGEW + I+ + + Sbjct: 10 RLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALE 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V Q+R Q + DV Y+F+P+K RLDYM QK+VEMG G ++PV+T++TQ N DR+R Sbjct: 70 VAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQC IL+L + P L+ FL + +VF DE + + L A Sbjct: 130 ANVIEAAEQCGILSLAEVGEPIGLDRFLASRANGERLLVFCDEDAEIADPVAALQAARDA 189 Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +L+GPEGG+ +EE+ L P + L+LGPRI+R+DTAAVAA+ LVQA+ GDW Sbjct: 190 AARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTLVQAVLGDW 248 >gi|39934226|ref|NP_946502.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris CGA009] gi|39648074|emb|CAE26594.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 251 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 3/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD L Q DQ +YL +VLR+ G +L FNG+DGEW + I+ + + Sbjct: 10 RLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALE 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V Q+R Q + DV Y+F+P+K RLDYM QK+VEMG G ++PV+T++TQ N DR+R Sbjct: 70 VAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQC IL+L + P L+ FL + +VF DE + + L A Sbjct: 130 ANVIEAAEQCGILSLAEVGEPIGLDRFLAGRANGERLLVFCDEDAEIADPVAALQAARDA 189 Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +L+GPEGG+ +EE+ L P + L+LGPRI+R+DTAAVAA+ LVQA+ GDW Sbjct: 190 AARGVDLLVGPEGGFSTEERALLLKQPAILRLALGPRIMRADTAAVAALTLVQAVLGDW 248 >gi|170751754|ref|YP_001758014.1| hypothetical protein Mrad2831_5384 [Methylobacterium radiotolerans JCM 2831] gi|170658276|gb|ACB27331.1| protein of unknown function DUF558 [Methylobacterium radiotolerans JCM 2831] Length = 250 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIF 86 Q +YL +VLR D +L+FNG+ GEW + + G K V Q+R QT+++D+ Y+F Sbjct: 29 QANYLLNVLRRGPDDPVLVFNGRHGEWRAHLVQTGRKGADLHVAAQTRPQTERADLHYLF 88 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +P+K+ RLDY+ QK+VEMG G IRPVITR+TQ N+DR+R + AAEQC IL +P Sbjct: 89 APLKSARLDYLAQKAVEMGAGTIRPVITRFTQGDRVNIDRLRANAVEAAEQCGILAIPEC 148 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH---IPNVAILIGPEGGYHSE 203 P L L +VF DE + + L A P +A+L+GPEGG+ E Sbjct: 149 PEPERLPAALAGLAPGRLLVFCDEDAPVRDPVAALRAAGDPLAPPPLAVLVGPEGGFSEE 208 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E+ + + P LSLGPRILR+DTAAVA + LVQA+ GD Sbjct: 209 ERALILARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248 >gi|217979033|ref|YP_002363180.1| protein of unknown function DUF558 [Methylocella silvestris BL2] gi|217504409|gb|ACK51818.1| protein of unknown function DUF558 [Methylocella silvestris BL2] Length = 253 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 6/241 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD PL + + Q +YL + LR+K+G IL FNG+DGEW ++I G+ S Sbjct: 10 RLYVDAPLAPQARVSLEAPQVNYLRNALRLKDGAEILAFNGRDGEWRARIETEGRRSTVL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R Q D+ Y+F+P+K RLDYM+QK+VEMG G +RPV+TR TQ N+DR+ Sbjct: 70 AADQQLRPQPPPFDLHYLFAPLKHARLDYMVQKAVEMGAGQLRPVLTRRTQAERINLDRM 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC +L++ I P L+ L W + +VF DE ++ + L A A Sbjct: 130 RANAIEAAEQCGVLSVAEIIAPIRLDAALAQWSPDRLLVFCDEDAPEQDPVAALRA-ARE 188 Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 N +A+LIGPEGG+ +E++ L + P LSLGPR+LR+DTAAVAA+ALVQA GD Sbjct: 189 SNPGGGLAVLIGPEGGFDEDERKALLAAPRTVRLSLGPRVLRADTAAVAALALVQASIGD 248 Query: 244 W 244 W Sbjct: 249 W 249 >gi|170740484|ref|YP_001769139.1| hypothetical protein M446_2244 [Methylobacterium sp. 4-46] gi|168194758|gb|ACA16705.1| protein of unknown function DUF558 [Methylobacterium sp. 4-46] Length = 265 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 143/248 (57%), Gaps = 13/248 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLF+D P+ Q +YL VLR EGD +L+FNG+DGEW ++I G K+ Sbjct: 10 RLFLDVPMAEGVVHGLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWWAEIRPTGRKAGDL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + ++R QT+ D+ Y+F+P+K RLDY+ QK+VEMG IRPVITR TQ +DR+ Sbjct: 70 VLRRRTRPQTEPGDLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186 R + AAEQC IL +P I L L + + +VF DE + + L +A Sbjct: 130 RANAVEAAEQCGILAIPEIAEAAPLTEALAALEADRLLVFCDEDAPVRDPVAALRQGVAR 189 Query: 187 IPN-----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 P +A++IGPEGG+ EE+ + P LSLGPRILR+DTAAVA +A Sbjct: 190 PPAGAGRGGNVPLPLAVVIGPEGGFTPEERALILERPTTIRLSLGPRILRADTAAVAVLA 249 Query: 236 LVQAICGD 243 LVQA+ GD Sbjct: 250 LVQAVLGD 257 >gi|182679209|ref|YP_001833355.1| hypothetical protein Bind_2249 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635092|gb|ACB95866.1| protein of unknown function DUF558 [Beijerinckia indica subsp. indica ATCC 9039] Length = 250 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 143/238 (60%), Gaps = 6/238 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RL++D PL Q HYL VLR+ GD+IL+FNG++GEW + + G K+++ Sbjct: 10 RLYLDQPLRAGGTVALDKSQAHYLCTVLRLVAGDHILVFNGREGEWRAALKESGRKTVQI 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R+Q +D+ Y+F+P+K RLDYM QK+VEMG ++P+ TR TQN N++R+ Sbjct: 70 EPIEQVRTQEPDNDLHYLFAPLKHARLDYMAQKAVEMGASLLQPLFTRRTQNERINLERL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC ILTLP I L+ L D N +VF DE L L Sbjct: 130 RANAIEAAEQCGILTLPEIAEAVKLDAYLARRDQNRVLVFCDEDAPPIGPLAALREALRP 189 Query: 188 PNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 VA +LIGPEGG+ + E++ L S P +SLGPRILR+DTAAVA +ALVQAI Sbjct: 190 GGVACRGADVLIGPEGGFDATERDLLVSQPNHIRISLGPRILRADTAAVAVLALVQAI 247 >gi|312114482|ref|YP_004012078.1| hypothetical protein Rvan_1732 [Rhodomicrobium vannielii ATCC 17100] gi|311219611|gb|ADP70979.1| protein of unknown function DUF558 [Rhodomicrobium vannielii ATCC 17100] Length = 242 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 ++R+FV L + Q HYL +VLR+ EG +L F+G GEW +KI KS Sbjct: 3 MQRIFVANKLDPDGEIALDTAQAHYLLNVLRLSEGAEVLTFDGTSGEWRAKIVKARKSAC 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 ++ + R QT + + Y F+P+K RLDYM+QK+VEMG ++PVIT++T D Sbjct: 63 TIRLMEKVREQTAPTGIHYAFAPLKQARLDYMVQKAVEMGASLLQPVITQHTAVPRLGAD 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ I AAEQC +LTLP I P L+ +D + +VF DE + L+ L A++ Sbjct: 123 RMKANAIEAAEQCGVLTLPEIKAPVKFAAFLQAFDKDRALVFCDERAEVASPLDALSALS 182 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V LIGPEGG+ E+ L S FV P+SLGPRI+R+DTAAVA +AL+ GDW Sbjct: 183 G-RKVTALIGPEGGFSENERADLLSRSFVCPISLGPRIMRADTAAVAVLALLNVTVGDW 240 >gi|23010926|ref|ZP_00051451.1| COG1385: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 250 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 142/239 (59%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLFV+ L Q +YL VLR E D +LLFNG+DGEW ++I G KS Sbjct: 10 RLFVESDLAEGLILPLERAQANYLLTVLRRSETDPVLLFNGRDGEWRAEIVPQGRKSADL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V ++R Q D+ Y+F+P+KT RLDYM QK+VEMG G IRPV TR+TQ ++R+ Sbjct: 70 RVVTRTRPQPAPPDLHYLFAPLKTGRLDYMAQKAVEMGAGLIRPVFTRFTQGERIKLERL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL---EKLHAI 184 R + AAEQC IL++P I P L L +VF DE + + Sbjct: 130 RANAVEAAEQCGILSIPEIAEPARLPACLDALAPERLLVFCDEDAPVSDPVAALRAAADP 189 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 AH P +A+L+GPEGG+H EE+ + + P LSLGPRILR+DTAAVA + LVQA+ GD Sbjct: 190 AHPPPLAVLVGPEGGFHEEERALIAARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248 >gi|307941761|ref|ZP_07657116.1| surface protein [Roseibium sp. TrichSKD4] gi|307775369|gb|EFO34575.1| surface protein [Roseibium sp. TrichSKD4] Length = 252 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 107/244 (43%), Positives = 166/244 (68%), Gaps = 6/244 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RLF+ L + +A Q +YL +VLR+K+GD +L F+G++GEWL++I G K+ Sbjct: 8 MQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDKVLAFDGQNGEWLTEIKVTGRKAC 67 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 ++ Q+R Q K +D+ Y+F+P+K RLDYM+QK+VEMG+G+++PV+T++TQ + N++ Sbjct: 68 VLELVEQTRPQEKSADLLYLFAPLKHARLDYMVQKAVEMGVGSLQPVMTQHTQTSRVNLE 127 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQI-VFADETCGSENSLEKLH 182 R+ I AAEQC +L++P + P L+ LL NW H ++ +F DE + N L L Sbjct: 128 RMEANVIEAAEQCGVLSVPGVVEPEPLKALLANWPEKHPGRVLLFCDEGSETTNPLGDLA 187 Query: 183 AI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + A ++A+L+GPEGG+ +EE+ LH FV + LGPRILR+DTAAVAA+A++QA Sbjct: 188 KLVEAKPESIALLVGPEGGFSTEERSILHQSDFVVSIPLGPRILRADTAAVAALAVIQAT 247 Query: 241 CGDW 244 GDW Sbjct: 248 LGDW 251 >gi|146342924|ref|YP_001207972.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. ORS278] gi|146195730|emb|CAL79757.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 249 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 149/236 (63%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL +Q +YL +VLR+ GD +L+FNG++GEW + I+ ++ Sbjct: 10 RLFVDAPLIEGGAVALDRNQSNYLGNVLRLGAGDQVLVFNGREGEWQATIAGRKRADLLT 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 ++ + R Q + D+ Y+F+P+K RLDY++QK+VEMG ++PV+TR+TQ + N +R+R Sbjct: 70 IQQRLRPQDQLPDITYVFAPLKHARLDYIVQKAVEMGAAVLQPVLTRHTQVSRLNGERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I AAEQC IL+L + P LE L+ + +VF DE + ++ L A Sbjct: 130 ANVIEAAEQCGILSLAEVRDPVPLERFLRERMASRLLVFCDEAAEIADPVQALRGAAANA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +LIGPEGG+ +EE+E L VT L+LGPRILR+DTA VAA+AL+QA GDW Sbjct: 190 GIDLLIGPEGGFAAEERELLLRQRQVTRLALGPRILRADTAGVAALALLQATLGDW 245 >gi|90419943|ref|ZP_01227852.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335984|gb|EAS49732.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 280 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/237 (44%), Positives = 156/237 (65%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67 RL++D L +T A+ Q +YL +V+R+ EG +L FNG+DGEW + + K + Sbjct: 42 RLYLDTDLVAETPVPATPVQANYLLNVMRLGEGAQVLAFNGRDGEWRCELVKAAKKKLDL 101 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + R QT +D+ Y+F+P+K RLDYM+QK+VEMG G ++PV+T++ Q T N +R+ Sbjct: 102 VPRERVRDQTPPADLHYLFAPLKHARLDYMVQKAVEMGAGVLQPVMTQHVQATRLNTERM 161 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC IL++P P LL WD +++F DE + + ++ L A+ Sbjct: 162 RANAIEAAEQCGILSIPECREPVKFNDLLDRWDSGRRLIFCDERADAASPIDTLRALPEG 221 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ A++IGPEGG+ ++E+E L++ FVT +SLGPRILR+DTAAVAAMA++QA GDW Sbjct: 222 PH-ALVIGPEGGFSADERERLNAADFVTAISLGPRILRADTAAVAAMAVLQAAIGDW 277 >gi|254703098|ref|ZP_05164926.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 3 str. 686] Length = 214 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/211 (48%), Positives = 143/211 (67%), Gaps = 2/211 (0%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 +LRMKEGD +L+FNG+DGEW + + G K + + Q+R Q K S++ Y F+P+K + Sbjct: 1 MLRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQ 60 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 LDYM+QK+VEMG G ++PVIT++TQ +R+R I AAEQC +L+LP + Sbjct: 61 LDYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAEQCGVLSLPDCREALRFD 120 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 L WD + +++F DE S++ L L + P+ +LIGPEGG+ EE++ LH LPF Sbjct: 121 RFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPF 179 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 VT + LGPRILR+DTAAVAAMALVQA+ GDW Sbjct: 180 VTAIPLGPRILRADTAAVAAMALVQAVLGDW 210 >gi|27382634|ref|NP_774163.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium japonicum USDA 110] gi|27355806|dbj|BAC52788.1| blr7523 [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 144/237 (60%), Gaps = 1/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL + DQ +YL +VLR+ G +L FNG+DGEW + I + Sbjct: 11 RLFVDAPLAQDARVPLDRDQSNYLGNVLRLAAGAEVLAFNGRDGEWQAAIEGRKRPDGLV 70 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 + Q+R Q + +D+ Y+F+P+K RLDYM+QK++EMG ++PV+TR+TQ + N +R+R Sbjct: 71 ILQQTRPQDRLADLTYVFAPLKHARLDYMVQKAIEMGAAGLQPVLTRFTQASRVNTERMR 130 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI- 187 + A+EQC IL++ + P LE L ++F DE EN ++ L Sbjct: 131 ANVVEASEQCGILSIATVAEPVPLERFLSQRAAGRLLIFCDEAAEVENPVQSLQGAREAG 190 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +LIGPEGG+ EE+ L P + L+LGPRI+R+DTAAVAA+ALVQ + GDW Sbjct: 191 QGIDVLIGPEGGFAEEERALLLRQPKILRLALGPRIMRADTAAVAALALVQTVLGDW 247 >gi|83859513|ref|ZP_00953034.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii HTCC2633] gi|83852960|gb|EAP90813.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii HTCC2633] Length = 254 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 13/249 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RL++D PL DQ HYL +V+R K GD + LFNG+DGEW ++++ K Sbjct: 6 RLYIDAPLEAGAVLDLDRDQAHYLVNVMRRKPGDGVRLFNGRDGEWRAEVASADRKRASL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ Q RSQ+ D+ F+P+K R D++++K+ E+G+ +I PVIT+ TQ+ DR+ Sbjct: 66 QIVQQRRSQSATPDMALYFAPVKKARTDFIVEKATELGVASITPVITQRTQSERVRTDRM 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177 + T A+EQ + L LP I+ P +L +LK WD ++FADE+ S+ Sbjct: 126 QALTREASEQTERLDLPVIHEPVSLTQMLKGWDEARTLMFADESGDSQTEPWGGEHGRAR 185 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E L A+L+GPEGG+ EE+ LH+ FV P+SLGPRILR+DTAA AA++ Sbjct: 186 PMAEALAGRERGGKWAMLVGPEGGFSVEERTLLHAQTFVLPVSLGPRILRADTAAAAALS 245 Query: 236 LVQAICGDW 244 + Q++ GDW Sbjct: 246 VWQSMLGDW 254 >gi|254503148|ref|ZP_05115299.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii DFL-11] gi|222439219|gb|EEE45898.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii DFL-11] Length = 264 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 165/249 (66%), Gaps = 6/249 (2%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 K ++RLF+ L + +A Q +YL +VLR+K+GD +L+FNG DGEWL+KI Sbjct: 15 KYEFKMQRLFLRHILADGARIEADRGQANYLLNVLRLKDGDYVLVFNGSDGEWLAKIQSS 74 Query: 62 GK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G+ + ++ ++R QT +D+ Y+F+P+K RLDYM+QK+VEMG G++ PV+T++TQ++ Sbjct: 75 GRRACSLQLMERTRDQTAPNDLIYMFAPLKHARLDYMVQKAVEMGAGSLMPVMTQHTQSS 134 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENS 177 N++R+ I AAEQC +L++P + P +L+ +L W +++F DE + N Sbjct: 135 RVNVERMEANVIEAAEQCGVLSVPTVLSPMSLKDVLTAWPEAHAGRKLLFCDEGEETNNP 194 Query: 178 LEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L + P +AILIGPEGG+ +E+ L L FVTP+ LGPRILR+DTAAVAA+A Sbjct: 195 LLTLVQLKENGPPPLAILIGPEGGFSKDERGLLKDLDFVTPIPLGPRILRADTAAVAALA 254 Query: 236 LVQAICGDW 244 +VQA GDW Sbjct: 255 VVQATVGDW 263 >gi|220920410|ref|YP_002495711.1| hypothetical protein Mnod_0365 [Methylobacterium nodulans ORS 2060] gi|219945016|gb|ACL55408.1| protein of unknown function DUF558 [Methylobacterium nodulans ORS 2060] Length = 267 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 106/243 (43%), Positives = 142/243 (58%), Gaps = 9/243 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLF+D P+ + Q +YL VLR EGD +L+FNG+DGEW ++I G K+ Sbjct: 10 RLFLDLPMREGMRHSLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWRAEIQPTGRKAGDL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R QT ++ Y+F+P+K RLDY+ QK+VEMG IRPVITR TQ +DR+ Sbjct: 70 ILREQTRPQTPPGNLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184 R I AAEQC ILT+P I L L + +VF DE + + L Sbjct: 130 RANAIEAAEQCGILTIPEIAEAAPLPAALSALEAERLLVFCDEDAPVADPIMTLRQAGAG 189 Query: 185 ----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +P +A++IGPEGG+ EE+ + P LSLGPRILR+DTAAVA +ALVQA+ Sbjct: 190 REGNGGLP-LAVVIGPEGGFTPEERALILDRPNTVRLSLGPRILRADTAAVAVLALVQAV 248 Query: 241 CGD 243 GD Sbjct: 249 LGD 251 >gi|149913421|ref|ZP_01901954.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b] gi|149812541|gb|EDM72370.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b] Length = 241 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67 RL+V+ PL + DQ HYL V+R GD +L FNG+DGEWL + K Sbjct: 7 RLYVEHPLGEGQTVPLNRDQAHYLFAVMRRGAGDALLAFNGRDGEWLVTVQEASKKGGVL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +VE Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 67 RVEKQTAPQRNPPDLWVLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + I AAEQC +P + L+ LL++W Q++F DE + + L A+ Sbjct: 127 QAHAIEAAEQCGGTYVPEVADLQKLDQLLQDWPEGRQLMFCDEALA--GAAQNLGAVGG- 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E+ LH+LPF P+SLGPRILR+DTAAVAAM + Q GDW Sbjct: 184 PAWAILIGPEGGFSEAERARLHALPFAHPVSLGPRILRADTAAVAAMTVWQMALGDW 240 >gi|115522898|ref|YP_779809.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris BisA53] gi|115516845|gb|ABJ04829.1| protein of unknown function DUF558 [Rhodopseudomonas palustris BisA53] Length = 258 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 146/238 (61%), Gaps = 2/238 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL TQ + +Q +YL +VLR+ G +L FNG DGEW + I + R + Sbjct: 10 RLFVDAPLVAGTQVPLTREQANYLGNVLRLSPGGRVLAFNGSDGEWQALIVGGKRLERLE 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 + Q+R Q + DV Y ++P+K RLDYM+QK+VE+G A+ PV+TR+TQ T N +R+R Sbjct: 70 MLLQTRPQDRLPDVTYAYAPLKHARLDYMVQKAVELGAAALVPVLTRFTQATRVNTERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I AAEQC IL+L + PT LE L D +VF DE + + L Sbjct: 130 ANVIEAAEQCGILSLAAVEEPTKLERWLTARDGQRLLVFCDEDAEIADPVAALAGARDRA 189 Query: 189 NVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I LIGPEGG+ EE++ L P V L+LGPRI+R+DTAAVAA+ALVQA+ GDW Sbjct: 190 QAGIDVLIGPEGGFAEEERDLLLRQPSVLRLALGPRIMRADTAAVAALALVQAVLGDW 247 >gi|302381943|ref|YP_003817766.1| hypothetical protein Bresu_0829 [Brevundimonas subvibrioides ATCC 15264] gi|302192571|gb|ADL00143.1| protein of unknown function DUF558 [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 5/237 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67 RL V PL + DQ YL V+R+K GD++L+FNG+DGEW + + + K + Sbjct: 3 RLHVTQPLAPGAAVAPTLDQSRYLTQVMRLKLGDDLLVFNGRDGEWRATLVEILKKGVIL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + E Q R Q D++ I + +K +R++ +++K+ E+G +R IT+ T H +DR+ Sbjct: 63 RAEDQVRPQAYGPDLELIVAVVKKSRVETIVEKAAELGAARVRLTITQRTNVDHVRLDRL 122 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ L +P + P L LL WD + +++F DET G+ + A+ Sbjct: 123 DAIAIEAAEQTGRLDVPTVDDPQKLGALLDGWDPSRRLMFCDETGGAPVA----SAVTES 178 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE++ L +LPF T +SLGPRILR+DTAA+AAM L QA GDW Sbjct: 179 GPWAILIGPEGGFSPEERDRLRALPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 235 >gi|296444351|ref|ZP_06886316.1| protein of unknown function DUF558 [Methylosinus trichosporium OB3b] gi|296257998|gb|EFH05060.1| protein of unknown function DUF558 [Methylosinus trichosporium OB3b] Length = 247 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 1/238 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 +RLFVD L + GD+ +YL +VLR++EGD +LLFNG+DGEWL+++ V + S Sbjct: 9 QRLFVDERLEAGARMIPDGDRLNYLLNVLRLREGDGVLLFNGRDGEWLARLEKVTRRSAE 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++R QT D+ Y F+P+K RLDYM QK+ EMG + P+ITR TQ N+ R Sbjct: 69 LVATTRAREQTAPCDLHYCFAPLKHARLDYMAQKATEMGASRLVPIITRRTQARRVNLTR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC +L +P + +L+ L + +VF DE + + L A Sbjct: 129 LRANAIEAAEQCGVLGVPEVAEEVSLDAFLAGLCASRLLVFCDEAAEIADPVAALRAAPE 188 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A++IGPEGG+ EE+ + S V L+LGPRILR+DTAAVAA+A+VQ GDW Sbjct: 189 HEGIAVIIGPEGGFDEEERRAILSAGKVARLALGPRILRADTAAVAALAIVQTTIGDW 246 >gi|197104001|ref|YP_002129378.1| hypothetical protein PHZ_c0535 [Phenylobacterium zucineum HLK1] gi|196477421|gb|ACG76949.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 239 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 137/237 (57%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV L + Q YLA V+R K GD + +FNG+DGEW + ++ VGK ++ Sbjct: 3 RLFVTHDLSAGAELALDEGQSRYLAAVMRAKAGDELRVFNGRDGEWRALVAAVGKRAVTL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V +R Q D+ + + +K L+ +++K+ E+G IRPV+T T H ++R+ Sbjct: 63 QVIDPARPQAPGPDLDLVVALVKRAPLETIVEKAAELGARRIRPVVTERTNADHTRVERL 122 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R A+EQ L +P + P LE LL W+ +++F DE + LE L A Sbjct: 123 RAIATEASEQTGRLDVPEVTEPVKLERLLAEWEPGRRLLFCDEAGDARPVLEALEGAAG- 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+E L +LP+ P SLGPRILR+DTAA++A+AL QA GDW Sbjct: 182 -PWAILIGPEGGFSPREREALRALPYAVPASLGPRILRADTAAISALALWQAAAGDW 237 >gi|209886372|ref|YP_002290229.1| hypothetical protein OCAR_7260 [Oligotropha carboxidovorans OM5] gi|209874568|gb|ACI94364.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 246 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 105/236 (44%), Positives = 145/236 (61%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL + + +Q HYL +VLR+ D +L+FNG+DGEW ++I+ + + Sbjct: 10 RLFVDAPLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQITGRKRLEQLT 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 Q+R Q D+ +F+P+K RLDYM+QK+VEMG + P +T++TQ + N++R+R Sbjct: 70 PLEQTRPQDPPCDLHLLFAPLKHARLDYMVQKAVEMGASRLTPTLTQFTQVSRINLERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I AAEQC IL LP I P L L D +VF DE + L L A+ Sbjct: 130 ANAIEAAEQCGILNLPEIDEPLPLTGRLAERDGKRLLVFCDEAAPQASPLAALKEAANDG 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +LIGPEGG+ +E+ L + P + LSLGPRILR+DTAAVAA+ALVQA GDW Sbjct: 190 GLDVLIGPEGGFSEDERAALLAQPRLVRLSLGPRILRADTAAVAALALVQAALGDW 245 >gi|89070197|ref|ZP_01157525.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516] gi|89044213|gb|EAR50364.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516] Length = 237 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 7/238 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD PL +Q HYL V+R+ EG +LLFNG+DGEW ++++ GK Sbjct: 5 RLYVDHPLGAGQTVPLIREQAHYLFGVMRLGEGAEVLLFNGRDGEWSARVAEAGKRGGTL 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+R D+ +F+P+K R D++++K+VEMG + PV T +T + DR+ Sbjct: 65 ACAAQTRPLAPPPDLWLLFAPVKKARTDFIVEKAVEMGAARLCPVQTEFTNSERIRRDRL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC T+P + L+ LL WD + +I+ DET +++ A+ Sbjct: 125 QAHAVEAAEQCGATTVPEVADLARLDRLLDGWDPSRRIMLCDETRAGDDA-----ALPAE 179 Query: 188 PNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E+ L +LPF P++LGPRILR+DTAAVAA+ L Q GDW Sbjct: 180 PGPWAILIGPEGGFSDAERARLAALPFTRPVALGPRILRADTAAVAALTLWQTQLGDW 237 >gi|92118652|ref|YP_578381.1| 16S ribosomal RNA methyltransferase RsmE [Nitrobacter hamburgensis X14] gi|91801546|gb|ABE63921.1| protein of unknown function DUF558 [Nitrobacter hamburgensis X14] Length = 261 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 5/239 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL + +Q +YL +VLR+ G N+L+FNG+DGEW + IS + Sbjct: 10 RLYVDAPLEPGGKVPLDRNQGNYLGNVLRLGSGANVLVFNGRDGEWRAAISGRKRPECLD 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 + +R+Q + D+ Y+F+P+K RLDYM+QK+VEMG+ A++PV+TR+TQ N +R+R Sbjct: 70 IVAAARAQDRLPDLHYVFAPLKHARLDYMVQKAVEMGVSALQPVLTRFTQVARVNGERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---SLEKLHAIA 185 I AAEQC IL+L + P TL+ L +V DE N +LE + A Sbjct: 130 ANVIEAAEQCGILSLAAVEEPVTLDRWLGRRAPERLLVLCDEAALVTNPAAALEPMRGAA 189 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 H + +L+GPEGG+ +E+ L + P LSLGPRILR+DTAAVAA+ALVQ + GDW Sbjct: 190 H--GIDVLVGPEGGFAEDERANLLNQPNTLRLSLGPRILRADTAAVAAIALVQTVLGDW 246 >gi|288957600|ref|YP_003447941.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp. B510] gi|288909908|dbj|BAI71397.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp. B510] Length = 259 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 139/240 (57%), Gaps = 8/240 (3%) Query: 9 RLFVDFPLCIKTQGKASG---DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 RL+VD PL +G++ G ++ H+L HVLR+ GD + +FNG+DGEW + I GK Sbjct: 8 RLYVDSPL---AEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGW 64 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + Q R Q D+ +F+P+K R+D++ +K+ EMG+ + PV TR T N+ Sbjct: 65 CSLTLAEQRREQDTGPDLWLVFAPLKKGRIDFVAEKATEMGVSRLCPVFTRRTDPNRVNL 124 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DR+R + AAEQC+ L++P + L+ L W ++ E + E L Sbjct: 125 DRLRANAVEAAEQCERLSVPDLADALPLDRALAAWPAERRLYLCAEAGAARPIAEVLRDA 184 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A P A+L+GPEGG+ E + L LPFV P+ LGPRILR+DTA VAA+A Q++ GDW Sbjct: 185 AAGP-AALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQSLAGDW 243 >gi|260575962|ref|ZP_05843957.1| protein of unknown function DUF558 [Rhodobacter sp. SW2] gi|259021888|gb|EEW25189.1| protein of unknown function DUF558 [Rhodobacter sp. SW2] Length = 245 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/238 (41%), Positives = 139/238 (58%), Gaps = 2/238 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL + + DQ +YL V+R+ GD +LLFNG+DGEW ++ GK Sbjct: 7 RLYVDQPLGVGQPVPLNADQANYLFAVMRLGRGDAVLLFNGRDGEWRGVVAEAGKRGGVL 66 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V + Q+R D+ +F+PIK R D++++K+ E+G I PV TR+T DR+ Sbjct: 67 VCDAQTRPLQMPPDLWLLFAPIKKARTDFIVEKAAELGASRILPVQTRFTNAERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAH 186 + + + AAEQC +P + L+ +L W ++++ DE G ++L L A A Sbjct: 127 QAHAVEAAEQCGGTFVPEVCDLQGLDKVLDTWPAERRLLWCDEHMVGGSSALTGLLATAR 186 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L LP V P+SLGPRILR+DTAAVAA+ L QA GDW Sbjct: 187 GGPWAILIGPEGGFAESEQARLRGLPQVVPISLGPRILRADTAAVAALVLWQAALGDW 244 >gi|167644342|ref|YP_001682005.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter sp. K31] gi|167346772|gb|ABZ69507.1| protein of unknown function DUF558 [Caulobacter sp. K31] Length = 238 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV PL + + DQ YL V+R+ GD IL+FNG+DGEW ++ GK Sbjct: 3 RLFVPHPLKVGAGVAPTVDQSRYLTAVMRLNVGDEILVFNGQDGEWRCGLTEAGKRGCLL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + E Q+R Q D+ + + +K R++ +++K+ E+G +R TR T + R+ Sbjct: 63 RCEEQTREQDHAPDLDLVVAMVKRGRVETIVEKAAELGARRVRLTQTRRTNVDFLKLGRL 122 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ L +P I P L+ +L WD ++VF DE + +E + Sbjct: 123 DAIAIEAAEQTGRLDVPVIDDPMKLDKILDTWDPARRLVFCDEGGDARTMIEAVTGTGA- 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE++ L SLPFV P+SLGPRILR+DTAA+AAM L QA GDW Sbjct: 182 -PAAILIGPEGGFAPEERKRLRSLPFVIPVSLGPRILRADTAAIAAMTLWQAAAGDW 237 >gi|119383376|ref|YP_914432.1| hypothetical protein Pden_0624 [Paracoccus denitrificans PD1222] gi|119373143|gb|ABL68736.1| protein of unknown function DUF558 [Paracoccus denitrificans PD1222] Length = 239 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLF+D PL + + DQ HYL+ V+R GD IL+FNG+DGEWL++I + K Sbjct: 5 RLFIDHPLAEGQGIELNADQSHYLSSVMRQGAGDEILVFNGQDGEWLARIERIAKRGGAL 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 65 EALRQTAPQLNPPDLWLVFAPIKKARTDFIVEKAAEMGAARILPVQTDHTNSERIRQDRL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L LL WD +I++ADE + L + Sbjct: 125 QAHAVEAAEQCGGTHVPEVCDLVPLSRLLDGWDAGRRILWADEALAGPAQV--LSGLPRG 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E++ L ++ VT ++LGPRILR+DTAAVA++AL QA GDW Sbjct: 183 P-WAILIGPEGGWSESERKRLSAMDCVTRIALGPRILRADTAAVASLALWQASLGDW 238 >gi|84685244|ref|ZP_01013143.1| hypothetical protein 1099457000257_RB2654_10264 [Maritimibacter alkaliphilus HTCC2654] gi|84666976|gb|EAQ13447.1| hypothetical protein RB2654_10264 [Rhodobacterales bacterium HTCC2654] Length = 241 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 137/237 (57%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFVD L D+ HYL V+R GD + LFNG+DGEW ++++ GK + Sbjct: 8 RLFVDESLREGQTIPLERDKAHYLFGVMRQAVGDRVALFNGRDGEWTAEVTLAGKRNGVL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+ Q D+ +F+PIK R D++++K+ EMG I PV+T +T + +DR+ Sbjct: 68 TCLGQAAPQLDPPDLWLMFAPIKKARTDFIVEKAAEMGASRIVPVLTEFTNSERVRVDRL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + P L+ LL WD +++F DE EN + L A Sbjct: 128 QAHAVEAAEQCGGTFVPEVAEPEKLDRLLDGWDGARRLMFCDEALAGEN--KPLSGAAGA 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E++ LH + +SLGPRILR+DTAAVAAM L Q+ GDW Sbjct: 186 P-WAILIGPEGGFSDAERKRLHGMESAVSVSLGPRILRADTAAVAAMTLWQSALGDW 241 >gi|154248025|ref|YP_001418983.1| 16S ribosomal RNA methyltransferase RsmE [Xanthobacter autotrophicus Py2] gi|154162110|gb|ABS69326.1| protein of unknown function DUF558 [Xanthobacter autotrophicus Py2] Length = 242 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66 +RL+VD L + +Q HY+A+V+R+ G ++LLFNG+DGEW ++++ + +R Sbjct: 9 QRLYVDAELGPDASVLLAPEQAHYVANVIRLAVGQDLLLFNGRDGEWRATRVAGGKRDVR 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 F+V Q R Q + ++Y F+P+K RLDYM+QK+VEMG G + PVITRYTQ + N+DR Sbjct: 69 FEVSAQVRPQPEAPTLEYAFAPLKHARLDYMVQKAVEMGAGVLSPVITRYTQVSRINLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + + AAEQC IL+LP + P L L +VF DE + + L Sbjct: 129 MAANAVEAAEQCGILSLPHVAEPRPLAQWLDALPAERVLVFCDEAAADHDPIHALRTAPS 188 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P V++LIGPEGG+ +E+ + P LSLGPRILR+DT Sbjct: 189 GP-VSVLIGPEGGFSPDERALIA--PRAVTLSLGPRILRADT 227 >gi|126727781|ref|ZP_01743611.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium HTCC2150] gi|126702908|gb|EBA02011.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium HTCC2150] Length = 246 Score = 184 bits (468), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 139/242 (57%), Gaps = 4/242 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L RL+ D PL DQ HYL V+R K GD + LFNG+DGEW K+ + K Sbjct: 4 LSRLYTDHPLAQGHNIPLERDQAHYLFGVMRRKLGDEVELFNGRDGEWRGKVVHANKHRG 63 Query: 67 -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +V +Q+R D+ +F+PIK R D++++K+ EMG I PV+T YT + + Sbjct: 64 ILEVTHQTRPLQMPPDLWLMFAPIKKARTDFIVEKATEMGAARIVPVMTEYTNSDRVRQE 123 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLE--KLH 182 +++ + + AAEQC +P + L+ +L NW Q++F DE G L+ KL Sbjct: 124 KMQIHAVEAAEQCGGTYVPEVAELQKLDRMLDNWPDGRQLLFCDEGLIGRPTGLDQSKLT 183 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 A+ AILIGPEGG+ +E+ L SL FVT SLGPRILR+DTAAVAA+ L Q G Sbjct: 184 AVNKTGPWAILIGPEGGFSEKERNRLASLDFVTTQSLGPRILRADTAAVAALTLWQRELG 243 Query: 243 DW 244 DW Sbjct: 244 DW 245 >gi|296533751|ref|ZP_06896298.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265927|gb|EFH12005.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 242 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 143/239 (59%), Gaps = 4/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + RL V L + Q HYL V+R KEGD + LFNG+DGEWL++I+ + K + Sbjct: 3 IPRLHVAADLAEAAEIPGEPGQGHYLGQVMRRKEGDPVHLFNGRDGEWLARIAALRKDRV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +F+ E + R Q D++ + +P+K + +D++++K+ E+G+ +IRPV T N++ Sbjct: 63 QFRPESRLRPQQSGPDLRLLLAPVKRDAMDWIVEKATELGVRSIRPVFTARCVIGRVNLE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ T AAEQC+ L +P I P L L WD +V + G SL + A Sbjct: 123 RLSTIAREAAEQCERLDVPEIAAPLDLHAALDAWDGAPLLV--GDARGKAPSLNVVLA-G 179 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P + +L+GPEGG+ +E + + PFV+P +LGPRILR++TAAVA +A++QA+ GDW Sbjct: 180 KAPPLGLLVGPEGGFTDQELDAVRRRPFVSPAALGPRILRAETAAVAGLAVLQALAGDW 238 >gi|163758378|ref|ZP_02165466.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43] gi|162284667|gb|EDQ34950.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43] Length = 250 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 149/245 (60%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + L+RL++D PL + + +Q HYL VLRM E +L+FNG+DGE+LS + Sbjct: 7 MRANFKLQRLYLDAPLVPRQRAAMRKEQAHYLLTVLRMAEDQQVLVFNGRDGEFLSALKP 66 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ Q+R Q + ++F+P+K RL+Y++QK+ EMG+ I P T +TQ Sbjct: 67 LSKKAAELEIVEQTRPQPPLPRLDFLFAPLKVGRLEYLVQKATEMGVRQITPAFTDHTQL 126 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N R+ + AAEQC L +P + L+ LL WD +I+F +E+ N + Sbjct: 127 HKVNAARLEANILEAAEQCGNLAIPQLQEAQKLDALLDGWDPARRIIFCNESQAGNNPTD 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A+ ++A+L+GPEGG+ E+E L +LPF+T + LGPRILR+DTAAVAA+ VQ Sbjct: 187 ILSAVEER-DLALLVGPEGGFSDRERERLLALPFLTAIPLGPRILRADTAAVAALTAVQM 245 Query: 240 ICGDW 244 GDW Sbjct: 246 TIGDW 250 >gi|299134206|ref|ZP_07027399.1| protein of unknown function DUF558 [Afipia sp. 1NLS2] gi|298590953|gb|EFI51155.1| protein of unknown function DUF558 [Afipia sp. 1NLS2] Length = 255 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 105/237 (44%), Positives = 140/237 (59%), Gaps = 1/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL + +Q HYL +VLR+ GD+IL+FNG DGEW ++I + Sbjct: 10 RLFVDAPLDAGGRVALEREQGHYLGNVLRLGTGDSILVFNGHDGEWRAQIEGRKRPEHLT 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 + Q+R Q D+ +F+P+K RLDYM+QK+VEMG + P +T++TQ + N +R+R Sbjct: 70 LTEQTRPQETPCDLHLLFAPLKHARLDYMVQKAVEMGASLLAPTLTQFTQVSRVNTERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHI 187 I AAEQC IL LP I P L L D ++F DE + L L Sbjct: 130 ANAIEAAEQCGILNLPGINEPQPLARRLSERDGQRLLIFCDEAAPQCDPLAALGMGAGKT 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG+ EE+ L P + LSLGPRILR+DTAAVAA+ALVQA GDW Sbjct: 190 KGLDVLVGPEGGFSEEERALLLRQPRLMRLSLGPRILRADTAAVAALALVQAALGDW 246 >gi|298290358|ref|YP_003692297.1| hypothetical protein Snov_0345 [Starkeya novella DSM 506] gi|296926869|gb|ADH87678.1| protein of unknown function DUF558 [Starkeya novella DSM 506] Length = 260 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 102/233 (43%), Positives = 146/233 (62%), Gaps = 2/233 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 +RL+VD L T + D+ HY+A V+R++ G + LFNG+DGEW + G+ Sbjct: 18 QRLYVDDDLGEGTLVRLDRDRAHYVADVIRLEVGGALHLFNGRDGEWRAVREPAGRREAV 77 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E + R Q + +D+ Y+F+P+K RLDYM+QK+VEMG G + PV+TR TQ + N +R Sbjct: 78 LRCEARLRRQAEPADLDYVFAPLKHARLDYMVQKAVEMGAGRLVPVMTRRTQASRVNTER 137 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC IL+LP + P+ L L + ++VF DE + L +L Sbjct: 138 MRANVIEAAEQCGILSLPAVLEPSALARWLADLAPERRLVFCDEAAPEADPLAELREAVA 197 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 P +A+LIGPEGG+ EE+ L + P LSLGPRILR+DTAAVAA+A+V+A Sbjct: 198 GP-LAVLIGPEGGFDEEERRLLKARPGTIVLSLGPRILRADTAAVAALAMVEA 249 >gi|316932695|ref|YP_004107677.1| hypothetical protein Rpdx1_1321 [Rhodopseudomonas palustris DX-1] gi|315600409|gb|ADU42944.1| protein of unknown function DUF558 [Rhodopseudomonas palustris DX-1] Length = 257 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 146/239 (61%), Gaps = 3/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD L Q DQ +YL +VLR+ G ++L FNG+DGEW + I+ + + Sbjct: 10 RLFVDATLAPGAQVPLERDQSNYLGNVLRLGAGADVLTFNGRDGEWRATIAGRKRPEALE 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V Q+R Q + DV Y+F+P+K RLDYM QK+VEMG G +RPV+T++TQ N DR+R Sbjct: 70 VAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLRPVLTQHTQVHRLNTDRMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSL--EKLHAIA 185 I AAEQC IL+L + P L+ FL +VF DE + + A Sbjct: 130 ANVIEAAEQCGILSLAEVGEPIGLDRFLAGRASGERLLVFCDEDAEIADPVAALAAARPA 189 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +L+GPEGG+ +EE++ L P + L+LGPRI+R+DTAAVAA+ALVQA+ GDW Sbjct: 190 ATKGVDLLVGPEGGFSAEERDVLLKQPNILRLALGPRIMRADTAAVAALALVQAVVGDW 248 >gi|295687718|ref|YP_003591411.1| hypothetical protein Cseg_0273 [Caulobacter segnis ATCC 21756] gi|295429621|gb|ADG08793.1| protein of unknown function DUF558 [Caulobacter segnis ATCC 21756] Length = 238 Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 132/237 (55%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV L + DQ YL V+R+ GD +LLFNG+DGEW + I K Sbjct: 3 RLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGDEVLLFNGRDGEWRASIVEATKRGCLL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 K + Q+R D+ I + +K R++ +++K+ E+G +R ITR T + R+ Sbjct: 63 KADVQTRPMDTGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLGRL 122 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + AAEQ L +P I P L+ +L WD ++VF DE + ++E L Sbjct: 123 DAIAMEAAEQTGRLDVPEIVDPEKLDKILDGWDPTRRLVFCDEGGDARPAIEALAGTGA- 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE+E L L FVTP+SLGPRILR+DTAA++AM L QA GDW Sbjct: 182 -PAAILIGPEGGFAPEERERLRGLSFVTPVSLGPRILRADTAAISAMTLWQASAGDW 237 >gi|329888452|ref|ZP_08267050.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta ATCC 11568] gi|328847008|gb|EGF96570.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta ATCC 11568] Length = 239 Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 3/219 (1%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85 DQ YL V+R+K GD +L+FNG+DGEW ++ V K + + E Q R Q D++ I Sbjct: 21 DQSRYLTQVMRLKAGDELLVFNGRDGEWRVSVAEVLKKGVILRAEEQMRPQVYGPDLELI 80 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 + +K R++ +++K+ E+G +R +T T +DR+ AAEQ L +P Sbjct: 81 VAVVKKARVETIVEKAAELGAKRVRLALTHRTNADRLRLDRLDAIAEEAAEQTGRLDVPV 140 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + P L+ LL W+ +++F DET G+ + A AILIGPEGG+ EE Sbjct: 141 VDDPVKLDALLDGWEAGRRLMFCDETGGAPAASALTQA--GDGKWAILIGPEGGFSPEEG 198 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E L SLPF T +SLGPRILR+DTAA+AAM L QA GDW Sbjct: 199 ERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 237 >gi|260431629|ref|ZP_05785600.1| surface protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415457|gb|EEX08716.1| surface protein [Silicibacter lacuscaerulensis ITI-1157] Length = 241 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD PL + +Q HYL V+R+ G + LFNG+DGEWL++++ GK Sbjct: 6 RLYVDHPLGAGQSVPLTREQAHYLFGVMRLAVGGQVALFNGRDGEWLAEVAEAGKRGGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+R D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 SCLEQTRPLQLPPDLWLLFAPIKKARTDFIVEKAAEMGAAKIMPVQTAFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ LL NW Q++F DE S +L A Sbjct: 126 QAHAVEAAEQCGGTFVPEVCDLQRLDKLLDNWPDGRQLMFCDEA--EAGSALRLAAQDKG 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E++ L LPF +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 184 RPWAILIGPEGGFSDAERQRLKDLPFTHVVSLGPRILRADTAAVAAMTLWQQALGDW 240 >gi|146276272|ref|YP_001166431.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides ATCC 17025] gi|145554513|gb|ABP69126.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC 17025] Length = 257 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 142/250 (56%), Gaps = 14/250 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD PL + + DQ HYL V+R+ G +LLFNG+DGEW ++++ GK Sbjct: 7 RLYVDQPLGPGQPVRLTQDQAHYLFGVMRLARGAAVLLFNGRDGEWRAEVTEAGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+ + D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 TCAAQTAPLRRPPDLWLMFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--LEKLHAIA 185 + + + AAEQC +P + L+ LL W + +I++ DE + LE AI Sbjct: 127 QAHAVEAAEQCGGTYVPEVAELAALDRLLSGWPADRRIMWCDENLLGARAGLLEGAGAIE 186 Query: 186 -----HIPNV------AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 P+ AILIGPEGG+ +E+ L +P V P+SLGPRILR+DTAAVAA+ Sbjct: 187 ARGFEEAPSQPSPGPWAILIGPEGGFSEDEQARLRRMPQVVPVSLGPRILRADTAAVAAL 246 Query: 235 ALVQAICGDW 244 L Q++ GDW Sbjct: 247 TLWQSVLGDW 256 >gi|83309343|ref|YP_419607.1| 16S ribosomal RNA methyltransferase RsmE [Magnetospirillum magneticum AMB-1] gi|82944184|dbj|BAE49048.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 252 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 148/237 (62%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFV+ PL + DQ HYLA V+R G+ +LLFNG+DGEWL++I+ + K+ Sbjct: 11 RLFVEAPLSAGMAVALTRDQTHYLASVMRAAVGELVLLFNGRDGEWLARIAALAKAGAAL 70 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V E Q+R Q + D+ + +P+K +R D +++K+ E+G+ + PV TR T N DR+ Sbjct: 71 VPESQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSRLWPVFTRRTNAGRVNADRL 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + AAEQC+ LT+P + P L+ +L W ++F DE G E L+ ++ Sbjct: 131 HAHLVEAAEQCERLTVPDLAEPAALDKVLAGWPAERVLLFLDEGGGGVPLAEVLNGLSGQ 190 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+L+GPEGG+ EE+ + S PF + LGPRILR++TAA+AA+A+VQA+ GDW Sbjct: 191 -KLALLVGPEGGFDGEERRLIASRPFARAVGLGPRILRAETAAIAALAVVQALNGDW 246 >gi|163732851|ref|ZP_02140296.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149] gi|161394211|gb|EDQ18535.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149] Length = 247 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 136/237 (57%), Gaps = 5/237 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL S DQ HYL V+R+ G ++L+F+G+ GEWL++++ GK Sbjct: 14 RLYVDHPLGEGQSVPVSRDQAHYLFGVMRLGVGAHVLVFDGQSGEWLAEVAQAGKRAGEL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+VEMG I PV T +T DR+ Sbjct: 74 HLLRQTRPLLMPPDLWLLFAPIKKARTDFIVEKAVEMGAARIMPVQTEFTNAGRIQRDRL 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+++L WD I+F DE E + E L + Sbjct: 134 QAHAVEAAEQCGGTFVPKVDDLARLDWVLGGWDTTRSIMFCDE----ERAGESLTLLQKA 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E E L SL P+SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 190 GPWAILIGPEGGFSPREHEKLGSLAHAHPVSLGPRILRADTAAVAALTVWQQALGDW 246 >gi|209966873|ref|YP_002299788.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum centenum SW] gi|209960339|gb|ACJ00976.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 260 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLFVD PL G + HYL VLRM+ G+ +L FNG+DGEWL++++ +GKS Sbjct: 8 RLFVDAPLSEGAAVPLEGGRAHYLRTVLRMQPGERVLAFNGRDGEWLAEVAQLGKSGGTL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + R QT + +F+P+K R D + +K+ E+G + PV TR T N++R+ Sbjct: 68 TALRRERDQTGEEGPWLLFAPLKGGRSDSVAEKATELGAAVLHPVFTRRTDVGRVNLERL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + AAEQC+ L++P + L L+ WD + A E+ + ++ + A Sbjct: 128 AANAVEAAEQCERLSVPEVREACPLFKALEGWDPARVLFVAAESGQAMPAVSAVTAQRGR 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P A L+GPEGG+ E + L LPFV P+ LGPR+LR+DTAA A +A+ QA+ GDW Sbjct: 188 P-AAWLLGPEGGFDRAELDGLLHLPFVVPVGLGPRVLRADTAAFAVLAVWQALAGDW 243 >gi|91978577|ref|YP_571236.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris BisB5] gi|91685033|gb|ABE41335.1| protein of unknown function DUF558 [Rhodopseudomonas palustris BisB5] Length = 251 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 145/239 (60%), Gaps = 3/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD L + DQ +YL +VLR+ G +L FNG+DGEW + I+ + + Sbjct: 10 RLFVDAALAPGARVPLDRDQSNYLGNVLRLGAGAPVLTFNGRDGEWRAAIAGRKRPEELE 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V Q+R Q + D+ Y+F+P+K +RLDYM QK+VEMG G ++PV+TR+TQ N DR+R Sbjct: 70 VTDQTRPQDRLPDLTYVFAPLKHSRLDYMTQKAVEMGAGRLQPVLTRHTQVHRLNTDRMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQC IL++ + LE +L D + F DE + + L Sbjct: 130 ANAIEAAEQCGILSVAAVEESIALERWLAARADGGRLLAFCDEDAEIADPVAALQGARAT 189 Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG+ +EE+E L P + L+LGPRI+R+DTAAVAA+ALVQA+ GDW Sbjct: 190 AAQGIDLLVGPEGGFSNEERELLLRQPNILRLALGPRIMRADTAAVAALALVQAVIGDW 248 >gi|23016538|ref|ZP_00056293.1| COG1385: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 254 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 151/239 (63%), Gaps = 6/239 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL + DQ HYLA V+R + G+ +LLFNG DGEW ++I+ + K+ Sbjct: 11 RLFVDAPLSEGVAVALTRDQTHYLASVMRAELGEMVLLFNGTDGEWAARIAALPKAGAAL 70 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V E Q+R Q + D+ + +P+K +R D +++K+ E+G+ + PV TR T N DR+ Sbjct: 71 VPERQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSLLMPVFTRRTNAGRVNTDRL 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R + I AAEQC+ L++P + P L+ +L +W + ++F DE GS L H + + Sbjct: 131 RAHLIEAAEQCERLSVPQLSEPCPLDKVLADWPTDRILLFLDE-GGSGIPLA--HVLNGM 187 Query: 188 PN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P +A+L+GPEGG+ +EE+ + S F + LGPRILR++TAA+AA+A+VQA+ GDW Sbjct: 188 PGEKLALLVGPEGGFDAEERRLIGSKSFARAVGLGPRILRAETAAIAALAVVQALTGDW 246 >gi|86748970|ref|YP_485466.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris HaA2] gi|86571998|gb|ABD06555.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 251 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 148/239 (61%), Gaps = 3/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLF+D L + + DQ +YL +VLR+ G +L FNG+DGEW + ++ + + Sbjct: 10 RLFLDAALVAGARVPLNRDQSNYLGNVLRLSSGAPVLAFNGRDGEWRAVLAGRKRPEELE 69 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V Q+R Q + D+ Y F+P+K RLDYM QK+VEMG G ++PV+TR+TQ N +R+R Sbjct: 70 VAEQTRPQDRLPDLTYAFAPLKHARLDYMAQKAVEMGAGRLQPVLTRHTQVHRLNTERMR 129 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAI--A 185 I AAEQC IL+L + P LE L+ + + +VF DE + + L A Sbjct: 130 ANVIEAAEQCGILSLAGVEEPVALERWLETRAESGRLLVFCDEDAEVADPVAALQGARPA 189 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG+ ++E++ L P + L+LGPRI+R+DTAAVAA+ALVQA+ GDW Sbjct: 190 AAQGIDLLVGPEGGFAADERDVLLRQPNILRLALGPRIMRADTAAVAALALVQAVAGDW 248 >gi|254463111|ref|ZP_05076527.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium HTCC2083] gi|206679700|gb|EDZ44187.1| conserved hypothetical protein TIGR00046 [Rhodobacteraceae bacterium HTCC2083] Length = 240 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 100/238 (42%), Positives = 135/238 (56%), Gaps = 6/238 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67 RLFVD PL S Q HYL V+R+ G + LFNGKDGEW +I GK Sbjct: 6 RLFVDQPLAEGNCVSVSQAQAHYLFGVMRLAVGGAVSLFNGKDGEWRCEILEAGKRKGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q++ D+ F+PIK R D++++K+ EMG I PV T +T + +R+ Sbjct: 66 RCTVQTKPLQMPPDLWLCFAPIKKTRTDFIVEKATEMGASKICPVQTEFTNSERIKQERL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + + L +L +W QI+F DET G +SL A A Sbjct: 126 QAHAVEAAEQCGGTYVPEVIALSKLSTMLDHWPEERQIMFCDETELGVASSL----ASAS 181 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E++ LHS+P +SLGPRILR+DTAAVAAM + QA GDW Sbjct: 182 RGPWAILIGPEGGFSPAERKRLHSMPEAHVVSLGPRILRADTAAVAAMTIWQAALGDW 239 >gi|297183994|gb|ADI20114.1| uncharacterized protein conserved in bacteria [uncultured alpha proteobacterium EB080_L06A09] Length = 243 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I S + RLFVD PL DQ +YL +V+R+ GD I +FNGKDGEW + + + Sbjct: 1 MNIRSKI-RLFVDTPLGEGQSILLDRDQANYLFNVMRLNIGDYISVFNGKDGEWQADVLH 59 Query: 61 VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K V +YQS Q D+ +F+PIK R D++++K+ EMG+ I PV T YT + Sbjct: 60 ANKRKGILVAKYQSMQQLNPPDLWLLFAPIKKTRTDFIVEKATEMGVSRIFPVNTDYTNS 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R+++++I AAEQC +P + + L +LK+W + ++F DE E Sbjct: 120 DRIKQSRLQSHSIEAAEQCGGTYVPPVDELSKLTSILKDWPKDRCLIFCDENKVGEAV-- 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K + AILIGPEGG+ E + L SL FVT +SLGPRILR+DTA VAA+A+ Q Sbjct: 178 KTFKSSVCDKWAILIGPEGGFSKNEIKYLKSLEFVTSISLGPRILRADTAVVAALAIWQK 237 Query: 240 ICGDW 244 GDW Sbjct: 238 EIGDW 242 >gi|16127645|ref|NP_422209.1| hypothetical protein CC_3415 [Caulobacter crescentus CB15] gi|221236464|ref|YP_002518901.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter crescentus NA1000] gi|13425129|gb|AAK25377.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965637|gb|ACL96993.1| surface protein [Caulobacter crescentus NA1000] Length = 238 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 131/237 (55%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67 RLFV L + DQ YL V+R+ G +LLFNG+DGEW + + + Sbjct: 3 RLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGAELLLFNGRDGEWRATLVEATKRGCLL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 K E Q+R T D+ I + +K R++ +++K+ E+G +R ITR T + R+ Sbjct: 63 KAEEQTRPMTLGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLGRL 122 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + AAEQ L +P + P L+ +L WD ++VF DE + +E L Sbjct: 123 DAIAMEAAEQTGRLDVPEVADPEKLDKILDAWDPARRLVFCDEGGDARPMIEALSGTTG- 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE+E L L FVTP+SLGPRILR+DTAA++AM L QA GDW Sbjct: 182 -PAAILIGPEGGFAPEERERLRGLAFVTPVSLGPRILRADTAAISAMTLWQAAAGDW 237 >gi|83950615|ref|ZP_00959348.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM] gi|83838514|gb|EAP77810.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM] Length = 234 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 131/222 (59%), Gaps = 4/222 (1%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 DQ +YL +V+R+ +G ++ LFNG+DG W ++++ GK +V Q+ Q D+ + Sbjct: 4 DQANYLFNVMRLDQGASVTLFNGRDGAWRAEVAERGKRGGALQVAEQTAPQRNPPDLWLL 63 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+PIK R D++++K+ EMG I PV T +T + DR++ + I AAEQC +P Sbjct: 64 FAPIKKARTDFIVEKAAEMGASRILPVQTEFTNSERIRQDRLQAHAIEAAEQCGGTFVPE 123 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENS-LEKLHAIAHIPNV--AILIGPEGGYHS 202 + L+ LL +W Q++F DE S L A + AILIGPEGG+ Sbjct: 124 VADLARLDRLLSDWPEERQLMFCDEALFDRPSPLTNGDATSSGTGTPWAILIGPEGGFSD 183 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E+ LH+LPF P+SLGPRILR+DTAAVAAM L Q GDW Sbjct: 184 AERSRLHALPFAHPVSLGPRILRADTAAVAAMTLWQDRLGDW 225 >gi|114570791|ref|YP_757471.1| 16S ribosomal RNA methyltransferase RsmE [Maricaulis maris MCS10] gi|114341253|gb|ABI66533.1| protein of unknown function DUF558 [Maricaulis maris MCS10] Length = 254 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 12/248 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RLF+D PL + + HYL +V+R EGD + +FNG+DGEW + I++ K Sbjct: 6 RLFIDAPLSASAAIPLAREDAHYLINVMRRGEGDVVRVFNGRDGEWSAVIAHASRKGAGL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V Q+R Q D+ +F+P++ ++ + +++K+ E+G I PV+T TQ+ +R+ Sbjct: 66 TVADQTRPQQGVPDLWLMFAPVRRSKTELIVEKATELGAAVIAPVVTERTQSDRIKFERL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-----------GSEN 176 + T AAEQ + L LP + L +L NW + ++F DE+ G Sbjct: 126 QAITKEAAEQTERLDLPELRTSEKLAAVLDNWPDDRLLIFCDESGDEADAAWGGARGRGQ 185 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + A A AILIGPEGG+ E++ L SL V P++LGPRILR++TAA+AA+ + Sbjct: 186 PMAAALAGAGDRPAAILIGPEGGFSPAERDRLRSLQHVVPVTLGPRILRAETAAIAALTI 245 Query: 237 VQAICGDW 244 Q+ CGDW Sbjct: 246 WQSTCGDW 253 >gi|323137857|ref|ZP_08072932.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242] gi|322396860|gb|EFX99386.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242] Length = 246 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 2/238 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 +RLFV+ L + +YL +VLR++EGD I+LFNG+DGE+ +++ V + S R Sbjct: 9 QRLFVESALAPGADVLPPAEALNYLLNVLRLREGDPIVLFNGRDGEFRAELREVTRRSAR 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V Q R QT ++D+ Y F+P+K RLDYM QK+ EMG G + PV+TR TQ N R Sbjct: 69 LAVGAQLRPQTPRADLDYCFAPLKQARLDYMAQKATEMGAGRLLPVVTRRTQVRRVNTSR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R + AAEQC +L +P + L L + +VF DE N + L A Sbjct: 129 LRANAVEAAEQCGVLAVPEVGEAADLPEFLAGFPAGRLLVFCDEDAPIANPVAAL-AGRE 187 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++L+GPEGG+ E+E++ LP V LSLGPR+LR+DTAAVAA+A+VQA GDW Sbjct: 188 GEGISLLVGPEGGFDDVERESIARLPNVVRLSLGPRVLRADTAAVAALAVVQATIGDW 245 >gi|260427823|ref|ZP_05781802.1| surface protein [Citreicella sp. SE45] gi|260422315|gb|EEX15566.1| surface protein [Citreicella sp. SE45] Length = 269 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 141/245 (57%), Gaps = 4/245 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 +++ + RLFVD PL + +Q HYL V+R+ G ILLFNG+DGEWL +++ Sbjct: 27 VRLMTAKVRLFVDHPLGAGQPVPLTREQAHYLFSVMRLGAGAPILLFNGRDGEWLCEVTE 86 Query: 61 VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK V + Q+R Q D+ +F+PIK R D++++K+VE+G+ + PV T++T + Sbjct: 87 AGKRGGEAVCDTQTRPQQMPPDLWLLFAPIKKARTDFIVEKAVELGVRRLLPVQTQFTNS 146 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR++ + + AAEQC L +P + L+ LL +W ++F DE +E Sbjct: 147 ERIRQDRLQAHAVEAAEQCGALFVPEVAELARLDRLLADWPAGRALLFCDE---AEAGSR 203 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A A+LIGPEGG+ E+ L ++ ++LGPRILR+DTA V+A+ L Q Sbjct: 204 AAALDAAPAPAAVLIGPEGGFADAERARLGAMDETRVIALGPRILRADTATVSAITLWQV 263 Query: 240 ICGDW 244 CGDW Sbjct: 264 ACGDW 268 >gi|254421059|ref|ZP_05034783.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas sp. BAL3] gi|196187236|gb|EDX82212.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas sp. BAL3] Length = 298 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 143/287 (49%), Gaps = 46/287 (16%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + + RL V PL + DQ YL V+R+K GD +L+FNG+DGEW ++ V Sbjct: 10 KADMIRLHVPSPLAAAAAVAPTLDQSRYLTQVMRLKVGDELLVFNGRDGEWRCTVAEVLK 69 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K + + E Q+R QT D++ I + +K R++ +++K+ E+G +R V+T+ T Sbjct: 70 KGVILRAEEQARPQTYGPDLELIVAVVKKARVETIVEKAAELGARRVRLVLTKRTNADRI 129 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------- 175 +DR+ AAEQ L +P + P L+ LL W+ +++F DET G+ Sbjct: 130 RLDRLDAIAEEAAEQTGRLDVPPVDDPVKLDALLDEWEAGRRLMFCDETGGAPAMRALAP 189 Query: 176 ------------------NSLEKLHAIAHI--------------------PNVAILIGPE 197 E+ A+ P +ILIGPE Sbjct: 190 YSPSPLRGGALARSDDGVGRAEQPDALPGPAHPASAAPSPPSPDGEGEGQPKWSILIGPE 249 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG+ EE E L SLPF T +SLGPRILR+DTAA+AAM L QA GDW Sbjct: 250 GGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 296 >gi|261313181|ref|ZP_05952378.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302207|gb|EEY05704.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 204 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 2/204 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLH 209 P+ +LIGPEGG+ EE++ LH Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLH 203 >gi|254464533|ref|ZP_05077944.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium Y4I] gi|206685441|gb|EDZ45923.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium Y4I] Length = 221 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 2/219 (0%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYI 85 DQ HYL V+R+ G + LFNGKDGEWL++++ GK V + Q++ D+ + Sbjct: 4 DQAHYLFGVMRLAAGAAVALFNGKDGEWLAEVAEAGKRGGTLVCQEQTKPLQLPPDLWLL 63 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+PIK R D++++K+ EMG I PV T +T + DR++ + + AAEQC +P Sbjct: 64 FAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSERIRQDRLQAHAVEAAEQCGGTYVPE 123 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + L LL W Q++F DE N+L+ AILIGPEGG+ E+ Sbjct: 124 VADSQKLSRLLDQWPRERQLMFCDE-AEVGNALQLAAETQKDVPWAILIGPEGGFSEAER 182 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + LH+LP +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 183 KRLHALPQSHVVSLGPRILRADTAAVAAMTLWQQALGDW 221 >gi|77464587|ref|YP_354091.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides 2.4.1] gi|77389005|gb|ABA80190.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 257 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 142/252 (56%), Gaps = 18/252 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL + DQ HYL V+R+ G + LFNG+DGEW ++++ GK Sbjct: 7 RLYVEQPLGPGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+ D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 LCKDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + T LE LL +W + +I++ DE+ G+ L L A Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGL--LEAAGG 184 Query: 187 I-----------PNV---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 P+ AILIGPEGG+ EE+ L + V P+SLGPRILR+DTAAVA Sbjct: 185 FEARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVA 244 Query: 233 AMALVQAICGDW 244 A+ L Q++ GDW Sbjct: 245 ALTLWQSVLGDW 256 >gi|56698449|ref|YP_168823.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria pomeroyi DSS-3] gi|56680186|gb|AAV96852.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 251 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 136/246 (55%), Gaps = 10/246 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ L + S DQ HYL V+R+ GD + LFNG+DGEW +++ GK Sbjct: 6 RLYVEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGEL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 E QS D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 LCESQSAPLRMPPDLWLLFAPIKKARTDFIVEKAAEMGAARIVPVQTEFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKL----- 181 + + + AAEQC +P + L LL W Q++F DET G ++L L Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLGPLLDRWPAERQLMFCDETLAGRSSALSGLLAGQG 185 Query: 182 -HAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +A P+ AILIGPEGG+ E+ L +LP +SLGPRILR+DTAAVAA+ L Q Sbjct: 186 ENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILRADTAAVAALTLWQ 245 Query: 239 AICGDW 244 GDW Sbjct: 246 QALGDW 251 >gi|254293386|ref|YP_003059409.1| 16S ribosomal RNA methyltransferase RsmE [Hirschia baltica ATCC 49814] gi|254041917|gb|ACT58712.1| protein of unknown function DUF558 [Hirschia baltica ATCC 49814] Length = 256 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 146/252 (57%), Gaps = 12/252 (4%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S + RLFV L + + +Q +YL VLR+ + D + +FNG+DGEW + ++ V +S Sbjct: 2 STIPRLFVKADLTLGAPIALTSEQANYLFRVLRLSKNDAVRVFNGRDGEWRASVTEVMRS 61 Query: 65 IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 F +E Q D+Q +F+P+K D++++K+ E+G+ I+PVIT+ TQ + Sbjct: 62 AGFLCLEELIVPQAVIGDLQLLFAPLKKTCTDFVVEKATELGVTMIQPVITKRTQTSTVR 121 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SEN----- 176 + R+ AAEQ + L +P + P L L WD N ++VF DE +EN Sbjct: 122 VSRLEKIVEEAAEQTERLDIPLVQEPIQLLEALGKWDKNRRLVFCDEAGDDPTENWGGDV 181 Query: 177 --SLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + AI+ + + AILIGPEGG+ EE++ L +V P++LGPRILR++TAAV+ Sbjct: 182 GRARPMMEAISELKDGLAAILIGPEGGFSPEERKYLRQQDYVIPVTLGPRILRAETAAVS 241 Query: 233 AMALVQAICGDW 244 A+ L QA GDW Sbjct: 242 ALTLWQAARGDW 253 >gi|163745648|ref|ZP_02153008.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45] gi|161382466|gb|EDQ06875.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45] Length = 219 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 127/220 (57%), Gaps = 6/220 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIRFKVEYQSRSQTKQSDVQY 84 +Q HYL V+R G +LLFNG+DGEWL++++ GK + VE Q+R D+ Sbjct: 4 EQAHYLFGVMRQALGAGVLLFNGRDGEWLAEVTEAGKRGGVLTCVE-QTRPLQMPPDLWL 62 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +F+PIK R D++++K+ EMG I PV+T +T R++ + + AAEQC +P Sbjct: 63 LFAPIKKTRTDFIVEKAAEMGASRIVPVMTEFTNAGRVQQTRLQAHAVEAAEQCGGTYVP 122 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + L LL WD + QI+F DE E+ L A A P AILIGPEGG+ E Sbjct: 123 EVAEAEKLGRLLDRWDTSRQIMFCDEALAGESG--ALPADAQGP-WAILIGPEGGFSEAE 179 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + LH ++LGPRILR+DTAAVAAM + Q GDW Sbjct: 180 RMRLHGFDHAHAVTLGPRILRADTAAVAAMTMWQQALGDW 219 >gi|126463427|ref|YP_001044541.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides ATCC 17029] gi|126105091|gb|ABN77769.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC 17029] Length = 257 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 141/252 (55%), Gaps = 18/252 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL + DQ HYL V+R+ G + LFNG+DGEW ++++ GK Sbjct: 7 RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAETGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+ D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 LCTDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + T LE LL +W + +I++ DE+ G+ L L A Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGL--LEAAGG 184 Query: 187 I-----------PNV---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 P+ AILIGPEGG+ EE+ L + V P+SLGPRILR+DTAAVA Sbjct: 185 FEARGFEEGPKRPSPRPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVA 244 Query: 233 AMALVQAICGDW 244 A+ L Q++ GDW Sbjct: 245 ALTLWQSVLGDW 256 >gi|332559480|ref|ZP_08413802.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides WS8N] gi|332277192|gb|EGJ22507.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides WS8N] Length = 257 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 18/252 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL + DQ HYL V+R+ G + LFNG+DGEW ++++ GK Sbjct: 7 RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 LCTHRTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + T LE LL +W + +I++ DE+ G+ L L A Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGL--LEAAGG 184 Query: 187 I-----------PNV---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 P+ AILIGPEGG+ EE+ L + V P+SLGPRILR+DTAAVA Sbjct: 185 FEARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVA 244 Query: 233 AMALVQAICGDW 244 A+ L Q++ GDW Sbjct: 245 ALTLWQSVLGDW 256 >gi|126740599|ref|ZP_01756286.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6] gi|126718400|gb|EBA15115.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6] Length = 261 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 136/253 (53%), Gaps = 18/253 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL + DQ HYL V+R G ++ LFNG+DGEW ++IS GK Sbjct: 10 RLYVEHPLGVGQSIPLEKDQAHYLFGVMRQALGGHVALFNGRDGEWQAEISEAGKRGGTL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 QS+ D+ IF+PIK R D++++K+ EMG I PV T YT + DR+ Sbjct: 70 TCIEQSKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGAAKILPVGTEYTNSERIRQDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-----------TCGSEN 176 + + + AAEQC +P + L LL +W Q++F DE T G Sbjct: 130 QAHAVEAAEQCGGTYVPEVCDLQKLSRLLDDWPAKRQLMFCDEAEVGQQRFLDLTQGGGT 189 Query: 177 SLEKLHAIAHIPNV-----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 ++ A +P AILIGPEGG+ +E++ LH++ +SLGPRILR+DTAAV Sbjct: 190 GADR-SASEPVPGAVSQPWAILIGPEGGFSDKERKRLHAMEQAHVVSLGPRILRADTAAV 248 Query: 232 AAMALVQAICGDW 244 AAM + Q GDW Sbjct: 249 AAMTVWQQTLGDW 261 >gi|254475767|ref|ZP_05089153.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11] gi|214030010|gb|EEB70845.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11] Length = 242 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 134/239 (56%), Gaps = 6/239 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ PL DQ HYL V+R G + LFNG+DGEW ++I+ GK Sbjct: 6 RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQAVGGQVSLFNGRDGEWRAEIAEAGKRNGLL 65 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V + QSR D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 VCQEQSRPLMLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSDRIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKL-HAIA 185 + + + AAEQC +P + L +L W Q++F DE G+ +L HA A Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLSRVLDQWPQERQLMFCDEAEVGTALTLAAADHAKA 185 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AI+IGPEGG+ E++ LH LP +SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 186 ---PWAIVIGPEGGFSEAERKRLHGLPQSHVVSLGPRILRADTAAVAALTIWQQAYGDW 241 >gi|163738856|ref|ZP_02146269.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis BS107] gi|161387661|gb|EDQ12017.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis BS107] Length = 242 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/238 (40%), Positives = 136/238 (57%), Gaps = 4/238 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL DQ HYL V+R G +LLFNG+DGEW ++++ K S Sbjct: 6 RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + L LL +W Q++F DE GS +L A A Sbjct: 126 QAHAVEAAEQCGGTYVPEVADLQKLSRLLDHWPEERQLMFCDEAEVGSALALASETA-AQ 184 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AI+IGPEGG+ E++ LH+LP +SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 185 AP-WAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241 >gi|163795742|ref|ZP_02189707.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199] gi|159179038|gb|EDP63573.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199] Length = 253 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 140/241 (58%), Gaps = 7/241 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RL+V PL Q HYL VLR+ G+ + LFNG+DGEWL++I +GK Sbjct: 8 RLYVTAPLAEGAVIGLESAQAHYLRSVLRLGPGEAVALFNGRDGEWLARIDGIGKGWASL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V Q+ Q + D+ F+PIK R+D+ QK+ E+G + PV+TR+T N DR+ Sbjct: 68 VVANQTHPQCPEPDLWLAFAPIKRARIDFTAQKATELGASLLWPVMTRHTMVDRVNTDRL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ D LT+P + PT+L+ L+ W + ++ DE+ E L A Sbjct: 128 TANAIEAAEQSDRLTVPEVREPTSLDKLIAEWPEDRALLLCDESGTGLGIAEALAAAG-- 185 Query: 188 PNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P+V +IGPEGG+ EE + L LPFVT + LGPR+LR+DTAA+AA+A+ QA+ GD Sbjct: 186 PSVRRRAGFVIGPEGGFAQEELDRLRKLPFVTAVGLGPRLLRADTAALAALAVWQAVAGD 245 Query: 244 W 244 W Sbjct: 246 W 246 >gi|294675943|ref|YP_003576558.1| hypothetical protein RCAP_rcc00386 [Rhodobacter capsulatus SB 1003] gi|294474763|gb|ADE84151.1| protein of unknown function DUF558, methyltransferase predicted [Rhodobacter capsulatus SB 1003] Length = 241 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL V PL S DQ +YL V+R+ GD + LFNG+DGEW +++ K Sbjct: 7 RLCVTHPLGPGQAVPLSPDQANYLFAVMRLGPGDRVALFNGRDGEWTAEVVEGSKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q D+ +F+PIK R D++++K+ E+G I PV T +T DR+ Sbjct: 67 ACLGLAAPQLNPPDLWLLFAPIKKERTDFIVEKAAELGCAKILPVQTEFTNAARIKQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ +LK+W+ +I++ DE+ + L +A Sbjct: 127 QAHALEAAEQCLGTYVPEVSDLQPLQKVLKSWNPARRILWGDESL--VGPAQTLAGLAPG 184 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AIL+GPEGG+ E+ L +LPFVTP+SLGPRILR+DTAA AA+ L Q+ GDW Sbjct: 185 P-WAILVGPEGGFSETERHQLRALPFVTPVSLGPRILRADTAACAAITLWQSSLGDW 240 >gi|163741896|ref|ZP_02149286.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10] gi|161385069|gb|EDQ09448.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10] Length = 242 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 137/238 (57%), Gaps = 4/238 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL DQ HYL V+R G +LLFNG+DGEW ++++ K S Sbjct: 6 RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + L +L +W Q++F DE GS +L + A+ Sbjct: 126 QAHAVEAAEQCGGTYVPEVVDLQKLSRVLDHWPEERQLMFCDEAEVGSALALARDTAV-Q 184 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AI+IGPEGG+ E++ LH+LP +SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 185 AP-WAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241 >gi|304393152|ref|ZP_07375080.1| surface protein [Ahrensia sp. R2A130] gi|303294159|gb|EFL88531.1| surface protein [Ahrensia sp. R2A130] Length = 255 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 152/245 (62%), Gaps = 5/245 (2%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 +I +R F L + + +++ +VLRM +GD +LLFNG+DGEW + + Sbjct: 13 RIDFTTRRFFTPEALGAGGHIEPGRAEANHVLNVLRMGDGDPLLLFNGRDGEWRATVQRE 72 Query: 62 G-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G K F + Q+R Q + ++ +F+P+K RL+YMIQK+VEMG G ++PV+T YTQ Sbjct: 73 GRKKATFVLGEQTRVQPELPTLRLLFAPLKQARLEYMIQKAVEMGAGHLQPVMTAYTQMR 132 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLE 179 N++R+ T+ + AA+QC +L LP +Y +++ + + ++F DE G+ +L+ Sbjct: 133 KVNIERMETHVVEAAQQCGVLALPQVYDVLSMQDAVADCG---TVIFCDEMEAGTGGALD 189 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + +A+LIGPEGG+ EE+E LH+ V + LGPRILR+DTAAVAA+ALVQA Sbjct: 190 ILRDLTITAPLAVLIGPEGGFSPEEREWLHAQSHVHAIPLGPRILRADTAAVAALALVQA 249 Query: 240 ICGDW 244 GDW Sbjct: 250 ARGDW 254 >gi|83854893|ref|ZP_00948423.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1] gi|83842736|gb|EAP81903.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1] Length = 240 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 130/237 (54%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL Q HYL V+R G ++LLFNG DGEW ++++ GK Sbjct: 6 RLYVDHPLGQGQSVPLDKAQAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAGKRGGVL 65 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V Q++ D+ IF+PIK R D++++K+ EMG I PV + +T DR+ Sbjct: 66 VCAEQTKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGRVQRDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ L+ W+ ++F DE E E+ A A Sbjct: 126 QAHAVEAAEQCGGTFVPEVADMVRLDRLIDRWEPERSLMFCDEALAGE---EEGLASARP 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L L + P++LGPRILR+DTAAVAAM L Q GDW Sbjct: 183 GPWAILIGPEGGFSDSERVRLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTLGDW 239 >gi|84499775|ref|ZP_00998063.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597] gi|84392919|gb|EAQ05130.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597] Length = 241 Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD L + DQ HYL V+RM GD + LFNG+ GEW +++ GK Sbjct: 7 RLYVDHALGEGQTVPLARDQAHYLFGVMRMGVGDAVALFNGRAGEWRAEVVEAGKRAGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + QS Q D+ F+PIK R D++++K+ EMG I PV T +T + +DR+ Sbjct: 67 ECVGQSAPQMDPPDLWLAFAPIKKARTDFIVEKATEMGARRILPVQTDFTNSERVRIDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + P L LL W Q++F DE + + A Sbjct: 127 QAHCVEAAEQCGGTFVPEVAEPVKLGTLLSGWPEGRQLMFCDEALAGGPAALPTRSDAPW 186 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L + P++LGPR+LR+DTAAVAA+ L Q GDW Sbjct: 187 ---AILIGPEGGFSEAERARLRGMDQAHPVALGPRVLRADTAAVAALTLWQDRLGDW 240 >gi|319403717|emb|CBI77302.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 195 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/173 (50%), Positives = 109/173 (63%), Gaps = 1/173 (0%) Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131 Q R Q SD+ Y F+P+K RLDY+IQK+VEMG+ + PVIT +TQ T NM R+ Sbjct: 8 QERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVITHHTQVTRINMARIEANI 67 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 I A+EQC IL+LP P +LE L+NWD + F DE S N + L P + Sbjct: 68 IEASEQCGILSLPKCAPAVSLETFLENWDKAHALFFCDELNESYNPIPLLRKHGTKP-LG 126 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +LIGPEGG+ EE+ L PFV +SLGPRILR+DTAAVAA+ LV A GDW Sbjct: 127 VLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNATMGDW 179 >gi|84515820|ref|ZP_01003181.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53] gi|84510262|gb|EAQ06718.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53] Length = 244 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 14/242 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RL+VD PL + + DQ HYL V+R+ GD + L N +DGEW + + G K Sbjct: 10 RLYVDHPLGVGQSVPLNRDQAHYLFGVMRLGAGDVLSLINSRDGEWDAVVEKAGNKGGVL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDR 126 + Q+R D+ +F+PI+ R ++++K+VE+G I PV T +TQ + D+ Sbjct: 70 ACQAQTRPLQTPPDLWLVFAPIRKERTAFIVEKAVELGAARIIPVQTAFTQAANRIRQDK 129 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++ + + A+EQC +P + L+ LL +W + Q++F DE + A Sbjct: 130 LQAHAVEASEQCGGTFVPPVDDLAKLDRLLADWPKDRQLMFCDEAA--------IGAPVR 181 Query: 187 IPNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +P + AILIGPEGG+ E++ L +LPF +SLGPRILR+DTAAVAA+ L Q G Sbjct: 182 LPAIPGPWAILIGPEGGFSPAERDKLRALPFAHAVSLGPRILRADTAAVAALTLWQQALG 241 Query: 243 DW 244 DW Sbjct: 242 DW 243 >gi|99078057|ref|YP_611315.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria sp. TM1040] gi|99035195|gb|ABF62053.1| protein of unknown function DUF558 [Ruegeria sp. TM1040] Length = 246 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 132/244 (54%), Gaps = 11/244 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD PL DQ HYL V+R+ + LFNG+DGEW ++++ GK Sbjct: 6 RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLSVAARVALFNGRDGEWQAEVAEAGKRGGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 QS+ D+ IF+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 ACLEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATEFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L LL +W Q++F DE +E +A + Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLPSLLDHWPAERQLMFCDE---AEIGQRLFLDVAQV 182 Query: 188 PNV-------AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 AILIGPEGG+ E++ LH++P +SLGPRILR+DTAAVAA+ L Q Sbjct: 183 EGSAGAAGPWAILIGPEGGFSDAERKRLHAMPQAHVVSLGPRILRADTAAVAALTLWQQR 242 Query: 241 CGDW 244 GDW Sbjct: 243 LGDW 246 >gi|319406725|emb|CBI80358.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 194 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/173 (50%), Positives = 108/173 (62%), Gaps = 1/173 (0%) Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131 Q R Q SD+ Y F+P+K RLDY+IQK+VEMG+ + PVIT +TQ T NM R+ Sbjct: 20 QERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVITHHTQVTRINMARIEANI 79 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 I A+EQC IL+LP P LE L+NWD + F DE S N + L P + Sbjct: 80 IEASEQCGILSLPKCAPVVALETFLENWDKTHALFFCDELNESYNPIPLLRKHGTKP-LG 138 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +LIGPEGG+ EE+ L PFV +SLGPRILR+DTAAVAA+ LV A GDW Sbjct: 139 VLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNATMGDW 191 >gi|103487756|ref|YP_617317.1| 16S ribosomal RNA methyltransferase RsmE [Sphingopyxis alaskensis RB2256] gi|98977833|gb|ABF53984.1| protein of unknown function DUF558 [Sphingopyxis alaskensis RB2256] Length = 249 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 6/237 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLF+D PL + G HYL V+R+K GD +LLF+ + GEWL+ ++ K S+ Sbjct: 14 RLFIDQPLGAGSAPVIDGAAAHYLLGVMRLKAGDPVLLFDNRSGEWLAVVADAAKRSVTL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++E R D+ F+P+K RLD++I+K+ E+G+ ++PV+T T +R+ Sbjct: 74 RIERHMRDIEAVPDLWLCFAPVKKARLDWIIEKATELGVRRLQPVMTERTIVERVRRERL 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQC LP + P L LLK W ++FADE G + +A Sbjct: 134 EAQIIEACEQCGRTALPALAEPVKLPQLLKAWPAERALLFADEAGGV-----PMARLAAP 188 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AIL GPEGG+ E+ L + P V L+LGPRILR++TAA+AA +L A GDW Sbjct: 189 APAAILTGPEGGFTDRERALLAAHPAVHRLALGPRILRAETAAIAATSLWMAQHGDW 245 >gi|259415138|ref|ZP_05739060.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259349048|gb|EEW60802.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 246 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 7/242 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD PL DQ HYL V+R+ G + LFNG+DGEW ++++ K S Sbjct: 6 RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLAVGARVALFNGRDGEWQAEVAEASKRSGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 QS+ D+ IF+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 TCVEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATDFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + L LL +W + Q++F DE G L+ + + Sbjct: 126 QAHAVEAAEQCGGTYVPEVADLQKLSALLDHWPEDRQLMFCDEAEVGQRLFLDAVQS-EK 184 Query: 187 IPNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 P AILIGPEGG+ E++ L ++ +SLGPRILR+DTAAVAAM L Q G Sbjct: 185 PPTASGSWAILIGPEGGFSDAERKRLQAMQQAHVVSLGPRILRADTAAVAAMTLWQRALG 244 Query: 243 DW 244 DW Sbjct: 245 DW 246 >gi|114800139|ref|YP_760086.1| 16S ribosomal RNA methyltransferase RsmE [Hyphomonas neptunium ATCC 15444] gi|114740313|gb|ABI78438.1| conserved hypothetical protein TIGR00046 [Hyphomonas neptunium ATCC 15444] Length = 256 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 18/256 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGK 63 + + RLFVD PL +Q +YL VLR+++G ++ LFNG+DGEW + + K Sbjct: 2 ATIPRLFVDAPLAEAGAVALDDEQSNYLLRVLRLEDGASVRLFNGRDGEWTATVHKTSAK 61 Query: 64 SIRFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 Q+R+Q Q + + +F+P+K ++ D +++K+ E+G IRPV+T TQ Sbjct: 62 RAEATPSRQTRTQPGQIGTRLTLLFAPVKKDQTDLILEKATELGAARIRPVLTERTQTRT 121 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---- 177 DR R + AAEQ + L LP I +L+ L + ++F DE G E Sbjct: 122 VRADRFRKIALEAAEQTERLDLPEILDLASLDAALDALEPGTAVIFCDE-AGDEAEAPWG 180 Query: 178 ---------LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 LE L + + AIL GPEGG+ E+ L P+SLGPRILR++T Sbjct: 181 GQAGRARPMLEVLEELKGR-SAAILTGPEGGFTPAERAFLRGRAETWPVSLGPRILRAET 239 Query: 229 AAVAAMALVQAICGDW 244 AA++AM L QA+CGDW Sbjct: 240 AAISAMTLWQAVCGDW 255 >gi|254510112|ref|ZP_05122179.1| surface protein [Rhodobacteraceae bacterium KLH11] gi|221533823|gb|EEE36811.1| surface protein [Rhodobacteraceae bacterium KLH11] Length = 229 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 DQ HYL V+R+ G + LFNG+DGEWLS+++ GK Q++ D+ + Sbjct: 12 DQAHYLFGVMRLSVGARVALFNGQDGEWLSEVAEAGKRGGVLGCIAQTKPLQLPPDLWLL 71 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+PIK R D++++K+ EMG I PV T +T + DR++ + + AAEQC +P Sbjct: 72 FAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRLQAHAVEAAEQCGGTFVPE 131 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + L+ +L W Q++F DE GS L K AILIGPEGG+ +E Sbjct: 132 VAELQRLDRVLDAWPETRQLMFCDEAEVGSALRLAKQE---QNQPWAILIGPEGGFSDKE 188 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ L +LP+ +SLGPRILR+DTA VAAM + Q GDW Sbjct: 189 RKRLAALPYSHTVSLGPRILRADTAVVAAMTMWQQALGDW 228 >gi|85703484|ref|ZP_01034588.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217] gi|85672412|gb|EAQ27269.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217] Length = 243 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 4/238 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67 RL+++ PL S Q HYL V+R GD +L+FNG+ GEW +++ GK Sbjct: 7 RLYLEHPLGEGQTIPLSQPQAHYLFGVMRQGVGDAVLVFNGEAGEWRAEVIEAGKRGGIL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 67 QIAEQTAPQRDPPDLWLMFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + L+ +L +W Q++F DE G L + + Sbjct: 127 QAHAVEAAEQCGGTYVPEVSDLHRLDRMLADWPEARQVMFCDEALAGCAEGLGR--DLPR 184 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L +LP +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 185 GAPWAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQNSLGDW 242 >gi|89056403|ref|YP_511854.1| 16S ribosomal RNA methyltransferase RsmE [Jannaschia sp. CCS1] gi|88865952|gb|ABD56829.1| protein of unknown function DUF558 [Jannaschia sp. CCS1] Length = 245 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 134/237 (56%), Gaps = 1/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL S D +YL +V+R+ G + LFNG DGEW ++++ GK Sbjct: 8 RLFVDHPLGEAQSVPVSRDHANYLFNVMRLDAGAGVALFNGTDGEWRAEVAAKGKRGGVL 67 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V + Q+ Q D+ +F+PIK R D++++K+ E+G+ + PV T T D++ Sbjct: 68 VCKEQTAPQVMPPDMWLLFAPIKKARTDFIVEKAAELGVARVCPVRTERTNAERIRQDKL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + +LE +L WD +VFADE +S A Sbjct: 128 QAHAMEAAEQCGGTYVPPVEDIRSLEKVLDGWDDRRALVFADEAEAGRSSSLAAVLAAAP 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E+ L ++P V LSLGPRILR+DTAAVAA+ L Q GDW Sbjct: 188 PPAAILIGPEGGFSDAERARLRAMPNVHVLSLGPRILRADTAAVAALTLWQEHVGDW 244 >gi|149202038|ref|ZP_01879011.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035] gi|149144136|gb|EDM32167.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035] Length = 243 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 129/237 (54%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL + Q HYL V+R GD +LLF+G+ GEW + + GK Sbjct: 7 RLYVEHPLGEGQTIPLTQPQAHYLFGVMRQGVGDAVLLFDGRHGEWRADVIEAGKRGGVL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T DR+ Sbjct: 67 QVAEQTAPQRDPPDLWLLFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNAERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ +L +W + Q++F DE + Sbjct: 127 QAHAVEAAEQCGGTFVPEVGDLHRLDRMLADWPKDRQLMFCDEGLAGHAATLAGDLPRGA 186 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E+ L +LP +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 187 P-WAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQRALGDW 242 >gi|255264688|ref|ZP_05344030.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255107023|gb|EET49697.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 239 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 132/237 (55%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD L + +Q HYL V+R + + LFNG+DGEW +++ GK Sbjct: 6 RLYVDHDLGAGQSVLLTKEQAHYLFGVMRKGVDEVLSLFNGRDGEWDARVVEAGKRKGIL 65 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V E QS+ DV +F+PIK R D++++K+ EMG I PV T +T + +++ Sbjct: 66 VCEAQSKPLQLPPDVWLMFAPIKKARTDFIVEKATEMGAARIMPVQTEFTNSDRVRHEKL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + AAEQC +P + P L +L W + +++F DE ++ A A Sbjct: 126 VAHAVEAAEQCGGTYVPPVDPLAKLTKVLAAWPEDRKLLFCDEALVGAQAV---FAEASH 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+E L + P+VT SLGPRILR+DTAAVAA+ L Q GDW Sbjct: 183 DKWAILIGPEGGFSQAERELLGAKPYVTQASLGPRILRADTAAVAALTLWQTTQGDW 239 >gi|94496115|ref|ZP_01302693.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58] gi|94424294|gb|EAT09317.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58] Length = 248 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 135/239 (56%), Gaps = 8/239 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL V+ L G+ HYL V+R+K D +LLF+G+ GEW ++ + K + Sbjct: 14 RLHVETQLGDGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAARARDIRKRDLVL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R+ + D +PI+ R+D + +K+ E+G+ ++PV+TR N+DR+ Sbjct: 74 ECVAQTRAPEQVPDYWLCCAPIRKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNLDRL 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAIA 185 + + AAEQC LP + L+ LL NWD + FADE+ G+ E +L A Sbjct: 134 HAHLVEAAEQCGRTALPDLGSLMKLDALLGNWDSRRHLFFADESGGAPLEQTLR-----A 188 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 H A L+GPEGG+ +E++ + ++P +SLGPRILR++TAA+AA + AI GDW Sbjct: 189 HPGPAAFLVGPEGGFDPQERDAIQAMPGAVAVSLGPRILRAETAAIAATSAWMAINGDW 247 >gi|83941416|ref|ZP_00953878.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36] gi|83847236|gb|EAP85111.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36] Length = 220 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 122/218 (55%), Gaps = 4/218 (1%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86 Q HYL V+R G ++LLFNG DGEW ++++ GK Q++ D+ IF Sbjct: 5 QAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAGKRGGVLACAEQTKPLHMPPDLWLIF 64 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +PIK R D++++K+ EMG I PV + +T DR++ + + AAEQC +P + Sbjct: 65 APIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGRVQRDRLQAHAVEAAEQCGGTFVPEV 124 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 L+ L+ W+ ++F DE E E+ A A AILIGPEGG+ E+ Sbjct: 125 ADMVRLDRLIDRWEPERSLMFCDEALAGE---EEGLASARPGPWAILIGPEGGFSDSERA 181 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 L L + P++LGPRILR+DTAAVAAM L Q GDW Sbjct: 182 RLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTLGDW 219 >gi|126734662|ref|ZP_01750408.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2] gi|126715217|gb|EBA12082.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2] Length = 244 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 137/247 (55%), Gaps = 8/247 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 +++ + RL+VD L S +Q HYL V+R+ EG + L NG+DG W + + Sbjct: 2 VRLMASKVRLYVDHALGQGQSVPLSREQAHYLFGVMRLAEGAVLSLINGRDGAWDADVVK 61 Query: 61 VGKSIR-FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK + Q+ DV +F+PI+ R ++++K+VEMG+ + PV T +TQ+ Sbjct: 62 AGKKGGILECSAQTGPLQMPPDVWLLFAPIRKERTAFIVEKAVEMGVSRVCPVQTDFTQS 121 Query: 120 TH-YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENS 177 + D+++T+ I AAEQC +P + L+ LL W + Q++F DE G Sbjct: 122 ANRVRQDKLQTHAIEAAEQCGGTFVPPVDDLAKLDRLLAAWPEDRQLMFCDEVLIGDRVG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + AILIGPEGG+ E++ L LPF P+SLGPRILR+DTAAVAA+ + Sbjct: 182 LPLVEG-----PWAILIGPEGGFSPAERDRLRGLPFAHPVSLGPRILRADTAAVAALTVW 236 Query: 238 QAICGDW 244 Q GDW Sbjct: 237 QQALGDW 243 >gi|329851437|ref|ZP_08266194.1| RNA methyltransferase, RsmE family protein [Asticcacaulis biprosthecum C19] gi|328840283|gb|EGF89855.1| RNA methyltransferase, RsmE family protein [Asticcacaulis biprosthecum C19] Length = 248 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 DQ YLA V+R+ D + +FNG+DGEW +++S VGK +++ + Q+R Q Sbjct: 24 DQSRYLAAVMRLSVDDTVSIFNGRDGEWGARLSEVGKKAVKLDLIEQTRPQPTGQGPILA 83 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 + IK + L+Y+++K+ E+G G I+ + TR T +H N++R+ + +AEQ + L +P Sbjct: 84 VALIKRSALEYIVEKATELGAGTIQLLTTRRTNASHTNVERLVSIAKESAEQTERLDVPE 143 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENS------LEKLHAIAHIPNVAILIGPEGG 199 I P L+ L + +++F DE E + L+ L A + ILIGPEGG Sbjct: 144 ILAPVKLDRFLAAAAFD-RLIFGDENSTHEGTRETLPLLQALKTTAAVERSVILIGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +E+ L P P++LGPRILR+DTAA++A+ L QA+ GDW Sbjct: 203 FDDDERLALRGRPDCIPVNLGPRILRADTAAISALTLYQAVVGDW 247 >gi|148555278|ref|YP_001262860.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas wittichii RW1] gi|148500468|gb|ABQ68722.1| protein of unknown function DUF558 [Sphingomonas wittichii RW1] Length = 210 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 128/211 (60%), Gaps = 6/211 (2%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 ++R+K GD I LF+ GEW + I VGK ++ +VE + R + D+ + +PIK R Sbjct: 1 MMRLKAGDAIALFDDMSGEWRAVIEQVGKRAVAVRVEQRMREREAVPDLWLVAAPIKKGR 60 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 +D++ +K+ E+G+ RPVITR T N+DR+R + I AAEQC+ LP + P L Sbjct: 61 IDWVAEKACELGVARWRPVITRRTIVDRLNLDRLRAHMIEAAEQCERTALPILDEPVKLS 120 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 +L++W + ++FADE E + A+ P AILIGPEGG+ EE+ + ++P Sbjct: 121 AMLRDWPADRALIFADE----EGGMPMAEAVKPGP-AAILIGPEGGFTDEERAAILAVPQ 175 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +SLGPRILR+DTA AA+AL + GDW Sbjct: 176 AVGVSLGPRILRADTAMAAAVALWMGLAGDW 206 >gi|332187403|ref|ZP_08389141.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17] gi|332012564|gb|EGI54631.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17] Length = 247 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 138/241 (57%), Gaps = 13/241 (5%) Query: 9 RLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 RLFVD L I+ G A+ HYL V+R K GD + LF+ + GEWL + VGK Sbjct: 14 RLFVDQILAEGPIRIDGPAA----HYLVSVMRTKVGDPVKLFDDRTGEWLGVAASVGKRD 69 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + V + R + D+ +P+K R+D++ +K+ E+G+ + PV+TR T N Sbjct: 70 LTLDVTQRLREREAVPDLWLCAAPLKKGRVDWLAEKACELGVARLVPVVTRRTVVDKPNT 129 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R+R + I AAEQC LP + P L LL++W + FADE G L L A+ Sbjct: 130 ERLRAHMIEAAEQCGRTALPQVAEPVKLPALLRDWPEERALFFADENGG----LPALEAM 185 Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 AH AILIGPEGG+ SEE+E + +LP + LGPRILR+DTAA AA++L A GD Sbjct: 186 RAHQGPAAILIGPEGGFDSEEREAIRALPSAIGIGLGPRILRADTAAAAAVSLWMAAAGD 245 Query: 244 W 244 W Sbjct: 246 W 246 >gi|114771337|ref|ZP_01448757.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255] gi|114548262|gb|EAU51149.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255] Length = 243 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 144/245 (58%), Gaps = 4/245 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I S + RLFVD PL + DQ +YL +V+R+ GD I +FNGKDGEW +++ Sbjct: 1 MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59 Query: 61 VGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K V+ QS Q DV +F+PIK R D++++K+ EMG+ I PV T YT + Sbjct: 60 ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKTRTDFIVEKATEMGVSRICPVFTDYTNS 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R++ ++I AAEQC +P + +TL +LK+W ++F DE EN ++ Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGEN-VK 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A AILIGPEGG+ E L SL FVT +SLGPRILR+DTAAVAA+A+ Q Sbjct: 179 SMKATKS-DKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILRADTAAVAALAIWQM 237 Query: 240 ICGDW 244 GDW Sbjct: 238 QMGDW 242 >gi|87134653|gb|ABD25395.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 258 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 6/239 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV+ PL + G Q HYL V+R+ GD ++L + GEW+S+++ VGK + Sbjct: 23 RLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLVL 82 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++E ++R + + D + +K D +++K+ E+G + PV+TR N +R Sbjct: 83 EIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPERA 142 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-H 186 RT + AAEQC LP + L+ LL++W + FADE G + A + H Sbjct: 143 RTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGG----IPAAAAFSLH 198 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 A+L+GPEGG+ E+ + + P ++LGPRILR +TA++A M L + GDW+ Sbjct: 199 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 257 >gi|229324846|ref|YP_496229.2| hypothetical protein Saro_0950 [Novosphingobium aromaticivorans DSM 12444] Length = 249 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 6/239 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV+ PL + G Q HYL V+R+ GD ++L + GEW+S+++ VGK + Sbjct: 14 RLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLVL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++E ++R + + D + +K D +++K+ E+G + PV+TR N +R Sbjct: 74 EIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPERA 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-H 186 RT + AAEQC LP + L+ LL++W + FADE G + A + H Sbjct: 134 RTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGG----IPAAAAFSLH 189 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 A+L+GPEGG+ E+ + + P ++LGPRILR +TA++A M L + GDW+ Sbjct: 190 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 248 >gi|307296237|ref|ZP_07576064.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum L-1] gi|306878039|gb|EFN09262.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum L-1] Length = 248 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 G+ HYL V+R+K D +LLF+G+ GEW +K + K + +V Q+++ D Sbjct: 30 DGNPAHYLISVMRVKPDDIVLLFDGRSGEWAAKARDIRKRDLVLEVVSQTKAPENVPDFW 89 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +PIK R+D + +K+ E+G+ ++PV+TR N DR+ + + AAEQC L Sbjct: 90 LCCAPIKKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNFDRLHAHLVEAAEQCGRTAL 149 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + L+ L+++W + + FADET G E + L AH A LIGPEGG+ Sbjct: 150 PDLSEMVKLDALIRDWPDDRWLFFADET-GGEPLADTLK--AHPGPAAFLIGPEGGFDPA 206 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E+E + + P+SLGPRILR++TAA+AA + I GDW Sbjct: 207 EREAIRGVAKAVPVSLGPRILRAETAAIAATSAWMTINGDW 247 >gi|297184217|gb|ADI20335.1| uncharacterized protein conserved in bacteria [uncultured alpha proteobacterium EB080_L27A02] Length = 243 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 144/245 (58%), Gaps = 4/245 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I S + RLFVD PL + DQ +YL +V+R+ GD I +FNGKDGEW +++ Sbjct: 1 MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59 Query: 61 VGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K V+ QS Q DV +F+PIK R D++++K+ EMG+ I PV T YT + Sbjct: 60 ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKARTDFIVEKATEMGVSRICPVFTDYTNS 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R++ ++I AAEQC +P + +TL +LK+W ++F DE EN ++ Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGEN-VK 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A AILIGPEGG+ E L SL FVT +SLGPRILR+DTAAVAA+A+ Q Sbjct: 179 SMKATKS-DKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILRADTAAVAALAIWQM 237 Query: 240 ICGDW 244 GDW Sbjct: 238 QMGDW 242 >gi|296284223|ref|ZP_06862221.1| 16S ribosomal RNA methyltransferase RsmE [Citromicrobium bathyomarinum JL354] Length = 255 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 129/239 (53%), Gaps = 8/239 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFV+ L G++ HYL V+R+ EGD ++L + GEW +++ V K R Sbjct: 14 RLFVEDELGEGRTIALYGNRAHYLGKVMRVSEGDTVILCDDLTGEWAARVGQVDKR-RVD 72 Query: 69 VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V R + +++ P +K +R D +++K+ E+G+ AIRPV+TR N +R Sbjct: 73 VTVVERLREREAVPDLWLCPALLKKDRFDLVLEKATELGVAAIRPVVTRRCVADKLNPER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA- 185 T AAEQC LP + P L+ LL +W + FADE G + + A A Sbjct: 133 AATIVTEAAEQCARTALPQVAGPVKLDALLADWPAERALFFADEEGGEDAA----SAFAR 188 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 H AIL GPEGG+ E+ + +LP P++LGPRILR +TA +AA+++ A GDW Sbjct: 189 HGAPAAILTGPEGGFDDAERAAIRALPQAIPITLGPRILRGETATIAAISIWMAQAGDW 247 >gi|83591910|ref|YP_425662.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum rubrum ATCC 11170] gi|83574824|gb|ABC21375.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 247 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD PL + G Q HYL V+R+ G + LFNG+DGEWL+ + +GK+ Sbjct: 9 RLYVDAPLAAGLDVRLDGAQAHYLRDVMRLGPGAAVALFNGRDGEWLATLDTLGKAGAQA 68 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V + R Q + +F+P+K DY+++K+VE+G GA+ PV+TR TQ+ DR+ Sbjct: 69 VAQTLLRPQGDEDGPWLLFAPLKKEATDYLVEKAVELGCGALLPVMTRRTQSQKVRTDRL 128 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC+ LTLP ++ P L +L++W ++ E + + + Sbjct: 129 RAQVIGAAEQCERLTLPAVFEPRPLAKVLEDWPAERRLFVLAERRDALPAARAFAGARAL 188 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A+L+GPEGG ++ + L +LP TP+ LGPRILR++TAA AA+A+ QA+ GDW Sbjct: 189 -KAALLVGPEGGLDDKDLDALLALPSSTPVGLGPRILRAETAAAAALAVWQAVAGDW 244 >gi|254486640|ref|ZP_05099845.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101] gi|214043509|gb|EEB84147.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101] Length = 240 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 129/241 (53%), Gaps = 12/241 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ L Q HYL V+R G +LLFNGKDGEW +++ GK R Sbjct: 6 RLYVEHGLGQGQSVPLDKAQAHYLFGVMRQAVGAAVLLFNGKDGEWRAEVVEAGK--RGG 63 Query: 69 VEYQSRSQTKQ----SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 V Q +QTK D+ IF+PIK R D++++K+ EMG I PV T +T Sbjct: 64 V-LQCVAQTKPLQMPPDLWLIFAPIKKTRTDFIVEKAAEMGARRIVPVQTDFTNAGRVQR 122 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHA 183 DR++ + + AAEQC + + L+ L+ WD ++F DE GS+ L + Sbjct: 123 DRLQAHAVEAAEQCGATFVAEVTEMVKLDRLIDQWDAGRSLMFCDEALAGSDAVLGQSGR 182 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A ILIGPEGG+ E+ L L + ++LGPRILR+DTAAVAAM + Q GD Sbjct: 183 GAW----GILIGPEGGFSDRERSRLRGLEYARSVTLGPRILRADTAAVAAMTVWQQAFGD 238 Query: 244 W 244 W Sbjct: 239 W 239 >gi|315499603|ref|YP_004088406.1| hypothetical protein Astex_2610 [Asticcacaulis excentricus CB 48] gi|315417615|gb|ADU14255.1| protein of unknown function DUF558 [Asticcacaulis excentricus CB 48] Length = 248 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 12/227 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDV-QY 84 DQ Y+A V+R+ +GD I +FNG+DGEW ++ V K + ++ Q+R Q + + Sbjct: 24 DQARYVAAVMRLGDGDEISVFNGRDGEWRGRLQAVSKKHVHVELIAQARPQPAAGNAPKL 83 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 + + +K RL+ +I+K+ E+G+G I+ +ITR T H N+ R++ AAEQ + L +P Sbjct: 84 LIALVKRGRLETIIEKATELGVGEIQLLITRRTNADHTNLARLQLIAQEAAEQTERLDVP 143 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-------LEKLHAIAHIPNVAILIGPE 197 + P LE LK +++ DE E LE L + V+ILIGPE Sbjct: 144 QVLAPVKLEVYLKAASET--LIYGDEDSTHETGERTISPMLEALSGLGE-GAVSILIGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG+ + E++TL P ++LGPRILR+DTAA++A+ L QA+ GDW Sbjct: 201 GGFDAVERQTLSVQPNTVAVNLGPRILRADTAAISALTLYQAVRGDW 247 >gi|114763454|ref|ZP_01442861.1| hypothetical protein 1100011001336_R2601_17754 [Pelagibaca bermudensis HTCC2601] gi|114543992|gb|EAU47003.1| hypothetical protein R2601_17754 [Roseovarius sp. HTCC2601] Length = 208 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 4/210 (1%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRL 94 +RM G ILLFNG DGEW ++I+ GK V + Q+R+Q D+ +F+PIK R Sbjct: 1 MRMATGGEILLFNGHDGEWRAEITEAGKKAGTAVCDTQTRAQAMPPDLWLLFAPIKKART 60 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 D++++K+VE+G+ I PV T++T + DR++ + + AAEQC L +P + L+ Sbjct: 61 DFIVEKAVELGVRRILPVQTQFTNSERIRQDRLQAHALEAAEQCGALFVPEVAELVRLDR 120 Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 LL +W ++F DE +E + A+LIGPEGG+ E+ L + Sbjct: 121 LLADWPDERGLLFCDE---AEAGSRAGALASAPAPSAVLIGPEGGFSDAERTRLGRMEQT 177 Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++LGPRILR+DTAAVAA+ L Q+ GDW Sbjct: 178 RVIALGPRILRADTAAVAALTLWQSQSGDW 207 >gi|154251112|ref|YP_001411936.1| hypothetical protein Plav_0656 [Parvibaculum lavamentivorans DS-1] gi|154155062|gb|ABS62279.1| protein of unknown function DUF558 [Parvibaculum lavamentivorans DS-1] Length = 264 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 144/251 (57%), Gaps = 8/251 (3%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + S RL+++ PL + DQ HYL +VLRM EG +LLFNG+DGEW ++I+ Sbjct: 14 RCASGKARLYIEEPLNAGARLTLERDQSHYLVNVLRMGEGAAVLLFNGRDGEWAARIAEA 73 Query: 62 -GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 K+ ++ Q+R Q D+ +F+P+K RLD++ QK+ EMG I+PVIT T T Sbjct: 74 HKKNCVLELTAQTRVQEPLPDIWLLFAPVKKARLDFIAQKATEMGAAVIQPVITERTVVT 133 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENS 177 +R++ + AAEQC ++ +P + L LL W+ +I+F DE+ + Sbjct: 134 RLKDERLQANAVEAAEQCGLVAVPEVREAEKLGSLLARWEEAAPGRRILFCDESEEPGAA 193 Query: 178 LEKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E L +A +AILIGPEGG+ +E++ L LSLGPRI+R+DTAA+AA Sbjct: 194 REALARLAEEGWRGAPLAILIGPEGGFSPKERDMLRGRKDTAVLSLGPRIMRADTAAIAA 253 Query: 234 MALVQAICGDW 244 +A+V GDW Sbjct: 254 LAVVGLALGDW 264 >gi|159045639|ref|YP_001534433.1| 16S ribosomal RNA methyltransferase RsmE [Dinoroseobacter shibae DFL 12] gi|157913399|gb|ABV94832.1| protein of unknown function DUF558 [Dinoroseobacter shibae DFL 12] Length = 249 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 4/239 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL SG Q HYL V+R G+ + LFNG G W +++ GK Sbjct: 11 RLYVEHPLGQGQTVPLSGAQAHYLFGVMRRGVGEVVTLFNGHAGAWAARVVEAGKRGGVL 70 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +VE Q+ Q D+ F+PIK R D++++K+ EMG I PV T +T DR+ Sbjct: 71 EVETQTAPQRDPPDLWLCFAPIKKARTDFIVEKAAEMGARRIVPVQTAFTNAERIRRDRL 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ LL +W + ++F DE E + A + Sbjct: 131 QAHAVEAAEQCGGTFVPEVADLVGLDRLLSDWPSDRSLMFCDEALAEEGAAAAADTPA-L 189 Query: 188 PN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ AILIGPEGG+ E+ L ++P + LGPRILR+DTAAVAA+ L Q GDW Sbjct: 190 PDGPWAILIGPEGGFSEPERARLRAMPQAQSVRLGPRILRADTAAVAALTLWQIRYGDW 248 >gi|254437857|ref|ZP_05051351.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 307] gi|198253303|gb|EDY77617.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 307] Length = 234 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 135/237 (56%), Gaps = 6/237 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 ++VD PL + + S +Q HYL V+R+ G ++ LFNG+DGEW + ++ K S Sbjct: 1 MYVDHPLGPQERVALSREQAHYLFGVMRLDVGADVSLFNGRDGEWRALVAAASKKSGVLD 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRV 127 Q++ D+ +F+PIK +R ++++K+ E+G I P+ T YTQ+ + DR+ Sbjct: 61 CVVQTKPLQMPPDLWLVFAPIKKDRTSFIVEKAAELGAARIVPLQTEYTQSANRVRQDRL 120 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + +L W+ +I+F DE + + +A Sbjct: 121 QAHALEAAEQCGGTYVPEVAELQKFAKMLDTWNPTRRILFCDEAMVDKPLILPTNAGPW- 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ +E++ L+S+ +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 180 ---AILIGPEGGFSDKERDRLNSMLCAHAISLGPRILRADTAAVAAMTLWQQAMGDW 233 >gi|294010080|ref|YP_003543540.1| hypothetical protein SJA_C1-00940 [Sphingobium japonicum UT26S] gi|292673410|dbj|BAI94928.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 253 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 130/237 (54%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL V+ L G+ HYL V+R+K D +LLF+G+ GEW +K + K + Sbjct: 19 RLHVETQLGEGVSVPVDGNPAHYLISVMRVKADDIVLLFDGRSGEWAAKARDIRKRDLVL 78 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V ++R D +PI+ R+D + +K+ E+G+ ++PV+TR N+DR+ Sbjct: 79 EVVSRTRPPEDVPDFWLCCAPIRKGRIDLVAEKACELGVARLQPVLTRRAVVDKLNLDRL 138 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + AAEQC LP + L+ LL++W + FADE+ G E + L AH Sbjct: 139 YAHLVEAAEQCGRTALPELGQMAKLDALLRDWPEGRWLFFADES-GGEPLADTLK--AHP 195 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A LIGPEGG+ E+E + + P+SLGPRILR++TAA+AA + I GDW Sbjct: 196 GPAAFLIGPEGGFDPAEREAIRRVAKAIPVSLGPRILRAETAAIAATSAWMTINGDW 252 >gi|86139068|ref|ZP_01057639.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193] gi|85824299|gb|EAQ44503.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193] Length = 259 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 30/248 (12%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 +Q HYL V+R + G + LFNG DGEW ++++ GK QS++ D+ I Sbjct: 12 EQAHYLFGVMRQRLGGAVALFNGFDGEWQAEVTEAGKRGGTLTCVAQSKTLQMPPDLWLI 71 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+PIK R D++++K+ EMG I PV T YT + DR++ + + AAEQC +P Sbjct: 72 FAPIKKARTDFIVEKAAEMGAARILPVGTDYTNSERIRQDRLQAHAVEAAEQCGGTYVPE 131 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADET-----------------------------CGSEN 176 + L LL +W Q++F DE G++ Sbjct: 132 VCDLQKLSQLLDHWPDERQLMFCDEAEVGQRRFLEVARGSAGPEGGREAPALGGGTGADR 191 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S + + AILIGPEGG+ +E++ LH++ +SLGPRILR+DTAAVAAM L Sbjct: 192 SASEPFGKLSLQPWAILIGPEGGFSDKERKRLHAMAQAHVVSLGPRILRADTAAVAAMTL 251 Query: 237 VQAICGDW 244 Q GDW Sbjct: 252 WQQTLGDW 259 >gi|85708013|ref|ZP_01039079.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1] gi|85689547|gb|EAQ29550.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1] Length = 253 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RLFV+ L G+Q HYL V+R+ GD ++L + GEW +++ V K + Sbjct: 14 RLFVEDELGDGRIFALEGNQAHYLGKVMRVSPGDTVILCDNITGEWAARVGQVEKRRVDL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V R + + D+ + +K +R D++++K+ E+G I+P+ITR NM+R Sbjct: 74 TVTDHLRPRGEVPDLWLCPALLKKDRFDFVLEKATELGSARIQPMITRRCVADKLNMERA 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R AAEQC LP I P L+ LL +W I FADE G E++ + H Sbjct: 134 RIIATEAAEQCARTALPDIAEPVKLDALLADWPSERAIFFADEE-GGEHAADAF--CFHE 190 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ + + P +SLGPRILR +TAA+AA+++ A GDW Sbjct: 191 GPAAILIGPEGGFDDAERAAIRAHPQARAISLGPRILRGETAAIAALSVWMAEAGDW 247 >gi|326386680|ref|ZP_08208302.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium nitrogenifigens DSM 19370] gi|326208995|gb|EGD59790.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium nitrogenifigens DSM 19370] Length = 255 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFV PL G Q HYL V+R+ GD ++L + GEW ++ VGK + Sbjct: 18 RLFVTGPLGDGVSVTIEGGQAHYLVRVMRIAPGDVVVLCDDATGEWATQAGPVGKRDLVL 77 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + R + D + +K +R D +++K+ E+G+ +RP++ R N +R Sbjct: 78 TCTTRLREREDVPDFWLCPALLKKDRFDLVLEKASELGVARLRPMLARRCVADKLNPERA 137 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC LP P +E LL +W + + FADE G+ + AH Sbjct: 138 RATLIEAAEQCARTALPQCDAPVRIEALLADWPQDRTLFFADENGGAPAAA---SFAAHP 194 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +L+GPEGG+ E+ + + P P++LGPRILR +TAA+AA +L +CGDW Sbjct: 195 GPAGLLVGPEGGFDEAERAAIRAHPAAVPITLGPRILRGETAAIAATSLWMGLCGDW 251 >gi|126730424|ref|ZP_01746235.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37] gi|126709157|gb|EBA08212.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37] Length = 247 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 138/237 (58%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL VD PL + S DQ HYL V+R++ G + LFNG+DGEW ++++ GK Sbjct: 13 RLCVDQPLAEEQAVALSRDQAHYLFGVMRLERGARVALFNGRDGEWAAEVADAGKRGGTL 72 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V + +Q D+ +F+P+K R D++++K+VEMG+ I PV T +T + +D+ Sbjct: 73 VCRDRQAAQGTPPDLWLLFAPVKKARTDFIVEKAVEMGVRRILPVQTDFTNSERLRVDKQ 132 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + LE LL WD QI+F DET ++ L + Sbjct: 133 QAHAVEAAEQCGATFVPEVAEMARLERLLSEWDTTRQILFCDETAAGAPTI--LGGLEPG 190 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P A+LIGPEGG+ E+ L + +SLGPRILR++TAAVAA+AL QA GDW Sbjct: 191 P-WAVLIGPEGGFSDRERARLAEMDCARAVSLGPRILRAETAAVAALALWQAHLGDW 246 >gi|221640498|ref|YP_002526760.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides KD131] gi|221161279|gb|ACM02259.1| Hypothetical Protein RSKD131_2399 [Rhodobacter sphaeroides KD131] Length = 224 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 18/225 (8%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 +R+ G + LFNG+DGEW ++++ GK Q+ D+ +F+PIK R Sbjct: 1 MRLARGAAVSLFNGRDGEWRAEVAETGKRGGTLLCTDQTAPLRLPPDLWLLFAPIKKART 60 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 D++++K+ EMG I PV TR+T + DR++ + + AAEQC +P + +LE Sbjct: 61 DFIVEKAAEMGAARILPVQTRFTNSERIRQDRLQAHAVEAAEQCGGTFVPEVADLASLER 120 Query: 155 LLKNWDHNCQIVFADET-CGSENSLEKLHAIAHI-----------PNV---AILIGPEGG 199 LL +W +I++ DE+ G+ L L A P+ AILIGPEGG Sbjct: 121 LLADWPAERRIMWCDESLVGARAGL--LEAAGGFEARGFEEGPKRPSPGPWAILIGPEGG 178 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + EE+ L + V P+SLGPRILR+DTAAVAA+ L Q++ GDW Sbjct: 179 FSEEEQARLRRMEQVVPVSLGPRILRADTAAVAALTLWQSVLGDW 223 >gi|228879506|ref|YP_457473.2| 16S ribosomal RNA methyltransferase RsmE [Erythrobacter litoralis HTCC2594] Length = 276 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 27/262 (10%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFV P+ T G+ HYL V+R+ GD ++L + GEW K++ V K I Sbjct: 14 RLFVPEPIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRI-VT 72 Query: 69 VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +E + + ++ + P +K +R D +++K+ E+G+ AIRPV+TR N +R Sbjct: 73 LEPVEKLREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---------ENS 177 R AAEQC LP + P L+ LL++W + + FADE G+ S Sbjct: 133 ARAIVTEAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSES 192 Query: 178 LEKLHAIA----HIPN-----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 L + A H+ + A+LIGPEGG+ E++ + + P ++LGPR Sbjct: 193 LRRQGPQAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPR 252 Query: 223 ILRSDTAAVAAMALVQAICGDW 244 ILR +TAA+AA AL GDW Sbjct: 253 ILRGETAAIAATALWMGTVGDW 274 >gi|149186955|ref|ZP_01865263.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21] gi|148829344|gb|EDL47787.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21] Length = 239 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RLFV L G+Q +YLA V+R+ +GD ++L + GEW+++++ GK + Sbjct: 14 RLFVSDELGTGRIVCIEGNQANYLARVMRVGKGDAVILCDDVTGEWIARVTEAGKRRVEL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 KVE R + + D + +K +R D +++KS E+G+ AI PVITR N +R Sbjct: 74 KVEDHLRPREEVPDFWLCPALLKKDRFDVVLEKSTELGVAAIHPVITRRCVADKLNGERA 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 T AAEQC LP + P L+ LL++W + + FADE G + +A Sbjct: 134 STIVTEAAEQCARTALPQVAEPVKLDALLRDWPEDRILFFADEEGGEPAADAFCYADGP- 192 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A+L GPEGG+ E+ + + P P+SLGPRILR +TAA+A +A+ Sbjct: 193 --AALLTGPEGGFDDAERAAIRAHPAARPISLGPRILRGETAALAGIAV 239 >gi|84786494|gb|ABC62676.1| hypothetical protein ELI_02920 [Erythrobacter litoralis HTCC2594] Length = 260 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 27/256 (10%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 P+ T G+ HYL V+R+ GD ++L + GEW K++ V K I +E + Sbjct: 4 PIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRI-VTLEPVEK 62 Query: 75 SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI 132 + ++ + P +K +R D +++K+ E+G+ AIRPV+TR N +R R Sbjct: 63 LREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAERARAIVT 122 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---------ENSLEKLHA 183 AAEQC LP + P L+ LL++W + + FADE G+ SL + Sbjct: 123 EAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSESLRRQGP 182 Query: 184 IA----HIPN-----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A H+ + A+LIGPEGG+ E++ + + P ++LGPRILR +T Sbjct: 183 QAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPRILRGET 242 Query: 229 AAVAAMALVQAICGDW 244 AA+AA AL GDW Sbjct: 243 AAIAATALWMGTVGDW 258 >gi|304321780|ref|YP_003855423.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis HTCC2503] gi|303300682|gb|ADM10281.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis HTCC2503] Length = 262 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 22/237 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G Q+HYL HVLR+ + +LLF+G+ GEW + I+ K VE Q+R T S + Sbjct: 28 GAQWHYLHHVLRLDQNAPVLLFDGRSGEWAAAITIASKKHGVLTVERQTRPMTPPSPLTL 87 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQCDILT 142 F+P+K + + +IQK E+G+ RPV T T + DR+ + + AAEQC+ L Sbjct: 88 YFAPLKKDPTELIIQKGTELGITDFRPVRTDRTIVPKAGLKDDRLASIAVEAAEQCERLD 147 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----------------LEKLHAIAH 186 P I+P +L+ L+ +C +V+ DE ++ L + ++A Sbjct: 148 TPTIHPLISLQDLIAA-PPSC-LVYCDEAGDDPSARWGGPSGHGEGAAAALLTRQESLAG 205 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P A+LIGPEGG+ E++TL +LP +SLGPR+LR++TAA+ A++L QA+ GD Sbjct: 206 SPG-ALLIGPEGGFTPTERQTLRALPGTLAVSLGPRVLRAETAALVAISLWQAVLGD 261 >gi|241761515|ref|ZP_04759602.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753879|ref|YP_003226772.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373823|gb|EER63356.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553242|gb|ACV76188.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 256 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 139/239 (58%), Gaps = 4/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L RL+V+ L ++ Q HYL V+R K G ++LF+ GEWL ++ G K + Sbjct: 12 LPRLYVEEKLSLEAVITPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + K+ + + D+ + +PIK R+D++ +K+ E+G+ I PVIT+ T N++ Sbjct: 72 QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ + + AAEQC +L + +L+ LL W + + FADET G E +E L Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AIL+GPEGG+ +E++ ++++ P+SLGPRILR+DTAA+AA AL A GDW Sbjct: 191 M--AAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDW 247 >gi|294084693|ref|YP_003551451.1| hypothetical protein SAR116_1124 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664266|gb|ADE39367.1| protein of unknown function DUF558 [Candidatus Puniceispirillum marinum IMCC1322] Length = 253 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 132/245 (53%), Gaps = 4/245 (1%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 H RL+VD PL + +Q HYL +V+R+ G I LFNG+DGEW I + K Sbjct: 8 HPAKARLYVDAPLQASGFVTVTKEQAHYLGNVMRLPLGTVIALFNGQDGEWHGVIDALDK 67 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + + Q+R QT D+ +F+P+K RLD++ QK+ E+G I PV T + Q + Sbjct: 68 QGGQIALTDQTRPQTNSPDLWLLFAPVKKARLDFIAQKASELGASRIWPVRTEFCQISRV 127 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET---CGSENSLE 179 +R+ I AAEQ + L + I L L + + +++ DE + N Sbjct: 128 KDERLAANAIEAAEQTERLDVARIMKFEKLATALAEREDDRLLIWCDEASAGAANHNITT 187 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L AI AILIGPEGG+ E++ L + SLGPRILR+DTAA+AA+A QA Sbjct: 188 ALAAIDPPKKAAILIGPEGGFSPAERKVLTQVDNCLTTSLGPRILRADTAAIAALACYQA 247 Query: 240 ICGDW 244 ICGDW Sbjct: 248 ICGDW 252 >gi|254454094|ref|ZP_05067531.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 238] gi|198268500|gb|EDY92770.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 238] Length = 209 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 122/216 (56%), Gaps = 14/216 (6%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 ++R+ G ++ LFNG+DGEW ++++ K + Q++ D+ +F+PIK +R Sbjct: 1 MMRLDVGADVSLFNGRDGEWHAQVAAASKKNGVLDCIVQTKPLQLPPDLWLVFAPIKKDR 60 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLPFIYPPTTL 152 ++++K+ E+G I PV T YTQ+ + DR++ + + AAEQC +P + Sbjct: 61 TSFIVEKAAELGAARIVPVQTEYTQSANRVRQDRLQAHALEAAEQCGGTYVPEVAEIQKF 120 Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETL 208 + WD +I+F DET + ++ IP AILIGPEGG+ +E+E L Sbjct: 121 AKMFNRWDPTRRILFCDETMVGQGAV--------IPTGEGPWAILIGPEGGFSDKERERL 172 Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + + +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 173 NGMACAHAISLGPRILRADTAAVAAMTLWQQALGDW 208 >gi|56552450|ref|YP_163289.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp. mobilis ZM4] gi|56544024|gb|AAV90178.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis ZM4] Length = 256 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 139/239 (58%), Gaps = 4/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L RL+V+ L ++ Q HYL V+R K G ++LF+ GEWL ++ G K + Sbjct: 12 LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + K+ + + D+ + +PIK R+D++ +K+ E+G+ I PVIT+ T N++ Sbjct: 72 QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ + + AAEQC +L + +L+ LL W + + FADET G E +E L Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AIL+GPEGG+ +E++ ++++ P+SLGPRILR+DTAA+AA AL A GDW Sbjct: 191 M--AAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDW 247 >gi|58617229|ref|YP_196428.1| hypothetical protein ERGA_CDS_05020 [Ehrlichia ruminantium str. Gardel] gi|58416841|emb|CAI27954.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 123/209 (58%), Gaps = 5/209 (2%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 HY++ V+R + D++ +FNGKDGEW+ +I + +I+ +++ +R Q K ++ F + Sbjct: 30 HYISKVMRATKCDHVKIFNGKDGEWIGEICELSNNIKIRIDKLTRKQVKSKNLTLCFGIV 89 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 K L +I+++ EMG+ ++P+ T++ ++ N+D+ R + I A+EQC+ L +P I P Sbjct: 90 KGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCRKWAIEASEQCERLDIPQISHP 149 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + L K N + DET + E L + N+ I++GPEGG+ SEE + + Sbjct: 150 ISFTDLKKLDTANINFIICDETGNGKKPAEIL---TNKNNIYIIVGPEGGFSSEELDFAY 206 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + F LSLG RILR DTA V+A+A V Sbjct: 207 T--FCNGLSLGTRILRVDTAVVSALAYVN 233 >gi|6580788|gb|AAF18294.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 256 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 4/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L RL+V+ L ++ Q HYL V+R K G ++LF+ GEWL ++ G K + Sbjct: 12 LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + K+ + + D+ + +PIK R+D++ +K+ E+G+ I PVIT+ T N++ Sbjct: 72 QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ + + AAEQC +L + +L LL W + + FADET G E +E L Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLISLLAEWPEDRALFFADET-GGEPMIEALSKRK 190 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AIL+GPEGG+ +E++ ++++ P+SLGPRILR+DTAA+AA AL A GDW Sbjct: 191 M--AAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDW 247 >gi|57239217|ref|YP_180353.1| 16S ribosomal RNA methyltransferase RsmE [Ehrlichia ruminantium str. Welgevonden] gi|57161296|emb|CAH58217.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 238 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 122/209 (58%), Gaps = 5/209 (2%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 HY++ V+R + D + +FNGKDGEW+ +I + +I+ +++ +R Q K ++ F + Sbjct: 30 HYISKVMRATKCDYVKIFNGKDGEWIGEICELSNNIKIRIDKLTRKQVKSKNLTLCFGIV 89 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 K L +I+++ EMG+ ++P+ T++ ++ N+D+ R + I A+EQC+ L +P I P Sbjct: 90 KGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCRKWAIEASEQCERLDIPQISHP 149 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + L K N + DET + E L + N+ I++GPEGG+ SEE + + Sbjct: 150 ISFTDLKKLDTANINFIICDETGNGKKPAEIL---TNKNNIYIIVGPEGGFSSEELDFAY 206 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + F LSLG RILR DTA V+A+A V Sbjct: 207 T--FCNGLSLGTRILRVDTAVVSALAYVN 233 >gi|262276809|ref|ZP_06054602.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114] gi|262223912|gb|EEY74371.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114] Length = 234 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67 RLF L K GD YHYL++V+R + G +I LFN +GE+L +I K + Sbjct: 5 RLFFIESLEEKKTINIIGDDYHYLSNVMRCEVGSDIFLFNENNGEYLCRIIEKNKKKLIL 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V ++ + Q+++ IF P K+++LD +IQK E+G+ + PVI+ +T+N N++R+ Sbjct: 65 EVIQKAEYEKIQNNINLIFCPPKSHKLDTLIQKCTEIGVKSFIPVISDHTENRKLNLNRI 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R + EQ + L +P I+ P + + L + ++ FAD S+ +L KL I Sbjct: 125 RKIIKESVEQSNQLNIPHIFDPISFDQFLNQQKY--KVFFAD--IQSDINLSKL-KINLK 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 N +ILIGPEG + S+E +TL S SLG RILRS+TAA+A++ L Sbjct: 180 ENNSILIGPEGDFSSKELKTLRSNNNFISFSLGKRILRSETAAIASLVL 228 >gi|310815076|ref|YP_003963040.1| hypothetical protein EIO_0578 [Ketogulonicigenium vulgare Y25] gi|308753811|gb|ADO41740.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25] Length = 244 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRF 67 RLFVD PL + DQ +YL +V+R++ G + L NG+DGEW S +S + Sbjct: 6 RLFVDHPLGPGQTVPLNADQANYLFNVMRLQPGTVLSLINGRDGEWDASVVSAAKRHGTL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q++ D+ F+PIK R D++I+K+ E+G + P+++ +T + +DR+ Sbjct: 66 LASRQTKPLQLPPDLWLAFAPIKKTRTDFIIEKATELGTARMIPILSDHTNSERVRVDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + I A EQC LP + P L L ++ + F DE + S A A Sbjct: 126 QAHVIEAVEQCGGTALPEVADPVALSAFLDHFPAGRTLWFCDEALVGQPS--GFPADATA 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ILIGPEGG+ + E++ L +LPF ++LGPRILR+DTAA+AA+ L QA GDW Sbjct: 184 GPACILIGPEGGFSARERDRLRTLPFARSIALGPRILRADTAALAALTLWQAGLGDW 240 >gi|58579175|ref|YP_197387.1| hypothetical protein ERWE_CDS_05110 [Ehrlichia ruminantium str. Welgevonden] gi|58417801|emb|CAI27005.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 239 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 121/209 (57%), Gaps = 5/209 (2%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 HY++ V+R + D + +FNGKDGEW+ +I + I+ +++ +R Q K ++ F + Sbjct: 31 HYISKVMRATKCDYVKIFNGKDGEWIGEICELSNHIKIRIDKLTRKQVKSKNLTLCFGIV 90 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 K L +I+++ EMG+ ++P+ T++ ++ N+D+ R + I A+EQC+ L +P I P Sbjct: 91 KGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCRKWAIEASEQCERLDIPQISHP 150 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + L K N + DET + E L + N+ I++GPEGG+ SEE + + Sbjct: 151 ISFTDLKKLDTANINFIICDETGNGKKPAEIL---TNKNNIYIIVGPEGGFSSEELDFAY 207 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + F LSLG RILR DTA V+A+A V Sbjct: 208 T--FCNGLSLGTRILRVDTAVVSALAYVN 234 >gi|71082844|ref|YP_265563.1| hypothetical protein SAR11_0136 [Candidatus Pelagibacter ubique HTCC1062] gi|71061957|gb|AAZ20960.1| conserved hypothetical protein [Candidatus Pelagibacter ubique HTCC1062] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLF L + K Q HY+ V+R+K G+ LFN GEW +KI + KSI F Sbjct: 5 RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNN-SGEWEAKILTISKSIVEF 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R + D+ FSPIK+N ++MIQK+ E+G+ P+I T N +R+ Sbjct: 64 NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ + + +P I P +L+ L + ++F D SEN + +AH Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNH--EKMDLIFTD--LNSENKKLDFNKLAHN 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 P ++IGPEG + EE+ + + V P+ + ILRS+TA ++A+++V Sbjct: 180 P-TCVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVN 229 >gi|91762733|ref|ZP_01264698.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique HTCC1002] gi|91718535|gb|EAS85185.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique HTCC1002] Length = 233 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLF L + K Q HY+ V+R+K G+ LFN GEW +KI + KSI F Sbjct: 5 RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNN-SGEWEAKILTISKSIVEF 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R + D+ FSPIK+N ++MIQK+ E+G+ P+I T N +R+ Sbjct: 64 NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ + + +P I P +L+ L + ++F D SEN + +AH Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNH--EKMGLIFTD--LNSENKKLDFNKLAHN 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 P ++IGPEG + EE+ + + V P+ + ILRS+TA ++A+++V Sbjct: 180 P-TCVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVN 229 >gi|330813642|ref|YP_004357881.1| ribosomal RNA small subunit methyltransferase E [Candidatus Pelagibacter sp. IMCC9063] gi|327486737|gb|AEA81142.1| ribosomal RNA small subunit methyltransferase E [Candidatus Pelagibacter sp. IMCC9063] Length = 238 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 3/230 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRF 67 R+F+ L + + DQ HY+++V+R+K GD +LLFNG DGE+L K++ K Sbjct: 6 RIFLSERLEENNKIELGKDQSHYISNVMRLKSGDELLLFNGIDGEFLGKVAGSEKKQTII 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V + R Q+K S++ F P+K RLD++IQK E+G+ + PVI+ +T + N +R+ Sbjct: 66 QVHAKQRDQSKPSNISLAFCPLKGQRLDFLIQKCTEVGLKSFIPVISDHTIVRNVNENRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I ++EQ D L +P + LE L ++F D N L +L Sbjct: 126 KKIIIESSEQSDQLHIPQVLSALNLEEFLHFLKKEDVVLFGD-ISSKNNDLTQLIEDKS- 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 N + IGPEG + +E+E + SLG ILRS+TAA+A + L+ Sbjct: 184 KNYILFIGPEGDFSPKEREIILKNVKFKSFSLGKNILRSETAAIAGLVLL 233 >gi|73667112|ref|YP_303128.1| hypothetical protein Ecaj_0493 [Ehrlichia canis str. Jake] gi|72394253|gb|AAZ68530.1| Conserved hypothetical protein 46 [Ehrlichia canis str. Jake] Length = 239 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 9/211 (4%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 HY+ +V+R D I LFNGKDGEW+ +I V + + V Q R Q + F+ + Sbjct: 30 HYICNVMRAANLDEIKLFNGKDGEWIGEIFEVSHNTKIIVNEQIRKQVATKCLVLCFAIV 89 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 K L ++++S EMG+ ++P+ T++ ++ N+D+ + + I AAEQC+ L +P I P Sbjct: 90 KNTALQNVVRQSTEMGVTLMQPLYTKHIATSNINLDKCKKWAIEAAEQCERLDIPDILSP 149 Query: 150 TTLEFL--LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 + L LK+ D+N V DET ++ E L + N+ I+IGPEGG+ ++E Sbjct: 150 ISFVDLGKLKSSDNN--FVICDETGKGKHPSEVLK---NKDNIHIIIGPEGGFSNDELNF 204 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +S F LSLG RIL+ DTA V+A+A V Sbjct: 205 AYS--FCDGLSLGTRILKVDTAVVSALAYVN 233 >gi|329114600|ref|ZP_08243359.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter pomorum DM001] gi|326696080|gb|EGE47762.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter pomorum DM001] Length = 257 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 11/221 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85 DQ YL VLR K GD++ +FN K GEWL++I+ + K F +E+Q RS T Q + Sbjct: 34 DQARYLGTVLRKKTGDHVRIFNAKSGEWLARITEIRKDKGFFALEHQLRSPTPQPALVLA 93 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+ +K + D ++ E+G+ P+IT T N DR+ A EQC+ +P Sbjct: 94 FALLKRDATDLALRMGTELGVTHFVPLITERTNTHRINPDRLHAIATEATEQCERFDVPH 153 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV----AILIGPEGGYH 201 I P + L +W ++ A E EN +H A +P+ L+GPEGG Sbjct: 154 IESPQSFTDFLASWPQEHRLFAAIER--GEN--RAIHTPALLPDAHAGDGFLVGPEGGLS 209 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 E + + +TP+SLGP +LR+DTA A +AL+ CG Sbjct: 210 DRECQMMLKYSCITPISLGPLVLRADTAVAAGLALIG--CG 248 >gi|254455755|ref|ZP_05069184.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter sp. HTCC7211] gi|207082757|gb|EDZ60183.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter sp. HTCC7211] Length = 232 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLF L I + K Q HY++ V+R+KE + LFN GEW +KI + K S+ F Sbjct: 5 RLFFPKSLSINLKDKLDKSQSHYVSKVMRIKENEVFSLFNS-SGEWEAKIISISKSSVEF 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R + ++ FSPIK+N ++MIQK+ E+G+ P+I T N +R+ Sbjct: 64 NITKQLRQKENLKELWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ + +T+P I P L+ L N + ++F D + N+ L + Sbjct: 124 EKVIIEAAEQSNRITVPIIEEPQKLKNFLSN---DMDLIFTD--LNTSNTKIDLKKLTTK 178 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P ++IGPEG + EE+E + V + + ILRS+TA ++A++++ Sbjct: 179 P-TCVIIGPEGDFSEEEREKILKFNGVQSIKINENILRSETAVISALSII 227 >gi|58002818|gb|AAW61712.1| Hypothetical protein GOX1976 [Gluconobacter oxydans 621H] Length = 254 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 9/217 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQTKQSDVQYIF 86 Q HYL +V+R G + +FN +DGEW ++I+ + K + ++ R+ V+ +F Sbjct: 42 QAHYLGNVMRQGVGSAVRVFNERDGEWAAEIASLKKDKGSVLLHRCERTPAPTDGVELLF 101 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +P+K + + +I+ E+G+ RPV+T T N++R+ AAEQC+ L +P I Sbjct: 102 APLKRDATELVIRMGTELGVTRFRPVVTERTNTHRLNLERLSLIATEAAEQCERLDIPEI 161 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 PP +L +L W + + A E E+ A + A+LIGPEGG+ E E Sbjct: 162 LPPESLRVVLAGWPDDRPLFAALERRPGED--------AGVQAAALLIGPEGGFSEAEVE 213 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 L V LSLGP +LR++TA A ++ + A D Sbjct: 214 LLRRHAAVHALSLGPLVLRAETAVCAGLSRLAARAED 250 >gi|229557995|ref|YP_192368.2| 16S ribosomal RNA methyltransferase RsmE [Gluconobacter oxydans 621H] Length = 250 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 9/217 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQTKQSDVQYIF 86 Q HYL +V+R G + +FN +DGEW ++I+ + K + ++ R+ V+ +F Sbjct: 38 QAHYLGNVMRQGVGSAVRVFNERDGEWAAEIASLKKDKGSVLLHRCERTPAPTDGVELLF 97 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +P+K + + +I+ E+G+ RPV+T T N++R+ AAEQC+ L +P I Sbjct: 98 APLKRDATELVIRMGTELGVTRFRPVVTERTNTHRLNLERLSLIATEAAEQCERLDIPEI 157 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 PP +L +L W + + A E E+ A + A+LIGPEGG+ E E Sbjct: 158 LPPESLRVVLAGWPDDRPLFAALERRPGED--------AGVQAAALLIGPEGGFSEAEVE 209 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 L V LSLGP +LR++TA A ++ + A D Sbjct: 210 LLRRHAAVHALSLGPLVLRAETAVCAGLSRLAARAED 246 >gi|258542801|ref|YP_003188234.1| 16S ribosomal RNA methyltransferase RsmE [Acetobacter pasteurianus IFO 3283-01] gi|256633879|dbj|BAH99854.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636938|dbj|BAI02907.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639991|dbj|BAI05953.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643047|dbj|BAI09002.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256646102|dbj|BAI12050.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256649155|dbj|BAI15096.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256652142|dbj|BAI18076.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655199|dbj|BAI21126.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 275 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 9/216 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85 DQ YL VLR K GD++ +FN GEWL++I+ + K F ++E Q R+ T+Q + Sbjct: 52 DQARYLGTVLRKKAGDHVRIFNANSGEWLARITEIRKDKGFFELERQLRAPTQQPTLVLA 111 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+ +K + D +++ E+G+ P+IT T N DR+ A EQC+ +P Sbjct: 112 FALLKRDATDLVLRMGTELGVTHFMPLITERTNTHRINPDRLHAIATEATEQCERFDVPQ 171 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV----AILIGPEGGYH 201 I P + L +W ++ FA G + + +H + +PN L+GPEGG Sbjct: 172 IESPQSFTDFLASWPQEHRL-FAAVERGEDRA---IHTPSLLPNAHAGDGFLVGPEGGLS 227 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + + +TP+SLGP +LR+DTA A +AL+ Sbjct: 228 DRECQMMLKYSCITPISLGPLVLRADTAVAAGLALI 263 >gi|218661479|ref|ZP_03517409.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli IE4771] Length = 151 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 +DY++QK+VEMG G ++PV+T++ Q N+D++R + AAEQC +L +P + P L Sbjct: 1 MDYLVQKAVEMGAGLLQPVMTQHVQGKITNLDKLRANVVEAAEQCGVLGIPAVAEPVKLS 60 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 LL W +I++ DE +N L L AI ++A+L+GPEGG+ EE+ L SL F Sbjct: 61 DLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-RHLALLVGPEGGFSEEERARLRSLDF 119 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 VT + LGPRILR+DTAAVAA+A+VQA GDW Sbjct: 120 VTAIPLGPRILRADTAAVAALAVVQATIGDW 150 >gi|326404264|ref|YP_004284346.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301] gi|325051126|dbj|BAJ81464.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301] Length = 226 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 116/212 (54%), Gaps = 5/212 (2%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S Q HYL V+R + GD +L+FN GE+ + I + + + + ++R+ + D Sbjct: 10 SAAQAHYLGAVMRRRAGDRLLVFNAGSGEFAATIGALDRRAATLVLGARTRAPEPEPDCW 69 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 F+P++ + + +++K+ E+G+ + PV+T TQ DR+ AAEQ + LT+ Sbjct: 70 LCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARLRADRLAAIATEAAEQSERLTI 129 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P L L ++ + ++ A E ++ L + A+L+GPEGG E Sbjct: 130 PDIAEPAPLAAFLASFPPSRRLFVAAE----RHAAPPLSPADPLQPHALLVGPEGGLAPE 185 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + + FV+P++LGPRILR++TAA+A +A Sbjct: 186 ELDAMARHAFVSPVTLGPRILRAETAAIAGLA 217 >gi|162149021|ref|YP_001603482.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter diazotrophicus PAl 5] gi|161787598|emb|CAP57194.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 250 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 7/236 (2%) Query: 9 RLFVDFPLCIKTQGKASGD----QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 RLF D + A D Q HYL VLR+ GD + LFN +DGEWL++I + + Sbjct: 6 RLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRD 65 Query: 65 I-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + ++ Q R+ + +F+P+K + D +++ E+G+ PV+T T N Sbjct: 66 RGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVN 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ T AAEQC+ L +P I P L L W ++ A E + Sbjct: 126 EARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIED 185 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +A +LIGPEGG+ E L + PFV +SLG ILR+DTA ++L+ A Sbjct: 186 VAD--GDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239 >gi|209545229|ref|YP_002277458.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter diazotrophicus PAl 5] gi|209532906|gb|ACI52843.1| protein of unknown function DUF558 [Gluconacetobacter diazotrophicus PAl 5] Length = 250 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 7/236 (2%) Query: 9 RLFVDFPLCIKTQGKASGD----QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 RLF D + A D Q HYL VLR+ GD + LFN +DGEWL++I + + Sbjct: 6 RLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRD 65 Query: 65 I-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + ++ Q R+ + +F+P+K + D +++ E+G+ PV+T T N Sbjct: 66 RGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVN 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ T AAEQC+ L +P I P L L W ++ A E + Sbjct: 126 EARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIED 185 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +A +L+GPEGG+ E L + PFV +SLG ILR+DTA ++L+ A Sbjct: 186 VAD--GDGLLVGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239 >gi|114328853|ref|YP_746009.1| 16S ribosomal RNA methyltransferase RsmE [Granulibacter bethesdensis CGDNIH1] gi|114317027|gb|ABI63087.1| surface protein [Granulibacter bethesdensis CGDNIH1] Length = 250 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 7/213 (3%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIF 86 + HYL V+R GD + LFN DGEW + I + K + Q RS + +F Sbjct: 35 RAHYLGTVMRRGVGDALSLFNATDGEWRAVIERIDRKGATLSLTEQIRSPVPEEGPWLVF 94 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + ++QK+ E+G+ + PV+T T N R+ + AAEQC+ L++P + Sbjct: 95 ALLKRTNTELVVQKATELGVSRLIPVMTTRTNAERINAARLEAIAVEAAEQCERLSIPVL 154 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L LL++W + ++ A E + HA A+L GPEGG+ +E Sbjct: 155 QAPQPLPALLRDWPEDRRLYAAIERS------DVAHARGVAGPSALLTGPEGGFAEQELV 208 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L S V P+SLG +LR++TAA+A +AL+ A Sbjct: 209 MLRSHAHVIPVSLGRTVLRAETAAIAGLALLTA 241 >gi|190571358|ref|YP_001975716.1| hypothetical protein WPa_0963 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018754|ref|ZP_03334562.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357630|emb|CAQ55071.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995705|gb|EEB56345.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 231 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 13/238 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 RL+V+ L Q HY+ +V+R+K+ DNI LFNGKDGEWL ++ + KS + Sbjct: 5 RLYVEEALSQNVSLALHPRQSHYIYNVMRLKKHDNIYLFNGKDGEWLGEVVNISSKSTKI 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ +++ Q + ++ + +K+ L +++++ EMG+ I+ + T T + N+ R Sbjct: 65 IIKERTKQQQHEKNLYLYCALVKSGALSNIVRQATEMGVTCIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ ++P I+ P + F + N V DET G K+ + Sbjct: 125 KLQAIEAAEQSGRTSIPQIFLP--INFCELSDSQNKNFVLCDET-GEGQPPNKV--LKGK 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 NVAI++GPEGG+ S E ++ + F LSLG RILR DTA VAA+ +WY Sbjct: 180 KNVAIIVGPEGGFSSCELDSAN--KFCQKLSLGKRILRVDTAVVAALTFT-----NWY 230 >gi|157825352|ref|YP_001493072.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia akari str. Hartford] gi|157799310|gb|ABV74564.1| hypothetical protein A1C_01170 [Rickettsia akari str. Hartford] Length = 254 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++++ L ++ + + D HY+ VLR+K D + +FNG +GE+L+ I+ +GK +I Sbjct: 5 RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRIFNGTEGEFLAHITAIGKHNISV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ Q + +S + + IK ++L I + ++G+ I P+IT Q N++R+ Sbjct: 65 RLKEQLKKPYTESALTLAVAIIKQDKLMLAINMATQLGITKIIPLITSRCQFRTVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + L P I T++ LK HN +++A+E ENS+ ++ ++ Sbjct: 125 TKCVIEATEQSERLIPPIIEKAITIQDCLK--KHNNFMLYANEHEKEENSILRISSLLD- 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+AI+IGPEGG+ ++E E L S +SLG ILR++TA + A+ V+ Sbjct: 182 NNIAIIIGPEGGFTNDELELLASYKNTKSVSLGSNILRAETAVITAIVQVK 232 >gi|88607769|ref|YP_505371.1| hypothetical protein APH_0794 [Anaplasma phagocytophilum HZ] gi|88598832|gb|ABD44302.1| conserved hypothetical protein TIGR00046 [Anaplasma phagocytophilum HZ] Length = 239 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 119/213 (55%), Gaps = 9/213 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 DQ HY+ V+R++ D ++LF+G G+W + IS + K + +VE+ K D+ Sbjct: 29 SDQAHYIRDVMRVRISDAVVLFDGVTGDWFATISEISRKKVEVRVEHLVSEYVKSRDLML 88 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 + +K + + +++++ EMG+ I+P+ T Y+ + N+ + R + I AAEQC+ +P Sbjct: 89 CIALVKQDTMRSVVRQATEMGVTQIQPIRTEYSVVSDINVQKCRQWAIEAAEQCERQDIP 148 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 I + +EF N D ++V DET E L + N+ I+IGPEGG+ E Sbjct: 149 EI--ASVMEFTHLN-DLGKKLVLCDETGKGRMPAEVLRS---KENLGIIIGPEGGFS--E 200 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E + + F +SLG RILR DTA VAA+A V Sbjct: 201 RELVCAESFCEKMSLGHRILRVDTAVVAALAYV 233 >gi|68171492|ref|ZP_00544876.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str. Sapulpa] gi|88658073|ref|YP_507353.1| hypothetical protein ECH_0540 [Ehrlichia chaffeensis str. Arkansas] gi|67999098|gb|EAM85765.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str. Sapulpa] gi|88599530|gb|ABD44999.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 241 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 13/234 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD L + HY+ HV+R + D + LFNG+DGEW+ +I + + + + Sbjct: 11 RLYVDCTLSKSSIVILDNIASHYICHVMRAAKLDEVKLFNGRDGEWIGEIFELSSNTKIR 70 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V R Q + S +K L +I+++ EMG+ I+P+ T++ ++ N+ + + Sbjct: 71 VNELIRRQYVPKSLTLCLSIVKNTALQNVIRQATEMGVTFIQPIYTQHIATSNINLSKCK 130 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFL----LKNWDHNCQIVFADETCGSENSLEKLHAI 184 + I AAEQC L +P I P ++F+ LK D+N V DET E L Sbjct: 131 KWAIEAAEQCGRLDIPDISFP--IDFIDLKQLKTDDNN--FVICDETGKGHPPSEVLKGK 186 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 NV I+IGPEGG+ ++E +S F LSLG ILR DTA V+A+A V+ Sbjct: 187 N---NVHIIIGPEGGFSNDELSFAYS--FCDGLSLGTTILRVDTAVVSALAYVK 235 >gi|229594326|ref|YP_001499059.2| 16S ribosomal RNA methyltransferase RsmE [Rickettsia massiliae MTU5] Length = 243 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 134/231 (58%), Gaps = 3/231 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 5 RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ Q + +S + + IK ++L I + ++G+ I P+ITR Q N++R+ Sbjct: 65 RLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQFRSVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + LT P I T++ LK +N +++A+E +NS+ ++ + Sbjct: 125 TKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSILRISSSLSN 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ I++GPEGG+ ++E E L S +SLG ILR++TAA+ A+ V+ Sbjct: 183 SDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITAIVQVR 233 >gi|120555960|ref|YP_960311.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei VT8] gi|120325809|gb|ABM20124.1| 16S rRNA m(3)U-1498 methyltransferase [Marinobacter aquaeolei VT8] Length = 244 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F D PL + Q + + +++ VLRM+ G +LLFNG ++ + I+ GK Sbjct: 2 RIPRIFTDSPLAVGGQCQLDDNAANHVGRVLRMQAGQALLLFNGDGQDYHATITEAGKKH 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 ++ V + ++T +S ++ + + K +R+DY +QK+VEMG+ I P+ T + Sbjct: 62 VQVAVTEAAENET-ESSLRVVLAQTLSKGDRMDYAVQKAVEMGVSEIVPLTTERC-DVKL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGS 174 DR + ISAAEQC +P I P T++ L++ + ++V T S Sbjct: 120 KGDREDKRLRHWQQVAISAAEQCGRARVPEIQPVMTVQQWLEHARACDLRLVLHHRTERS 179 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+LEK +I A++IGPEGG +EE F+ P++LGPR+LR++TA VAA+ Sbjct: 180 LNTLEKPSSI------ALMIGPEGGLTAEEIALAEDNGFL-PVALGPRVLRTETAPVAAI 232 Query: 235 ALVQAICGD 243 AL Q + GD Sbjct: 233 ALCQWLWGD 241 >gi|157844011|gb|ABV84512.1| hypothetical protein RMA_0218 [Rickettsia massiliae MTU5] Length = 283 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 134/231 (58%), Gaps = 3/231 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 45 RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSV 104 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ Q + +S + + IK ++L I + ++G+ I P+ITR Q N++R+ Sbjct: 105 RLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQFRSVNIERL 164 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + LT P I T++ LK +N +++A+E +NS+ ++ + Sbjct: 165 TKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSILRISSSLSN 222 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ I++GPEGG+ ++E E L S +SLG ILR++TAA+ A+ V+ Sbjct: 223 SDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITAIVQVR 273 >gi|42521009|ref|NP_966924.1| hypothetical protein WD1212 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630878|ref|YP_002727669.1| putative methyltransferase [Wolbachia sp. wRi] gi|225677207|ref|ZP_03788200.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|42410750|gb|AAS14858.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590731|gb|EEH11965.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592859|gb|ACN95878.1| putative methyltransferase [Wolbachia sp. wRi] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 69 VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q + + Y++ +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ +++P I PP L + N V DET ++ L+ Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVLKGKK----- 177 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 NVAI++GPEGG+ S E + F LSLG RILR DTA VAA+ Sbjct: 178 -NVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVVAALTF 223 >gi|218516761|ref|ZP_03513601.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli 8C-3] Length = 133 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 87/133 (65%), Gaps = 1/133 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ +Q++YLA+VLRM+ ILLFNG+DGEW + +S+ Sbjct: 1 MRANFRMQRLFVDAPLSAGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEQMRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTI 132 N+D++R + Sbjct: 121 KITNLDKLRANVV 133 >gi|49082184|gb|AAT50492.1| PA0419 [synthetic construct] Length = 241 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 31/253 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R FVD PL + Q Q HY+ VLR GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFVDQPLSL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R ++ Q Q ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +LP I+PP LE L+ D + ++V Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLV------------ 169 Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 LH +A H P +A L+GPEGG E E + F + LGPR+LR++TA V Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHS-ARLGPRVLRTETAPV 226 Query: 232 AAMALVQAICGDW 244 A+A+ Q + GD+ Sbjct: 227 VALAVAQQLWGDF 239 >gi|15595616|ref|NP_249110.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PAO1] gi|218889161|ref|YP_002438025.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa LESB58] gi|254237347|ref|ZP_04930670.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254243517|ref|ZP_04936839.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9946275|gb|AAG03808.1|AE004479_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126169278|gb|EAZ54789.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196895|gb|EAZ60958.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769384|emb|CAW25144.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 240 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 31/253 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R FVD PL + Q Q HY+ VLR GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFVDQPLSL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R ++ Q Q ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +LP I+PP LE L+ D + ++V Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLV------------ 169 Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 LH +A H P +A L+GPEGG E E + F + LGPR+LR++TA V Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHS-ARLGPRVLRTETAPV 226 Query: 232 AAMALVQAICGDW 244 A+A+ Q + GD+ Sbjct: 227 VALAVAQQLWGDF 239 >gi|296386918|ref|ZP_06876417.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PAb1] gi|313111958|ref|ZP_07797747.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa 39016] gi|310884249|gb|EFQ42843.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa 39016] Length = 240 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 124/253 (49%), Gaps = 31/253 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R FVD PL + Q Q HY+ VLR GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFVDQPLAL-GQHDLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R ++ Q Q ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +LP I+PP LE L+ D + ++V Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLV------------ 169 Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 LH +A H P +A L+GPEGG E E + F LGPR+LR++TA V Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHA-ARLGPRVLRTETAPV 226 Query: 232 AAMALVQAICGDW 244 A+A+ Q + GD+ Sbjct: 227 VALAVAQQLWGDF 239 >gi|58698200|ref|ZP_00373121.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of Drosophila ananassae] gi|58535281|gb|EAL59359.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of Drosophila ananassae] Length = 228 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 69 VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q + + Y++ +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ +++P I PP L + N V DET ++ L+ Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVLKGKK----- 177 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 NVAI++GPEGG+ S E + F LSLG RILR DTA +AA+ Sbjct: 178 -NVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVLAALTF 223 >gi|116054150|ref|YP_788593.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa UCBPP-PA14] gi|115589371|gb|ABJ15386.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 240 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 31/253 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R FVD PL + Q Q HY+ VLR GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFVDQPLAL-GQHDLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R ++ Q Q ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +LP I+PP LE L+ D ++V Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDELRLV------------ 169 Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 LH +A H+P +A L+GP+GG E E + F LGPR+LR++TA V Sbjct: 170 --LHPVAAPLASHVPPSRLAFLVGPKGGLSDAEVEQAKAAGFHA-ARLGPRVLRTETAPV 226 Query: 232 AAMALVQAICGDW 244 A+A+ Q + GD+ Sbjct: 227 VALAVAQQLWGDF 239 >gi|148260870|ref|YP_001234997.1| hypothetical protein Acry_1876 [Acidiphilium cryptum JF-5] gi|146402551|gb|ABQ31078.1| protein of unknown function DUF558 [Acidiphilium cryptum JF-5] Length = 238 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 5/232 (2%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + L RL + PL S Q HYL V+R + GD +L+FN GE+ + I + + Sbjct: 2 ASLIRLHLPSPLSPGATLATSAAQAHYLGAVMRRRAGDPLLVFNAGSGEFAATIGALDRR 61 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + ++R+ + D F+P++ + + +++K+ E+G+ + PV+T TQ Sbjct: 62 AATLVLGARTRAPEPEPDCWLCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARLR 121 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 DR+ AAEQ + LT+P I P L L + + ++ A E ++ L Sbjct: 122 ADRLAAIATEAAEQSERLTIPDIAEPAPLAAFLAAFPPSRRLFVAAE----RHAAPPLSP 177 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + A+L+GPEGG EE + + FV+P++LGPRILR++TAA+A +A Sbjct: 178 ADPLQPHALLVGPEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLA 229 >gi|149375982|ref|ZP_01893748.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893] gi|149359619|gb|EDM48077.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893] Length = 244 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ D PL + ++ VLRM+ G +LLFNG ++ + I+ GK Sbjct: 2 RIPRIYTDSPLSEGATAGLDDNAAQHVGRVLRMQPGQELLLFNGDGNDYPATITEAGKKH 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + +V S + T +S ++ + K +R+DY +QK+VEMG+ I P+ T + Sbjct: 62 VSVEVGTPSANAT-ESHLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERC-DVKL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGS 174 DR ++ ISAAEQC +P I P TL E+ + D + ++V T S Sbjct: 120 KGDREDKRLRHWQSVAISAAEQCGRARVPEIVPVMTLSEWFENSGDCDLRLVLHHRTEQS 179 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L K VA++IGPEGG +E + F+ P++LGPR+LR++TA VAAM Sbjct: 180 LNTLAKPT------RVALMIGPEGGLSPDEITAAANAGFL-PVALGPRVLRTETAPVAAM 232 Query: 235 ALVQAICGD 243 AL Q + GD Sbjct: 233 ALCQWLWGD 241 >gi|152984501|ref|YP_001345914.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PA7] gi|150959659|gb|ABR81684.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 240 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R FVD PL + Q Q HY+ VLR GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFVDQPLAL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELIEVGKKNV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R ++ Q Q ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +LP I+PP LE L+ D ++V Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPRIHPPLALEDWLRQRDDELRLVLHPVAA------ 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + A ++A L+GPEGG E E + F + LGPR+LR++TA V A+A+ Q Sbjct: 176 -PLASHARPASLAFLVGPEGGLGDAEVEQAQAAGFHS-ARLGPRVLRTETAPVVALAVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|104783966|ref|YP_610464.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila L48] gi|95112953|emb|CAK17681.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 239 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R F+D PL + + Q HY+ VLRM GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFIDAPLGLGEH-ELPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q + S ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVSLDQALPGQAESSLHVHLGQGLSRGERMDWAIQKATELGVNEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC ++P I+PP TL +K D + ++V Sbjct: 122 RADKRLAHWRQVAISACEQCGRSSVPVIHPPVTLAEWIKGSDADLKLVLHPVAA------ 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + A +A LIGPEGG + E E + F LGPR+LR++TA V A+++ Q Sbjct: 176 -PLTSHAKPARLAFLIGPEGGLNDAEVEQAKAAGFHA-ARLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|107099405|ref|ZP_01363323.1| hypothetical protein PaerPA_01000417 [Pseudomonas aeruginosa PACS2] Length = 240 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 31/253 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R FVD PL + Q Q HY+ VLR GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFVDQPLSL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R ++ Q Q ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +LP I+PP LE L+ + ++V Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRGDDLRLV------------ 169 Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 LH +A H P +A L+GPEGG E E + F + LGPR+LR++TA V Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHS-ARLGPRVLRTETAPV 226 Query: 232 AAMALVQAICGDW 244 A+A+ Q + GD+ Sbjct: 227 VALAVAQQLWGDF 239 >gi|269958740|ref|YP_003328527.1| putative methyltransferase [Anaplasma centrale str. Israel] gi|269848569|gb|ACZ49213.1| putative methyltransferase [Anaplasma centrale str. Israel] Length = 243 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 18 IKTQGKAS--GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74 I+T + + Q Y+ V+R + D +LLF+G GEWL +IS + K ++ + E SR Sbjct: 19 IRTGARVTLNSSQARYVRDVMRARHDDAVLLFDGIRGEWLCRISCISKKTVEVEAETLSR 78 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + F+ +K++ + +++++ EMG+ +P+ T Y+ + + + + A Sbjct: 79 KHVRTRTLVLCFALVKSDTVRNVVRQATEMGVTLFQPIRTEYSSVHDVDSKKCHLWAVEA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +EQC +P + P L + + Q V DET G E LH +V +++ Sbjct: 139 SEQCGRQDVPEVAPVVDFRTLCEFHNPERQFVLCDETGGGRPPYEVLHGGR---DVWVVV 195 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEGG+ EE S F +SLGPRILR DTA V A+A V Sbjct: 196 GPEGGFSDEELRL--SENFCDKMSLGPRILRVDTAVVCALAHVN 237 >gi|157828086|ref|YP_001494328.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800567|gb|ABV75820.1| hypothetical protein A1G_01190 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 244 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 5 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 65 VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ ++ Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSLLS 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|319717302|ref|YP_001649575.3| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii str. Iowa] gi|165907873|gb|ABY72169.1| hypothetical protein RrIowa_0258 [Rickettsia rickettsii str. Iowa] Length = 257 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 18 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 77 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 78 VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 137 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ ++ Sbjct: 138 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSLLS 195 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 196 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234 >gi|292571762|gb|ADE29677.1| hypothetical protein rpr22_CDS160 [Rickettsia prowazekii Rp22] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 136/237 (57%), Gaps = 16/237 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++++ L ++ + + D HY+ VLR+K D++ +FNG DGE+L++I+ +GK ++ Sbjct: 5 RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQIGKNNLSV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ Q + +S + + IK+++L I + ++G+ I P+ITR Q N++R+ Sbjct: 65 VLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQFRTVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186 I A EQ + L P I TL+ LK +N I++A+E EK+ H+I H Sbjct: 125 MKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEH-------EKVKHSILH 175 Query: 187 IP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I ++AI+IGPEGG+ ++E E L +SLG ILR++TAA++ ++ V+ Sbjct: 176 ISSLLSKDIAIIIGPEGGFTNDELELLALYNNTQSISLGSNILRTETAAISLISQVR 232 >gi|330994720|ref|ZP_08318643.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter sp. SXCC-1] gi|329758361|gb|EGG74882.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter sp. SXCC-1] Length = 246 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY--I 85 Q HYL VLR + G + +FN +DG+W I ++ + R ++ R++ ++ V + Sbjct: 29 QAHYLGAVLRQQAGGEVAVFNARDGQWQGVIDHLRRE-RCQIRLVERTRAPEATVGLGLL 87 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 F+P+K + + +I+ E+G+ PV+T T N R+ + AAEQC+ L +P Sbjct: 88 FAPLKRDATETVIRMGTELGVTRFCPVVTERTNTHRLNAARLESIAREAAEQCERLDVPG 147 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 I P L LL W + A E S + A +LIGPEGG+ + E+ Sbjct: 148 IDPLVPLVNLLAQWPEGISLFAA-----LERSAPRPMAAPAQAGDCVLIGPEGGFSAREQ 202 Query: 206 ETLHSLPFVTPLSLGPRILRSDT 228 + L + FV P+SLG +LR+DT Sbjct: 203 DMLRARAFVRPVSLGSLVLRADT 225 >gi|229220790|ref|YP_153918.2| hypothetical protein AM686 [Anaplasma marginale str. St. Maries] Length = 243 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86 Q HY+ V+R K GD +LLF+G GEWL ++S + K ++ + E R + + F Sbjct: 31 QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 90 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + +++++ EMG+ +P+ T Y+ + + R + + A+EQC +P + Sbjct: 91 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 150 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L + + + Q V DET G + E L + V +++GPEGG+ +EE Sbjct: 151 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 207 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + F +SLG RIL+ DTA V A+A V Sbjct: 208 SCED--FCDKMSLGSRILKVDTAVVCALAYV 236 >gi|222475209|ref|YP_002563625.1| hypothetical protein AMF_516 [Anaplasma marginale str. Florida] gi|56388076|gb|AAV86663.1| hypothetical protein AM686 [Anaplasma marginale str. St. Maries] gi|222419346|gb|ACM49369.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 260 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86 Q HY+ V+R K GD +LLF+G GEWL ++S + K ++ + E R + + F Sbjct: 48 QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 107 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + +++++ EMG+ +P+ T Y+ + + R + + A+EQC +P + Sbjct: 108 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 167 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L + + + Q V DET G + E L + V +++GPEGG+ +EE Sbjct: 168 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 224 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + F +SLG RIL+ DTA V A+A V Sbjct: 225 SCED--FCDKMSLGSRILKVDTAVVCALAYV 253 >gi|255003188|ref|ZP_05278152.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str. Puerto Rico] Length = 244 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86 Q HY+ V+R K GD +LLF+G GEWL +IS + K ++ + E R + + F Sbjct: 32 QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRISCISKKTVEVEAEKLLRKHVRTRTLVLCF 91 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + +++++ EMG+ +P+ T Y+ + + R + + A+EQC +P + Sbjct: 92 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSVHDIDSRKCRLWAVEASEQCGRQDVPEV 151 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L + + + Q V DET G + E L + V +++GPEGG+ +EE Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 208 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + F +SLG RIL+ DTA V A+A V Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYV 237 >gi|254995038|ref|ZP_05277228.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str. Mississippi] Length = 244 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86 Q HY+ V+R K GD +LLF+G GEWL ++S + K ++ + E R + + F Sbjct: 32 QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 91 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + +++++ EMG+ +P+ T Y+ + + R + + A+EQC +P + Sbjct: 92 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 151 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L + + + Q V DET G + E L + V +++GPEGG+ +EE Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 208 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + F +SLG RIL+ DTA V A+A V Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYV 237 >gi|255004318|ref|ZP_05279119.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str. Virginia] Length = 244 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86 Q HY+ V+R K GD +LLF+G GEWL ++S + K ++ + E R + + F Sbjct: 32 QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 91 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + +++++ EMG+ +P+ T Y+ + + R + + A+EQC +P + Sbjct: 92 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 151 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L + + + Q V DET G + E L + V +++GPEGG+ +EE Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 208 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + F +SLG RIL+ DTA V A+A V Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYV 237 >gi|167036024|ref|YP_001671255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1] gi|166862512|gb|ABZ00920.1| protein of unknown function DUF558 [Pseudomonas putida GB-1] Length = 239 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 33/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R F+D PL + Q HY+ VLRM GD + LF+G E+L ++ VG K++ Sbjct: 3 LSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY 116 R ++ ++ T Q+D SP+ + R+D+ IQK+ E+G I P+++ Sbjct: 62 RVSLD---QALTGQAD-----SPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER 113 Query: 117 T------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE 170 + + R ISA EQC TLP I+PP L L + + ++V Sbjct: 114 CEVRLKDERADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLTEWLSSTQADLKLVL--- 170 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E L + A +A LIGPEGG E E + F LGPR+LR++TA Sbjct: 171 ----HPVAEPLTSHAKPAGLAFLIGPEGGLSEAEVEQAKAAGFHA-ARLGPRVLRTETAP 225 Query: 231 VAAMALVQAICGDW 244 V A+++ Q + GD+ Sbjct: 226 VVALSVAQQLWGDF 239 >gi|90020116|ref|YP_525943.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus degradans 2-40] gi|89949716|gb|ABD79731.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus degradans 2-40] Length = 241 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+++D P+ G HYL VLRM+ G ++LFNGK GE+ + I GK Sbjct: 2 RIPRIYIDKPITANANLDLDGPTAHYLLKVLRMESGRELILFNGKGGEYSAVIESAGKKN 61 Query: 66 RF-KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 F KV ++ +R + + +R+D+++QK+ E+G+ I P+ + Sbjct: 62 VFCKVGKHNTRESESSLQTELAIGISRGDRMDWVLQKATELGVSRIIPLFADRSEVKLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M + ISA EQC TLP + P L+ L + + V T Sbjct: 122 ERLEKKMQHWQQILISACEQCTRNTLPTLLPACPLDEYLASTQAEQKFVLHHRTH----- 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL I + A+LIGPEGG E + F L+LGPRILR++TA +AA++++ Sbjct: 177 -KKLRDITKPKSAALLIGPEGGLTDNEIQNAERKGF-NALALGPRILRTETAPIAALSIL 234 Query: 238 QAICGD 243 Q + GD Sbjct: 235 QFVWGD 240 >gi|51473368|ref|YP_067125.1| hypothetical protein RT0159 [Rickettsia typhi str. Wilmington] gi|51459680|gb|AAU03643.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 4/231 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R++++ L ++ + D HY+ VLR+K D++ +FNG DGE+L+ I+ +GK+ I Sbjct: 5 RIYINSHLAENSKIELVRDNVHYVKTVLRLKINDSLRIFNGSDGEFLAHITKIGKNNISV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q + + + + IK+++L +I + ++G+ I P+IT Q N++R+ Sbjct: 65 VLTEQLKKAYIEPALTLAVAIIKSDKLMLIINMATQLGITKIIPLITSRCQFKTVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + L P I TL+ LK +N I++A+E +NS+ ++ ++ Sbjct: 125 IKCVIEATEQSERLNPPIIEHAITLKDYLK--KNNNLILYANEHEKVKNSILRISSLLA- 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++AI+IGPEGG+ ++E E L +SLG ILR++TAA+ +A V+ Sbjct: 182 NDIAIIIGPEGGFTNDELELLALYKNTQSISLGSNILRTETAAITVIAQVR 232 >gi|325273070|ref|ZP_08139378.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51] gi|324101804|gb|EGB99342.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51] Length = 239 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R F+D PL + Q HY+ VLRM GD + LF+G E+ + VG K++ Sbjct: 3 LSRFFIDAPLSLGEHDLPEA-QAHYVGRVLRMAPGDAVQLFDGSGQEYRGHLLEVGKKTV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q ++ + + R+D+ IQK+ E+G AI P+I+ + Sbjct: 62 RVSLDQAFAGQADSPLHIHLGQGLSRGERMDWAIQKATELGANAITPIISERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC TLP I PPTTL L + ++V Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPAINPPTTLAEWLSSTHAELKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + A +A LIGPEGG E E F LGPR+LR++TA V A+++ Q Sbjct: 175 EPLTSHARPATLAFLIGPEGGLGDAEVEQAQRAGFQA-ARLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|312963582|ref|ZP_07778063.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6] gi|311282091|gb|EFQ60691.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6] Length = 239 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F D PL + + Q HY++ VLRM EGD + LF+G E+L + VGK R Sbjct: 3 LSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKK-R 60 Query: 67 FKVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ + +I + R+D+ IQK+ E+G+ AI P+ + Sbjct: 61 VTVQLTQHFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC T+P I+PP L LK + + ++V Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + + A ++A LIGPEGG E ET + LGPR+LR++TA V A+A+ Sbjct: 174 AEPMVSHAKPSSLAFLIGPEGGLTDNEVETAQGAGYHAA-RLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|70733090|ref|YP_262863.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens Pf-5] gi|68347389|gb|AAY94995.1| conserved hypothetical protein TIGR00046 [Pseudomonas fluorescens Pf-5] Length = 239 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F+D PL + + Q HY+ VLRM EG + +F+G E+ + VGK R Sbjct: 3 LSRFFIDAPLSLGEH-ELPEAQAHYIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKK-R 60 Query: 67 FKVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 +V+ +Q I + R+D+ IQK+ E+G+ I P+ + + Sbjct: 61 VRVQLNESFAGQQESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKD 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R ISA EQC +P I+PP L +K + ++V Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSQVPVIHPPVLLADWIKQARADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L + A ++A LIGPEGG E E HS F+ P LGPR+LR++TA V A+A+ Sbjct: 174 AQPLESHAKPASLAFLIGPEGGLTDAEVELSHSAGFL-PARLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|126665848|ref|ZP_01736829.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17] gi|126629782|gb|EBA00399.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17] Length = 244 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 22/251 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ D PL + + ++ VLRM+ G + LFNG ++ + I+ K + Sbjct: 2 RIPRIYTDTPLQAGADAQLDDNAAQHVGRVLRMQPGQALSLFNGDGQDYRALIASASKKN 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + +VE Q + + +S ++ + K +R+DY +QK+ EMG+ I P+ T + Sbjct: 62 VTVQVE-QPTANSSESALEIVLGQTLSKGDRMDYAVQKATEMGVTRIVPLSTERC-DVRL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGS 174 DR R+ ISAAEQC +P I P + E+L + + ++V T S Sbjct: 120 KGDREDKRLSHWRSVAISAAEQCGRARVPDILPVMNITEWLEYSQRCDVRLVLHHRTEQS 179 Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +SL K PN VA++IGPEGG ++E F+ P++LGPR+LR++TA VAA Sbjct: 180 LDSLAK-------PNSVALMIGPEGGLSADEIAQAEKSGFL-PIALGPRVLRTETAPVAA 231 Query: 234 MALVQAICGDW 244 MAL Q + GD+ Sbjct: 232 MALCQWLWGDF 242 >gi|67459503|ref|YP_247127.1| hypothetical protein RF_1111 [Rickettsia felis URRWXCal2] gi|67005036|gb|AAY61962.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 121/218 (55%), Gaps = 3/218 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++++ L ++ + + D HY+ VLR+K D + +FNG DGE+L++I+Y+GK + Sbjct: 5 RIYINSHLAENSKIELANDHVHYVKTVLRLKVNDGLRIFNGTDGEFLAQITYIGKHKLSV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ Q + +S + + IK ++L I + ++G+ I P+ITR Q N++R+ Sbjct: 65 RLKEQLKKPYTESALTLAAAIIKQDKLMLAINMATQLGITKIIPLITRRCQFRTINIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ + Sbjct: 125 TKCVIEATEQSERLTPPIIEKAITIQDYLK--QNNNLMLYANEHEKEENSILRILSSLSN 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I+IGPEGG +E L S +SLG ILR Sbjct: 183 SDITIIIGPEGGLTDDELGLLASYKNTKSVSLGNNILR 220 >gi|237747297|ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229378648|gb|EEO28739.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 243 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 136/248 (54%), Gaps = 25/248 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RLF DFPL + D ++ V+R+ G+ I LFNG+ GE+ ++I G++ R Sbjct: 1 MTRLFCDFPLAVGACLDLPKDTARHI-MVVRLSRGEAITLFNGQGGEYRARILETGRN-R 58 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + E S S + ++ Y S ++ ++D++I+K+ E+G+ I P+ T+ + Sbjct: 59 VRAEIVSFS-PHEVELPYEISLVQGIPEAGKMDWIIEKAAELGVHRIVPLATQRSV-VRV 116 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETC 172 N DR+ ++ +SA+EQC L I P + L+N +I+F A + Sbjct: 117 NADRIEKRLARWQSIVVSASEQCGRNRLLAIGQPVNFDAYLQNSPEPSKIMFSPRASHSL 176 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S + +K HAI+ +LIGPEGG+ +EE+E L VT LS+GPRILR++TA +A Sbjct: 177 ASWATGQKPHAIS------LLIGPEGGFSAEEEE-LARQKGVTFLSMGPRILRTETAGLA 229 Query: 233 AMALVQAI 240 A++ + AI Sbjct: 230 AVSAINAI 237 >gi|296116281|ref|ZP_06834897.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter hansenii ATCC 23769] gi|295977100|gb|EFG83862.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter hansenii ATCC 23769] Length = 247 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 7/225 (3%) Query: 9 RLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 RLF+D P+C + D+ HYL +VLR+ G +++FN +DGEW + I + + Sbjct: 6 RLFMDPQAFPPMCPDAVIRLEPDRAHYLGNVLRLSAGGRVVVFNARDGEWSATIEVLRRD 65 Query: 65 I-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 ++ + R +F+P+K + + +I+ E+G+ PVIT T N Sbjct: 66 RGEIRLVHMDRPPRVTQGPGIMFAPLKRDATEMIIRMGTELGVECFYPVITERTNTHRLN 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ A+EQC+ L +P I P + + + + Q+ A E + + ++ Sbjct: 126 EGRLSAIAREASEQCERLDVPAIAPIRPMMEAIAHAPTDMQLFVALERL--DPTAQESEV 183 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P A+LIGPEGG+ E++ L P LSLGP +LR+DT Sbjct: 184 PRACPGDALLIGPEGGFSPREQDFLRGRPATRLLSLGPLVLRADT 228 >gi|311695817|gb|ADP98690.1| ribosomal RNA small subunit methyltransferase E [marine bacterium HP15] Length = 244 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 28/253 (11%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + L + + + ++ VLRM+ G +LLFNG ++ + IS K Sbjct: 2 RIPRIYTNSALAQGSTAELDDNAAQHVGRVLRMQAGQELLLFNGDGNDYPATISSASKK- 60 Query: 66 RFKVEYQ---SRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 VE Q + T +S ++ + K +R+DY +QK+VEMG+ I P+ T + Sbjct: 61 --NVEVQVGTPEANTTESPLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERC-DV 117 Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC 172 DR ++ ISAAEQC +P I P T+ E+L + D ++V T Sbjct: 118 KLKGDREDKRLRHWQSVAISAAEQCGRARVPEILPVMTVSEWLEHSRDCEVRLVLHHRT- 176 Query: 173 GSENSLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E++L+ + IP VA++IGPEGG EE F+ P++LGPR+LR++TA Sbjct: 177 --EHALKSI-----IPPERVALMIGPEGGLSPEEIAHAEKEGFL-PVALGPRVLRTETAP 228 Query: 231 VAAMALVQAICGD 243 VAAMAL Q + GD Sbjct: 229 VAAMALCQWLWGD 241 >gi|229593101|ref|YP_002875220.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens SBW25] gi|229364967|emb|CAY53089.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 239 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 123/253 (48%), Gaps = 31/253 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F D PL + + Q HY++ VLRM EGD + LF+G E+L + VGK R Sbjct: 3 LSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGSLLEVGKK-R 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYT 117 V+ + S Q++ SP+ + R+D+ IQK+ E+G+ AI P+ + Sbjct: 61 VTVQL-TESVAGQAE-----SPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRC 114 Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171 + + R ISA EQC T+P I+PP L LK + + ++V Sbjct: 115 EVRLKDERADKRLLHWRQVAISACEQCGRSTVPLIHPPLLLADWLKQTEADLKLVL---- 170 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E + + A ++A LIGPEGG E + + LGPR+LR++TA V Sbjct: 171 ---HPVAEPMVSHAKPSSLAFLIGPEGGLTDAEVQAAQGAGYHAA-RLGPRVLRTETAPV 226 Query: 232 AAMALVQAICGDW 244 A+A+ Q + GD+ Sbjct: 227 VALAVAQQLWGDF 239 >gi|229586410|ref|YP_002844911.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia africae ESF-5] gi|228021460|gb|ACP53168.1| Unknown [Rickettsia africae ESF-5] Length = 246 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 5 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 65 VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ + Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|34580836|ref|ZP_00142316.1| hypothetical protein [Rickettsia sibirica 246] gi|28262221|gb|EAA25725.1| unknown [Rickettsia sibirica 246] Length = 244 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 5 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 65 VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ + Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|89091936|ref|ZP_01164891.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92] gi|89083671|gb|EAR62888.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92] Length = 242 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R + PL K++ + S + +++ LRMK GD ++LFNG E+L+++S V K Sbjct: 3 IPRFYDPQPLSEKSEIQLSDEVVQHVSRALRMKVGDQLILFNGNGVEYLAELSQVEKRKA 62 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 S QS S+T + V S + R+DY +QKS EMG+ I P+ + Sbjct: 63 SAHIVETIQSNSETPLT-VHIGQSLSRGERMDYAVQKSTEMGVHQITPLFSERCEVKLPE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++ + ISA EQ + P I P L+ L D ++V SE Sbjct: 122 ERQAKRINHWQQIAISACEQSGRVNPPLIAKPENLKSWLAQQDAELKLVLHHH---SEMP 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+++ + +VA+LIGPEGG +E E F PL+LGPR++R++TA VAA+ L+ Sbjct: 179 LQEMKPPS---SVALLIGPEGGLTEDEVELAQEFGF-KPLTLGPRVMRTETAPVAALTLL 234 Query: 238 QAICGD 243 + GD Sbjct: 235 NYLWGD 240 >gi|229301334|ref|NP_359847.2| hypothetical protein RC0210 [Rickettsia conorii str. Malish 7] gi|39932538|sp|Q92J59|RSME_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase Length = 244 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 5 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 65 VRLKEQLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ + Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|157803384|ref|YP_001491933.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia canadensis str. McKiel] gi|157784647|gb|ABV73148.1| hypothetical protein A1E_01000 [Rickettsia canadensis str. McKiel] Length = 257 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 122/218 (55%), Gaps = 3/218 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R++++ L ++ + + D HY+ VLR+K D + +FNG DGE+L++I+ +GK+ + Sbjct: 5 RIYINSHLAENSKLELANDHIHYIKTVLRLKVNDGLRIFNGTDGEFLAQITDIGKNNLSV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 K++ Q + +S + + IK ++L I + ++G+ I P+IT+ Q N+ R+ Sbjct: 65 KLKEQLKKPDTESALTLAVAIIKQDKLMLTINMATQLGITKIIPLITKRCQFRSVNIKRL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + L P I L+ LK +N +++A+E ENS+ ++ ++ + Sbjct: 125 TKCMIEATEQSERLIPPIIEQAIKLQDYLK--KNNNLMLYANEYEKEENSILQITSLLNN 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I+IGPEGG+ +E + L S +SLG ILR Sbjct: 183 SDIDIVIGPEGGFTIDELQLLASYKNTKSISLGSNILR 220 >gi|15619261|gb|AAL02748.1| unknown [Rickettsia conorii str. Malish 7] Length = 257 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFNG DGE+L++I+ +GK+ + Sbjct: 18 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 77 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 78 VRLKEQLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 137 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQ + LT P I T++ LK +N +++A+E ENS+ ++ + Sbjct: 138 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 195 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 196 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234 >gi|26991662|ref|NP_747087.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida KT2440] gi|24986759|gb|AAN70551.1|AE016697_6 conserved hypothetical protein TIGR00046 [Pseudomonas putida KT2440] gi|313500961|gb|ADR62327.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 239 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R F+D PL + Q HY+ VLRM GD + LF+G E+ ++ VG K++ Sbjct: 3 LSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q ++ + + R+D+ IQK+ E+G I P+++ + Sbjct: 62 RVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC TLP I+PP TL L + + ++V Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + +A +IGPEGG E E + F LGPR+LR++TA V A+++ Q Sbjct: 175 EPLISHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHA-ARLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|189184337|ref|YP_001938122.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda] gi|189181108|dbj|BAG40888.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda] Length = 263 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 24/246 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R++ PL K S +Q +Y+ +VLR K D I +FN +GE+L+ I + K + Sbjct: 6 LHRIYSSIPLSKAGTIKLSREQTNYIINVLRCKNNDKIRVFNELNGEYLAIIHHTNNKQV 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP-------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 ++ Q++ K+ D SP IK R+ +I + + G+ I P+I+ Y+Q Sbjct: 66 LLQIINQTKVVEKEVDENN--SPLVLAQCIIKPERMARVIDMATQAGITNIVPIISEYSQ 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +N+++ I + Q + LT+P + P TL L + C I+ A+E Sbjct: 124 HLKFNIEKYNKIIIESCRQSERLTMPILSSPVTLSHFLSQSNSGC-ILCANEQ------- 175 Query: 179 EKLHAIAHIP-----NVAILIGPEGGYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVA 232 E++ I HIP +ILIGPEGG+ +++ L + +S+G +LRS+TAA+ Sbjct: 176 ERIQQIHHIPASILSKASILIGPEGGFSEQDQSILRKAGGLIKSISIGRNVLRSETAAIY 235 Query: 233 AMALVQ 238 ++ +Q Sbjct: 236 LLSQLQ 241 >gi|170719665|ref|YP_001747353.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619] gi|169757668|gb|ACA70984.1| protein of unknown function DUF558 [Pseudomonas putida W619] Length = 239 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 L R F+D PL + Q HY+ VLRM GD + LF+G E+L ++ VG K+ Sbjct: 2 RLSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 +R ++ Q + ++ + + R+D+ IQK+ E+G I P+++ Sbjct: 61 VRVSLDQAVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC LP I P TL +K D + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSILPIIRAPVTLGDWIKGSDADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + +A LIGPEGG E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPARLAFLIGPEGGLSEAEVDQAKGAGF-QAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|148284290|ref|YP_001248380.1| hypothetical protein OTBS_0493 [Orientia tsutsugamushi str. Boryong] gi|146739729|emb|CAM79559.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 250 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R++ PL K S +Q +Y+ +VLR K D I +FN +GE+L+ I + K + Sbjct: 6 LHRIYSSIPLSKAGTIKLSREQANYIINVLRCKNNDQIRVFNELNGEYLAIIHHNNNKEV 65 Query: 66 RFKVEYQSRSQTKQSDVQ---YIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 ++ Q++ K+ D + + IK R+ +I + ++G+ I P+I+ Y+Q+ Sbjct: 66 LLQIINQTKVVAKEVDANNSHLVLAQCIIKPERMARVIDMATQVGITNIVPIISEYSQHL 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +N ++ I + Q + LT+P + P TL L + C I+ A+E EK Sbjct: 126 KFNTEKYNKIIIESCRQSERLTIPILSSPVTLLHFLSQSNSEC-ILCANEQ-------EK 177 Query: 181 LHAIAHIP-----NVAILIGPEGGYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAM 234 + I HIP +ILIGPEGG+ +++ L + +S+G +LRS+TAA+ + Sbjct: 178 IQQIHHIPASILSKASILIGPEGGFSEQDQSILRKAGRLIKSISIGRNVLRSETAAIYLL 237 Query: 235 ALVQ 238 + +Q Sbjct: 238 SQLQ 241 >gi|237749444|ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380806|gb|EEO30897.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 242 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RLF DFPL + T + ++ VLR+ EG+ I+LFNG+ GE+ ++I + ++ + Sbjct: 1 MTRLFCDFPLVVGTNIDLPKETSRHI-QVLRLTEGNEIVLFNGEGGEYSARIISLDRT-K 58 Query: 67 FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V+ SR + D+ + + ++D++I+K+VE+G I+P V+ Sbjct: 59 TNVKILSRHDREVELPYDITLAQALPEAGKMDWIIEKAVELGAAGIQPLAAQRSVVRLNA 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R +T +A+EQC TL I P + N +++F + + Sbjct: 119 DRAEKRLARWQTIVTAASEQCGRNTLMEISEPVAFNTFIDNSGGCLRVMFTPRATETLSG 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + A I I+IGPEGG+ EE+E L V PLS+G RILR++TA +AA++ + Sbjct: 179 WARKQAPQAI---TIMIGPEGGFSPEEEE-LAIQNGVIPLSMGSRILRTETAGMAAISAI 234 Query: 238 QAI 240 AI Sbjct: 235 NAI 237 >gi|77461509|ref|YP_351016.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens Pf0-1] gi|77385512|gb|ABA77025.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R F+D PL + Q HY++ VLRM EGD + LF+G E+ + VGK + Sbjct: 3 LSRFFIDAPLSTGEH-ELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKKRV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +++ Q Q + ++ + + R+D+ IQK+ E+G+ I P+ + + Sbjct: 62 VVQIDEQFAGQVESPLKIHLGQGLSRGERMDWAIQKATELGVTEITPIFSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC +P I+PP L LK + ++V Sbjct: 122 RADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + A +A LIGPEGG E E + F LGPR+LR++TA V A+A+ Q Sbjct: 175 EPLVSHAKPSTLAFLIGPEGGLSDAEVEQAKAGGF-HAARLGPRVLRTETAPVVALAVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|148550061|ref|YP_001270163.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1] gi|148514119|gb|ABQ80979.1| protein of unknown function DUF558 [Pseudomonas putida F1] Length = 239 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R F+D PL + Q HY+ VLRM GD + LF+G E+ ++ VG K++ Sbjct: 3 LSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q ++ + + R+D+ IQK+ E+G I P+++ + Sbjct: 62 RVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC TLP I+PP L L + + ++V Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLAEWLSSTKADLKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + +A +IGPEGG E E + F LGPR+LR++TA V A+++ Q Sbjct: 175 EPLTSHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHA-ARLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|325983172|ref|YP_004295574.1| ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp. AL212] gi|325532691|gb|ADZ27412.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp. AL212] Length = 248 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 11/230 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQSDV 82 S + H+ VLR+K G+ I +FNG GE+ + I + KS + Y + + Sbjct: 20 SAENKHHATRVLRLKNGNPITIFNGLGGEFSAHIEAISKSSATVLIDAYHHTDRESPLSI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + ++D++IQKSVE+G+ I+PV T + + ++ + + ISA E Sbjct: 80 ELAQAICINEKMDWIIQKSVELGITRIQPVFTARSIVHLSDERSYKRLQHWKKIIISACE 139 Query: 137 QCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 QC LP + P L L K H V + + N L+ + A N+ ++I Sbjct: 140 QCGRNCLPQVLPLIPLAEWLSQKKTSHCANDVHLMLSTRTTNGLKNISKPAADANITLVI 199 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG+ +EE+ + F+ PL LG RILR+++AA+A +A +QA+ GD+ Sbjct: 200 GPEGGFTAEEETAISYSGFI-PLRLGKRILRTESAALATIAAMQALWGDY 248 >gi|83644376|ref|YP_432811.1| 16S ribosomal RNA methyltransferase RsmE [Hahella chejuensis KCTC 2396] gi|83632419|gb|ABC28386.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 247 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 17/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R+F+D PL +Q +GDQ +Y+ VLRM+ GD LF+G ++ K+ VG+ Sbjct: 5 RIFIDQPLDGLSQLTLTGDQANYVGRVLRMRPGDAFHLFSGDGRDFPVKVLAVGRRDVEV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + +S ++ + + R+DY +QKS EMG+ A+ P+++ + + +R Sbjct: 65 ALSEPLAIEAESPLRVHLGQVLSRGERMDYAVQKSTEMGVTALTPLLSERCE-VRLDGER 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R +ISA EQC +P I T LE L++ + +++ G + Sbjct: 124 QDKRWRHWRQVSISACEQCGRARVPDIGDVTPLESWLQSATADLKLILHP---GDARAWS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A +V +LIGPEGG+ EE FV LGPRILR++TA VAA+AL+Q Sbjct: 181 PAQPPA---SVCLLIGPEGGFTDEEVALAERHGFVH-APLGPRILRTETAPVAALALMQW 236 Query: 240 ICGD 243 + GD Sbjct: 237 LWGD 240 >gi|330812331|ref|YP_004356793.1| RNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380439|gb|AEA71789.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 239 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R F+D PL + + + HY+ VLRM EGD + +F+G E+ ++ VGK + Sbjct: 3 LSRFFIDAPLSLGDH-ELPEAKAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 R +++ Q Q + ++ + + R+D+ IQK+ E+G+ I P+ + + Sbjct: 62 RVQLDEQFAGQPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R ISA EQC ++P I+PP L LK + ++V Sbjct: 122 RADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAELRLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + +A LIGPEGG E E + + LGPR+LR++TA V A+A+ Q Sbjct: 175 EPLVSHDKPSTLAFLIGPEGGLSDAEVEQAKTAGYHA-ARLGPRVLRTETAPVVALAVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|146284257|ref|YP_001174410.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri A1501] gi|145572462|gb|ABP81568.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 238 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 20/248 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F+D PL + HY+ VLR+ G + LF+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLSLGQHALPEASA-HYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKS 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 Y+ + +S ++ + R+D+ IQK+ E+G+ I P+I+ + N Sbjct: 61 VSVELYERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCE-VRLN 119 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R R ISA EQC LP I+ P TL ++W V AD Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTL----RDWLD----VEADLKLVLHP 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + A ++A LIGPEGG E E F+ P LGPR+LR++TA V A+++ Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDSEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 231 AQQLWGDF 238 >gi|330501385|ref|YP_004378254.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] gi|328915671|gb|AEB56502.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] Length = 239 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 119/259 (45%), Gaps = 45/259 (17%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F+D PL + Q + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 3 LSRFFIDAPLSL-GQHELPEAQAHYIGRVLRHAVGDAVQLFDGSGQEYLGELIEVGKK-- 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTN---------RLDYMIQKSVEMGMGAIRPVITRYT 117 R + ++S SP++ + R+D+ IQK+ E+G I P+++ Sbjct: 60 -----SVRVELRESIAGLAESPLRIHLGQGLSRGERMDWAIQKATELGASEITPIVSTRC 114 Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171 + M R ISA EQC LP I+ P L+ L+ + + ++V Sbjct: 115 EVRLKDERADKRMAHWRQVAISACEQCGRSVLPLIHAPLELDAWLQQIEADLKLV----- 169 Query: 172 CGSENSLEKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 LH +A H P +A LIGPEGG E + F LGPR+L Sbjct: 170 ---------LHPVAEPWVGHAPPRALAFLIGPEGGLSDAEVDQAKGAGFHAA-RLGPRVL 219 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA V A+++ Q + GD Sbjct: 220 RTETAPVVALSVAQQLWGD 238 >gi|226942481|ref|YP_002797554.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii DJ] gi|226717408|gb|ACO76579.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 239 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 L R F+D PL + Q HY+ VLR+ GD + LF+G E+ ++ VG KS Sbjct: 2 RLSRFFIDAPLALGLLDLPEA-QAHYIGRVLRLAPGDAVQLFDGSGREFRGELVEVGKKS 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q + ++ + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ISA EQC LP I+PP LE LK + ++V Sbjct: 121 ERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVL-------HPF 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG SE + LGPR+LR++TA V A+++ Sbjct: 174 AEPLASHARPASLAFLIGPEGGL-SETEVDAARRAGYRAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|92112185|ref|YP_572113.1| hypothetical protein Csal_0049 [Chromohalobacter salexigens DSM 3043] gi|91795275|gb|ABE57414.1| 16S rRNA m(3)U-1498 methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 242 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++A LR++EG + LF+G+ E ++I VG+ +R ++ + + ++ I Sbjct: 27 HVAGALRLREGAALRLFDGEGHEADAEIVAVGRREVRVRITAVTEGGAESPLAVHLGQAI 86 Query: 90 -KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 K +R+DY IQK+ E+G+ AI P+ T + + + + +SA EQC Sbjct: 87 SKGDRMDYAIQKATELGVAAITPLYTEHGDVRLKGEREAKKLAHWQAVAVSACEQCGRSR 146 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P ++PP TL+ L D ++V T + HA + + VA+L+GPEGG Sbjct: 147 VPTVHPPQTLDAWLARRDETLRLVLHPSTDTTWR-----HA-SDVARVALLVGPEGGLSP 200 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E +T + F L+LGPRILR++TA V A+ L+Q GD Sbjct: 201 NEIDTARAADFAA-LTLGPRILRTETAPVVALTLLQYHFGD 240 >gi|327482639|gb|AEA85949.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM 4166] Length = 238 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 22/248 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F+D PL + HY+ VLR+ G + LF+G E+ ++ VGK Sbjct: 3 LSRFFIDAPLSLGQHALPEAS-AHYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKK-S 60 Query: 67 FKVEYQSR-SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 VE R + +S ++ + R+D+ IQK+ E+G+ I P+I+ + N Sbjct: 61 VSVELHERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCE-VRLN 119 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R R ISA EQC LP I+ P TL ++W V AD Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTL----RDWLD----VEADLKLVLHP 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + A ++A LIGPEGG E E F+ P LGPR+LR++TA V A+++ Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDNEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 231 AQQLWGDF 238 >gi|146305452|ref|YP_001185917.1| hypothetical protein Pmen_0412 [Pseudomonas mendocina ymp] gi|145573653|gb|ABP83185.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas mendocina ymp] Length = 241 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 19/246 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L R F+D PL + Q Q HY+ VLR GD + LF+G E+L ++ VG KS+ Sbjct: 3 LSRFFIDAPLSL-GQHDLPEAQAHYIGRVLRHAVGDALQLFDGSGQEYLGELIEVGKKSV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ ++ ++ + + R+D+ IQK+ E+G I P+++ + Sbjct: 62 RVELREAIAGMSESPLRIHLGQGLSRGERMDWAIQKATELGAAEITPIVSARCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 M R ISA EQC LP I PP L L+ + + ++V S Sbjct: 122 RADKRMAHWRQVAISACEQCGRSVLPLINPPLELAAWLQQIEADLKLVL-HPVAAPLQSH 180 Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +K PN +A L+GPEGG E + + F LGPR+LR++TA V A+++ Sbjct: 181 DK-------PNSLAFLVGPEGGLSEAEVDQTKAAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGD 243 Q + GD Sbjct: 233 QQLWGD 238 >gi|297170744|gb|ADI21766.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0130_22O14] Length = 246 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 25/251 (9%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R VD K+ + +G+Q HY+ VLR++ GD ++LF+G EW +KI ++ Sbjct: 5 RIQRFHVDQIDNSKSHLEIAGEQSHYVTRVLRLQTGDRMILFDGSGSEWTAKIIDTKRN- 63 Query: 66 RFKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120 R +E + R+ + ++ I S ++ R+D ++QKS E+G+ I PV ++ NT Sbjct: 64 RLLLELEERATPDRESPINLTLIQSISRSQRMDLVMQKSTELGVTRIVPV---FSTNTIV 120 Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEF-LLKNWDHNCQIVFADETC 172 N D++ R ISA+EQ +P + P LE LK + + I + +T Sbjct: 121 KMNEDKIEKKINHWRNILISASEQSGRTKIPDLISPIQLETECLKRYKSDLSIFY--DTT 178 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G ++ + + ++ +IGPEGG+ +EK+ ++ + GPR+LR++TA + Sbjct: 179 GKDS-----YDANNPKDITAVIGPEGGFTEDEKQIAIDAGYMV-MQSGPRLLRTETAPIM 232 Query: 233 AMALVQAICGD 243 A++++Q + GD Sbjct: 233 ALSILQYLYGD 243 >gi|325295443|ref|YP_004281957.1| ribosomal RNA small subunit methyltransferase E [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065891|gb|ADY73898.1| Ribosomal RNA small subunit methyltransferase E [Desulfurobacterium thermolithotrophum DSM 11699] Length = 241 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 16/227 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV--EYQSRSQTKQSDV 82 G + + VLR+++GD I++F+G+ E+L++I S+R KV E + Sbjct: 18 GQEARHALKVLRLRKGDEIIIFDGEGREYLAEIEAASPTSVRLKVLEEININRDSHLKTT 77 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY------NMDRVRTYTISAAE 136 Y+ K + + IQK+ E+G+ I PV+ + + N + R ++AA+ Sbjct: 78 LYMGLTNKLQKFELAIQKATELGVTEIIPVVCKRSSNAQNIKNWDNKLRRWEEIVVNAAK 137 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC LP ++ P L + ++N ++F G + SL+ + + +V++++GP Sbjct: 138 QCGRNILPIVHSPVKLPEI----ENNSDLLFVLWEKGGK-SLKDYESFSA-SSVSLIVGP 191 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG+ EE E L F P+ LG RILR++TAA+A M LVQ + GD Sbjct: 192 EGGFDKEEIEILKEKGF-KPIYLGKRILRAETAAIAGMTLVQFLWGD 237 >gi|91205956|ref|YP_538311.1| hypothetical protein RBE_1141 [Rickettsia bellii RML369-C] gi|157826683|ref|YP_001495747.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia bellii OSU 85-389] gi|91069500|gb|ABE05222.1| unknown [Rickettsia bellii RML369-C] gi|157801987|gb|ABV78710.1| hypothetical protein A1I_01600 [Rickettsia bellii OSU 85-389] Length = 234 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R++++ L + + D HY+ VLR+K D +FNG DGE+L++I+ + ++ + Sbjct: 5 RIYINNHLAENIKLELGSDHTHYIKTVLRLKVNDQFRIFNGTDGEFLAQITKLDRNNLII 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ R +S + S IK ++L I + ++G+ I +IT Q N++R+ Sbjct: 65 TIQECLRKPRAESSLTLAMSIIKQDKLMLAINMATQLGVTKIVTLITERCQFRSVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I A EQ + L P I P +++ LK +N +++A+E ENS+ KL+ I Sbjct: 125 TKCVIEATEQSERLNPPVIEPAISIQNYLK--KNNNFVLYANEHEKEENSILKLNK--DI 180 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 N++I+IGPEGG+ ++E L S +SLG ILR Sbjct: 181 TNISIVIGPEGGFTNDEIALLASYKNAYSISLGKNILR 218 >gi|330964692|gb|EGH64952.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 239 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK + Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q + ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVQLNKCFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ISA EQC +P I+PP TL +K + + ++V Sbjct: 122 RAEKRQAHWQQIAISACEQCGRSVVPVIHPPMTLADWIKLTEADLKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Q Sbjct: 175 EPLTSHAKPVSLAFLIGPEGGLNDAEVDQAQTAGFHAA-RLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|213971885|ref|ZP_03399986.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] gi|301385288|ref|ZP_07233706.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato Max13] gi|302061292|ref|ZP_07252833.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato K40] gi|302131396|ref|ZP_07257386.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923369|gb|EEB56963.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] Length = 239 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +V+ R Q + ++ + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|158521743|ref|YP_001529613.1| hypothetical protein Dole_1732 [Desulfococcus oleovorans Hxd3] gi|158510569|gb|ABW67536.1| protein of unknown function DUF558 [Desulfococcus oleovorans Hxd3] Length = 245 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 15/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D +G +++ +VLRMK GD I LFNG E+ I V S Sbjct: 1 MRRFFIDAAAAAGAICPITGPDANHIKNVLRMKPGDAIWLFNGAGMEFKGVIHSV-DSEA 59 Query: 67 FKVEYQSR-SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 VE S +S ++ + +K ++D +++++ E+G+ PV T+ T Sbjct: 60 VTVEITGAFSCATESPIRLTLAQAFLKDKKMDALVRQATELGVTRWIPVFTQRTIPRPDA 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETC-GSE 175 + M+R + + +QC LP I PP E LL ++ D + +I+FAD G Sbjct: 120 RRVSSRMERWQAIAAESLKQCGRGRLPEIEPPILFEDLLSRSDDWSLKIIFADAKAPGLN 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++L A V ++IGPEGG+ EE + F+ SLGPRIL++DTA V A A Sbjct: 180 DTLPSQEATVR--RVLVMIGPEGGFTPEEIDRAIKKGFIA-ASLGPRILKADTATVGACA 236 Query: 236 LVQAICGD 243 +VQ + GD Sbjct: 237 IVQHLLGD 244 >gi|28872189|ref|NP_794808.1| hypothetical protein PSPTO_5076 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855443|gb|AAO58503.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato str. DC3000] Length = 239 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFSGTLLEVGKK-R 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +V+ R Q + ++ + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|330878069|gb|EGH12218.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 239 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK + Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q + ++ + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 62 RVQLTECFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ISA EQC +P I+PP L +K D + ++V Sbjct: 122 RAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTDADLKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + A ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Q Sbjct: 175 EPLTSHARPASLAFLIGPEGGLNDAEVHQAQTAGFHAA-RLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|238651023|ref|YP_002916879.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str. Rustic] gi|238625121|gb|ACR47827.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str. Rustic] Length = 244 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 125/220 (56%), Gaps = 6/220 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R++++ L ++ + + D + HY+ VLR+K D + LFN DGE+L++I+ +GK+ + Sbjct: 5 RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNSTDGEFLAQINDIGKNNLS 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q N++R Sbjct: 65 VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 + I A EQ + LT P I T++ +L KN + +++A+E ENS+ ++ + Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLKKNKN---LMLYANEHEKEENSILRISSSL 181 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ I++GPEGG+ ++E E L S + LG ILR Sbjct: 182 SNSDITIIVGPEGGFTNDELELLASYKNTKSIILGSNILR 221 >gi|330957011|gb|EGH57271.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 239 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK + Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKRV 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ Q + ++ + + R+D+ IQK+ E+G+ I P+I+ + Sbjct: 62 RVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIISERCEVRLKDE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ISA EQC +P I+PP L ++ + + ++V Sbjct: 122 RAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIRLTEADLKLVL-------HPVA 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Q Sbjct: 175 EPLTSHAKPASLAFLIGPEGGLNEAEVDQAQTAGFHAA-RLGPRVLRTETAPVVALSVAQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 QLWGDF 239 >gi|289209554|ref|YP_003461620.1| hypothetical protein TK90_2394 [Thioalkalivibrio sp. K90mix] gi|288945185|gb|ADC72884.1| protein of unknown function DUF558 [Thioalkalivibrio sp. K90mix] Length = 255 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 L D L AS D+ HY +VLR+K +F+G+ E+ +++ G+ S F Sbjct: 7 LINDTDLAAGQSIPASQDRLHYATNVLRLKNDAACRVFDGQGNEFHARLEVTGRRSGTFH 66 Query: 69 VEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMD 125 + ++ + T + ++ + + + +D +QK+VE+G+ IRPV+ +++ H +D Sbjct: 67 LGDRAAAPTTPARPIELLQGIARGDHMDLAVQKAVELGISVIRPVLCERSRSAAAHRGLD 126 Query: 126 RVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + + +AAEQC LP + PP TL+ L +V ++ +L+ Sbjct: 127 KRQAHWAGIIQAAAEQCGRNELPLLVPPATLDEALDASSPGLDLVADEQGPPLSGALDSF 186 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 V ILIGPEGG EE+ + F +++GPR LR++TAA++ + LVQ Sbjct: 187 GKGGTSGRVRILIGPEGGLTDEERIQARNAGFQA-VAMGPRTLRTETAAISLLTLVQWRL 245 Query: 242 GD 243 GD Sbjct: 246 GD 247 >gi|166712896|ref|ZP_02244103.1| hypothetical protein Xoryp_15990 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 244 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 16/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + S + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCEQEVALSEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEH 178 Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L + IP ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 179 RLGTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIA 235 Query: 236 LVQAICGD 243 +Q+ GD Sbjct: 236 ALQSRFGD 243 >gi|239948513|ref|ZP_04700266.1| ribosomal RNA small subunit methyltransferase E [Rickettsia endosymbiont of Ixodes scapularis] gi|239922789|gb|EER22813.1| ribosomal RNA small subunit methyltransferase E [Rickettsia endosymbiont of Ixodes scapularis] Length = 298 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 141/283 (49%), Gaps = 51/283 (18%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++++ L ++ + +GD HY+ VLR+K D + +FNG DGE+L++I+ +GK ++ Sbjct: 5 RIYINSRLAENSKLELAGDHVHYVKTVLRLKVNDGLRIFNGMDGEFLAQITDIGKHNLSV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ Q + +S + S IK ++L I + ++G+ I P+ITR Q N++R+ Sbjct: 65 RLKEQLKKPYTESTLILAISIIKQDKLMLAINMATQLGITKIIPLITRRCQFRSVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-LEKLHAIAH 186 I A EQ + LT P I T++ LK +N +++A+E ENS L L ++++ Sbjct: 125 TKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRILSSLSN 182 Query: 187 I-----------------------------------------------PNVAILIGPEGG 199 I ++ I++GPEGG Sbjct: 183 IYSCEMKRGYTKNNLEKSKESVSRGAERILIREHLRTYKDDVANFSSSSSITIIVGPEGG 242 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + ++E E L S +SLG ILR++TAA+ A+A V+ CG Sbjct: 243 FTNDELELLASYKNTKSISLGSNILRAETAAITAIAQVRLWCG 285 >gi|88608373|ref|YP_505938.1| hypothetical protein NSE_0036 [Neorickettsia sennetsu str. Miyayama] gi|88600542|gb|ABD46010.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 227 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 120/217 (55%), Gaps = 26/217 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQS--DVQYIF 86 HYL V+R+++ +++FNG+ GEW++K+++ F V + Q R QT D+ F Sbjct: 22 HYLFSVMRLQKEGQVIVFNGRSGEWIAKVNH-----NFLVPDIQIRPQTASYPYDINLCF 76 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + K L +++++ E+ + +RP+ + T+N + +++++ + I AA+QC +++P + Sbjct: 77 AVPKHKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQCRRMSIPVL 136 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA---ILIGPEGGYHSE 203 PP L+ ++ + N + DET I IP ++ I+IGPEGG+ E Sbjct: 137 LPPIALKE-VETYHEN--VFICDETLSDS-------VICDIPILSSYTIVIGPEGGFSHE 186 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E ++ +SLG ILR TAA +A+A V+++ Sbjct: 187 ELSLINKR-----ISLGRTILRCSTAATSAIAQVRSV 218 >gi|331007217|ref|ZP_08330426.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC1989] gi|330418984|gb|EGG93441.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC1989] Length = 257 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 47/271 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-----GKDGEWLSKISY 60 H+ R+++ PL TQ + H+L V+RMK G ++LFN G+ GE+ + ++ Sbjct: 2 HIPRIYIPLPLSEHTQIELDKASMHHLVTVMRMKVGRQVILFNNVPIDGRYGEFTATLAS 61 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSP---------IKTNRLDYMIQKSVEMGMGAIRP 111 V K Q+R + I SP IK +R+D+++QK+ E+G+ I P Sbjct: 62 VDKK-------QARVDIGEFVSPQIESPLQVHLGACLIKNDRMDWLLQKATELGVSEITP 114 Query: 112 VITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE------------ 153 + ++YT + M R I+A EQ + LP ++ P LE Sbjct: 115 LFSQYTDVKLPAERIEKKMGHWRKIVINACEQSGRVRLPVLHTPLALEKWVASSTHVRQK 174 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 F+L + + AD E+SL + I +A+L+GPEGG +E + F Sbjct: 175 FVLHPYASSSPHTSADRP--QESSLS-----SDINAIALLVGPEGGLTEDEVDLAVQSQF 227 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + LGPRILR++TA + A+A++ GD+ Sbjct: 228 -KGMRLGPRILRAETAPLVALAVLSQQLGDF 257 >gi|307824730|ref|ZP_07654953.1| protein of unknown function DUF558 [Methylobacter tundripaludum SV96] gi|307734088|gb|EFO04942.1| protein of unknown function DUF558 [Methylobacter tundripaludum SV96] Length = 253 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 25/252 (9%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + RL+ PL + D HY+ VLR+K+ +I+LFNG GE+L ++ V K+ Sbjct: 2 RVSRLYTSAPLATGKLIELDDDNGHYVRTVLRLKKDAHIILFNGHGGEYLCTVAEVSRKA 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 + V ++ RS + + +R+D +QK+VE+G+ I P++T Sbjct: 62 VLIDVGQWSDRSVESPLQITLGLGISRGDRMDLTVQKAVELGVNHITPLLTERCVVQFKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFAD---ETC 172 + + + AAEQ +LP P +E L+NW N Q VF D ET Sbjct: 122 EKKPQRLLHWQKIVQHAAEQSGRTSLP---PLLEVE-QLQNWLGNQQGLKVFLDPYAETT 177 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 SE E + V +L GPEGG+ ++E++ + F+ P+ LG RILR++TA++A Sbjct: 178 LSELKPETM-------KVTLLTGPEGGFSNQERDAAKASGFI-PVRLGSRILRTETASLA 229 Query: 233 AMALVQAICGDW 244 A+A VQ + GD+ Sbjct: 230 ALAAVQMLWGDF 241 >gi|53802677|ref|YP_112559.1| hypothetical protein MCA0018 [Methylococcus capsulatus str. Bath] gi|53756438|gb|AAU90729.1| conserved hypothetical protein TIGR00046 [Methylococcus capsulatus str. Bath] Length = 243 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + RL++ PL G++ HYL VLR+K G ++ +FNG+ GE+ ++I + Sbjct: 2 RISRLYLPVPLASGADVVLDGERAHYLRTVLRLKRGFDLTVFNGEGGEFAARIGVCHREA 61 Query: 66 RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 R ++S DV+ + R+D IQK+VE+G+GAI P+ T Sbjct: 62 VSLTVGAHRPDDRESRLDVRLGLGISRGERMDLAIQKAVELGVGAITPLFTERCVVQLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++ R +A EQ +P + P +LE L C ++ Sbjct: 122 ERKAQRLEHWRRVVWAACEQSGRNRVPEVLEPRSLEAWLPE-------AAGLRICLDPHA 174 Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L +A + +V +L GPEGG+ E++ + FV P+ LGPR+LR++TAA+AA+A Sbjct: 175 VHGLRELAPPVGSVTLLSGPEGGFSDAERDMAVAAAFV-PIRLGPRVLRTETAALAALAA 233 Query: 237 VQAICGD 243 +Q + GD Sbjct: 234 IQTLWGD 240 >gi|56461316|ref|YP_156597.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina loihiensis L2TR] gi|56180326|gb|AAV83048.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR] Length = 243 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + ++ + + S D + +L VLR+ GD+I+LFNG + +KI+ V K Sbjct: 2 RVPRIYHPASISLQNETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 V S++ +S V + + + +R+D+++QKSVE+G+ I P+ + + Sbjct: 62 AQFVATSSQANASESPVNIHLAQVVSRGDRMDFVLQKSVELGVTEITPLFSERC-GVKLS 120 Query: 124 MDRVRTYTI-------SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 DR+ + SA EQC +P + P L + + ++ + Sbjct: 121 GDRLEKKQLQWQKIVHSACEQCGRSVVPQVKPAQQLTDFIASSFEGLRLTLDPTATQPLS 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S ++ + +LIGPEGG+ E L F P+ LGPRILR++TAA++A+ Sbjct: 181 SFQQAEK-----GIQLLIGPEGGFTDTEVSAAGQLGF-KPMRLGPRILRTETAALSALTA 234 Query: 237 VQAICGD 243 VQ GD Sbjct: 235 VQYQFGD 241 >gi|71898620|ref|ZP_00680790.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] gi|71731567|gb|EAO33628.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] Length = 244 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 20/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 I E + S + VQ I + ++D ++QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAI---TRGEKMDLIVQKATELGVVAIVPVDTERS-GV 117 Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + +RV ISA EQC +P + P L+ L + D + + D Sbjct: 118 RLDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPCALQVLPEILDPDTLRLILDPK-- 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 SE+ L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A Sbjct: 176 SEHRLSTLSRLTPV-EVTIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233 Query: 234 MALVQAICGD 243 +A++QA GD Sbjct: 234 IAVLQAQLGD 243 >gi|302389476|ref|YP_003825297.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM 16646] gi|302200104|gb|ADL07674.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM 16646] Length = 256 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 19/233 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSD 81 SG+ H++A VLRM +GD + L NG D +I + + I+ KV +++ + ++ Sbjct: 19 SGEDAHHIARVLRMGKGDLLSLSNGLDALGTGQILELFPEDRKIKVKVIEKNKFEPRRPR 78 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 + S K + D ++QK+ E+G+ PVIT T ++ +R R T AA Sbjct: 79 ITLFQSVPKGQKFDLILQKNTELGVSEFVPVITERTVVEIEGESKSKKAERWRKITKEAA 138 Query: 136 EQCDILTLPFIYPPTTLEF---LLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNV 190 +QC LP + P + + LLKN+ +IV E L+ + + +P++ Sbjct: 139 KQCRRPDLPVVREPVSFDGCLELLKNY----RIVLVPWEGEREVFLKSILSNVPPDVPDI 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A+LIGPEGG+ +E E VT +SLGPRILR++TA A++ GD Sbjct: 195 AVLIGPEGGFSVQEIERARKSGAVT-VSLGPRILRTETAGFVVTAVLMYELGD 246 >gi|325914126|ref|ZP_08176479.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937] gi|325539629|gb|EGD11272.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937] Length = 244 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 32/256 (12%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLRCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGK-- 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTN---------RLDYMIQKSVEMGMGAIRPVITRY 116 ++R+ +++D+ SP++ ++D ++QK+ E+G+ AI PV Sbjct: 60 -----REARALIERADMLSNESPLRITLLQGIARGEKMDLILQKATELGVTAIVPV---N 111 Query: 117 TQNTHYNMD------RV---RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 + T +D RV R +SA EQ +P + P L+ + D + + Sbjct: 112 AERTEVKLDAARMEKRVAHWRNVVVSACEQSGRARVPTVAAPLGLQEAAQTSDPQVRRLT 171 Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 D E+ L L A + + IGPEGG+ ++ TL F T L LGPRILR++ Sbjct: 172 LDPQ--GEHRLSTLRADVE-QGLIVAIGPEGGWSPRDRATLADAGF-TGLQLGPRILRTE 227 Query: 228 TAAVAAMALVQAICGD 243 TA +AA+A +QA GD Sbjct: 228 TAGLAAIAALQARFGD 243 >gi|197334623|ref|YP_002155192.1| protein YggJ [Vibrio fischeri MJ11] gi|197316113|gb|ACH65560.1| protein YggJ [Vibrio fischeri MJ11] Length = 243 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 30/246 (12%) Query: 15 PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 P + +QGK S D +++ V+RMKEG+++LLF+G E+ + I+ K +VE Sbjct: 9 PELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGAEFPAVITSASKK-SVEVEIT 67 Query: 73 SR-SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123 R ++ +S + + + +++++ IQKSVE+G+ I P+I+ + Sbjct: 68 ERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNVITPLISERCGVKLNKERFEKK 127 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKL 181 +D+ + I+A EQC T+P I P +LE W C A+E G + +L Sbjct: 128 LDQWQKIAIAACEQCGRNTIPEIRPIMSLE----EW---C----AEEYDGLKLNLHPRAK 176 Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++I +P NV +LIGPEGG S+E F L LGPR+LR++TAA+ A+ + Sbjct: 177 YSINTLPEPVTNVRLLIGPEGGLSSDEINMTEQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|237798149|ref|ZP_04586610.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021001|gb|EGI01058.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 239 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQVHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKK-R 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 +V+ R Q + ++ + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQMTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEIDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|289625569|ref|ZP_06458523.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647472|ref|ZP_06478815.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 2250] gi|298485033|ref|ZP_07003130.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160443|gb|EFI01467.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330865771|gb|EGH00480.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 239 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+G I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|28198087|ref|NP_778401.1| hypothetical protein PD0156 [Xylella fastidiosa Temecula1] gi|28056147|gb|AAO28050.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|307579179|gb|ADN63148.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa subsp. fastidiosa GB514] Length = 244 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 20/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 I E + S + VQ I + ++D ++QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAI---TRGEKMDLIVQKATELGVVAIVPVDTERS-GV 117 Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + +RV ISA EQC +P + P L+ L + D + + D Sbjct: 118 RLDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILDPK-- 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 SE+ L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A Sbjct: 176 SEHRLSTLSRLTPV-EVIIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233 Query: 234 MALVQAICGD 243 +A++QA GD Sbjct: 234 IAVLQAQLGD 243 >gi|307611825|emb|CBX01538.1| hypothetical protein LPW_32251 [Legionella pneumophila 130b] Length = 242 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79 S + ++ VLRM+ G+ + LFNG + E+ + I V K F +E S K Sbjct: 21 SPEAGQHVGVVLRMEPGEQLTLFNGDNKEFTASIEMVKKKQVFVRIASVLEVNRESPLKI 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 Q I K R++ ++QKS E+G+ I P+IT Q M + I Sbjct: 81 HLAQAIS---KGERMEMVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P + P L+ ++ + +++ + H P+VA++ Sbjct: 138 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPVQH-----PDVALI 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA GD Sbjct: 193 IGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAAGGD 241 >gi|192360419|ref|YP_001980593.1| hypothetical protein CJA_0070 [Cellvibrio japonicus Ueda107] gi|190686584|gb|ACE84262.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus Ueda107] Length = 241 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 120/246 (48%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ + L + + H+L+ VLRM+ G ++LFNG GE+ + I + K Sbjct: 3 IPRIYTNQTLLTGNKVQLEESASHHLSKVLRMQPGRELVLFNGAGGEFAATIDEISKRHV 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 ++S +Q + + R ++++QK+ E+G+ I P++T T+ Sbjct: 63 TASIAAHNPHNRESPLQLELAIGISRGERFEWVLQKATELGVTKITPLMTERTEVKVSGE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 M+R + ISA EQC LP + P + LK D + V + + Sbjct: 123 RQEKIMERWQHILISACEQCQRNLLPQLSAPVPITDWLKTVDAELRFVLHHRDSQTLPAD 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +K H+ A+LIGPEGG +E F L+LGPR+LR++TA +AA+++VQ Sbjct: 183 KKPHS------AALLIGPEGGLSDDEIALAKQQEFAA-LTLGPRVLRTETAPIAAISVVQ 235 Query: 239 AICGDW 244 + GD+ Sbjct: 236 YLWGDF 241 >gi|297544383|ref|YP_003676685.1| hypothetical protein Tmath_0939 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842158|gb|ADH60674.1| protein of unknown function DUF558 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 245 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 +++ FVD + G H++ +VLR+K+GD I++ +G E+ + I V K+ + Sbjct: 1 MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDG-STEYQTSIYGVEKNRV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 +E + +S T+ S +F + K+++++ +IQK E+G+ P+ITRY+ +N+ Sbjct: 60 ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119 Query: 121 HYN--MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + N ++R + A +Q +LP I P + E LK + + E + Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL-SLGPRILRSDTAAVAAMALV 237 E L + +I VAI IGPEGG+ EE + +L + L SLGPRILR++TAA++ ++V Sbjct: 180 EVLDGVKNIKKVAIFIGPEGGFSEEEVDL--ALRYSAKLVSLGPRILRTETAAISVCSIV 237 Query: 238 QAICGD 243 GD Sbjct: 238 MYELGD 243 >gi|58426003|gb|AAW75040.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 267 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 L R V PL + + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 26 LTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRDA 85 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 86 RALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDAA 145 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 T + R+ +SA EQ LP + P L+ + D + + D E+ L Sbjct: 146 RTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ--GEHRL 203 Query: 179 EKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + IP ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A + Sbjct: 204 GTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAAL 260 Query: 238 QAICGD 243 Q+ GD Sbjct: 261 QSRFGD 266 >gi|59711043|ref|YP_203819.1| hypothetical protein VF_0436 [Vibrio fischeri ES114] gi|59479144|gb|AAW84931.1| predicted protein [Vibrio fischeri ES114] Length = 243 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 30/246 (12%) Query: 15 PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 P + +QGK S D +++ V+RMKEG+++LLF+G E+ + I+ K +VE Sbjct: 9 PELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGSEFPAVITSASKK-SVEVEIT 67 Query: 73 SR-SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123 R ++ +S + + + +++++ IQKSVE+G+ I P+I+ + Sbjct: 68 ERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNKERFEKK 127 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKL 181 +D+ + I+A EQC T+P I P +LE W C A+E G + +L Sbjct: 128 LDQWQKIAIAACEQCGRNTVPEIRPIMSLE----EW---C----AEEYDGLKLNLHPRAK 176 Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++I +P NV +LIGPEGG S+E F L LGPR+LR++TAA+ A+ + Sbjct: 177 YSINTLPEPVTNVRLLIGPEGGLSSDEISMTEQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|21232316|ref|NP_638233.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767551|ref|YP_242313.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. campestris str. 8004] gi|188990664|ref|YP_001902674.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. campestris str. B100] gi|21114084|gb|AAM42157.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572883|gb|AAY48293.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732424|emb|CAP50618.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 244 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R +V PL + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSYVALPLHSGGDVTLPEESANHLLRVLRLREGDACVLFNGDGSDYHARITVAGKRE 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE ++ S + + + ++D ++QK+ E+G+ A+ PV T+ Sbjct: 62 ARAVVERVEAVSNEPPLAITLLQGIARGEKMDLILQKATELGVTAVVPVNAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 M R+ +SA EQ +P + PP++L+ + D + D E+ Sbjct: 122 ARLEKRMAHWRSVIVSACEQSGRARIPSLAPPSSLQDAARASDAQALRLTLDPH--GEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A+ + + IGPEGG+ ++ TL F T L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-AVQPGQELIVAIGPEGGWSPRDRTTLGEAGF-TGLRLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|323498678|ref|ZP_08103669.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM 21326] gi|323316278|gb|EGA69298.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM 21326] Length = 243 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 115/238 (48%), Gaps = 36/238 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82 S D ++ VLRMKEG +LLF+G E+ + IS V KS+ +V E RS D+ Sbjct: 21 SDDAAGHIGRVLRMKEGQQVLLFDGSGSEFPATISSVSKKSVEVEVTERIERSAESPLDL 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 + +++++ IQKSVE+G+ I P+I+ + M + + ISA E Sbjct: 81 HLGQVVSRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQKRFEKKMAQWQKIAISACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189 QC T+P I P LE +W CG E KL ++I +P Sbjct: 141 QCGRNTVPEIRPIMQLE----DW------------CGEEYDGLKLNLHPRAKYSINTLPT 184 Query: 190 ----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 185 PVERVRLLIGPEGGLSAEEISMTEKYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|84623346|ref|YP_450718.1| hypothetical protein XOO_1689 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|229558004|ref|YP_200425.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367286|dbj|BAE68444.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 244 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 16/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEH 178 Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L + IP ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 179 RLGTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIA 235 Query: 236 LVQAICGD 243 +Q+ GD Sbjct: 236 ALQSRFGD 243 >gi|90415442|ref|ZP_01223376.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium HTCC2207] gi|90332765|gb|EAS47935.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium HTCC2207] Length = 245 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 18/249 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F D PL SG +L+ LRM G I LFNG GE+ + ++ KS Sbjct: 2 RIPRIFTDQPLSSGANLALSGSAARHLSSALRMSAGQEITLFNGLGGEFSATLTRATKSQ 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + +++ + ++ + + R+D+++QK+ E+G+ I P+ + T+ N Sbjct: 62 VDVSIGDFRDIDRESPLNLHLAIAVSRGERMDWIVQKATELGVSEITPLFSERTE-VKLN 120 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R+ + +ISA EQC +P I P TL+ L N + + S+ Sbjct: 121 GERLEKKLRHWQQVSISACEQCQRNLVPSINPALTLDQWLSQDTGNAEQLKLVLHHRSDK 180 Query: 177 SLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 SL + H P + +L+GPEGG E F L+LGPR++R++TA +AA+ Sbjct: 181 SLAQ-----HQPPKSACLLVGPEGGLSDNEISRAMDNGFAA-LTLGPRVMRTETAPLAAI 234 Query: 235 ALVQAICGD 243 +++Q++ GD Sbjct: 235 SIMQSVWGD 243 >gi|229358034|ref|YP_001914280.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv. oryzae PXO99A] Length = 244 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 16/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEH 178 Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L + IP ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 179 RLGTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIA 235 Query: 236 LVQAICGD 243 +Q+ GD Sbjct: 236 ALQSRFGD 243 >gi|326389861|ref|ZP_08211425.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus JW 200] gi|325994129|gb|EGD52557.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus JW 200] Length = 245 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 18/231 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 G+ +H+L +VLR+K G+ I+ +G E+ ++I + K I F +E + S T+ + Sbjct: 19 EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESALE 76 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 +F + K+++++ +IQK E+G+ PV+TRYT N + + R R + A Sbjct: 77 ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADE-TCGSENSLEKLHAIAHIPNVAI 192 +Q +P I P + E + D C I + E T + LEK + I I Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLKEVLEKAKGVKKI---GI 193 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ EE E L + P+SLGPRILR++TAA+A ++V GD Sbjct: 194 FIGPEGGFSQEEIE-LALNKSIKPVSLGPRILRTETAAIAVCSIVMYELGD 243 >gi|182680714|ref|YP_001828874.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M23] gi|182630824|gb|ACB91600.1| protein of unknown function DUF558 [Xylella fastidiosa M23] Length = 242 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 20/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 1 MSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRREA 60 Query: 65 ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 I E + S + VQ I + ++D ++QK+ E+G+ AI PV T + Sbjct: 61 WARIEGVSEVCNESPLAITLVQAI---TRGEKMDLIVQKATELGVVAIVPVDTERS-GVR 116 Query: 122 YNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + +RV ISA EQC +P + P L+ L + D + + D S Sbjct: 117 LDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILDPK--S 174 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+ L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A+ Sbjct: 175 EHRLSTLSRLTPV-EVIIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTAI 232 Query: 235 ALVQAICGD 243 A++QA GD Sbjct: 233 AVLQAQLGD 241 >gi|148361269|ref|YP_001252476.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby] gi|148283042|gb|ABQ57130.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby] Length = 242 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79 S + ++ VLRM++G+ + LFNG + E+ + I V K F +E S K Sbjct: 21 SPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTASIERVKKKQVFVRIASVLEVNRESPLKI 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 Q I K R++ ++QKS E+G+ I P+IT Q M + I Sbjct: 81 HLAQAIS---KGERMEVVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P + P L+ ++ + +++ + P+VA++ Sbjct: 138 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ S+E+ TL S PLSLGPR+LR++TAA+ A++++QA GD Sbjct: 193 IGPEGGF-SDEEITLTSGYGFLPLSLGPRVLRTETAAITALSVLQAAGGD 241 >gi|167040699|ref|YP_001663684.1| 16S ribosomal RNA methyltransferase RsmE [Thermoanaerobacter sp. X514] gi|300914740|ref|ZP_07132056.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561] gi|307724026|ref|YP_003903777.1| hypothetical protein Thet_0859 [Thermoanaerobacter sp. X513] gi|166854939|gb|ABY93348.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X514] gi|300889675|gb|EFK84821.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561] gi|307581087|gb|ADN54486.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X513] Length = 245 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 132/246 (53%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 +++ FVD + G H++ +VLR+K+GD I++ +G E+ + I V K+ + Sbjct: 1 MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDG-STEYQTSIYGVEKNRV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 +E + +S T+ S +F + K+++++ +IQK E+G+ P+ITRY+ +N+ Sbjct: 60 ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119 Query: 121 HYN--MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + N ++R + A +Q +LP I P + E LK + + E + Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL-SLGPRILRSDTAAVAAMALV 237 E L + +I VAI +GPEGG+ EE + +L + L SLGPRILR++TAA++ ++V Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDL--ALRYSAKLVSLGPRILRTETAAISVCSIV 237 Query: 238 QAICGD 243 GD Sbjct: 238 MYELGD 243 >gi|54295775|ref|YP_128190.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens] gi|53755607|emb|CAH17109.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens] Length = 244 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79 S + ++ VLRM++G+ + LFNG + E+ + I V K F +E S K Sbjct: 23 SPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIEMVKKKQVFVRIASVLEVNRESPLKI 82 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 Q I K R++ ++QKS E+G+ I P+IT Q M + I Sbjct: 83 HLAQAIS---KGERMEMVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 139 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P + P L+ ++ + +++ + P+VA++ Sbjct: 140 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 194 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA GD Sbjct: 195 IGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAAGGD 243 >gi|209694142|ref|YP_002262070.1| 16S ribosomal RNA methyltransferase RsmE [Aliivibrio salmonicida LFI1238] gi|208008093|emb|CAQ78234.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 243 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 18/240 (7%) Query: 15 PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 P + +QGK S D +++ V+RMKEG+ +LLF+G E+ + I+ K +VE Sbjct: 9 PELLPSQGKVNLSDDAANHVGRVMRMKEGEAVLLFDGSGAEFPAVITSSSKK-SVEVEIS 67 Query: 73 SR-SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123 R + +S + + + +++++ IQKSVE+G+ I P+I+ + Sbjct: 68 ERIDHSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNKERFEKK 127 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +D+ I+A EQC T+P I P +LE ++ S N+L + Sbjct: 128 LDQWHKIAIAACEQCGRNTIPEIRPIMSLEEWCAEEYEGLKLNLHPRAKYSINTLPE--- 184 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + NV +LIGPEGG SEE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 185 --PVTNVRLLIGPEGGLSSEEITMTEQYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|164685878|ref|ZP_01945479.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918716|ref|ZP_02218802.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|164601398|gb|EAX33970.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917544|gb|EDR36148.1| conserved hypothetical protein [Coxiella burnetii RSA 334] Length = 244 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 20/247 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 5 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64 Query: 65 IRFKVEYQSRSQTKQSDV----QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119 + ++ + +T+ S Q IF ++ ++DY IQK+VE+G+ I P+IT T Sbjct: 65 VEITIDSKEAGRTESSLFIELGQGIF---RSEKMDYAIQKAVELGVNRIVPLITERTSTK 121 Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSEN 176 + + IS EQ +P + +L L +V C ++N Sbjct: 122 PKTQKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQN 176 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 SL + + +LIGPEGG +E + F L LGPRILR++TA V A++L Sbjct: 177 SLADFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSL 233 Query: 237 VQAICGD 243 +QA GD Sbjct: 234 IQAYFGD 240 >gi|212217753|ref|YP_002304540.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii CbuK_Q154] gi|212012015|gb|ACJ19395.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 270 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 20/247 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 31 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 90 Query: 65 IRFKVEYQSRSQTKQSDV----QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119 + ++ + +T+ S Q IF ++ ++DY IQK+VE+G+ I P+IT T Sbjct: 91 VEITIDSKEAGRTESSLFIELGQGIF---RSEKMDYAIQKAVELGVNRIVPLITERTSTK 147 Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSEN 176 + + IS EQ +P + +L L +V C ++N Sbjct: 148 PKTQKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQN 202 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 SL + + +LIGPEGG +E + F L LGPRILR++TA V A++L Sbjct: 203 SLADFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSL 259 Query: 237 VQAICGD 243 +QA GD Sbjct: 260 IQAYFGD 266 >gi|161831038|ref|YP_001597773.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA 331] gi|212211957|ref|YP_002302893.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii CbuG_Q212] gi|161762905|gb|ABX78547.1| conserved hypothetical protein [Coxiella burnetii RSA 331] gi|212010367|gb|ACJ17748.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 244 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 14/244 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 5 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN--TH 121 + ++ + +T+ S + I ++ ++DY IQK+VE+G+ I P+IT T Sbjct: 65 VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLE 179 + + IS EQ +P + +L L +V C ++NSL Sbjct: 125 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQNSLA 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + +LIGPEGG +E + F L LGPRILR++TA V A++L+QA Sbjct: 180 DFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSLIQA 236 Query: 240 ICGD 243 GD Sbjct: 237 YFGD 240 >gi|21243796|ref|NP_643378.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas axonopodis pv. citri str. 306] gi|21109388|gb|AAM37914.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R +VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ LP + P L+ + D + + D E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLDPQ--GEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + ++ + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-ASSIQQHIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|254787838|ref|YP_003075267.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901] gi|237684009|gb|ACR11273.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901] Length = 241 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 15/223 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 H+L VLRM+ G ++LFNG GE+ + I S K+ + + + V + Sbjct: 26 HHLLKVLRMETGRELILFNGLGGEYRATITSATKKAATVTISEHDPVERESPLVTELAVG 85 Query: 89 I-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDIL 141 I + +R D+++QK+ E+G+ I P+ + ++ + + + I A EQC Sbjct: 86 ISRGDRFDWVLQKATELGISRIVPLFSERSEVKLSGERLEKRLSQWQKVVIGACEQCQRN 145 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 TLP + P ++E + D C + F S L +A +VA+L+GPEGG Sbjct: 146 TLPELTAPQSVENYVT--DSLCDLRFVLH----HRSTHHLSQLAAPASVALLVGPEGGLS 199 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E + + F +PL+LGPR+LR++TA + A+++VQA GD+ Sbjct: 200 DAEIQLAENAGF-SPLALGPRVLRTETAPLVALSVVQATWGDF 241 >gi|330886230|gb|EGH20131.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. mori str. 301020] Length = 239 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+G I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + + F LGPR+LR++TA A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAA-RLGPRVLRTETAPAVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|71275479|ref|ZP_00651765.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon] gi|71900654|ref|ZP_00682779.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] gi|170729396|ref|YP_001774829.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M12] gi|71163779|gb|EAO13495.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon] gi|71729589|gb|EAO31695.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] gi|167964189|gb|ACA11199.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 244 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 20/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 I E + S + VQ I + ++D ++QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAIA---RGEKMDLIVQKATELGVVAIVPVDTERS-GV 117 Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + +RV +SA EQC +P + P L+ L + D + + D Sbjct: 118 RLDSERVAKRLAHWNNVVVSACEQCGRTRVPEVQMPRALQALPEILDPDTLRLILDPK-- 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 SE+ L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A Sbjct: 176 SEHRLSTLSRLTPV-AVTIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233 Query: 234 MALVQAICGD 243 +A++QA GD Sbjct: 234 IAVLQAQLGD 243 >gi|215919303|ref|NP_820935.2| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA 493] gi|206584188|gb|AAO91449.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493] Length = 260 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 14/244 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 21 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 80 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN--TH 121 + ++ + +T+ S + I ++ ++DY IQK+VE+G+ I P+IT T Sbjct: 81 VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 140 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLE 179 + + IS EQ +P + +L L +V C ++NSL Sbjct: 141 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQNSLA 195 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + +LIGPEGG +E + F L LGPRILR++TA V A++L+QA Sbjct: 196 DFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSLIQA 252 Query: 240 ICGD 243 GD Sbjct: 253 YFGD 256 >gi|320116218|ref|YP_004186377.1| hypothetical protein Thebr_1425 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319929309|gb|ADV79994.1| protein of unknown function DUF558 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 245 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 12/228 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 G+ +H+L +VLR+K G+ I+ +G E+ ++I + K I F +E + S T+ + Sbjct: 19 EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESALE 76 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 +F + K+++++ +IQK E+G+ PV+TRYT N + + R R + A Sbjct: 77 ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +Q +P I P + E + D + E + E L + + I IG Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLKEVLKKAKGVKKIGIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ EE E L + P+SLGPRILR++TAA+A ++V GD Sbjct: 197 PEGGFSQEEIE-LALNKSIKPVSLGPRILRTETAAIAVCSIVMYELGD 243 >gi|220936059|ref|YP_002514958.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7] gi|219997369|gb|ACL73971.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7] Length = 244 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 15/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIR 66 RL+++ L + + + ++ VLR++ G ++LFNG+ GE+ + ++ K S Sbjct: 5 RLYLNQSLSVGDTIELDERAHRHVVQVLRLRPGAELVLFNGQGGEYRATLTEAQKRHSSV 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 + R V + K +R+DY +QK+ E+G+ I+PV+T+ +Q Sbjct: 65 SLTGFDPRDTRPALPVTLVQGISKGDRMDYSLQKATELGVSRIQPVLTQRSQAPGDPRRL 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLE 179 ++ R ISA EQC LP + + + +L D +V +E L Sbjct: 125 DNRLEHWRGVVISACEQCGRNELPELGGVISFQAWLGSEPDSGLGLVLDPR---AETGLS 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + V++LIGPEGG E F TP+ LGPRILR++TA VAA+A++Q Sbjct: 182 GL--VPPEGEVSLLIGPEGGLDEAEILAARHRGF-TPVRLGPRILRTETAGVAALAVIQG 238 Query: 240 ICGD 243 + GD Sbjct: 239 LWGD 242 >gi|27364902|ref|NP_760430.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio vulnificus CMCP6] gi|37681051|ref|NP_935660.1| hypothetical protein VV2867 [Vibrio vulnificus YJ016] gi|320155285|ref|YP_004187664.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus MO6-24/O] gi|27361047|gb|AAO09957.1| Ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus CMCP6] gi|37199801|dbj|BAC95631.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319930597|gb|ADV85461.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus MO6-24/O] Length = 243 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 14/227 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82 S D ++ VLRMKEG +LLF+G E+ + IS VG KS+ ++ E RS D+ Sbjct: 21 SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVGKKSVMVELSERVERSSESPLDL 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 + ++++ IQKSVE+G+ I P+I+ + + + + ISA E Sbjct: 81 HLGQVISRGEKMEFTIQKSVELGVNTITPLISDRCGVKLDEKRFEKKLAQWQKIAISACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC T+P I P +LE ++ S N+L + + V +LIGP Sbjct: 141 QCGRNTIPEIRPIMSLEAWCAEEYDGLKLNLHPRAKYSINTLPE-----PVTKVRLLIGP 195 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG SEE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 196 EGGLSSEEIDMTQQYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|330951354|gb|EGH51614.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit 7] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 V+ +S + ++S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQQESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|54298937|ref|YP_125306.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila str. Paris] gi|53752722|emb|CAH14157.1| hypothetical protein lpp3004 [Legionella pneumophila str. Paris] Length = 244 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79 S + ++ VLRM++G+ + LFNG + E+ + I V K F +E S K Sbjct: 23 SPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFVRIASVLEVNRESPLKI 82 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 Q I K R++ ++QKS E+G+ I P+IT Q M + I Sbjct: 83 HLAQAIS---KGERMEVVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 139 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P + P L+ ++ + +++ + P+VA++ Sbjct: 140 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 194 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ S+E+ TL S PLSLGPR+LR++TAA+ A++++QA GD Sbjct: 195 IGPEGGF-SDEEITLTSGYGFLPLSLGPRVLRTETAAITALSVLQAAGGD 243 >gi|52843130|ref|YP_096929.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630241|gb|AAU28982.1| hypothetical protein lpg2936 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 244 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79 S + ++ VLRM++G+ + LFNG + E+ + I V K F +E S K Sbjct: 23 SPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIERVKKKQVFVRIASVLEVNRESPLKI 82 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 Q I K R++ ++QKS E+G+ I P+IT Q M + I Sbjct: 83 HLAQAIS---KGERMEMVMQKSAELGVACITPLITERCQVKIDKEKMAKKMHQWLNIIIG 139 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P + P L+ ++ + +++ + P+VA++ Sbjct: 140 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 194 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA GD Sbjct: 195 IGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAAGGD 243 >gi|254496687|ref|ZP_05109550.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254354115|gb|EET12787.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 242 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S + ++A VLRM+ G+ + LF G + E+ + I V K + K+S + Sbjct: 21 SPEASQHVAVVLRMQIGEQLTLFCGDNREFTATIEAVKKKQVMVTVNAVTAINKESPLAI 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 + K R++ ++QK+VE+G+ I P+I+ + + + + I+A E Sbjct: 81 HLAQAISKGERMELVMQKAVELGVTRITPIISERCVVKLDQERMGKKLHQWQAIVIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q T+P I+PP TL L+ + + Q+ G++N + + N+A+LIGP Sbjct: 141 QSGRNTVPVIHPPLTLARYLQ--EESAQLKLILHPGGNKNWRDYTFTQS---NIALLIGP 195 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG E + + F PLSLGPRILR++TAA+ A++++QA+ GD Sbjct: 196 EGGLSDAEVHSASAQGF-QPLSLGPRILRTETAAITALSVLQAVAGD 241 >gi|296108607|ref|YP_003620308.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99 Alcoy] gi|295650509|gb|ADG26356.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99 Alcoy] Length = 242 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79 S + ++ VLRM++G+ + LFNG + E+ + I V K F +E S K Sbjct: 21 SPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFVRIASVLEVNRESPLKI 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 Q I K R++ ++QKS E+G+ I P+IT Q M + I Sbjct: 81 HLAQAIS---KGERMEVVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P + P L+ ++ + +++ + P+VA++ Sbjct: 138 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ S+E+ TL S PLSLGPR+LR++TAA+ A++++QA GD Sbjct: 193 IGPEGGF-SDEEITLTSGYGFLPLSLGPRVLRTETAAITALSVLQAAGGD 241 >gi|297568502|ref|YP_003689846.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] gi|296924417|gb|ADH85227.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] Length = 242 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 ++R F+D + +G H+L HVLR+ G+ + LF+G+ + + I ++ + Sbjct: 1 MRRFFIDPEAIQGREASLTGSDAHHLQHVLRLTPGERVELFDGRGTVYQAAIDHIEPGLT 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 R + S + + + + +K ++D ++QK E+G+ ++RP +++T + Sbjct: 61 RLTLLSSSDTPPDRLAIHLGQAMLKGKKMDLVVQKCTELGVRSLRPYTSQHTTTPPPGAE 120 Query: 126 RVRTYTI---SAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGS--ENSLE 179 ++ + + +QC+ P +PP T E L D + +++ +E N E Sbjct: 121 KLARWQRIIHESCKQCNQPWPPSCHPPQTFAELLADAADFDLRLICWEEPEAPPLSNIAE 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +L A A +V +LIGPEGG+ EE + F+ + LG RILR++TA++ +AL+Q Sbjct: 181 QLGAPA---SVLVLIGPEGGFSREEIDLARQAGFIV-IGLGRRILRAETASIVIIALLQY 236 Query: 240 ICGDWY 245 I D Y Sbjct: 237 IFNDLY 242 >gi|289667429|ref|ZP_06488504.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ +P + P L+ + D + + D E+ Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLDPQ--GEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + ++ + IGPEGG+ ++ L F T L LGPRILR++TA +AA+A + Sbjct: 180 LGTLASSVQ-QHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|307543622|ref|YP_003896101.1| hypothetical protein HELO_1033 [Halomonas elongata DSM 2581] gi|307215646|emb|CBV40916.1| K09761 hypothetical protein [Halomonas elongata DSM 2581] Length = 248 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 17/222 (7%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++A VLR+ G +++F+G+ E + ++ G K + +VE + + + ++ I Sbjct: 34 HVARVLRLGPGAPVIIFDGQGNEAEAILTEAGRKQVVARVERVAAGRGESPLAVHLGQAI 93 Query: 90 -KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 K +R+DY IQK+VE+G+ I P+ T + + + + SA EQC T Sbjct: 94 SKGDRMDYAIQKAVELGVAEITPLYTEHGDVRLKGEREAKKLAHWQAVAASACEQCGRAT 153 Query: 143 LPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 LP +YPP + +++L + + C ++ G + + + A A+LIGPEGG Sbjct: 154 LPPVYPPRSVVDWLAERDEPLCLVLHPGTPGGLDRHDDPVRA-------ALLIGPEGGLS 206 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E + F + L+LGPRILR++TA V A++L+Q GD Sbjct: 207 HAEVDAAADAGFAS-LTLGPRILRTETAPVVALSLLQNRFGD 247 >gi|256752132|ref|ZP_05492998.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus CCSD1] gi|256748946|gb|EEU61984.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus CCSD1] Length = 245 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 12/228 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 G+ +H+L +VLR+K G+ I+ +G E+ ++I + K I F +E + S T+ Sbjct: 19 EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESPLE 76 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 +F + K+++++ +IQK E+G+ PV+TRYT N + + R R + A Sbjct: 77 ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +Q +P I P + E + D + E + E L + + I IG Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLKEVLKKAKGVKKIGIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ EE E L + P+SLGPRILR++TAA+A ++V GD Sbjct: 197 PEGGFSQEEIE-LALNKSIKPVSLGPRILRTETAAIAVCSIVMYELGD 243 >gi|330984681|gb|EGH82784.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009640|gb|EGH89696.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 239 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|294627316|ref|ZP_06705902.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667456|ref|ZP_06732673.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598398|gb|EFF42549.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602789|gb|EFF46223.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R +VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ LP + P L+ + D + + D E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLDPQ--GEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + + + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-ASSIQQYIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|254796435|ref|YP_003081271.1| hypothetical protein NRI_0035 [Neorickettsia risticii str. Illinois] gi|254589672|gb|ACT69034.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 232 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 27/242 (11%) Query: 6 HLKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L RLF++ K T+ + HYL V+R+++ +++FNG+ GEW++K+ Sbjct: 2 RLTRLFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEAQVIVFNGRSGEWIAKVDR---- 57 Query: 65 IRFKV-EYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 F V + Q R QT D+ F+ K L ++++ E+ + +RP+ + +N + Sbjct: 58 -NFLVPDIQIRPQTASYPYDIHLCFAVPKHKALKETVRQATELDVTTLRPIYSSRAENKN 116 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +++++ + I AA+QC +++P + PP L ++ + N + DET Sbjct: 117 KDLEKLELWAIEAAQQCRRMSIPILLPPIALRE-VETYHEN--VFICDETLSDS------ 167 Query: 182 HAIAHIPNVA---ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I IP ++ I+IGPEGG+ EE + +SLG ILR TAA +A+A V+ Sbjct: 168 -VICDIPILSSYTIVIGPEGGFSHEELSLIDKR-----ISLGRTILRCSTAATSAIAQVR 221 Query: 239 AI 240 ++ Sbjct: 222 SV 223 >gi|78048759|ref|YP_364934.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925762|ref|ZP_08187135.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118] gi|78037189|emb|CAJ24934.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543819|gb|EGD15229.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118] Length = 244 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 66 RFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + ++ + +S ++ + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ LP + P L+ + D + + D E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAVPQGLQDAAQASDAHALRLTLDPQ--GEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + +V + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-ASSIQQHVVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|160872460|ref|ZP_02062592.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121259|gb|EDP46597.1| conserved hypothetical protein [Rickettsiella grylli] Length = 241 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 118/228 (51%), Gaps = 17/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV-EYQSRSQTKQSDV 82 S + H+L VLR++ GD ++FNG+ GE+ + I + + R K+ E+ + ++ + Sbjct: 21 SQEAAHHLIRVLRLQVGDECIIFNGQAGEFQATIIERIKTTARVKLGEFNAINRESPLQI 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI-------SAA 135 + + + ++++DY++QK+VE+G+ + P++T ++ DR + A Sbjct: 81 TLVQAILHSDKMDYLLQKAVELGVTHVIPLLTAHS-TLKLTPDRWEKRYVHWQGVMRGAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ +P + P T + + +I+ + + LH++ V + IG Sbjct: 140 EQSGRTRIPILENPMTFDVAMMALKAETRIIL------QPAAKKMLHSLPFCQRVVLCIG 193 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ E ++ + F + +GPR+LRS+TA V AM+L+Q + GD Sbjct: 194 PEGGWSLNELDSAQKMGF-QAMKMGPRVLRSETAGVVAMSLLQGLYGD 240 >gi|188521803|gb|ACD59748.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 227 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 16/227 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE-YQSRSQTKQSDVQY 84 + ++L VLR+++GD +LFNG ++ ++I+ GK R VE + S + Sbjct: 6 ESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRDARALVERVEPLSNESPLRITL 65 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQC 138 + + ++D ++QK+ E+G+ AI PVI T+ T + R+ +SA EQ Sbjct: 66 MQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDAARTEKRVAHWRSVVVSACEQS 125 Query: 139 DILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGP 196 LP + P L+ + D H ++ + E+ L L + IP + + IGP Sbjct: 126 GRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEHRLGTL--ASSIPQHIVVAIGP 180 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG+ ++ TL F + L LGPRILR++TA +AA+A +Q+ GD Sbjct: 181 EGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAALQSRFGD 226 >gi|289664251|ref|ZP_06485832.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 244 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLIRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ +P + P L+ + D + + D E+ Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLDPQ--GEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + ++ + IGPEGG+ ++ L F T L LGPRILR++TA +AA+A + Sbjct: 180 LGTLASSVQ-QHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|320322008|gb|EFW78104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. B076] gi|320330886|gb|EFW86860.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. race 4] gi|330872110|gb|EGH06259.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. race 4] Length = 239 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|71737741|ref|YP_272747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558294|gb|AAZ37505.1| uncharacterized conserved protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 239 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTEAPLSLGEH-ELPEAQTHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|149191952|ref|ZP_01870183.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1] gi|148834219|gb|EDL51225.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1] Length = 243 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 28/234 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D ++ VLRMKEG +LLF+G E+ + I+ +GK V+ Q + T Sbjct: 21 SEDAAGHVGRVLRMKEGQEVLLFDGSGHEFPATITQIGKK-NVDVDIQEKVSTS------ 73 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129 I SP+ + +++++ IQKSVE+G+ I P+I+ + + + + Sbjct: 74 IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDAKRFEKKLQQWQK 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 ISA EQC T+P I P +LE ++ S N+L + + Sbjct: 134 IAISACEQCGRNTIPEIRPIMSLEQWCAEPSEALKLNLHPRAKYSINTLPE-----PVTK 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 189 VRLLIGPEGGLSAQEIEMTEQYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|119773713|ref|YP_926453.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella amazonensis SB2B] gi|119766213|gb|ABL98783.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 243 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 36/257 (14%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R+F L + D + ++ VLRM EG+ I +FNG ++L+ I G KS Sbjct: 2 RIPRIFQPLDLSPSAEFALDEDGFAHVGRVLRMGEGEQIRVFNGDGKDYLADIVSAGKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV +Q++ ++ I + +R+D+ +QKSVE+G+ I P+ + Sbjct: 62 LTVKVVAVEDNQSESPLHLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P + P L E C + S Sbjct: 122 ERLDKKIAQWQKIVISACEQCGRATVPVVRPVMDLA----------------EWCAEQTS 165 Query: 178 LEKL-------HAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 KL H I + P V +LIGPEGG +EE + F T + LGPR+LR+ Sbjct: 166 ALKLNLHPRADHGINGLVLDNPRVRLLIGPEGGLSAEEIAMTETHKF-TEVLLGPRVLRT 224 Query: 227 DTAAVAAMALVQAICGD 243 +TAA+ A+ +Q GD Sbjct: 225 ETAALTAITALQMKFGD 241 >gi|302188983|ref|ZP_07265656.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae 642] Length = 239 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ + V I + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLNESFAGQVESVLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLTEWIKQTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|119358138|ref|YP_912782.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium phaeobacteroides DSM 266] gi|119355487|gb|ABL66358.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides DSM 266] Length = 248 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 17/230 (7%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS--Q 76 +T+ GD++H+L V+R K GD +LL +G + +I +GK R + +RS Sbjct: 15 RTEIALEGDEFHHLVRVVRKKPGDEVLLTDGNGSRFHVRIREIGKQ-RLTADILTRSIYP 73 Query: 77 TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 + V S +KT +R D ++K+ E+G+ AI P+IT T + +DR + Sbjct: 74 PSPTAVTVAMSLLKTPHRFDLFLEKATELGVTAIIPMITARTIALPPKERIQGKLDRWQG 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 +SA+ Q L LP I+ P + +L +++ +I+ A E+ +N L N Sbjct: 134 IVLSASRQSKRLFLPRIHEPLSFAKVLDRDEYDLRIL-AHESS-EQNPLIDFAE----KN 187 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V +IGPEGG+ SEE S V SLG ILR++TA V A+A+V+A Sbjct: 188 VLFMIGPEGGFTSEEVSRARSCG-VLESSLGHTILRAETAGVFAVAMVRA 236 >gi|262368644|ref|ZP_06061973.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316322|gb|EEY97360.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 238 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 21/242 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + R F++ L + + + +H+ VLR + G+ LFNG+ GE+ +S V KS Sbjct: 1 MPRFFMEAELNVDHTVELTETVFHHWVKVLRAQVGETATLFNGQGGEYEVTLSDVAKKSA 60 Query: 66 RFKVEY---QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTH 121 +V +R+ ++ + + S K +R+DY+IQK+VE+G+ I+ + + R Sbjct: 61 SVQVTAFNPTNRTPAFKALLGQVMS--KGDRMDYVIQKAVELGVSEIQLLTSERCEMRLK 118 Query: 122 YNMDRVRT-----YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Y+ D+ + I+A EQC + +P I P +LE L + ++V A Sbjct: 119 YDRDQKKIDHWQGIAIAACEQCGMNLVPKILAPVSLEKWLASELPATRLVLAPNK----- 173 Query: 177 SLEKLHAIAH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EKL +AH PN+A+LIGPEGG E T + F++ +G R+LR++TA V A++ Sbjct: 174 --EKLDVLAHATPNIALLIGPEGGLSEAEIITANEHGFIS-WCIGERVLRTETAPVVALS 230 Query: 236 LV 237 ++ Sbjct: 231 IL 232 >gi|78486164|ref|YP_392089.1| hypothetical protein Tcr_1823 [Thiomicrospira crunogena XCL-2] gi|78364450|gb|ABB42415.1| Conserved hypothetical protein with DUF 558 [Thiomicrospira crunogena XCL-2] Length = 245 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 16/227 (7%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86 Q HY VLR+K+ I +F+GK + + + G+ + S +S +Q + Sbjct: 24 QAHYALTVLRLKDQRPIEVFDGKGHQAHATLQVTGRKTADVFIERCESVNTESPLQTVLL 83 Query: 87 -SPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTHYNMDRVRT----YTISAAEQCD 139 K +R+DY IQKSVE+G+ AI+P+ T + T +D+ RT I+A EQ + Sbjct: 84 QGISKGDRMDYTIQKSVELGVTAIQPLFTERCDVKLTGDRLDKKRTQWQDIAINACEQSN 143 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P + PP + L +V + +E++L+ L + +V +LIGPEGG Sbjct: 144 RNVVPAVLPPLSYSDWLSTQTLVSGLVLSPT---AEHTLQTLPSSLSEQSVHLLIGPEGG 200 Query: 200 YHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE + T L TP+ LGPRILR++TA V ++ +Q + GD+ Sbjct: 201 LTDEEVLQGTQKGL---TPIQLGPRILRTETAGVVVLSALQTLWGDF 244 >gi|282891340|ref|ZP_06299842.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498837|gb|EFB41154.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 241 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 15/238 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66 +R ++ P ++ G ++H+L HV+R + G+++ + NG+ G + + ++ K Sbjct: 4 ERYYIPQPFQKGSELIIEGQEFHHLVHVMRTQVGESVEVVNGEGGFGHAVLEHLEKKRAI 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR---YTQNTHYN 123 F+VE + +V + K NRLD++++K E+GM ++ Q T + Sbjct: 64 FRVEETVQHPKPAFEVILAQAIPKINRLDFILEKGTELGMTQFWLFPSQRGERKQLTEHQ 123 Query: 124 MDRVRTYTISAAEQCDILTLPFIY--PPTTLEFLLKNWDHNCQI--VFADETCGSENSLE 179 ++R+R +I+A +QC LP I PP L+ W+ N + +F + + + +E Sbjct: 124 IERMRALSIAAMKQCGSFYLPTILMKPP------LEKWERNLPLPALFGNVQPDAPSCVE 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 KL V +GPE G+ EE++TL +L V + L P ILR+DTAA+AA+ + Sbjct: 178 KLKQERFQNGVIFFVGPESGFSYEEEKTLQALD-VEGVKLHPHILRTDTAAIAALCAI 234 >gi|241668207|ref|ZP_04755785.1| 16S rRNA m3U1498 methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876742|ref|ZP_05249452.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842763|gb|EET21177.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 241 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 16/231 (6%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQT 77 T+ SG+ Y+Y +VLR+K+ D I LFN DG ++ ++I + KSI +V + Sbjct: 16 TELSISGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKTQIIDINNKSILLEVIEKKEIHN 75 Query: 78 KQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTY 130 + + I+ IK ++++QK+ E+G+ I P+IT YT + ++R Sbjct: 76 ENKYIVNIYQAIIKNENFEFIVQKATELGVNNIYPIITEYTNHKFDKKGFDKKLERWNKI 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+AAEQC + +P I+ P + + L N N + T + +L K H Sbjct: 136 AIAAAEQCGRVFIPKIHYPIEINSIHLSNSHINIALCPYSNTPENFENLIKTH-----DK 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 I IGPEGG+ ++E E + F T ++LG RIL+++TA + +A++ + Sbjct: 191 FNIFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPINILAIINFV 240 >gi|254230223|ref|ZP_04923615.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262393236|ref|YP_003285090.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25] gi|151937255|gb|EDN56121.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262336830|gb|ACY50625.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25] Length = 243 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 26/233 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRMKEG ++LLF+G E+ + IS V K +I +VE S Sbjct: 21 SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKKTVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130 Q I + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 134 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 ISA EQC +P I P +LE K ++ S N+L + V Sbjct: 135 AISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRANYSINTLP-----TPVEKV 189 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG SEE E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 190 RLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|82701513|ref|YP_411079.1| hypothetical protein Nmul_A0379 [Nitrosospira multiformis ATCC 25196] gi|82409578|gb|ABB73687.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 255 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 27/236 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSP 88 H+ A VLR++ GD ++LFNG GE+ I K + VE + + ++S + + + Sbjct: 26 HHAARVLRLEAGDEVVLFNGDGGEFTCVILRASKQGVDVVVERHVQVE-RESPLTILLAQ 84 Query: 89 --IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 ++D+++QK+VE+G+ I+P+IT+ + + + ++ ISA EQC Sbjct: 85 AVCMGEKMDWIVQKAVELGVTRIQPLITKQSVVRLGGERGEKRVSHLQKVVISACEQCGR 144 Query: 141 LTLPFIYPPTTLEFLLKNW---DHNCQIVFAD----ETCG-----SENSLEKLHAIAHIP 188 +P + P TL +NW + + +D + C + L ++I Sbjct: 145 NHVPEVLPLATL----RNWLGRQTEARRMSSDSLSPDACFMLSPFATKGLRDFKHSSNIG 200 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +L+GPEGG+ +E+ F+ PL LG RILR+++AA+AA+ +QA+ GD+ Sbjct: 201 SIILLVGPEGGFTQDEEAAAMVAGFI-PLRLGHRILRTESAALAAVGAMQALWGDY 255 >gi|261250170|ref|ZP_05942746.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis CIP 102891] gi|260939286|gb|EEX95272.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis CIP 102891] Length = 258 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 48/244 (19%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRMKEG +LLF+G E+ ++I+ V K SI +VE S S Sbjct: 36 SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAEIASVSKKNVEVSIIQRVERSSESPLDL 95 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130 Q + + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 96 HLGQVVS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 149 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HA 183 ISA EQC T+P I P LE E CG E KL ++ Sbjct: 150 AISACEQCGRNTVPEIRPIMQLE----------------EWCGEEYDGLKLNLHPRAKYS 193 Query: 184 IAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I +P V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q Sbjct: 194 INTLPTPVEKVRLLIGPEGGLSAEEIGMTENYKFEETL-LGPRVLRTETAALTAITALQV 252 Query: 240 ICGD 243 GD Sbjct: 253 RFGD 256 >gi|289578110|ref|YP_003476737.1| hypothetical protein Thit_0897 [Thermoanaerobacter italicus Ab9] gi|289527823|gb|ADD02175.1| protein of unknown function DUF558 [Thermoanaerobacter italicus Ab9] Length = 245 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 131/246 (53%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 +++ FVD + G H++ +VLR+K+GD I++ +G E+ + I V K+ + Sbjct: 1 MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDG-STEYQTSIYGVEKNRV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 +E + +S T+ S +F + K+++++ +IQK E+G+ P+ITRY+ +N+ Sbjct: 60 ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119 Query: 121 HYN--MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + N ++R + A +Q +LP I P + LK + + E + Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFGEALKRIEEFDLCIIPYEKEKTLKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL-SLGPRILRSDTAAVAAMALV 237 E L + +I VAI +GPEGG+ EE + +L + L SLGPRILR++TAA++ ++V Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDL--ALRYSAKLVSLGPRILRTETAAISVCSIV 237 Query: 238 QAICGD 243 GD Sbjct: 238 MYELGD 243 >gi|330899324|gb|EGH30743.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 239 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|330942525|gb|EGH45109.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|66043720|ref|YP_233561.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae B728a] gi|63254427|gb|AAY35523.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv. syringae B728a] gi|330971683|gb|EGH71749.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 239 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 19/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVTQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|71280059|ref|YP_267997.1| 16S ribosomal RNA methyltransferase RsmE [Colwellia psychrerythraea 34H] gi|71145799|gb|AAZ26272.1| conserved hypothetical protein TIGR00046 [Colwellia psychrerythraea 34H] Length = 244 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 29/253 (11%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 R+F + S D + ++ VLR+KEGD I LFNG++ ++ + + V KS Sbjct: 5 RIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSAD 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 KV Q + ++ ++ I + +R+D+ +QKSVE+G+ I P+ T N + Sbjct: 65 VKVTSQEENNSESPLNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERC-GVKLNAE 123 Query: 126 RV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R+ + ISA EQ ++P + P LL +W ET + +L Sbjct: 124 RLEKKRQQWQKIVISACEQSGRASVPIVAEP----MLLADW-------LKQETSALKINL 172 Query: 179 --EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + H+I +P V +LIGPEGG EE + F L LGPR+LR++TAA+ Sbjct: 173 HPKAQHSIMSLPMENTRVRLLIGPEGGLSDEEITQANDSDFHDVL-LGPRVLRTETAALT 231 Query: 233 AMALVQAICGDWY 245 A+ +Q GD + Sbjct: 232 AITALQCRFGDLH 244 >gi|330721278|gb|EGG99366.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC2047] Length = 241 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 22/248 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R+F+D PL Q + + HYL VLR+ + +FNG+ GE+ ++I K ++ Sbjct: 3 IPRIFIDLPLNEHQQVELPRETSHYLNRVLRLPVDAQLRVFNGQGGEYQAQICAANKNAV 62 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + + + + + + K +R+D+++QK+ E+G I+ + Y++ T + Sbjct: 63 SLAIGAFSAEDNSSPLHIHLGIALSKGDRMDFVVQKATELG---IKEISLLYSERTEVKL 119 Query: 125 DRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 R ISA EQC +P I+ PT L L+ +++ G++ Sbjct: 120 KGEREEKRLQHWQKVAISACEQCASNHVPTIHAPTPLNQWLEERHETVKLIMQP---GTD 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ + VA+L+GPEGG+ E + F LSLGPRILR++TA + A++ Sbjct: 177 QPFKQ----DNPGKVALLVGPEGGFSESEVNAANQAGF-NNLSLGPRILRTETAPLVAIS 231 Query: 236 LVQAICGD 243 ++Q GD Sbjct: 232 ILQHHWGD 239 >gi|330446905|ref|ZP_08310556.1| ribosomal RNA small subunit methyltransferase E [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491096|dbj|GAA05053.1| ribosomal RNA small subunit methyltransferase E [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 243 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 30/246 (12%) Query: 15 PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 P + +QGK S D +++ V+RM+ G +L+F+G D E+ + I+ K +VE Q Sbjct: 9 PESLPSQGKVMLSDDAANHVGRVMRMQAGQELLMFDGSDAEFPAVITSASKK-SVEVEIQ 67 Query: 73 SRSQ-TKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123 SR + + +S + + + +++++ IQKSVE+G+ I P+I+ + Sbjct: 68 SRVEHSVESPLNIHLGQVISRGDKMEFTIQKSVELGVSTITPLISERCGVKLNAERFEKK 127 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKL 181 +D+ + I+A EQC +P I P LE W C A+E G + +L Sbjct: 128 LDQWQKIAIAACEQCGRNVVPTIRPVMKLE----QW---C----AEEYDGLKLNLHPRAK 176 Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++I +P NV +LIGPEGG +EE F L LGPR+LR++T A+ A+ + Sbjct: 177 YSINTLPTPVTNVRLLIGPEGGLSAEEIGMTEEYKFDEIL-LGPRVLRTETTAMTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|254482677|ref|ZP_05095915.1| conserved hypothetical protein TIGR00046 [marine gamma proteobacterium HTCC2148] gi|214037036|gb|EEB77705.1| conserved hypothetical protein TIGR00046 [marine gamma proteobacterium HTCC2148] Length = 243 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 29/229 (12%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQYIFS 87 +LA LRM+E ++LF+G+ GE+ + I+ VGK + Q +S + S Sbjct: 26 QHLARALRMQEAGQLILFDGRGGEYPATITSVGKKCVSVLTGQRHDIEVESPLAIHLGIS 85 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCDI 140 + R+D++IQK+ E+G+ + P++T T+ DR + ISA EQC Sbjct: 86 ISRGERMDWVIQKATELGVTHVSPLLTERTE-VKLKADRAEKKRQHWQQIAISACEQCGR 144 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGG 199 LP I P T L L + ++V + E L A + P ++ +LIGPEGG Sbjct: 145 NRLPVINPLTLLPKWLNDSQAELKLVL-------HHRAENLSAQSTPPRSIDLLIGPEGG 197 Query: 200 Y-----HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 H E+ H+ L LG R+LR++TA +AA++++QA GD Sbjct: 198 LSPDEIHLAEQRAFHA------LRLGDRVLRTETAPLAALSILQARWGD 240 >gi|208779920|ref|ZP_03247264.1| conserved hypothetical protein [Francisella novicida FTG] gi|208744375|gb|EDZ90675.1| conserved hypothetical protein [Francisella novicida FTG] Length = 242 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 14/225 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IKT + +IQK+ E+G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + A N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSSA---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 PEGG+ +E HS F T ++LG RIL+++TA + ++++ + Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFV 240 >gi|304313284|ref|YP_003812882.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1] gi|301799017|emb|CBL47260.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1] Length = 248 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R+F + PL T+ + H++ VLRMK GD +LLFNG GE+ +I GK + Sbjct: 3 IPRIFQEIPLLEGTKVTLTESGSHHVTQVLRMKPGDQVLLFNGTGGEYFGEIEATGKRGV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + Y + ++ I K R DY IQK+VE+G+ I P+ +R + Sbjct: 63 EVLLTYFNEVDRASPLSVHLGQVIGKGERFDYAIQKAVELGVTEITPLFSRRCEVKLNGP 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + + ++A EQ + +P I+ P L W Q A +E Sbjct: 123 RLDKKLQQWKHLAVAACEQSGLNIIPQIHAPVA----LAEWAETVQ-ADARWILHTEGEP 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++A +GPEGG+ E ++ F +S+GPRI R++TA V ++L+Q Sbjct: 178 HNPFTQQAPQSLAFAVGPEGGFEDTEVSSVRERGFDC-VSMGPRIWRTETAPVVMLSLLQ 236 Query: 239 AICGD 243 GD Sbjct: 237 YHWGD 241 >gi|56750741|ref|YP_171442.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus PCC 6301] gi|81299617|ref|YP_399825.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus PCC 7942] gi|56685700|dbj|BAD78922.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168498|gb|ABB56838.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 243 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 20/246 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L+RL++ + + DQ HYL VLR+K GD + +G+ G W +++ + Sbjct: 4 ELRRLWLPPEQLQGDRWSLTADQRHYLQRVLRLKPGDRCAVIDGQGGLWTAELG--DRDQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYN 123 F V Q + I S + D +I+++ E+G+ I+PVI+ +Q Sbjct: 62 LFPVGAVPVLPPAQPRLTLIQS-LPKQGFDEVIRQATELGVTTIQPVISDRSQVRPEAQK 120 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---TCGSENSLEK 180 DR R I A+EQ + L LP + P ++ W + AD C + SL Sbjct: 121 TDRWRKIAIEASEQSERLYLPQLEP-------IRLWSEAIAQIPADSLRCICLARRSLPN 173 Query: 181 ----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L A ++AI IGPEGG+ E E ++ + TP+SLG ILR+ TA + A++L Sbjct: 174 LLPWLQAQPAWTDLAIAIGPEGGWSDAEIEQAIAVGW-TPVSLGSSILRAVTAPIVALSL 232 Query: 237 VQAICG 242 QA+ Sbjct: 233 AQAVAA 238 >gi|319787981|ref|YP_004147456.1| hypothetical protein Psesu_2392 [Pseudoxanthomonas suwonensis 11-1] gi|317466493|gb|ADV28225.1| protein of unknown function DUF558 [Pseudoxanthomonas suwonensis 11-1] Length = 243 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V+ PL + ++L VLR++EG++ +LFNG ++ ++++ V K Sbjct: 2 RLTRCHVELPLQPGSTITLPEHAANHLVRVLRLREGESCVLFNGDGHDYAARLASVTKRE 61 Query: 66 RFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + +S ++ + + ++D ++QK+ E+G+ AI PV T+ + Sbjct: 62 VSAEVLSATAVDNESPLRIVLLQGIARGEKMDLILQKATELGVAAIVPVNGERTE-VRLD 120 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R R+ SA EQ +P + PP +LE + + D E+ Sbjct: 121 AERAQKRLAHWRSVVESACEQSGRARVPEVQPPASLETAAATLPGDALRLLLDPQ--GEH 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + A V + IGPEGG+ +++ L + F + L LGPR+LR++TA +AA+A Sbjct: 179 RLASMQPDAS--TVVVAIGPEGGWSPRDRQALQAAGF-SGLRLGPRVLRTETAGLAAIAA 235 Query: 237 VQAICGD 243 +QA GD Sbjct: 236 LQARFGD 242 >gi|167627639|ref|YP_001678139.1| 16S ribosomal RNA methyltransferase RsmE [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597640|gb|ABZ87638.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 241 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 16/231 (6%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQT 77 T+ +G+ Y+Y +VLR+K+ D I LFN DG ++ ++I + K+I +V + Sbjct: 16 TKLSITGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKAQIIDINNKNILLEVIEKKEIHN 75 Query: 78 KQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTY 130 + + I+ IK +++IQK+ E+G+ I P+IT YT + ++R Sbjct: 76 ENKYIVNIYQAIIKNENFEFIIQKATELGVNNIYPIITEYTNHKFDKKGFDKKLERWNKI 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN- 189 I+AAEQC + +P I+ P + N H C N+ E + + Sbjct: 136 AIAAAEQCGRVFIPKIHNPIEI-----NSIHLSDSYMNIALCPYSNTPENFENLIKTHDK 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 I IGPEGG+ ++E E + F T ++LG RIL+++TA V+ +A++ + Sbjct: 191 FNIFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPVSILAIINFV 240 >gi|288939950|ref|YP_003442190.1| hypothetical protein Alvin_0191 [Allochromatium vinosum DSM 180] gi|288895322|gb|ADC61158.1| protein of unknown function DUF558 [Allochromatium vinosum DSM 180] Length = 248 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 17/250 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L RL VD L + Q + VLR++ ++LFNG ++ + + G+ Sbjct: 2 RLTRLHVDLDLRPGAEIDLPSAQARHAVQVLRLERDAPLVLFNGDGHDYSACLVEPGRD- 60 Query: 66 RFKVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 R +V +SR + + D+ K R+D+ IQK+VE+G+ I P+ TR Q Sbjct: 61 RVRVLVESRGDPELESRLDIHLALGISKGERMDFAIQKAVELGVTRITPLFTRRAQVRLD 120 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGS 174 ++ + ++A EQ LP + P LE L+ + D + D + Sbjct: 121 GARLDKRLEHWQGVVVAACEQSGRRRLPTLEPAGGLEAWLETAHGDGFAGGLLLDPL--A 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E +L L A + +LIGPEGG E+E F + LGPRILR++TA +AA+ Sbjct: 179 ERALPALPAPES--GLTLLIGPEGGLDPREREAARRHGFQG-VRLGPRILRTETAPLAAI 235 Query: 235 ALVQAICGDW 244 A++QA+ GD+ Sbjct: 236 AVIQALWGDF 245 >gi|205374146|ref|ZP_03226946.1| 16S rRNA m3U1498 methyltransferase [Bacillus coahuilensis m4-4] Length = 248 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 13/227 (5%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQS 80 + GD +H++ V+RMKEGD+ L + + KI + VE++ S Sbjct: 15 RVKGDDFHHMIRVMRMKEGDSFLSVFQDNKSAICKIEEISNDSLTASVVEWELNSTEMPV 74 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + K ++L+ +IQK E+G A R ++ + H ++R A Sbjct: 75 RITIVSGLPKGDKLESIIQKGTELGATEFIPFKATRSIVKWDDKKAHKKIERFEKIAKEA 134 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSL--EKLHAIAHIPNV 190 AEQ T+PFI P TL+ +L+ N + F +E E+S E+L + + ++ Sbjct: 135 AEQSHRRTIPFISEPKTLKQILQTVPSNAVKLVAFEEEAKQGESSQFKEELQKVQNGDHI 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ GPEGG EE L + F++ LGPRILR++TA + A+A + Sbjct: 195 MMIFGPEGGLTEEEVHELKNHDFIS-CGLGPRILRTETAPLYALAAI 240 >gi|108760347|ref|YP_629393.1| hypothetical protein MXAN_1133 [Myxococcus xanthus DK 1622] gi|108464227|gb|ABF89412.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK 1622] Length = 244 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 7/226 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLF P + + +G++ HYL HVLR++EGD + +F+GK + +++++V + Sbjct: 3 RLFAPLPEPAPAEVELTGERRHYLLHVLRLEEGDALEVFDGKGRAFEARVAHVTPDVVRV 62 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 +R + +V + K ++L+ ++QK E+G A PV T + + Sbjct: 63 TLGTARVAPPRREVSILQGLPKGDKLELVLQKGTELGATAFHPVATARSVVKLEPKRAEE 122 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 R AA QC +P + P L ++ ++ DE + E Sbjct: 123 RTSRWTKIVEEAARQCRRDDVPRVATPAPLLDAARSLTAGTVLLVLDEEESAVPLGEAFR 182 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A VA++IGPEGG EE + L +L P++LG RILR++T Sbjct: 183 AAGAGTAVALVIGPEGGLAREEVDALMAL-GARPVTLGKRILRTET 227 >gi|15836795|ref|NP_297483.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa 9a5c] gi|9104989|gb|AAF83003.1|AE003872_14 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 244 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 20/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 I E + S + VQ I + ++D + QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAIA---RGEKMDLIAQKATELGVVAIVPVDTERS-GV 117 Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + +RV ISA EQC +P + P L+ L + + + D Sbjct: 118 RLDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQALPEILHPDTLRLILDPK-- 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 SE+ L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A Sbjct: 176 SEHRLSTLSRLTPV-AVTIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233 Query: 234 MALVQAICGD 243 +A++QA GD Sbjct: 234 IAVLQAQLGD 243 >gi|269965751|ref|ZP_06179848.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829619|gb|EEZ83856.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 243 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 26/233 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRMKEG ++LLF+G E+ + IS V K +I +VE S Sbjct: 21 SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKSVLVNITERVESSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130 Q I + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 134 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 ISA EQC +P I P +LE + ++ S N+L + V Sbjct: 135 AISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINTLP-----TPVEKV 189 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG SEE E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 190 RLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|315127638|ref|YP_004069641.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913] gi|315016152|gb|ADT69490.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913] Length = 244 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 20/240 (8%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQ 72 P+ + T D ++ VLRMK G+ + +FNG+ GE+LS+I V K + +E+ Sbjct: 11 PIALNTPLNLDDDAAGHVGRVLRMKVGEQVSMFNGEGGEFLSEIIEVSKKTVVVMPLEFN 70 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV----- 127 + + +++D+ IQKSVE+G+ I P+ ++ + DR+ Sbjct: 71 PHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRC-GVKLSGDRLEKKHQ 129 Query: 128 --RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 + I+AAEQ +P I PP L+ L+ ++ +E+S++ + Sbjct: 130 QWQKIAIAAAEQSGRNFVPIINPPVDLKHWLEQQTDAIKLTLHPR---AEHSIKTI---- 182 Query: 186 HIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +P+ V L+GPEGG+ +E FV + LGPR+LR++TAA+ ++ +Q GD Sbjct: 183 TVPDGGVRFLVGPEGGFTDDEMAQTKQQEFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241 >gi|91228680|ref|ZP_01262594.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01] gi|91187751|gb|EAS74069.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01] Length = 243 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 26/233 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRMKEG ++LLF+G E+ + IS V K +I ++E S Sbjct: 21 SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKSVLVNITERLENNIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130 Q I + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 134 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 ISA EQC +P I P +LE K ++ S N+L + V Sbjct: 135 AISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRAKYSINTLP-----TPVEKV 189 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG SEE E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 190 RLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|325922372|ref|ZP_08184146.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865] gi|325547154|gb|EGD18234.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 18/249 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITLAGKRE 61 Query: 66 RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + +++ +S + I + ++D ++QK+ E+G+ AI PV + T Sbjct: 62 ARAMLERAQPLCNESPLSITLIQGIARGEKMDLILQKATELGVAAIVPV---NAERTEVK 118 Query: 124 MD------RV---RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D RV R+ ISA EQ +P + P L+ + D + + D Sbjct: 119 LDPARMEKRVTHWRSVVISACEQSGRARVPTVAAPLGLQDAAQASDPHALRLTLDPH--G 176 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+ L L +A V + IGPEGG+ ++ L F + L LGPRILR++TA +AA+ Sbjct: 177 EHRLATL-PVAAQQRVIVAIGPEGGWSPRDRAILGEAGF-SGLQLGPRILRTETAGLAAI 234 Query: 235 ALVQAICGD 243 A +Q+ GD Sbjct: 235 AALQSRFGD 243 >gi|326797241|ref|YP_004315061.1| ribosomal RNA small subunit methyltransferase E [Marinomonas mediterranea MMB-1] gi|326548005|gb|ADZ93225.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas mediterranea MMB-1] Length = 243 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 19/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++VD L T+ + + VLR+KEG I+LFNG GE+ + + V K Sbjct: 3 IPRIYVDIDLTEHTEIILPDSAFQHCCKVLRLKEGHAIILFNGDGGEYDATLYNVQKRAA 62 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 R +S ++ S + R+DY IQK+VE G+ I+P+ + + Sbjct: 63 SAQLTTYRVLENESPLKVTIGQSLSRGERMDYAIQKAVESGVFRIQPLFSERCE-VKLQE 121 Query: 125 DRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 DR+ + ISAAEQC +P I P L +W C + + +S Sbjct: 122 DRMEKRLKHWQQVAISAAEQCGRGVVPKILEPIN----LLDWVEKCNEML--KITLHHHS 175 Query: 178 LEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +H P ++A+LIGPEGG E E F + ++LGPR+LR++TA V A+ Sbjct: 176 AKPIHDFERPPENSIALLIGPEGGLTDIEVEKASLFGFQS-IALGPRVLRTETAPVVALT 234 Query: 236 LVQAICGD 243 + + GD Sbjct: 235 TLNLMWGD 242 >gi|118594425|ref|ZP_01551772.1| hypothetical protein MB2181_02115 [Methylophilales bacterium HTCC2181] gi|118440203|gb|EAV46830.1| hypothetical protein MB2181_02115 [Methylophilales bacterium HTCC2181] Length = 246 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 25/230 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR-SQTKQSD--VQYIF 86 H+ +V+R+K D I+LFN ++ ++I + K+ R +V QS+ + K SD ++ I Sbjct: 24 HHATNVMRLKLSDKIILFNNDVYDFGAEIIRISKN-RVEVVIQSKIANRKDSDLKIRLIQ 82 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCD 139 S T ++D++IQKSVE+G+ I P+ ++ + N DR + SA EQC Sbjct: 83 SISSTEKMDWIIQKSVELGVHTIVPIFSQRSI-IKLNNDRAEKKLSHWKQIIQSACEQCG 141 Query: 140 ILTLPFIYPPTTLEFL-----LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193 +P I+ P + + N DH I+ + ++NS + I P+ + I+ Sbjct: 142 RSKVPEIFIPKKFDAFWSNETISNKDHLKLIL----SPLAKNSFRTISTIK--PSAIDIM 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ EE F+ P +GPRILR++TA +A +AL+Q GD Sbjct: 196 IGPEGGFSEEEVVNAEKNGFI-PFEIGPRILRTETAPLAMLALLQYKYGD 244 >gi|88705487|ref|ZP_01103198.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88700577|gb|EAQ97685.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 245 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 25/228 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS--DVQYIFS 87 ++A LRM+ GD++ LF+G E +IS + KS + + T++S D I + Sbjct: 26 RHIAKALRMRAGDSLCLFDGSGIEAHGEISDLDKSQVSVIVKSIQQPTRESPLDTVLIIA 85 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQC 138 + +R+D ++QK+ E+G+ I P+I+ + T +D R ISA EQC Sbjct: 86 LSRGDRMDTVVQKATELGVTEIWPMIS---ERTGVRLDETRLARKRQHWERIAISACEQC 142 Query: 139 DILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 LP + PT+ E L+ D + +++ T + L H ++ +L+G Sbjct: 143 GRNRLPTVETPTSFEETLQRAAKGDDSLRLIL--HTSAHPSPLP-----THCKSLTLLVG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ EE F L +GPRILR++TA + +AL QA GD Sbjct: 196 PEGGFSDEEVTAALDQGFCA-LQMGPRILRTETAPLVGLALAQARWGD 242 >gi|303238634|ref|ZP_07325167.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2] gi|302593753|gb|EFL63468.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2] Length = 247 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 14/248 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ +G+ Y+++ VLR+K + + L +G E++++I G Sbjct: 1 MPRFFINSKDVFDDNINITGEDYNHIKKVLRLKCEEIVTLSDGIGNEYVAEIKDFGDGFV 60 Query: 67 FKVEYQSRSQTKQSDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +S T + ++ Y P K++++D++IQKSVE+G+ I PV+T T Sbjct: 61 HTKVIESYKNTTEPPIKVTLYQGLP-KSDKMDFIIQKSVELGISRIVPVLTERTVVRLDS 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ +R + AA+QC+ +P I P + + +K H+ + S+N Sbjct: 120 EKDAAKKCERWNRISQEAAKQCNRGIIPKIEVPISFKEAIKKV-HDVPLSLIPYEKESKN 178 Query: 177 SLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 SL++ L ++ I V++ IGPEGG+ +E E + + ++LGPRILR++TA + + Sbjct: 179 SLKQILKSVGDISEVSVFIGPEGGFTEQEIEEAVNCGL-SSVTLGPRILRTETAGITVLT 237 Query: 236 LVQAICGD 243 ++ GD Sbjct: 238 ILMYELGD 245 >gi|254373211|ref|ZP_04988700.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570938|gb|EDN36592.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 242 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 14/225 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IKT + +IQK+ E+G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 PEGG+ +E HS F T ++LG RIL+++TA + ++++ I Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240 >gi|148266299|ref|YP_001233005.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter uraniireducens Rf4] gi|146399799|gb|ABQ28432.1| protein of unknown function DUF558 [Geobacter uraniireducens Rf4] Length = 246 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 15/230 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 SGD + ++A VLR+K G +++L +G E I+ VG KS+ +VE + T + + Sbjct: 19 SGDLFRHMAKVLRLKAGTSVILADGAGRECTGVITAVGAKSLEIRVEEGPAAPTGDNGPR 78 Query: 84 ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISA 134 Y P K ++L++++QK E+G+ I P I + T Q ++R R A Sbjct: 79 ITLYQGMP-KGDKLEFIVQKCTELGVAEIVPFTAARSIAKVTHQRGMERIERWRRIATEA 137 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAIL 193 A Q T+P + L +L+ H+ +++ +E G N L++ + IP ++A+L Sbjct: 138 ARQSKRRTVPQVTLAENLSEVLQAAQHSVKLLLWEEEQG--NRLKETLSGLPIPESIAVL 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +GPEGG +EE + F+ PLSLG RI+R++TA + ++++Q GD Sbjct: 196 VGPEGGLTAEEAAAASACGFI-PLSLGKRIVRTETAGIIILSILQFYWGD 244 >gi|320450557|ref|YP_004202653.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01] gi|320150726|gb|ADW22104.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01] Length = 228 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 16/217 (7%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + +L VLR K GD +F+ D E L+++ +G +R+++ + R ++ V+ Sbjct: 19 ESRHLLEVLRAKVGDRFTVFD-VDREALAEVVELGPPVRYRI-LEERRPEREVGVEVALY 76 Query: 88 P--IKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142 P +K ++L +++ + E+G I+P++TR++ + + R++ + AA+Q L Sbjct: 77 PALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLKRLQAIAVEAAKQSGRLR 136 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + PP L L K V A L K ++A+ +GPEGG+ Sbjct: 137 VPEVLPPIPLNALPKVEQGMVAHVGARSLVREVLDLGK--------SLALAVGPEGGFAE 188 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EE E L F TP+ LG RILR++TAA+A +AL A Sbjct: 189 EEVELLQEKGF-TPVFLGRRILRAETAAIALLALCTA 224 >gi|332991913|gb|AEF01968.1| hypothetical protein ambt_02070 [Alteromonas sp. SN2] Length = 242 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 20/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ ++ + + + + H++A VLR+K I+LFNG E+ ++I + Sbjct: 2 RIPRIYYPNPIPLEEEFQLTEEAGHHIASVLRLKANHPIVLFNGDGNEYSAQIINAQRKK 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 F + +K+S + K +R+D ++QKSVE+G+ I P+++ + Sbjct: 62 VFVEADACLTLSKESSLNIHLGQGVSKGDRMDTVLQKSVELGVTEITPILS---ERCTVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I A EQ TLP + PP L L + ++V A G+ Sbjct: 119 LDEARWEKKLLQWQKIIIGACEQSGRNTLPSLNPPIALNKWLSESTSSSRLVLAP---GA 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L + + +LIGPEGG E + F T SLGPRILR++TAA++++ Sbjct: 176 EKPLARQPYNSQ--GFRLLIGPEGGLSEGEIHQANESGF-TSCSLGPRILRTETAAISSI 232 Query: 235 ALVQAICGDW 244 +++QA GD+ Sbjct: 233 SILQAQHGDF 242 >gi|254492173|ref|ZP_05105347.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxidans DMS010] gi|224462498|gb|EEF78773.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxydans DMS010] Length = 242 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 19/225 (8%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQS--DVQYI 85 + + VLR+K+G I LFNGK E+ + +++V + R + E + +Q +S ++ + Sbjct: 25 HRHAIQVLRLKQGARIQLFNGKGLEYQATLTHVERK-RSEAELGEQLTQASESPLNITLL 83 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQC 138 + R+D+ IQK+VE+G+ I PV+T N DR+ + +SA EQ Sbjct: 84 QGISRGERMDFAIQKAVELGVNQIIPVMTERC-NVQLKHDRIEKRLAHWQGVIVSACEQS 142 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 LP + ++ L + ++V + N L+ + +LIGPEG Sbjct: 143 GRAVLPTLSEVVDMQNALNSTADTMKLVLDPQAQTRFNDLQA------ATQLTLLIGPEG 196 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G +E + S F T + GPRILR++TA+ AA+A+VQ++ GD Sbjct: 197 GLTDDEVKMATSSGF-TAVQFGPRILRTETASTAALAVVQSLWGD 240 >gi|285018976|ref|YP_003376687.1| hypothetical protein XALc_2213 [Xanthomonas albilineans GPE PC73] gi|283474194|emb|CBA16695.1| hypothetical protein XALc_2213 [Xanthomonas albilineans] Length = 243 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 17/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-- 63 L R VD PL + + +L VLR++EGD +LFNG ++ +++ GK Sbjct: 2 RLTRCHVDLPLHTGAEVALPEEVAGHLLRVLRLREGDRCVLFNGNGCDYDAELLPTGKRG 61 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 S R V +++ + + + + ++D ++QK+ E+G+ AI P+ T Sbjct: 62 ASARIGVARPVDNESSLA-ITLLQGVARGEKMDLILQKATELGVSAIVPIWAERTEVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 Q T + R+ +SA EQ +P P + D C+++ + E Sbjct: 121 AQRTDKRVAHWRSVVVSACEQSGRARVPSLSAPLALADAARAAADSPCRLILDPQ---GE 177 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L I + + I IGPEGG+ ++ TL S F+ L LGPRILR++TA++AA+A Sbjct: 178 QRLRTLDFIGN--AITIAIGPEGGWSPRDRTTLESAGFLG-LRLGPRILRTETASLAAIA 234 Query: 236 LVQAICGD 243 +QA GD Sbjct: 235 ALQAHGGD 242 >gi|152998316|ref|YP_001343151.1| hypothetical protein Mmwyl1_4321 [Marinomonas sp. MWYL1] gi|150839240|gb|ABR73216.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1] Length = 248 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 34/258 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R+F+D L T + +L VLR+K I +FNG++ + GKS + Sbjct: 3 IPRIFIDSELNENTTIPLPDSAFQHLCKVLRLKSDHPIRVFNGQE--------FNGKSGQ 54 Query: 67 FKV---EYQSRSQTKQ-SDVQYIFS--PIKTN---------RLDYMIQKSVEMGMGAIRP 111 F + + RS +D + + + PI+ R+DY IQKSVE G+ AI+P Sbjct: 55 FNATLCDVEKRSANIHVADFEALNNEPPIQVTIGQTLSRGERMDYAIQKSVEAGVFAIQP 114 Query: 112 VITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI 165 + + + + ISAAEQC +P +YPP L + N + ++ Sbjct: 115 LFSERCEVKLQDGRAEKRQQHWQQIAISAAEQCGRGVVPIVYPPMGLSEWVANCNEMLKL 174 Query: 166 VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + EK VA+LIGPEGG +E + F ++LGPR+LR Sbjct: 175 TLHHHSAKPIRQYEK----PANNQVALLIGPEGGLTEKEVQLSEKSGF-NAITLGPRVLR 229 Query: 226 SDTAAVAAMALVQAICGD 243 ++TA + A++++ A+ GD Sbjct: 230 TETAPIVALSVINALWGD 247 >gi|302877374|ref|YP_003845938.1| hypothetical protein Galf_0129 [Gallionella capsiferriformans ES-2] gi|302580163|gb|ADL54174.1| protein of unknown function DUF558 [Gallionella capsiferriformans ES-2] Length = 243 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 20/250 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 + R + P+ + D H+ + VLR++EGD++ LF+G E+ I+ GK + Sbjct: 1 MPRFYCPPPIPAQGAFNLPADAAHHASRVLRLREGDSVQLFDGTGHEYHGAITDMTGKQV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + ++S +Q + + + ++D++IQK+ E+G I+P+ T + + Sbjct: 61 VVG-DIVHIEADRESPLQIVLAQALCSSEKMDWVIQKATELGATEIQPLATGRS-VAKLS 118 Query: 124 MDRVRTYT-------ISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGS 174 DR T ISA EQC LP I+PP + L++ + + + S Sbjct: 119 ADRAAKRTEHWQQVAISACEQCGRNVLPVIHPPVEIGTWLQHMLDSDMSKYILLPQGAKS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 EK + +LIG EGG+ E + F TP+ LG R++R++TAAVA + Sbjct: 179 LQEQEKPQS-----GAVLLIGAEGGFTEAESDNALRCGF-TPVRLGARVMRTETAAVAGL 232 Query: 235 ALVQAICGDW 244 A++Q + GD+ Sbjct: 233 AVLQTLWGDF 242 >gi|153835274|ref|ZP_01987941.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156975827|ref|YP_001446734.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116] gi|148868249|gb|EDL67389.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156527421|gb|ABU72507.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116] Length = 243 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 34/237 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D ++ VLRMKEG +LLF+G E+ + IS V K VE R ++ Sbjct: 21 SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKK-NVMVEISERVESS------ 73 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128 I SP+ + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 74 IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130 Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ISA EQC +P I P +LE + ++ S N+L Sbjct: 131 WQKIAISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG S+E + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 186 VEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|262273734|ref|ZP_06051547.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae CIP 101886] gi|262222149|gb|EEY73461.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae CIP 101886] Length = 243 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R+F PL + S D +++ VLRM+ G +LLF+G E+ + I+ G KS Sbjct: 2 RIPRIFHPEPLPDTGRVALSDDAANHVGRVLRMQAGQEVLLFDGSGAEFPAVIAESGKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + V E RS D+ + +++++ IQKSVE+G+ I P+I+ N Sbjct: 62 VTVDVAERVERSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNVITPLISERC-GVKLN 120 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 DR + I+A EQC +P + P +L+ ++ ++ S N Sbjct: 121 ADRFDKKWQQWQKIAIAACEQCGRNIVPEVRPVMSLDAWMQEPFDGLKLNLHPRAKYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + +LIGPEGG SEE F L LGPR+LR++TAA+ A+ Sbjct: 181 TLPE-----PVSRLRLLIGPEGGLSSEEIARTRKFGFEETL-LGPRVLRTETAALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|118497856|ref|YP_898906.1| hypothetical protein FTN_1271 [Francisella tularensis subsp. novicida U112] gi|194323829|ref|ZP_03057605.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|118423762|gb|ABK90152.1| conserved protein of unknown function [Francisella novicida U112] gi|194322193|gb|EDX19675.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|332678571|gb|AEE87700.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf. novicida Fx1] Length = 242 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 14/225 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IK+ + +IQK+ E+G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 PEGG+ +E HS F T ++LG RIL+++TA + ++++ I Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240 >gi|254508609|ref|ZP_05120725.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] gi|219548460|gb|EED25469.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] Length = 225 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 22/231 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDV 82 S D ++ VLRMKEG ++LLF+G E+ + IS V K + V E RS D+ Sbjct: 3 SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPATISSVTKKHVEVDVTERIERSAESPLDL 62 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTIS 133 + +++++ IQKSVE+G+ I P+I ++ +D+ R IS Sbjct: 63 HLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKIAIS 119 Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A EQC T+P I P L E+ +++D ++ S N+L + V + Sbjct: 120 ACEQCGRNTVPEIRPIMQLEEWCAEDYD-GLKLNLHPRAKYSINTLP-----TPVEKVRL 173 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 LIGPEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 174 LIGPEGGLSAEEIGMTEEYKFEETL-LGPRVLRTETAALTAITALQVRFGD 223 >gi|163803743|ref|ZP_02197601.1| hypothetical protein 1103602000580_AND4_13698 [Vibrio sp. AND4] gi|159172462|gb|EDP57330.1| hypothetical protein AND4_13698 [Vibrio sp. AND4] Length = 243 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 22/229 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQYI 85 D ++ VLRMKEG ++LLF+G E+ + IS V K VE R++ +S + Sbjct: 23 DAASHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKK-NVLVELSERTENSIESPLDLH 81 Query: 86 FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISA 134 F + + +++++ IQKSVE+G+ I P+I ++ +D+ R ISA Sbjct: 82 FGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKIAISA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P +LE + ++ S N+L + V +LI Sbjct: 139 CEQCGRNIVPEIRPIMSLEAWCQEEYDGLKLNLHPRAKYSINTLP-----TPVKKVRLLI 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG E + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 194 GPEGGLSCSEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|21672668|ref|NP_660735.1| hypothetical protein BUsg395 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009589|sp|Q8K9E4|RSME_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|21623305|gb|AAM67946.1| hypothetical 26.9 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 246 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 17/251 (6%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + + R+++ + L I S HY+ VLRMK+ D + +FN + + S+I + Sbjct: 1 MKKRIPRIYIKYFLQINQVISLSKSYTHYIKKVLRMKKKDKLEIFNNTNYIFFSEILEIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--Q 118 + + + + +S + + K ++++ IQKSVE+G+ I P+ + Y Q Sbjct: 61 NHTIEIIILKKQIKNLESPLLIHLGQVISKNEKMNFSIQKSVELGVNTITPLFSEYCNFQ 120 Query: 119 NTHYNMDRVRTY----TISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCG 173 N + + + IS+ EQC +P I P L + + +++ +IVF+ Sbjct: 121 NKLICFPKKKIHWENIVISSCEQCHRNNIPEIKNPEYILPWCKRTYENETKIVFSPSATF 180 Query: 174 SENSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + N L EK++ V +LIG EGG+ E E + F+ P+ LGPRILR++TA +A Sbjct: 181 TINELPEKINC------VRLLIGSEGGFSFLEIEKIIQYGFI-PIKLGPRILRTETAVIA 233 Query: 233 AMALVQAICGD 243 A+ +Q GD Sbjct: 234 AITALQIKFGD 244 >gi|260888226|ref|ZP_05899489.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC 35185] gi|330838435|ref|YP_004413015.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas sputigena ATCC 35185] gi|260862060|gb|EEX76560.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC 35185] gi|329746199|gb|AEB99555.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas sputigena ATCC 35185] Length = 261 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 126/249 (50%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R+F++ + + G H+L V+R K G+ +L+ +G G ++++ Sbjct: 1 MRRVFLEGEIADTME--VRGADAHHLQRVMRAKLGEKLLVADGAGGSAEAEVAGFADGRV 58 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQ 118 +RF V S + Q++++ K +R+D+++QK+ E+G+ IRPV++ RY + Sbjct: 59 QLRF-VRRLSEAAESQAEIELFQCLPKGDRMDFIVQKTTELGVACIRPVLSQNVVVRYDE 117 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGS 174 ++R + AA+QC +P + P L ++ ++ ++ F + Sbjct: 118 KKARARVERWQKIAAEAAKQCGRTRIPEVMPIVPLRAAMEGQGAAEYALRLFFYEME--E 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + + + + +L+GPEGG+ E + + F + ++LG RILR DTAA+ A+ Sbjct: 176 RRELRTVLSDSEARRIFMLVGPEGGFDEAEAQLAVAHGF-SAVTLGRRILRVDTAAIVAL 234 Query: 235 ALVQAICGD 243 ALVQ GD Sbjct: 235 ALVQYEKGD 243 >gi|269960438|ref|ZP_06174811.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834865|gb|EEZ88951.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 243 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 34/237 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D ++ VLRMKEG +LLF+G E+ + IS V K VE R ++ Sbjct: 21 SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKK-NVMVEISERVESS------ 73 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128 I SP+ + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 74 IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130 Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +SA EQC +P I P +LE + ++ S N+L Sbjct: 131 WQKIAVSACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG S+E + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 186 VEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|254374666|ref|ZP_04990147.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572385|gb|EDN38039.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 242 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 14/225 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IK+ + +IQK+ E+G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 PEGG+ +E HS F T ++LG RIL+++TA + ++++ I Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240 >gi|226952621|ref|ZP_03823085.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] gi|226836610|gb|EEH68993.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] Length = 239 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 21/242 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + + +H+ VLR KE + + FNGK GE+L ++ + K Sbjct: 1 MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTVINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 Q + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120 Query: 124 -----MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSE 175 +D R+ I+A EQC + +P I P +L +K+ + V A D+T Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 NS P++A+LIGPEGG E ET + F +G R+LR++TA V A++ Sbjct: 181 NS---------TPDIALLIGPEGGLSETEIETANQYQFKN-WCIGDRVLRTETAPVVALS 230 Query: 236 LV 237 ++ Sbjct: 231 IL 232 >gi|148980482|ref|ZP_01816079.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3] gi|145961207|gb|EDK26521.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 20/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81 D ++ VLRMKEG +LLF+G E+ + I+ V K ++ ++E S S Sbjct: 23 DAAGHVGRVLRMKEGQEVLLFDGSGTEFPATIAEVSKKNVTVNVTERIERSSESPLDLHL 82 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 Q I + +++++ IQKSVE+G+ I P+I+ + + + + I+A Sbjct: 83 GQVIS---RGDKMEFTIQKSVELGVNTITPLISERCGVKLDAKRFEKKLAQWQKIAIAAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC T+P I P LE ++ S N+L + I V +LIG Sbjct: 140 EQCGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PISKVRLLIG 194 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 195 PEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|78044093|ref|YP_359279.1| hypothetical protein CHY_0418 [Carboxydothermus hydrogenoformans Z-2901] gi|77996208|gb|ABB15107.1| conserved hypothetical protein TIGR00046 [Carboxydothermus hydrogenoformans Z-2901] Length = 248 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 128/237 (54%), Gaps = 16/237 (6%) Query: 19 KTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR 74 +TQG +GD ++A VLR+K G+ + L + ++ +L ++ V K ++ K+ + + Sbjct: 10 QTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLVQLKILEKKK 69 Query: 75 SQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRV 127 T+ +V + K +++D+++QK+ E+G+ I PV T T + +R Sbjct: 70 VVTRPPVNVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVVFDERKKKDRCERW 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAH 186 + AA+Q + +P I+P L+ L + + I+ E G E SL++L Sbjct: 130 QKIAYEAAKQAGVSRVPEIFPVIDLK-ALPEFISDALILVPYE--GEEQTSLKQLLNKEA 186 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + NV ++IGPEGG+ E E L S VT +SLGPRILR++TAA+A +++V GD Sbjct: 187 VKNVTVIIGPEGGFDPGEIEYLKSFGAVT-VSLGPRILRTETAALAVLSMVLYQWGD 242 >gi|86146407|ref|ZP_01064731.1| hypothetical protein MED222_22541 [Vibrio sp. MED222] gi|85835886|gb|EAQ54020.1| hypothetical protein MED222_22541 [Vibrio sp. MED222] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 20/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81 D ++ VLRMKEG +ILLF+G E+ + I+ V K ++ ++E S S Sbjct: 23 DAAGHVGRVLRMKEGQDILLFDGSGAEFPATIAEVSKKNVTVNVTERIERSSESPLDLHL 82 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 Q I + +++++ IQKSVE+G+ I P+I+ T+ + + + I+A Sbjct: 83 GQVIS---RGDKMEFTIQKSVELGVNTITPLISERCGVKLDTKRFEKKLAQWQKIAIAAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ T+P I P LE ++ S N+L + I V +LIG Sbjct: 140 EQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PISKVRLLIG 194 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 195 PEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|323493586|ref|ZP_08098707.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG 20546] gi|323312109|gb|EGA65252.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG 20546] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 36/238 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82 S + ++ VLRMKE +LLF+G E+ + IS V KS+ V E RS D+ Sbjct: 21 SEEAAGHVGRVLRMKEEQQVLLFDGSGAEFPATISEVSKKSVEVNVIERIERSSESPLDL 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + +++++ IQKSVE+G+ I P+I+ + + + + ISA E Sbjct: 81 HLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDHKRFEKKLAQWQKIAISACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIP- 188 QC T+P I P LE E CG E KL ++I +P Sbjct: 141 QCGRNTVPEIRPIMQLE----------------EWCGEEYDGLKLNLHPRAKYSINTLPT 184 Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 185 PVEKVRLLIGPEGGLSAEEISMTENYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|28899384|ref|NP_798989.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus RIMD 2210633] gi|153839188|ref|ZP_01991855.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|260366255|ref|ZP_05778714.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus K5030] gi|260878928|ref|ZP_05891283.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AN-5034] gi|260898271|ref|ZP_05906767.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus Peru-466] gi|260903375|ref|ZP_05911770.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AQ4037] gi|28807620|dbj|BAC60873.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747290|gb|EDM58274.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|308085866|gb|EFO35561.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus Peru-466] gi|308090439|gb|EFO40134.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AN-5034] gi|308107481|gb|EFO45021.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AQ4037] gi|308113508|gb|EFO51048.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus K5030] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 34/237 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D ++ VLRMKEG +LLF+G E+ + IS V K V+ R ++ Sbjct: 21 SEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKK-NVLVDVTERVESN------ 73 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128 I SP+ + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 74 IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130 Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ISA EQC +P I P +LE + ++ S N+L Sbjct: 131 WQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG SEE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 186 VEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|238897814|ref|YP_002923493.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465571|gb|ACQ67345.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 243 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 20/248 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ +P TQ + S + H++ VLRMK G ++ LF+ + + I + K Sbjct: 3 IPRIYHPYPFFAHTQIELSEEAAHHVIRVLRMKPGQSLYLFHDSNDIIQANIIRIDKK-- 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 KV Q + +++ ++ + ++ +++Y +QKSVE+G+ ++ P+ + Sbjct: 61 -KVYVQLKEAILKNNESPLYLHLGQVICRSEKMEYTLQKSVELGVHSVTPLFSERCGVKI 119 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + + + ISA EQC +P IY L + D++ ++ F + Sbjct: 120 DGERLQKKIQQWKKIAISACEQCGRNKIPKIYNALPLHNWCAHQDNSLKLNFVPKANNRI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L I + V ILIGPEGG ++E F+ P+SLGPR+LR++T A+ A+ Sbjct: 180 NTL-----IPPVSRVRILIGPEGGLSNDEIAMAADYEFL-PISLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|282896925|ref|ZP_06304931.1| conserved hypothetical protein [Raphidiopsis brookii D9] gi|281198334|gb|EFA73224.1| conserved hypothetical protein [Raphidiopsis brookii D9] Length = 262 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 16/244 (6%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L+RL + + Q + Q HYL VLR+++GD + +G WL+K++ Sbjct: 2 AQLQRLTIQISQLQQNQVLLTPKQKHYLLRVLRLQDGDQFISMDGMGKWWLTKLTADTAQ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 I ++ + + I + K N D +++ S E+G+ +I PV++ T + Sbjct: 62 I---LQTLTPKTELPLSITLILALPKGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSPQ 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R R AAEQ + +P I P L + + F C + S L Sbjct: 119 KLERWRRIAKEAAEQSERAFVPTILEPVAFSTALSEYSN-----FKCYICEARGSYPHLI 173 Query: 183 AIAHIP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I +IP V I IGPEGG+ E T F P+SLG RILR+ TA + A++L+ Sbjct: 174 NIINIPLKDIKEVVIAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSLI 232 Query: 238 QAIC 241 A C Sbjct: 233 AAAC 236 >gi|332535117|ref|ZP_08410927.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas haloplanktis ANT/505] gi|332035435|gb|EGI71933.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas haloplanktis ANT/505] Length = 244 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 32/234 (13%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ VLRMK G+++ +FNG+ GE+LS+I V K + + +S ++ Sbjct: 23 DAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKTVVVMPLELNPHDVESPLKIHL 82 Query: 87 SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRV-------RTYTISAA 135 + +++D+ IQKSVE+G+ I P+ ++Q + DR+ + I+AA Sbjct: 83 GQCVSRGDKMDFTIQKSVELGITEITPI---FSQRCGVKLMGDRLEKKHQQWQKIAIAAA 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHIP----N 189 EQ +P I+PP LK W A +T + +L H+I I Sbjct: 140 EQSGRNFVPIIHPPID----LKQW-------LAQQTDAIKLTLHPRAEHSIKTITVPKDG 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V L+GPEGG+ +E L FV + LGPR+LR++TAA+ ++ +Q GD Sbjct: 189 VRFLVGPEGGFTDDEMALTKQLEFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241 >gi|312795128|ref|YP_004028050.1| surface protein [Burkholderia rhizoxinica HKI 454] gi|312166903|emb|CBW73906.1| surface protein [Burkholderia rhizoxinica HKI 454] Length = 271 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 32/256 (12%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R FV PL D ++ HVLR++ GD +LFNG+ G++ +++ + K Sbjct: 28 RFFVPMPLHSGHSMPLPDDVVRHM-HVLRLQAGDKAILFNGEGGQFDAELLQLDK----- 81 Query: 69 VEYQSRSQTKQSDVQYIFSPIKT---------NRLDYMIQKSVEMGMGAIRPVIT----- 114 + Q + D + + P + +++D++++K++E+G+ ++ P++T Sbjct: 82 --RSATVQVGRFDAREVEPPYRVVLAQGIAGGDKMDWLLEKAIELGVASVIPLVTARSVV 139 Query: 115 RYT-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFA 168 R T + + +A EQC LP + PPT + L++ D+ +++ + Sbjct: 140 RLTGERAARRHAHWQALVRAACEQCGRNQLPDVAPPTDVMAWLESSVALPRDNALRLLLS 199 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +E L A V ++IGPEGG + E+ S F+ PL LGPR+LR++T Sbjct: 200 PR---AERPFAALPDTAPAAPVIVMIGPEGGLSATEEAAAISHGFM-PLGLGPRVLRTET 255 Query: 229 AAVAAMALVQAICGDW 244 A +A +A + A G W Sbjct: 256 AGIAVLAALAARWGGW 271 >gi|319789344|ref|YP_004150977.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1] gi|317113846|gb|ADU96336.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1] Length = 239 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 16/227 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV--EYQSRSQTKQSDV 82 G + + VLR+K+GD I++F+G+ E+ + I S++ K+ E + + Sbjct: 18 GQEARHALKVLRLKKGDEIIVFDGEGKEYSAVIEAASPTSVKLKIVEEINVNRDSPLNST 77 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI------TRYTQNTHYNMDRVRTYTISAAE 136 Y+ K + + +QK E+G+ I PV+ + +N M R + ++AA+ Sbjct: 78 LYMGLTNKLQKFELALQKVTELGVTRIVPVVCARSSTAQLVKNWSGKMRRWQEIVVNAAK 137 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC LP + P L + D + + V ++ S + + A +V++L+GP Sbjct: 138 QCGRSVLPELLEPVPLPEVED--DSDLKFVLWEKGGKSLKNYQDYVA----SSVSLLVGP 191 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG E E L S F P+ LG RILR++TAA+A + LVQ I GD Sbjct: 192 EGGLEKGEIELLESKGF-KPIYLGKRILRAETAAIAGVTLVQFIWGD 237 >gi|293607138|ref|ZP_06689480.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC 43553] gi|292814472|gb|EFF73611.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC 43553] Length = 243 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 10/239 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F D PL + H+ VLR+K G++++LFNG+ GE+ + + GK+ + Sbjct: 5 RFFCDIPLSAGARIALPDALAHHALRVLRLKAGESVVLFNGQGGEYPAVLDVDGKAGYAQ 64 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD 125 + ++ +R + + +++D++++K+VE+G + P+ + + Q + +D Sbjct: 65 LGDFSAREAELAGRITLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGPRLD 124 Query: 126 RVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + SAAEQC L + P +L L +++ E E+ KL Sbjct: 125 KRVAHWQRIAQSAAEQCGRNRLMAVDAPRSLADWLAEPAEGLRLLCHPEA--GEDLAGKL 182 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A + + +L+GPEGG+ +E E L V + GPR+LR++TA +A ++ V A+ Sbjct: 183 RAAPGLTALTLLVGPEGGWSDKELE-LARQAGVQAVRFGPRVLRTETAGLALVSAVSAL 240 >gi|169832194|ref|YP_001718176.1| hypothetical protein Daud_2054 [Candidatus Desulforudis audaxviator MP104C] gi|169639038|gb|ACA60544.1| protein of unknown function DUF558 [Candidatus Desulforudis audaxviator MP104C] Length = 249 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS-DV 82 +GD +L VLR+ G +LL +G + ++I V + +R + + V Sbjct: 22 TGDDARHLTRVLRLAAGSELLLLDGSGRAYAAEIREVDRDGVRAVITGPAELPADPGLRV 81 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + S K +R++ ++QK+ E+G+ AI PVI+ T + ++R R AAE Sbjct: 82 TLVPSLAKGDRMEDLVQKATEVGVAAIVPVISERTVVRLTPEKAGRRVERWRRIATEAAE 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +P ++ E LK F E + L + A + V + GP Sbjct: 142 QCRRPLVPDVHGVCRFEDALKRLPAGGAAFFLWEEERGTGLKQALRSRAPVREVFLFTGP 201 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG+ EE + V+ +SLGPR+LR+DTA V A+ALV GD Sbjct: 202 EGGFTPEEAAAATARGAVS-VSLGPRLLRTDTAGVVAVALVLYEWGD 247 >gi|163749088|ref|ZP_02156338.1| hypothetical protein KT99_19644 [Shewanella benthica KT99] gi|161331158|gb|EDQ02047.1| hypothetical protein KT99_19644 [Shewanella benthica KT99] Length = 242 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 40/259 (15%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64 + R++ D PL I + ++ VLRM G+ I LFNG D ++L++ IS K+ Sbjct: 2 RIPRIYQDSPLVIGDSLALHDEAASHIGRVLRMTPGEQISLFNGSDHDYLAEIISASKKN 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 I KV S + +S + + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 ISVKV-LSSNTNASESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERC-GVKL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + DR+ + ++A EQ +P I P +LE W CG Sbjct: 120 SGDRLEKKRQQWQKIVVAACEQSGRSRVPEIRPAMSLE----AW------------CGEP 163 Query: 176 NSLEKL-------HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 KL H I +P V +LIGPEGG E F T + LGPR+L Sbjct: 164 TDSLKLNLHPRAAHGIGGLPLEVAKVRLLIGPEGGLSDTEILQTEQDEF-TDILLGPRVL 222 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TAA+ A++ +Q GD Sbjct: 223 RTETAALTAISALQLKFGD 241 >gi|294787701|ref|ZP_06752945.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC 29453] gi|294483994|gb|EFG31677.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC 29453] Length = 239 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 27/225 (12%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQSRSQTKQSDVQYIFSP 88 HVLR++ G+ I LFNG + +++ + K + F+ + S VQ I S Sbjct: 27 HVLRLRVGEQITLFNGDGAAYSAQLLQLEKRHATCRVLFRQPENTESPLSIKLVQAISS- 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 R+D+ IQKSVE+G+ AI+PV++ + + + R + ISA EQC T Sbjct: 86 --GERMDFTIQKSVELGVVAIQPVMSERSVVRLSGERADKRVQRWQEIAISACEQCGRNT 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILIGPEGG 199 +P I P + E L+ I+ SL + ++ +P V ++IG EGG Sbjct: 144 IPDILPIVSFEQYLRQKSDELHILM---------SLRQARSLKDLPTPTRVTLMIGAEGG 194 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + E+ S + LG R+LR++TA++AA+A +Q + GD+ Sbjct: 195 WTQAEENAAFS-ANCQAVVLGKRVLRTETASLAAIAAMQTLWGDF 238 >gi|86608181|ref|YP_476943.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556723|gb|ABD01680.1| conserved hypothetical protein TIGR00046 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 289 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%) Query: 5 SHLKRLFVDFPLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 S L RL +D P G + +G Q HYL V R++ GD L+ +G W ++ G Sbjct: 22 SALPRLAID-PAQRDPSGVLRLTGPQQHYLQRVRRLRPGDLFLVLDGSGKLWAARWQAQG 80 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120 I +VE R + + +K D ++++ E+G+ I P++T T + Sbjct: 81 SQIVGEVETLPRELP--VFLHLGLAVVKGQGFDEVLRQVTELGVARITPLLTERTVLEPG 138 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--------C 172 +R + AAEQC+ L P + PPT +W Q V A T Sbjct: 139 SGRQERWQKIVREAAEQCERLRWPQVDPPTP----WTSWLAELQAVRATRTESFWWGIAV 194 Query: 173 GSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 EN+ + A+ IP +AI IGPEGG+ E+ V+ +SLGP ILR+ TAA Sbjct: 195 ARENAPLLVQALPKLQIPALAIAIGPEGGWTVAERRQAEEYGGVS-VSLGPTILRATTAA 253 Query: 231 VAAMALVQA 239 V A + + A Sbjct: 254 VVATSQIAA 262 >gi|300723910|ref|YP_003713221.1| hypothetical protein XNC1_3049 [Xenorhabdus nematophila ATCC 19061] gi|297630438|emb|CBJ91103.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 243 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 R++ PL I+T+ S D +++ VLRM G + LF+G + + ++I+ K+++ Sbjct: 5 RIYHPEPLSIETEIYLSDDAANHVGRVLRMSLGQELQLFDGSNQIFNAEITETSKKTVKI 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 ++ + +S + + + ++++ IQKSVE+G+ I P+++ + Sbjct: 65 RI-LNGKFSDHESPLNLHLGQVMSRGEKMEFTIQKSVELGVSTITPLLSERCGVKLDAER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + ISA EQC +P I P +LE K D + ++ S N+L Sbjct: 124 LEKKLQQWKKIAISACEQCGRNRIPEIRPVMSLEAWCKENDDSLKLNLHPRASQSINTL- 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + V +LIGPEGG +EE + F T + LGPR+LR++T A+ A+ +Q Sbjct: 183 ----TLPVKKVRLLIGPEGGLSAEEIDMTAKYQF-TDILLGPRVLRTETTALTAITALQV 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|294649934|ref|ZP_06727326.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824163|gb|EFF82974.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 239 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 21/242 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + + +H+ VLR KE + + FNGK GE+L ++ + K Sbjct: 1 MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 Q + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120 Query: 124 -----MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSE 175 +D R+ I+A EQC + +P I P +L +K+ + V A D+T Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 NS P++A+L+GPEGG E ET + F +G R+LR++TA V A++ Sbjct: 181 NS---------TPDIALLVGPEGGLSETEIETANQYQFKN-WCIGDRVLRTETAPVVALS 230 Query: 236 LV 237 ++ Sbjct: 231 IL 232 >gi|56708314|ref|YP_170210.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. tularensis SCHU S4] gi|110670785|ref|YP_667342.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. tularensis FSC198] gi|134301732|ref|YP_001121700.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. tularensis WY96-3418] gi|187931804|ref|YP_001891789.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. mediasiatica FSC147] gi|224457434|ref|ZP_03665907.1| 16S rRNA m3U1498 methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370797|ref|ZP_04986802.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875134|ref|ZP_05247844.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604806|emb|CAG45885.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321118|emb|CAL09268.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|134049509|gb|ABO46580.1| hypothetical protein FTW_0692 [Francisella tularensis subsp. tularensis WY96-3418] gi|151569040|gb|EDN34694.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|187712713|gb|ACD31010.1| conserved hypothetical protein [Francisella tularensis subsp. mediasiatica FSC147] gi|254841133|gb|EET19569.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159545|gb|ADA78936.1| hypothetical protein NE061598_07235 [Francisella tularensis subsp. tularensis NE061598] Length = 242 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 14/223 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IK+ + +IQK+ E+G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 PEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIIN 238 >gi|15604043|ref|NP_220558.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia prowazekii str. Madrid E] gi|6226337|sp|Q9ZDZ5|RSME_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|3860734|emb|CAA14635.1| unknown [Rickettsia prowazekii] Length = 198 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 111/198 (56%), Gaps = 16/198 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++++ L ++ + + D HY+ VLR+K D++ +FNG DGE+L++I+ +GK ++ Sbjct: 5 RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQIGKNNLSV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ Q + +S + + IK+++L I + ++G+ I P+ITR Q N++R+ Sbjct: 65 VLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQFRTVNIERL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186 I A EQ + L P I TL+ LK +N I++A+E EK+ H+I H Sbjct: 125 MKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEH-------EKVKHSILH 175 Query: 187 IP-----NVAILIGPEGG 199 I ++AI+IGPE G Sbjct: 176 ISSLLSKDIAIIIGPEEG 193 >gi|170728459|ref|YP_001762485.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella woodyi ATCC 51908] gi|169813806|gb|ACA88390.1| protein of unknown function DUF558 [Shewanella woodyi ATCC 51908] Length = 243 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 26/252 (10%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64 + R++ PL I Q + + ++ VLRM G+ I LFNG E+LS+ IS K+ Sbjct: 2 RIPRIYQASPLQIGNQVELDDEPASHIGRVLRMNAGEQISLFNGDGHEYLSEIISASKKN 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 + KV + ++++ ++ I + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 VSVKVLSSTLNESESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I A EQ +P I P T+E W A++T ++ + Sbjct: 122 ERLEKKIQQWQKIVIGACEQSGRSQVPEIRPAMTIEA----WS-------AEQTDATKLN 170 Query: 178 L--EKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L H I + P V +LIGPEGG E F T + LGPR+LR++TAA+ Sbjct: 171 LHPRAAHGIGGLSLTSPKVRLLIGPEGGLSEAEIMMTEQYQF-TDVLLGPRVLRTETAAL 229 Query: 232 AAMALVQAICGD 243 A++ +Q GD Sbjct: 230 TAISALQLRFGD 241 >gi|77361513|ref|YP_341088.1| hypothetical protein PSHAa2598 [Pseudoalteromonas haloplanktis TAC125] gi|76876424|emb|CAI87646.1| putative RNA methyltransferase with a deep trefoil knot, RrmA and YibK are structural paralogs [Pseudoalteromonas haloplanktis TAC125] Length = 244 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 20/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ VLRMK G+++ +FNG+ GE+LS+I V K + Q + +S ++ Sbjct: 23 DAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKNVVVMPQQLNTHDVESPLKIHL 82 Query: 87 SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQ 137 + +++D+ IQKSVE+G+ I P+ ++ DR+ + I+AAEQ Sbjct: 83 GQCVSRGDKMDFTIQKSVELGITEITPIFSQRC-GVKLMGDRLDKKHQQWQKIAIAAAEQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIG 195 +P ++PP L+ L ++ +E+S++ + +P V L+G Sbjct: 142 SGRNFVPVVHPPVDLKQWLAQQSAAIKLTLHPR---AEHSIKTI----TVPKDGVRFLVG 194 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ EE FV + LGPR+LR++TAA+ ++ +Q GD Sbjct: 195 PEGGFTDEEMAQTKQQNFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241 >gi|254429679|ref|ZP_05043386.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881] gi|196195848|gb|EDX90807.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881] Length = 239 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 18/212 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQYIF 86 H++ VLRM GD +++FNG+ GEWL+ I+ + K +E Q+ +T V Sbjct: 25 HHIGKVLRMAVGDELVVFNGRGGEWLASIAAISKKA-VTIEPQAFTDEDRTAPLAVTVAL 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK R+DY IQK+ E+G G + R + + + + ISA EQC + Sbjct: 84 PMIKGERMDYAIQKATELGAGELVILDTERCEVRLKGERQDKKLAHWQQVAISACEQCGM 143 Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P + +L ++L + I E S +L+ P +A+L GPEGG Sbjct: 144 NRVPAVRGVLSLRDWLASDLPALKLIAHPGEKPFSPAALQTQ------PALALLTGPEGG 197 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + +E + F TP +LG R+LR++TA V Sbjct: 198 FSDDELQRAADAGF-TPFALGNRVLRAETAPV 228 >gi|109899639|ref|YP_662894.1| hypothetical protein Patl_3334 [Pseudoalteromonas atlantica T6c] gi|109701920|gb|ABG41840.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudoalteromonas atlantica T6c] Length = 242 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 20/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ-SRSQTKQSDVQY 84 D +++A+VLR K G ++LFNG E+ + V K +R +++ + S S + Sbjct: 23 DASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRKVRVQIDAKLSMSLESPLSIHL 82 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---------QNTHYNMDRVRTYTISAA 135 + +R+D+++QKSVE+G+ I P+IT Q H ++ I+A Sbjct: 83 GQGVSRGDRMDWVLQKSVELGVTEITPLITERCGVKLDEQRWQKKHAQWQKI---IIAAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC LP ++ P + + ++ +E S H V +LIG Sbjct: 140 EQCGRNVLPVLHMPMDFQSWVNQSTQALRLALHPR---AEKSFR--HTSVGKDGVRLLIG 194 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ +E F T + LGPR+LR++TAA+ A++ +QAI GD Sbjct: 195 PEGGFSDQELYQTEQGGFQT-VQLGPRVLRTETAAITAISALQAIYGD 241 >gi|256821459|ref|YP_003145422.1| hypothetical protein Kkor_0233 [Kangiella koreensis DSM 16069] gi|256794998|gb|ACV25654.1| protein of unknown function DUF558 [Kangiella koreensis DSM 16069] Length = 242 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 16/245 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SI 65 R+F L + T+ + +++ VLRM G I LFNG + ++I + + S+ Sbjct: 5 RIFTSEALSLSTEMALDKEASTHISRVLRMNTGQQIELFNGDGFSYFAQIQAIERNQVSV 64 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 R VE + ++ + ++++ +QK VE+G+ P+IT + Sbjct: 65 RV-VEAIEVNNESPLNIHLFQGISRGDKMELTLQKGVELGVKQFTPLITERCGVKLDAKR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + SA EQC ++P +YP L+ L ++ + D S++S + Sbjct: 124 WQKKLQHWQKVIESACEQCGRNSIPSLYPAVKLQDALSQLNNTSFFMHPD----SKHSFK 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A A + + +GPEGG+ EE E + S P+ LGPRILR++TAA+AA++++ + Sbjct: 180 TIIADAQ-SELQLWVGPEGGFSDEEVEWVESHG-CKPVQLGPRILRTETAALAAVSVMNS 237 Query: 240 ICGDW 244 + GD+ Sbjct: 238 LWGDF 242 >gi|299769311|ref|YP_003731337.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp. DR1] gi|298699399|gb|ADI89964.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp. DR1] Length = 240 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ +S + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTLENFNPNNRNAPFKAVLGQVMSKGDRMDYAIQKATELGVSKIQLLTSDRCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L E+L + + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLNEWLSSSELPQSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|149911573|ref|ZP_01900186.1| hypothetical protein PE36_05278 [Moritella sp. PE36] gi|149805352|gb|EDM65364.1| hypothetical protein PE36_05278 [Moritella sp. PE36] Length = 243 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 26/249 (10%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67 R+F L + + + S D ++ VLRM GD + LFNGK G++ + I KS+ Sbjct: 5 RIFESGELIVGSSFELSPDGAGHVGRVLRMTTGDTLTLFNGKGGQYQATIEQTTKKSVTV 64 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + E+Q + + + + +++D+ IQKSVE+G+ AI P+ + + Sbjct: 65 HIDEFQDINSESPLKIHLGQAISRGDKMDFTIQKSVELGVTAITPLFSERCGVKLSGERL 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 + + + I+A EQ +P + PP LK+W A+ET + +L Sbjct: 125 EKKIQQWQKIVIAACEQSGRNFVPQVLPPKQ----LKDWA-------AEETTELKLNLHP 173 Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ++I +P V +LIGPEGG ++E F L LGPR+LR++TAA+ A+ Sbjct: 174 RAKYSINTLPEPKHGVRLLIGPEGGLSADEINMTEQFNFEETL-LGPRVLRTETAALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQCRFGD 241 >gi|125973834|ref|YP_001037744.1| hypothetical protein Cthe_1319 [Clostridium thermocellum ATCC 27405] gi|281417994|ref|ZP_06249014.1| protein of unknown function DUF558 [Clostridium thermocellum JW20] gi|125714059|gb|ABN52551.1| protein of unknown function DUF558 [Clostridium thermocellum ATCC 27405] gi|281409396|gb|EFB39654.1| protein of unknown function DUF558 [Clostridium thermocellum JW20] gi|316939970|gb|ADU74004.1| protein of unknown function DUF558 [Clostridium thermocellum DSM 1313] Length = 247 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 SG+ ++++ VLR+ +GD + + +G+ ++L +I + + I ++ ++ T+ Sbjct: 19 SGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDAVINTRIVEAMKNATEPPLKV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 +F + K++++DY+IQK+VE+G+ I PVIT T ++ +R ++ AA+ Sbjct: 79 TLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMDEKSGSKKYERWNRISMEAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC+ +P + P + + L N + + E E L + + + V++ IGP Sbjct: 139 QCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIKLKEVLSSSSSVEKVSVFIGP 198 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG+ E ET S + P++LGPRILR++TA +A ++++ GD Sbjct: 199 EGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSILMYELGD 244 >gi|110832950|ref|YP_691810.1| hypothetical protein ABO_0090 [Alcanivorax borkumensis SK2] gi|110646061|emb|CAL15537.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 240 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 16/244 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R F D + + H++ VLRM D +++FNG+ GEWL++IS + K Sbjct: 3 RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAINKKAVC 62 Query: 68 --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 + + + V IK R+DY IQK+ E+G A+ R + + Sbjct: 63 IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178 + + ISA EQC + +P ++ +L ++L + I E S +L Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHPGEKSFSAAAL 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +A+L GPEGG+ ++E + F +P +LG R+LR++TA VA +A + Sbjct: 183 QGQ------TELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALW 235 Query: 239 AICG 242 A G Sbjct: 236 AWHG 239 >gi|256004286|ref|ZP_05429268.1| protein of unknown function DUF558 [Clostridium thermocellum DSM 2360] gi|255991720|gb|EEU01820.1| protein of unknown function DUF558 [Clostridium thermocellum DSM 2360] Length = 254 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 SG+ ++++ VLR+ +GD + + +G+ ++L +I + + I ++ ++ T+ Sbjct: 26 SGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDAVINTRIVEAMKNATEPPLKV 85 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 +F + K++++DY+IQK+VE+G+ I PVIT T ++ +R ++ AA+ Sbjct: 86 TLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMDEKSGSKKYERWNRISMEAAK 145 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC+ +P + P + + L N + + E E L + + + V++ IGP Sbjct: 146 QCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIKLKEVLSSSSSVEKVSVFIGP 205 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG+ E ET S + P++LGPRILR++TA +A ++++ GD Sbjct: 206 EGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSILMYELGD 251 >gi|254281685|ref|ZP_04956653.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR51-B] gi|219677888|gb|EED34237.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR51-B] Length = 242 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R+F D PL + + ++ VLR+ G + +FNG ++ + I+ V K S+ Sbjct: 5 RIFADLPLAQGAEFTLPDNASLHIGRVLRLDSGQPLTVFNGDGEDYHATITTVTKRSVSI 64 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNM 124 +V + T +V+ + K +R D+ +QK+ E+G+ I P+++ + Sbjct: 65 EVHSVATNGTTSPLEVELGLALSKGDRFDWAVQKATELGVAHITPLVSERVEVRLNPQRE 124 Query: 125 DRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++ RT+ ISA EQC TL + PT L L+ + ++V D + EK Sbjct: 125 EKKRTHWHNIVISACEQCGRSTLAGVSSPTQLRPWLERVEAPLKLVL-DHRSATALPEEK 183 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 VA+LIGPEGG E E + F L LGPR+LR++TA V A++++ Sbjct: 184 PD------RVALLIGPEGGLTESELELAEASGFQR-LQLGPRVLRTETAPVVALSVLGNR 236 Query: 241 CGD 243 GD Sbjct: 237 WGD 239 >gi|332184390|gb|AEE26644.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf. novicida 3523] Length = 242 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 14/225 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNSDSLQYKTKIIAIDNKNITLEVIDKKHINNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IK+ + +IQK+ E+G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + ++ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DIQIPQNDLNLVLCPYTQTKQDFVQKIKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 PEGG+ E HS F T ++LG RIL+++TA + ++++ I Sbjct: 197 PEGGFSDREMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240 >gi|260767459|ref|ZP_05876396.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii CIP 102972] gi|260617571|gb|EEX42753.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii CIP 102972] gi|315181239|gb|ADT88153.1| hypothetical protein vfu_A03045 [Vibrio furnissii NCTC 11218] Length = 243 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQ 83 S D ++A VLRM+EG +L+F+G E+ + I GK + V+ R T +S + Sbjct: 21 SDDAAGHIARVLRMQEGQEVLVFDGSGAEFPAIIHEAGKK-QVVVDLAERIDTNLESPLN 79 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 + + +++++ IQKSVE+G+ I P+++ + + + + ISA Sbjct: 80 LHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLDAKRFEKKLQQWQKIAISAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P TLE ++ S N+L + + V +LIG Sbjct: 140 EQCGRNVVPDIRPIMTLEAWCAEQTDALKLNLHPRAKYSINTLPE-----PVTKVRLLIG 194 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 195 PEGGLSAEEIDMTQQYHFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|10945822|gb|AAG24651.1| unknown [Alcanivorax borkumensis] Length = 240 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 16/241 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R F D + + H++ VLRM D +++FNG+ GEWL++IS + K Sbjct: 3 RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAISKKAVC 62 Query: 68 --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 + + + V IK R+DY IQK+ E+G A+ R + + Sbjct: 63 IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178 + + ISA EQC + +P ++ +L ++L + I E S +L Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHPGEKSFSAAAL 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +A+L GPEGG+ ++E + F +P +LG R+LR++TA VA +A + Sbjct: 183 QGQ------TELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALW 235 Query: 239 A 239 A Sbjct: 236 A 236 >gi|254519874|ref|ZP_05131930.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226913623|gb|EEH98824.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 250 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 21/242 (8%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ- 76 I + K GD +L VLR+ EGD I+L N E+L+ IS + K VE + + Q Sbjct: 12 IDNEAKILGDDVKHLYKVLRLNEGDKIVLNNCDGEEFLASISTITKQ-EVIVEIEEKLQI 70 Query: 77 TKQSDVQ-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTY 130 +S V+ Y+F + K ++D ++QK E+G+ P +T + +DR+ Sbjct: 71 NNESSVKIYLFQGLPKAQKMDLIVQKGTELGITEFIPTLTDRVDIKLKGDFKKLDRLNRI 130 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV--------FADETCGSENSLEKLH 182 + AA+Q +P + P + + L ++ ++ F +T + L++ Sbjct: 131 ALEAAKQSKRSIIPNVVDPISFDEALDKMNNLDMVIVPYENAENFGIKTLFNHTDLDR-- 188 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 I V IL+GPEGG+ +E L ++LG RILR++TA A +LVQ G Sbjct: 189 --TKIKTVGILVGPEGGFEEDEINRLKE-NGAYIVTLGSRILRTETAGFVATSLVQYELG 245 Query: 243 DW 244 D Sbjct: 246 DL 247 >gi|90409107|ref|ZP_01217229.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3] gi|90309781|gb|EAS37944.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3] Length = 275 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT-KQSDVQYIFSPI--K 90 HVLR+KEG NI+LFNG G++ + + V K V+ + +QT +S + + + Sbjct: 62 HVLRLKEGLNIILFNGLGGQFTATLINVKKR-SCTVKITAFTQTDNESPLHLHLGQVISR 120 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCDILTL 143 R++++IQKSVE+G+ I P+++ N++R+ + I+A EQ + Sbjct: 121 GERMEFIIQKSVELGVNEITPLLSERC-GVKVNVERMAKKHQQWQKIAIAACEQSGRNIV 179 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P ++PP ++ Q+ S +L +I N+ +LIGPEGG Sbjct: 180 PIVHPPQQMQQWCTQSTDALQLTLHPRALLSIKTLPD-----NISNIRLLIGPEGGLSDG 234 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E +L F L LGPR+LR++TA + A++ +Q GD Sbjct: 235 EINLTKTLNFTETL-LGPRVLRTETATLTAISALQFRFGD 273 >gi|84394071|ref|ZP_00992807.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01] gi|84375313|gb|EAP92224.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01] Length = 243 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 20/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81 D ++ VLRMKEG ++LLF+G E+ + I+ V K ++ ++E S S Sbjct: 23 DAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKNVTVNVTERIERSSESPLDLHL 82 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 Q I + +++++ IQKSVE+G I P+I+ T+ + + + I+A Sbjct: 83 GQVIS---RGDKMEFTIQKSVELGANTITPLISERCGVKLDTKRFEKKLAQWQKIAIAAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ T+P I P LE ++ S N+L + + V +LIG Sbjct: 140 EQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PVSKVRLLIG 194 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 195 PEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|119470540|ref|ZP_01613243.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7] gi|119446241|gb|EAW27518.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7] Length = 244 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 24/230 (10%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ VLRMK G+++ +FNG+ GE+LS+I V K + Q +S ++ Sbjct: 23 DAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVSKKNVVVMPQQFNPHDVESPLKIHL 82 Query: 87 SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRV-------RTYTISAA 135 + +++D+ IQKSVE+G+ I P+ ++Q + DR+ + I+AA Sbjct: 83 GQCVSRGDKMDFTIQKSVELGITEITPI---FSQRCGVKLIGDRLDKKHQQWQKIAIAAA 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAIL 193 EQ +P ++PP ++ L+ + ++ +E+S++ + +P V L Sbjct: 140 EQSGRNYVPVVHPPIDIKQWLEQSTNAIKLTLHPR---AEHSIKTI----TVPEDGVRFL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +GPEGG+ EE FV + LGPR+LR++TAA+ ++ +Q GD Sbjct: 193 VGPEGGFTDEEMAQTKQQEFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241 >gi|328474086|gb|EGF44891.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus 10329] Length = 243 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 34/237 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D ++ VLRMKEG +LLF+G E+ + I V K V+ R ++ Sbjct: 21 SEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVIREVSKK-NVLVDVTERVESN------ 73 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128 I SP+ + +++++ IQKSVE+G+ I P+I ++ +D+ R Sbjct: 74 IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130 Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ISA EQC +P I P +LE + ++ S N+L Sbjct: 131 WQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG SEE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 186 VEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|239995591|ref|ZP_04716115.1| hypothetical protein AmacA2_14079 [Alteromonas macleodii ATCC 27126] Length = 242 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 22/251 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ ++ + + + H++A VLR+K I+LFNG E+ ++I V + Sbjct: 2 RIPRVYYPNPIPLEQEFELTEGAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRK- 60 Query: 66 RFKVEYQS-RSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + VE + S K+S + K +R+D ++QKSVE+G+ I PVIT + Sbjct: 61 KVTVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVIT---ERCTV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I A EQ +P + P +L L + + ++V A G Sbjct: 118 KLDESRWEKKIQQWQKIIIGACEQSGRNIIPALNAPVSLNQWLSSSTNTTRLVLAP---G 174 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E SL + A +LIGPEGG E + + + +SLGPRILR++TAA+ + Sbjct: 175 AEQSLARQPYNAQ--GFRLLIGPEGGLSETEVHQANENGYQS-VSLGPRILRTETAAITS 231 Query: 234 MALVQAICGDW 244 ++++QA GD+ Sbjct: 232 LSILQAQHGDF 242 >gi|313897356|ref|ZP_07830899.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2] gi|312957726|gb|EFR39351.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2] Length = 252 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 12/217 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +Q H++ V+RM++GD I + + L+++ Y + +V + R Q+ V+ I Sbjct: 21 EQTHHIRRVMRMQQGDVIRVADNSGRVLLAEVEYHQEEAAARVVREVRD-CSQTSVELIL 79 Query: 87 SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 + IK + DY++QKS E+G+ I P V+ + + + R A EQC Sbjct: 80 AQGMIKGEKWDYLLQKSAELGVAEIIPFVSSRCVVKIKDEKSEKKIVRWNKILCEACEQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPE 197 TL + PP T L D + +++ + D C SE E L A V +++G E Sbjct: 140 KRSTLVRLQPPCTFS-QLSQIDADLRLIAYEDADCKSERLCEVLRAHPSPKRVLMVVGSE 198 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 GG+ ++E E L + F +SLG RILR++TAA++ + Sbjct: 199 GGFSADEVEALTATGF-HRVSLGGRILRAETAAISLL 234 >gi|310818984|ref|YP_003951342.1| hypothetical protein STAUR_1711 [Stigmatella aurantiaca DW4/3-1] gi|309392056|gb|ADO69515.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 RLFV P T+ SGD++HYL HVLR+ EG ++ +F+G + ++++ V + R Sbjct: 3 RLFVPLPEHPPTEVLLSGDRHHYLLHVLRLSEGASLEVFDGTGRAFEARVAAVDAREARL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + +RS + + + K ++L++++QK E+G A PV T + + Sbjct: 63 TL-GAARSTPPRRALSVLQGLPKGDKLEWVLQKGTELGAAAFYPVDTARSVVKLEPKRAG 121 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 R AA QC +P ++PP L + Q++ DE + E Sbjct: 122 ERTLRWEKIVEEAARQCRRNDVPQVHPPAALLDRARALPPGTQLLVLDEEETAVPLGEAF 181 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A A VA+++GPEGG EE L +L ++LG ILR++T Sbjct: 182 RACAPGAPVALVVGPEGGLTREEVAALRAL-GARGVTLGALILRTET 227 >gi|320106034|ref|YP_004181624.1| hypothetical protein AciPR4_0797 [Terriglobus saanensis SP1PR4] gi|319924555|gb|ADV81630.1| protein of unknown function DUF558 [Terriglobus saanensis SP1PR4] Length = 237 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 14/229 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL--SKISYVGKSIRFKVEYQSRSQ 76 +T +GDQ +LA VLR + G +F+ G +L +++ VG+ ++ Sbjct: 15 RTSASLTGDQASHLARVLRAEPGQ---IFDVVAGGFLHRAEVVNVGEDAVIFTLHEEMES 71 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYT 131 V + K + L++ I+K+ E+G+ I PV+ R T Q + ++R R Sbjct: 72 DAALPVHLYLAVYKFDHLEWAIEKATELGVARITPVLARRTEKHLAQASTKRVERWRRIV 131 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 + +++Q +P + P TL LK +I+ A+ EN+L H ++A Sbjct: 132 LESSKQSRRTEIPVVDDPATLASTLKTCTAGTRILLAE--TEQENTLAAALK-GHAGDIA 188 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +GPEGG+ EE L S T +LGPRILR++TA +AA+A+ +I Sbjct: 189 LAVGPEGGWTPEEM-ALFSTQQWTHATLGPRILRAETACIAALAITSSI 236 >gi|218710623|ref|YP_002418244.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio splendidus LGP32] gi|218323642|emb|CAV19930.1| Hypothetical protein VS_2677 [Vibrio splendidus LGP32] Length = 243 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRMKEG ++LLF+G E+ + I+ V K ++ ++E S S Sbjct: 21 SEDAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKNVTVNVTERIERSSESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+I+ + + + + I+ Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVNTITPLISERCGVKLDAKRFEKKLAQWQKIAIA 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQ T+P I P LE ++ S N+L + I V +L Sbjct: 138 ACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PISKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|319765029|ref|YP_004128966.1| hypothetical protein Alide_4381 [Alicycliphilus denitrificans BC] gi|330827224|ref|YP_004390527.1| ribosomal RNA small subunit methyltransferase E [Alicycliphilus denitrificans K601] gi|317119590|gb|ADV02079.1| protein of unknown function DUF558 [Alicycliphilus denitrificans BC] gi|329312596|gb|AEB87011.1| Ribosomal RNA small subunit methyltransferase E [Alicycliphilus denitrificans K601] Length = 237 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 VLR++ GD + LFNG+ GEW + ++ +G+S + +V + + + + ++ + N Sbjct: 27 QVLRLQPGDALTLFNGEGGEWTATVARMGRSDVEVEVGAHAPVEREAARAVHLVVGMPAN 86 Query: 93 -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 R+D++++K+ E+G +I+P+ + + + ++A EQC +P Sbjct: 87 ERMDWLVEKATELGAASIQPIAAARSVLKLAGERAAKRQQHWQAIAVAACEQCGRNRVPP 146 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHIPNVAILIGPEGGYHSEE 204 + P LL +W A + L A V +L GPEGG ++E Sbjct: 147 VAAP----LLLSDWLRQSAPEGARLVLSLRDGARALREAAGGAGAVWVLHGPEGGLTAQE 202 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ + F P SLG R+LR++TA+VAA+A++ Sbjct: 203 EDAALAQGF-EPASLGARVLRAETASVAALAVL 234 >gi|325122892|gb|ADY82415.1| hypothetical protein BDGL_001829 [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ +S + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L E+L + + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|332142455|ref|YP_004428193.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep ecotype'] gi|327552477|gb|AEA99195.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep ecotype'] Length = 242 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 20/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ ++ + + + D H++A VLR+K I+LFNG E+ +++ V + Sbjct: 2 RIPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQVISVQRKK 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 S K+S + K +R+D ++QKSVE+G+ I PVIT + Sbjct: 62 VIVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVIT---ERCTVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I A EQ +P + P +L L + + ++V A G+ Sbjct: 119 LDESRWEKKIQQWQKIVIGACEQSGRNIIPKLNAPVSLNTWLSSSTNTTRLVLAP---GA 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L + A +LIGPEGG E + + + +SLGPRILR++TAA+ ++ Sbjct: 176 EQPLARQPYNAQ--GFRLLIGPEGGLSDTEIHQANENGYQS-VSLGPRILRTETAAITSL 232 Query: 235 ALVQAICGDW 244 +++QA GD+ Sbjct: 233 SILQAQHGDF 242 >gi|282898816|ref|ZP_06306803.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] gi|281196343|gb|EFA71253.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] Length = 250 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 18/245 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L+RL + + Q + Q HYL VLR+++GD + +G WL++++ + Sbjct: 2 AQLQRLTIQASQLQQNQVLLTPQQKHYLLRVLRLQDGDEFISMDGMGKWWLTRLT--ADT 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + +++ S + P K N D +++ S E+G+ +I PV++ T + Sbjct: 60 AQILQPLTPKTELPLSITLMLALP-KGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSPQ 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL 181 ++R R AAEQ + +P I P L + + C I C + S L Sbjct: 119 RLERWRRIAAEAAEQSERAFVPTILEPVVFNAALSEYINSQCYI------CEARGSYPHL 172 Query: 182 HAIAHIP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 I +IP V + IGPEGG+ E T F P+SLG RILR+ TA + A++L Sbjct: 173 INIINIPLKNIKEVVVAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSL 231 Query: 237 VQAIC 241 + A C Sbjct: 232 IAAAC 236 >gi|254369089|ref|ZP_04985101.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122039|gb|EDO66179.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 242 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 14/223 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IK+ + +IQK+ ++G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 PEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIIN 238 >gi|88798495|ref|ZP_01114079.1| hypothetical protein MED297_05539 [Reinekea sp. MED297] gi|88778595|gb|EAR09786.1| hypothetical protein MED297_05539 [Reinekea sp. MED297] Length = 245 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 35/233 (15%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTK-QSDVQY 84 + +L VLR+K+G +I +FNG+ + ++++ VGK S R + + + + + + Sbjct: 27 FQHLIKVLRLKDGADIQVFNGRGDRFRAELTEVGKKQASARLLEQLDATPEPQLHTHLGL 86 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQC 138 + S K +R DY +QK+ E+G+ +I P+ + + + M + SA EQC Sbjct: 87 VMS--KGDRFDYALQKATELGVTSITPLTSEHCDLRLNAERQTKKMAHWQGVIESACEQC 144 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--------V 190 T+P +YP L ++ D + Q++ LH A P+ V Sbjct: 145 YRDTVPILYPVRALRDWVEIQDSDVQLI--------------LHTAAQAPDWPEESPQSV 190 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + LIGPEGG +E + F++ LGPRILR++TA V ++L+Q GD Sbjct: 191 SFLIGPEGGLSDDEVQWSLKNDFMS-WQLGPRILRTETAPVVMLSLLQNKWGD 242 >gi|331015976|gb|EGH96032.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 275 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 19/230 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +V+ R Q + ++ + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 E L + A ++A LIGPEGG + E + + F LGPR+LR++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGFHA-ARLGPRVLRTE 222 >gi|77163661|ref|YP_342186.1| hypothetical protein Noc_0123 [Nitrosococcus oceani ATCC 19707] gi|254435009|ref|ZP_05048516.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani AFC27] gi|76881975|gb|ABA56656.1| 16S rRNA m(3)U-1498 methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088120|gb|EDZ65392.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani AFC27] Length = 243 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 29/249 (11%) Query: 12 VDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 V FPL + S D+ Y+ VLR++ G + LF+G+ E+ + + + K KV Sbjct: 6 VYFPLSLSIGSSVSLDERALQYVIRVLRLRLGAQLRLFDGRGAEYQAVLETIEKRA-VKV 64 Query: 70 EYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-- 118 R + ++ SP+ + R+DY +QK+VE+G+ I P++T + Sbjct: 65 RILERIE------HHVESPLHIILGQGISRGERMDYALQKAVELGVSRIIPLLTERSAVN 118 Query: 119 -NTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + R+R + ISA EQC +P + P L L++ DH V D S Sbjct: 119 LSAERAEKRLRHWQGVIISACEQCGRNYIPPVDTPRPLADFLRD-DHRGLAVLLDPR--S 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L+ L + + +LIGPEGG + E + F+ + LGPRILR++TA VAA+ Sbjct: 176 RRPLKAL-PLPLDNRLIVLIGPEGGLNKGEAKQAQQADFIG-VCLGPRILRTETATVAAL 233 Query: 235 ALVQAICGD 243 +Q + GD Sbjct: 234 TALQLLWGD 242 >gi|291615399|ref|YP_003525556.1| hypothetical protein Slit_2944 [Sideroxydans lithotrophicus ES-1] gi|291585511|gb|ADE13169.1| protein of unknown function DUF558 [Sideroxydans lithotrophicus ES-1] Length = 245 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 12/244 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R + PL + T + + H+ + VLR++ GD + +F+G + I+ + Sbjct: 5 RFYCPPPLPLATNFELPPEAAHHASRVLRLRVGDAVQIFDGLGNALDATINAINGKHVLL 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQ-NT 120 Q+ ++S + + + ++D+++QK+ E+G I PV + R + Sbjct: 65 GNLQTFMGQQESGLHIALAQAMCTSEKMDWVVQKATELGAAEIIPVQTLRSVARLSSPRA 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R +SA EQC TLP + P L L++ H F G+ N + Sbjct: 125 EKRAEHWRNVAVSACEQCGRNTLPQLQTPQELGTWLEDVRHTAGGKFILLPGGAINLQSQ 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +LIGPEGG+ ++E F+ P+ LGPR+LR++TAA+A +A +Q + Sbjct: 185 PRPQGR---ATLLIGPEGGFTADEANIAQQAGFI-PILLGPRVLRTETAALAGIAALQTL 240 Query: 241 CGDW 244 GD+ Sbjct: 241 WGDF 244 >gi|182626905|ref|ZP_02954639.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str. JGS1721] gi|177907755|gb|EDT70367.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str. JGS1721] Length = 250 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76 T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K SI+ + ++ Sbjct: 14 THAKITGEDVKHIYKVLRVKAGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 + + + P K ++D ++QK VE+G+ I P IT + +DR+ + Sbjct: 74 SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189 A +Q +P + P + +L+ D +V E G + + I N Sbjct: 133 EACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSIKN 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I++GPEGG+ E E L ++LGPRILR++TA ++L+Q GD Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIITLGPRILRTETAGFTCISLIQYELGDL 246 >gi|260773596|ref|ZP_05882512.1| ribosomal RNA small subunit methyltransferase E [Vibrio metschnikovii CIP 69.14] gi|260612735|gb|EEX37938.1| ribosomal RNA small subunit methyltransferase E [Vibrio metschnikovii CIP 69.14] Length = 243 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 28/234 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM+ G ++ LF+G D E+ + IS + K + V+ Q R + + Sbjct: 21 SDDAANHIGKVLRMQPGQSVTLFDGSDAEFPAVISEISKK-QLTVDIQQRIE------KS 73 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129 I SP+ + +++++ IQKSVE+G+ I P+++ + + + + Sbjct: 74 IESPLNLHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLDPKRFEKKLQQWQK 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I P LE ++ S N+L + + Sbjct: 134 IAIAACEQCGRNIVPVIRPVMELEAWCAEPSQALKLNLHPRASYSINTLPE-----PVNK 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG +E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 189 VRLLIGPEGGLSEQEIAMTEQYHFAETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|182418451|ref|ZP_02949745.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237666873|ref|ZP_04526858.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377833|gb|EDT75377.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237658072|gb|EEP55627.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 253 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 18/238 (7%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 G G+ ++ VLR+ EG+ I+L N + E+L KI+ + KS Q +SD Sbjct: 16 GIIVGEDVKHIYKVLRLSEGEEIILNNCEGIEYLGKINSINKSEVIVDIIQKLDTNNESD 75 Query: 82 VQ-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAA 135 ++ Y+F + K ++D ++QK E+G+ P IT + +DR+ + A+ Sbjct: 76 IKIYLFQGLPKGQKMDLIVQKGTELGINEFIPTITDRVDVKLKGEFKKLDRLNRIALEAS 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGSENSLEKLHA----IAHI 187 +Q +P + E + N + N +V E G + ++KL +++I Sbjct: 136 KQSKRSIIPKVKEVINFEEAMLNLE-NMDLVIVPYENAENFGVKTLMKKLREEKEDLSYI 194 Query: 188 PNVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 NV I+IGPEGG+ +E KE + ++ ++LG RILR++TA A AL+Q D Sbjct: 195 HNVGIVIGPEGGFEEDEIKELSNRGAYI--VTLGRRILRTETAGFTATALIQYELSDL 250 >gi|56476009|ref|YP_157598.1| 16S ribosomal RNA methyltransferase RsmE [Aromatoleum aromaticum EbN1] gi|56312052|emb|CAI06697.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 241 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R F PL + + H+ VLR+++GD ++LF+G+ GE +++ G+ ++ Sbjct: 3 ISRFFFPCPLPDSGEIELPDALAHHALRVLRLRDGDPLVLFDGRGGELAARLQVRGRDAL 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119 + EY + + + + + ++D+++QK+VE+G A+ P V+ + Sbjct: 63 AVRDEYHALERESPLSLVLVQALASGEKMDWIVQKAVELGTSALVPLQAERCVLKLSGER 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 H + R ISA EQ +P I P T L L + ++V SL Sbjct: 123 AHKRVAHWRQVAISACEQSGRNRVPEIEPITGLREYLASAAVGSRLVLTPVEGRRLASLA 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A H+ L+GPEGG+ EE + V P+ LGPR+LR++TA +AA+A +QA Sbjct: 183 RPDAALHL-----LVGPEGGWSDEELAMCRAAGCV-PVGLGPRVLRTETAGLAAVAALQA 236 Query: 240 ICGDW 244 + GD+ Sbjct: 237 LWGDF 241 >gi|161936292|ref|YP_131254.2| 16S ribosomal RNA methyltransferase RsmE [Photobacterium profundum SS9] Length = 243 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 44/253 (17%) Query: 15 PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 P + +QGK S D +++ V+RM+ G +LLF+G D E+ + IS K +V+ Q Sbjct: 9 PELLPSQGKVMLSDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK-NVEVDIQ 67 Query: 73 SRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 R++ I SP+ + ++++ IQKSVE+G+ I P+I+ N Sbjct: 68 CRNENS------IESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERC-GVKLN 120 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R + ++A EQC +P I P LE +W C A+E G + Sbjct: 121 AERFEKKLSQWQKIVVAACEQCGRNVIPEIRPVMKLE----DW---C----AEEYDGLKL 169 Query: 177 SLEKL--HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +L ++I +P V +LIGPEGG +EE F L LGPR+LR++T A Sbjct: 170 NLHPRANYSINTLPEPVTKVRLLIGPEGGLSAEEISMTEQYKFDEIL-LGPRVLRTETTA 228 Query: 231 VAAMALVQAICGD 243 + A+ +Q GD Sbjct: 229 MTAITALQVRFGD 241 >gi|121590723|ref|ZP_01678055.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153819149|ref|ZP_01971816.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|227080679|ref|YP_002809230.1| hypothetical protein VCM66_0454 [Vibrio cholerae M66-2] gi|229507107|ref|ZP_04396613.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX 330286] gi|298501000|ref|ZP_07010801.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|121547454|gb|EAX57563.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126510294|gb|EAZ72888.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|227008567|gb|ACP04779.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229355852|gb|EEO20772.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX 330286] gi|297540248|gb|EFH76308.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 243 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|153826558|ref|ZP_01979225.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149739650|gb|EDM53864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 243 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLANITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|168204735|ref|ZP_02630740.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str. JGS1987] gi|169343763|ref|ZP_02864762.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169298323|gb|EDS80413.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|170663617|gb|EDT16300.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str. JGS1987] Length = 250 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76 T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K SI+ + ++ Sbjct: 14 THAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 + + + P K ++D ++QK VE+G+ I P IT + +DR+ + Sbjct: 74 SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189 A +Q +P + P + +L+ D +V E G + + I N Sbjct: 133 EACKQSKRTVIPQVLEPMDFKGVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSIKN 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I++GPEGG+ E E L ++LGPRILR++TA ++L+Q GD Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246 >gi|18311008|ref|NP_562942.1| hypothetical protein CPE2026 [Clostridium perfringens str. 13] gi|168208728|ref|ZP_02634353.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str. ATCC 3626] gi|168212937|ref|ZP_02638562.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE str. F4969] gi|18145690|dbj|BAB81732.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|170712974|gb|EDT25156.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str. ATCC 3626] gi|170715557|gb|EDT27739.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE str. F4969] Length = 250 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76 T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K SI+ + ++ Sbjct: 14 THAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 + + + P K ++D ++QK VE+G+ I P IT + +DR+ + Sbjct: 74 SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189 A +Q +P + P + +L+ D +V E G + + I N Sbjct: 133 EACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKN 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I++GPEGG+ E E L ++LGPRILR++TA ++L+Q GD Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246 >gi|153802600|ref|ZP_01957186.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124121863|gb|EAY40606.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 243 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKKVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|293609672|ref|ZP_06691974.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828124|gb|EFF86487.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 240 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L E+L + + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|169632941|ref|YP_001706677.1| hypothetical protein ABSDF1185 [Acinetobacter baumannii SDF] gi|169151733|emb|CAP00535.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 240 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + +LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQAILFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + I + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPVDRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L L + D + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|262403905|ref|ZP_06080462.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586] gi|262349867|gb|EEY99003.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586] Length = 243 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITARVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|270158328|ref|ZP_06186985.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289163426|ref|YP_003453564.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) [Legionella longbeachae NSW150] gi|269990353|gb|EEZ96607.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288856599|emb|CBJ10406.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) [Legionella longbeachae NSW150] Length = 242 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 22/231 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S + ++ VLRM+EG+++ LF G + E+ + I V K V + +++S + Sbjct: 21 SPEASQHVGVVLRMQEGEHLTLFCGDNREFDAIIETVKKKQVIVVVGSIKKVSRESPLTI 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT----------RYTQNTHYNMDRVRTYTI 132 + K R+++++QK+VE+G+ +I P++T R T+ H + + I Sbjct: 81 HLAQAISKGERMEWVMQKAVELGVASITPILTERCVVKLDQERMTKKLH----QWQAIVI 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 +A EQ ++P ++ P TL L+ + + +N + + + ++ + Sbjct: 137 AACEQSGRNSVPQVHAPVTLSRYLEEIQAELKFILHP----GQNKTWRDYTF-KVADIVL 191 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 LIGPEGG +E + F PLSLGPRILR++TAA+ A++++QA+ GD Sbjct: 192 LIGPEGGLSEQEVQYTSKHGF-QPLSLGPRILRTETAAITALSVLQAVGGD 241 >gi|114048821|ref|YP_739371.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-7] gi|113890263|gb|ABI44314.1| protein of unknown function DUF558 [Shewanella sp. MR-7] Length = 243 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 R++ PL + Q D ++ VLRM G++I LFNG ++L++I G KS+ Sbjct: 5 RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGNGNDYLAEIVDAGKKSVTV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119 KV + +S + + + +R+++ IQKSVE+G+ I P+ + + Sbjct: 65 KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + ISA EQ +P + P L+ ++ N L+ Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|260556741|ref|ZP_05828959.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260410000|gb|EEX03300.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 240 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + I + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L L + D + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPASKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|90580291|ref|ZP_01236098.1| hypothetical protein VAS14_20206 [Vibrio angustum S14] gi|90438593|gb|EAS63777.1| hypothetical protein VAS14_20206 [Vibrio angustum S14] Length = 225 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 40/240 (16%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ V+RM+ G +L+F+G + E+ + I+ K +VE QSR + Sbjct: 3 SDDAANHVGRVMRMQVGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVE------HS 55 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129 I SP+ + +++++ IQKSVE+G+ I P+I+ + +D+ + Sbjct: 56 IESPLDIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLDQWQK 115 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHI 187 I+A EQC +P I P LE W C A+E G + +L ++I + Sbjct: 116 IAIAACEQCGRNVVPTIRPVMKLE----QW---C----AEEYDGLKLNLHPRANYSINTL 164 Query: 188 P----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P NV +LIGPEGG ++E F L LGPR+LR++T A+ A+ +Q GD Sbjct: 165 PTPVTNVRLLIGPEGGLSADEISMTEQYKFDEIL-LGPRVLRTETTAMTAITALQVRFGD 223 >gi|153216268|ref|ZP_01950361.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124114357|gb|EAY33177.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 243 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQTGQEVLLFDGLGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|330830726|ref|YP_004393678.1| hypothetical protein B565_3026 [Aeromonas veronii B565] gi|328805862|gb|AEB51061.1| hypothetical protein B565_3026 [Aeromonas veronii B565] Length = 243 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 32/236 (13%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 S D +++ VLRM+ G + LFNG ++ + I+ VG KS+ ++ DVQ Sbjct: 21 SEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKSVEVTID--------SCDVQ 72 Query: 84 YIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV------- 127 + SP+ + +++D+ IQKSVE+G+ I P+ + DR+ Sbjct: 73 SVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERC-GVKLPADRLEKKREQW 131 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + ISA EQC +P + P L+ L ++ +E S+ L H Sbjct: 132 QKVVISACEQCGRNVVPEVRMPIELDAWLAEETKELKLNLHPR---AEYSINTLPVPEH- 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG S+E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 188 -GVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITALQCRFGD 241 >gi|258620733|ref|ZP_05715768.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258586931|gb|EEW11645.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 243 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPSEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|229828427|ref|ZP_04454496.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM 14600] gi|229793021|gb|EEP29135.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM 14600] Length = 246 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 8/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++++FVD G+ +L V+R++ G+ + + ++ + V + Sbjct: 1 MQQVFVDARQVNDEIVTIQGEDARHLGRVVRIRPGEEVRVSVRGGRDYYGHVLMVDREEM 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 + + T+ + +F I K +R++ +I+K+VE+G+ I PV TRY + Sbjct: 61 TVKLVEEAASTELAQKICLFQAIPKGDRMETVIEKAVELGVYEIVPVETRYCVVRLDEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSL 178 +R + +AA Q +P I P T + L + D + ++ + G + + Sbjct: 121 KARKRERWQAIAANAARQSKRSIIPRIAPVTPYQKALDDAGDADLVLLPYENARGMQATG 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L A+AH + I IGPEGG+ ++E + + +SLG RILR+DTAA+AAM +V Sbjct: 181 EALTAVAHAGGIGIFIGPEGGFAADEIKAAQGKDNIRVISLGRRILRTDTAAIAAMTMVM 240 Query: 239 AIC 241 C Sbjct: 241 MAC 243 >gi|121635582|ref|YP_975827.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18] gi|120867288|emb|CAM11059.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18] Length = 241 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK +++S++ K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAARLSFLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|262376600|ref|ZP_06069828.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308310|gb|EEY89445.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 236 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 25/244 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + R ++D L I + + +H+ VLR + G++ LFNG+ GE+ ++ V KS Sbjct: 1 MPRFYIDADLTIDVSLELTETVFHHWVKVLRAQVGESATLFNGQGGEYDVTLTEVAKKSA 60 Query: 66 RFKVEY---QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 V +R+ Q+ + + S K +R+DY IQK+VE+G+ I+ + + + + Sbjct: 61 TVSVNAFNPANRTPKFQALLGQVMS--KGDRMDYAIQKAVELGVSEIQLLTSDHCEMRLK 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCG 173 +D + I+A EQC + +P I P +LE L N ++V A DET Sbjct: 119 YDRDQKKLDHWQGIAIAACEQCGLNIVPEILAPMSLEKWLNTELPNTKLVLAPNKDET-- 176 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + A A + ++A+LIGPEGG E + F+ +G R+LR++TA V A Sbjct: 177 ------DVLADATL-DLALLIGPEGGLSEAEISAANQKGFLN-WCIGERVLRTETAPVVA 228 Query: 234 MALV 237 ++++ Sbjct: 229 LSIL 232 >gi|254226308|ref|ZP_04919899.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621170|gb|EAZ49513.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 243 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGITTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|113969034|ref|YP_732827.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-4] gi|113883718|gb|ABI37770.1| protein of unknown function DUF558 [Shewanella sp. MR-4] Length = 243 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 R++ PL + Q D ++ VLRM G++I LFNG ++L++I G KS+ Sbjct: 5 RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKSVTV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119 KV + +S + + + +R+++ IQKSVE+G+ I P+ + + Sbjct: 65 KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + ISA EQ +P + P L+ ++ N L+ Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|117921881|ref|YP_871073.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. ANA-3] gi|117614213|gb|ABK49667.1| protein of unknown function DUF558 [Shewanella sp. ANA-3] Length = 243 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 R++ PL + Q D ++ VLRM G++I LFNG ++L++I G KS+ Sbjct: 5 RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKSVTV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119 KV + +S + + + +R+++ IQKSVE+G+ I P+ + + Sbjct: 65 KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + ISA EQ +P + P L+ ++ N L+ Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQQWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|332305394|ref|YP_004433245.1| hypothetical protein Glaag_1016 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172723|gb|AEE21977.1| protein of unknown function DUF558 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 242 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ-SRSQTKQSDV 82 + D +++A+VLR K G ++LFNG E+ + V K +R +++ + S S + Sbjct: 21 TSDASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRKVRVQIDAKLSISLESPLSI 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---------QNTHYNMDRVRTYTIS 133 + +R+D ++QKSVE+G+ I P+IT Q H ++ I+ Sbjct: 81 HLGQGISRGDRMDLVLQKSVELGVTEITPLITERCGVKLDAQRWQKKHAQWQKI---IIA 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P ++ PT + + ++ +E S H V +L Sbjct: 138 ACEQCGRNVIPTLHMPTEFQAWVNQSTPALRLTLHPR---AEKSFR--HTAVGSDGVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ +E F T + LGPR+LR++TAA+ A++ +QAI GD Sbjct: 193 IGPEGGFSDQELYQTEQGGFHT-VQLGPRVLRTETAAITAISALQAIYGD 241 >gi|121728575|ref|ZP_01681596.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674458|ref|YP_001215995.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O395] gi|229519855|ref|ZP_04409289.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM 11079-80] gi|229530311|ref|ZP_04419699.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae 12129(1)] gi|254291180|ref|ZP_04961976.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|261210046|ref|ZP_05924344.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341] gi|262167137|ref|ZP_06034851.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC27] gi|121629131|gb|EAX61574.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316341|gb|ABQ20880.1| conserved hypothetical protein [Vibrio cholerae O395] gi|150422874|gb|EDN14825.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227012322|gb|ACP08532.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229332084|gb|EEN97572.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae 12129(1)] gi|229343143|gb|EEO08127.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM 11079-80] gi|260840811|gb|EEX67353.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341] gi|262024437|gb|EEY43124.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC27] gi|327483322|gb|AEA77729.1| Ribosomal RNA small subunit methyltransferase E [Vibrio cholerae LMA3894-4] Length = 243 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|229512531|ref|ZP_04402002.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae TMA 21] gi|229350424|gb|EEO15373.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae TMA 21] Length = 243 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITDRVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCSEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|312883853|ref|ZP_07743570.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus ATCC BAA-2122] gi|309368311|gb|EFP95846.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus ATCC BAA-2122] Length = 243 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 44/242 (18%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQ 83 S + ++ VLRMK G + LF+G E+++ IS K +VE QS ++ +S+++ Sbjct: 21 SEEAAGHVGRVLRMKIGQELRLFDGSGSEFIATISSQSKK-NVEVEVKQSIERSAESNLK 79 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132 + + +++++ IQKSVE+G+ I P+I+ + +D+ R I Sbjct: 80 LHLGQVISRGDKMEFTIQKSVELGVEVITPLIS---ERCGVKLDQKRFEKKLAQWQKIAI 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIA 185 SA EQC +P I P +LE NW CG E KL ++I Sbjct: 137 SACEQCGRNRIPSIRPIMSLE----NW------------CGEEYDGLKLNLHPRADYSIN 180 Query: 186 HIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +P V +LIGPEGG E + F + + LGPR+LR++TAA+ A+ +Q Sbjct: 181 TLPTPVEQVKLLIGPEGGLSEAEIDMTQKYAF-SDILLGPRVLRTETAALTAITALQVRF 239 Query: 242 GD 243 GD Sbjct: 240 GD 241 >gi|89256081|ref|YP_513443.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica LVS] gi|115314557|ref|YP_763280.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica OSU18] gi|169656563|ref|YP_001428163.2| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954533|ref|ZP_06559154.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica URFT1] gi|295312049|ref|ZP_06802864.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica URFT1] gi|89143912|emb|CAJ79131.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129456|gb|ABI82643.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|164551631|gb|ABU61207.2| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 242 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 119/223 (53%), Gaps = 14/223 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 SG+ Y+Y ++LR+K+ D I LFN D ++ +KI + K+I +V + + + + Sbjct: 21 SGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI 80 Query: 83 QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135 ++ IK+ + +IQK+ ++G+ I P+IT +T + ++R I+ + Sbjct: 81 TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC + +P I+ P + L+ ++ +V T ++ ++K+ + N I IG Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 PEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIIN 238 >gi|119475424|ref|ZP_01615777.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium HTCC2143] gi|119451627|gb|EAW32860.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium HTCC2143] Length = 241 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 15/222 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DVQYIFS 87 H+L+ VLR+K G +++LFNG ++ I+ +G KS+ ++ + ++ S + + Sbjct: 26 HHLSKVLRLKVGSDVILFNGDGYDYSGHINAIGKKSVGIYIDSREIKHSESSLKIHLGVA 85 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDIL 141 K +R+D++IQKS E+G+ I P++T T+ + ISA EQ Sbjct: 86 VSKGDRMDWIIQKSTELGVDEITPLLTERTELKLKGDRKEKKQHHWQQIAISACEQSGRA 145 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 LP I L ++ + + V + NS + + + +LIGPEGG Sbjct: 146 QLPSINRIQHLSEWIQTIEATRKFVLHHRSTALLNSNDD------VSSACLLIGPEGGL- 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 SE++ L L LGPRILR++TA +AA++++Q GD Sbjct: 199 SEDEIALAEHYHFDALQLGPRILRTETAPLAAISILQHHWGD 240 >gi|262164080|ref|ZP_06031819.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus VM223] gi|262027608|gb|EEY46274.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus VM223] Length = 243 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVRLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|258625617|ref|ZP_05720499.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|262172417|ref|ZP_06040095.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus MB-451] gi|258582119|gb|EEW06986.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|261893493|gb|EEY39479.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus MB-451] Length = 243 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|218778356|ref|YP_002429674.1| hypothetical protein Dalk_0499 [Desulfatibacillum alkenivorans AK-01] gi|218759740|gb|ACL02206.1| protein of unknown function DUF558 [Desulfatibacillum alkenivorans AK-01] Length = 257 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 10/247 (4%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + +R +++ + +G + VLR+ +GD ++L + E++ I G + Sbjct: 2 AETRRFYIEPEQITGDRAFITGQDAKHAKKVLRLAKGDPVILLDNSGLEYMGVILSAG-A 60 Query: 65 IRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 +VE Q R + + + IKT+++D +++ E+GM RP + Sbjct: 61 RDMEVEIQDRRLGATESPLKIDLAMAMIKTSKMDKLLKGVTELGMHGWRPFYASRSVPKV 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176 ++ DR + A +QC+ + LP ++ P + E L + +++ +VF +++ Sbjct: 121 KDPEDRRDRWKKIAAEAVKQCERVRLPDVHAPVSFEELCAISAEYDLGVVFWEKSRTPFQ 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + + +V ++IGPEGG+ E L V LGPRILR++TAA+A+ AL Sbjct: 181 QVLQSRLDSPPKSVLVVIGPEGGFEDHETARLEESGMVH-AGLGPRILRAETAALASCAL 239 Query: 237 VQAICGD 243 +QA GD Sbjct: 240 IQAGFGD 246 >gi|332875286|ref|ZP_08443118.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6014059] gi|323518770|gb|ADX93151.1| hypothetical protein ABTW07_2727 [Acinetobacter baumannii TCDC-AB0715] gi|332736543|gb|EGJ67538.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6014059] Length = 240 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLVTLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + I + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L L + D + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPTSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|262191080|ref|ZP_06049287.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT 5369-93] gi|297580608|ref|ZP_06942534.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|262033056|gb|EEY51587.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT 5369-93] gi|297535024|gb|EFH73859.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 243 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITDRVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|222112634|ref|YP_002554898.1| 16S ribosomal RNA methyltransferase rsme [Acidovorax ebreus TPSY] gi|221732078|gb|ACM34898.1| protein of unknown function DUF558 [Acidovorax ebreus TPSY] Length = 242 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 VLR++ GD + LFNG+ GEW + ++++G+S ++ +V S + + + ++ + N Sbjct: 27 QVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDVQVQVGSHSAVEREAARAVHLVVGMPAN 86 Query: 93 -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 R+D++++K+ E+G +I+P+ + + + ++A EQC +P Sbjct: 87 ERMDWLVEKATELGAASIQPIAAARSVLKLSGERAAKRQQHWQAIAVAACEQCGRNRVPS 146 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAILIGPEGGYHSE 203 ++ P +L L+ + A S S + A A V +L GPEGG ++ Sbjct: 147 VHAPLSLADWLRQPPADALAPDAARLLLSLRSGSRPLREAAAEAGAVWVLHGPEGGLTAQ 206 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231 E++ + F P SLG R+LR++TA+V Sbjct: 207 EEDAALAQGF-APASLGARVLRAETASV 233 >gi|225076881|ref|ZP_03720080.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens NRL30031/H210] gi|224951767|gb|EEG32976.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens NRL30031/H210] Length = 241 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +VDF L + + + +L +VLR+K + I+LFNG +G+ + V + R Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNG-NGKAYPALPEVLEKRR 58 Query: 67 FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V T ++ + + R+D+ +QKSVE+G+ IRPVI+ Sbjct: 59 ASVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R + +SA EQ +P + P TT L+ + S N Sbjct: 119 ERAEKRVERWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQLPQETTKLLM-----SLNR 173 Query: 178 LEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +KL + V ++GPEGG+ +E++ F + ++LG R+LR++TA++AA+A Sbjct: 174 AQKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|292493337|ref|YP_003528776.1| hypothetical protein Nhal_3352 [Nitrosococcus halophilus Nc4] gi|291581932|gb|ADE16389.1| protein of unknown function DUF558 [Nitrosococcus halophilus Nc4] Length = 243 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL I + ++ VLR++ G + LF+G+ E+ + + V K S Sbjct: 2 RVPRIYSSLPLSIGSSVVLDERALQHVVRVLRLRAGAELWLFDGRGTEYRAVLETVEKRS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 ++ E R+ D+ + R+DY +QK+VE+G+ I P+ T + H + Sbjct: 62 AEARILERMERNVESPLDIILGQGISRGERMDYALQKAVELGVSGIVPLFTERSA-VHLS 120 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R+ R ISA EQC P + P +L L + H V D S Sbjct: 121 GERLEKRLRHWRGVVISACEQCGRNYTPGVDTPRSLAAFLGDC-HAGLAVLLDPR--SHR 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ L + + +LIGPEGG E + F+ +SLGPR+LR++TA VAA+ Sbjct: 178 PLKTLPSPLG-KRLILLIGPEGGLSEVEVKEAQQAGFID-VSLGPRVLRTETATVAALTA 235 Query: 237 VQAICGD 243 +Q + GD Sbjct: 236 LQLLWGD 242 >gi|89074101|ref|ZP_01160600.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34] gi|89050037|gb|EAR55563.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34] Length = 225 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 40/240 (16%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ V+RM+ G +L+F+G + E+ + I+ K +VE QSR + Sbjct: 3 SDDAANHVGRVMRMQAGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVENN------ 55 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129 I SP+ + +++++ IQKSVE+G+ I P+I+ + +++ + Sbjct: 56 IESPLDIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLEQWQK 115 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHI 187 I+A EQC +P I P LE W C A+E G + +L ++I + Sbjct: 116 IAIAACEQCGRNVVPTIRPVMKLE----QW---C----AEEYDGLKLNLHPRAKYSINTL 164 Query: 188 P----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P N+ +LIGPEGG +EE F L LGPR+LR++T A+ A+ +Q GD Sbjct: 165 PTPVTNLRLLIGPEGGLSAEEIGMTEEYKFDEIL-LGPRVLRTETTAMTAITALQVRFGD 223 >gi|85711779|ref|ZP_01042835.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145] gi|85694394|gb|EAQ32336.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145] Length = 249 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 14/244 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R+F PL + + S D + + VLRM+EG + LF D + + ++ V K S + Sbjct: 5 RIFHPEPLTVNSTVSLSDDAFQHTIKVLRMQEGQALELFCNDDFNYAAVLTSVAKKSAQV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ + T+ ++ + + +R+D+ +QKSVE+G+ AI P+ + N DR Sbjct: 65 EITGAQLNSTESPLFVHLGQVVSRGDRMDFALQKSVELGVNAITPLFSERC-GVKLNGDR 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQ +P + P ++ +K ++ N +E Sbjct: 124 LEKKQQQWQKIVISACEQSGRSHVPIVLPAILVDDFVKTPFDGLRLTLDPYARVPLNQIE 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + I ++IGPEGG+ E E F P+ LGPRILR++TAA+ A+A +Q Sbjct: 184 GANLAQRI---QLMIGPEGGFTDIEVEHARHHHF-KPIRLGPRILRTETAAMTALAAIQY 239 Query: 240 ICGD 243 GD Sbjct: 240 EFGD 243 >gi|110803459|ref|YP_699307.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens SM101] gi|110683960|gb|ABG87330.1| RNA methyltransferase, RsmE family [Clostridium perfringens SM101] Length = 250 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76 T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K SI+ + ++ Sbjct: 14 THAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 + + + P K ++D ++QK VE+G+ I P IT + +DR+ + Sbjct: 74 SNLNITLFQGMP-KAAKMDLIVQKCVELGVLEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189 A +Q +P + P + +L+ D +V E G + + I N Sbjct: 133 EACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKN 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I++GPEGG+ E E L ++LGPRILR++TA ++L+Q GD Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246 >gi|326561136|gb|EGE11501.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 7169] Length = 247 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 119/246 (48%), Gaps = 30/246 (12%) Query: 7 LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL G+ A D H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 KS K++ +R+ ++ + + S + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117 Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 H DR ++ ++A EQC + +P I P LL W NCQ Sbjct: 118 AHLKYDRDFKKIAHWQSVAVAACEQCGMNIVPNIIAP----ILLDEWVANCQDELKLVLA 173 Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 SEN + K+ +P N+++LIG EGG E + FV P +G R+LR++TA Sbjct: 174 LSENNPAFNKI-----LPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227 Query: 230 AVAAMA 235 V A++ Sbjct: 228 PVVALS 233 >gi|169795277|ref|YP_001713070.1| hypothetical protein ABAYE1140 [Acinetobacter baumannii AYE] gi|184158858|ref|YP_001847197.1| hypothetical protein ACICU_02538 [Acinetobacter baumannii ACICU] gi|213158057|ref|YP_002320108.1| hypothetical protein AB57_2769 [Acinetobacter baumannii AB0057] gi|215482810|ref|YP_002325013.1| RNA methyltransferase family protein [Acinetobacter baumannii AB307-0294] gi|301346012|ref|ZP_07226753.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter baumannii AB056] gi|301510423|ref|ZP_07235660.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter baumannii AB058] gi|301595608|ref|ZP_07240616.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter baumannii AB059] gi|332850384|ref|ZP_08432704.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013150] gi|332871823|ref|ZP_08440246.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013113] gi|169148204|emb|CAM86067.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183210452|gb|ACC57850.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|213057217|gb|ACJ42119.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213988086|gb|ACJ58385.1| RNA methyltransferase family protein [Acinetobacter baumannii AB307-0294] gi|332730655|gb|EGJ61966.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013150] gi|332731152|gb|EGJ62452.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013113] Length = 240 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENS 177 D+ + I+A EQC + +P + P L L + D + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPIALHEWLNSSDLPVSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G RILR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRILRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|73542528|ref|YP_297048.1| hypothetical protein Reut_A2843 [Ralstonia eutropha JMP134] gi|72119941|gb|AAZ62204.1| Conserved hypothetical protein 46 [Ralstonia eutropha JMP134] Length = 249 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 16/223 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQS-DVQYIFSPIKT 91 VLR+ GD I LF+G+ G + + +GK +V + ++T+ V Sbjct: 31 QVLRLAPGDAITLFDGRGGSHAATLLDLGKRHALARVGERDNTETEPPFRVMLAQGLAGG 90 Query: 92 NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 +++D++I+K+VE+G+ AI+P V+ + +A EQC LP Sbjct: 91 DKMDWLIEKAVELGVTAIQPLQAARSVVRLSGDRAQKRQAHWQALVEAACEQCGRNRLPA 150 Query: 146 IYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 + P T L+ L+ +++ AD++ + + ++ +A V +LIGPEGG Sbjct: 151 VAPVTNLDTWLRAAGEGNRLLVSPRADQSLPAYAAANRVSLLAG--GVTLLIGPEGGLAP 208 Query: 203 EEKET-LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE++ LH+ T +SLGPRILR++TA +A +A + A+ G + Sbjct: 209 EEEDAALHA--GFTAVSLGPRILRTETAGLACLATLNALLGGF 249 >gi|168215653|ref|ZP_02641278.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC 8239] gi|182382065|gb|EDT79544.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC 8239] Length = 250 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76 T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K SI+ + ++ Sbjct: 14 THVKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 + + + P K ++D ++QK VE+G+ I P IT + +DR+ + Sbjct: 74 SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189 A +Q +P + P + +L+ D +V E G + + I N Sbjct: 133 EACKQSKRTVIPQVLEPMDFKEVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKN 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I++GPEGG+ E E L ++LGPRILR++TA ++L+Q GD Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246 >gi|218767503|ref|YP_002342015.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis Z2491] gi|121051511|emb|CAM07805.1| hypothetical protein NMA0528 [Neisseria meningitidis Z2491] gi|319409765|emb|CBY90071.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 241 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F T ++LG RILR++T A+AA+A +Q + GD+ Sbjct: 199 EQEEQQAFDAGFQT-VTLGKRILRTETVALAALAAMQTLWGDF 240 >gi|121596395|ref|YP_988291.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax sp. JS42] gi|120608475|gb|ABM44215.1| protein of unknown function DUF558 [Acidovorax sp. JS42] Length = 242 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 11/208 (5%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 VLR++ GD + LFNG+ GEW + ++++G+S ++ +V S + + + ++ + N Sbjct: 27 QVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDVQVQVGSHSAVEREAARAVHLVVGMPAN 86 Query: 93 -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 R+D++++K+ E+G +I+P+ + + + ++A EQC +P Sbjct: 87 ERMDWLVEKATELGAASIQPIAAARSVLKLSGERAAKRQQHWQAIAVAACEQCGRNRVPS 146 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAILIGPEGGYHSE 203 ++ P +L L+ + A S S + A A V +L GPEGG ++ Sbjct: 147 VHAPLSLADWLRQPPADALAPDAARLLLSLRSGSRPLREAAAQGGAVWVLHGPEGGLTAQ 206 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231 E++ + F P SLG R+LR++TA+V Sbjct: 207 EEDAALAQGF-APASLGARVLRAETASV 233 >gi|260549771|ref|ZP_05823988.1| RNA methyltransferase [Acinetobacter sp. RUH2624] gi|260407288|gb|EEX00764.1| RNA methyltransferase [Acinetobacter sp. RUH2624] Length = 240 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 117/240 (48%), Gaps = 16/240 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + I + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIESFNPANRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D+ + I+A EQC + +P + P + L W + ++ + E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPIS----LNEWLSSSELPVSKFVLAPEK-- 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E+ ++ I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 175 EQKDVLSGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 >gi|309783107|ref|ZP_07677826.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA] gi|308918215|gb|EFP63893.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA] Length = 249 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R FVD PL T ++ HVLR+ GD++ LF+G E+ +++ + K R Sbjct: 3 LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINK--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + ++ +Y + + +++D++I+K+VE+G+ A+ P+ T Sbjct: 60 DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERAVVRLS 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + +A EQC +P + P +TL + W + A S Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVAPVSTL----REWLAAARSTDAPRVLLSPR 175 Query: 177 SLEKLHAIA-------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A + +LIGPEGG +E+ S F+ PL+LG RILR+++A Sbjct: 176 GTQSLTQWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + A+ G++ Sbjct: 235 ALVAVSALHAVLGEF 249 >gi|298369579|ref|ZP_06980896.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014 str. F0314] gi|298282136|gb|EFI23624.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014 str. F0314] Length = 241 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88 HVLR+K + I+LFNG + +++ + K I + E + S + VQ + S Sbjct: 27 HVLRLKPDEEIVLFNGDGKAYPARLGVLEKRRATAEILREEEADNESPLNITLVQAVSS- 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 R+D+ +QKSVE+G+G IRPV++ + + R + +SA EQ T Sbjct: 86 --GERMDFTLQKSVELGVGEIRPVLSERCVVRLDGERAAKRVARWQEIVVSACEQSGRNT 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGGYH 201 +P + P + + L+ + S + +KL+ I + I ++GPEGG+ Sbjct: 144 VPQVLPLVSYQEALRQMPSEKTKLLM-----SVRNAQKLNRITPSSDGLIFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E++ F ++LGPR+LR++TA++AA+A +Q + GD+ Sbjct: 199 ESEEQQAFGAGF-QAVTLGPRVLRTETASLAAIAAMQTLWGDF 240 >gi|262278363|ref|ZP_06056148.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258714|gb|EEY77447.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 240 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 16/240 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGLTIQLTETVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIESFNPTNRSAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D+ + I+A EQC + +P + P + L W + Q+ + E Sbjct: 121 RDQKKLDHWQAIAIAACEQCGLNLVPEVLAPIS----LSEWLSSTQLPASKFVLAPEK-- 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 175 EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 >gi|294634386|ref|ZP_06712923.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685] gi|291092194|gb|EFE24755.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685] Length = 243 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 20/248 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + R++ PL I + S D +++ VLRM G + LF+G + + ++I S KS+ Sbjct: 3 IPRIYHPQPLSIPGEVNLSDDAANHVGRVLRMGPGHALQLFDGSNRVFDAEIVSADKKSV 62 Query: 66 RFK---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 R + V ++R + + S + ++++ IQKS+E+G+ I P+I+ Sbjct: 63 RVRLTAVHEENRESPLHLHLGQVMS--RGEKMEFTIQKSIELGVNVITPLISERC-GVRL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R+ + I+A EQC +L I P TLE D ++ S Sbjct: 120 DAERLAKKQQQWQKIAIAACEQCGRNSLALIRPAMTLEAWCAEPDDGLRLNLHPRASASI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + + V +LIGPEGG + E F T + LGPR+LR++T A+ A+ Sbjct: 180 NTLPQ-----PLSRVRLLIGPEGGLSASEIAMTADYHF-TDILLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|240015737|ref|ZP_04722277.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA6140] Length = 241 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K N +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSENTRLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|193077877|gb|ABO12758.2| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978] Length = 240 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 18/241 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENS 177 D+ + I+A EQC + +P + P +L L + D + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPEK------ 174 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E+ +A I P +A+LIGPEGG E + F+ +G R+LR++TA V A+++ Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232 Query: 237 V 237 + Sbjct: 233 L 233 >gi|319639002|ref|ZP_07993760.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102] gi|317399906|gb|EFV80569.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102] Length = 241 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 24/251 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +VDF L + + + +L +VLR+K + I+LFNG +G+ + V + R Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNG-NGKSYPALPEVLEKRR 58 Query: 67 FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V T ++ + + R+D+ +QKSVE+G+ IRPVI+ Sbjct: 59 ASVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R + +SA EQ +P + P TT L+ ET S Sbjct: 119 ERAEKRVARWQEIVVSACEQSGRNIVPRVLPLTTYAQALRQ--------LPQETAKLLMS 170 Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + ++ + V ++GPEGG+ +E++ F + ++LG R+LR++TA++AA Sbjct: 171 LNRAQKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAA 229 Query: 234 MALVQAICGDW 244 +A +Q + GD+ Sbjct: 230 IAAMQTLWGDF 240 >gi|87121181|ref|ZP_01077072.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121] gi|86163673|gb|EAQ64947.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121] Length = 244 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 19/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R++VD PL + + ++ VLR+K +++LFNG+ G++ +K+ V K S Sbjct: 3 IPRIYVDLPLQESSVFDLPQASFQHVCKVLRLKNDYSLILFNGQGGQYQAKLINVEKRSA 62 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + +V YQ+ V + + R+DY IQK+VE G+ I+P+ + + N Sbjct: 63 QVEVLNYQALENESPIKVTLGQTLSRGERMDYAIQKAVEAGVHRIQPLFSERCE-VKLNT 121 Query: 125 DRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +R+ + ISAAEQ +P + P L +W NC+ + + +S Sbjct: 122 ERLDKKIQHWQQIAISAAEQSGRGHVPEVLSPIN----LLDWTSNCKDML--KITMHHHS 175 Query: 178 LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + ++ + V++LIGPEGG E E F P++LG R+LR++TA V + Sbjct: 176 AKPISEMSEPEDKAVSVLIGPEGGLTESEVEASIQHGF-QPVALGSRVLRTETAPVVILT 234 Query: 236 LVQAICGD 243 + + GD Sbjct: 235 CINLLWGD 242 >gi|304316647|ref|YP_003851792.1| hypothetical protein Tthe_1189 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778149|gb|ADL68708.1| protein of unknown function DUF558 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 240 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 16/232 (6%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQS 80 + +GD H++ VLR K G +++ NGK+ +S + S+ K+ EY ++ + Sbjct: 12 RINGDDAHHIIDVLRFKIGTKLIISNGKNQYIVSILDIENSSVILKIIEEYNQVVESPIN 71 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 Y P K++++D +IQK E+G+ I PV T ++ +N + ++R + ++ A Sbjct: 72 ITLYQGLP-KSDKMDLIIQKCTEIGIKKIVPVETEFSTIKIKEKNIYNKINRWKKISLEA 130 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLEKLHAIAHIPNVAI 192 ++Q +P + P + L++ + C I + ET + K + A N+ + Sbjct: 131 SKQSGRSIVPDVLVPVGFKDALESLNEFDLCLIPYEKETNMRLKDVLKKNFNAK--NICV 188 Query: 193 LIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ E E + ++ + P++LGPRILR++TA + +++ GD Sbjct: 189 FIGPEGGFS--ENEIMAAIEYGAIPVTLGPRILRTETAGIVTSSIILYELGD 238 >gi|150390795|ref|YP_001320844.1| hypothetical protein Amet_3045 [Alkaliphilus metalliredigens QYMF] gi|149950657|gb|ABR49185.1| protein of unknown function DUF558 [Alkaliphilus metalliredigens QYMF] Length = 254 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 17/252 (6%) Query: 7 LKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + R FV P + Q + GD ++ VLR+ GD + + +G+ E++ +I + K Sbjct: 1 MNRFFV-VPSQVNQQARTISIVGDDVKHIGKVLRLVVGDLVEVCDGQALEYIGRIDEISK 59 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 + +E Q T+ ++ I K +++ +IQK+ EMG+ I PV+T T Sbjct: 60 EQVTLSIEKQENIFTEPPIQVRLYQGIPKATKMELIIQKTTEMGISDIIPVMTDRTIVQF 119 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DET 171 ++ ++R + A++Q +P I+ P T L+ + N V A ++T Sbjct: 120 NNEKDREKKVERWQKIADEASKQSKRGKIPRIHIPMTYTKALEACNENDLNVLAYEKEKT 179 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G + + L I + ++ I IGPEGG+ +E E S V ++LGPRILR++TA Sbjct: 180 MGLKALIASLVEITEVKSIGIWIGPEGGFTGKEIEKALSHD-VRSITLGPRILRTETAGF 238 Query: 232 AAMALVQAICGD 243 A ++++ GD Sbjct: 239 AVLSMLMYELGD 250 >gi|238754605|ref|ZP_04615959.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri ATCC 29473] gi|238707236|gb|EEP99599.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri ATCC 29473] Length = 243 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 20/248 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ PL T+ S D +++ VLRM EG ++ LF+G + + ++I +V K Sbjct: 3 IPRIYHPQPLSAHTELALSDDAANHVGRVLRMSEGHHLQLFDGSNQVFSAEIIHVDKKSV 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + ++S + + + ++++ IQKS+E+G+ I P+ +++ + Sbjct: 63 HVHLGEAALEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPL---FSERCGVKL 119 Query: 125 DRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 D R I+A EQC TLP I LE D + ++ S Sbjct: 120 DGERLAKKIQQWQKIAIAACEQCGRNTLPEIREAMQLEAWCAEQDDSLKLNLHPRASNSI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + V +LIGPEGG ++E E F T + LGPR+LR++T A+ A+ Sbjct: 180 NTLP-----LPVNRVRLLIGPEGGLTADEIEMTSHHGF-TDILLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|257095553|ref|YP_003169194.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048077|gb|ACV37265.1| protein of unknown function DUF558 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 254 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 16/246 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R PL + Q + VLR++ GD + LF G GE+ ++I+ + + +R Sbjct: 6 RFHCPVPLAVGAQVDLPEVVAQHAVKVLRLRRGDAVTLFTGAGGEYSARIAGI-ERLRVS 64 Query: 69 VEYQSRSQTKQSD---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 VE T++ + + + +++D +QK+VE+G+ PVI+R + Q Sbjct: 65 VEILQWLPTERESPLSITLVQALQAGDKMDMTVQKAVELGVDRFVPVISRRSVVRLADQR 124 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNC-QIVFADETCGSENS 177 + R ++ EQC LP + P +LE +L++ +++ A S Sbjct: 125 ALRRAEHWRGVVAASCEQCGRNRLPEVAIPESLEHWLMRPPPPGVLRLLLAPVASYSLAM 184 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A HI +L+G EGG EE L +L + LGPRILR++TA +AA+A + Sbjct: 185 LSGPSADGHI---ELLVGAEGGLAPEEVR-LAALAGFLSVRLGPRILRTETAGLAALAAI 240 Query: 238 QAICGD 243 Q + GD Sbjct: 241 QFLWGD 246 >gi|261379381|ref|ZP_05983954.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703] gi|284797829|gb|EFC53176.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703] Length = 241 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 24/251 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +VDF L + + + +L +VLR+K + I+LFNG +G+ + V + R Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNG-NGKAYPALPEVLEKRR 58 Query: 67 FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V T ++ + + R+D+ +QKSVE+G+ IRPVI+ Sbjct: 59 ASVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R + +SA EQ +P + P TT L+ ET S Sbjct: 119 ERAEKRVARWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQ--------LPQETTKLLMS 170 Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + ++ + V ++GPEGG+ +E++ F + ++LG R+LR++TA++AA Sbjct: 171 LNRAQKLSDVQPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAA 229 Query: 234 MALVQAICGDW 244 +A +Q + GD+ Sbjct: 230 IAAMQTLWGDF 240 >gi|332531193|ref|ZP_08407106.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC 19624] gi|332039300|gb|EGI75713.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC 19624] Length = 248 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 50/233 (21%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS-DVQYIFSPIKT 91 VLR++ GD + LFNG+ GEW + + +G+ S+ +V++ + + DV Sbjct: 31 QVLRLQPGDTLTLFNGRSGEWTATVLRMGRASVTVRVDHHHAVEREAPLDVHLAVGMPAN 90 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYT-----------QNTHYNMDRVRTYTISAAEQCDI 140 R+D++++K+VE+G+ +I+P+ T + + H+ I+A EQC Sbjct: 91 ERMDWLVEKAVELGVASIQPLQTERSVLRLSGERALKKQLHWQ-----GIAIAACEQCGR 145 Query: 141 LTLPFIY------------PPTTLEFLLKNWDHNC----QIVFADETCGSENSLEKLHAI 184 LP ++ PP + + D +C Q++ + + GS Sbjct: 146 NRLPPVHAVRPLQDVAAWSPPEVQRRFVLSLDDDCVPISQVLASRGSTGS---------- 195 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V +L GPEGG E++ + F P+SLG R LR++TA +AA+A++ Sbjct: 196 -----VLLLSGPEGGLSPTEEQAARAAGF-QPVSLGQRTLRAETAPLAALAVL 242 >gi|160873963|ref|YP_001553279.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS195] gi|160859485|gb|ABX48019.1| protein of unknown function DUF558 [Shewanella baltica OS195] gi|315266197|gb|ADT93050.1| protein of unknown function DUF558 [Shewanella baltica OS678] Length = 243 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ PL I Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 5 RIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKHVTV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + +S + + + +R+++ IQKSVE+G+ I P+ + N +R Sbjct: 65 KLLSCEANSSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQ +P + P L ++ N L+ Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|217969920|ref|YP_002355154.1| 16S ribosomal RNA methyltransferase RsmE [Thauera sp. MZ1T] gi|217507247|gb|ACK54258.1| protein of unknown function DUF558 [Thauera sp. MZ1T] Length = 246 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 17/227 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--S 87 H+ VLR+++G+ ++LF+G GE ++++ GK++ F ++R+ ++S ++ + + Sbjct: 25 HHALRVLRLRDGEAVVLFDGSGGEVDARLAVRGKAV-FARLGEARAVERESPLRIVLVQA 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 +++D+++QK+VE+G+ AI+PV + + + + I+A EQC Sbjct: 84 LASGDKMDWVVQKAVELGVHAIQPVQAERSVLRLAAERADKRVAHWQQVAIAACEQCGRN 143 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPE 197 +P I P L L V A + + A P V +L+GPE Sbjct: 144 RVPEIRPLQPLAHWLGAHRAAPGYVLAPGYVLAPGGAK---GFADEPEPKDEVHLLVGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG+ SE + + LGPR+LR++TA +AA+A +QA GD+ Sbjct: 201 GGW-SEGEMAAFDAAGCRRVRLGPRVLRTETAGLAAVAALQARWGDY 246 >gi|255318401|ref|ZP_05359634.1| RNA methyltransferase [Acinetobacter radioresistens SK82] gi|262378631|ref|ZP_06071788.1| RNA methyltransferase [Acinetobacter radioresistens SH164] gi|255304393|gb|EET83577.1| RNA methyltransferase [Acinetobacter radioresistens SK82] gi|262299916|gb|EEY87828.1| RNA methyltransferase [Acinetobacter radioresistens SH164] Length = 239 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 15/239 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + T + + +H+ VLR + GD+ LFNG+ GE+ + ++ + K Sbjct: 1 MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 S + + + K +R+DY+IQK+ E+G+ I+ + + R Y+ Sbjct: 61 SVAIRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D+ + I+A EQC + +P I PP L L+ ++V A +N L Sbjct: 121 RDQKKLDHWQAVVIAACEQCGMNRIPEILPPVPLTDWLQQNLPATRLVLAPNK-RQQNVL 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++A+LIGPEGG E + + F +G RILR++TA V A++++ Sbjct: 180 TDAQT-----DLALLIGPEGGLSEAEIDMANHAGFKN-WCIGERILRTETAPVVALSIL 232 >gi|297539576|ref|YP_003675345.1| hypothetical protein M301_2406 [Methylotenera sp. 301] gi|297258923|gb|ADI30768.1| protein of unknown function DUF558 [Methylotenera sp. 301] Length = 244 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 14/245 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R F L I K S + + LR+ GD I LFNG ++ ++ V KS + Sbjct: 5 RFFSTEDLVIGATVKLSENAATHATRALRLNAGDLIHLFNGDGFDYACELIVVKKSEVIA 64 Query: 68 KVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 K+ Q+R ++ + +R+DY IQK+VE+G+ I+P+ T + + Sbjct: 65 KINASQARDTESPLNITLLQGISSGDRMDYSIQKAVELGVKQIQPIATERSVVKLSAERA 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++ + ISA EQC T+P + P TL NW + A + ++ Sbjct: 125 EKRLEHWQNIVISACEQCGRATIPQVLAPKTL----ANWLSSNSASSATRILLNPIGAKR 180 Query: 181 LHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + + +LIG EGG E S F + + LGPRILR++TA A+A +Q+ Sbjct: 181 LAELDKPSGEIQLLIGAEGGLSQAEINLALSQDFQSVI-LGPRILRTETAGPTAIATLQS 239 Query: 240 ICGDW 244 + GD+ Sbjct: 240 LWGDF 244 >gi|88859066|ref|ZP_01133707.1| putative RNA methyltransferase with a deep trefoil knot [Pseudoalteromonas tunicata D2] gi|88819292|gb|EAR29106.1| putative RNA methyltransferase with a deep trefoil knot [Pseudoalteromonas tunicata D2] Length = 243 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 30/233 (12%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ VLRM GD + LFNG+ G++L++++ V K V Q S ++ DV+ Sbjct: 23 DAAGHIGRVLRMSIGDKVCLFNGQGGQFLAELTEVSKK---GVNVQIES-FEEHDVE--- 75 Query: 87 SPIKT---------NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTY 130 SP+K +++D+ IQKSVE+G+ I P+ T + DR+ + Sbjct: 76 SPLKIHLGQGISRGDKMDFTIQKSVELGVTEITPLFTERC-GVKLSGDRLEKKHQQWQKI 134 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+AAEQ + I+PP LE L ++ +E+S++ + + Sbjct: 135 AIAAAEQSGRNFVTVIHPPIKLEQWLSQQSDELKLTLHPR---AEHSIKTITKPTE--GL 189 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 ++GPEGG+ E + F+ + LGPRILR++TAA+ ++ +Q GD Sbjct: 190 RFIVGPEGGFTDAEMLMTKNSGFID-IRLGPRILRTETAALTVLSALQLEFGD 241 >gi|241664175|ref|YP_002982535.1| hypothetical protein Rpic12D_2592 [Ralstonia pickettii 12D] gi|240866202|gb|ACS63863.1| protein of unknown function DUF558 [Ralstonia pickettii 12D] Length = 249 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R FVD PL T ++ HVLR+ GD++ LF+G E+ +++ + K R Sbjct: 3 LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINK--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + ++ +Y + + +++D++I+K+VE+G+ A+ P+ T Sbjct: 60 DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAVTPLQTERAVVRLS 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + +A EQC +P + P +TL + W + A S Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVAPVSTL----REWLAAARSTDAPRVLLSPR 175 Query: 177 SLEKLHAIA-------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A + +LIGPEGG +E+ S F+ PL+LG RILR+++A Sbjct: 176 GTQSLTQWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + A+ G++ Sbjct: 235 ALVAVSALHAVLGEF 249 >gi|110798700|ref|YP_696706.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens ATCC 13124] gi|110673347|gb|ABG82334.1| RNA methyltransferase, RsmE family [Clostridium perfringens ATCC 13124] Length = 250 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 12/235 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76 T +G+ ++ VLR+K G+ +++ N + E+L ++ V K SI+ + ++ Sbjct: 14 THATITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 + + + P K ++D ++QK VE+G+ I P IT + +DR+ + Sbjct: 74 SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189 A +Q +P + P + +L+ D +V E G + + I N Sbjct: 133 EACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSIKN 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I++GPEGG+ E E L ++LGPRILR++TA ++L+Q GD Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246 >gi|152981289|ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp. Marseille] gi|151281366|gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 241 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 17/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + PL I H++ V+R+ GD+I LFNG+ GE+ + I+ + K R Sbjct: 1 MPRFYCPQPLAIGAVITLPDHVAHHI-QVVRLGSGDHITLFNGEGGEYTATITTIEKK-R 58 Query: 67 FKVE---YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 E + R V + + +++D++I+K+VE+G+ AI+P V+ Sbjct: 59 VTAEIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQRCVVRLSA 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M + ++A+EQ L + P ++ D + +I+ + +E S Sbjct: 119 ERAAKKMQHWQGVIVAASEQSGRNRLAALAEPVDFNQWVQQKDLHKRILLSPR---AEQS 175 Query: 178 LEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L A H P +VA++IGPEGG+ ++++E L LS+GPR+LR++TA ++A+A Sbjct: 176 LSDW-ARHHPPQSVALMIGPEGGF-TDKEEDLALAQGALMLSMGPRVLRTETAGLSALAA 233 Query: 237 VQAICGD 243 + A+ G+ Sbjct: 234 LNAVWGE 240 >gi|332799054|ref|YP_004460553.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter sp. Re1] gi|332696789|gb|AEE91246.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter sp. Re1] Length = 252 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS---KISYVGK 63 + R FV L I Q SG+ H++ VLR + GD I + +G + E + I G Sbjct: 1 MSRFFVFQDLNINDQITISGEDAHHIIRVLRYQTGDVIHISDGANTESIGVILDIDTQGP 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S++ K+ +++ ++ + K + D+++QK+ E+G+ P+IT+ T Sbjct: 61 SVKLKIIEKNKVESISPYITLFQGLPKGEKFDWILQKNTEIGVSEFIPIITQRTVVNISP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGS- 174 + +R AA+QC + +P I + + L+ C I + +E S Sbjct: 121 SKLGHRKNRWGKIVKEAAKQCMRMDIPKIGDVLSFDLALQEIKKYSLCIIPWENEKEISI 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + ++ ++ I +A+ IG EGG+ +E E + V P+SLGPRILR++TA + A Sbjct: 181 RHIIKDMNENKSISKIAVFIGSEGGFSKDEVEKAKAAGAV-PVSLGPRILRTETAGIVAC 239 Query: 235 ALVQAICGD 243 +++ GD Sbjct: 240 SVLMYEIGD 248 >gi|322417811|ref|YP_004197034.1| hypothetical protein GM18_0269 [Geobacter sp. M18] gi|320124198|gb|ADW11758.1| protein of unknown function DUF558 [Geobacter sp. M18] Length = 246 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 17/231 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 +G+ Y ++A VLR+K+G + L + I VG K++ ++ S ++ +Q Sbjct: 19 TGELYRHMARVLRLKQGAEVELIDADGRRHAGVIEEVGAKALTVRITVSSAPPREEPGLQ 78 Query: 84 ---YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISA 134 Y P K +LD ++QK E+G+ A R V+ + T R A Sbjct: 79 VTLYQGLP-KGEKLDLILQKCTELGVAEVVTFDAARSVVKLRGEKTASKQARYEKIVQEA 137 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSLEKLHAIAHIPNVAI 192 A Q T P + TL+ +LK+ H +++ +E + L K A +VA+ Sbjct: 138 ARQSGRCTPPRVAIGGTLKEVLKDAGHTVKLLLWEGEEKTTLRDCLGKYEAP---ESVAV 194 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 ++GPEGG +EE E + F TP++LG RILR++TA +A ++++Q GD Sbjct: 195 VVGPEGGLSAEEVEQALACGF-TPVTLGKRILRTETAGLAMISILQFHWGD 244 >gi|117617899|ref|YP_857627.1| hypothetical protein AHA_3127 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559306|gb|ABK36254.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 243 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 36/238 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 S D +++ VLRM+ G + LFNG ++ + I+ VG KS+ ++ + D Sbjct: 21 SEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKSVEVTID--------RCDTH 72 Query: 84 YIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV------- 127 + SP+ + +++D+ IQKSVE+G+ I P+ + DR+ Sbjct: 73 SVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERC-GVKLPADRLEKKREQW 131 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + ISA EQC T+P + P L+ L + ++ S N+L I Sbjct: 132 QKVVISACEQCGRNTVPEVRMPMELDAWLAEETNELKLNLHPRAPYSINTLP-------I 184 Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P V +LIGPEGG S+E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 185 PEHGVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITALQCRFGD 241 >gi|222053521|ref|YP_002535883.1| protein of unknown function DUF558 [Geobacter sp. FRC-32] gi|221562810|gb|ACM18782.1| protein of unknown function DUF558 [Geobacter sp. FRC-32] Length = 246 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R VD + +G Y ++A VLR+K+G ++L +G+ GE+ I + S+ Sbjct: 1 MRRFIVDKRDIDDAEAVITGYLYRHMAKVLRLKQGTAVMLTDGEGGEYEGVIESIDSTSL 60 Query: 66 RFKVEYQSRSQTKQSDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPV-----ITRYT- 117 R +V + Q I+ + K ++L+Y++QK E+G I P I R + Sbjct: 61 RVRVVRRETLMVDDGGPQITIYQGLPKGDKLEYILQKCTELGAAGIVPFAASRSIARISP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + +DR + AA Q T+P + L +L+ H+ +++ +E N Sbjct: 121 QRSAGRVDRWQKIAAEAARQSRRATVPRVSLADDLSQVLQLAQHSVKLLLWEEE--KANL 178 Query: 178 L-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L E L ++ ++ +LIGPEGG+ EE S F+ P+S+G RI+R++TA++ +++ Sbjct: 179 LRETLSGLSAPNDIGVLIGPEGGFSPEEAAAASSAGFI-PISMGRRIVRTETASLIILSI 237 Query: 237 VQAICGD 243 +Q GD Sbjct: 238 LQYHWGD 244 >gi|268593084|ref|ZP_06127305.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131] gi|291311353|gb|EFE51806.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131] Length = 243 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I T D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLQINTTISLGDDAANHVGRVLRMTAGQKLELFDGSNQTFSAEITEATKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 F S+ ++S + + + ++++ IQKSVE+G+ I P+++ Sbjct: 62 VFVHIENSQIDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P TLE D ++ S N+ Sbjct: 122 ERLEKKLLQWQKIAIAACEQCGRNRIPEIRPVQTLEAWCTENDGAFKVNLHPRATESINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----TELKKVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRLGD 241 >gi|94311915|ref|YP_585125.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus metallidurans CH34] gi|93355767|gb|ABF09856.1| conserved hypothetical protein DUF558 [Cupriavidus metallidurans CH34] Length = 247 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SI 65 R FVD L T + D VLR+ GD I LFNG+ G + ++ +GK S Sbjct: 4 RFFVDAALAADTVLELP-DAVVRHVQVLRLAPGDAITLFNGQGGSHPATLTEIGKRHASA 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119 S ++T + V +++D++I+K+VE+G+ AI+P V+ + Sbjct: 63 TLGTHDASEAETPFA-VTLAQGLAGGDKMDWLIEKAVELGVSAIQPLQAARSVVRLSGER 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSL 178 + +A EQC LP + P LE L + ++ + S L Sbjct: 122 ATKRQAHWQALIEAACEQCGRNRLPALAPVANLESWLTSVPATAARLALSPRASASLPEL 181 Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + A V +LIGPEGG EE++ F+ +SLGPRILR++TA + +A + Sbjct: 182 AQAEREAWRAGGVTLLIGPEGGLSPEEEDRARRAGFIG-VSLGPRILRTETAGLTCLATL 240 Query: 238 QAICGDW 244 AI G + Sbjct: 241 NAILGGF 247 >gi|46914675|emb|CAG21452.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 225 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 42/241 (17%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ V+RM+ G +LLF+G D E+ + IS K +V+ Q R++ Sbjct: 3 SDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK-NVEVDIQCRNENS------ 55 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------R 128 I SP+ + ++++ IQKSVE+G+ I P+I+ N +R + Sbjct: 56 IESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERC-GVKLNAERFEKKLSQWQ 114 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAH 186 ++A EQC +P I P LE +W C A+E G + +L ++I Sbjct: 115 KIVVAACEQCGRNVIPEIRPVMKLE----DW---C----AEEYDGLKLNLHPRANYSINT 163 Query: 187 IP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +P V +LIGPEGG +EE F L LGPR+LR++T A+ A+ +Q G Sbjct: 164 LPEPVTKVRLLIGPEGGLSAEEISMTEQYKFDEIL-LGPRVLRTETTAMTAITALQVRFG 222 Query: 243 D 243 D Sbjct: 223 D 223 >gi|319427610|gb|ADV55684.1| rRNA base methyltransferase, RsmE [Shewanella putrefaciens 200] Length = 243 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ PL I D ++ VLRM G+NI LFNG ++L++I GK Sbjct: 5 RIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKHVTV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + +S + + + +R+++ IQKSVE+G+ I P+ + N +R Sbjct: 65 KLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +SA EQ +P I P L ++ N L+ Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPLIRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|255020274|ref|ZP_05292342.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus caldus ATCC 51756] gi|254970194|gb|EET27688.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus caldus ATCC 51756] Length = 246 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 16/224 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY-IFS 87 H+L VLR + G + LF G ++ +++ GK V ++R + S +Q ++ Sbjct: 26 HHLLRVLRGRPGQELTLFTGDGRDYPAELLGARGKQALLAVG-RARWRDTGSPLQCCLWL 84 Query: 88 P-IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 P I+ R D+ +QK+ E+G A++PV+ R++ R R I+A EQ Sbjct: 85 PVIRAERWDWALQKATELGAWALQPVVCRHSLVPLAEARAPKRQQRWRDIVIAACEQSSA 144 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNVAILIGPEGG 199 +P + P L L + + +V D + G+ SL K L +A+L GPEGG Sbjct: 145 TRIPELRPAMALSELGPP-EVDLAVV-CDPSYGT--SLGKVLGTRRSARRIALLCGPEGG 200 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 H EE SL F+ LGPRILR++TA++ A+ L Q GD Sbjct: 201 LHPEELAWAESLGFLG-AHLGPRILRAETASITALTLAQGFLGD 243 >gi|229525160|ref|ZP_04414565.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae bv. albensis VL426] gi|229338741|gb|EEO03758.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae bv. albensis VL426] Length = 243 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S ++L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEAMKLNLHPRAKYSIHTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241 >gi|160915014|ref|ZP_02077227.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991] gi|158432813|gb|EDP11102.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991] Length = 266 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQ 83 + +Q H+++HVLRM+E D + + + ++ + + + + GK + ++ + T+ + + Sbjct: 37 NDEQAHHVSHVLRMRENDVVRIVDKENTMFFAHLLFEGKKVIAHLDQKIEDHTRNAVRIT 96 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD----RVRTYTISAAEQ 137 + IK + DY++QKS E+G+ I P + T + MD R + A EQ Sbjct: 97 LLQGMIKKEKWDYVLQKSAELGVDCIVPFTSSRTVVKAKEERMDKKLLRWNKILLEACEQ 156 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C TL + P L+ + I + D SE L I +V I IG E Sbjct: 157 CKRSTLVDLKEPCLLKDAARYKSELNIIAYEDADATSEKLHRLLAKYPKISSVTIAIGSE 216 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 GG+ EE L + + +SLG RILR++TAA+AA+ Sbjct: 217 GGFSKEEVSMLMEMGY-HRVSLGARILRAETAALAAI 252 >gi|187930070|ref|YP_001900557.1| hypothetical protein Rpic_3002 [Ralstonia pickettii 12J] gi|187726960|gb|ACD28125.1| protein of unknown function DUF558 [Ralstonia pickettii 12J] Length = 249 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R FVD PL T ++ HVLR+ GD+I LF+G E+ +++ + K R Sbjct: 3 LPRFFVDTPLAPNTTVTLDESVTRHI-HVLRLAAGDDICLFDGSGYEFRARLDAINK--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITR---YTQN 119 + ++ +Y + + +++D++I+K+VE+G+ A+ P+ T + Sbjct: 60 DATASLVDATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERGVVRLS 119 Query: 120 THYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + RV+ + +A EQC +P + P TL + W + A S Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPVVAPVATL----REWLATAKSTDAPRVLLSPR 175 Query: 177 SLEKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A + +LIGPEGG +E+ + F+ PL+LG RILR+++A Sbjct: 176 GAQSLTQWAVQSRTRIVGSGIVLLIGPEGGLSPDEEALAEAAGFL-PLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + A+ G++ Sbjct: 235 ALVAVSALHAVLGEF 249 >gi|146296762|ref|YP_001180533.1| hypothetical protein Csac_1755 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410338|gb|ABP67342.1| protein of unknown function DUF558 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 242 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 15/227 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDG--EWLSKISYVGKS-IRFKVEYQSRSQTK-QSDV 82 D +++ VLR +EG+ + N DG ++ +KI + K I+ +E + +Q + Q DV Sbjct: 22 DDLNHVVKVLRKREGE---VLNLCDGIYDYKAKILEISKDKIKVAIEEKVLNQREPQKDV 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQ 137 IK ++D +IQK+ E+G+ + PVI++ ++ + R + A +Q Sbjct: 79 FLFQCIIKNQKMDIIIQKATELGVKVLIPVISKRVVIDISEKEEKKIQRWQRIAKEAQKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C P I P + + D ++ E EN L ++I V ILIGPE Sbjct: 139 CLRPYSPQIQRPIEIGRVKDFLDELDLLIIPYE---KENKKTYLDINSNINRVGILIGPE 195 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG+ +E E L V +SLG RILRS+TAA++ +++V + G+ Sbjct: 196 GGFEEDEIEIFKDLQKVRIVSLGKRILRSETAAISVISIVMHLLGEM 242 >gi|193211908|ref|YP_001997861.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobaculum parvum NCIB 8327] gi|193085385|gb|ACF10661.1| protein of unknown function DUF558 [Chlorobaculum parvum NCIB 8327] Length = 247 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 17/229 (7%) Query: 21 QGKAS--GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77 +G+AS G+++H+LA VLR +EGD + + +G + +GKS ++ + R Sbjct: 15 RGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQGSIRNPRRVPP 74 Query: 78 KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130 ++ V S +K R D+ ++K+ E+G+ I P+IT+ T +T +R R Sbjct: 75 PETRVSVAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKKIDRKAERWRNI 134 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 SAA Q LP + P + + L+ ++ +++ + SE + V Sbjct: 135 VHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLIAHE----SEEAFGPFEPAGQC--V 188 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 IGPEGG+ SE + + V P+S G +LR++TA V A+ALV+A Sbjct: 189 LFFIGPEGGF-SEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRA 236 >gi|188585812|ref|YP_001917357.1| protein of unknown function DUF558 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350499|gb|ACB84769.1| protein of unknown function DUF558 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 240 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 28/228 (12%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF--SP 88 + VLR+K GD ++L +GK G S I+ +G+ I F++E + K++ ++ S Sbjct: 1 MTRVLRLKIGDRVILLDGKGGACFSFINRLGEGQIEFELE-EPLIDNKEAPIRITLAQSL 59 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---------MDRVRTYTISAAEQCD 139 IK + ++++QK E+G P+I++ T+ N + R R +AAEQC Sbjct: 60 IKKDNFEFVLQKGTELGATEFYPLISQRTEVNLLNKSDKKVSKKLTRWREIVKNAAEQCQ 119 Query: 140 ILTLPFIYPPTTLEFLLKNW-------DHNCQIVFADETCGSENS-LEK-LHAIAHIPNV 190 LP I+ P E LKN +I+ ++ EN+ L+K L I P+ Sbjct: 120 RQVLPLIHYPVNFEKYLKNNNENSNNNGSRLKIMCHEQ----ENTPLKKVLKTIETPPSS 175 Query: 191 AI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 AI LIGPEGG+ E + F + +S+GPRILR++TA + A++ + Sbjct: 176 AIILIGPEGGFSHNEVDLAREQGF-SSVSMGPRILRAETAGIVAVSAI 222 >gi|308188039|ref|YP_003932170.1| UPF0088 protein yggJ [Pantoea vagans C9-1] gi|308058549|gb|ADO10721.1| UPF0088 protein yggJ [Pantoea vagans C9-1] Length = 243 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ PL I ++ D +++ VLRM G + LF+G + + ++I++V K R Sbjct: 3 IPRIYHAGPLEIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKK-R 61 Query: 67 FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 KV +S+ ++S + + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 62 VKVSVTESQPDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I TLE D ++ S Sbjct: 119 LDAERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|134094087|ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas arsenicoxydans] gi|133737990|emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 19/225 (8%) Query: 31 YLAH---VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE---YQSRSQTKQSDVQY 84 ++AH V+R+ GD I LFNG+ GE+ + IS + K R E ++ R + Sbjct: 21 HVAHHIQVIRLSAGDAITLFNGEGGEYTATISTIEKK-RVTAEIKIFEPREVELPYAITL 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 + + +++D++I+K+VE+G A++P V+ + M + I+A+EQ Sbjct: 80 AQALPEASKMDWIIEKAVELGAHALQPLASQRCVVRLSAERAAKKMQHWQGIIIAASEQS 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197 L + P D + +I+ + +E SL A H P +VA++IGPE Sbjct: 140 GRNRLTTLAEPADFNQWATQQDLHVRIMLSPR---AEQSLSDW-ARHHPPQSVALMIGPE 195 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 GG+ +E++ET LS+GPR+LR++TA +AA+A + A+ G Sbjct: 196 GGF-TEKEETQAIANGALMLSMGPRVLRTETAGMAAIAALNAVWG 239 >gi|332285304|ref|YP_004417215.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7] gi|330429257|gb|AEC20591.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7] Length = 247 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + PL T + H+ VLR+K G +I+LF+G+ G++ + + GK Sbjct: 6 ISRFYCATPLLPNTSIELPAALAHHAVRVLRLKTGSDIILFDGQGGQYTATLEITGKQAH 65 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQN 119 ++ Y+ + + +++D++++K+VE+G + A R V+ + Sbjct: 66 ARLGGYEPVEAELTGHITLVQGIPSGDKMDWVVEKAVELGASRIVPLAAQRSVLQLSGER 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSL 178 +D R + +A+EQC + + P TL+ + D + I+F GS L Sbjct: 126 LRKRLDHWRRISQAASEQCGRNRIMEVASPLTLQQYIAASDADPASILFCHP--GSSRKL 183 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + A+ ++ +++GPEGG+ S+E+ L + +TP+ G R+LR++TA +A +A V Sbjct: 184 AQ-AALEAGNSLTLVVGPEGGW-SDEELALMAKHQLTPVGFGARVLRTETAGLALIAAVS 241 Query: 239 AICG 242 + G Sbjct: 242 TLRG 245 >gi|325204878|gb|ADZ00332.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis M01-240355] Length = 241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLADIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|309379533|emb|CBX21899.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|268317477|ref|YP_003291196.1| hypothetical protein Rmar_1925 [Rhodothermus marinus DSM 4252] gi|262335011|gb|ACY48808.1| protein of unknown function DUF558 [Rhodothermus marinus DSM 4252] Length = 239 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 15/224 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 D+ H+ VLR + GD +++ +G G ++ V + ++ +V ++R + + Sbjct: 22 DEAHHAVRVLRHRPGDEVIVVDGVGGWHRLRLELVDRQGVQGRV-LETRRDVGEPPYRLT 80 Query: 86 FSPI---KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +T R + ++K+VE+G+ AI P++T T+ TH+ +R R I+A +QC Sbjct: 81 IGLALLKQTARFETFLEKAVELGVAAIVPLLTARTERTHFRPERARRLLIAAMKQCGRSR 140 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEGGY 200 LP ++ P +L D + E + +H + P + +L+GPEGG+ Sbjct: 141 LPLLHAPRPFAEVLH--DPAALRLLCHEQ--PDRPRHPIHELLRRPVGDALVLVGPEGGF 196 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAA-VAAMALVQAICGD 243 S+E + F T +SLG R LR++TAA VAA A + IC D Sbjct: 197 TSDEVLQAEAAGFQT-VSLGARRLRAETAALVAASAFL--ICQD 237 >gi|261393256|emb|CAX50882.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|59802454|ref|YP_209166.1| hypothetical protein NGO2160 [Neisseria gonorrhoeae FA 1090] gi|240079873|ref|ZP_04724416.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA19] gi|240127370|ref|ZP_04740031.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268596016|ref|ZP_06130183.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268685742|ref|ZP_06152604.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|293397817|ref|ZP_06642023.1| ribosomal RNA small subunit methyltransferase E [Neisseria gonorrhoeae F62] gi|59719349|gb|AAW90754.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268549804|gb|EEZ44823.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268626026|gb|EEZ58426.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291611763|gb|EFF40832.1| ribosomal RNA small subunit methyltransferase E [Neisseria gonorrhoeae F62] Length = 241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K N +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSENTKLIM------SINRACKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|308048318|ref|YP_003911884.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM 9799] gi|307630508|gb|ADN74810.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM 9799] Length = 243 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 32/255 (12%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL Q D +++ VLRM+ G ++LFNG ++ + I GK Sbjct: 2 RVPRIYQPVPLAAGQQLALDDDGANHIGRVLRMQPGQAVMLFNGDGQQYPAIIDEAGKK- 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY 116 V QS Q ++ SP+ + ++++ IQKSVE+G +I P+ + Sbjct: 61 NVLVTVQSVEQ------HHVESPLALHLGQVISRGEKMEFTIQKSVELGAASITPLWSER 114 Query: 117 TQNTHYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169 DR+ + I+A EQC +P + P L+ + ++ Sbjct: 115 C-GVKLAGDRLDKKVAQWQKIAIAACEQCGRNVVPEVRPVMRLDQWMAEPFEGLKLNLHP 173 Query: 170 ETCGSENSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 S N+L E + A+ +LIGPEGG +EE F T + LGPR+LR++T Sbjct: 174 RAEYSINTLPEPVQALR------LLIGPEGGLSAEEIAAAREFDF-TDILLGPRVLRTET 226 Query: 229 AAVAAMALVQAICGD 243 AA+ AM +Q GD Sbjct: 227 AALTAMTALQVRFGD 241 >gi|294142457|ref|YP_003558435.1| hypothetical protein SVI_3686 [Shewanella violacea DSS12] gi|293328926|dbj|BAJ03657.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 242 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 120/256 (46%), Gaps = 36/256 (14%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65 + R++ D PL + + ++ VLRM +G+ I LFNG + ++L++ IS K++ Sbjct: 3 IPRIYQDSPLAVGDTLALHDEAASHIGRVLRMSQGEQISLFNGSEHDYLAEIISASKKNV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ S + ++ ++ I + +R+D+ IQKSVE+G+ I P+ + + Sbjct: 63 SVKILSSSINSSESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + + I A EQ +P I P +LE W CG + Sbjct: 123 RLEKKIHQWQKIVIGACEQSGRSRVPEIRPAMSLE----AW------------CGEQTDS 166 Query: 179 EKL-------HAIA----HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 KL H I +P V +LIGPEGG E F T + LGPR+LR++ Sbjct: 167 LKLNLHPRASHGIQGLSLDVPKVRLLIGPEGGLSETEILKTEQDKF-TDILLGPRVLRTE 225 Query: 228 TAAVAAMALVQAICGD 243 TAA+ A++ +Q GD Sbjct: 226 TAALTAISALQLKFGD 241 >gi|183596310|ref|ZP_02958338.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827] gi|188023914|gb|EDU61954.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827] Length = 243 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I T D +++ VLRM G + LF+G + + ++IS K Sbjct: 2 RIPRIYHPEPLQINTTIALGDDAANHVGRVLRMTAGQKLELFDGSNQVFCAEISEATKKK 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S + + + ++++ IQKSVE+G+ I P+++ Sbjct: 62 VSVNIIDSHVDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDP 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P I P +LE D ++ S N+ Sbjct: 122 ERLEKKRQQWQKIAIAACEQCGRNRIPQIRPVQSLEAWCAEEDGAFKVNLHPRATQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + V +LIGPEGG EE + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----AELNKVRLLIGPEGGLSEEEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRLGD 241 >gi|240114827|ref|ZP_04728889.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID18] gi|260441357|ref|ZP_05795173.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae DGI2] gi|268600483|ref|ZP_06134650.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291044717|ref|ZP_06570426.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268584614|gb|EEZ49290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291011611|gb|EFE03607.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K N +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSENTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+ +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAITAMQTLWGDF 240 >gi|251779327|ref|ZP_04822247.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083642|gb|EES49532.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 254 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 16/239 (6%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 T+GK GD ++ VLR+ EG+ ++L N + E+L +I VGK + S + Sbjct: 14 TEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIESVGKQEVIVNILEELSTNNE 73 Query: 80 SDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS 133 S V +F + K ++D ++QK E+G+ P+IT + ++R+ + Sbjct: 74 SRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGEFKKLERLNRIALE 133 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLH----AIAH 186 AA+Q +P + + L I+ E G ++ +++L + Sbjct: 134 AAKQSKRSIIPNVREVVEFDEALNELQRLDLILVPYENAENFGFKSLVKELSDKNVDLNS 193 Query: 187 IPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I N+ ++IGPEGG+ E ETL H ++ ++LG RILR++TA A +L+Q D Sbjct: 194 IENIGVVIGPEGGFEESEIETLKHKGAYI--ITLGNRILRTETAGFVATSLIQYELADL 250 >gi|217972024|ref|YP_002356775.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS223] gi|217497159|gb|ACK45352.1| protein of unknown function DUF558 [Shewanella baltica OS223] Length = 243 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R+F PL I Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 5 RIFQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKHVTV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +S + + + +R+++ IQKSVE+G+ I P+ + N +R Sbjct: 65 KLLSCEVNLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +SA EQ +P + P L ++ N L+ Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|299531912|ref|ZP_07045312.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni S44] gi|298720087|gb|EFI61044.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni S44] Length = 246 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 15/218 (6%) Query: 34 HVLRMKEGDNILLFNGK------DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 VLR + GD I LF G+ GE+ + I+++G+S + +V+ S ++ + V ++ Sbjct: 27 QVLRHQPGDVITLFEGQTGNGFTGGEFQATITHMGRSDVGVRVDSHSPAEREAERVVHLV 86 Query: 87 SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 + N R+D++++K+ E+G+ +I+PV+ + ++R ++ +SA EQC Sbjct: 87 VGMPANERMDWLVEKATELGVASIQPVMAARSVLKLKGDRADKKIERWQSIAVSACEQCG 146 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P I+ P L L++ D E + A V +L GPEGG Sbjct: 147 RNQVPVIHAPLPLADWLRSKDAPATDTTRLVLSLREGNQPLRTAAGDAQTVWVLHGPEGG 206 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++E++ + P SLG R+LR++TA+VAA++L+ Sbjct: 207 LTAQEEDWALEQGW-KPASLGSRVLRAETASVAALSLL 243 >gi|269101820|ref|ZP_06154517.1| ribosomal RNA small subunit methyltransferase E [Photobacterium damselae subsp. damselae CIP 102761] gi|268161718|gb|EEZ40214.1| ribosomal RNA small subunit methyltransferase E [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 44/253 (17%) Query: 15 PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 P + +QG S D +++ V+RM+ G I+LF+G + E+ + I+ K +VE Q Sbjct: 9 PESLPSQGSVMLSDDAANHVGRVMRMQAGQEIMLFDGSNAEFPAIITNASKK-NVEVEIQ 67 Query: 73 SRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 R + I SP+ + ++++ IQKSVE+G+ I P+I+ N Sbjct: 68 QRVECS------IESPLNIHLGQVVSRGEKMEFTIQKSVELGVNTITPLISERC-GVKLN 120 Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +R + I+A EQ +P I P LE +W C A+E G + Sbjct: 121 GERFDKKLAQWQKIAIAACEQSGRNVVPEIRPIMKLE----DW---C----AEEFSGLKL 169 Query: 177 SL--EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +L ++I +P +V +LIGPEGG S+E + + F L LGPR+LR++TAA Sbjct: 170 NLHPRAKYSINTLPTPVTDVRLLIGPEGGLSSDEIDMTENYNFDEIL-LGPRVLRTETAA 228 Query: 231 VAAMALVQAICGD 243 + A+ +Q GD Sbjct: 229 MTAITALQVRFGD 241 >gi|152976741|ref|YP_001376258.1| hypothetical protein Bcer98_3037 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025493|gb|ABS23263.1| protein of unknown function DUF558 [Bacillus cytotoxicus NVH 391-98] Length = 249 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ T + GD H++A V+RM GD+I NGK +++I+ +V Sbjct: 1 MQRYFVEEKNVNGTTIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAACTIAEITNEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ + V K ++L+ + QK E+G A P ++ Sbjct: 61 STI---VEWIETTSELPILVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173 + T ++R++ AAEQ +P +Y P + + LL K +D C + + +E Sbjct: 118 AKKTDKKVERLKKIVKEAAEQSHRTEIPHVYAPVSFKQLLEMSKEYD-VCLVAYEEEAKQ 176 Query: 174 SE--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E N + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKANFAKALTTIEPGQKLLIVFGPEGGLSEEEVSALREYKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|119503497|ref|ZP_01625580.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium HTCC2080] gi|119460559|gb|EAW41651.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium HTCC2080] Length = 243 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 34/231 (14%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSP 88 H+L VLR + GDNI LF G +W +S V K S+ V S T+ SP Sbjct: 26 HHLVKVLRARVGDNITLFTGTGLDWQCCVSEVHKRSVTLSVGGASNPNTE--------SP 77 Query: 89 IKT---------NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTI 132 +KT +R D+ IQK+ E G+ I P+ + + DR+ + Sbjct: 78 LKTHLGLCLSKGDRFDWAIQKATEAGVATITPLYSDRV-DVKLPADRIPKRIAHWQQIVR 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 SA EQC +P I+ PT L NW Q ++ + + + ++A+ Sbjct: 137 SACEQCGRAIVPQIFDPTP----LSNW---AQEQVSEAKLFLHHRESAMLPVTRPTSIAL 189 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 L+GPEGG ++ F+ + LGPR+LR++TA + A++++ A GD Sbjct: 190 LVGPEGGLSETDRGYASDAGFIG-VKLGPRVLRTETAPLVALSILGARWGD 239 >gi|254804259|ref|YP_003082480.1| hypothetical protein NMO_0244 [Neisseria meningitidis alpha14] gi|304388478|ref|ZP_07370582.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091] gi|254667801|emb|CBA03770.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|304337534|gb|EFM03699.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091] Length = 241 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|319941739|ref|ZP_08016061.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis 3_1_45B] gi|319804672|gb|EFW01539.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis 3_1_45B] Length = 249 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 23/249 (9%) Query: 9 RLFVDFPLCIKTQGKASGDQYH-------YLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 R F+D P T G ++ + LR+ G+ + LFNG W + + Sbjct: 5 RFFIDAP----TDAFQLGGRFELPPKTARHAGRSLRLAAGEIVELFNGTGAAWSGPVGFS 60 Query: 62 GKSIRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVIT 114 S ++E+++ R+ + + S + + D++++K+VE G M A R V Sbjct: 61 DASAWVELEHRTDRTAESPLAITLLQSLVAPEKADWIVEKAVEAGISEIIFMPAERSVTK 120 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + R+ SAAEQC +P + +LE K + + V A S Sbjct: 121 LAGERLEKRLARLTDIARSAAEQCGRNVVPLVRAVPSLEAGFKTVSGDVKFVLAPGADAS 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 S + + +VA +GPEGG+ + E E L + P LGPR+LR++TA +AA Sbjct: 181 AAS----SMLPGLLSVAFAVGPEGGFSAREIE-LAAAHGWRPQLLGPRVLRTETAGLAAA 235 Query: 235 ALVQAICGD 243 Q + GD Sbjct: 236 IWAQTLVGD 244 >gi|255659202|ref|ZP_05404611.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM 20544] gi|260848654|gb|EEX68661.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM 20544] Length = 248 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 22/234 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 G H+L HV+R K G +++ + ++ + + ++ ++ + + T +S +Q Sbjct: 18 GADAHHLMHVMRAKPGQEVIVVDDENQVARMEMTRFTSDAVTMELVERLDADT-ESPIQL 76 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAE 136 + +K +++D+++QK+VE+G+ I PV + RY + R + AA+ Sbjct: 77 GLAMCLLKADKMDFVVQKAVELGVNCIVPVASHNCVVRYDAKKAKQRQQRWQKIADEAAK 136 Query: 137 QCDILTLPFIYPPTTL-EFLLKNW---DHNCQIVFA---DETCGSENSLEKLHAIAHIPN 189 QC L ++P TL +FL W D + + +F +E + L++ + ++ Sbjct: 137 QCGRTVLVKVFPIETLKDFLSHAWYEDDMDSEFLFCYENEENVSVRDCLQRTTSERYM-- 194 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG+ EE E + ++LGPRILR++TAAVA +++VQ GD Sbjct: 195 --LLIGPEGGFTLEEAEAVVKAGG-QSVTLGPRILRAETAAVAGLSIVQYEKGD 245 >gi|50085384|ref|YP_046894.1| hypothetical protein ACIAD2284 [Acinetobacter sp. ADP1] gi|49531360|emb|CAG69072.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 243 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 24/244 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + T + +H+ VLR + D + FNG+ GE+ + + K Sbjct: 1 MNRFYIEADLSVNTDTLLTESVFHHWVRVLRAQVNDCAIFFNGQGGEYQVTLQEINK--- 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI------KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQN 119 K S Q D F I K +R+DY IQK+ E+G+ I+ + + R Sbjct: 58 -KNATVSIDQFNPVDRTPAFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMR 116 Query: 120 THYNMDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCG 173 Y+ D+ + + I+A EQC + +P I PP +L E++ N ++V A E Sbjct: 117 LKYDRDQKKIDHWQSIAIAACEQCGMNRVPEILPPVSLNEWINTATLPNTKLVLAPEK-E 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +N L+ + +A+LIGPEGG E ++ F+ +G R+LR++TA V A Sbjct: 176 QQNVLKNAQS-----ELALLIGPEGGLSENEIIAANNKGFIN-WCIGERVLRTETAPVVA 229 Query: 234 MALV 237 ++++ Sbjct: 230 LSIL 233 >gi|311278138|ref|YP_003940369.1| hypothetical protein Entcl_0810 [Enterobacter cloacae SCF1] gi|308747333|gb|ADO47085.1| protein of unknown function DUF558 [Enterobacter cloacae SCF1] Length = 243 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ P+ + Q S D +++ VLRM G I LF+G + + ++I + K S Sbjct: 2 RIPRIYHPEPVTVGQQMALSDDAANHVGRVLRMGIGQAIQLFDGSNQLFDAEIVHADKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 +R V + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VRVTV-LKGETDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 AERLNKKIQQWQKIAIAACEQCGRNRIPEIRPAMDLEQWCAEQDDALKLNLHPRASASIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLPQ-----PVERVRLLIGPEGGLSADEIAMTARYRF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|300869308|ref|ZP_07113899.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC 6506] gi|300332685|emb|CBN59097.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC 6506] Length = 284 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 123/274 (44%), Gaps = 40/274 (14%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L+RL + Q + Q HYL VLR++EGD L +G+ WL++++ + Sbjct: 2 AQLQRLAIAPSQLQDRQIILTAQQQHYLYRVLRLREGDRFLAMDGRGHCWLAELAAIDAV 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + E +S+ DV + + K N D +++++VE+G+ I PV++ T + + Sbjct: 62 AVIQEEVFIKSELN-VDVTLMAALPKGNGFDDVVRQAVELGVYCIIPVVSDRTLLKPSSQ 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-------TCGSE 175 ++R + AAEQ + +P + P + ++N D + + C + Sbjct: 121 KIERWQRIAAEAAEQSERQIVPVMLEPVSFAVGVENCDRKYKYICVARGDSRHLLDCLLD 180 Query: 176 NSLEKLHA-----------------------------IAHIPNVAILIGPEGGYHSEEKE 206 N +EK + I + P++ I GPEGG+ +E Sbjct: 181 NKIEKEESPITNHQSPIINSQLPITNYQLPITNHQSQITNYPSIVIATGPEGGWTEKEVT 240 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 T F P+SLG RILR+ TA + A++++ + Sbjct: 241 TAIQFSF-QPVSLGSRILRAVTAPIVALSIIAGV 273 >gi|298715395|emb|CBJ28006.1| conserved unknown protein [Ectocarpus siliculosus] Length = 301 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 92/292 (31%) Query: 36 LRMKEGDNILLFNGKDGEWLSKIS--------------------------------YVGK 63 +R+++G+ + +F+G +GE+L+ ++ K Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEK 60 Query: 64 SIRFKVEYQSRSQTKQS-------------DVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110 I +VE +R Q +++ +F+PI+ RL +++K+VE+G + Sbjct: 61 VIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLT 120 Query: 111 PVITRYTQNTHYN----MDRVRTYT-ISAAEQCDILTLPFIYPPTTLEFLLKNWD---HN 162 PV+T TQ + +DR+ T + AAEQC+ +T+P + P TL L++ + + Sbjct: 121 PVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSS 180 Query: 163 CQ---IVFADETCGSENSLEK---------------LHAIA-------------HI---- 187 C IV + SL L A+A H+ Sbjct: 181 CDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSD 240 Query: 188 ----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N A LIGPEGG+ +E TL PFV +SLG +LR++TAAV A++ Sbjct: 241 DNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALS 292 >gi|240013291|ref|ZP_04720204.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae DGI18] gi|240120363|ref|ZP_04733325.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 241 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|126175723|ref|YP_001051872.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS155] gi|152999348|ref|YP_001365029.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS185] gi|304411141|ref|ZP_07392756.1| protein of unknown function DUF558 [Shewanella baltica OS183] gi|307306436|ref|ZP_07586179.1| protein of unknown function DUF558 [Shewanella baltica BA175] gi|125998928|gb|ABN63003.1| protein of unknown function DUF558 [Shewanella baltica OS155] gi|151363966|gb|ABS06966.1| protein of unknown function DUF558 [Shewanella baltica OS185] gi|304350334|gb|EFM14737.1| protein of unknown function DUF558 [Shewanella baltica OS183] gi|306910727|gb|EFN41155.1| protein of unknown function DUF558 [Shewanella baltica BA175] Length = 243 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ PL I Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 5 RIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKHVTV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + +S + + + +R+++ IQKSVE+G+ I P+ + N +R Sbjct: 65 KLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +SA EQ +P + P L ++ N L+ Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|300853987|ref|YP_003778971.1| hypothetical protein CLJU_c08010 [Clostridium ljungdahlii DSM 13528] gi|300434102|gb|ADK13869.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 251 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 11/228 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-Y 84 G+ ++ VLR+K GD I + N E+L I + K + + +S ++ Y Sbjct: 20 GEDVKHIRKVLRLKCGDKININNCNGKEFLGAIEKIDKDEVVVNIIEELTLYNESKIKIY 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQC 138 +F + K+ ++D ++QK+VE+G+ I PV+T + +DR A +QC Sbjct: 80 LFQGLPKSGKMDLIVQKAVELGVYEITPVVTSRVVVKNDSGEFKKVDRWNKIAKEACKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAILIG 195 +P + P + + LL ++ IV + G + + + +++ +AI+IG Sbjct: 140 KRSIIPKVNVPISFKELLSEGEYMDVIVVPYENESNTGIKKIVNSIKDKSNLEKIAIVIG 199 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ +E + L ++ +LGPRILR++TA ++L+ GD Sbjct: 200 PEGGFEEQEIDELKNINSHIA-TLGPRILRTETAGFVCISLIMYELGD 246 >gi|239998111|ref|ZP_04718035.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae 35/02] gi|240112081|ref|ZP_04726571.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae MS11] gi|240124855|ref|ZP_04737741.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254492891|ref|ZP_05106062.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268593962|ref|ZP_06128129.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268598139|ref|ZP_06132306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268683436|ref|ZP_06150298.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226511931|gb|EEH61276.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268547351|gb|EEZ42769.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268582270|gb|EEZ46946.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268623720|gb|EEZ56120.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|317165554|gb|ADV09095.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae TCDC-NG08107] Length = 241 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|120597613|ref|YP_962187.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. W3-18-1] gi|146294248|ref|YP_001184672.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella putrefaciens CN-32] gi|120557706|gb|ABM23633.1| protein of unknown function DUF558 [Shewanella sp. W3-18-1] gi|145565938|gb|ABP76873.1| protein of unknown function DUF558 [Shewanella putrefaciens CN-32] Length = 243 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ PL I D ++ VLRM G+NI LFNG ++L++I GK Sbjct: 5 RIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKHVTV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + +S + + + +R+++ IQKSVE+G+ I P+ + N +R Sbjct: 65 KLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123 Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +SA EQ +P + P L ++ N L+ Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|170078905|ref|YP_001735543.1| hypothetical protein SYNPCC7002_A2310 [Synechococcus sp. PCC 7002] gi|169886574|gb|ACB00288.1| conserved hypothetical protein (DUF558) [Synechococcus sp. PCC 7002] Length = 236 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 22/224 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +Q HYL VLR++ GD +++ NG WL +++ + I+ +E Q QT+ + Sbjct: 22 EQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTET-EEIQL-IESQ-HLQTECPIPVKLV 78 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 + + N D +++ E+G+ I PVI+ T + + + R R AAEQ + +P Sbjct: 79 AALPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKRWRKIATEAAEQSERAIVP 138 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADET--CGS-ENSLEKLHAIAHI--PNVAILIGPEGG 199 I P LL+ + ++T CG+ E SL L A+ P + +LIGPEGG Sbjct: 139 KIETPQPFLQLLET-------LSPEQTYLCGAREKSLHLLDALPKTLPPEITVLIGPEGG 191 Query: 200 YHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + E + +P V SLG ILR+ TA++ A+ALV + C Sbjct: 192 WTETEIQQAIAKGMPVV---SLGNSILRAVTASITAIALVNSHC 232 >gi|167630502|ref|YP_001681001.1| hypothetical protein HM1_2440 [Heliobacterium modesticaldum Ice1] gi|167593242|gb|ABZ84990.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 254 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 17/234 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-YI 85 ++ +L+ VLR++ GD +L F+G+ E+ + ++ + F + ++++ ++ ++ Sbjct: 21 EESQHLSKVLRLRAGDAVLAFDGQGNEYEAIVAEINGDKAFLESLRPTGASREAPIRLWL 80 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 + K +++ +IQK+ E+G+ I PV+T + DR + AA+QC Sbjct: 81 LQGVAKGEKMELVIQKATELGVEKIFPVLTERSVVRFDAAKAKERRDRWQKIAREAAKQC 140 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEKLHAIAH---IPNV 190 +P + P ++ +WD ++ E + ++ K + H + Sbjct: 141 WRTVIPEVQLPAAWAEVITDWDMTMPLLIPWEKEQGKGLKQVLTVLKKEGLLHDSPAKVI 200 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + IGPEGG + E T +SLGPRILR++TA +AA+A + GDW Sbjct: 201 GLAIGPEGGLTAAEVALARDRGART-VSLGPRILRTETAGIAALAAIMYELGDW 253 >gi|62129237|gb|AAX66940.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716087|gb|EFZ07658.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 259 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ F S N+L + Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINTLP-----LPVER 204 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257 >gi|269837717|ref|YP_003319945.1| hypothetical protein Sthe_1689 [Sphaerobacter thermophilus DSM 20745] gi|269786980|gb|ACZ39123.1| protein of unknown function DUF558 [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 21/239 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R ++ PL + +Q A VLR+ G ++LFNG DG+ + R Sbjct: 7 RFYLPAPLPPGESVALTEEQARQAARVLRLAPGAPVVLFNG-DGQEVPGTIEDCAPRRVT 65 Query: 69 VEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V + V I + IK +R D+++QK E+G+ I P+ T T + Sbjct: 66 VRLGEPRAGRSCPVPAIHVAQALIKADRFDWVVQKVTELGVARITPLATSRTVVSLPVER 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R + + AAEQ +T+P I P TL+ LL +V C EN Sbjct: 126 ARQRRERWQRIAVEAAEQSGRVTIPEIDEPATLDDLLPLMARIPALV-----CW-ENEAM 179 Query: 180 KLHAIAHIPNVA---ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 LH + +P ++IGPEGG+ EE T +SLGP ILRS+TAA+AA+A Sbjct: 180 PLHRV-RLPTAGPLLVVIGPEGGFTREEIAAAVDAGART-VSLGPLILRSETAALAALA 236 >gi|162139548|ref|YP_218021.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 243 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 16 TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 76 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ F S N+L + Sbjct: 134 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINTLP-----LPVER 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 189 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|90412046|ref|ZP_01220053.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK] gi|90327024|gb|EAS43403.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK] Length = 225 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 42/241 (17%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ V+RM+ G +LLF+G + E+ + IS K +V+ Q R++ Sbjct: 3 SDDAANHVGRVMRMQVGQEVLLFDGSNAEFPAVISAASKK-NVEVDIQCRNENS------ 55 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------R 128 I SP+ + ++++ IQKSVE+G+ I P+I+ N +R + Sbjct: 56 IESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERC-GVKLNAERFEKKLSQWQ 114 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAH 186 I+A EQC +P I P LE +W C A+E G + +L ++I Sbjct: 115 KIVIAACEQCGRNVIPEIRPVMKLE----DW---C----AEEYDGLKLNLHPRANYSINT 163 Query: 187 IP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +P V +LIGPEGG +EE F L LGPR+LR++T A+ A+ +Q G Sbjct: 164 LPEPVSKVRLLIGPEGGLSAEEISMTEQYKFDEIL-LGPRVLRTETTAMTAITALQVRFG 222 Query: 243 D 243 D Sbjct: 223 D 223 >gi|307245046|ref|ZP_07527140.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854034|gb|EFM86245.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 37/239 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM EG+ I+LF+G + + + + VGK S ++S++ Sbjct: 21 SEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQIIAKIDGSELDNRESNLPI 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136 + + +R+++ IQKSVE+G+ I P+ + + + + + I+A E Sbjct: 81 HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189 QC +P I P L +W C ++ + KL + I +PN Sbjct: 141 QCGRNEIPEIRPIMK----LTDW------------CKEQDDMLKLNLHPRAKYTIRQLPN 184 Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIG EGG +EE E + F T + LG R+LR++TA++AA+ +Q GD Sbjct: 185 VPEAGVRLLIGSEGGLSAEEIEMTETQGF-TEVLLGKRVLRTETASLAAITALQVCFGD 242 >gi|237808014|ref|YP_002892454.1| hypothetical protein Tola_1251 [Tolumonas auensis DSM 9187] gi|237500275|gb|ACQ92868.1| protein of unknown function DUF558 [Tolumonas auensis DSM 9187] Length = 243 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ + PL + D +++ VLRM I LFNG+ G++ + I+ GK Sbjct: 2 RVPRIYQNSPLNVGASVSLDDDAANHVGRVLRMVPDQEICLFNGQGGQYQAVITESGKKH 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117 + K+ ++ + S + + +++++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKITDFSAHSVESPLSIHLGQVISRGDKMEFTIQKSVELGVNVITPLWSSRCGVKLQG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +++ + ISA EQC ++P I P +LE L ++ S + Sbjct: 122 DRLDKKLEQWQKIAISACEQCGRNSVPLIRPVMSLENWLAEPTDELKLTLHPRAQYSVGT 181 Query: 178 L-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L E H V ++IGPEGG +E F L LGPR+LR++TAA+ A+ Sbjct: 182 LPEPTHG------VRLVIGPEGGLSDDEIALTEQYNFQEML-LGPRVLRTETAALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQCRFGD 241 >gi|188588657|ref|YP_001920258.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum E3 str. Alaska E43] gi|188498938|gb|ACD52074.1| conserved surface protein [Clostridium botulinum E3 str. Alaska E43] Length = 254 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 16/239 (6%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 T+GK GD ++ VLR+ EG+ ++L N + E+L +I VGK + S + Sbjct: 14 TEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEVIVNILEELSTNNE 73 Query: 80 SDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS 133 S V +F + K ++D ++QK E+G+ P+IT + ++R+ + Sbjct: 74 SRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGEFKKLERLNRIALE 133 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLH----AIAH 186 AA+Q +P + L I+ E G ++ +++L + Sbjct: 134 AAKQSKRSIIPNVREVVEFNEALNELQRLDLILVPYENAENFGFKSLVKELSDKNVDLNS 193 Query: 187 IPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I N+ ++IGPEGG+ E ETL H ++ ++LG RILR++TA A +L+Q D Sbjct: 194 IENIGVVIGPEGGFEESEIETLKHKGAYI--ITLGNRILRTETAGFVATSLIQYELADL 250 >gi|226938941|ref|YP_002794012.1| hypothetical protein LHK_00007 [Laribacter hongkongensis HLHK9] gi|226713865|gb|ACO73003.1| Methyltrans_RNA domain containing protein [Laribacter hongkongensis HLHK9] Length = 240 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 18/220 (8%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 VLR++ D ++LF+GK GEW +++ +G+ S R VE + + + + + T Sbjct: 27 QVLRLRTDDPLILFDGKGGEWRARLVELGRRSARVHVEAFQAVERESPLLLSLAQGVSTG 86 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 +R+++ +QK VE+G+ +P++T + +R +A EQC +P Sbjct: 87 DRMEFTLQKGVELGIAVFQPLVTERAMLKLAGERAERKHERWNDIVRAACEQCGRNRIPE 146 Query: 146 IYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSE 203 I P TL FL + + + + E L A P A +L GPEGG S+ Sbjct: 147 IRPLMTLAAFLAQPRADAARFIL---SPAGERRLADYPA----PQAAWLLAGPEGGLSSQ 199 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E+ + + PL LGPR+LR++TAA+AA A +Q + GD Sbjct: 200 EEAAAMAAGW-EPLRLGPRVLRTETAALAAAAAMQTLWGD 238 >gi|221133775|ref|ZP_03560080.1| hypothetical protein GHTCC_02514 [Glaciecola sp. HTCC2999] Length = 244 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R+FV PL + + H+L +VLR+K+ ++LFNG E+ ++I+ V K Sbjct: 3 ITRVFVPEPLIVDAALTIDNESAHHLINVLRVKQDQPLVLFNGDGNEYSAQINEVHKRKV 62 Query: 64 --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 ++ K+ + S+ Q I K +R++ ++QK+ E+G+ I P+IT+ N Sbjct: 63 IVNVDAKLAIGAESKFPIHLGQGI---AKGDRMETVLQKATELGVTEITPIITQRC-NVK 118 Query: 122 YNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + +R I A EQ LP ++PP TL K +I F + Sbjct: 119 LSPERWAKKLVQWEKVIIGACEQSGRNVLPILHPPITLSEWCKQSTEQYRITFDPH---A 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L+ L H + ILIGPEGG+ E F T + +GPR+LR++TAA+A++ Sbjct: 176 QQHLQALPVTQH--GIRILIGPEGGFSEAETYGAEQTGFNT-VKIGPRVLRTETAAIASI 232 Query: 235 ALVQAICGD 243 A++QA GD Sbjct: 233 AIIQATYGD 241 >gi|261855041|ref|YP_003262324.1| hypothetical protein Hneap_0420 [Halothiobacillus neapolitanus c2] gi|261835510|gb|ACX95277.1| protein of unknown function DUF558 [Halothiobacillus neapolitanus c2] Length = 244 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+++D L ++ +YL +VLR+++G + +F+G++ E + +S +GK Sbjct: 2 RIPRIYLDAALAEGATLPLPAERLNYLKNVLRLRDGQALRVFDGQNHEADATLS-LGKRE 60 Query: 66 RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + +S +Q I + K ++D++IQK+VE+G+ PV T + Sbjct: 61 GSLAIGRVAAHSVESPLQTHLIQAMGKGEKMDWVIQKAVELGVTRFTPVSTERSVVELKG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R I A EQ LP + P +LE L D + V + S Sbjct: 121 ERADKRHARFIDIAIGACEQSGRNFLPRVDPILSLEEALTQTDAALKWVLHP----NPGS 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A+A +VA+LIGPEGG E E + F+ PL+LG R+LR++TA + A++++ Sbjct: 177 GAALPAVAP-DSVALLIGPEGGLSDHEVEAAIASGFM-PLTLGSRVLRTETAPIVALSVL 234 Query: 238 QAICGDWY 245 Q GD++ Sbjct: 235 QMQWGDFF 242 >gi|238787363|ref|ZP_04631162.1| Ribosomal RNA small subunit methyltransferase E [Yersinia frederiksenii ATCC 33641] gi|238724625|gb|EEQ16266.1| Ribosomal RNA small subunit methyltransferase E [Yersinia frederiksenii ATCC 33641] Length = 243 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELTLSDEAANHVGRVLRMGEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 62 LTVRLAEGQPEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC T+P I L D + ++ S Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNTVPEIREAMQLSDWCAEQDDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L A + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|296124207|ref|YP_003631985.1| hypothetical protein Plim_3975 [Planctomyces limnophilus DSM 3776] gi|296016547|gb|ADG69786.1| protein of unknown function DUF558 [Planctomyces limnophilus DSM 3776] Length = 251 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDV 82 G + H+ HVLR+K G I+LF+G +++ G+ +R Q S Sbjct: 22 GSEAHHALHVLRVKTGQQIVLFDGHGNSATAEVIRPGRKDVGLRIVSGIQHSSPPALQLT 81 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDI 140 + +P K +RLD+M++K E+G+ P+IT+ + ++R+R ISA +Q Sbjct: 82 LLVATP-KGDRLDWMVEKLTELGVSRFVPLITQRSVVDPRESKLERLRQTVISACKQSHR 140 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-----GSENSLEKLHAIAHIP----NVA 191 L I P L L DH Q + + S +S A + +P ++A Sbjct: 141 DWLMEIEEPARLTDWLNRKDHPTQWFGSLQAPLVARKASNDSQPIASANSRMPLENTSLA 200 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ILIGPEGG+ SEE+ L + P+ LG +LR++TAA+A +L Sbjct: 201 ILIGPEGGWTSEEESQLMT-SGARPVRLGQFVLRTETAAIALTSLA 245 >gi|187935444|ref|YP_001885097.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B str. Eklund 17B] gi|187723597|gb|ACD24818.1| conserved surface protein [Clostridium botulinum B str. Eklund 17B] Length = 254 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 ++GK GD ++ VLR+ EG+ ++L N + E+L +I VGK + S + Sbjct: 14 SEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEVIVNILEELSTNNE 73 Query: 80 SDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS 133 S V +F + K ++D ++QK E+G+ P+IT + ++R+ + Sbjct: 74 SRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGEFKKLERLNRIALE 133 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGSENSLEKLH----AIA 185 AA+Q +P + + L N ++ E G ++ +++L + Sbjct: 134 AAKQSKRSIIPNVREVVEFDEAL-NELQGLDLILVPYENAENFGFKSLVKELSDKNVDLN 192 Query: 186 HIPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I N+ I+IGPEGG+ E ETL H ++ ++LG RILR++TA A +L+Q Sbjct: 193 SIENIGIVIGPEGGFEESEIETLKHKGAYI--ITLGNRILRTETAGFVATSLIQ 244 >gi|294338581|emb|CAZ86910.1| putative Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) rsmE [Thiomonas sp. 3As] Length = 236 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 29/215 (13%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS---PIKT 91 VLR+KEG+ + +F+G GEW ++ K++ + + + +++DV+ + + P Sbjct: 31 VLRLKEGEPVAVFDGTGGEWSGEV-IDPKTLLLRTHH---AVEREADVRVMLAVGMP-AN 85 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 R+D +++K+VE+G+ AI+P+ITR + + + + I+A EQC +P Sbjct: 86 ERMDALVEKAVELGVAAIQPLITRRSVLRLQGERAQRRVAHWQGVAIAACEQCGRNRVPE 145 Query: 146 IYPPTTLEFLLKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 + P TL L++ H C + S + L A + ++ GPEGG Sbjct: 146 VAPVATLSDWLQHLGNDNARLHRCVL--------SPLATRALEPFAAGESGWMVSGPEGG 197 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +E L F +SLGPR+LR+DTA +AA+ Sbjct: 198 LGEDEIALLQRSGFQA-VSLGPRVLRADTAPLAAL 231 >gi|95928478|ref|ZP_01311225.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] gi|95135268|gb|EAT16920.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 11/247 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 S ++R F + D H+++ VLR++ D I+L +G+ G +I + Sbjct: 7 RSLMRRFFTPQITFTHSSADLPRDVAHHISTVLRLRTDDRIVLCDGRGGCAECRIDEISP 66 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 K R Q V I +++LD ++QK+ E+G+ +RPV + Q Sbjct: 67 KRCRVTRLRHWLEQETALPVTLIQGLPHSDKLDLILQKTTELGVQQVRPVRCQRCQYPIA 126 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AA Q + LP + + E L++ D + ++V ++ ++ Sbjct: 127 PAKAARKLERWQKIVTEAARQSERSWLPEVAALCSFEEALQHCDADVKLVLWEQ---ADQ 183 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+++ VA+++GPEGG EE FV + LGPRILR++TA +A MA+ Sbjct: 184 PLQRVLPEISPDRVAVVVGPEGGLAQEEVALAVEHGFVA-VGLGPRILRTETAGMALMAI 242 Query: 237 VQAICGD 243 +Q GD Sbjct: 243 LQYQYGD 249 >gi|264680843|ref|YP_003280753.1| hypothetical protein CtCNB1_4711 [Comamonas testosteroni CNB-2] gi|262211359|gb|ACY35457.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 246 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 15/218 (6%) Query: 34 HVLRMKEGDNILLFNGK------DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 VLR + GD I LF G+ GE+ + I+++G+S + +V+ S ++ + + ++ Sbjct: 27 QVLRHQPGDVITLFEGQTGNGFTGGEFQATITHMGRSDVGVRVDSHSPAEREAARAVHLV 86 Query: 87 SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 + N R+D++++K+ E+G+ +I+PV+ + ++R ++ +SA EQC Sbjct: 87 VGMPANERMDWLVEKATELGVASIQPVMAARSVLKLKGDRADKKIERWQSIAVSACEQCG 146 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P I+ P L L++ D E + A V +L GPEGG Sbjct: 147 RNQVPVIHAPLPLADWLRSKDAPATDATRLVLSLREGNQPLRTAAGDAQAVWVLHGPEGG 206 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++E E L P SLG R+LR++TA+VAA++L+ Sbjct: 207 LTAQE-EDLALEQGWKPASLGSRVLRAETASVAALSLL 243 >gi|24372421|ref|NP_716463.1| hypothetical protein SO_0832 [Shewanella oneidensis MR-1] gi|24346395|gb|AAN53908.1|AE015528_1 conserved hypothetical protein TIGR00046 [Shewanella oneidensis MR-1] Length = 243 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 16/244 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67 R++ PL + Q D ++ VLRM G+ I LFNG ++L++ I KS+ Sbjct: 5 RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKKSVTV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 KV + +S + + + +R+++ IQKSVE+G+ I P+ + + Sbjct: 65 KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLSGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + ISA EQ +P + P L+ ++ N L+ Sbjct: 124 LDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGINGLD 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ +Q Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETHQF-TDVLLGPRVLRTETASLTAITALQL 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|238798622|ref|ZP_04642097.1| Ribosomal RNA small subunit methyltransferase E [Yersinia mollaretii ATCC 43969] gi|238717508|gb|EEQ09349.1| Ribosomal RNA small subunit methyltransferase E [Yersinia mollaretii ATCC 43969] Length = 243 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG N+ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMSEGQNLQLFDGSNQVFTAEIIRVDKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 62 LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC T+P I L D + ++ S Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLSDWCAEQDDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + V +LIGPEGG +E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----PSLNKVRLLIGPEGGLSVDEIAMTSHLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|58697158|ref|ZP_00372581.1| surface protein [Wolbachia endosymbiont of Drosophila simulans] gi|58536534|gb|EAL59900.1| surface protein [Wolbachia endosymbiont of Drosophila simulans] Length = 182 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 3/180 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 69 VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q + + Y++ +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ +++P I PP L + N V DET ++ L+ +A I Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVLKGKKNVAII 182 >gi|283835293|ref|ZP_06355034.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220] gi|291068451|gb|EFE06560.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220] Length = 243 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL +Q D +++ VLRM G + LF+G + + ++I++ K S Sbjct: 2 RIPRIYHPEPLTSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61 Query: 65 IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----- 116 + KV E R + + S + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VDVKVLNVELDDRESPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119 Query: 117 -TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++ + + + + I+A EQC +P I P LE D ++ S Sbjct: 120 DSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + + +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 180 NTLP-----LPVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|207721568|ref|YP_002252007.1| hypothetical protein RSMK01827 [Ralstonia solanacearum MolK2] gi|206586729|emb|CAQ17314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 249 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 126/255 (49%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R ++D PL T ++ HVLR+ GD++ LF+G E+ +++ + + R Sbjct: 3 LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINR--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116 + + ++ +Y+ + + +++D++I+K+VE+G+ AI P V+ Sbjct: 60 DATASLADATQPDTEARYVITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLS 119 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + +A EQC +P + P TTL L + + GS++ Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQS 179 Query: 177 -------SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S E++ + + +LIGPEGG S ++E+L PL+LG RILR+++A Sbjct: 180 LTQWAAQSRERIDST----GIELLIGPEGGL-SPDEESLAEAAGYLPLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + A+ G++ Sbjct: 235 ALVAVSALHAVLGEF 249 >gi|261823140|ref|YP_003261246.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium wasabiae WPP163] gi|261607153|gb|ACX89639.1| protein of unknown function DUF558 [Pectobacterium wasabiae WPP163] Length = 244 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S D +++ VLRM G ++ LF+G + + ++I GK S+R V + + K+S + Sbjct: 22 SDDAANHVGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKKSVRVSV-TAGKLEDKESPLH 80 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 + + ++++ IQKS+E+G+ I P+++ + + + + ++A Sbjct: 81 LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKISQWQKIAVAAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ +P + P TLE D+ ++ S N+L + V +LIG Sbjct: 141 EQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSINTLP-----LPVDRVRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG + E T+ S T + LGPR+LR++T A+ AM +Q GD Sbjct: 196 PEGGLTATEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242 >gi|254515811|ref|ZP_05127871.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR5-3] gi|219675533|gb|EED31899.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR5-3] Length = 245 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 19/225 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 ++A LRM+ D + LFNG E I+ + K R V S+ + D I Sbjct: 26 RHIAKALRMRVEDTLCLFNGNGVEARGLITAIDKD-RVSVSLHDLSEPPRESPLDTVLII 84 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-------YTISAAEQCD 139 + + +R+D ++QK+ E+G+ I P+I+ T + +R+ ISA EQC Sbjct: 85 ALSRGDRMDTVVQKATELGVSEIWPMISERT-GVRLDGERLSKKQEHWGRVAISACEQCG 143 Query: 140 ILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 LP I P + E L + + + G+ L + ++ +L+GPEG Sbjct: 144 RNRLPLIAAPVSYAETLSRAAQQDASLRLVLHPLGNAEPLPE-----QCRSLIMLVGPEG 198 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G +E F T LGPRILR++TA +A +A+ QA GD Sbjct: 199 GLSDQEVAGACDAGF-TAFQLGPRILRTETAPLAGLAVAQARWGD 242 >gi|163942067|ref|YP_001646951.1| hypothetical protein BcerKBAB4_4162 [Bacillus weihenstephanensis KBAB4] gi|229135136|ref|ZP_04263937.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196] gi|163864264|gb|ABY45323.1| protein of unknown function DUF558 [Bacillus weihenstephanensis KBAB4] gi|228648313|gb|EEL04347.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196] Length = 249 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK E +++I+ +V Sbjct: 1 MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P++ + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus nasoniae] Length = 245 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 18/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S + ++++ VLRM G NI LF+G + ++ +I K S++ ++ + + ++S + Sbjct: 23 SDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEANKKSVKIQLGLATIA-NRESPLD 81 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISA 134 + + ++++ IQKSVE+G+ I P+++ N + R+ ++ ISA Sbjct: 82 LHLGQVISRGEKMEFTIQKSVELGVNIITPLLSERC-NVKLDPRRLSKKQQQWQSIAISA 140 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P +E D +I + S N+L +A + + +LI Sbjct: 141 CEQCGRNKIPLIRPVMPIEAWCMEKDDALKINLHPKAQSSINTL-----LASVNKIRLLI 195 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG +E + F T + LGPRILR++T A+ A+ +Q GD Sbjct: 196 GPEGGLSPDEIIMTTNYQF-TNILLGPRILRTETTALTAITALQVRFGD 243 >gi|67924875|ref|ZP_00518269.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501] gi|67853274|gb|EAM48639.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501] Length = 241 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 21/235 (8%) Query: 21 QGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 QGK + +Q HYL +VLR+KE ++ +G + +L K++ I +++ Q+ Sbjct: 13 QGKIINLTPEQKHYLKNVLRLKEDSEFIVIDGHNQTYLVKLNQDKGEIIKELKEQTELPI 72 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAA 135 V + + K D +I+ E+G+ I P+IT+ T + + + ++R R A Sbjct: 73 ---TVTLMIALPKNKGFDEVIRSCTELGVNTIIPIITKRTLLKPSSHKIERWRKIVKEAT 129 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKL--HAIAHIPN- 189 EQ + +P I P + L N D+ NC I C + + L + + I N Sbjct: 130 EQSERQIVPIIMEPMSFSEALNNMDNTNKNCYI------CVARKKAKHLLTYLLPEITNS 183 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V I G EGG+ EE + L F+ P++LG R+LR+ TA + A++LV A+ + Sbjct: 184 VIIATGCEGGWTEEEIDQAEDLGFI-PVNLGSRVLRAVTAPLVALSLVGAVAEKY 237 >gi|85858413|ref|YP_460615.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB] gi|85721504|gb|ABC76447.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB] Length = 274 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 19/236 (8%) Query: 17 CIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73 C+ T G S + HY+ V RMK G + LF+G+ E+ + I + R E Sbjct: 23 CVLTVGDRCFLSEEHLHYVRSVQRMKPGSRLSLFDGRGQEYTAVIVDISAE-RALAEIID 81 Query: 74 RSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMD 125 R + + + I + K ++D+++QK+ E+G+ I P + + + + Sbjct: 82 RKSAPERPARITLIQALPKGQKMDFIVQKATELGVDEILPFSSERSIPRLPPEKARLKTE 141 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETC--GSENSLEKLH 182 R R AA QC +P I + +LK D + +++F +E G ++ L+K Sbjct: 142 RWRKIAGEAARQCRRSDVPNIPEIQSFAGILKAADADSLKMIFWEEESRQGLKDLLKKFS 201 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +IL+GPEGG SEE E + FV+ +SLG +IL+ +TAAVA +A++Q Sbjct: 202 GTCIF---SILVGPEGGLTSEEVEAATAAGFVS-VSLGKQILKLETAAVAILAIIQ 253 >gi|320355424|ref|YP_004196763.1| hypothetical protein Despr_3346 [Desulfobulbus propionicus DSM 2032] gi|320123926|gb|ADW19472.1| protein of unknown function DUF558 [Desulfobulbus propionicus DSM 2032] Length = 260 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 12/224 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 SG + ++A VLR+K G + LF+G+ + + VGK R++ V Sbjct: 19 SGAEARHIASVLRLKPGQAVELFDGQGQVCAAVLQTVGKHQVTARVTAIRNERPAVSVPL 78 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN---THYNMDRVRTYTISAAEQCD 139 + +K ++D ++QK+ E+G A PV++ Y +N + +R + I A +QC Sbjct: 79 TLAQCLLKGKKMDLLVQKATELGAQAFMPVVSAYCENHGDRDHQRERWQRIMIEACKQCH 138 Query: 140 ILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 I P L+ +DH + A E G + I H + + +GPEG Sbjct: 139 RSNPMAILPVARLDQADFTPYDHR---LAAWE--GERQAALPTRFIDHPGPLCLFLGPEG 193 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 G H ++ L F TP SLG ILR +TAA+AA+++VQ + G Sbjct: 194 GLHDDDLRLLTQWSF-TPFSLGRHILRGETAALAALSIVQYLSG 236 >gi|116747664|ref|YP_844351.1| hypothetical protein Sfum_0215 [Syntrophobacter fumaroxidans MPOB] gi|116696728|gb|ABK15916.1| protein of unknown function DUF558 [Syntrophobacter fumaroxidans MPOB] Length = 254 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 14/249 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 KR FV+ + + D H++ HVLR++ G+ + L +G G WL I G ++R Sbjct: 4 KRFFVERAVPGEGTIDLGVDAAHHIEHVLRLRAGEEVELIDGVGGGWLGAIVEAGTGTVR 63 Query: 67 FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMG---AIRPVITRYTQNTHY 122 ++ + + S ++ + + +R+D +++++ E+G+ A R ++Y Sbjct: 64 VRITGRLGPPAESSLNLSLALAFSRADRMDLVLRQATEIGVNRFIAFRSRRSQYALTGRA 123 Query: 123 NMDRVRTYTISAAE---QCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGS 174 R+ + A E QC L +P + + + LL + N + A E Sbjct: 124 AGKRLERWQRIAREAVCQCGRLNVPEMVILSDVRELLAKIEQRERSGNLLRILAFERGNG 183 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + ++ A V + +GPEGG+ SEE E L F + LGPRILR +TAA + Sbjct: 184 KGIVDLHRAFPQCTEVMVAVGPEGGWSSEEAELLTRNGF-HAVHLGPRILRLETAAAIVL 242 Query: 235 ALVQAICGD 243 + VQ + GD Sbjct: 243 SSVQLLWGD 251 >gi|304396754|ref|ZP_07378634.1| protein of unknown function DUF558 [Pantoea sp. aB] gi|304355550|gb|EFM19917.1| protein of unknown function DUF558 [Pantoea sp. aB] Length = 243 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ PL I ++ D +++ VLRM G + LF+G + + ++I++V K R Sbjct: 3 IPRIYHAEPLDIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKK-R 61 Query: 67 FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 KV +S+ +S + + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 62 VKVSVTESQPDDHESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I TLE D ++ S Sbjct: 119 LDAERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|325135519|gb|EGC58137.1| hypothetical protein TIGR00046 [Neisseria meningitidis M0579] Length = 241 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 25/225 (11%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYV-----GKSIRFKVEYQSRSQTKQSDVQYIFSP 88 +VLR++ +NI LFNGK ++++ + G I + + S + +Q I S Sbjct: 27 NVLRVRPNENITLFNGKGKAHAARLTVLEKRRAGAEILHEETADAESPLNITLIQSISS- 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T Sbjct: 86 --GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNT 143 Query: 143 LPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGG 199 +P + P E L K + +++ S N KL I P+ AI ++GPEGG Sbjct: 144 VPPVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGG 196 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 197 WTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|254521669|ref|ZP_05133724.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gi|219719260|gb|EED37785.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 245 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 22/230 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 + ++L V+R++EGD +LFNG ++ + ++ GK ++ +++ R + + Sbjct: 23 ETANHLVRVMRLREGDACVLFNGDGHDYSATLTVAGKREVQVRIDAVERVDNESPLAITL 82 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---------YTISAA 135 I + ++D ++QK+ E+G+ AI PV + T +D R SA Sbjct: 83 LQGIARGEKMDLILQKATELGVAAIIPV---NAERTEVKLDAARAEKRVAHWNNVVTSAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAIL 193 Q +P + P +L + + D +L + P + I Sbjct: 140 GQSGRARIPQVGSPLSLAQAAATLPADTLRLTLDP-----QGAHRLSTLDGAPTGGIVIA 194 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ +++ L + F L LGPRILR++TA +AA+A +QA GD Sbjct: 195 IGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAALQARLGD 243 >gi|50122843|ref|YP_052010.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium atrosepticum SCRI1043] gi|49613369|emb|CAG76820.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 18/233 (7%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79 + + S D +++ VLRM G ++ LF+G + + ++I GK S+R + + K+ Sbjct: 18 EAELSDDAANHIGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKKSVRVSF-TAGKLEDKE 76 Query: 80 SDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTY 130 S + + + ++++ IQKS+E+G+ I P+++ + DR+ + Sbjct: 77 SPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERC-GVKLDADRMEKKISQWQKI 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 ++A EQ +P + P TLE D+ ++ S N+L I V Sbjct: 136 AVAACEQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSINTLP-----LPIDRV 190 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG + E T+ S T + LGPR+LR++T A+ AM +Q GD Sbjct: 191 RLLIGPEGGLTATEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242 >gi|194100123|ref|YP_002003263.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae NCCP11945] gi|240122667|ref|ZP_04735623.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID332] gi|268681265|ref|ZP_06148127.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|193935413|gb|ACF31237.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|268621549|gb|EEZ53949.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 241 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRIRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRACKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|307132693|ref|YP_003884709.1| hypothetical protein Dda3937_00423 [Dickeya dadantii 3937] gi|313104178|sp|P37995|RSME_DICD3 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|306530222|gb|ADN00153.1| predicted protein [Dickeya dadantii 3937] Length = 244 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQ 83 S D +++ VLRM G + LF+G + + ++I GK +V Y + +++ ++S + Sbjct: 22 SEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKK-NVRVRYAAGQTENRESPLH 80 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 + + ++++ IQKS+E+G+ I P+++ + + + + I+A Sbjct: 81 LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDGERLEKKIAQWQKIAIAAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P TLE D+ ++ S N+L + + +LIG Sbjct: 141 EQCGRNRVPEIRPVQTLESWCAEPDNGLKLNLHPRAAHSINTLP-----LPVSRIRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG ++E + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 196 PEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242 >gi|251788143|ref|YP_003002864.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya zeae Ech1591] gi|247536764|gb|ACT05385.1| protein of unknown function DUF558 [Dickeya zeae Ech1591] Length = 244 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQ 83 S D +++ VLRM G + LF+G + + ++I GK +V Y + +++ ++S + Sbjct: 22 SEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIIQAGKK-SVRVRYAAGQTENRESPLH 80 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 + + ++++ IQKS+E+G+ I P+++ + + + + I+A Sbjct: 81 LHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGIKLDGERLEKKISQWQKIAIAAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P TLE D+ ++ S N+L + + +LIG Sbjct: 141 EQCGRNRVPEIRPVQTLESWCAESDNGLKLNLHPRATQSINTLP-----LPVSRIRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG ++E + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 196 PEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242 >gi|241759555|ref|ZP_04757658.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114] gi|241320112|gb|EER56473.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114] Length = 241 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R +VDF L + + + +L +VLR+K + I+LFNG + + + K Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRCA 59 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S+R E + +++ ++ + + R+D+ +QKSVE+G+ IRPVI+ Sbjct: 60 SVRILREEATDNESP-LNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R + +SA EQ +P + P T L+ + S N Sbjct: 119 ERAEKRVARWQEIVVSACEQSGRNIVPKVLPLMTYAQALQQLPQETAKLLM-----SLNR 173 Query: 178 LEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +KL + V ++GPEGG+ +E++ F + ++LG R+LR++TA++AA+A Sbjct: 174 AQKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAAIAT 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|212709359|ref|ZP_03317487.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM 30120] gi|212688271|gb|EEB47799.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM 30120] Length = 243 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ PL I T D +++ VLRM G + LF+G + + ++I+ K F Sbjct: 5 RIYHPEPLQINTTISLCDDAANHVGRVLRMTAGQQLELFDGSNHIFNAEITEATKKNVFV 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 S ++S + + + ++++ IQKSVE+G+ I P+++ + Sbjct: 65 RVLNSTLDDRESPLDIHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDGERL 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + + I+A EQ +P I P +LE D +I S N+L Sbjct: 125 EKKLQQWQKIAIAACEQSGRNRIPVIRPVQSLEAWCAENDGAFKINLHPRASESINTLP- 183 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A + +V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ +Q Sbjct: 184 ----ADLKHVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITALQVR 238 Query: 241 CGD 243 GD Sbjct: 239 LGD 241 >gi|240117029|ref|ZP_04731091.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID1] gi|268602715|ref|ZP_06136882.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268586846|gb|EEZ51522.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 241 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRACKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|83814115|ref|YP_446222.1| hypothetical protein SRU_2116 [Salinibacter ruber DSM 13855] gi|294508153|ref|YP_003572211.1| hypothetical protein SRM_02338 [Salinibacter ruber M8] gi|83755509|gb|ABC43622.1| conserved hypothetical protein TIGR00046 [Salinibacter ruber DSM 13855] gi|294344481|emb|CBH25259.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 239 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 13/215 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ +L VLR + GD++ + +G G + ++I +VG R + D+ Sbjct: 22 EEARHLRTVLRGEAGDDMTVVDGDGGWYRARIDHVGPDQVVGTITDERDNVGEPDMDVTV 81 Query: 87 SP---IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 + K +R + ++K+VE+G + P+ TR T+ +R+R ++A +QC L Sbjct: 82 ALGILKKRSRFETFVEKAVELGARRVVPLRTRRTERDAIREERLRNVMVAAMKQCRRSRL 141 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVA---ILIGPEGG 199 P + P ++E LL ++V C E S+ A A A +L+GPEGG Sbjct: 142 PALAAPQSIEPLLAGDVGETRLV-----CHAGEESVPIQQAAADTRQRASALVLVGPEGG 196 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + E E TP+SLG R LR++TA +AA+ Sbjct: 197 FAPPEVEAAVEA-EATPVSLGARRLRAETAGIAAL 230 >gi|194366854|ref|YP_002029464.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas maltophilia R551-3] gi|194349658|gb|ACF52781.1| protein of unknown function DUF558 [Stenotrophomonas maltophilia R551-3] Length = 245 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 18/228 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 + ++L V+R++EGD +LFNG ++ + ++ GK ++ +++ T+ + Sbjct: 23 ETANHLVRVMRLREGDTCVLFNGDGHDYSATLTVAGKREVQVRIDAVQAIDTESPLAITL 82 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---------YTISAA 135 I + ++D ++QK+ E+G+ AI PV + T +D R SA Sbjct: 83 LQGIARGEKMDLILQKATELGVAAIVPV---NAERTEVKLDAARAEKRVAHWNNVVTSAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + PP +L + + D + L L A A + I IG Sbjct: 140 GQSGRARIPQVGPPLSLAQAAAALPVDTLRLTLDPQ--GAHRLSTLDA-APGGGIVIAIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ +++ L + F L LGPRILR++TA +AA+A +QA GD Sbjct: 197 PEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAALQARLGD 243 >gi|317493538|ref|ZP_07951959.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918481|gb|EFV39819.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 243 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 18/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE---YQSRSQTKQS 80 S + +++ VLRM EG I LF+G + +++ I K ++R KV+ + R Sbjct: 21 SEEAANHVGRVLRMSEGHEIQLFDGSNQVFVAHIVAASKKNVRVKVQSGVLEDRESPLHL 80 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134 + + S + ++++ IQKS+E+G I P+I+ + + + + I+A Sbjct: 81 HLGQVIS--RGEKMEFTIQKSIELGASIITPLISERCGVKLDAERMAKKLGQWQKIAIAA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P LE D + ++ S N+L + V +LI Sbjct: 139 CEQCGRNVIPEIRPTMLLEQWCAEQDDSLKLNLHPRANASINTLP-----LPVERVRLLI 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 194 GPEGGLSADEIAMTAGYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|325127441|gb|EGC50371.1| hypothetical protein TIGR00046 [Neisseria meningitidis N1568] Length = 241 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLADIRQ-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|15677755|ref|NP_274919.1| hypothetical protein NMB1925 [Neisseria meningitidis MC58] gi|7227182|gb|AAF42254.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254670885|emb|CBA07409.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|316985547|gb|EFV64494.1| RNA methyltransferase family protein [Neisseria meningitidis H44/76] gi|325133384|gb|EGC56048.1| hypothetical protein TIGR00046 [Neisseria meningitidis M13399] gi|325139579|gb|EGC62119.1| hypothetical protein TIGR00046 [Neisseria meningitidis CU385] gi|325143638|gb|EGC65957.1| hypothetical protein TIGR00046 [Neisseria meningitidis M01-240013] gi|325200977|gb|ADY96432.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis H44/76] gi|325206833|gb|ADZ02286.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis M04-240196] Length = 241 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|17228844|ref|NP_485392.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc sp. PCC 7120] gi|17130696|dbj|BAB73306.1| alr1349 [Nostoc sp. PCC 7120] Length = 235 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S L+R+ + + Q + Q HYL VLR++EGD ++ +G WL+ ++ + Sbjct: 2 SQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTE--EQ 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + E +++ + I P K + D +++ E+G+ I PV++ T + Sbjct: 60 AQVLEELAVKTELPVAITLMIALP-KGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQ 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEK 180 ++R R AAEQ + +P I P T + N H E +N L Sbjct: 119 KLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRYICEARGEYVHLKNVLTD 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + V + IGPEGG+ E E +L F P+SLG RILR+ TA + A++L+ A Sbjct: 179 ISG-----GVVVAIGPEGGWTDRELEEATTLRF-QPVSLGGRILRAVTAPLVALSLISAA 232 Query: 241 C 241 C Sbjct: 233 C 233 >gi|225574856|ref|ZP_03783466.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM 10507] gi|225037930|gb|EEG48176.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM 10507] Length = 246 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 10/240 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 +KR F + + +G+ +++ VLRM+EG+ + + +G+ E+ +I + I Sbjct: 1 MKRFFAKPEQIDEREIHITGEDVNHIRQVLRMREGEELWVSDGEKKEYHCRIKDFQQDEI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 ++ Y S + Y+F + K ++++ +IQK+VE+G + PV T + Sbjct: 61 LLEILYAQESDYELPSRIYLFQGLPKGDKMELIIQKAVELGAFEVIPVATSRCVVKLDKK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177 +R + +AA+Q L +P I+P +L E L + + +++ + G + Sbjct: 121 KAAKKQERWQEIARNAAKQSRRLLVPQIHPVCSLREALDYSGSLDVKLLPYELAKGMRQT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L I ++ I IGPEGG+ EE E ++ V P++LG RILR++TA + ++++ Sbjct: 181 KETLAGIKRGQSIGIFIGPEGGFAPEEVEQAMAVG-VEPITLGKRILRTETAGMTVLSIL 239 >gi|322514739|ref|ZP_08067765.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976] gi|322119334|gb|EFX91450.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976] Length = 248 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 39/240 (16%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM EGD I+LF+G + + + + VGK S ++S++ Sbjct: 26 SEDATNHVGRVLRMTEGDQIILFDGSNHIFHATLQAVGKKQIIAKIDSSELDNRESNLPI 85 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + +R+++ IQKSVE+G+ I P+ + + + + + I+A E Sbjct: 86 HLGQVISRGDRMEFTIQKSVELGVKTITPLCSERCGVKLNDERQDKKLQQWQKIAIAACE 145 Query: 137 QCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIP 188 QC +P I P F+ L +W C ++ + KL + I +P Sbjct: 146 QCGRNEIPEIRP-----FMKLTDW------------CKEQDDMLKLNLHPRAKYTIRQLP 188 Query: 189 NVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 NV +LIG EGG +EE + F T + LG R+LR++TA++ A+ +Q GD Sbjct: 189 NVPEAGVRLLIGSEGGLSAEEIAMTETEGF-TEVLLGKRVLRTETASLTAITALQVCFGD 247 >gi|291295971|ref|YP_003507369.1| hypothetical protein Mrub_1587 [Meiothermus ruber DSM 1279] gi|290470930|gb|ADD28349.1| protein of unknown function DUF558 [Meiothermus ruber DSM 1279] Length = 232 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 19/240 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R FV+ I+ Q + G + H+L VLR +EGD + +F+GK E +++ +R Sbjct: 5 RAFVE---SIQPQVELVGREAHHLLDVLRAREGDWLTVFDGKGLEGRARVLQTEPGWVRL 61 Query: 68 KVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY---TQNTHY 122 +VE + + + Q Y+ + +K + L + + + E+G I P++T++ + + Sbjct: 62 QVEETWPASKEPPQPITLYV-ALLKGDHLAEVARAATELGASQIVPILTQHCVVRELSEA 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 R+ + AA+QC+ +P + P L+ + + F + +L H Sbjct: 121 KRQRLERIVLEAAKQCERAVVPKVQPVLQLKLI-----PPVEQGFVAQP--RTQALLHEH 173 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 P A+L GPEGG E + L + F TP++LGPRILR++TA VA ++LV A G Sbjct: 174 FDPSKPT-ALLTGPEGGLGEAEVQFLQARGF-TPVTLGPRILRAETAPVALLSLVTAAFG 231 >gi|58177000|pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus gi|58177001|pdb|1V6Z|B Chain B, Crystal Structure Of Tt1573 From Thermus Thermophilus gi|85544471|pdb|2CX8|A Chain A, Crystal Structure Of Methyltransferase With Ligand(Sah) gi|85544472|pdb|2CX8|B Chain B, Crystal Structure Of Methyltransferase With Ligand(Sah) gi|160286352|pdb|2Z0Y|A Chain A, Crystal Structure Of Ttha0657-Sam Complex gi|160286353|pdb|2Z0Y|B Chain B, Crystal Structure Of Ttha0657-Sam Complex Length = 228 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 24/210 (11%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86 + +L VLR + GD +F+G+ E L+++ +G +R++V + R ++ V+ + Sbjct: 19 ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRV-LEERRPEREVGVEVVLY 76 Query: 87 -SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142 + +K ++L +++ + E+G I+P++TR++ + + R+R + AA+Q + Sbjct: 77 VALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEXGEGKLRRLRAVALEAAKQSGRVV 136 Query: 143 LPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + PP L+ + + H E E L A+ +GPEG Sbjct: 137 VPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPL------------ALAVGPEG 184 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 G+ EE L + F TP+SLG RILR++T Sbjct: 185 GFAEEEVALLEARGF-TPVSLGRRILRAET 213 >gi|79362513|ref|NP_175422.2| methyltransferase [Arabidopsis thaliana] gi|49660069|gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gi|55740521|gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gi|332194384|gb|AEE32505.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] Length = 296 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 16/222 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78 + G ++ ++A VLR+K+ D + LFNGK G I + K+ + F + + Q Sbjct: 70 RVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGM 129 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 Q V F +K R D++I+K E+G ++ P++T + N +DR+ + +AA+Q Sbjct: 130 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 189 Query: 138 CDILTLPFIYPP----TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 C L + PP T L+ +LK+ C + A+ ++ L +++ A + ++ Sbjct: 190 CQRLHQMVLNPPIKFGTLLDHILKS--KLCLVATAE----AKPLLNAVNSSAKESSGLLI 243 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +GPEG + +E E + T + LGP LR +TA +A +A Sbjct: 244 VGPEGDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLA 284 >gi|266621760|ref|ZP_06114695.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM 13479] gi|288866557|gb|EFC98855.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM 13479] Length = 245 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 118/224 (52%), Gaps = 14/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ +L+ NG D +++ ++ + ++ ++ + T+ Sbjct: 19 TGPDVNHIKNVLRMKPGEEVLISNGVDKDYVCRLQTITSDAVTAEIVTVTEGGTELPAKF 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K+++++++IQK+VE+G+ + PV TR T + + R + SAA+ Sbjct: 79 YLFQGLPKSDKMEFLIQKAVELGVYQVIPVETRRTVVKLDAKKVEAKVRRWNAVSESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 Q L +P + T + L +D N I+ + G ++ I + I Sbjct: 139 QSKRLIIPEVTGVMTFQEALNYAGGFDKN--IIPFEHAEGMADTKAYFAGIRPGMSCGIF 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IGPEGG+ EE + S V P++LG RILR++TA +A ++++ Sbjct: 197 IGPEGGFEDEEI-SQASEAGVKPVTLGKRILRTETAGLAVLSVL 239 >gi|296134635|ref|YP_003641877.1| protein of unknown function DUF558 [Thiomonas intermedia K12] gi|295794757|gb|ADG29547.1| protein of unknown function DUF558 [Thiomonas intermedia K12] Length = 236 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 19/210 (9%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS---PIKT 91 VLR+KEG+ + +F+G GEW ++ +++ + + + +++DV+ + + P Sbjct: 31 VLRLKEGEPVAVFDGTGGEWSGEV-IDPQTLLLRAHH---AVEREADVRVMLAVGMP-AN 85 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 R+D +++K+VE+G+ AI+P+ITR + + + + I+A EQC +P Sbjct: 86 ERMDALVEKAVELGVAAIQPLITRRSVLRLQGERAQRRVAHWQGVAIAACEQCGRNRVPE 145 Query: 146 IYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + P TL L++ + N Q+ S + L A + ++ GPEGG +E Sbjct: 146 VAPVATLSDWLQHLGNDNAQL---HRCVLSPLATNPLRPFASGESGWMVSGPEGGLGEDE 202 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L F +SLGPR+LR+DTA +AA+ Sbjct: 203 IALLQRSGFQA-VSLGPRVLRADTAPLAAL 231 >gi|237729877|ref|ZP_04560358.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908483|gb|EEH94401.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 243 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ P+ +Q D +++ VLRM G + LF+G + + ++I++ K S Sbjct: 2 RIPRIYHPEPITSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61 Query: 65 IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----- 116 + KV E R + + S + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VDVKVLNAELDDRESPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119 Query: 117 -TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++ + + + + I+A EQC +P I P LE D ++ S Sbjct: 120 DSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + + +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 180 NTLP-----LPVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|291618768|ref|YP_003521510.1| YggJ [Pantoea ananatis LMG 20103] gi|291153798|gb|ADD78382.1| YggJ [Pantoea ananatis LMG 20103] Length = 243 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ P+ + ++ D ++ VLRM G ++ LF+G + + ++I++V K R Sbjct: 3 IPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKK-R 61 Query: 67 FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 KV S+ ++S + + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 62 VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R ++A EQC +P I P LE + ++ S Sbjct: 119 LDAERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSTDEIAMTAQHGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|327395101|dbj|BAK12523.1| hypothetical UPF0088 protein YggJ [Pantoea ananatis AJ13355] Length = 243 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ P+ + ++ D ++ VLRM G ++ LF+G + + ++I++V K R Sbjct: 3 IPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKK-R 61 Query: 67 FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 KV S+ ++S + + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 62 VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R ++A EQC +P I P LE + ++ S Sbjct: 119 LDAERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|242237998|ref|YP_002986179.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya dadantii Ech703] gi|242130055|gb|ACS84357.1| protein of unknown function DUF558 [Dickeya dadantii Ech703] Length = 244 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM G + LF+G + + ++I GK R + +S + Sbjct: 22 SEDAANHVGRVLRMTAGQALQLFDGSNQVFDAEILQTGKKSVCVRYAAGRVEDCESPLHL 81 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAA 135 + + ++++ IQKS+E+G+ I P+ + + DR+ + ISA Sbjct: 82 HLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERC-GVKLDGDRLDKKIAQWQNIAISAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P TLE D+ ++ S N+L I + +LIG Sbjct: 141 EQCGRNRIPEIRPAMTLESWCAESDNGLKLNLHPRATQSINTLS-----LPISRIRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG S E + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 196 PEGGLSSGEIAMTAAQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242 >gi|229019535|ref|ZP_04176352.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273] gi|229025777|ref|ZP_04182176.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272] gi|228735485|gb|EEL86081.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272] gi|228741791|gb|EEL91974.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273] Length = 249 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T+ + GD H++ V+RM GD+I NGK E +++I+ +V Sbjct: 1 MQRYFVEEKHVSETKIRIVGDDVHHIGRVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGS 174 + ++R++ AAEQ +P ++ P + + LL N C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHAPASFKQLLAMSNEYDVCLVAYEEEAKQG 177 Query: 175 ENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E S + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 178 EKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|114777358|ref|ZP_01452355.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1] gi|114552140|gb|EAU54642.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1] Length = 240 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 20/243 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW---LSKISYVGKSI 65 RL ++ PL T + HYL V+R GD ++LFNG GE+ + +S S Sbjct: 4 RLHLNQPLEAGTTVDLPANLAHYLHTVMRHAVGDTVILFNGHGGEYHAVIDSLSRKAASC 63 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 R +++ + V + ++ +++ ++QK E+G ITR +++ Sbjct: 64 RITA-FENIDREMACRVHIVQGACRSEKIETVLQKGTELGAAGFH--ITRSERSSLKLDG 120 Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +DR R AAEQC +P ++ T L + H + T S Sbjct: 121 SKLDARLDRWRKIVTEAAEQCGRTIVPTVHWHTRLSDIPC---HGLGLTLHPHTAASWQQ 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + I + + +GPEGG+ + TL F + ++ GPRILR++TAA A +A + Sbjct: 178 IRT--EIRESSEITLAVGPEGGWSDADIATLGERGFRS-IAFGPRILRTETAAPALLAAI 234 Query: 238 QAI 240 QA+ Sbjct: 235 QAV 237 >gi|55980626|ref|YP_143923.1| 16S ribosomal RNA methyltransferase RsmE [Thermus thermophilus HB8] gi|55772039|dbj|BAD70480.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 228 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 24/210 (11%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86 + +L VLR + GD +F+G+ E L+++ +G +R++V + R ++ V+ + Sbjct: 19 ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRV-LEERRPEREVGVEVVLY 76 Query: 87 -SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142 + +K ++L +++ + E+G I+P++TR++ + + R+R + AA+Q + Sbjct: 77 VALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVV 136 Query: 143 LPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + PP L+ + + H E E L A+ +GPEG Sbjct: 137 VPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPL------------ALAVGPEG 184 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 G+ EE L + F TP+SLG RILR++T Sbjct: 185 GFAEEEVALLEARGF-TPVSLGRRILRAET 213 >gi|325131649|gb|EGC54355.1| hypothetical protein TIGR00046 [Neisseria meningitidis M6190] gi|325137512|gb|EGC60095.1| hypothetical protein TIGR00046 [Neisseria meningitidis ES14902] gi|325141520|gb|EGC63990.1| hypothetical protein TIGR00046 [Neisseria meningitidis 961-5945] gi|325199017|gb|ADY94473.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis G2136] Length = 241 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLADIRQ-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|297852690|ref|XP_002894226.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340068|gb|EFH70485.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 295 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 12/220 (5%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78 + G ++ ++A VLR+K+ D + LFNGK G I + K+ + F + + Q Sbjct: 69 RVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGI 128 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 Q V F +K R D++++K E+G ++ P++T + N +DR+ + +AA+Q Sbjct: 129 QWQVFAAFGTLKGGRADWLVEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAAAKQ 188 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 C L + PP + LL + + C + A+ T L +++ + +++G Sbjct: 189 CQRLHQMVLNPPIKFDTLLGHISKSKLCLVATAEAT----PLLNAVNSSTKETSGILIVG 244 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 PEG + +E E + T + LGP LR +TA +A +A Sbjct: 245 PEGDFTKKEVEMMLE-AGSTAVGLGPHRLRVETATIALLA 283 >gi|325201437|gb|ADY96891.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis M01-240149] gi|325207417|gb|ADZ02869.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis NZ-05/33] Length = 241 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|226311620|ref|YP_002771514.1| hypothetical protein BBR47_20330 [Brevibacillus brevis NBRC 100599] gi|226094568|dbj|BAH43010.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 252 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 31/248 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + + GD H++ +V+R +EG+ I++ +G G+S R Sbjct: 1 MQRYFVEPHSFTENELTIVGDDVHHIVNVMRAREGEEIIVSDG-----------AGRSAR 49 Query: 67 FKVEYQSRSQTKQSDVQYIFS----PI---------KTNRLDYMIQKSVEMGMGAIRPVI 113 K+ Y S + + ++ + PI K +L++++QK E+G + P Sbjct: 50 AKLVYLSAKEVRAEVMEMLQEERELPIRVTIGQGLPKGEKLEWILQKGTELGAYSFFPFS 109 Query: 114 TRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 + T + ++R R AAEQ LP + P + +L+ Sbjct: 110 SERTIVKLDAKKEAKKLERWRKIVKEAAEQSHRAVLPELLSPVSFREILEAGQSYTHCAI 169 Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 A E GS + L + ++ +L+GPEGG+ EE S F+T +SLGPRILR++ Sbjct: 170 AYEKEGSTTIHQVLEEMTASDSLLVLVGPEGGFSPEEVAQAESKGFLT-VSLGPRILRTE 228 Query: 228 TAAVAAMA 235 TA+ +A Sbjct: 229 TASQYVLA 236 >gi|161869288|ref|YP_001598455.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis 053442] gi|161594841|gb|ABX72501.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 241 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|269137637|ref|YP_003294337.1| hypothetical protein ETAE_0279 [Edwardsiella tarda EIB202] gi|267983297|gb|ACY83126.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557702|gb|ADM40366.1| Ribosomal RNA small subunit methyltransferase E [Edwardsiella tarda FL6-60] Length = 243 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 18/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64 + R++ PL I + D +++ VLRM G + LF+G + + ++I S KS Sbjct: 2 RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIISADKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 +R ++ + + ++S + + + ++++ IQKS+E+G+ I P+I+ Sbjct: 62 VRVRLNHVQEAD-RESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERC-GVRL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R+ + I+A EQC +P I P LE D ++ S Sbjct: 120 DAERMAKKQQQWQKIAIAACEQCGRNRIPQIRPAMDLEAWCAEEDDCLRLNLHPRASASI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + + V +LIGPEGG + E F T + LGPR+LR++T A+ A+ Sbjct: 180 NTLPQ-----PLTRVRLLIGPEGGLSAAEIAMTADYRF-TDILLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|229013531|ref|ZP_04170665.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048] gi|228747768|gb|EEL97637.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048] Length = 249 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK E +++I+ +V Sbjct: 1 MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173 + ++R++ AAEQ +P ++ P++ + LL +D C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKSLATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|126663640|ref|ZP_01734636.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38] gi|126624223|gb|EAZ94915.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38] Length = 234 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 14/213 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-- 84 ++ ++ VLR KEGD I + NG + S+I + K E + +T Q V + Sbjct: 21 EESKHIVKVLRKKEGDTIFITNGLGFLFESEIILASEK---KCEVKIAKETFQEPVAFYT 77 Query: 85 --IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K N RL++ ++K+ E+G+ I P+I +++ Y +DR +A +Q Sbjct: 78 HIAVAPTKMNDRLEWFLEKATEIGIDEITPIICDHSERKVYKIDRAEKIIQAAMKQSLHY 137 Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP I PT+L +F+ N++ I +ET + S + + I H + ILIGPEG + Sbjct: 138 YLPKINEPTSLSQFVKLNFEGQKFIAHCEET--DKKSFK--NEIKHNEKITILIGPEGDF 193 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++E + F+ P++LG LR++TAA+ A Sbjct: 194 STKEINLAIANQFI-PVTLGNTRLRTETAALVA 225 >gi|91794324|ref|YP_563975.1| hypothetical protein Sden_2974 [Shewanella denitrificans OS217] gi|91716326|gb|ABE56252.1| protein of unknown function DUF558 [Shewanella denitrificans OS217] Length = 244 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 22/229 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 D ++ VLRM EG+ ++LFNG ++L+ I+ K+I + ++++ ++ Sbjct: 24 DGAAHIGRVLRMSEGEQVMLFNGDGKDYLADITSASKKNITITIISMEDNRSESGLNLHL 83 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 I + +R+++ IQKSVE+G+ I P+ + + +++ + ISA EQ Sbjct: 84 GQVISRGDRMEFTIQKSVELGVNTITPLFSERCGVKLTGERLEKKINQWQKIVISACEQS 143 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAILI 194 +P I P + + ++ H I + P V +LI Sbjct: 144 GRSQVPLIRPAMDVAAWCQEPSQALKLNLHPRAS---------HGIKGLTLENPRVRLLI 194 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG SEE F T + LGPR+LR++TA++ A+ +Q GD Sbjct: 195 GPEGGLSSEEILMTEQCDF-TDVLLGPRVLRTETASLTAITALQLTFGD 242 >gi|190575526|ref|YP_001973371.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas maltophilia K279a] gi|190013448|emb|CAQ47083.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 245 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 18/228 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE-YQSRSQTKQSDVQY 84 + ++L V+R++EGD +LFNG ++ + ++ GK ++ +++ Q+ + Sbjct: 23 ETANHLVRVMRLREGDTCVLFNGDGHDYSATLTAAGKREVQVRIDAVQAVDNESPLAITL 82 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---------YTISAA 135 + + ++D ++QK+ E+G+ AI PV + T +D R SA Sbjct: 83 LQGIARGEKMDLILQKATELGVSAIVPV---NAERTEVKLDVARAEKRVAHWNNVVTSAC 139 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + P +L + + D + L L A A + I IG Sbjct: 140 GQSGRARIPQVGSPVSLAQAATTLPADTLRLTLDPH--GAHRLSTLDA-APTGGIVIAIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ +++ L + F L LGPRILR++TA +AA+A +QA GD Sbjct: 197 PEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAALQARLGD 243 >gi|308390021|gb|ADO32341.1| hypothetical protein NMBB_2198 [Neisseria meningitidis alpha710] gi|325129462|gb|EGC52292.1| hypothetical protein TIGR00046 [Neisseria meningitidis OX99.30304] Length = 241 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240 >gi|293390908|ref|ZP_06635242.1| 16S rRNA methyltransferase RsmE [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951442|gb|EFE01561.1| 16S rRNA methyltransferase RsmE [Aggregatibacter actinomycetemcomitans D7S-1] Length = 244 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 23/248 (9%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 R++ PL T S D +++ VLRM+ GD + LF+G + + + I+ V KS+ Sbjct: 5 RIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVTKKSVEV 64 Query: 68 KV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + ++ +R + + S + R+++ IQKSVE+G+ I P+ +++ + Sbjct: 65 DILNRQFDNRESHLTIHLGQVIS--RGERMEFTIQKSVELGVNVITPL---WSERCGVKL 119 Query: 125 DRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 D R I+A EQC +P I P L+ D ++ S Sbjct: 120 DGERMEKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAERDEALKLNLHPRASYSI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L ++ A V +LIG EGG +E FV L LG R+LR++TAA+AA+ Sbjct: 180 RTLPEIPA----AGVRLLIGSEGGLSPQEIAQTEQQGFVEVL-LGKRVLRTETAAIAAIT 234 Query: 236 LVQAICGD 243 ++Q GD Sbjct: 235 VLQVCFGD 242 >gi|229062009|ref|ZP_04199335.1| RNA methyltransferase, RsmE [Bacillus cereus AH603] gi|229169059|ref|ZP_04296775.1| RNA methyltransferase, RsmE [Bacillus cereus AH621] gi|228614468|gb|EEK71577.1| RNA methyltransferase, RsmE [Bacillus cereus AH621] gi|228717318|gb|EEL68991.1| RNA methyltransferase, RsmE [Bacillus cereus AH603] Length = 249 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK E +++I+ +V Sbjct: 1 MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173 + ++R++ AAEQ +P ++ P++ + LL +D C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|153003145|ref|YP_001377470.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. Fw109-5] gi|152026718|gb|ABS24486.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5] Length = 246 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 15/224 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT-KQSDVQYI 85 + HYL VLR+ G + +F+G+ G W +++ +++ + R+Q +++ + Sbjct: 23 EARHYLRDVLRLGPGAEVEVFDGRGGAWAARVDAAYEALLLG---ERRAQGGAAAEIWLV 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139 + K ++D ++QK+ E+G + P V+ R R AA QC Sbjct: 80 AALAKGEKMDLVVQKATELGAAGVAPFAAERSVVRLEPDKGEERARRWRRIAEEAARQCG 139 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P + P L +L + +LE + A A+ A ++GPEGG Sbjct: 140 RADVPEVRAPAPLAGVLAALPPGALAIALQPGGPPVLALEPVAARAY----AAIVGPEGG 195 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E + +LGPR+LR++TAA+ A+AL+QA GD Sbjct: 196 LTDVELAACDAAGARR-AALGPRVLRAETAAIVAVALLQARFGD 238 >gi|194472615|ref|ZP_03078599.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248239|ref|YP_002148008.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245476|ref|YP_002217069.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205358823|ref|ZP_02659413.2| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359716|ref|ZP_02831876.2| protein YggJ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|207858355|ref|YP_002245006.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194458979|gb|EDX47818.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211942|gb|ACH49339.1| protein YggJ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939992|gb|ACH77325.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205331705|gb|EDZ18469.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343320|gb|EDZ30084.1| protein YggJ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206710158|emb|CAR34514.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087526|emb|CBY97291.1| Ribosomal RNA small subunit methyltransferase E 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|326624841|gb|EGE31186.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 259 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257 >gi|238918250|ref|YP_002931764.1| hypothetical protein NT01EI_0287 [Edwardsiella ictaluri 93-146] gi|238867818|gb|ACR67529.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 22/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64 + R++ PL I + D +++ VLRM G + LF+G + + ++I S K+ Sbjct: 2 RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIVSADKKN 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 +R +++ R + +S + + + ++++ IQKS+E+G+ I P+I+ Sbjct: 62 VRVRLDG-VREEDSESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERC-GVRL 119 Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R+ + I+A EQC +P I P TLE D ++ S Sbjct: 120 DAERMAKKQQQWQKIAIAACEQCGRNRIPQIRPIMTLEAWCAEPDDGLRLNLHPRASASI 179 Query: 176 NSLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 N+L +P + +LIGPEGG ++E + F T + LGPR+LR++T A+ A Sbjct: 180 NTLP-------LPQHRIRLLIGPEGGLSADEIAMTANHRF-TDILLGPRVLRTETTALTA 231 Query: 234 MALVQAICGD 243 + +Q GD Sbjct: 232 ITALQVRFGD 241 >gi|227326188|ref|ZP_03830212.1| hypothetical protein PcarcW_02253 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 244 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 16/232 (6%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79 + + S D +++ VLRM G ++ LF+G + + ++I GK S+R + + + K+ Sbjct: 18 EAELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKKSVRVRF-TAGKLEDKE 76 Query: 80 SDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYT 131 S + + + ++++ IQKS+E+G+ I P+++ + + + + Sbjct: 77 SPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKISQWQKIA 136 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 ++A EQ +P + P TLE D ++ S N+L + V Sbjct: 137 VAACEQSGRNCVPLVRPAMTLEAWCAEQDDALKLNLHPRATQSINTLP-----LPVARVR 191 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG + E T+ S T + LGPR+LR++T A+ AM +Q GD Sbjct: 192 LLIGPEGGLTAGEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242 >gi|158320271|ref|YP_001512778.1| hypothetical protein Clos_1236 [Alkaliphilus oremlandii OhILAs] gi|158140470|gb|ABW18782.1| protein of unknown function DUF558 [Alkaliphilus oremlandii OhILAs] Length = 256 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 122/233 (52%), Gaps = 19/233 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYI 85 + +++ VLR+KE D + + +G+ E++ I+ + K+ + +E + R T+++ V+ + Sbjct: 23 EDVKHISKVLRLKEKDIVEICDGESKEYICSIASIHKNEVVLSIE-EERKSTQEASVEVV 81 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAAE 136 K ++D +IQK+ E+G+ I PV+ T ++ ++R + AA+ Sbjct: 82 LYQGVPKGAKMDLIIQKTTELGIKEIIPVMMERTVVQFDSPKDEVKKVERWQKIAEEAAK 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKL--HAIAHIPNVA 191 Q +P I+ P + + +++ N + +E G +N ++ L A I + Sbjct: 142 QSKRGMIPKIHLPMSFKDAIEDSRKNALNIMPYENEENRGFKNIIKNLSKEDQASIKKIG 201 Query: 192 ILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + IGPEGG+ EE E + ++ + P++LGPRILR++TA ++LV GD Sbjct: 202 VWIGPEGGF--EESEVVKAIENGIHPVTLGPRILRTETAGFTMLSLVMYELGD 252 >gi|194442934|ref|YP_002042353.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194737195|ref|YP_002116042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195873572|ref|ZP_02697636.2| protein YggJ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197300804|ref|ZP_02661220.2| protein YggJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204928270|ref|ZP_03219470.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357183|ref|ZP_02345767.2| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205359187|ref|ZP_02667829.2| protein YggJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360780|ref|ZP_02686433.2| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224584887|ref|YP_002638686.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909892|ref|ZP_04653729.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161365422|gb|ABX69190.1| hypothetical protein SPAB_03859 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401597|gb|ACF61819.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408317|gb|ACF68536.1| protein YggJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712697|gb|ACF91918.1| protein YggJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633273|gb|EDX51687.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197290907|gb|EDY30261.1| protein YggJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322592|gb|EDZ07789.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323264|gb|EDZ11103.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338220|gb|EDZ24984.1| protein YggJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347043|gb|EDZ33674.1| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469415|gb|ACN47245.1| hypothetical protein SPC_3159 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322613491|gb|EFY10432.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621083|gb|EFY17941.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624147|gb|EFY20981.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628114|gb|EFY24903.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633233|gb|EFY29975.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636189|gb|EFY32897.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639527|gb|EFY36215.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647540|gb|EFY44029.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648724|gb|EFY45171.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653779|gb|EFY50105.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657885|gb|EFY54153.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663988|gb|EFY60187.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669001|gb|EFY65152.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673005|gb|EFY69112.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678004|gb|EFY74067.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681180|gb|EFY77213.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687890|gb|EFY83857.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194914|gb|EFZ80101.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196665|gb|EFZ81813.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202635|gb|EFZ87675.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207878|gb|EFZ92824.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212570|gb|EFZ97387.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214947|gb|EFZ99695.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222677|gb|EGA07042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225420|gb|EGA09652.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230565|gb|EGA14683.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235084|gb|EGA19170.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239123|gb|EGA23173.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244519|gb|EGA28525.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247134|gb|EGA31100.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253383|gb|EGA37212.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256310|gb|EGA40046.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262514|gb|EGA46070.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267390|gb|EGA50874.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269206|gb|EGA52661.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 259 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257 >gi|213023350|ref|ZP_03337797.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163039|ref|ZP_03348749.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424112|ref|ZP_03357005.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580648|ref|ZP_03362474.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612784|ref|ZP_03370610.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648200|ref|ZP_03378253.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850166|ref|ZP_03381064.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828647|ref|ZP_06546457.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 259 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINTLP-----LPVER 204 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257 >gi|83746774|ref|ZP_00943822.1| surface protein [Ralstonia solanacearum UW551] gi|207744320|ref|YP_002260712.1| hypothetical protein RSIPO_02511 [Ralstonia solanacearum IPO1609] gi|83726543|gb|EAP73673.1| surface protein [Ralstonia solanacearum UW551] gi|206595725|emb|CAQ62652.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 125/255 (49%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R ++D PL T ++ HVLR+ GD++ LF+G E+ +++ + + R Sbjct: 3 LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINR--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116 + + ++ +Y + + +++D++I+K+VE+G+ AI P V+ Sbjct: 60 DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAITPLQTERGVVRLS 119 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + +A EQC +P + P TTL L + + GS++ Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQS 179 Query: 177 -------SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S E++ + + +LIGPEGG S ++E+L PL+LG RILR+++A Sbjct: 180 LTQWAAQSRERIDST----GIELLIGPEGGL-SPDEESLAEAAGYLPLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + A+ G++ Sbjct: 235 ALVAVSALHAVLGEF 249 >gi|16761869|ref|NP_457486.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143356|ref|NP_806698.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|291084775|ref|ZP_06542159.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25345391|pir||AF0877 conserved hypothetical protein STY3247 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504171|emb|CAD02918.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138990|gb|AAO70558.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 243 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 16 TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 76 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 134 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINTLP-----LPVER 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 189 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|317049423|ref|YP_004117071.1| hypothetical protein Pat9b_3219 [Pantoea sp. At-9b] gi|316951040|gb|ADU70515.1| protein of unknown function DUF558 [Pantoea sp. At-9b] Length = 243 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 22/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F PL + ++ D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIFHPEPLAVNSEVFLDEDAANHVGRVLRMSAGQRLELFDGSNLTFAAEITQADKK- 60 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 R KV S+ ++S + + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 61 RVKVRVLDSQQDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P I TLE ++ Sbjct: 118 KLDAERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEAADGLKLNLHPRASH 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S N+L + + + +LIGPEGG +EE F T + LGPR+LR++T A+ A Sbjct: 178 SINTLPQ-----PVERIRLLIGPEGGLSTEEIAMTAQHGF-TDILLGPRVLRTETTALTA 231 Query: 234 MALVQAICGD 243 + +Q GD Sbjct: 232 ITALQVRFGD 241 >gi|46198606|ref|YP_004273.1| hypothetical protein TTC0298 [Thermus thermophilus HB27] gi|46196229|gb|AAS80646.1| hypothetical conserved protein [Thermus thermophilus HB27] Length = 228 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 24/210 (11%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86 + +L VLR + GD +F+G+ E L+++ +G +R++V + R ++ V+ + Sbjct: 19 ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRV-LEERRPEREVGVEVVLY 76 Query: 87 -SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142 + +K ++L +++ + E+G I+P++TR++ + + R+R + AA+Q + Sbjct: 77 VALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVR 136 Query: 143 LPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + PP L+ + + H E E L A+ +GPEG Sbjct: 137 VPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPL------------ALAVGPEG 184 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 G+ EE L + F TP+SLG RILR++T Sbjct: 185 GFAEEEVALLEARGF-TPVSLGRRILRAET 213 >gi|319796621|ref|YP_004158261.1| hypothetical protein Varpa_5998 [Variovorax paradoxus EPS] gi|315599084|gb|ADU40150.1| protein of unknown function DUF558 [Variovorax paradoxus EPS] Length = 246 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 17/216 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 VLRM+ GD + LF+G GE+ + I +G+S + V + + + ++ + N Sbjct: 27 QVLRMQPGDALTLFDGAGGEYEATIERMGRSDVSVTVGVHHPVEREATRAVHLAVGMPAN 86 Query: 93 -RLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTY----TISAAEQCDILTLPF 145 R+D++++K+ E+G+ +I+P+ T + + + ++ R + I+A EQC +P Sbjct: 87 ERMDWLVEKATELGVASIQPLATAHGVLRLSGERAEKKRAHWEAIAIAACEQCGRNRVPV 146 Query: 146 IYPPTTLE----FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEG 198 I+P + ++ D F +E A AH P +V +L GPEG Sbjct: 147 IHPVRSFSGNSGWIDAQQDEGATARFVLSLAEGTQGIEAASA-AHAPDNRDVRVLSGPEG 205 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 G + E++ + F P++LG R+LR++TAA+ A+ Sbjct: 206 GLSAAEEQEAIARGF-APVTLGLRVLRAETAALVAL 240 >gi|114331048|ref|YP_747270.1| hypothetical protein Neut_1049 [Nitrosomonas eutropha C91] gi|114308062|gb|ABI59305.1| protein of unknown function DUF558 [Nitrosomonas eutropha C91] Length = 253 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 15/234 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 + D H+ VLR+K+GD ++LF+G GE+ + V KS K+E + + + Sbjct: 21 NNDTSHHAVQVLRLKQGDPVILFDGTGGEFSGCLVQVRKSACVVKIEQHLPVERESPLML 80 Query: 84 YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + TN ++D++IQK+VE G+ I+P+IT T + + ISA E Sbjct: 81 TLAQAVCTNEKMDWIIQKAVEQGVIYIQPLITNRTLIRLTGERADKRWQHWQKIIISACE 140 Query: 137 QCDILTLPFIYPPTTL------EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 QC +P + P +L + L K + N + + L +L + Sbjct: 141 QCGRNRIPQLLPLMSLSHWLEQKLLQKQENSNLSGRDIILSPVARLRLAELSPPESGECI 200 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +L GPEGG+ EE + + F+ P+ LG RILR++TAA+AA+A Q + GD+ Sbjct: 201 TLLTGPEGGFTEEETDAMLHAGFI-PICLGTRILRTETAALAAIAAAQVLWGDY 253 >gi|163816746|ref|ZP_02208109.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759] gi|158448003|gb|EDP24998.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 11/241 (4%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R FVD I T + +G +++ +VLR+K G+ IL+ +G+ ++ +IS + Sbjct: 1 MNRFFVDIDGRDIGTDIEITGGDVNHIKNVLRLKIGEEILVSDGRGRDYTCRISRIDPDK 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +E S + + +F K++++D ++QK VE+G+ I PV T T Sbjct: 61 VVCNIEDISDNFAELPVKVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVFTSRTIVKLDQ 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + +R RT SAA+Q +P I P + L + I+ +E G E Sbjct: 121 KKATKKTERYRTIAESAAKQSGRGIVPEITEPVSFAKALDMASELDMNIIPYEEAEGIEE 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S + + + ++ I IGPEGG+ EE E + ++LG RILR++TA +A MA+ Sbjct: 181 SRQIIANVRGKRSLGIFIGPEGGFAREEVEEAVAAG-AECITLGHRILRTETAGLAVMAI 239 Query: 237 V 237 + Sbjct: 240 I 240 >gi|56415032|ref|YP_152107.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363961|ref|YP_002143598.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|229307087|ref|YP_001590023.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|229597264|ref|YP_002047082.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|56129289|gb|AAV78795.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095438|emb|CAR60997.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 16 TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 76 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 134 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 189 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|307260690|ref|ZP_07542380.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869611|gb|EFN01398.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 37/239 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM EG+ I+LF+G + + + + VGK S ++S++ Sbjct: 21 SEDATNHVGRVLRMTEGEQIILFDGSNHIFHTTLQAVGKKQIIAKIDGSELDNRESNLPI 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136 + + +R+++ IQKSVE+G+ I P+ + + + + + I+A E Sbjct: 81 HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189 QC +P I P L +W C ++ + KL + I +PN Sbjct: 141 QCGRNEIPEIRPI----MKLTDW------------CKEQDDMLKLNLHPRAKYTIRQLPN 184 Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIG EGG +EE + F T + LG R+LR++TA++AA+ +Q GD Sbjct: 185 VPEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITALQVCFGD 242 >gi|205354017|ref|YP_002227818.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273798|emb|CAR38793.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629130|gb|EGE35473.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 259 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKRRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257 >gi|260599273|ref|YP_003211844.1| ribosomal RNA small subunit methyltransferase E [Cronobacter turicensis z3032] gi|260218450|emb|CBA33577.1| Ribosomal RNA small subunit methyltransferase E [Cronobacter turicensis z3032] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + ++ D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLVVGSEIALDEDAANHVGRVLRMSAGQALQLFDGSNQVFAAEITQANKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VLVNVVSAEEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMDLEAWCAEPDTGLKLNLHPRAAHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|290476315|ref|YP_003469219.1| hypothetical protein XBJ1_3337 [Xenorhabdus bovienii SS-2004] gi|289175652|emb|CBJ82455.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 123/254 (48%), Gaps = 30/254 (11%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64 + R++ L ++T+ S + +++ VLRM G + LF+G + + ++ I K+ Sbjct: 2 RIPRIYHPERLSVETEIYLSDEAANHVGRVLRMSNGQPLQLFDGSNQVFDAELIEASKKT 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITR 115 I+ ++ + K SD + SP+ + ++++ IQKSVE+G+ I P+++ Sbjct: 62 IKVRI-----TDGKLSDHE---SPLNLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSE 113 Query: 116 Y------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169 + + + + ISA EQC +P I P +LE D + ++ Sbjct: 114 RCGVKLDAERLEKKLQQWKKIVISACEQCGRNCIPEIRPVMSLEAWCAENDGSLKLNLHP 173 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S N+L + + +LIGPEGG +EE E + F T + LGPR+LR++T Sbjct: 174 RASQSINTLP-----LPVEKIRLLIGPEGGLSAEEIEMTANHQF-TDILLGPRVLRTETT 227 Query: 230 AVAAMALVQAICGD 243 A+ A+ +Q GD Sbjct: 228 ALTAITALQVRFGD 241 >gi|160940893|ref|ZP_02088233.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC BAA-613] gi|158436137|gb|EDP13904.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC BAA-613] Length = 249 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 120/226 (53%), Gaps = 12/226 (5%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80 + +G +++ +VLR+++G+ +L+ +G ++L + + G+ + ++ E + + S Sbjct: 17 RITGSDVNHIKNVLRIRQGEEMLVSDGTGRDYLCQAEEIAGQEVTVRILETEEEGRELPS 76 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 + K+++++++IQK+VE+G I PV TR T + + R + SA Sbjct: 77 RIWLFQGLPKSDKMEFIIQKAVELGAAGIVPVSTRNTVVKLDPKKEEAKVKRWQAIAESA 136 Query: 135 AEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 A+Q +P + TL+ +++ + +++ + G + + +L A ++A Sbjct: 137 AKQSKRSLVPRVSGIMTLKEAFDYVESQGFSVRLIPYEHEAGMDGTKTELDAAGPGQDIA 196 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IGPEGG+ E E S V P+SLG RILR++TA +A ++++ Sbjct: 197 VFIGPEGGFDEREIELALS-KGVRPISLGRRILRTETAGLALLSVL 241 >gi|20807439|ref|NP_622610.1| hypothetical protein TTE0958 [Thermoanaerobacter tengcongensis MB4] gi|20515963|gb|AAM24214.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 245 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++++FV+ K +GK G +H+L HVLR K GD I++ + + E L +I + K Sbjct: 1 MRKIFVEKG---KIKGKFAYVDGKDFHHLIHVLRYKVGDKIVVSDMAE-EHLGRIEKIEK 56 Query: 64 --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 +I F E + +V +K +++D ++QK E+G+ I P ++ ++ Sbjct: 57 DRAILFLEEKMEGNAESPLEVFLFQGILKADKMDLIVQKCTEIGVKRIIPFVSEFSVVDI 116 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 N ++R + + A +Q +P I P + + ++ + E + Sbjct: 117 KRANIDKKVERWKKISEEACKQSGRNIIPEISAPVSFKEAIEKAMECDLAIIPYEKEEKK 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E L + + I IGPEGG+ +E E + V P++LGPRILR++TAA+A A Sbjct: 177 RLKEVLKDVEDAKKIGIFIGPEGGFSQKEIEKAINNGIV-PVTLGPRILRAETAAIAVSA 235 Query: 236 LVQAICGD 243 +V GD Sbjct: 236 IVMYQLGD 243 >gi|332162804|ref|YP_004299381.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604355|emb|CBY25853.1| ribosomal RNA small subunit methyltransferase E [Yersinia enterocolitica subsp. palearctica Y11] gi|325667034|gb|ADZ43678.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858994|emb|CBX69352.1| ribosomal RNA small subunit methyltransferase E [Yersinia enterocolitica W22703] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 62 LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVDVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I L D + ++ S Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCTEQDDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|32034407|ref|ZP_00134589.1| COG1385: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207721|ref|YP_001052946.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus pleuropneumoniae L20] gi|165975693|ref|YP_001651286.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149504|ref|YP_001968029.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251645|ref|ZP_07337818.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252796|ref|ZP_07338956.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247218|ref|ZP_07529268.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249446|ref|ZP_07531435.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251763|ref|ZP_07533666.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254000|ref|ZP_07535848.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256261|ref|ZP_07538045.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258455|ref|ZP_07540193.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262823|ref|ZP_07544448.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096513|gb|ABN73341.1| hypothetical protein APL_0233 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875794|gb|ABY68842.1| hypothetical protein APJL_0238 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914635|gb|ACE60887.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648357|gb|EFL78553.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649487|gb|EFL79670.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856276|gb|EFM88429.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858520|gb|EFM90587.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860764|gb|EFM92774.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863026|gb|EFM94972.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865225|gb|EFM97124.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867460|gb|EFM99310.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871838|gb|EFN03557.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 37/239 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM EG+ I+LF+G + + + + VGK S ++S++ Sbjct: 21 SEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQIIAKIDGSELDNRESNLPI 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136 + + +R+++ IQKSVE+G+ I P+ + + + + + I+A E Sbjct: 81 HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189 QC +P I P L +W C ++ + KL + I +PN Sbjct: 141 QCGRNEIPEIRPIMK----LTDW------------CKEQDDMLKLNLHPRAKYTIRQLPN 184 Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIG EGG +EE + F T + LG R+LR++TA++AA+ +Q GD Sbjct: 185 VPEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITALQVCFGD 242 >gi|283788532|ref|YP_003368397.1| hypothetical protein ROD_50401 [Citrobacter rodentium ICC168] gi|282951986|emb|CBG91713.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 18/245 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++ P+ TQ D ++ VLRM G + LF+G + + ++I K S+ Sbjct: 5 RIYHPEPVTPGTQISLCEDAANHTGRVLRMGPGQPLQLFDGSNQVFDAEIVLASKKSVEV 64 Query: 68 KV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 KV E R + + S + ++++ IQKS+E+G+ I P+ + N Sbjct: 65 KVLRGEIDDRESPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNE 122 Query: 121 HYNMDRVR--TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N R + I+A EQC +P I P LE D ++ S N+L Sbjct: 123 RLNKKRQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASDSINTL 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q Sbjct: 183 P-----LPVERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITALQ 236 Query: 239 AICGD 243 GD Sbjct: 237 VRFGD 241 >gi|253690071|ref|YP_003019261.1| hypothetical protein PC1_3710 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756649|gb|ACT14725.1| protein of unknown function DUF558 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 244 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S D +++ VLRM G + LF+G + + ++I GK S+R + + K+S + Sbjct: 22 SDDAANHVGRVLRMNTGQALQLFDGSNHVFDAEIIAAGKKSVRVHF-TAGKLENKESPLH 80 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 + + ++++ IQKS+E+G+ I P+++ + +++ + I+A Sbjct: 81 LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKINQWQKIAIAAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ +P + P TLE D ++ S N+L + V +LIG Sbjct: 141 EQSGRNCVPLVRPAMTLEAWCAEQDSALKLNLHPRATQSINTLP-----LPVDRVRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG + E T+ S T + LGPR+LR++T A+ AM +Q GD Sbjct: 196 PEGGLTASEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242 >gi|197284242|ref|YP_002150114.1| hypothetical protein PMI0341 [Proteus mirabilis HI4320] gi|227357855|ref|ZP_03842203.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC 29906] gi|194681729|emb|CAR40885.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227161965|gb|EEI46983.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC 29906] Length = 243 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64 + R++ PL TQ + + +++ VLRM +G + LF+G + + + I KS Sbjct: 2 RIPRIYHPEPLSAGTQTSLAEEAANHVGRVLRMSKGQKLALFDGSNQVFDADIIESSKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ E Q + D+ + ++++ IQKSVE+G+ I P+I+ Sbjct: 62 VIVQINEGQMDDRESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDP 121 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + H ++ ISA EQC +P + P +LE D + ++ S Sbjct: 122 SRLEKKHQQWQKI---IISACEQCGRNKIPQLMPVMSLEAWCAQTDDSLKLNLHPRASQS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + V +LIGPEGG EE F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----LPVKKVRLLIGPEGGLSPEEIAMTAKYHF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|238759323|ref|ZP_04620489.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae ATCC 35236] gi|238702484|gb|EEP95035.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae ATCC 35236] Length = 261 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG N+ LF+G + + ++I K Sbjct: 20 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMMEGQNLQLFDGSNQVFTAEIIRADKKN 79 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 80 LIVRIAEGLLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 136 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I L D + ++ S Sbjct: 137 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAEQDDSLKLNLHPRANNS 196 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L A + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 197 INTLS-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 250 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 251 TALQVRFGD 259 >gi|68248905|ref|YP_248017.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae 86-028NP] gi|68057104|gb|AAX87357.1| conserved hypothetical RNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 245 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 39/259 (15%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 KVE R K+S ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 61 SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 T+ + + + I+A EQC ++P I P L+ +W C + Sbjct: 121 TERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA++AA++ +Q GD Sbjct: 224 RTETASLAAISALQICFGD 242 >gi|229174986|ref|ZP_04302505.1| RNA methyltransferase, RsmE [Bacillus cereus MM3] gi|228608447|gb|EEK65750.1| RNA methyltransferase, RsmE [Bacillus cereus MM3] Length = 249 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 22/245 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDG-----EWLSKISY 60 ++R FV+ +T + GD H++A V+RM GD+I NGK E S+ + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAICSIDEITSE--F 58 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VIT 114 + +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 59 INTAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVK 115 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETC 172 + ++R+R AAEQ +P ++ P + + LL N C + + +E Sbjct: 116 WDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSNEYDVCLVAYEEEAK 175 Query: 173 GSENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E S + L + + I+ GPEGG EE TL FV P SLGPRILR++TA Sbjct: 176 QGEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAP 234 Query: 231 VAAMA 235 + A++ Sbjct: 235 LYALS 239 >gi|227115169|ref|ZP_03828825.1| hypothetical protein PcarbP_19518 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S D +++ VLRM G ++ LF+G + + ++I GK S+R + + + K+S + Sbjct: 22 SDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKKSVRVRF-TAGKLEDKESPLH 80 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 + + ++++ IQKS+E+G+ I P+++ + + + + I+A Sbjct: 81 LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKISQWQKIAIAAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ +P + P TLE D+ ++ S N+L + V +LIG Sbjct: 141 EQSGRNCVPQVRPAMTLEAWCAEQDNALKLNLHPRATQSINTLP-----LPVARVRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG + E T+ S T + LGPR+LR++T A+ AM +Q GD Sbjct: 196 PEGGLTASEI-TMTSEYGFTDILLGPRVLRTETTALTAMTALQVRFGD 242 >gi|15617012|ref|NP_240225.1| hypothetical protein BU410 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681764|ref|YP_002468150.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682319|ref|YP_002468703.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471466|ref|ZP_05635465.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387295|sp|P57488|RSME_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|25345375|pir||G84977 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039077|dbj|BAB13111.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622052|gb|ACL30208.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624607|gb|ACL30762.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086144|gb|ADP66226.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086718|gb|ADP66799.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087303|gb|ADP67383.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087813|gb|ADP67892.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 253 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 21/232 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S + HY+ VLRMK D + +FN + +KI + K I ++ + +S + Sbjct: 30 SDENRHYVTKVLRMKIEDILEIFNNTHYIFFAKIIDISKKIIKIQTFKKILKNLESPLHI 89 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV---------RTYTIS 133 + K ++D+ IQKS+E+G+ I P+ + +N H+ R+ IS Sbjct: 90 HLGQVISKNEKMDFTIQKSIEIGVKTITPL---FFENDHFQKKRINFSNKIKRWEKIAIS 146 Query: 134 AAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A QC+ +P I P + N +++ +I+F ++ + L + I + I Sbjct: 147 ACRQCNRNIIPKIKIPMNVFHWCENNQNNDKKIIFHPKSTLTMKCLTE-----PIKYIQI 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +IG E G+ ++E + + F+ P+ LGPRILR++TA+V A+ +Q + GD+ Sbjct: 202 IIGSERGFFNDEFQKIIKYGFI-PIRLGPRILRTETASVVAITALQTMFGDF 252 >gi|145638791|ref|ZP_01794400.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII] gi|145272386|gb|EDK12294.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII] gi|309750281|gb|ADO80265.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2866] Length = 245 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ I LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQIELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGREVADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC ++P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + K LH AH IP V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA++ +Q GD Sbjct: 221 RVLRTETASLAAISALQICFGD 242 >gi|75911238|ref|YP_325534.1| 16S ribosomal RNA methyltransferase RsmE [Anabaena variabilis ATCC 29413] gi|75704963|gb|ABA24639.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 235 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S L+R+ + + Q + Q HYL VLR++EGD ++ +G WL++++ + Sbjct: 2 SQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLARLTE--EQ 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + E +++ + I P K + D +++ E+G+ I PV++ T + Sbjct: 60 AQVLEELAVKTELPVAITLMIALP-KGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSPQ 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEK 180 ++R R AAEQ + +P I P + N H E +N L Sbjct: 119 KLERWRRIAAEAAEQSERAFVPTILEPVAFSDAVNNVTAFHRYICEARGEYVHLQNLLTD 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + I IGPEGG+ +E E + F P+SLG RILR+ TA + A++L+ A Sbjct: 179 ISG-----EIVIAIGPEGGWTDKELEEAVTFGF-QPVSLGGRILRAVTAPLVALSLISAA 232 Query: 241 C 241 C Sbjct: 233 C 233 >gi|148825417|ref|YP_001290170.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae PittEE] gi|229846392|ref|ZP_04466500.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae 7P49H1] gi|148715577|gb|ABQ97787.1| hypothetical protein CGSHiEE_01535 [Haemophilus influenzae PittEE] gi|229810485|gb|EEP46203.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae 7P49H1] Length = 245 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S+++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC ++P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEK--LHAIAH--------IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + K LH AH IP+ V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPSEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA+ +Q GD Sbjct: 221 RVLRTETASLAAITALQICFGD 242 >gi|300921287|ref|ZP_07137656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1] gi|300411749|gb|EFJ95059.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1] Length = 255 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 14 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 74 VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 132 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 133 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMVLEAWCAEQDEGLKLNLHPRASNSIN 192 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 193 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 246 Query: 237 VQAICGD 243 +Q GD Sbjct: 247 LQVRFGD 253 >gi|261363907|ref|ZP_05976790.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996] gi|288567910|gb|EFC89470.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996] Length = 241 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88 +VLR++ G+ ++LFNG + +++ + K + + E + S K + VQ + S Sbjct: 27 NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRACAEVLREEETDNESPLKITLVQSVSS- 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 R+D+ +QKSVE+G+ AI+PVI+ + + R + +SA EQ Sbjct: 86 --GERMDFTLQKSVELGVVAIQPVISERCVVRLSGERADKRVARWQEIVVSACEQSGRNI 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGGYH 201 +P + P LK + S N + L A+ + I ++GPEGG+ Sbjct: 144 VPEVRPLLPYREALKQMSSETTKLLM-----SLNRAQSLRAVKPFSDDLIFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE++ F + ++LG R+LR++TA++AA+A +Q + GD+ Sbjct: 199 DEEEQLAFEAGFQS-VTLGKRVLRTETASLAAIAAMQTLWGDF 240 >gi|148827457|ref|YP_001292210.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae PittGG] gi|148718699|gb|ABQ99826.1| hypothetical protein CGSHiGG_04330 [Haemophilus influenzae PittGG] Length = 245 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 39/256 (15%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ + T+ Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDTER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + I+A EQC +P I P L+ +W C + Sbjct: 124 MDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ----DW------------CAENDGAL 167 Query: 180 K--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 K LH AH IP V +LIG EGG ++E F T + LG R+LR++ Sbjct: 168 KLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTE 226 Query: 228 TAAVAAMALVQAICGD 243 TA++AA++ +Q GD Sbjct: 227 TASLAAISALQICFGD 242 >gi|159030659|emb|CAO88329.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 233 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 17/237 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL +DF + +Q HYL V+R+K D + NG+ WL++I + S Sbjct: 4 RLLLDFNTLENGLITLTPEQSHYLKKVVRLKSHDRFIALNGQGQAWLAEI--IDNSAHL- 60 Query: 69 VEYQSRSQTKQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMD 125 ++ ++T + VQ + I N D +++ + E+G+ I P++T + +D Sbjct: 61 --LEAINETSELPVQVNLMVAIPKNGFDDIVRAATELGVYRIIPLLTERGLVNPSPQKID 118 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLH 182 R R A EQ + +P I P +LK N C I T L +L Sbjct: 119 RWRKIAREAVEQSERQIIPIIEEPQPFLAILKRGANPQTTCYIGVTRRTVAP--LLSQLQ 176 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I + IGPEGG+ E E + FV P+SLG RILR+ TA + A+A++ A Sbjct: 177 TSTEI---TMAIGPEGGWTETEIEQAIAADFV-PVSLGKRILRTITAPLVALAIINA 229 >gi|145631448|ref|ZP_01787218.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae R3021] gi|144982985|gb|EDJ90494.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae R3021] Length = 245 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCLLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S+++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC ++P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEK--LHAIAH--------IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + K LH AH IP+ V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPSEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA+ +Q GD Sbjct: 221 RVLRTETASLAAITALQICFGD 242 >gi|229006652|ref|ZP_04164286.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4] gi|228754513|gb|EEM03924.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4] Length = 249 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + GD H++A V+RM GD+I NGK +++I+ +V Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAMCTIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 SAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174 + ++R++ AAEQ +P ++ P + + LL N D++ C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMNSDYDVCLVAYEEEAKQG 177 Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E N + L A+ + ++ GPEGG EE L F+ P SLGPRILR++TA + Sbjct: 178 EKANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|170765588|ref|ZP_02900399.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627] gi|170124734|gb|EDS93665.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627] Length = 243 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 16/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S+ Sbjct: 3 IPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 KV + R +S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 63 EVKV-LEGRLDDHESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P +LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMSLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|221069844|ref|ZP_03545949.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1] gi|220714867|gb|EED70235.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1] Length = 246 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 23/222 (10%) Query: 34 HVLRMKEGDNILLFNGK------DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 VLR + GD I LF G+ GE+ + I+ +G+S + +V+ S ++ + + ++ Sbjct: 27 QVLRHQPGDIITLFEGQTGNGFTGGEFQATITRMGRSDVGVRVDSHSPAEREAARAVHLV 86 Query: 87 SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 + N R+D++++K+ E+G+ +I+PV+ + ++R ++ +SA EQC Sbjct: 87 VGMPANERMDWLVEKATELGVASIQPVMAARSVLKLKGDRADKKIERWQSIAVSACEQCG 146 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSLEKLHAIAHIPNVAILIG 195 +P I+ P +L +W + Q AD E + A + V +L G Sbjct: 147 RNQVPVIHAPLSL----ADWLRSKQAPAADAARLVLSLREGNQPLRIAAGNAHAVWVLHG 202 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG ++E++ + P SLG R+LR++TA+VA ++L+ Sbjct: 203 PEGGLTAQEEDWALEQGW-KPASLGSRVLRAETASVATLSLL 243 >gi|297621017|ref|YP_003709154.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297376318|gb|ADI38148.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 241 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 14/236 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R ++D PL + ++ G + H+LAHV R + G+ + L NGK ++++ + K+ Sbjct: 5 RFYLDSPLELDSRIAIGGQELHHLAHVSRARAGEEVELINGKGTLAVAEVLEIKKNEASL 64 Query: 69 VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN---THYNM 124 + + + S+ + I I + NRLD +++K E+GM +R + ++ + Sbjct: 65 LIHSTISEKPSAFPIIIAQAIPRPNRLDTIVEKCTELGMDELRLFPGKLSEKKDLKESQL 124 Query: 125 DRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL 181 R+ ISAA+Q L +P I YPP + W + + F D + + ++ Sbjct: 125 ARLTKIAISAAKQSGRLFIPSITFYPP------ISKWPPSDIPLYFGDLSDNAPLFFKRW 178 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +A +IGPE G H EE L L + + L ILR+DTA + A++L+ Sbjct: 179 NTSPPKQGIAFVIGPESGLHEEEVLQLEKLHAIG-VKLHQNILRTDTAPLTALSLI 233 >gi|114319523|ref|YP_741206.1| hypothetical protein Mlg_0361 [Alkalilimnicola ehrlichii MLHE-1] gi|114225917|gb|ABI55716.1| 16S rRNA m(3)U-1498 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 248 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 28/252 (11%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 R+ VD PL + +L R++ GD ++LF+G+ GE+ +++ + + R Sbjct: 5 RIHVDTPLAAGATLTLPAETTQHL-KAFRLRPGDELVLFDGRGGEYRARLEALERREARL 63 Query: 68 KV----EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT--------- 114 + + S + VQ + + R+D+ +QK+VE+G+ I PV T Sbjct: 64 ALLGHHPVERESPLALTLVQGV---ARGERMDFTVQKAVELGVRRIVPVFTDNGVVRLEA 120 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADET 171 R + + RV ++A EQC +P + PP L + L + +V T Sbjct: 121 RRREKRRQHWQRV---AVAACEQCGRNRVPEVAPPRPLAEVWPELAGGEAGQGLVL---T 174 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G + A + +LIGPEGG S+ + P+ LGPRILR++TA + Sbjct: 175 PGGRSLRALADAHPELRRAWLLIGPEGGL-SDAEVARACEAGAEPVGLGPRILRTETAGI 233 Query: 232 AAMALVQAICGD 243 A+A +Q + GD Sbjct: 234 TALAALQLLHGD 245 >gi|323452130|gb|EGB08005.1| hypothetical protein AURANDRAFT_14390 [Aureococcus anophagefferens] Length = 223 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 10/209 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSDVQY 84 Q+ Y+A V+R++EGD + F GEW + G ++ V+ + + + Sbjct: 5 QHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDETPRLDL 64 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQCDILT 142 F+P++ R +I+K+VE+G + PV T + + + AAEQC+ L Sbjct: 65 YFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQCERLR 124 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCG-SENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P + L L + V A+ G S L+ L A+L+GPEGG+ Sbjct: 125 VPVVEDVVDLASPLGDLPL---FVCAERADGASPRLLDALLGAELGDGAALLVGPEGGFS 181 Query: 202 SEEKETLH-SLPFVTPLSLGPRILRSDTA 229 + + S P T +SLG ILR++TA Sbjct: 182 DADLAAVRASNPDATFVSLGAGILRAETA 210 >gi|212638681|ref|YP_002315201.1| hypothetical protein Aflv_0838 [Anoxybacillus flavithermus WK1] gi|212560161|gb|ACJ33216.1| Uncharacterized protein conserved in bacteria [Anoxybacillus flavithermus WK1] Length = 252 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 15/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L+R FV + SGD H++ V+RM EGD +L N + L +I + + Sbjct: 4 LQRYFVRNEQIVGDHVMISGDDVHHIGRVMRMNEGDRLLCCNERSETMLCEIEQISNDFV 63 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ + + Y+ S +K ++ + ++QK E+G P+IT + + Sbjct: 64 RCRIIQWIEANVELPVHVYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIVKWDEK 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETC-GS 174 ++R + AAEQ +P +Y P T+ L+ W H+ I + +E G Sbjct: 124 KGDKKVERWQKIVKEAAEQSHRAYMPSVYAPMTIRELIA-WAHDIHYKCIAYEEEAKEGH 182 Query: 175 ENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S L + ++ I+ GPEGG +E L FV SLGPRILR++TA + A Sbjct: 183 HRSFAHLLQTMNKEDSLLIVFGPEGGLSEQEVALLKEHGFVA-CSLGPRILRAETAPLYA 241 Query: 234 MALV 237 ++ V Sbjct: 242 LSAV 245 >gi|81242430|gb|ABB63140.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 252 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ ++ Sbjct: 71 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLD 129 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243 Query: 237 VQAICGD 243 +Q GD Sbjct: 244 LQVRFGD 250 >gi|160895341|ref|ZP_02076112.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50] gi|156863034|gb|EDO56465.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50] Length = 248 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 123/241 (51%), Gaps = 11/241 (4%) Query: 7 LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--K 63 + R FVDF + + +G+ +++ +VLR+K D I++ +G+ ++ +IS + K Sbjct: 1 MNRFFVDFDGRVFDKSIDITGEDVNHIKNVLRLKVNDEIIISDGRGRDYRCQISVMDHEK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ ++++ K ++++++IQK+VE+G+ I PV+T+ T Sbjct: 61 VVADILDVCDNFAELETEITLFQGFPKADKMEWIIQKTVELGVTRIVPVMTKRTVVKLDA 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSEN 176 + +R + ++AA+Q +P + P T E L + + ++ +E G Sbjct: 121 KKAGKKTERYQAIALAAAKQSGRGVIPEVTAPVTWKEALAMAKELDMNMIPYEEAEGVAY 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S E +I ++ I IGPEGG+ EE + ++LG RILR++TA +A M++ Sbjct: 181 SKEVFASIKGKKSLGIFIGPEGGFAGEEVVAATDMG-AKMVTLGHRILRTETAGMAVMSI 239 Query: 237 V 237 + Sbjct: 240 I 240 >gi|161950046|ref|YP_404631.2| 16S ribosomal RNA methyltransferase RsmE [Shigella dysenteriae Sd197] gi|309785226|ref|ZP_07679857.1| RNA methyltransferase family protein [Shigella dysenteriae 1617] gi|308926346|gb|EFP71822.1| RNA methyltransferase family protein [Shigella dysenteriae 1617] Length = 243 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ ++ Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|145640243|ref|ZP_01795827.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae R3021] gi|145274829|gb|EDK14691.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae 22.4-21] Length = 245 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ +D Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120 Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 R I+A EQC ++P I P L+ +W C + Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA++AA++ +Q GD Sbjct: 224 RTETASLAAISALQICFGD 242 >gi|194431744|ref|ZP_03064035.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012] gi|194420100|gb|EDX36178.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012] gi|320181049|gb|EFW55970.1| Ribosomal RNA small subunit methyltransferase E [Shigella boydii ATCC 9905] gi|332086875|gb|EGI92011.1| RNA methyltransferase family protein [Shigella boydii 5216-82] gi|332087723|gb|EGI92850.1| RNA methyltransferase family protein [Shigella dysenteriae 155-74] Length = 243 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 16/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S+ Sbjct: 3 IPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + + Sbjct: 63 KVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEHDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|323162608|gb|EFZ48455.1| RNA methyltransferase family protein [Escherichia coli E128010] Length = 243 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|194436810|ref|ZP_03068910.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1] gi|194424292|gb|EDX40279.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1] Length = 243 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L I V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPIERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|160931277|ref|ZP_02078678.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753] gi|156869755|gb|EDO63127.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753] Length = 242 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 14/228 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEW---LSKISYVGKSIRFKVEYQSRSQTKQSD 81 +G ++ LRMK GD + L + + ++ + ++S ++ ++Q ++ S Sbjct: 17 TGPDAAHMCRSLRMKPGDTVTLCDTQGFDYQCVVQRLSPEEAALTIIDKHQCENEPSLSV 76 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISAA 135 + Y P K ++D+++QK+VE+G+ I PV ++R + + DR + + AA Sbjct: 77 ILYQGLP-KGEKMDWIVQKAVELGVSQIVPVRMERCVSRPDGKASQKKTDRWQKIAVEAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +QC LP + PP L +F E G S+ +L V++LIG Sbjct: 136 KQCGRGILPQVCPPADFHQALIQAAQAEVFLFCYE--GGGESVSRL-ITQKTKTVSVLIG 192 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ E E V P++LG RILR++TA +AA++++ G+ Sbjct: 193 PEGGFSLPEAEAARKAGGV-PVTLGKRILRTETAPLAALSVIMYASGN 239 >gi|261493725|ref|ZP_05990243.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494547|ref|ZP_05991031.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309796|gb|EEY11015.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310615|gb|EEY11800.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 225 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 37/239 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRMK+G+ I+LF+G + + + + V K S ++S++ Sbjct: 3 SEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPI 62 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136 + + +R+++ IQKSVE+G+ I P+ + + + + + I+A E Sbjct: 63 HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 122 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189 QC +P I P L +W C ++ + KL + I +PN Sbjct: 123 QCGRNEIPEIRPIMK----LTDW------------CKEQDDMLKLNLHPRAKYTIRELPN 166 Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIG EGG +EE S F T + LG R+LR++TA++AA+ +Q GD Sbjct: 167 VPKAGVRLLIGSEGGLSAEEIAMTESEGF-TEVLLGKRVLRTETASLAAITALQVCFGD 224 >gi|167042827|gb|ABZ07545.1| putative protein of unknown function (DUF558) [uncultured marine microorganism HF4000_ANIW137I15] Length = 261 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEW---LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI- 89 +R K GD I + +G+ E+ L+++++ G + R + R + + V Sbjct: 27 RAMRHKRGDVIRVSDGEFTEYEVELTELTHQGAAGRIR----GRKEIPEDRVVIRLGQAV 82 Query: 90 -KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD-IL 141 K +LD ++QK+VE+G+ I P+ + + + R R +A +QC+ + Sbjct: 83 PKGEKLDGVVQKAVELGVHFIHPIFAERSVPRLDERRAADRLKRWRRVAEAARKQCERVR 142 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNVAILIGPEGGY 200 + P + L FL ++ D + ++V + S L K L I +VA+L+GPEGG+ Sbjct: 143 PMEVAAPGSLLSFLDESEDADLKVVLHER---STVGLRKILSDTRDIRSVALLVGPEGGF 199 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E +T + F+ P LG RILR++TA +AA+A+++ + GD Sbjct: 200 SETEVQTARTAGFI-PCGLGTRILRTETAPIAAIAILEYVLGD 241 >gi|197263143|ref|ZP_03163217.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388493|ref|ZP_03215105.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205357558|ref|ZP_02571479.2| protein YggJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16421647|gb|AAL21969.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241398|gb|EDY24018.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199605591|gb|EDZ04136.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331209|gb|EDZ17973.1| protein YggJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248225|emb|CBG26062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159649|emb|CBW19168.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914116|dbj|BAJ38090.1| 16S rRNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225767|gb|EFX50821.1| Ribosomal RNA small subunit methyltransferase E [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131450|gb|ADX18880.1| protein YggJ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989961|gb|AEF08944.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 259 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 18/234 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129 + + S + ++++ IQKS+E+G+ I P+ + ++ + + + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I+A EQC +P I PP LE D ++ S N+L + Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257 >gi|145636562|ref|ZP_01792230.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH] gi|145270387|gb|EDK10322.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH] Length = 245 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ +D Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120 Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 R I+A EQC ++P I P L+ +W C + Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA++AA++ +Q GD Sbjct: 224 RTETASLAAISALQICFGD 242 >gi|119945034|ref|YP_942714.1| hypothetical protein Ping_1288 [Psychromonas ingrahamii 37] gi|119863638|gb|ABM03115.1| hypothetical protein DUF558 [Psychromonas ingrahamii 37] Length = 242 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R + L + T+ S D ++ HVLR++ G I+LFNG GE + ++ K Sbjct: 2 RIPRFYDPQTLTVATEVNLSKDAIQHI-HVLRLRPGAQIILFNGLGGEVQATLTSAQKRS 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +S + + + +R++++IQK+VE+G+ I P+++ Sbjct: 61 CTALINSFNQTDNESPLHLHLGQVISRGDRMEFVIQKAVELGVNEITPLLSERCGVKLDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + + ++A EQ +P I+ L ++ + ++ S N+ Sbjct: 121 QRMAKKQQQWQKIALAACEQSGRNIIPVIHETEALTTWCESAEQATKLTLHPRAKYSINT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I + +LIGPEGG +E +L F L LGPRILR++TAA++A+ + Sbjct: 181 LP-----PEIKRIRLLIGPEGGLSDQEVTLTETLNFTETL-LGPRILRTETAALSAITAL 234 Query: 238 QAICGD 243 Q GD Sbjct: 235 QCRFGD 240 >gi|254360572|ref|ZP_04976721.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213] gi|153091112|gb|EDN73117.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213] Length = 243 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 119/258 (46%), Gaps = 37/258 (14%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL S D +++ VLRMK+G+ I+LF+G + + + + V K Sbjct: 2 RIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L +W C ++ Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMK----LTDW------------CKEQDD 165 Query: 178 LEKL-------HAIAHIPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + KL + I +PNV +LIG EGG +EE S F T + LG R+LR Sbjct: 166 MLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGF-TEVLLGKRVLR 224 Query: 226 SDTAAVAAMALVQAICGD 243 ++TA++AA+ +Q GD Sbjct: 225 TETASLAAITALQVCFGD 242 >gi|161353586|ref|NP_462010.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267995259|gb|ACY90144.1| hypothetical protein STM14_3738 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 243 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 24/237 (10%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 16 TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128 + + S + ++++ IQKS+E+G+ I P+ +++ +D R Sbjct: 76 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPL---FSERCGVKLDSERLNKKRQQ 130 Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 I+A EQC +P I PP LE D ++ S N+L Sbjct: 131 WQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 186 VERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|331678938|ref|ZP_08379612.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591] gi|332280360|ref|ZP_08392773.1| conserved hypothetical protein [Shigella sp. D9] gi|81246842|gb|ABB67550.1| conserved hypothetical protein [Shigella boydii Sb227] gi|331073768|gb|EGI45089.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591] gi|332102712|gb|EGJ06058.1| conserved hypothetical protein [Shigella sp. D9] Length = 252 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 71 VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 129 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243 Query: 237 VQAICGD 243 +Q GD Sbjct: 244 LQVRFGD 250 >gi|156932614|ref|YP_001436530.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894] gi|156530868|gb|ABU75694.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 22/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 4 RIPRIYHPEPLVVGREIALDEDAANHVGRVLRMSAGQALQLFDGSNHVFAAEITQASKK- 62 Query: 66 RFKVEYQSRSQTKQSDVQYI-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 V SR + + ++ + + ++++ IQKS+E+G+ I P+ +++ Sbjct: 63 SVLVNVVSREEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPL---FSERCGV 119 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P I P LE D ++ Sbjct: 120 KLDEERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMELEAWCAEPDSGLKLNLHPRAAH 179 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S N+L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A Sbjct: 180 SINTLPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTA 233 Query: 234 MALVQAICGD 243 + +Q GD Sbjct: 234 ITALQVRFGD 243 >gi|325266078|ref|ZP_08132764.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394] gi|324982716|gb|EGC18342.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394] Length = 241 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 18/222 (8%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88 HVLR++ GD I+LF+G+ + + V K +I +E S S + +Q + S Sbjct: 26 HVLRLQAGDEIVLFDGQGMRVAATLQQVEKRKAACTIDSFLESDSESPLRIHLIQAVSS- 84 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 R+D+ +QKSVE+G+ +I PV++ + + R + +SA EQC Sbjct: 85 --GERMDFTLQKSVELGVASITPVLSERCVVRLQGERADKRVQRWQEIAVSACEQCGRDI 142 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P L L+ + +++ EK A P V +LIGPEGG+ + Sbjct: 143 VPPVRPILRLADYLRQAAAEDGLKLLMSLQNAQSLREKQPA--QRP-VYLLIGPEGGWTA 199 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E++ F ++LG RILR++TA++AA+A +Q + GD+ Sbjct: 200 AEEQAAVQAGF-EAITLGKRILRTETASLAAIAAMQTLWGDF 240 >gi|238795147|ref|ZP_04638737.1| Ribosomal RNA small subunit methyltransferase E [Yersinia intermedia ATCC 29909] gi|238725546|gb|EEQ17110.1| Ribosomal RNA small subunit methyltransferase E [Yersinia intermedia ATCC 29909] Length = 243 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIVRSDKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 62 LLVRLGEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I L D + ++ S Sbjct: 119 LDGERLAKKLQQWQKIAIAACEQCGRNRIPEIRSAMQLSDWCAEQDDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + NV +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----PTLNNVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|161984861|ref|YP_409378.2| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii Sb227] gi|187732729|ref|YP_001881719.1| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii CDC 3083-94] gi|191167926|ref|ZP_03029729.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A] gi|193063533|ref|ZP_03044622.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22] gi|193067437|ref|ZP_03048405.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019] gi|194426231|ref|ZP_03058786.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171] gi|209920405|ref|YP_002294489.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SE11] gi|218696544|ref|YP_002404211.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 55989] gi|256019252|ref|ZP_05433117.1| 16S ribosomal RNA methyltransferase RsmE [Shigella sp. D9] gi|260845616|ref|YP_003223394.1| hypothetical protein ECO103_3526 [Escherichia coli O103:H2 str. 12009] gi|260857079|ref|YP_003230970.1| hypothetical protein ECO26_4045 [Escherichia coli O26:H11 str. 11368] gi|260869633|ref|YP_003236035.1| hypothetical protein ECO111_3694 [Escherichia coli O111:H- str. 11128] gi|293449276|ref|ZP_06663697.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B088] gi|300824847|ref|ZP_07104950.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7] gi|301306391|ref|ZP_07212460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1] gi|301327362|ref|ZP_07220612.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1] gi|307310433|ref|ZP_07590081.1| protein of unknown function DUF558 [Escherichia coli W] gi|309794035|ref|ZP_07688460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7] gi|331669689|ref|ZP_08370535.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271] gi|187429721|gb|ACD08995.1| 16S rRNA methyltransferase RsmE [Shigella boydii CDC 3083-94] gi|190902011|gb|EDV61757.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A] gi|192930810|gb|EDV83415.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22] gi|192959394|gb|EDV89829.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019] gi|194415539|gb|EDX31806.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171] gi|209913664|dbj|BAG78738.1| conserved hypothetical protein [Escherichia coli SE11] gi|218353276|emb|CAU99232.1| conserved hypothetical protein [Escherichia coli 55989] gi|257755728|dbj|BAI27230.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257760763|dbj|BAI32260.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257765989|dbj|BAI37484.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|291322366|gb|EFE61795.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B088] gi|300522685|gb|EFK43754.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7] gi|300838386|gb|EFK66146.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1] gi|300846046|gb|EFK73806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1] gi|306909328|gb|EFN39823.1| protein of unknown function DUF558 [Escherichia coli W] gi|308122442|gb|EFO59704.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7] gi|315062252|gb|ADT76579.1| 16S rRNA methyltransferase [Escherichia coli W] gi|315256838|gb|EFU36806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 85-1] gi|320174058|gb|EFW49228.1| Ribosomal RNA small subunit methyltransferase E [Shigella dysenteriae CDC 74-1112] gi|320184293|gb|EFW59105.1| Ribosomal RNA small subunit methyltransferase E [Shigella flexneri CDC 796-83] gi|320202610|gb|EFW77180.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli EC4100B] gi|323168002|gb|EFZ53691.1| RNA methyltransferase family protein [Shigella sonnei 53G] gi|323180406|gb|EFZ65958.1| RNA methyltransferase family protein [Escherichia coli 1180] gi|323183517|gb|EFZ68914.1| RNA methyltransferase family protein [Escherichia coli 1357] gi|323377164|gb|ADX49432.1| protein of unknown function DUF558 [Escherichia coli KO11] gi|323946556|gb|EGB42579.1| RsmE family protein RNA methyltransferase [Escherichia coli H120] gi|324119741|gb|EGC13621.1| RsmE family protein RNA methyltransferase [Escherichia coli E1167] gi|331063357|gb|EGI35270.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271] gi|332091330|gb|EGI96418.1| RNA methyltransferase family protein [Shigella boydii 3594-74] Length = 243 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|28211650|ref|NP_782594.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium tetani E88] gi|28204092|gb|AAO36531.1| conserved surface protein [Clostridium tetani E88] Length = 250 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 18/231 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81 + ++ VLR+ D +++ N + E+L +ISY+ K +I+ K++ + S + Sbjct: 21 EDVKHIYKVLRLTTEDEVIINNCEGEEFLGEISYIDKKEVIVNIKEKLDINNESSIQV-- 78 Query: 82 VQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAA 135 Y+F + K N++D ++QK+ E+G+ I PVIT Y +DR+ I ++ Sbjct: 79 --YLFQGMPKANKMDLIVQKNCELGVREITPVITERVVVKQYGGEYKKLDRLEKIAIESS 136 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAIL 193 +QC +P + P + LL+ IV + ++ L I + ++ Sbjct: 137 KQCKRTLIPKVNNPVEFKDLLEELKIMDLIVVPYENQQGFGMKKLITKIEKNKIIKIGVV 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 IGPEGG+ +E E L + ++LGPRILR++TA A++L+ GD Sbjct: 197 IGPEGGFEEDEIEELEKIG-ANIITLGPRILRTETAGFTAVSLLMYELGDL 246 >gi|271502142|ref|YP_003335168.1| hypothetical protein Dd586_3632 [Dickeya dadantii Ech586] gi|270345697|gb|ACZ78462.1| protein of unknown function DUF558 [Dickeya dadantii Ech586] Length = 244 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQ 83 S D +++ VLRM G + LF+G + + ++I GK +V Y + +++ ++S + Sbjct: 22 SEDAANHVGRVLRMSAGQALQLFDGSNQVFEAEIVQAGKK-SVRVRYATGQTEDRESPLH 80 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 + + ++++ IQKS+E+G+ I P+++ + + + + I+A Sbjct: 81 LHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGVKLDGERLEKKIAQWQKIAIAAC 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P TLE D+ ++ N+L + + +LIG Sbjct: 141 EQCGRNRVPDIRPVQTLESWCAESDNGLKLNLHPRASQHINTLP-----LPVSRIRLLIG 195 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG ++E + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 196 PEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242 >gi|324005502|gb|EGB74721.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 57-2] Length = 261 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 20 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 79 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 80 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 138 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 139 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 198 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 199 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 252 Query: 237 VQAICGD 243 +Q GD Sbjct: 253 LQVRFGD 259 >gi|301027303|ref|ZP_07190649.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1] gi|300395109|gb|EFJ78647.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1] Length = 255 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 14 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 74 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 132 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 133 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 192 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 193 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 246 Query: 237 VQAICGD 243 +Q GD Sbjct: 247 LQVRFGD 253 >gi|300995473|ref|ZP_07181121.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1] gi|300304835|gb|EFJ59355.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1] Length = 254 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 13 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 72 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 73 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 131 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 132 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 191 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 192 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 245 Query: 237 VQAICGD 243 +Q GD Sbjct: 246 LQVRFGD 252 >gi|222034641|emb|CAP77383.1| UPF0088 protein yggJ [Escherichia coli LF82] gi|312947477|gb|ADR28304.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O83:H1 str. NRG 857C] Length = 243 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 118/247 (47%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E + +L T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEI-AMTALYQFTDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|94501841|ref|ZP_01308353.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65] gi|94426062|gb|EAT11058.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65] Length = 241 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 23/227 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY---QSRSQTKQSDVQYIF 86 H++ VLRM+ G + +FNG + + + + R KV+ +S + + +S + Sbjct: 26 HHVGKVLRMEAGRQLKVFNGSGHRYFD--ATIVHADRKKVQVRLGESHASSTESPLSIHL 83 Query: 87 SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-------YTISAAEQ 137 + K +++++ IQK+VE+G+ I P+ + + + N +R+ ISA EQ Sbjct: 84 GQVMSKGDKMEFTIQKAVELGVTDITPLWSEHC-DVKLNQERLEKKHKQWLGIIISACEQ 142 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 +P ++P +E L N + + + + + E L + +VAI +GPE Sbjct: 143 SGRDVIPHLHPTIKIEDWLANMETDVKWLL-------DPGAEPLQSKVAPKSVAIAVGPE 195 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG+ E + F + L +GPR+LR++TAA+ A+ ++Q+ GD+ Sbjct: 196 GGFSEGEVKLAQQQGFQSQL-IGPRVLRTETAALTAITILQSRWGDF 241 >gi|224369186|ref|YP_002603350.1| hypothetical protein HRM2_20880 [Desulfobacterium autotrophicum HRM2] gi|223691903|gb|ACN15186.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 250 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 23/252 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R ++ + +G + +L VLR+ GD + L +G+ ++I + + Sbjct: 1 MRRFYIKTDSICNGRAVITGQEARHLGTVLRLGPGDRVELVDGRGTIARAEIETLSHNTA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 S S +S V + +K ++D +++ E+G+ P + + + Sbjct: 61 VFTILDSSSPGAESPVHITLAQGMLKDKKMDMLVRHLTELGICQWIPFYSSRSIPKPDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177 + M+R A +QC LP I P + LLK + D++ +I F EN+ Sbjct: 121 RIYSRMERWNKIAREALKQCGRSMLPLIEDPIPFDQLLKTSTDYDGKIAFW------ENA 174 Query: 178 LEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +H I P+ + +LIGPEGG+ S E + F + SLGPRILR++TA++ Sbjct: 175 TAPIHTI-QTPSMEPAKKIIVLIGPEGGFSSFEIDAARENGFSS-CSLGPRILRAETASL 232 Query: 232 AAMALVQAICGD 243 A ALVQ + GD Sbjct: 233 TAAALVQYLFGD 244 >gi|215488244|ref|YP_002330675.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O127:H6 str. E2348/69] gi|215266316|emb|CAS10747.1| 16S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] Length = 243 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVISRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|237706401|ref|ZP_04536882.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|254037995|ref|ZP_04872053.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|331643639|ref|ZP_08344770.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736] gi|331648701|ref|ZP_08349789.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605] gi|331654458|ref|ZP_08355458.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718] gi|331674427|ref|ZP_08375187.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280] gi|12517492|gb|AAG58077.1|AE005525_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26109775|gb|AAN81980.1|AE016766_68 Hypothetical protein yggJ [Escherichia coli CFT073] gi|882475|gb|AAA69113.1| ORF_o252 [Escherichia coli str. K-12 substr. MG1655] gi|13363294|dbj|BAB37245.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|91073902|gb|ABE08783.1| hypothetical protein UTI89_C3335 [Escherichia coli UTI89] gi|209760100|gb|ACI78362.1| hypothetical protein ECs3822 [Escherichia coli] gi|209760102|gb|ACI78363.1| hypothetical protein ECs3822 [Escherichia coli] gi|209760104|gb|ACI78364.1| hypothetical protein ECs3822 [Escherichia coli] gi|209760106|gb|ACI78365.1| hypothetical protein ECs3822 [Escherichia coli] gi|226839619|gb|EEH71640.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|226899441|gb|EEH85700.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|281602283|gb|ADA75267.1| hypothetical protein SFxv_3218 [Shigella flexneri 2002017] gi|331037110|gb|EGI09334.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736] gi|331042448|gb|EGI14590.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605] gi|331047840|gb|EGI19917.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718] gi|331068521|gb|EGI39916.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280] Length = 252 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 71 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 129 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243 Query: 237 VQAICGD 243 +Q GD Sbjct: 244 LQVRFGD 250 >gi|194290708|ref|YP_002006615.1| 16S ribosomal RNA methyltransferase rsme [Cupriavidus taiwanensis LMG 19424] gi|193224543|emb|CAQ70554.1| conserved hypothetical protein, DUF558 [Cupriavidus taiwanensis LMG 19424] Length = 253 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 30/233 (12%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 A VLR+ GD I LF+G+ G + + +GK + ++ D P + Sbjct: 30 AQVLRLAPGDAITLFDGRGGSHAATLVELGK-------RHALARIGAHDAAEAEPPFRVT 82 Query: 92 --------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137 +++D++I+K+VE+G+ AI+P V+ + + +A EQ Sbjct: 83 LAQGLAGGDKMDWLIEKAVELGVAAIQPLQASRSVVRLSGERAQKRQSHWQALVQAACEQ 142 Query: 138 CDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSENSL--EKLHAIAHIPNVA 191 C LP + T L+ L ++ + +++ + + +L E+ A+ V Sbjct: 143 CGRNRLPAVAEVTNLDTWLARVAQSGNGGTRLLLSPRAAQALPALVAERREAL-LADGVT 201 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +LIGPEGG EE++ F T +SLGPRILR++TA +A +A + A+ G + Sbjct: 202 LLIGPEGGLAPEEEQAALQAGF-TGVSLGPRILRTETAGLACLATLNALLGGF 253 >gi|146312989|ref|YP_001178063.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter sp. 638] gi|145319865|gb|ABP62012.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter sp. 638] Length = 243 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 18/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80 S D +++ VLRM G + LF+G + + ++I+ K S++ + E R Sbjct: 21 SDDAANHVGRVLRMGAGQAVQLFDGSNQVFDAEITRADKKSVQVSILRGEVDDRESPLHI 80 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134 + + S + ++++ IQKS+E+G+ I P+ + + + + + + I+A Sbjct: 81 HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAIAA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I PP LE + ++ S N+L + V +LI Sbjct: 139 CEQCGRNRIPEIRPPMDLEAWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 194 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|305666561|ref|YP_003862848.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170] gi|88708830|gb|EAR01065.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170] Length = 235 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 12/221 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S ++ +++ VLR KE D +L+ NGK + +KI K + Q S TK+ Y Sbjct: 19 SPEESNHIIKVLRKKEDDILLITNGKGYMFEAKIILANAK---KCKAQITSTTKKHRKMY 75 Query: 85 IF----SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 F +P K+N R ++ ++K+ E+G+ I P+I ++ +R+ SA +Q Sbjct: 76 WFHLVVAPTKSNDRFEWFLEKATEIGVDEITPIICDNSERKIIKPERMEKVLQSAMKQSL 135 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + P + + + N + C E LE +A +V +LIGPEG Sbjct: 136 QAYLPKLNPAVSYKEFMGNSREGLLFI---AHCDEEEKLELKRRVAPDKDVTVLIGPEGD 192 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +E E+ + ++ P+SLG LR++TAA+ A V I Sbjct: 193 FSRKEIESAYENGYL-PVSLGRNRLRTETAAIVACTTVNLI 232 >gi|188496461|ref|ZP_03003731.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638] gi|218701656|ref|YP_002409285.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI39] gi|254162856|ref|YP_003045964.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli B str. REL606] gi|301027729|ref|ZP_07191039.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1] gi|331684573|ref|ZP_08385165.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299] gi|188491660|gb|EDU66763.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638] gi|218371642|emb|CAR19481.1| conserved hypothetical protein [Escherichia coli IAI39] gi|242378472|emb|CAQ33256.1| 16S rRNA m[3]U1498 methyltransferase monomer, subunit of 16S rRNA m[3]U1498 methyltransferase [Escherichia coli BL21(DE3)] gi|253974757|gb|ACT40428.1| hypothetical protein ECB_02776 [Escherichia coli B str. REL606] gi|253978923|gb|ACT44593.1| hypothetical protein ECD_02776 [Escherichia coli BL21(DE3)] gi|299879165|gb|EFI87376.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1] gi|309703301|emb|CBJ02637.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|323936051|gb|EGB32346.1| RsmE family protein RNA methyltransferase [Escherichia coli E1520] gi|323966463|gb|EGB61896.1| RsmE family protein RNA methyltransferase [Escherichia coli M863] gi|323971707|gb|EGB66935.1| RsmE family protein RNA methyltransferase [Escherichia coli TA007] gi|323978759|gb|EGB73840.1| RsmE family protein RNA methyltransferase [Escherichia coli TW10509] gi|327251714|gb|EGE63400.1| RNA methyltransferase family protein [Escherichia coli STEC_7v] gi|331078188|gb|EGI49394.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299] gi|332344845|gb|AEE58179.1| RNA methyltransferase [Escherichia coli UMNK88] Length = 243 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|322834233|ref|YP_004214260.1| hypothetical protein Rahaq_3541 [Rahnella sp. Y9602] gi|321169434|gb|ADW75133.1| protein of unknown function DUF558 [Rahnella sp. Y9602] Length = 243 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 14/227 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM+ G I LF+G + + + I+ V K Q +S + Sbjct: 21 SEDAANHVGRVLRMQPGQAIQLFDGSNQVFEASITQVDKKSVSVSLNQGVLADNESPLNL 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + ++++ IQKS+E+G+ I P+ + + + + + I+A E Sbjct: 81 HLGQVISRGEKMEFTIQKSIELGVNTITPLFSERCGVKLDGERLEKKLQQWQKIAIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +P I P LE D + ++ S N+L + +V +LIGP Sbjct: 141 QCGRNRIPEIRPAMQLEAWCNEQDDSLKLNLHPRASHSINTLP-----LPVSHVRLLIGP 195 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 196 EGGLSAEEIAMTSGYGF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|238785646|ref|ZP_04629623.1| Ribosomal RNA small subunit methyltransferase E [Yersinia bercovieri ATCC 43970] gi|238713425|gb|EEQ05460.1| Ribosomal RNA small subunit methyltransferase E [Yersinia bercovieri ATCC 43970] Length = 253 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL ++ S + +++ VLRM EG ++ LF+G + + +KI K Sbjct: 12 RIPRIYHPQPLQANSELALSDEAANHVGRVLRMAEGQSLQLFDGSNQVFDAKIIRADKKS 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 72 LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 128 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC T+P I L D + ++ S Sbjct: 129 LDGERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLADWCAEQDDSLKLNLHPRASNS 188 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 189 INTLP-----PSLNKVRLLIGPEGGLSADEITMTSRLGF-TDILLGPRVLRTETTALTAI 242 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 243 TALQVRFGD 251 >gi|218550193|ref|YP_002383984.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii ATCC 35469] gi|218357734|emb|CAQ90378.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 243 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPDPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|145632547|ref|ZP_01788281.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655] gi|144986742|gb|EDJ93294.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655] Length = 245 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ +D Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120 Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 R I+A EQC ++P I P L+ +W C + Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA++AA++ +Q GD Sbjct: 224 RTETASLAAISALQICFGD 242 >gi|30064262|ref|NP_838433.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str. 2457T] gi|38704129|ref|NP_311849.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. Sakai] gi|56480218|ref|NP_708711.2| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str. 301] gi|89109723|ref|AP_003503.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|90111515|ref|NP_417421.4| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|110643095|ref|YP_670825.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 536] gi|110806854|ref|YP_690374.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 5 str. 8401] gi|117625173|ref|YP_854161.1| hypothetical protein APECO1_3575 [Escherichia coli APEC O1] gi|157156709|ref|YP_001464298.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli E24377A] gi|157162405|ref|YP_001459723.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli HS] gi|161367531|ref|NP_289518.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 EDL933] gi|161486126|ref|NP_755407.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli CFT073] gi|162138377|ref|YP_542314.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UTI89] gi|168747562|ref|ZP_02772584.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4113] gi|168753898|ref|ZP_02778905.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4401] gi|168760088|ref|ZP_02785095.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4501] gi|168766953|ref|ZP_02791960.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4486] gi|168773415|ref|ZP_02798422.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4196] gi|168781805|ref|ZP_02806812.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4076] gi|168785804|ref|ZP_02810811.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC869] gi|168797521|ref|ZP_02822528.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC508] gi|170018813|ref|YP_001723767.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ATCC 8739] gi|170082498|ref|YP_001731818.1| hypothetical protein ECDH10B_3121 [Escherichia coli str. K-12 substr. DH10B] gi|191171800|ref|ZP_03033346.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11] gi|195937084|ref|ZP_03082466.1| 16S rRNA m3U1498 methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208807472|ref|ZP_03249809.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4206] gi|208813470|ref|ZP_03254799.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4045] gi|208818613|ref|ZP_03258933.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4042] gi|209396394|ref|YP_002272426.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4115] gi|217326972|ref|ZP_03443055.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. TW14588] gi|218555505|ref|YP_002388418.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI1] gi|218559937|ref|YP_002392850.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli S88] gi|218691070|ref|YP_002399282.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ED1a] gi|218706461|ref|YP_002413980.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UMN026] gi|238902068|ref|YP_002927864.1| hypothetical protein BWG_2668 [Escherichia coli BW2952] gi|253772216|ref|YP_003035047.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254794898|ref|YP_003079735.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. TW14359] gi|256024545|ref|ZP_05438410.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia sp. 4_1_40B] gi|261226258|ref|ZP_05940539.1| hypothetical protein EscherichiacoliO157_16928 [Escherichia coli O157:H7 str. FRIK2000] gi|261256484|ref|ZP_05949017.1| hypothetical protein EscherichiacoliO157EcO_11691 [Escherichia coli O157:H7 str. FRIK966] gi|291284267|ref|YP_003501085.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str. CB9615] gi|293406453|ref|ZP_06650379.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1412] gi|293412306|ref|ZP_06655029.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B354] gi|293416207|ref|ZP_06658847.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B185] gi|298382190|ref|ZP_06991787.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1302] gi|300947676|ref|ZP_07161845.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1] gi|306812150|ref|ZP_07446348.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101] gi|307139631|ref|ZP_07498987.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli H736] gi|312964791|ref|ZP_07779031.1| RNA methyltransferase family protein [Escherichia coli 2362-75] gi|331664529|ref|ZP_08365435.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143] gi|84027952|sp|P0AGL8|RSME_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|84027953|sp|P0AGL7|RSME_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|84027954|sp|P0AGL9|RSME_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|30042519|gb|AAP18243.1| hypothetical protein S3141 [Shigella flexneri 2a str. 2457T] gi|56383769|gb|AAN44418.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|85675756|dbj|BAE77009.1| hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|87082186|gb|AAC75983.2| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|110344687|gb|ABG70924.1| hypothetical protein YggJ [Escherichia coli 536] gi|110616402|gb|ABF05069.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115514297|gb|ABJ02372.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157068085|gb|ABV07340.1| conserved hypothetical protein TIGR00046 [Escherichia coli HS] gi|157078739|gb|ABV18447.1| conserved hypothetical protein TIGR00046 [Escherichia coli E24377A] gi|169753741|gb|ACA76440.1| protein of unknown function DUF558 [Escherichia coli ATCC 8739] gi|169890333|gb|ACB04040.1| predicted protein [Escherichia coli str. K-12 substr. DH10B] gi|187770823|gb|EDU34667.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4196] gi|188017770|gb|EDU55892.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4113] gi|189000650|gb|EDU69636.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4076] gi|189358446|gb|EDU76865.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4401] gi|189363856|gb|EDU82275.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4486] gi|189369285|gb|EDU87701.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4501] gi|189373969|gb|EDU92385.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC869] gi|189379845|gb|EDU98261.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC508] gi|190907835|gb|EDV67428.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11] gi|208727273|gb|EDZ76874.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4206] gi|208734747|gb|EDZ83434.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4045] gi|208738736|gb|EDZ86418.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4042] gi|209157794|gb|ACI35227.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4115] gi|217319339|gb|EEC27764.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. TW14588] gi|218362273|emb|CAQ99894.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218366706|emb|CAR04463.1| conserved hypothetical protein [Escherichia coli S88] gi|218428634|emb|CAR09563.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218433558|emb|CAR14461.1| conserved hypothetical protein [Escherichia coli UMN026] gi|238863019|gb|ACR65017.1| predicted protein [Escherichia coli BW2952] gi|253323260|gb|ACT27862.1| protein of unknown function DUF558 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254594298|gb|ACT73659.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|260448011|gb|ACX38433.1| protein of unknown function DUF558 [Escherichia coli DH1] gi|284922889|emb|CBG35978.1| conserved hypothetical protein [Escherichia coli 042] gi|290764140|gb|ADD58101.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str. CB9615] gi|291426459|gb|EFE99491.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1412] gi|291432396|gb|EFF05378.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B185] gi|291469077|gb|EFF11568.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B354] gi|294490749|gb|ADE89505.1| conserved hypothetical protein TIGR00046 [Escherichia coli IHE3034] gi|298277330|gb|EFI18846.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1302] gi|300452722|gb|EFK16342.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1] gi|305854188|gb|EFM54626.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101] gi|307554928|gb|ADN47703.1| 16S rRNA methyltransferase RsmE [Escherichia coli ABU 83972] gi|307625480|gb|ADN69784.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UM146] gi|312290347|gb|EFR18227.1| RNA methyltransferase family protein [Escherichia coli 2362-75] gi|313647996|gb|EFS12442.1| RNA methyltransferase family protein [Shigella flexneri 2a str. 2457T] gi|315137543|dbj|BAJ44702.1| hypothetical protein ECDH1ME8569_2846 [Escherichia coli DH1] gi|315614893|gb|EFU95531.1| RNA methyltransferase family protein [Escherichia coli 3431] gi|320189294|gb|EFW63953.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli O157:H7 str. EC1212] gi|320195065|gb|EFW69694.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli WV_060327] gi|320640592|gb|EFX10131.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. G5101] gi|320656635|gb|EFX24531.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662154|gb|EFX29555.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7 str. USDA 5905] gi|320667230|gb|EFX34193.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. LSU-61] gi|323188660|gb|EFZ73945.1| RNA methyltransferase family protein [Escherichia coli RN587/1] gi|323941968|gb|EGB38147.1| RsmE family protein RNA methyltransferase [Escherichia coli E482] gi|323951616|gb|EGB47491.1| RsmE family protein RNA methyltransferase [Escherichia coli H252] gi|323957330|gb|EGB53052.1| RsmE family protein RNA methyltransferase [Escherichia coli H263] gi|323960761|gb|EGB56382.1| RsmE family protein RNA methyltransferase [Escherichia coli H489] gi|324115039|gb|EGC09004.1| RsmE family protein RNA methyltransferase [Escherichia fergusonii B253] gi|325498503|gb|EGC96362.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii ECD227] gi|326338967|gb|EGD62782.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli O157:H7 str. 1044] gi|326343152|gb|EGD66920.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli O157:H7 str. 1125] gi|330908981|gb|EGH37495.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli AA86] gi|331058460|gb|EGI30441.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143] gi|332752989|gb|EGJ83373.1| RNA methyltransferase family protein [Shigella flexneri 4343-70] gi|332765363|gb|EGJ95581.1| ribosomal RNA small subunit methyltransferase E [Shigella flexneri 2930-71] gi|332999693|gb|EGK19278.1| RNA methyltransferase family protein [Shigella flexneri VA-6] gi|333000409|gb|EGK19992.1| RNA methyltransferase family protein [Shigella flexneri K-218] gi|333000605|gb|EGK20183.1| RNA methyltransferase family protein [Shigella flexneri K-272] gi|333015165|gb|EGK34508.1| RNA methyltransferase family protein [Shigella flexneri K-304] gi|333015286|gb|EGK34628.1| RNA methyltransferase family protein [Shigella flexneri K-227] Length = 243 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|298490147|ref|YP_003720324.1| hypothetical protein Aazo_0765 ['Nostoc azollae' 0708] gi|298232065|gb|ADI63201.1| protein of unknown function DUF558 ['Nostoc azollae' 0708] Length = 235 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 13/241 (5%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S L+R+ ++ ++Q + Q HYL VLR ++GD + +G WL+++ +G+ Sbjct: 2 SQLQRITINPSQLQESQLLLTPQQQHYLLRVLRSRDGDKFIAMDGISKWWLAQL--IGEQ 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + + ++ S + P K N D +++ S E+G+ I P+++ T + + Sbjct: 60 GQILEPLEVTTELPVSITLMVALP-KGNGCDDIVRCSTELGVTCILPILSDRTLLKPSPQ 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R R + AAEQ + +P I P + + C + C + + L Sbjct: 119 KLERWRRIALEAAEQSERAFVPTILEPVAFRTAI----NECASIH-RYICEARGNYPHLT 173 Query: 183 AIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +++ + I IGPEGG+ +E E F P+SLG RILR+ TA + A++L+ A Sbjct: 174 TVSNKFSSEIIIAIGPEGGWTDQELEIALESGF-QPISLGRRILRAVTAPIVALSLIAAA 232 Query: 241 C 241 C Sbjct: 233 C 233 >gi|85059999|ref|YP_455701.1| hypothetical protein SG2021 [Sodalis glossinidius str. 'morsitans'] gi|84780519|dbj|BAE75296.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 243 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++ PL + T D H+++ VLRM I LF+G + + ++++ V K Sbjct: 3 IPRIYHPAPLTVGTVLALGDDAAHHVSRVLRMTVDAPIALFDGSNHVFAARLTRVDKKGV 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ + ++S + + + ++++ IQKS+E+G+ I P+ + + Sbjct: 63 EATVLATQMEDRESLLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSARCGVKLEGE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + I A EQC L I P TLE + ++ ++ S+ Sbjct: 123 RLEKKLQQWHKIAIGACEQCGRNRLAEIRPAMTLEAWCAEQEAGLKLNLHPR---AQQSI 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L AH + +LIGPEGG +EE + F T + LGPR+LR++T A+ A+ +Q Sbjct: 180 NTLPLPAH--GIRLLIGPEGGLSAEEIALTANYGF-TDILLGPRVLRTETTALTAITALQ 236 Query: 239 AICGD 243 GD Sbjct: 237 VRFGD 241 >gi|34495822|ref|NP_900037.1| hypothetical protein CV_0367 [Chromobacterium violaceum ATCC 12472] gi|34101677|gb|AAQ58045.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 241 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++D L + Q + D VLR+ GD I LFNG+ GE+ + +S V K Sbjct: 1 MPRFYLDADLAVGQQ-LSLPDAVVRHVQVLRLNAGDAITLFNGRGGEYQAALSAVMKRDA 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 V + ++++ + + +++++ +QK VEMG+ +P V+ + Sbjct: 60 HCVIERFDDVSRETPLWLGLAQGISGGDKMEFTLQKGVEMGVSVFQPIAAGRSVVKLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177 + R + +SA EQ T+P + P TL E+L + + + +++ S Sbjct: 120 RADKRVARWQEIVVSACEQSGRNTVPQVLPILTLNEWLAQRQEADIRLIL------SPRG 173 Query: 178 LEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L +A P + L+ GPEGG+ ++E++ + + TPL LGPRILR++TAA+AA+A Sbjct: 174 DRSLAQLAERPARSWLMAGPEGGFSAQEEDAALAAGW-TPLKLGPRILRTETAALAAVAA 232 Query: 237 VQAICGDW 244 +QA+ GD+ Sbjct: 233 MQAVWGDY 240 >gi|309972536|gb|ADO95737.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2846] Length = 245 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC ++P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + K LH AH IP V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA++ +Q GD Sbjct: 221 RVLRTETASLAAISALQICFGD 242 >gi|170682172|ref|YP_001745107.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SMS-3-5] gi|170519890|gb|ACB18068.1| 16S rRNA methyltransferase RsmE [Escherichia coli SMS-3-5] Length = 243 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNRVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|319775828|ref|YP_004138316.1| RNA methyltransferase [Haemophilus influenzae F3047] gi|319896636|ref|YP_004134829.1| RNA methyltransferase [Haemophilus influenzae F3031] gi|329123672|ref|ZP_08252232.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116] gi|317432138|emb|CBY80489.1| conserved hypothetical RNA methyltransferase [Haemophilus influenzae F3031] gi|317450419|emb|CBY86635.1| conserved hypothetical RNA methyltransferase [Haemophilus influenzae F3047] gi|327469871|gb|EGF15336.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116] Length = 245 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCYLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ +D Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120 Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 R I+A EQC ++P I P L+ +W C + Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA++AA++ +Q GD Sbjct: 224 RTETASLAAISALQICFGD 242 >gi|229031960|ref|ZP_04187946.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271] gi|228729350|gb|EEL80341.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271] Length = 249 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE TL FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|157693044|ref|YP_001487506.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus pumilus SAFR-032] gi|157681802|gb|ABV62946.1| hypothetical protein BPUM_2277 [Bacillus pumilus SAFR-032] Length = 256 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 16/246 (6%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F+D + K G+ H+L++V+RMK G IL E LSKI + K Sbjct: 1 MQRYFIDLTKEEVIAKGAIVIKGEDVHHLSNVMRMKAGQEILCLTTDGFEALSKIDTITK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPV-----ITRY 116 +Q ++ V+ + K ++L+ +IQK E+G A P IT+ Sbjct: 61 EEVLCHLEGWTNQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITKL 120 Query: 117 TQ-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCG 173 Q +H DR AAEQ +P +YP +T + L L + C + + + + Sbjct: 121 DQKKSHKKRDRWEKIAKEAAEQSYRNIIPHVYPVSTFKELTQLASEFDKCVVAYEESSKE 180 Query: 174 SENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + ++ GPEGG +E E L +L V LGPRILR++TA + Sbjct: 181 GEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETLGAVI-CGLGPRILRTETAPL 239 Query: 232 AAMALV 237 A++ + Sbjct: 240 YALSAI 245 >gi|300940772|ref|ZP_07155318.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1] gi|300454472|gb|EFK17965.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1] Length = 253 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 16/226 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 D +++ VLRM G + LF+G + + ++I+ K S+ KV + + ++S + Sbjct: 33 DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGQLDDRESPLHIH 91 Query: 86 FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 + + ++++ IQKS+E+G+ I P+ + ++ + + + + I+A EQ Sbjct: 92 LGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQ 151 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C +P I P LE D ++ S N+L + V +LIGPE Sbjct: 152 CGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPE 206 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 207 GGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 251 >gi|315295635|gb|EFU54958.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 16-3] Length = 253 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 12 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 71 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 72 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 130 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 131 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 190 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 191 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 244 Query: 237 VQAICGD 243 +Q GD Sbjct: 245 LQVRFGD 251 >gi|325290539|ref|YP_004266720.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus glycolicus DSM 8271] gi|324965940|gb|ADY56719.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus glycolicus DSM 8271] Length = 245 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 24/234 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS------IRFKVEYQSRSQTKQ 79 G++ H+L VLR+ G+ IL F+ W I + K IR ++ ++ ++ K Sbjct: 18 GEELHHLTRVLRLGPGEEILGFDHSGRLWRGAIREINKEQAVCSVIRAEIP-ETEAKVK- 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133 V I K +++ +IQK E+GM + P+ TR + +DR R Sbjct: 76 --VYLIVGLSKGEKMELVIQKGTELGMTGLIPLRTRRSVMKLEGTKAEERVDRWRKIAGE 133 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A +QC + P + P + L + Q + E + + L + +A++ Sbjct: 134 AVKQCGRVIQPAVAPVLDWQDLPAYLPADTQWLIPFEGEKTVSLKACLKSFDPSLPMALI 193 Query: 194 IGPEGGYHSEE----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ +E KE L + +SLG RILR++TAA+AA+ +V A GD Sbjct: 194 IGPEGGFEPQEVLWAKEKLGA----KSISLGSRILRAETAAIAALTIVLAFYGD 243 >gi|296112908|ref|YP_003626846.1| putative RNA methyltransferase [Moraxella catarrhalis RH4] gi|295920602|gb|ADG60953.1| putative RNA methyltransferase [Moraxella catarrhalis RH4] gi|326567975|gb|EGE18072.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis BC1] gi|326577430|gb|EGE27314.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis O35E] Length = 247 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 30/246 (12%) Query: 7 LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL G+ A D H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 KS K++ +R+ ++ + + S + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117 Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 H DR ++ ++A EQC + +P LL W NCQ Sbjct: 118 AHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173 Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 SEN + KL +P N+++LIG EGG E + FV P +G R+LR++TA Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227 Query: 230 AVAAMA 235 V A++ Sbjct: 228 PVVALS 233 >gi|171060614|ref|YP_001792963.1| 16S ribosomal RNA methyltransferase RsmE [Leptothrix cholodnii SP-6] gi|170778059|gb|ACB36198.1| protein of unknown function DUF558 [Leptothrix cholodnii SP-6] Length = 247 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 14/238 (5%) Query: 9 RLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFVD PL +G H VLRM+ G+ +++FNG+ GEW +I+ +G+S ++ Sbjct: 4 RLFVDTPLQAGLDLSLPAGAARHV--QVLRMQPGEELIVFNGQGGEWRVRIARMGRSEVQ 61 Query: 67 FKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 VE + + V + R D++I+K+ E+G I P + + + Sbjct: 62 VLVEQFVDVDRELALHVTLVAGMPANERFDWLIEKATELGAAEIVPTMCERSVLRLSGER 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISAA+QC +P I +L + + + L Sbjct: 122 AQKKREHWQGIAISAAQQCGRTRVPHIAAVRSLSEERAGESADTPVTQLLLSLADAQPLG 181 Query: 180 KLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + A + I GPEGG+ +E +E L P SLGPR+LRS+TA +A ++ Sbjct: 182 RRLAARADTGAPLRIYSGPEGGF-TEAEERLLRQGGAQPTSLGPRVLRSETAPLAVLS 238 >gi|145634697|ref|ZP_01790406.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA] gi|145268242|gb|EDK08237.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA] Length = 245 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC ++P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPDIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + K LH AH IP V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA++ +Q GD Sbjct: 221 RVLRTETASLAAISALQICFGD 242 >gi|127514152|ref|YP_001095349.1| hypothetical protein Shew_3224 [Shewanella loihica PV-4] gi|126639447|gb|ABO25090.1| protein of unknown function DUF558 [Shewanella loihica PV-4] Length = 243 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 38/233 (16%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ VLRM G+ + LFNG +L++I + K++ +V + +S + + Sbjct: 27 HVGRVLRMGAGEQLELFNGDGHNYLTEIVTASKKNVEVRV-LSKEANDNESPLNLHLGQV 85 Query: 90 --KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 + +R+D+ +QKSVE+G+ I P+ + + + + + ISA EQ Sbjct: 86 ISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLTGERLEKKIQQWQKIVISACEQSGRS 145 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-----------IAHIPNV 190 T+P + P L D+ CG KL+ + P V Sbjct: 146 TVPEVRPAMQL----------------DDWCGEATQALKLNLHPRADHGINGLVMETPRV 189 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG +E + F T + LGPR+LR++TAA+ A++ +Q GD Sbjct: 190 RLLIGPEGGLSPQEIAMTETHAF-TDVLLGPRVLRTETAALTAISALQLKFGD 241 >gi|320529958|ref|ZP_08031034.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399] gi|320137755|gb|EFW29661.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399] Length = 248 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 26/249 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVG 62 ++RLF +P + + + +G H+LA V+R + GD + + G DG ++ ++ Sbjct: 1 MRRLF--YPGELTPEIRITGGDAHHLARVMRAQLGD-VHVVAGADGRAARMTVTAVARDA 57 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY- 116 ++R Y +++V + + +K + D+++QK+VE+G A+ P++T RY Sbjct: 58 VTLRLD-SYVEDDAPARAEVILVQALLKGEKTDFIVQKAVELGAAALHPIVTEHVVVRYD 116 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETC 172 + R + AA+QC L+L + P ++ +L + + + ++F C Sbjct: 117 AKKAAAKTARWQKIADEAAKQCGRLSLMHVAPVGAIDSILGDVEIFGGVDTTVIF----C 172 Query: 173 GSENSLEKLHAIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 ++ + A+ V +++G EGG+ E L + P+SLG ILR++TA Sbjct: 173 YEGERMQSMRAVLRTVMSARVVLIVGAEGGFSPTEAARL-TAAGAQPVSLGHLILRAETA 231 Query: 230 AVAAMALVQ 238 A+AA+ +VQ Sbjct: 232 AIAALTVVQ 240 >gi|311108286|ref|YP_003981139.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310762975|gb|ADP18424.1| RNA methyltransferase family protein [Achromobacter xylosoxidans A8] Length = 243 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 10/228 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F D PL + H+ VLR++ G+ + LFNG+ GE+ + + GK+ + Sbjct: 5 RFFCDIPLTAGARVALPDALAHHALRVLRLRAGEAVALFNGQGGEYPATLEVDGKAGFAQ 64 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD 125 + ++ R + + +++D++++K+VE+G + P+ + + Q + +D Sbjct: 65 LGQFLPREAELAGRITLVQGLPSGDKMDWVVEKAVELGAARVCPIAAQRSVLQLSGPRLD 124 Query: 126 RVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + SA+EQC L + P TL L+ +++ E S++ L Sbjct: 125 KRVAHWQRIAQSASEQCGRNRLMAVDAPFTLADWLQQPADGLRLMCHPEA--SDDLAGAL 182 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 A+ ++ + +L+GPEGG+ +E V + GPR+LR++TA Sbjct: 183 RAVPNLQALTLLVGPEGGWSDKELAQAREA-GVQAVRFGPRVLRTETA 229 >gi|118444754|ref|YP_878563.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium novyi NT] gi|118135210|gb|ABK62254.1| conserved hypothetical protein TIGR00046 [Clostridium novyi NT] Length = 251 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 11/229 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 G+ ++ VLR+KEGD + + + E+L I Y+ KS + K+ + + Sbjct: 19 EGEDVKHIYKVLRLKEGDKVNINDCNGKEFLGTIDYIDKSKVEVKLLEELEINNEPPIEV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-------HYNMDRVRTYTISAA 135 Y++ + K +++D ++QK E+G+ I PV+T ++ +DR A Sbjct: 79 YLYQGLPKASKMDLIVQKCTELGIREITPVVTGRVASSINDIKRESKKLDRWNRIAFEAC 138 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIPNVAILI 194 +Q +P + ++ L + IV E + + + + + V I+I Sbjct: 139 KQNKRTLIPKVNDIMNMDELKEQLKEMDLIVVPYENAENYGIKQMIKNVTGEVKKVGIII 198 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG+ EE E L ++ ++LGPRILR++TA +AL+ GD Sbjct: 199 GPEGGFEQEEIEELKNME-AQIVTLGPRILRTETAGFTCLALLMYELGD 246 >gi|326566657|gb|EGE16798.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 12P80B1] Length = 241 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 30/246 (12%) Query: 7 LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL G+ A D H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 KS K++ +R+ ++ + + S + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117 Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 H DR ++ ++A EQC + +P LL W NCQ Sbjct: 118 AHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173 Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 SEN + KL +P N+++LIG EGG E + FV P +G R+LR++TA Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227 Query: 230 AVAAMA 235 V A++ Sbjct: 228 PVVALS 233 >gi|114561729|ref|YP_749242.1| hypothetical protein Sfri_0543 [Shewanella frigidimarina NCIMB 400] gi|114333022|gb|ABI70404.1| protein of unknown function DUF558 [Shewanella frigidimarina NCIMB 400] Length = 246 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ VLRM GD I LFNG ++L++I K + +S + Sbjct: 24 DGVAHIGRVLRMGMGDQISLFNGDGNDYLAEIIETSKKSIAVTVLSCEANNSESPLDLHL 83 Query: 87 SPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAEQC 138 + + +R+++ +QKSVE+G+ I P+ + + + + + ISA EQ Sbjct: 84 GQVISRGDRMEFTVQKSVELGVTTITPLFSDRCGVKLSGERLEKKLQQWQKIVISACEQS 143 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + P TL + ++ N L+ L H V +LIGPEG Sbjct: 144 GRSIVPIVRPAMTLAQWCEESTEALKLNLHPRASHGINGLQ-LSGQHH--KVRLLIGPEG 200 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G EE + F T + LGPR+LR++TA++ A+ +Q GD Sbjct: 201 GLSDEEIAMTETQHF-TDILLGPRVLRTETASLTAITALQVKFGD 244 >gi|229129591|ref|ZP_04258560.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4] gi|229152513|ref|ZP_04280704.1| RNA methyltransferase, RsmE [Bacillus cereus m1550] gi|228630944|gb|EEK87582.1| RNA methyltransferase, RsmE [Bacillus cereus m1550] gi|228653859|gb|EEL09728.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4] Length = 249 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-TCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|150015721|ref|YP_001307975.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium beijerinckii NCIMB 8052] gi|149902186|gb|ABR33019.1| protein of unknown function DUF558 [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQS 73 +T+GK GD ++ VLR+ EG+ ++L N + E+L +I + KS I +++ + Sbjct: 13 ETEGKILGDDVKHIYKVLRLSEGEEVVLNNCEGIEYLGEIETITKSEVIVKIIKRLDINN 72 Query: 74 RSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR 128 S+ K ++F + K ++D ++QK E+G+ PV T + +DR+ Sbjct: 73 ESKVK----VHLFQGLPKGQKMDLIVQKGTELGVSEFIPVTTARVDVKLKGEFKKLDRLN 128 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHA-- 183 + A +Q +P + + I+ E G + + KL Sbjct: 129 RIALEACKQSKRSVIPQVKEVIDFNEAINELKKMDLIIVPYENAEDFGIKTLVRKLERDS 188 Query: 184 --IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + I NV ILIGPEGG+ E + L ++LG RILR++TA A AL+Q Sbjct: 189 VDLDTINNVGILIGPEGGFEESEIDDLKE-QGAYIVTLGNRILRTETAGFTATALIQYEL 247 Query: 242 GDW 244 GD Sbjct: 248 GDL 250 >gi|91776603|ref|YP_546359.1| hypothetical protein Mfla_2251 [Methylobacillus flagellatus KT] gi|91710590|gb|ABE50518.1| 16S rRNA m(3)U-1498 methyltransferase [Methylobacillus flagellatus KT] Length = 245 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 21/232 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQ---SRSQTKQ 79 +G+ + + LRM+ GD+ +LFNG +LS+++ + K I +E Q + S K Sbjct: 21 AGNAASHASKALRMQVGDHAILFNGDGHNYLSRLTSIRKQEVIAEVLEAQPCPTESPLKI 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133 + Q I S +R+D+ IQK+VEMG+ +I+P+ ++ + + + + IS Sbjct: 81 TLAQAISS---GDRMDFTIQKAVEMGVSSIQPIFSQRSIVKLTGERAEKRREHWQNVAIS 137 Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A EQ +P + P L E+L + + I A G+ +L +L + ++ + Sbjct: 138 ACEQSGRAYIPPVAPAINLSEWLAQKPGADAYITLAP---GAPLTLPQLTSPTR--HICL 192 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 LIGPEGG E F T + +GPRILR++TAA+AA+A +Q + GD+ Sbjct: 193 LIGPEGGLADHEIALAAQHGF-TLVRMGPRILRTETAAIAAIASMQTLWGDF 243 >gi|255065808|ref|ZP_05317663.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256] gi|255050126|gb|EET45590.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256] Length = 241 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 27/226 (11%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88 +VLR++ G+ ++LFNG + +++ + K + + E + S K + VQ + S Sbjct: 27 NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRACAEVLREEEADNESPLKITLVQSVSS- 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 R+D+ +QKSVE+G+ AI+PVI+ + + R + +SA EQ Sbjct: 86 --GERMDFTLQKSVELGVVAIQPVISERCVVRLSGERADKRVARWQEIVVSACEQSGRNI 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPEG 198 +P + P LK + ET SL + ++ + ++ ++GPEG Sbjct: 144 VPEVRPLLPYREALKQ--------MSSETTKLLMSLNRAQSLRTVKPFSDDLIFMVGPEG 195 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G+ EE+ F + ++LG R+LR++TA++AA+A +Q + GD+ Sbjct: 196 GWTDEEERMAFEAGFQS-VTLGKRVLRTETASLAAIAAMQTLWGDF 240 >gi|302874303|ref|YP_003842936.1| hypothetical protein Clocel_1419 [Clostridium cellulovorans 743B] gi|307689431|ref|ZP_07631877.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium cellulovorans 743B] gi|302577160|gb|ADL51172.1| protein of unknown function DUF558 [Clostridium cellulovorans 743B] Length = 248 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 16/230 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE----YQSRSQTKQSD 81 G+ ++ VLR+K GD + + + E+ +K++ + K K E S +++ Sbjct: 20 GEDVKHIYKVLRLKVGDIVNINDCNGTEYNAKLTSIDKK-EVKAEIIETLDSNNESPIKI 78 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTH--YNMDRVRTYTISAAEQC 138 V Y P K ++DY++QK E+G+ A PV T R NT +DR+ AA+Q Sbjct: 79 VLYQGMP-KATKMDYIVQKGTEVGINAFIPVNTERVVVNTSEFKKLDRLNRIAKEAAKQS 137 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN----SLEKLHAIAHIPNVAILI 194 +P ++ P E LLK + IV E +EN +L K + +VAI+I Sbjct: 138 KRTIIPKVHEPIEFEELLKELEEYSLIVVPYEN--AENFGIKNLAKGVKKEEVDSVAIII 195 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG+ E E L S+ ++LGPRILR++TA V +L+ GD Sbjct: 196 GPEGGFEDSEIERLKSIN-AHIVTLGPRILRTETAGVVCASLIMYELGDM 244 >gi|119899122|ref|YP_934335.1| 16S ribosomal RNA methyltransferase RsmE [Azoarcus sp. BH72] gi|119671535|emb|CAL95448.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 243 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 10/222 (4%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYIFSP 88 H+ VLRM++G+ I+LF+G E + + GKS + Y+ + D+ + + Sbjct: 25 HHATRVLRMRDGEPIVLFDGSGAEAEATLVLRGKSAAALISAYREVDRESPLDLVLVQAL 84 Query: 89 IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +++D+++QK+VE+G A++P V+ + + + + A EQ Sbjct: 85 ATGDKMDWIVQKAVELGARAVQPIQAERSVLRLAGERATRRREHWQQVAVGACEQSGRNR 144 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + +L+ L + V + L L A + +L+GPEGG+ Sbjct: 145 IPEVGEILSLQAYLAAAREDRATVRCVLDPAAAQGLSALPRPAG--ALHLLVGPEGGWSD 202 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E + TP+ LGPR+LR++TA +A +A +QA GD+ Sbjct: 203 DELAACAA-AHCTPVGLGPRVLRTETAGLAMLAALQARWGDF 243 >gi|221632371|ref|YP_002521592.1| hypothetical protein trd_0341 [Thermomicrobium roseum DSM 5159] gi|221155488|gb|ACM04615.1| conserved hypothetical protein TIGR00046 [Thermomicrobium roseum DSM 5159] Length = 265 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 26/225 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYIFS 87 H L VLR++ GD +LL +G+ ++++++ + +++ V+ Q + + + Sbjct: 28 HQLVRVLRLRPGDRVLLCDGRAIDFVAELIELDPERTVAVLVDAQPARPLPPPPIVLLQA 87 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 ++ + D +++K+ E+G+ I P+ T+ T ++ + R + + A+EQC Sbjct: 88 LLRHDHFDLVVEKATELGIVRIVPLHTQRTVVHLALRDVTQRLARWQRIAMEASEQCGRG 147 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAILIGP 196 TLP I P+TL+ L +VF + + AIAH V + +GP Sbjct: 148 TLPEIDTPSTLDRALATVRTARLLVFWEAP--------EAEAIAHASFSPDQTVTVAVGP 199 Query: 197 EGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EGG+ +EE H F SLGP ILR++TAA++ +A VQA Sbjct: 200 EGGWTAEEIALFRRHGAEF---RSLGPLILRAETAAISGIAAVQA 241 >gi|78188184|ref|YP_378522.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium chlorochromatii CaD3] gi|78170383|gb|ABB27479.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 247 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 19/229 (8%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79 Q G+++H+L VLR +EG+ IL+ +G +I+ + K ++ ++ + + Sbjct: 17 QVSIEGEEFHHLVRVLRKREGELILVTDGNGLRCEVRIASISKHDVQGEIISTTTIEPPS 76 Query: 80 SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 + V S +K R ++ ++K+ E+G+ I P++T T H + R RT + Sbjct: 77 TRVTVALSLLKNPQRFEWFLEKATELGISTIIPMVTARTVVQPSNDRVHNKLKRWRTIVL 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 SAA Q LP + P +L +D C A S LH N+ Sbjct: 137 SAARQSKRYYLPQVVEPQRFSDVLNRSGYDERCMPFEAA------TSSPTLHCAGK--NI 188 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 LIG EGG+ +EE + + T +SLG ILR++TAA+ A+A V++ Sbjct: 189 LFLIGGEGGFSAEEVQQAEATGCRT-MSLGTTILRAETAALFAVAYVRS 236 >gi|301169013|emb|CBW28610.1| predicted protein [Haemophilus influenzae 10810] Length = 245 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 45/259 (17%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ +D Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120 Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 R I+A EQC +P I P L+ +W C + Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA++AA++ +Q GD Sbjct: 224 RTETASLAAISALQICFGD 242 >gi|39995554|ref|NP_951505.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sulfurreducens PCA] gi|39982317|gb|AAR33778.1| conserved hypothetical protein TIGR00046 [Geobacter sulfurreducens PCA] gi|298504560|gb|ADI83283.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter sulfurreducens KN400] Length = 260 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 17/230 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 GD + ++A LR+K ++L +GK+ E I+ +G+ V R Q + D + Sbjct: 20 GDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRD-SLTVTISERRQIR-GDGDGL 77 Query: 86 FSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 + + K ++++ ++QKS E+G+ + P + + + + R + A Sbjct: 78 WLTLCQGLPKGDKMELILQKSTELGVSEVVPFLAERSVPRISPEREQERLRRWQRVAEEA 137 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193 A Q +P + L ++ DH+ +++ ++ +L + A A P +A++ Sbjct: 138 ARQAGCPAVPRVQLARGLTEAVRGTDHDLKLLLWEDE--RTTTLAGVLAAAQTPKRIAVV 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +GPEGG+ + E FV P++LG RILR++TA +A +A++Q + GD Sbjct: 196 VGPEGGFTAAEAAEAREAGFV-PVTLGRRILRTETAGIALVAILQYLYGD 244 >gi|332971497|gb|EGK10447.1| 16S rRNA methyltransferase RsmE [Kingella kingae ATCC 23330] Length = 240 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 17/221 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIK 90 VLR+ GD+++LF+G+ + ++ +GK + Q S++ S + + + Sbjct: 26 QVLRLNVGDDLILFDGRGKRVHATLTELGKRKAACTLAPTEQINSESALS-IHLLQAISS 84 Query: 91 TNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 R+D+ IQKSVE+G+ +I P V+ + + R + ISA EQC +P Sbjct: 85 GERMDFTIQKSVELGVASITPIWSERCVVKLQGERADKRVQRWQDIAISACEQCGRDIVP 144 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSE 203 + P + +K + S + L A+ P V ++IGPEGG+ + Sbjct: 145 EVRPIVRFDDYIKQMPREQLHLLM-----SLQQAKSLQAMQPAPQTVYLMIGPEGGWTAA 199 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E++ F + LG R+LR++TA++AA+A +Q + GD+ Sbjct: 200 EEQAALDAGF-QAIVLGKRVLRTETASLAAIAAMQTLWGDF 239 >gi|224541750|ref|ZP_03682289.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM 15897] gi|224525354|gb|EEF94459.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM 15897] Length = 244 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 116/226 (51%), Gaps = 19/226 (8%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDV 82 A Y ++ V+RM++G++++ + L +I + + + + K E Q ++ +V Sbjct: 18 ADDSMYKHMTKVMRMEKGEHVICIDEDKHVCLCEIIDLKQGLLQIKEELQENNEL-DVEV 76 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS--AAE 136 ++ K+++ +++IQK+ E+G+ I P+ + T +N + R I+ A+E Sbjct: 77 TLVYGLPKSDKFEFVIQKATELGVTRIVPLRASRSIVKMDETRFNKKKERFVRIAQEASE 136 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEKLHAIAHIPNVA 191 QC +P I PP L L + + +E+ E+ +L+ LH ++ Sbjct: 137 QCHRQIVPEITPPIQLSQLKDYLSEVNVVAYEEESKNGEHHAFTKALDALHT-----SIT 191 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I++GPEGG+ +E E + + V P S+G RILRS+TA + ++++ Sbjct: 192 IIVGPEGGFDLQEVEKMQVMG-VVPCSIGNRILRSETAPLYMLSVI 236 >gi|86607114|ref|YP_475877.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. JA-3-3Ab] gi|86555656|gb|ABD00614.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 272 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 18/234 (7%) Query: 5 SHLKRLFVDFPLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 S L RL +D P G + +G Q HYL V R+K GD L+ +G WL+ G Sbjct: 11 SSLPRLAID-PAQRDAGGVLRLTGPQEHYLQRVRRLKPGDPFLVLDGSGKLWLAHWQPQG 69 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120 + +VE R + + +K D + ++ E+G I P++T T + Sbjct: 70 SQVMGEVEALPRELPVY--LHLGLAVVKGPGFDEVFRQVTELGAARITPLLTERTVVEPG 127 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 +R + AAEQC+ L P + PPT +W + + EN Sbjct: 128 WGRRERWQKIVQEAAEQCERLRWPQVDPPTP----WTSWLAELKADWWGIAVARENAPLL 183 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +L KL P +A+ IGPEGG+ E+ + V P+SLG ILRS T Sbjct: 184 LQALPKLRLSERDPVLAVAIGPEGGWTEAERRQAEAHGGV-PVSLGTTILRSTT 236 >gi|123443620|ref|YP_001007592.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090581|emb|CAL13450.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 243 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 117/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL ++ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANSELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 62 LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I L D + ++ S Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAAQDDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|188534950|ref|YP_001908747.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99] gi|188029992|emb|CAO97876.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99] Length = 243 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + S + +++ VLRM G + LF+G D + ++I+ K Sbjct: 2 RIPRIYHPAPLDAGNEIALSEEAANHVGRVLRMGPGQRLELFDGTDLTFAAEITQADKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + +R +++S + + + ++++ IQK+VE+G+ I P+ +++ Sbjct: 62 VHVRIHTARDDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P + TLE D ++ S Sbjct: 119 LDAERLAKKIQQWQKIAIAACEQCGRNRIPEVRQAMTLEAWCAEQDRGLKLNLHPRADHS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----LPVERVRLLIGPEGGLSADEISMTARYGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|16272258|ref|NP_438470.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae Rd KW20] gi|260581228|ref|ZP_05849047.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae RdAW] gi|1176097|sp|P44627|RSME_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|1573272|gb|AAC21968.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092153|gb|EEW76097.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae RdAW] Length = 245 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + K LH AH IP V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA++ +Q GD Sbjct: 221 RVLRTETASLAAISALQICFGD 242 >gi|228999104|ref|ZP_04158686.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17] gi|228760721|gb|EEM09685.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17] Length = 249 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + GD H++A V+RM GD+I NGK +++I+ +V Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAMCTIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 SAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174 + ++R++ AAEQ +P ++ P + + LL + D++ C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQG 177 Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E N + L A+ + ++ GPEGG EE L F+ P SLGPRILR++TA + Sbjct: 178 EKANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|281179955|dbj|BAI56285.1| conserved hypothetical protein [Escherichia coli SE15] Length = 243 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQVLQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPVMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|253698878|ref|YP_003020067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sp. M21] gi|251773728|gb|ACT16309.1| protein of unknown function DUF558 [Geobacter sp. M21] Length = 246 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 19/232 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSD 81 +G+ Y ++A VLR+KEG + L + VG ++R ++ Sbjct: 19 TGELYRHMARVLRIKEGSEVELIENGGARHRGTVEEVGAKKLTVRISASVAPSAEEPGLR 78 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135 + + K +LD ++QK E+G+ A R V+ + + + R AA Sbjct: 79 ITLLQGMPKGEKLDLILQKCTELGVAEVVVFDAARSVVKLHGDRSAARLSRYEKIVQEAA 138 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH----AIAHIPNVA 191 Q + P + TL +L + H +++ + G E + LH A+ +VA Sbjct: 139 RQSGRHSSPKVALGGTLAEVLADSSHEVKLLLYE---GEEKT--TLHDCFGAVVAPKSVA 193 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +++GPEGG EE + F TP++LG RILR++TA +A ++++Q GD Sbjct: 194 VVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSILQFHWGD 244 >gi|300690423|ref|YP_003751418.1| ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum PSI07] gi|299077483|emb|CBJ50108.1| putative ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum PSI07] Length = 249 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R +D PL T ++ HVLR+ GD++ LF+G E+ +++ + + R Sbjct: 3 LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGREFRARLDAINR--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116 + + ++ +Y + + +++D++I+K+VE+G+ AI P V+ Sbjct: 60 DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQAERGVVRLS 119 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + +A EQC +P + P TL L + + GS++ Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPAVSPVATLRDWLAAAKTSDRARVMLSPRGSQS 179 Query: 177 -------SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S E++ + + +LIGPEGG S ++E+L PL+LG RILR+++A Sbjct: 180 LTQWAAQSRERIDST----GIELLIGPEGGL-SPDEESLAEAAGYLPLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + AI G++ Sbjct: 235 ALVAISALHAILGEF 249 >gi|262372152|ref|ZP_06065431.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262312177|gb|EEY93262.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 239 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 15/239 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + + +H+ VLR K + + FNGK GE+ ++ + K Sbjct: 1 MNRFYIETELNTGNTIELTESVFHHWVRVLRAKVQEKAIFFNGKGGEYRVTLTEINKKNA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123 F + + + + I + K +R+DY IQK+ E+G+ I+ + + R Y+ Sbjct: 61 FVSVDHFEAIDRTAPFKVILGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120 Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D+ + + ++A EQC + +P + P ++E ++ + V A N Sbjct: 121 RDQKKLDHWQSVAVAACEQCGMNIVPKVLAPISIEEWIQTDLPISRFVMA------PNKD 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +K + P +A+LIGPEGG E + FV +G R+LR++TA V A++++ Sbjct: 175 QKNVLLDAQPELALLIGPEGGLSESEIRLSNQHGFVN-WCIGDRVLRTETAPVVALSIL 232 >gi|299138336|ref|ZP_07031515.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8] gi|298599582|gb|EFI55741.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8] Length = 235 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 18/230 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL--SKISYVGKSIRFKVEYQSRSQT 77 T +GDQ +LA VLR + G +F+ +L ++I+ V S ++ Sbjct: 14 TTASLTGDQAAHLARVLRAEPGQ---IFDVVANGFLHRAEITSVSDSEVVFTLHEELEAD 70 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTI 132 V + + K + +++ I+K+ E+G I PV+ R T Q ++R R Sbjct: 71 AALPVHLLLAVFKFDHMEWGIEKATELGAERITPVLARRTEKHLSQAAAKRVERWRRIVR 130 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA+Q +P + P TL+ L++ +++ A+ EN++ A +VA+ Sbjct: 131 EAAQQSRRSDVPTVDDPQTLKAALQSVSAETKLLLAE--TEQENTIAAALQQAS-QSVAL 187 Query: 193 LIGPEGGYHSEEKE--TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +GPEGG+ EE + T H VT LGPRILR++TAA+A +A+ A+ Sbjct: 188 AVGPEGGWTPEEMQLFTEHGWKHVT---LGPRILRAETAAIAGLAICSAL 234 >gi|121534804|ref|ZP_01666624.1| protein of unknown function DUF558 [Thermosinus carboxydivorans Nor1] gi|121306599|gb|EAX47521.1| protein of unknown function DUF558 [Thermosinus carboxydivorans Nor1] Length = 244 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 21/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKS 64 ++R F FP + ++ +GD H++A VLR+K GD I++ G+DG+ IS G S Sbjct: 1 MRRFF--FPGPLASEMIITGDDGHHIARVLRLKPGDYIIV-AGQDGQACKAEIISVDGSS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ Q+ +++ + V+ + K +++D++IQK+VE+G+ I P+ T YT Sbjct: 58 VKVACR-QALTESNEPPVEVWLAQGLPKGDKMDFIIQKAVELGVTRILPIETAYTVVRYD 116 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGS 174 +R + AA+QC +P + T LLK I+ CG Sbjct: 117 AGKKAARRERWQKIAYEAAKQCGRAAVPEVASVQTFSSLLKMTLPETVIMLYEGQPACGL 176 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + +L + +++ +LIGPEGG+ +E L +++GPRILR++ Sbjct: 177 KQALRMTPSESYL----LLIGPEGGFSPDEV-LLCRQRGAQIVTMGPRILRTE 224 >gi|218233104|ref|YP_002369120.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus B4264] gi|228960579|ref|ZP_04122227.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051300|ref|ZP_04194818.1| RNA methyltransferase, RsmE [Bacillus cereus AH676] gi|229111784|ref|ZP_04241331.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15] gi|229148158|ref|ZP_04276464.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24] gi|296504805|ref|YP_003666505.1| surface protein [Bacillus thuringiensis BMB171] gi|218161061|gb|ACK61053.1| RNA methyltransferase, RsmE family [Bacillus cereus B4264] gi|228635298|gb|EEK91822.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24] gi|228671658|gb|EEL26955.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15] gi|228722058|gb|EEL73485.1| RNA methyltransferase, RsmE [Bacillus cereus AH676] gi|228799092|gb|EEM46061.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325857|gb|ADH08785.1| surface protein [Bacillus thuringiensis BMB171] Length = 249 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-ACLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|238021924|ref|ZP_04602350.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147] gi|237866538|gb|EEP67580.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147] Length = 239 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 31/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R ++ PL T + ++ HVLR+ GDNI LFNG ++ + + +GK Sbjct: 1 MPRFYLPAPLAPHTTFSLPDNIVRHI-HVLRLNAGDNITLFNGTGSDFDATLQEIGKRHA 59 Query: 65 ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 I + + ++ S + VQ + S R+D+ +QKSVE+G+ AI+P+I+ Sbjct: 60 ECHITAQRQPENESALNITLVQAVSS---GERMDFTLQKSVELGVRAIQPMISERCVVRL 116 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + R + I+A EQ +P + P + L+ ++ Sbjct: 117 SGDRADKRVQRWQDIVIAACEQSGRSIVPTVLPIVSFSDYLRQMPPELHLMM-------- 168 Query: 176 NSLEKLHAIAHIPNVA----ILIGPEGGYH-SEEKETLHSLPFVTPLSLGPRILRSDTAA 230 SL + A+ I V+ ++IGPEGG+ +EE+ L + V ++LG R+LR++TAA Sbjct: 169 -SLRRAQALRDIAPVSQSLRLMIGPEGGWTPAEEQAALDA--GVQTITLGKRVLRTETAA 225 Query: 231 VAAMALVQAICGDW 244 +AAMA +Q + GD+ Sbjct: 226 MAAMAAMQVLWGDF 239 >gi|117923554|ref|YP_864171.1| hypothetical protein Mmc1_0238 [Magnetococcus sp. MC-1] gi|117607310|gb|ABK42765.1| 16S rRNA m(3)U-1498 methyltransferase [Magnetococcus sp. MC-1] Length = 248 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 8/246 (3%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S RL+ PLC + YL VLR+ EGD + LFNG+ G W + I+ Sbjct: 2 STTPRLYTPQPLCAGQPVTLDREAQRYLLKVLRLGEGDALYLFNGEGGAWSAHITQTSGP 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTH 121 ++ + ++ + ++ ++ +IQK VE+G+ + P+ + + Sbjct: 62 LQVTPQQFEPEPMAPLNLTLVQGLSRSGPMELVIQKGVELGLQQLIPLQSARSVARAKGE 121 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEK 180 + ++R + I AAEQC L P L + + +I+F ++ SL + Sbjct: 122 HKLERWQRIAIEAAEQCRRSRLLQFQPVCDWSQLAGSLPEQGPRILFWEDHRHHTPSLRQ 181 Query: 181 LHA-IAHIP-NVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + P + +LIGPEGG +EE +L F T SLGPR+LR++TAA+AA+ + Sbjct: 182 WAATLEQAPTQITLLIGPEGGLSAEEVTHATTNLGFQT-CSLGPRVLRTETAALAAITAL 240 Query: 238 QAICGD 243 QA+ GD Sbjct: 241 QALLGD 246 >gi|153812691|ref|ZP_01965359.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174] gi|149831207|gb|EDM86296.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 115/221 (52%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++++VLRMK+G+ + + +G E+ I ++ + + Y + Y Sbjct: 22 GTDVNHISNVLRMKQGEEVWISDGGQKEYRCAIEAFSADEVLLHIIYAQEPDYELPSRIY 81 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ +IQK+VE+G I PV T+ + ++R + SAA+Q Sbjct: 82 LFQGLPKADKMELIIQKAVELGAYEIIPVETKRCVVKLDGKKAAKKVERWQQIAESAAKQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 + +P ++ + + LK + + +++ + G + + E L AI ++ I IGP Sbjct: 142 SKRMLIPNVHQVLSFKEALKYAESMDIRLIPYELAKGMQETKEILAAIEQGQSIGIFIGP 201 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ +E E S P++LG RILR++TA +A ++++ Sbjct: 202 EGGFEEKEVEAAIS-EGAKPITLGKRILRTETAGLAILSVL 241 >gi|269469135|gb|EEZ80680.1| hypothetical protein Sup05_0073 [uncultured SUP05 cluster bacterium] Length = 238 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 39/237 (16%) Query: 27 DQY--HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 D+Y H+L VLR +G NI LFNG DG I+Y K I K + + TK+ ++ Sbjct: 21 DEYCSHHLIKVLRFPQGKNITLFNG-DG-----INYSAKVISSKKKCEVLILTKEQNLSE 74 Query: 84 ------YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----------TQNTHYNMDR 126 K ++D++IQK+VE+G+ I P+++ + + H+ Sbjct: 75 SKLNLTLAQGIAKGEKMDFLIQKAVELGVNKIVPIMSEHCVVKLKGEKLTKRQLHW---- 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + A EQ +P + P TL L N I+ T + L + H Sbjct: 131 -QKIVFGACEQSGRSIVPNVETPITLNDFLDQTTTNGFILHHRST-------QTLLELEH 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + ILIGPEGG +E E S + + L LG R+LR++TA++ A+A +Q + G Sbjct: 183 MNEATILIGPEGGLSEKEIEQATSSGYQSLL-LGSRVLRTETASLVAIANMQLLWGS 238 >gi|209760098|gb|ACI78361.1| hypothetical protein ECs3822 [Escherichia coli] Length = 252 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + K+ + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 71 VEVKL-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 129 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243 Query: 237 VQAICGD 243 +Q GD Sbjct: 244 LQVRFGD 250 >gi|206890400|ref|YP_002249400.1| hypothetical protein THEYE_A1605 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206890475|ref|YP_002249450.1| hypothetical protein THEYE_A1657 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742338|gb|ACI21395.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742413|gb|ACI21470.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 236 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 8/214 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S + YL +VLR GD + +FNGK + +KI + K+I E + ++ S + Sbjct: 22 SNEDRKYLFNVLRCHPGDTLSIFNGKGKSFHAKIIDL-KTIEILQEEELHTEDVFS-ITL 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTL 143 + +K ++D +IQK+ E+G+ I P ++ H + R A+EQ + Sbjct: 80 CQALLKGEKMDMIIQKATELGVKKIIPFVSDRCIVRHTRKIGRWEKIAKEASEQSHRSIV 139 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I L+KN D+ I+F ++ + ++ + + H N+ +LIGPEGG+ E Sbjct: 140 PEISNVINFSELIKNIDNG--ILFWEK--ATSPLIQTISEVNHDKNIFLLIGPEGGFSQE 195 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + T SLG RIL+++TA++ ++ALV Sbjct: 196 EVSQAEKMNIKTA-SLGKRILKAETASIVSVALV 228 >gi|320645839|gb|EFX14824.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H- str. 493-89] gi|320651139|gb|EFX19579.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H- str. H 2687] Length = 243 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + K+ + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKL-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|288933585|ref|YP_003437644.1| hypothetical protein Kvar_0702 [Klebsiella variicola At-22] gi|288888314|gb|ADC56632.1| protein of unknown function DUF558 [Klebsiella variicola At-22] Length = 243 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74 L I +Q S D +++ VLRM G ++ LF+G + + + I+ GK VE S Sbjct: 12 LTIGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70 Query: 75 SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126 ++S + + + ++++ IQKS+E+G+ I P+ + + + + Sbjct: 71 PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I+A EQ +P I P LE D ++ S N+L Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINTLP-----LP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|157377104|ref|YP_001475704.1| hypothetical protein Ssed_3972 [Shewanella sediminis HAW-EB3] gi|157319478|gb|ABV38576.1| protein of unknown function DUF558 [Shewanella sediminis HAW-EB3] Length = 243 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 32/230 (13%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYI 85 ++ VLRM G+ + LFNG E+L++I K +I V +S S Q I Sbjct: 27 HVGRVLRMSSGEQVSLFNGDGNEYLAQIESASKKNVQVTILSSVANESESPLHLHLGQVI 86 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCD 139 + +R+D+ IQKSVE+G+ I P+ + + + + + I A EQ Sbjct: 87 S---RGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGERLEKKIHQWQKIVIGACEQSG 143 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHI----PNVAIL 193 +P + P +LE W A++T + +L H I + P V +L Sbjct: 144 RSLVPQVRPAMSLE----AWS-------AEQTDSLKLNLHPRAAHGIGGLTLPEPRVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG E F T + LGPR+LR++TAA+ A++ +Q GD Sbjct: 193 IGPEGGLSETEILMTEQHAF-TDVLLGPRVLRTETAALTAISALQLKFGD 241 >gi|229845005|ref|ZP_04465142.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae 6P18H1] gi|229812139|gb|EEP47831.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae 6P18H1] Length = 245 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K K Sbjct: 5 RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 VE R K+S ++ + + R+++ IQKSVE+G+ I P+ +++ +D Sbjct: 64 VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120 Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 R I+A EQC ++P I P L+ +W C + Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164 Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 K LH AH IP V +LIG EGG ++E F T + LG R+L Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA+++A++ +Q GD Sbjct: 224 RTETASLSAISALQICFGD 242 >gi|152971897|ref|YP_001337006.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956746|gb|ABR78776.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 243 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 14/236 (5%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 12 LIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKNVTAEVLSGEP 71 Query: 76 QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRV 127 ++S + + + ++++ IQKS+E+G+ I P+ + + + + Sbjct: 72 DDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQW 131 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I+A EQ +P I P LE D ++ S N+L + Sbjct: 132 QKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINTLP-----LPV 186 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 187 ERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|186681306|ref|YP_001864502.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc punctiforme PCC 73102] gi|186463758|gb|ACC79559.1| protein of unknown function DUF558 [Nostoc punctiforme PCC 73102] Length = 249 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 29/256 (11%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S L+R+ + + Q + +Q HYL VLR++EGD + +GK WL++++ G+ Sbjct: 2 SQLQRIAIAPSQFQQGQILLTKEQQHYLGRVLRLREGDRFIAMDGKGKWWLAQLA--GEQ 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + ++ S + P K N D +++ E+G+ I PV++ T + Sbjct: 60 AQVLESLLVETELPVSITLMVALP-KGNGFDEVVRCCTELGVTCIAPVLSDRTLLDPSPQ 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPP----TTLEFLLKNWDHNCQIVFADE---TCGSE 175 ++R R AAEQ + +P I P T L ++ + + FA+ C + Sbjct: 119 KLERWRRIAAEAAEQSERSFVPTILEPVAFNTGLSLVIGH------LSFANSQQYICEAR 172 Query: 176 NSLEKL-HAIAHI---------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L H + H + I GPEGG+ ++E E + F P+SLG RILR Sbjct: 173 AEFPHLKHCLQHKGQMTSDKGQETIVIATGPEGGWTTQEIENAIASGF-QPVSLGRRILR 231 Query: 226 SDTAAVAAMALVQAIC 241 + TA V A++L+ A C Sbjct: 232 AVTAPVVALSLITASC 247 >gi|329998571|ref|ZP_08303168.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3] gi|328538642|gb|EGF64741.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3] Length = 243 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74 L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK VE S Sbjct: 12 LIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70 Query: 75 SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126 ++S + + + ++++ IQKS+E+G+ I P+ + + + + Sbjct: 71 PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I+A EQ +P I P LE D ++ S N+L Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINTLP-----LP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|291531082|emb|CBK96667.1| RNA methyltransferase, RsmE family [Eubacterium siraeum 70/3] Length = 257 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 18/225 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQY-IF 86 ++A VLRM++GD ++ + ++L ++S +I F + + + DV+ +F Sbjct: 39 KHIAQVLRMRKGDKAIICDKNGHDYLCELSSAENKSAIEFGI-LDKKDNLAEPDVEITLF 97 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCD 139 + K ++LD+++QK+ E+G I P +++ T++ + R++ A++QC Sbjct: 98 QAVPKNDKLDFIVQKATELGAMRIVPFLSKRCVSRPDTKSADKKVQRLQRIAYEASKQCG 157 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + P T + + + D + I+F + CG + L +L +A+ IG EG Sbjct: 158 RGKIPGVMPFTDFKSAVNSIDSDTLPIIFYE--CGGKK-LSELDL--SYKKIAVFIGSEG 212 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE + S T + LG RILR +TA VAA+A++ + G+ Sbjct: 213 GFEKEEVDYALS-KGATAVHLGERILRCETAPVAALAVLMNLTGN 256 >gi|229086882|ref|ZP_04219041.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44] gi|228696392|gb|EEL49218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44] Length = 249 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + GD H++A V+RM GD+I NGK + +I+ +V Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAMCTIDEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 STI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174 + ++R++ AAEQ +P ++ P + + LL + D++ C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPDVHAPASFKQLLAMSSDYDVCLVAYEEEAKQG 177 Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E N + L + H + I+ GPEGG +E L F+ P SLGPRILR++TA + Sbjct: 178 EKANFAKALTTLEHGQKLLIVFGPEGGLSEDEISALREYKFL-PCSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|262042596|ref|ZP_06015752.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040030|gb|EEW41145.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 243 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74 L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK VE S Sbjct: 12 LIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70 Query: 75 SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126 ++S + + + ++++ IQKS+E+G+ I P+ + + + + Sbjct: 71 PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I+A EQ +P I P LE D ++ S N+L Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLETWCAEQDSGLKLNLHPRASASINTLP-----LP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|238896476|ref|YP_002921214.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae NTUH-K2044] gi|238548796|dbj|BAH65147.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 268 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 23/251 (9%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 +IH H +RL V +Q S D +++ VLRM G ++ LF+G + + + I+ Sbjct: 30 RIH-HPERLIVG------SQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEA 82 Query: 62 GKSIRFKVEYQS-RSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY-- 116 GK VE S ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 83 GKK-NVTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCG 141 Query: 117 ----TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + + + + I+A EQ +P I P LE D ++ Sbjct: 142 VKLDAERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRAS 201 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S N+L + V +LIGPEGG +EE F T + LGPR+LR++T A+ Sbjct: 202 ASINTLP-----LPVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALT 255 Query: 233 AMALVQAICGD 243 A+ +Q GD Sbjct: 256 AITALQVRFGD 266 >gi|224005044|ref|XP_002296173.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209586205|gb|ACI64890.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 299 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 121/279 (43%), Gaps = 79/279 (28%) Query: 38 MKEGDNILLFNGKDGEWLSKISY------------VGKSIRFKVEYQS---------RSQ 76 + E D I +F+G++GEWL+++ +GK + K E S Q Sbjct: 18 LSEKDCIRVFDGRNGEWLARVRVSPQHQEDVNSIDMGKRTKRKREITSLMAECIVQLSLQ 77 Query: 77 TKQSDVQYI-FSPIKTN-RLDYMIQKSVEMGMGAIRPVITR----------------YTQ 118 T Q D ++ F P+K R+ MI+K E+G+G + PV++ Y Sbjct: 78 TCQDDAPWVLFVPLKKQPRMKLMIEKCTELGVGRMIPVVSDRSAWMVSSNNDDLDVLYGG 137 Query: 119 NTHYN--MDRVRTYTISAAEQCDILTLPFIYPPTTL--------------EFLLKNWDHN 162 N+ D++ I AAEQC+ L++P I +L E L++ W Sbjct: 138 NSDEENVFDKLELQAIEAAEQCERLSIPIITNEVSLGVQDDEANDRVWSVESLIEEWCRG 197 Query: 163 CQ--IVFADE----TC------GSENS-LEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + V AD+ C G+E L + A+ P VA L+GPEGG+ EE+ Sbjct: 198 WEERDVTADKRRLLVCRERGNDGTEGKVLPVIQALYDNPRVAFLVGPEGGWSPEEEAKFD 257 Query: 210 SLPF--------VTPLSLGPRILRSDTA---AVAAMALV 237 S V +SLG +LR++TA AV A ALV Sbjct: 258 STCTKYQGKDSPVQCISLGSSVLRAETACMMAVGAWALV 296 >gi|113869103|ref|YP_727592.1| 16S ribosomal RNA methyltransferase RsmE [Ralstonia eutropha H16] gi|113527879|emb|CAJ94224.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 250 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 47/239 (19%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT-- 91 VLR+ GD + LF+G+ G + + +GK + ++ D P + Sbjct: 31 QVLRLVPGDAMTLFDGRGGSHAATLVELGK-------RHALARIGAHDAAEAEPPFRVTL 83 Query: 92 -------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 +++D++I+K+VE+G+ AI+P V+ + H + +A EQC Sbjct: 84 AQGLAGGDKMDWLIEKAVELGVTAIQPLQASRSVVRLSGERAHKRHAHWQALVQAACEQC 143 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---------- 188 LP + P E W A G L A +P Sbjct: 144 GRNRLPEVAPVANFE----TW-------LAQSAAGGARLLVSPRATHSLPAFIAEQRESL 192 Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +LIGPEGG +E++ + F T +SLGPRILR++TA +A +A + A+ G + Sbjct: 193 LAGGVTLLIGPEGGLAPDEEQAARQVGF-TGVSLGPRILRTETAGLACLATLNALLGGF 250 >gi|228910148|ref|ZP_04073967.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200] gi|228849431|gb|EEM94266.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPDQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|206978414|ref|ZP_03239283.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97] gi|206743370|gb|EDZ54808.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVETSSELSVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|312110171|ref|YP_003988487.1| hypothetical protein GY4MC1_1064 [Geobacillus sp. Y4.1MC1] gi|311215272|gb|ADP73876.1| protein of unknown function DUF558 [Geobacillus sp. Y4.1MC1] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 13/223 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 GD YH++ HV+RM++G ++ L +I + + + +VE QT+ Sbjct: 19 QGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERVIVRVEEWINEQTELPVQI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K ++L+ +IQK E+G A R ++ + + ++R + AAE Sbjct: 79 YIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAKKANKKLERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAI 192 Q +P I+ P T++ L++ +FA E + + L AI H ++ Sbjct: 139 QSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNHRTLAAILRQMKHGQSLLA 198 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + GPEGG+ EE E L F + SLGPRILR++TA + +A Sbjct: 199 VFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLLA 240 >gi|219871131|ref|YP_002475506.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus parasuis SH0165] gi|219691335|gb|ACL32558.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 244 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L K+ S D ++++ VLRM EG ++LF+G + + + I V K Sbjct: 2 RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 I K++ S+ ++S + + + +R+++ IQKSVE+G+ I P+ +++ Sbjct: 62 ISVKIQ-NSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R ISA EQC +P I P L +W C Sbjct: 118 KLDGERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKL----TDW------------CQ 161 Query: 174 SENSLEKL-------HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 ++ + KL +++ +PN V +LIG EGG SEE + F T + LG Sbjct: 162 EQDGMLKLNLHPRAKYSLKSLPNIPKEGVRLLIGSEGGLSSEEIAMTEAENF-TEVLLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 RILR++TA++A + +Q + GD Sbjct: 221 RILRTETASLATITALQMLYGD 242 >gi|295399227|ref|ZP_06809209.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius C56-YS93] gi|294978693|gb|EFG54289.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius C56-YS93] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 13/223 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 GD YH++ HV+RM++G ++ L +I + + + +VE QT+ Sbjct: 19 QGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERVIVRVEEWINEQTELPIQI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K ++L+ +IQK E+G A R ++ + + ++R + AAE Sbjct: 79 YIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAKKANKKLERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAI 192 Q +P I+ P T++ L++ +FA E + + L AI H ++ Sbjct: 139 QSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNHRTLAAILRQMKHGQSLLA 198 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + GPEGG+ EE E L F + SLGPRILR++TA + +A Sbjct: 199 VFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLLA 240 >gi|260221803|emb|CBA30730.1| Ribosomal RNA small subunit methyltransferase E [Curvibacter putative symbiont of Hydra magnipapillata] Length = 241 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 28/212 (13%) Query: 34 HVLRMKEGDNILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--- 89 VLR++ GD+I LF+G+ E+ + ++ +G+S V+ R + + I + Sbjct: 27 QVLRLQPGDSITLFDGQSADEFDATVTRMGRS-DVAVQVGQRRTVAREPARQIHLAVGMP 85 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 +R+D++++K+ E+G+ +I+P++T + + + ++ ++A EQC + Sbjct: 86 ANDRMDWLVEKATELGVASIQPLMTERSVLKLSGERAEKKVAHWQSVAVAACEQCGGNMV 145 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA----IAHIPN----VAILIG 195 P ++P TL LK+ I + L L A +A +P+ V L G Sbjct: 146 PVVHPMQTLAQWLKSPSAQSDI--------PQRLLLSLRAGSTPVASLPSGPAPVWFLSG 197 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 PEGG S E+E + F +P SLGPR+LR++ Sbjct: 198 PEGGLSSHEEEAAIAARF-SPASLGPRVLRAE 228 >gi|206969964|ref|ZP_03230918.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134] gi|228954597|ref|ZP_04116621.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071816|ref|ZP_04205030.1| RNA methyltransferase, RsmE [Bacillus cereus F65185] gi|229081573|ref|ZP_04214070.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2] gi|229180588|ref|ZP_04307930.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W] gi|229192522|ref|ZP_04319484.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876] gi|206735652|gb|EDZ52820.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134] gi|228590946|gb|EEK48803.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876] gi|228603012|gb|EEK60491.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W] gi|228701729|gb|EEL54218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2] gi|228711295|gb|EEL63256.1| RNA methyltransferase, RsmE [Bacillus cereus F65185] gi|228805043|gb|EEM51638.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|315652517|ref|ZP_07905501.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485233|gb|EFU75631.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 245 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 115/224 (51%), Gaps = 19/224 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 SG +++ +VLRMK G+ +L+ D ++L KI + +V + +Q ++ Sbjct: 19 SGSDVNHIVNVLRMKIGEELLISVKGDWDYLCKIEEIEND---RVNLKLLESMEQRELPI 75 Query: 85 IFSPI----KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 + + K+++++ +IQK++E+G+ I PV T + T ++R SA Sbjct: 76 KLTLLQGIPKSDKIEMIIQKAIELGVSEIIPVKTNRVVVRIDKKKTQAKVNRWNAIAQSA 135 Query: 135 AEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A+Q +P + P TL+ L+ D+ +++ + G + + + L+++ N+A+ Sbjct: 136 AKQSKRSIIPKVLNPQTLDNALEIVKDYGVKLLPYENADGIKKTKDILNSLNSKNNIAVF 195 Query: 194 IGPEGGYHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ E K T +T LG RILR++TA +A ++ Sbjct: 196 IGPEGGFEEAEVKKSTDSGFEVIT---LGKRILRTETAGLALLS 236 >gi|228923064|ref|ZP_04086356.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836562|gb|EEM81911.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 249 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|260582598|ref|ZP_05850388.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae NT127] gi|260094409|gb|EEW78307.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae NT127] Length = 245 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+ + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDDSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S+++ + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC ++P I P L+ +W C Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161 Query: 174 SENSLEKL--HAIAH--------IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + KL H AH IP+ V +LIG EGG ++E F T + LG Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPSIPSEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA+ +Q GD Sbjct: 221 RVLRTETASLAAITALQICFGD 242 >gi|253998192|ref|YP_003050255.1| hypothetical protein Msip34_0480 [Methylovorus sp. SIP3-4] gi|253984871|gb|ACT49728.1| protein of unknown function DUF558 [Methylovorus sp. SIP3-4] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 13/244 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F D PL + ++ VLR++ GD + LFNG ++ ++I + K+ Sbjct: 5 RFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDTLRLFNGDGHDYSAEIETIRKNEVIV 64 Query: 69 VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124 Q+ + + +S ++ + +R+D+ IQKSVE+G+ AI+P+ + + + + Sbjct: 65 KTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHAIQPISCQRSVVKLSGDRA 124 Query: 125 DRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D+ R + ISA EQ LP + T+L L + + D + L+ Sbjct: 125 DKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQD 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L I P + +LIGPEGG SEE S F T + LGPRILR++TAA+AA+A + Sbjct: 183 L-PIPQGP-ICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINTA 239 Query: 241 CGDW 244 GD+ Sbjct: 240 WGDF 243 >gi|253997349|ref|YP_003049413.1| hypothetical protein Mmol_1984 [Methylotenera mobilis JLW8] gi|253984028|gb|ACT48886.1| protein of unknown function DUF558 [Methylotenera mobilis JLW8] Length = 244 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 22/249 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---- 64 R + PL + S + LR+ GD+ +LFNG + ++ + K+ Sbjct: 5 RFYTHSPLALGASVLLSESAAAHATRALRLSVGDDAILFNGDGVNYNCTLTEIKKNSVTA 64 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + S + VQ I S +R+D+ IQK+VE+G+ +I+P+ ++ + Sbjct: 65 MVNGATAVHNESPLNITLVQAISS---GDRMDFTIQKAVELGVKSIQPISSKRSVVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSE 175 + + + ISA EQ +P + P +LE L N +N +I+ Sbjct: 122 ERAEKRTEHWQNIAISACEQSGRAYVPKVLTPISLEQWLGNNPAANNTRILLNPIGAVRL 181 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N + K + +LIG EGG EE + + F + + LGPRILR++TAA+ A+A Sbjct: 182 NEIAKPTG-----EIQLLIGAEGGLSQEEIDLATAHNFQS-IVLGPRILRTETAALTAIA 235 Query: 236 LVQAICGDW 244 +Q GD+ Sbjct: 236 AMQLAWGDF 244 >gi|313669146|ref|YP_004049430.1| hypothetical protein NLA_18700 [Neisseria lactamica ST-640] gi|313006608|emb|CBN88073.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 241 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQS-DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R + E ++ + T+ ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEETADTESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+ Sbjct: 86 GERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVS 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRACKLSDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 199 EQEEQYAFDAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240 >gi|206576729|ref|YP_002236603.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella pneumoniae 342] gi|290511348|ref|ZP_06550717.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp. 1_1_55] gi|206565787|gb|ACI07563.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella pneumoniae 342] gi|289776341|gb|EFD84340.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp. 1_1_55] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74 L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK VE S Sbjct: 12 LTVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70 Query: 75 SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126 ++S + + + ++++ IQKS+E+G+ I P+ + + + + Sbjct: 71 PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I+A EQ +P I P LE D ++ S N+L Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINTLP-----LP 185 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|238763255|ref|ZP_04624220.1| Ribosomal RNA small subunit methyltransferase E [Yersinia kristensenii ATCC 33638] gi|238698528|gb|EEP91280.1| Ribosomal RNA small subunit methyltransferase E [Yersinia kristensenii ATCC 33638] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ +++ Sbjct: 62 LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPL---FSERCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC +P I L + ++ S Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLADWCAEQGDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----SSLSKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|33152802|ref|NP_874155.1| hypothetical protein HD1793 [Haemophilus ducreyi 35000HP] gi|33149026|gb|AAP96544.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 19/249 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 + R++ PL +T S D +++ VLRM G+ I+LF+G + + + + V K Sbjct: 2 RIPRIYHPEPLKNQTSCSLSEDATNHIGRVLRMNVGEKIILFDGSNHIFHAVLETVQKKQ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRY 116 I+ K+ S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IQVKI-LHSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKIITPLWSERCGVKLN 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC+ +P I P L K D ++ Sbjct: 121 DERQDKKLQQWQKIAIAACEQCERNQVPQIRPIMKLTDWCKEQDEMLKLNL------HPR 174 Query: 177 SLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + + IP V +LIG EGG +EE + F T + LG R+LR++TA++AA+ Sbjct: 175 AKYTIRQLPQIPTAGVRLLIGSEGGLSAEEIAMTENQGF-TEVLLGKRVLRTETASLAAI 233 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 234 TALQVCFGD 242 >gi|302391394|ref|YP_003827214.1| hypothetical protein Acear_0607 [Acetohalobium arabaticum DSM 5501] gi|302203471|gb|ADL12149.1| protein of unknown function DUF558 [Acetohalobium arabaticum DSM 5501] Length = 248 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI---RF 67 FV+ + Q + +GD ++ LR+ GD I + +GK ++ +I+ G + Sbjct: 5 FVEPDYITEGQVRITGDDVKHITKSLRLGPGDEISVADGKGRRYMVEIAETGNGLVLGNI 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 K E++S+ + + +V + K+ ++D +++K E+G+ + P T+ + Sbjct: 65 KEEFRSKVEP-EVEVTLLQGLPKSRKMDLIVEKCTELGIDKVIPAETKRSVVKLKPSKAK 123 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 R + +AA+Q +P + L L + I+ E + + E L Sbjct: 124 RRRKRWQRKAEAAAKQSKRARIPAVGQLMNLTDLSEIATDYDLILLPWEEESTSSVKEVL 183 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + A I V I+IGPEGG+ +EE ET L +SLGPRILR++TA + ++LV Sbjct: 184 GSAAAIEKVLIIIGPEGGFTAEEVETAKQLG-AKSVSLGPRILRTETAGLTTLSLVLYEL 242 Query: 242 GD 243 GD Sbjct: 243 GD 244 >gi|229593532|ref|YP_001455814.2| 16S ribosomal RNA methyltransferase RsmE [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ P+ +Q D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VDVKV-LSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|212637179|ref|YP_002313704.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella piezotolerans WP3] gi|212558663|gb|ACJ31117.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 261 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 38/233 (16%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ VLRM G+ + LFNG +L++I S K++ KV S +S + + Sbjct: 45 HVGRVLRMAAGEQVCLFNGDGNNYLAEILSASKKNVAVKV-LSCESNDSESPLHLHLGQV 103 Query: 90 --KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 + +R+D+ IQKSVE+G+ I P+ + + + + + +SA EQ Sbjct: 104 ISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGERLEKKIQQWQKIVVSACEQSGRS 163 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAH-------IPN--V 190 +P I P L +W C E S K LH A +PN V Sbjct: 164 VVPVIRPA----MQLSDW------------CAEETSSLKINLHPRASHGVNGLCLPNNRV 207 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 ++IGPEGG + E + F T + LGPR+LR++TAA+ + +Q GD Sbjct: 208 RLVIGPEGGLSATEITMTETHKF-TDVLLGPRVLRTETAALTTITALQLKFGD 259 >gi|157085700|gb|ABV15378.1| hypothetical protein CKO_04321 [Citrobacter koseri ATCC BAA-895] Length = 254 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ P+ +Q D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 13 RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 72 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 73 VDVKV-LSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 131 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + I+A EQC +P I P LE D ++ S N Sbjct: 132 SERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASIN 191 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 192 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 245 Query: 237 VQAICGD 243 +Q GD Sbjct: 246 LQVRFGD 252 >gi|240949405|ref|ZP_04753746.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305] gi|240296154|gb|EER46810.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 37/258 (14%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL KT S D +++ VLRM G+ I+LF+G + + + + V K Sbjct: 2 RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQIILFDGSNHVFHATLQAVEKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117 S ++S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKVITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L +W C ++ Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMK----LTDW------------CKEQDD 165 Query: 178 LEKL-------HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + KL + I +PN V +LIG EGG EE F T + LG R+LR Sbjct: 166 MLKLNLHPRAKYTIRQLPNMPVAGVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLR 224 Query: 226 SDTAAVAAMALVQAICGD 243 ++TA++AA+ +Q GD Sbjct: 225 TETASLAAITALQVCFGD 242 >gi|238752316|ref|ZP_04613795.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei ATCC 43380] gi|238709477|gb|EEQ01716.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei ATCC 43380] Length = 232 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM EG ++ LF+G + + ++I K + + +S + Sbjct: 10 SDDAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIKADKKNLIVRLAEGQIADCESPLNL 69 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTIS 133 + + ++++ +QKS+E+G+ I P+ +++ +D R I+ Sbjct: 70 HLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVKLDGERLAKKIQQWQKIAIA 126 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I L D + ++ S N+L A + V +L Sbjct: 127 ACEQCGRNTIPEIRAAMQLTDWCAEQDDSLKLNLHPRASNSINTLP-----ASLNKVRLL 181 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG ++E L F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 182 IGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITALQVRFGD 230 >gi|15640496|ref|NP_230123.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153823176|ref|ZP_01975843.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229509057|ref|ZP_04398545.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae B33] gi|229519725|ref|ZP_04409168.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC9] gi|229606238|ref|YP_002876886.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae MJ-1236] gi|254850701|ref|ZP_05240051.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744284|ref|ZP_05418237.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera CIRS 101] gi|9654895|gb|AAF93642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519302|gb|EAZ76525.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229344414|gb|EEO09389.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC9] gi|229353982|gb|EEO18916.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae B33] gi|229368893|gb|ACQ59316.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae MJ-1236] gi|254846406|gb|EET24820.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738224|gb|EET93616.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera CIRS 101] Length = 243 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+A +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQVRFGD 241 >gi|261867348|ref|YP_003255270.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412680|gb|ACX82051.1| hypothetical protein D11S_0649 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 244 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T S D +++ VLRM+ GD + LF+G + + + I+ V K Sbjct: 2 RVPRIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVAKK- 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 +V+ SR ++S + + + R+++ IQKSVE+G+ I P+ +++ Sbjct: 61 SVEVDILSRQFDDRESPLAIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P I P L+ W C Sbjct: 118 KLDGERMDKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQ----QW------------CA 161 Query: 174 SENSLEKLH----------AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 N KL+ + IP V +LIG EGG +E FV L LG Sbjct: 162 EPNDALKLNLHPRARYSIRTLPEIPAAGVRLLIGSEGGLSPQEIAQTEQQGFVDVL-LGK 220 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TAA+AA+ +Q GD Sbjct: 221 RVLRTETAAMAAITALQVCFGD 242 >gi|324328215|gb|ADY23475.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 249 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIH 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN---CQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL + H C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLL-SMSHEYDVCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|295109582|emb|CBL23535.1| RNA methyltransferase, RsmE family [Ruminococcus obeum A2-162] Length = 247 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++++VLRMK+G+ + + +G E+ I + + + Y + Y Sbjct: 22 GSDVNHISNVLRMKQGEELWISDGGKKEYRCTIEDFSSDEVLLHIIYAQEPDYELPSRIY 81 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ +IQK+VE+G + PV T+ + ++R + SAA+Q Sbjct: 82 LFQGLPKADKMELIIQKAVELGAYEVIPVETKRCVVKLDGKKAAKKVERWKQIAESAAKQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 + +P ++ T + LK + + +++ + G + + E L I +V I IGP Sbjct: 142 SKRMLIPNVHEVLTFKEALKYAEAMDIRLIPYELAKGMQETKEILADIQPGQSVGIFIGP 201 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ +E ET S P++LG RILR++TA +A ++++ Sbjct: 202 EGGFEEKEVETAIS-EGAKPITLGKRILRTETAGLAILSVL 241 >gi|217961801|ref|YP_002340371.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus AH187] gi|228987562|ref|ZP_04147680.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141049|ref|ZP_04269591.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26] gi|217064535|gb|ACJ78785.1| RNA methyltransferase, RsmE family [Bacillus cereus AH187] gi|228642327|gb|EEK98616.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26] gi|228772160|gb|EEM20608.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 249 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|42783438|ref|NP_980685.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus ATCC 10987] gi|42739367|gb|AAS43293.1| conserved hypothetical protein TIGR00046 [Bacillus cereus ATCC 10987] Length = 249 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|293394489|ref|ZP_06638785.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582] gi|291422954|gb|EFE96187.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582] Length = 243 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 22/241 (9%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQS 73 PL T+ S D +++ VLRM G + LF+G + + ++I+ V K S++ ++ Sbjct: 11 PLRSDTEIVLSEDAANHVGRVLRMSPGQLLQLFDGSNQVFDAEITRVDKKSVQVQIGA-G 69 Query: 74 RSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR--- 128 R + ++S + + + ++++ IQKS+E+G+ I P+ +++ +D R Sbjct: 70 RQEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNTITPL---FSERCGVKLDGERLAK 126 Query: 129 ------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 I+A EQC + I P LE D + ++ S N+L Sbjct: 127 KLQQWQKIAIAACEQCGRNRIADIRPAMPLEAWCAEQDDSLKLNLHPRASHSINTLA--- 183 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + +V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ +Q G Sbjct: 184 --LPVNHVRLLIGPEGGLSADEIAMTSAHGF-TDILLGPRVLRTETTALTAITALQVRFG 240 Query: 243 D 243 D Sbjct: 241 D 241 >gi|167009794|ref|ZP_02274725.1| hypothetical protein Ftulh_03505 [Francisella tularensis subsp. holarctica FSC200] Length = 212 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 14/213 (6%) Query: 35 VLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPI-KT 91 +LR+K+ D I LFN D ++ +KI + K+I +V + + + + ++ I K+ Sbjct: 1 MLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYITNLYQAIIKS 60 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPF 145 + +IQK+ ++G+ I P+IT +T + ++R I+ +EQC + +P Sbjct: 61 ENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPK 120 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 I+ P + L+ ++ +V T ++ ++K+ + N I IGPEGG+ +E Sbjct: 121 IHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIGPEGGFSDKEM 176 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 HS F T ++LG RIL+++TA + ++++ Sbjct: 177 SKFHSNNFYT-INLGKRILKAETAPINILSIIN 208 >gi|229157925|ref|ZP_04285998.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342] gi|228625533|gb|EEK82287.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342] Length = 249 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|153828383|ref|ZP_01981050.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148876092|gb|EDL74227.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 243 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 20/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 S D ++ VLRM+ G +LLF+G E+ + IS VGK +I +VE S Sbjct: 21 SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133 Q I + +++++ IQKSVE+G+ I P+++ + + + + IS Sbjct: 81 HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC T+P I P LE ++ S N+L + V +L Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +EE + F L LGPR+LR++TAA+ A+A +Q GD Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQVRFGD 241 >gi|167855789|ref|ZP_02478542.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755] gi|167853068|gb|EDS24329.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755] Length = 244 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 25/252 (9%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L K+ S D ++++ VLRM EG ++LF+G + + + I V K Sbjct: 2 RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 I K++ S+ ++S + + + +R+++ IQKSVE+G+ I P+ +++ Sbjct: 62 ISVKIQ-NSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPL---WSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R ISA EQC +P I P L K D ++ Sbjct: 118 KLDGERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKLTDWCKEQDGMLKLNLHPRAKY 177 Query: 174 SENSLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 S L ++ ++P V +LIG EGG EE + F T + LG RILR++TA++ Sbjct: 178 S------LKSLLNVPQEGVRLLIGSEGGLSPEEIAMTEAENF-TEVLLGKRILRTETASL 230 Query: 232 AAMALVQAICGD 243 A + ++Q + GD Sbjct: 231 ATITVLQMLYGD 242 >gi|328957459|ref|YP_004374845.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp. 17-4] gi|328673783|gb|AEB29829.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp. 17-4] Length = 253 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 15/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK-VEYQSRSQTKQSDV 82 SGD +H++ V+RMK + L ++++I+ + K ++ VE R Q +V Sbjct: 21 SGDAFHHMVKVMRMKVDHRVYLVTKGQKAFIARINAIEEKEVQLNWVEDDLRQQELPIEV 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAE 136 K ++LD +IQK E+G A P IT++ T+ ++R++ AAE Sbjct: 81 TIASGLPKGDKLDLIIQKGTELGASAFIPFAGSFSITKWDTKKAVKKIERLQKIAQEAAE 140 Query: 137 QCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSE--NSLEKLHAIAHIPNVA 191 Q +P I ++++ L++ N+D C + + + E N ++ L + + Sbjct: 141 QSHRTKIPTIESLSSVKQLVEMKGNFD-VCLVAYEESAKAGEDQNFVKGLKQVPVGGKLL 199 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 I+ GPEGG EE + F+ P +LGPRILR++TA + A+A Sbjct: 200 IIFGPEGGLSKEEVDAFLQNGFL-PCALGPRILRTETAPLYALA 242 >gi|22127196|ref|NP_670619.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis KIM 10] gi|45443246|ref|NP_994785.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis biovar Microtus str. 91001] gi|51597516|ref|YP_071707.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis IP 32953] gi|108806328|ref|YP_650244.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Antiqua] gi|108813291|ref|YP_649058.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Nepal516] gi|145597888|ref|YP_001161964.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Pestoides F] gi|149367057|ref|ZP_01889090.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125] gi|153949952|ref|YP_001399821.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis IP 31758] gi|162418368|ref|YP_001607686.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Angola] gi|165924866|ref|ZP_02220698.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165937327|ref|ZP_02225891.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. IP275] gi|166010231|ref|ZP_02231129.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166212766|ref|ZP_02238801.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. B42003004] gi|167399760|ref|ZP_02305278.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421908|ref|ZP_02313661.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426701|ref|ZP_02318454.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470902|ref|ZP_02335606.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis FV-1] gi|170023088|ref|YP_001719593.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis YPIII] gi|186896639|ref|YP_001873751.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis PB1/+] gi|218928106|ref|YP_002345981.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis CO92] gi|229837626|ref|ZP_04457788.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A] gi|229840853|ref|ZP_04461012.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842587|ref|ZP_04462742.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis str. India 195] gi|229903754|ref|ZP_04518867.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516] gi|270487532|ref|ZP_06204606.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27] gi|294502903|ref|YP_003566965.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003] gi|21960262|gb|AAM86870.1|AE013933_7 hypothetical protein y3320 [Yersinia pestis KIM 10] gi|45438114|gb|AAS63662.1| conserved hypothetical protein [Yersinia pestis biovar Microtus str. 91001] gi|51590798|emb|CAH22444.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108776939|gb|ABG19458.1| hypothetical protein YPN_3131 [Yersinia pestis Nepal516] gi|108778241|gb|ABG12299.1| hypothetical protein YPA_0331 [Yersinia pestis Antiqua] gi|115346717|emb|CAL19600.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209584|gb|ABP38991.1| hypothetical protein YPDSF_0581 [Yersinia pestis Pestoides F] gi|149290671|gb|EDM40747.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125] gi|152961447|gb|ABS48908.1| ribosomal small subunit methyltransferase RsmE [Yersinia pseudotuberculosis IP 31758] gi|162351183|gb|ABX85131.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis Angola] gi|165914801|gb|EDR33414.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. IP275] gi|165923066|gb|EDR40217.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165990717|gb|EDR43018.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166206058|gb|EDR50538.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. B42003004] gi|166960045|gb|EDR56066.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050468|gb|EDR61876.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054304|gb|EDR64123.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749622|gb|ACA67140.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis YPIII] gi|186699665|gb|ACC90294.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis PB1/+] gi|229679524|gb|EEO75627.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516] gi|229690897|gb|EEO82951.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis str. India 195] gi|229697219|gb|EEO87266.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704314|gb|EEO91325.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A] gi|262360938|gb|ACY57659.1| hypothetical protein YPD4_0750 [Yersinia pestis D106004] gi|262364878|gb|ACY61435.1| hypothetical protein YPD8_0745 [Yersinia pestis D182038] gi|270336036|gb|EFA46813.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27] gi|294353362|gb|ADE63703.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003] gi|320013984|gb|ADV97555.1| hypothetical protein YPC_0866 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 243 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 20/249 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ + + +++ VLRM EG ++ LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLQANTELALTDEAANHVGRVLRMTEGQSLQLFDGSNQIFDAEIIRADKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + ++S + + + ++++ +QKS+E+G+ I P+ ++ Sbjct: 62 LIVRLAEGQWEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSARCGVK 118 Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +D R I+A EQC T+P I L D + ++ S Sbjct: 119 LDGERLTKKIQQWQKIAIAACEQCGRNTIPEIRDAMQLADWCAESDDSLKLNLHPRASNS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ Sbjct: 179 INTLP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 233 TALQVRFGD 241 >gi|228993054|ref|ZP_04152977.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442] gi|228766702|gb|EEM15342.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442] Length = 249 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + GD H++ V+RM GD+I NGK +++I+ +V Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIVRVMRMSVGDHIYCCVNGKTAMCTIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 SAI---VEWGEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174 + ++R++ AAEQ +P ++ P + + LL + D++ C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQG 177 Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E N + L A+ + ++ GPEGG EE L F+ P SLGPRILR++TA + Sbjct: 178 EKANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|297517146|ref|ZP_06935532.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli OP50] Length = 236 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 16/242 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K S Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + KV + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKV-LEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ + + + + I+A EQC +P I P LE D ++ S N Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQ 238 +Q Sbjct: 235 LQ 236 >gi|78186115|ref|YP_374158.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium luteolum DSM 273] gi|78166017|gb|ABB23115.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 247 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 19/223 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 GD++H+L+ VLR KEG++I + +G I+ VGK S+ ++ +S + + V Sbjct: 22 GDEFHHLSRVLRKKEGEHIRVTDGSGLSLEVLITSVGKRSLEGEILARSVVERPATGVTV 81 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 S +K R D+ ++K+ E+G+ + P++T+ T + M+R R +SAA Q Sbjct: 82 AISLLKAPARFDFFLEKATELGVSGVIPMMTQRTVSQPPRERFKGRMERWRNIMLSAARQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILIG 195 LP ++ P + L ++ +++ E G L+ P V LIG Sbjct: 142 SGRFHLPVLHEPLSFREALGLKGYDLRLI-PYEGSGVVPELD-------FPGKKVLFLIG 193 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EGG+ E E F +S G ILR+++A + A+ALV+ Sbjct: 194 GEGGFTPGEVEAASETGF-REMSFGRSILRAESAGIFAVALVR 235 >gi|313200262|ref|YP_004038920.1| hypothetical protein MPQ_0502 [Methylovorus sp. MP688] gi|312439578|gb|ADQ83684.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 243 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 13/244 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F D PL + ++ VLR++ GD + LFNG ++ ++I + K+ Sbjct: 5 RFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDALRLFNGDGHDYSAEIETIRKNEVIV 64 Query: 69 VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124 Q+ + + +S ++ + +R+D+ IQKSVE+G+ I+P+ ++ + + + Sbjct: 65 KTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHTIQPISSQRSVVKLSGDRA 124 Query: 125 DRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D+ R + ISA EQ LP + T+L L + + D + L+ Sbjct: 125 DKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQD 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + P + +LIGPEGG SEE S F T + LGPRILR++TAA+AA+A + + Sbjct: 183 L-PLPQGP-ICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINTV 239 Query: 241 CGDW 244 GD+ Sbjct: 240 WGDF 243 >gi|119510272|ref|ZP_01629409.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414] gi|119465121|gb|EAW46021.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414] Length = 235 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 15/218 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYI 85 +Q HYL VLR++ GD + +GK WL+++ +S + +V +T+ S + + Sbjct: 24 EQQHYLRRVLRLRTGDRFIAMDGKGKWWLTQL----ESEQAQVLETLTVETELSVAITLM 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTL 143 + K N D +I+ S E+G+ I P+++ T + ++R R AAEQ + + Sbjct: 80 VALPKGNGFDDIIRYSTELGVTCIAPLLSDRTLLNPSPQKLERWRRIATEAAEQSERAFV 139 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAILIGPEGGYH 201 P I P + + N C L+++ IP + I GPEGG+ Sbjct: 140 PTILEPVSFMTAI-----NASQATHRYICEGRGDYPHLNSLVKTDIPEIIIATGPEGGWT 194 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 E E + F P+SLG RILR+ TA V A+ L+ A Sbjct: 195 EPEIENAIASGF-QPVSLGRRILRAVTAPVVALTLISA 231 >gi|313114748|ref|ZP_07800250.1| RNA methyltransferase, RsmE family [Faecalibacterium cf. prausnitzii KLE1255] gi|310622973|gb|EFQ06426.1| RNA methyltransferase, RsmE family [Faecalibacterium cf. prausnitzii KLE1255] Length = 247 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 27/237 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DVQ 83 G H+LA V+R + GD ++L +G E+ + I+ G + + F+VE S + S +V Sbjct: 19 GADAHHLARVMRARLGDTVILCDGNAVEYTATITGFGDECVEFRVEPGYPSAAEPSVEVT 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139 + K ++L+ +I+ VE+G I P +RY + +R + AA+QC Sbjct: 79 LLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKKEEQKNERYNRIAVEAAKQCG 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN--- 189 LP + P L N+ C+ ++F E G+ L L A A + Sbjct: 139 RGVLPDVALP------LANFGAVCRTFAQYDLVLFCYECGGA--PLRDLLAAAKPADDEK 190 Query: 190 --VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +AI+ G EGG+ +EE E T + LGPRILR +TA +A +A V + G+ Sbjct: 191 LKIAIVTGAEGGFAAEEAEMAAKAGART-VGLGPRILRCETAPLAVLASVMTLTGNL 246 >gi|296313945|ref|ZP_06863886.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC 43768] gi|296839486|gb|EFH23424.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC 43768] Length = 241 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 21/223 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90 +VLR++ +NI LF+GK ++++ + K R K E T ++ I S Sbjct: 27 NVLRVRPNENITLFDGKGKAHTAQLTVLEKR-RAKAEILHEDTTDNESPLNITLIQSISS 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 +R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P Sbjct: 86 GDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201 + P E L K + +++ S N KL I H P+ AI ++GPEGG+ Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +E++ F ++LG RILR++TAA+AA+A +Q + GD+ Sbjct: 199 EQEEQQAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 240 >gi|297736409|emb|CBI25132.3| unnamed protein product [Vitis vinifera] Length = 410 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 8/218 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSD 81 + GD++ ++ VLR+ D + LFNGK G I+ + ++ + F + QS Sbjct: 182 RVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSS 241 Query: 82 VQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 ++F+ +K R D++++K E+G ++ P++T + + N +DR++ ++AA+Q Sbjct: 242 RWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQ 301 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L + PPTT++ LL + + A + L + ++IGPE Sbjct: 302 CQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPE 359 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 G + +E + T + LGP LR +TA +A +A Sbjct: 360 GDFTEKELNMMRE-AGATAVGLGPHRLRVETATIALLA 396 >gi|226328796|ref|ZP_03804314.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198] gi|225201982|gb|EEG84336.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198] Length = 243 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 40/259 (15%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL TQ + +++ VLRM G + LF+G + + ++I Sbjct: 2 RIPRIYHPEPLTAGTQTVLGEEASNHVGRVLRMSSGQKLALFDGSNQVFDAEI------- 54 Query: 66 RFKVEYQSRSQTKQSDVQYI---FSPI---------KTNRLDYMIQKSVEMGMGAIRPVI 113 +E +S T Q +V + SP+ + ++++ IQKSVE+G+ I P+I Sbjct: 55 ---IESTKKSVTVQVNVGIVDDKESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLI 111 Query: 114 TRYT---------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ 164 + + H ++ ISA EQC ++P + P +LE D + + Sbjct: 112 SERCGVKLDPSRLEKKHQQWQKI---IISACEQCGRNSIPQLMPVMSLEEWCAQDDGSLK 168 Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 + N+L + V +LIGPEGG EE F T + LGPR+L Sbjct: 169 LNLHPRANQRINTLP-----LPVKKVRLLIGPEGGLSPEEIAMTAEHNF-TDILLGPRVL 222 Query: 225 RSDTAAVAAMALVQAICGD 243 R++T A+ A+ +Q GD Sbjct: 223 RTETTALTAITALQVRFGD 241 >gi|167750969|ref|ZP_02423096.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702] gi|167656148|gb|EDS00278.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702] Length = 257 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 117/225 (52%), Gaps = 18/225 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQY-IF 86 ++A VLRM++GD ++ + ++L ++S + +I F + + + DV+ +F Sbjct: 39 KHIAQVLRMRKGDKAIICDKNGHDYLCELSSLENKNAIEFGI-LDKKDNLAEPDVEITLF 97 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCD 139 + K ++LD+++QK+ E+G I P +++ ++ + R++ A++QC Sbjct: 98 QAVPKNDKLDFIVQKATELGAVRIVPFLSKRCVSRPDAKSADKKVQRLQRIAYEASKQCG 157 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + P T + + + D + I+F + CG + L +L +A+ IG EG Sbjct: 158 RGKIPGVMPFTDFKSAVNSIDSDTLPIIFYE--CGGKK-LSELDL--SYKKIAVFIGSEG 212 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE + S T + LG RILR +TA VAA+A++ + G+ Sbjct: 213 GFEKEEVDYALS-KGATAVHLGERILRCETAPVAALAVLMNLTGN 256 >gi|225429203|ref|XP_002271957.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 287 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 8/218 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSD 81 + GD++ ++ VLR+ D + LFNGK G I+ + ++ + F + QS Sbjct: 59 RVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSS 118 Query: 82 VQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 ++F+ +K R D++++K E+G ++ P++T + + N +DR++ ++AA+Q Sbjct: 119 RWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQ 178 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L + PPTT++ LL + + A + L + ++IGPE Sbjct: 179 CQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPE 236 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 G + +E + T + LGP LR +TA +A +A Sbjct: 237 GDFTEKELNMMRE-AGATAVGLGPHRLRVETATIALLA 273 >gi|291557449|emb|CBL34566.1| RNA methyltransferase, RsmE family [Eubacterium siraeum V10Sc8a] Length = 257 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 117/224 (52%), Gaps = 18/224 (8%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIRFKVEYQSRSQTKQSDVQY-IFS 87 ++A VLRM++GD ++ + ++L ++S S+ F + + + + D++ ++ Sbjct: 40 HIAQVLRMRKGDKAIICDKNGHDYLCELSSADNKNSVEFAI-LDKKDNSAEPDIEITLYQ 98 Query: 88 PI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDI 140 I K ++LD+++QK+ E+G I P +++ ++ + R++ A++QC Sbjct: 99 AIPKNDKLDFIVQKATELGAVRIVPFMSKRCVSRPDAKSADKKVQRLQRIAYEASKQCGR 158 Query: 141 LTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P + P T + + + D + I+F + CG + L +L +A+ IG EGG Sbjct: 159 GKIPGVMPFTDFKSAVNSIDSDTLPIIFYE--CGGKK-LSELDL--SYKKIAVFIGSEGG 213 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + EE + S T + LG RILR +TA VAA+A++ + G+ Sbjct: 214 FEKEEVDYALS-KGATAVHLGERILRCETAPVAALAVLMNLTGN 256 >gi|312135345|ref|YP_004002683.1| hypothetical protein Calow_1326 [Caldicellulosiruptor owensensis OL] gi|311775396|gb|ADQ04883.1| protein of unknown function DUF558 [Caldicellulosiruptor owensensis OL] Length = 243 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + +++ VLR +EGD I L +G + ++ S+I V K + K+ +S++ + + IF Sbjct: 22 EDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKD-KIKLLIESKTLNDRESTKNIF 79 Query: 87 ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138 IK ++D+++QK+ E+G+ I PV+++ ++ +DR R A +QC Sbjct: 80 LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISEKEEKKLDRWRKIAQEAQKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I P + + + + I+F SE S L + + N+ ILIGPEG Sbjct: 140 LRPIPPLIEVPIRISEIKEKYLDKLDILFIPYEKESETSRWSLPS--NYNNIGILIGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE E L + V +SLG RILRS+TA++AA++++ G+ Sbjct: 198 GFEEEEVEELKTFKNVQVISLGKRILRSETASIAALSILMHELGE 242 >gi|209521966|ref|ZP_03270631.1| protein of unknown function DUF558 [Burkholderia sp. H160] gi|209497600|gb|EDZ97790.1| protein of unknown function DUF558 [Burkholderia sp. H160] Length = 232 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 45/237 (18%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDVQYIFSPIKTN 92 VLR++ GD+++LFNG+ GE+ +++ V + S R K+ ++++ + + Sbjct: 14 VLRLQPGDSLVLFNGQGGEYGAELVEVERRSARVKIRDFRAVEVEPPYRLTLAQGIAGGD 73 Query: 93 RLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 ++D++I+K+VE+G + +R V+ + + ++ EQC LP + Sbjct: 74 KMDWLIEKAVELGASGFVPLATVRSVVRLTGERAQRRQQHWQGVVRASCEQCGRNRLPEV 133 Query: 147 YP----------------PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-- 188 P P L LL I FA A+ P Sbjct: 134 MPVQDFGAWLDTLSREPAPDELRLLLS---PRASISFA--------------ALPDAPPR 176 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +LIGPEGG ++E+ + F T L LGPR+LR++TA +A +A + A G W Sbjct: 177 GRVTLLIGPEGGLSADEEAAAVAQGF-TALGLGPRVLRTETAGIAVLAALSARWGGW 232 >gi|254467996|ref|ZP_05081402.1| conserved hypothetical protein TIGR00046 [beta proteobacterium KB13] gi|207086806|gb|EDZ64089.1| conserved hypothetical protein TIGR00046 [beta proteobacterium KB13] Length = 247 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 115/229 (50%), Gaps = 11/229 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DV 82 S D +L LR+K D I+LFNG ++ ++S + K+++ V + + ++ D+ Sbjct: 20 SEDASKHLVKSLRLKPSDKIILFNGDGFDYHGEVSDIDKKNVKIAVNEKKHNASEAVIDI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136 + S ++LD++ QK+ E+G+ + T ++ ++ ISA E Sbjct: 80 SILQSVTSRDKLDFIFQKNTELGIKNFYLINTERVNFKIPQSKIENRIEHLKKVVISACE 139 Query: 137 QCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P ++ L L DH+C+++ T S ++L + + + + ILIG Sbjct: 140 QSGRSKIPTVHETILGLNKLTNEDDHSCKLILNPYTDYSLSNLRN-NDLINKKSFQILIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 PEGG+ E + + F + LSLG R+LR++TA+++ + + A+ ++ Sbjct: 199 PEGGFSEAEIKVAENAGFKS-LSLGKRVLRTETASLSIASAILALTNNF 246 >gi|251793469|ref|YP_003008198.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter aphrophilus NJ8700] gi|247534865|gb|ACS98111.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700] Length = 244 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 19/230 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80 S D +++ VLRM G+++ LF+G + + + I+ VGK S+ ++ ++ R Sbjct: 21 SEDGANHVGRVLRMLPGEHLELFDGTNHIYQAVITQVGKKSVDVEILSQQFDDRESPLSI 80 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTIS 133 + + S + R+++ IQKSVE+G+ I P+ + + DR+ + I+ Sbjct: 81 HLGQVIS--RGERMEFTIQKSVELGVNVITPLWSERC-GVKLDSDRMEKKIQQWQKIAIA 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQC +P I P L+ D ++ S +L + A V +L Sbjct: 138 ACEQCGRNKIPEIRPLMKLQQWCAEQDDTLKLNLHPRATHSIRTLPAIPA----AGVRLL 193 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IG EGG +E FV L LG R+LR++TAA+AA+ +Q GD Sbjct: 194 IGSEGGLSPQEIAQTEQQGFVEVL-LGKRVLRTETAAMAAITALQVCFGD 242 >gi|229198439|ref|ZP_04325143.1| RNA methyltransferase, RsmE [Bacillus cereus m1293] gi|228584942|gb|EEK43056.1| RNA methyltransferase, RsmE [Bacillus cereus m1293] Length = 249 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIH 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|254422571|ref|ZP_05036289.1| conserved hypothetical protein TIGR00046, putative [Synechococcus sp. PCC 7335] gi|196190060|gb|EDX85024.1| conserved hypothetical protein TIGR00046, putative [Synechococcus sp. PCC 7335] Length = 247 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 35/236 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 + +Q HYL VLR+ GD + +G+ +WL +S +V+ S Q +D+ Sbjct: 20 TSEQIHYLRRVLRLNSGDRFIAQDGRGKQWLVMLSD-------QVDQASIEQVISADLSA 72 Query: 85 I---FSPI-------KTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTI 132 + P+ K N D +++++ E+G+ I P+++ T + + R Sbjct: 73 VGPATGPLRLAAALPKGNSFDQVVRQATELGVTHIYPLMSDRTLLNPSASRLTRWHRIAQ 132 Query: 133 SAAEQCDILTLPFIYPPTTL-EFLLK-NWDHNCQIVFADETCGS-ENSLEKLHAIAH--- 186 A+EQC+ T P I+ PTTL +F+++ NW I C + +NS L I H Sbjct: 133 EASEQCERATTPEIFSPTTLQQFVIESNWSGIRYI------CATRQNSPHLLSKIQHDLV 186 Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +V +L+GPEGG+ E T+ + +SLG ILR+ TA+V A++LV A Sbjct: 187 SVGSHDVTLLVGPEGGWTPGEI-TVATDSGYEIVSLGTAILRAVTASVTALSLVGA 241 >gi|223042063|ref|ZP_03612239.1| hypothetical protein AM202_0654 [Actinobacillus minor 202] gi|223017138|gb|EEF15574.1| hypothetical protein AM202_0654 [Actinobacillus minor 202] Length = 243 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 37/258 (14%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL KT S D +++ VLRM G+ I LF+G + + + + V K Sbjct: 2 RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQITLFDGSNHVFHATLQAVEKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117 S ++S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L +W C ++ Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPI----MKLTDW------------CKEQDD 165 Query: 178 LEKL-------HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + KL + I +PN V +LIG EGG EE F T + LG R+LR Sbjct: 166 MLKLNLHPRAKYTIRQLPNMPAAGVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLR 224 Query: 226 SDTAAVAAMALVQAICGD 243 ++TA++AA+ +Q GD Sbjct: 225 TETASLAAITALQVCFGD 242 >gi|229163256|ref|ZP_04291211.1| RNA methyltransferase, RsmE [Bacillus cereus R309803] gi|228620319|gb|EEK77190.1| RNA methyltransferase, RsmE [Bacillus cereus R309803] Length = 249 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGS 174 + ++R++ AAEQ +P ++ P + + LL N C + + +E Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSNEYDVCLVAYEEEAKQG 177 Query: 175 ENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 178 EKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEIAMLREHKFV-PCSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|307153004|ref|YP_003888388.1| hypothetical protein Cyan7822_3159 [Cyanothece sp. PCC 7822] gi|306983232|gb|ADN15113.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7822] Length = 239 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 14/221 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 DQ HYL VLR+K+GD +++ NG+ W K G S + +E + S ++ + Sbjct: 21 DQQHYLKRVLRLKDGDPLIIMNGQGKAW--KAILQGTSAQL-LETLTESTELALNLSLLI 77 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 + K + + +++ E+G+ PVI+ T + ++R R + AAEQ + +P Sbjct: 78 ALPKGSGFEEIVRGCTELGVTTFIPVISERTLLNPSAQKIERWRKIALEAAEQSERQIVP 137 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNV---AILIGPEGGY 200 I P L + V D+ C + + L + P + I GPEGG+ Sbjct: 138 QILEPIKFSIALT----KVKEVKTDKYICVTRRETDHLFSYLTKPLLNPQIIATGPEGGW 193 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + E + S F P+SLGPRILR+ TA V +LV A+ Sbjct: 194 TTGEIDLAISAGF-QPVSLGPRILRAITAPVYVASLVSAMV 233 >gi|326559952|gb|EGE10350.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 46P47B1] gi|326565441|gb|EGE15613.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 103P14B1] gi|326572795|gb|EGE22781.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis BC7] gi|326573982|gb|EGE23931.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis CO72] gi|326577050|gb|EGE26945.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 101P30B1] Length = 246 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 30/242 (12%) Query: 7 LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL G+ A D H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 KS K++ +R+ ++ + + S + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117 Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 H DR ++ ++A EQC + +P LL W NCQ Sbjct: 118 AHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173 Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 SEN + KL +P N+++LIG EGG E + FV P +G R+LR++TA Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227 Query: 230 AV 231 V Sbjct: 228 PV 229 >gi|17547482|ref|NP_520884.1| hypothetical protein RSc2763 [Ralstonia solanacearum GMI1000] gi|17429785|emb|CAD16470.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 25/255 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R +D PL T ++ HVLR+ GD++ LF+G E+ +++ + + R Sbjct: 3 LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGQEFRARLDAINR--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITR---YTQN 119 + + ++ +Y + + +++D++I+K+VE+G+ AI P+ T + Sbjct: 60 DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLS 119 Query: 120 THYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175 + RV+ + +A EQC +P + P L L + + GSE Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPAVSPVAPLRDWLAAAKASARARVMLSPRGSEP 179 Query: 176 ------NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S E++ + + +LIGPEGG S ++E L PL+LG RILR+++A Sbjct: 180 LTQWAVQSRERIGSA----GIELLIGPEGGL-SPDEEALAEAAGYLPLTLGRRILRTESA 234 Query: 230 AVAAMALVQAICGDW 244 A+ A++ + A+ G++ Sbjct: 235 ALVAVSALHAVLGEF 249 >gi|157960429|ref|YP_001500463.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella pealeana ATCC 700345] gi|157845429|gb|ABV85928.1| protein of unknown function DUF558 [Shewanella pealeana ATCC 700345] Length = 243 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 38/233 (16%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ VLRM G+ + LFNG ++L++I S K++ KV + +S + + Sbjct: 27 HVGRVLRMSSGEQVSLFNGDGNDYLAEIISASKKNVEVKV-LSCEANDSESPLNLHLGQV 85 Query: 90 --KTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTHYNMDRV----RTYTISAAEQCDIL 141 + +R+D+ IQKSVE+G+ I P+ + + T +D+ + ISA EQ Sbjct: 86 ISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLTGERLDKKIQQWQKIVISACEQSGRS 145 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHI--PN--V 190 +P I P L +W C ++ KL H + + PN V Sbjct: 146 VVPVIRPA----MQLSDW------------CAEDSDAVKLNLHPRASHGVNGLTLPNNRV 189 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 ++IGPEGG + E F T + LGPR+LR++TAA+ ++ +Q GD Sbjct: 190 RLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISALQLKFGD 241 >gi|325287492|ref|YP_004263282.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga lytica DSM 7489] gi|324322946|gb|ADY30411.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga lytica DSM 7489] Length = 235 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 8/217 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++ VLR EGD + + NG + +KI K + ++ + + + Sbjct: 21 EESKHIVKVLRKVEGDELYITNGNGYLFTAKIMVADVKKCKAQITSKEKKHRPMHWLHIA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P+I +++ ++R+ SA +Q LP Sbjct: 81 VAPTKMNDRFEWFLEKATEIGVDEITPIICDHSERKVLKLERMEKVLQSAMKQSLQTYLP 140 Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + P EF+ K +H + A C E +E +A +V ILIGPEG + S Sbjct: 141 KLNAPIPYAEFVQK--EHKDLLFIAH--CEEEEKVELKRRVAADKDVTILIGPEGDFSSA 196 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E + + F+ P+SLG LR++TAA+ A A V I Sbjct: 197 EIKQAYVNGFI-PVSLGKNRLRTETAAIVACATVAMI 232 >gi|167920517|ref|ZP_02507608.1| hypothetical protein BpseBC_18364 [Burkholderia pseudomallei BCC215] Length = 249 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 22/240 (9%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 75 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 133 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 193 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 194 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 249 >gi|167825846|ref|ZP_02457317.1| hypothetical protein Bpseu9_19397 [Burkholderia pseudomallei 9] Length = 251 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 22/240 (9%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 75 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 133 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 193 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 194 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 249 >gi|302037061|ref|YP_003797383.1| putative Ribosomal RNA small subunit methyltransferase E [Candidatus Nitrospira defluvii] gi|300605125|emb|CBK41458.1| putative Ribosomal RNA small subunit methyltransferase E [Candidatus Nitrospira defluvii] Length = 245 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 24/239 (10%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 +TQ +GD H+L LR+K G+++ L + + ++ V + + R Sbjct: 13 ETQITLTGDLCHHLRASLRVKSGEHLWLTDEHRRRYRVRVLQVAQQAVTAEILEQRQGPV 72 Query: 79 QSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTY 130 +S + + +K + +D+++QK+ E+G+ I P+++R+ T + R + Sbjct: 73 ESSPPLLLAQAMLKGDHMDWVVQKASELGVRTILPLVSRHGVVRPQTDRIAAQVARWQRI 132 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-- 188 AA+Q + P + P C ++ A+ E L A+A +P Sbjct: 133 ATEAAQQSEQWQPPQVLEPLESRRFFSTHTATCSLLLAERR-------EAL-ALASVPLP 184 Query: 189 -----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + ++IGPEGG+ +EE+ TL +SLG ILR+DTAAV A+++VQ+ G Sbjct: 185 RLPSEQICVIIGPEGGW-AEEEITLALAQHCQAVSLGECILRADTAAVTALSIVQSRLG 242 >gi|193213798|ref|YP_001994997.1| 16S ribosomal RNA methyltransferase RsmE [Chloroherpeton thalassium ATCC 35110] gi|193087275|gb|ACF12550.1| protein of unknown function DUF558 [Chloroherpeton thalassium ATCC 35110] Length = 247 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 16/221 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 ++H++ V+R K GD + + +G+ + ++I +GK S K+ Q + ++ + Sbjct: 23 QEFHHIVRVVRKKSGDTLWITDGRGTCFQTEIEQIGKNSAELKILSQEKKPAPKTKIAVA 82 Query: 86 FSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 S +K + R D+ ++K+ E+G+ I P++T T + +R ++A++Q Sbjct: 83 LSLMKASERFDFFLEKATELGVAEILPMMTHRTVSRPAEKQYEKKHERWEKIVLAASKQS 142 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 + P ++P E +LK D I + ENS + L ++ LIG EG Sbjct: 143 RQMWFPKLHPIQPFEEVLKRNDEVKLIAY-------ENSAQHLVQGFSGKSILFLIGGEG 195 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 G+ E F ++LG +LR++TA + A+A+V+A Sbjct: 196 GFTEAEVLAAKQAGF-QEMTLGESVLRAETAGIFAVAMVRA 235 >gi|49187206|ref|YP_030458.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Sterne] gi|49481319|ref|YP_038366.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321684|ref|ZP_00394643.1| COG1385: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] gi|165872033|ref|ZP_02216673.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. A0488] gi|167634645|ref|ZP_02392965.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442] gi|167638597|ref|ZP_02396873.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193] gi|170687378|ref|ZP_02878595.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465] gi|170707490|ref|ZP_02897944.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389] gi|177653268|ref|ZP_02935520.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174] gi|190566983|ref|ZP_03019899.1| RNA methyltransferase, RsmE family [Bacillus anthracis Tsiankovskii-I] gi|196034476|ref|ZP_03101885.1| RNA methyltransferase, RsmE family [Bacillus cereus W] gi|196039365|ref|ZP_03106671.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99] gi|218905448|ref|YP_002453282.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820] gi|227817087|ref|YP_002817096.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC 684] gi|228916943|ref|ZP_04080504.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935631|ref|ZP_04098445.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948024|ref|ZP_04110309.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229077351|ref|NP_846759.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Ames] gi|229093381|ref|ZP_04224486.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42] gi|229123850|ref|ZP_04253043.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201] gi|229220844|ref|YP_021182.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. 'Ames Ancestor'] gi|229600789|ref|YP_002868600.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248] gi|254684068|ref|ZP_05147928.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. CNEVA-9066] gi|254721902|ref|ZP_05183691.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. A1055] gi|254736416|ref|ZP_05194122.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Western North America USA6153] gi|254741454|ref|ZP_05199141.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Kruger B] gi|254750892|ref|ZP_05202931.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Vollum] gi|254757780|ref|ZP_05209807.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Australia 94] gi|49181133|gb|AAT56509.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. Sterne] gi|49332875|gb|AAT63521.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712164|gb|EDR17701.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. A0488] gi|167513445|gb|EDR88815.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193] gi|167530097|gb|EDR92832.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442] gi|170127734|gb|EDS96607.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389] gi|170668573|gb|EDT19319.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465] gi|172081550|gb|EDT66622.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174] gi|190561974|gb|EDV15943.1| RNA methyltransferase, RsmE family [Bacillus anthracis Tsiankovskii-I] gi|195993018|gb|EDX56977.1| RNA methyltransferase, RsmE family [Bacillus cereus W] gi|196029992|gb|EDX68593.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99] gi|218534944|gb|ACK87342.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820] gi|227006628|gb|ACP16371.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC 684] gi|228659564|gb|EEL15211.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201] gi|228689975|gb|EEL43778.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42] gi|228811610|gb|EEM57946.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823991|gb|EEM69809.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842664|gb|EEM87751.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265197|gb|ACQ46834.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248] gi|269850267|gb|AAP28245.2| RNA methyltransferase, RsmE family [Bacillus anthracis str. Ames] Length = 249 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NG+ + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|295092115|emb|CBK78222.1| RNA methyltransferase, RsmE family [Clostridium cf. saccharolyticum K10] Length = 247 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 18/226 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ +L+ NG+D ++L ++S + + ++ + T+ Sbjct: 19 TGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEVEAEIIREKEETTELPARV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 +F + K ++++ +IQK+VE+G I PV +R + + R + SAA+ Sbjct: 79 CLFQGLPKGDKMELIIQKAVELGAYQIIPVASRRAVVKLDKKKEEAKLRRWNAISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEF-----LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 Q +P I P +EF + +D C I + E+ G E + + +A Sbjct: 139 QSKRRIIPQIAP--VMEFREALSAVSGFDLAC-IPYECES-GMEAVRKFVGQADAGQRIA 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IGPEGG+ E E V P+SLG RILR++TA + ++++ Sbjct: 195 VFIGPEGGFEEAEVEAAVQ-AGVVPVSLGKRILRTETAGLCMLSVL 239 >gi|327412916|emb|CAX67930.1| conserved hypothetical protein [Salmonella bongori] Length = 243 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 22/236 (9%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTK 78 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V + + + Sbjct: 16 TQISLCEDAANHIGRVLRMGPGQVLQLFDGSNQVFAAEIISASKKSVEVQV-MKGETDDR 74 Query: 79 QSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR-------- 128 +S + + + ++++ IQKS+E+G+ I P+ +++ +D R Sbjct: 75 ESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPL---FSERCGVKLDSERLNKKRQQW 131 Query: 129 -TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I+A EQC +P I P LE + ++ S N+L + Sbjct: 132 QKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQEPGLKLNLHPRAHASINTLP-----LPV 186 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 187 ERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|297617813|ref|YP_003702972.1| hypothetical protein Slip_1648 [Syntrophothermus lipocalidus DSM 12680] gi|297145650|gb|ADI02407.1| protein of unknown function DUF558 [Syntrophothermus lipocalidus DSM 12680] Length = 253 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 21/234 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DV 82 GD+ +L+ VLR+ GD +L+ +G E L ++ K I+ +V Q+ + + V Sbjct: 22 EGDEAKHLSKVLRLGPGDEVLVCDGSGKELLVRLETAEKGLIKGRVVNQNHPEREPGLTV 81 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYT-----QNTHYNMDRVRTYTISAAE 136 + K ++D+++QK+VE+G+ I PV+T R T + + + R A + Sbjct: 82 GLVQGVGKGEKMDFIVQKAVELGISRIYPVMTDRGTVRLDGERAFHRVQRWEKIAKEACK 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-------ETCGSENSLEKLHAIAHIPN 189 QC +P I T L ++ + F + +T EN+ I Sbjct: 142 QCGRTVVPEIKGITDLTVVMDECRDIPGLFFYEGEWKRPLKTILRENA-----RILRDRG 196 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V + IG EGG+ E ET + LGPRILR++TAA+AA+ V GD Sbjct: 197 VILYIGAEGGFSLREAETARKRGILMA-GLGPRILRTETAALAAITAVMYELGD 249 >gi|120613393|ref|YP_973071.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax citrulli AAC00-1] gi|120591857|gb|ABM35297.1| protein of unknown function DUF558 [Acidovorax citrulli AAC00-1] Length = 240 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 25/219 (11%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 VLR++ GD I LF+G+ GE+ + ++ +G+S + V+ + + ++ + N Sbjct: 29 QVLRLQPGDAITLFDGRGGEYAATVARMGRSDVEVLVDAHDPVEREAGRSVHLVVGMPAN 88 Query: 93 -RLDYMIQKSVEMGMGAIRPVITRYT-----------QNTHYNMDRVRTYTISAAEQCDI 140 R+D++++K+ E+G+ I+PV + + H+ +A EQC Sbjct: 89 ERMDWLVEKATELGVARIQPVAAARSVLKLSGERALKRQAHWQ-----AIAAAACEQCGR 143 Query: 141 LTLPFIYPPTTLE--FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + P L L ++V + E S A A V +L GPEG Sbjct: 144 NRVPRVEAPVPLADWLRLPPAPGAARLVLSLR----EGSRPLHDAAAGAACVQVLHGPEG 199 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G E++ F+ P SLGPR+LR++TA+VAA++L+ Sbjct: 200 GLAPHEEDLALERGFL-PASLGPRVLRAETASVAALSLL 237 >gi|301055803|ref|YP_003794014.1| RNA methyltransferase [Bacillus anthracis CI] gi|300377972|gb|ADK06876.1| RNA methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 249 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NG+ + +I+ ++ Sbjct: 1 MQRYFVEEKYVDETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|284048078|ref|YP_003398417.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM 20731] gi|283952299|gb|ADB47102.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM 20731] Length = 244 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 12/227 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK---VEYQSRSQTKQSDV 82 G H++ HVLRMK G+ + + + + KI+ G++ R VE +S V Sbjct: 18 GQDAHHITHVLRMKLGEQLQIVSLDQVAAVMKITGFGEN-RVDLALVETLEKSHEPSVKV 76 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 I K ++L+++IQK++E+G+ IRP I ++ +R + +AA+ Sbjct: 77 TLIQGLPKQDKLEWVIQKAIELGVTEIRPAIMDHSVVKVDPAKAAKKQERWQKIAEAAAK 136 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q +P + P ++ +IV A E + E L A +A LIGP Sbjct: 137 QSKRDIIPQVALPAKFRDIVTQCPAELKIV-AYEVEDTRGIREVLAAHKDARTIAFLIGP 195 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG +E L + + +SLGPRI+R++TAA+A + + G+ Sbjct: 196 EGGISKDEFALTQELGWHS-VSLGPRIMRTETAALATLTAIMYETGN 241 >gi|313896749|ref|ZP_07830297.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974666|gb|EFR40133.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137 str. F0430] Length = 248 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 26/249 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVG 62 ++RLF +P + + + +G H+LA V+R + G + + G DG ++ ++ Sbjct: 1 MRRLF--YPGELTPEIRITGGDAHHLARVMRAQLG-AVHVVAGTDGRAARMTVTAVARDA 57 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY- 116 ++R Y +++V + + +K + D+++QK+VE+G A+ P++T RY Sbjct: 58 VTLRLD-SYVEDDAPARAEVILVQALLKGEKTDFVVQKAVELGAAALHPIVTEHVVVRYD 116 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETC 172 + R + AA+QC L L + P +++ +L + + + ++F C Sbjct: 117 AKKAAAKTARWQKIADEAAKQCGRLLLMHVAPVGSIDSILGDAEIFGGVDTTVIF----C 172 Query: 173 GSENSLEKLHAIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 ++ + A+ V +++G EGG+ E L + P+SLG ILR++TA Sbjct: 173 YEGERMQSMRAVLRTVTSARVVLIVGAEGGFSPAEAARL-TAAGAQPVSLGHLILRAETA 231 Query: 230 AVAAMALVQ 238 A+AA+ +VQ Sbjct: 232 AIAALTVVQ 240 >gi|113477044|ref|YP_723105.1| 16S ribosomal RNA methyltransferase RsmE [Trichodesmium erythraeum IMS101] gi|110168092|gb|ABG52632.1| protein of unknown function DUF558 [Trichodesmium erythraeum IMS101] Length = 258 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 18/228 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS------ 80 +Q HYL VLR+ GD ++ +G+ WL+K++ I K E + + + + Sbjct: 24 EQQHYLRRVLRLGVGDKFIVMDGEGKWWLAKLT---PDISIKTELIAILEQEIAIQNELP 80 Query: 81 -DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQ 137 ++ I + K N D ++++S E+G+ I PVI+ T + + + R + AAEQ Sbjct: 81 IEITLISALPKGNSFDEVVRQSTELGITHIFPVISSRTVLKPSPQKLKRWQKIATEAAEQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS----LEKLHAIAHIPNVAI 192 + +P I L ++ N + C + N+ LE L + ++ I Sbjct: 141 SERQVVPKIRETVEYSVALSLFEKQNLFTNYHKYICVARNNYPLLLESLLDNQKLESIVI 200 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 IGPEGG+ E E ++ F +SLG RILR TA + A++LV A+ Sbjct: 201 AIGPEGGWTKGEIEAAIAIGF-QAVSLGKRILRGVTAPLVALSLVAAV 247 >gi|167947327|ref|ZP_02534401.1| hypothetical protein Epers_12597 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 + R+D+ +QKSVE+G+ AI P++T + M + ISA EQ + Sbjct: 34 RGERMDFALQKSVELGVSAIVPLVTERCVVRLDPRRQQKRMTHWQKIVISACEQSGRCRV 93 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHS 202 P + P + +L+ +++ + E LH ++ P+ + +L+GPEGG Sbjct: 94 PQLEQPGRFDEMLQQLPATMRLML------DHRASESLHDLSSRPDAIVLLVGPEGGLSP 147 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 EE+ F + LGPR+LR++TA +AA+A +Q G Y Sbjct: 148 EERRLAQQAGF-KGVRLGPRVLRTETAPLAALAAIQTPVGGLY 189 >gi|295398031|ref|ZP_06808087.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294973789|gb|EFG49560.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 254 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 17/254 (6%) Query: 7 LKRLFVDFPLC-IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64 ++R F++ + Q + + YH++ +V+RM+ GD ++L + ++ + IS GK Sbjct: 1 MQRYFIEEETVQLNDQIEMDKEAYHHMLNVMRMQIGDQVMLVTQTEQVFIGELISDQGKK 60 Query: 65 IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + VE + + D K ++LD ++QK+ E+G I PV RY+ Sbjct: 61 AVLRLVELREEIKEIPVDTTLFVGLPKGDKLDLIVQKATELGARHIVPVAMRYSVTKWDQ 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVFADETCGS 174 + +DR++ AAEQ +P I + + ++ L +D C G Sbjct: 121 KKAGKKIDRLKKIAKEAAEQSHRTFVPTIEDLHSVSMVKNRLGEFDQVCVAYEEVAKSGE 180 Query: 175 ENSLEKLHA-IAHIPNVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAA-- 230 L K +A + +A + GPEGG HS+E + L V LGPRILR++TA Sbjct: 181 AALLAKTYASLKAKDRIAFITGPEGGIHSDEIADFTDGLDHVHLCGLGPRILRTETAPLY 240 Query: 231 -VAAMALVQAICGD 243 +++++ + GD Sbjct: 241 LLSSLSFATELLGD 254 >gi|228941478|ref|ZP_04104028.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228967380|ref|ZP_04128414.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto str. T04001] gi|228974408|ref|ZP_04134976.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981003|ref|ZP_04141305.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407] gi|228778663|gb|EEM26928.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407] gi|228785244|gb|EEM33255.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792306|gb|EEM39874.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto str. T04001] gi|228818128|gb|EEM64203.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942094|gb|AEA17990.1| surface protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 249 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|313205520|ref|YP_004044697.1| hypothetical protein Riean_0009 [Riemerella anatipestifer DSM 15868] gi|312444836|gb|ADQ81191.1| protein of unknown function DUF558 [Riemerella anatipestifer DSM 15868] gi|315023392|gb|EFT36402.1| Ribosomal RNA small subunit methyltransferase E [Riemerella anatipestifer RA-YM] gi|325335048|gb|ADZ11322.1| Ribosomal RNA small subunit methyltransferase E [Riemerella anatipestifer RA-GD] Length = 231 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 14/215 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYI 85 D+ H+++ VLRMKEG+ + + +GK + GK + + E Q+++ + Sbjct: 18 DEQHHISKVLRMKEGEMLYVTDGKGNVAKGNLILEGKKVELNILEIQTKTPPFSPYLHIA 77 Query: 86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K +R ++ ++K+ EMG+ I ++T ++ H N+D+++ I+A++Q +L Sbjct: 78 IAPTKNIDRTEFFVEKATEMGISEISFLLTEKSERKHLNIDKIQKKIIAASKQ----SLR 133 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSLEKLHAIAHIPNVAILIGPEGGY 200 + +P L+ + Q A+ T C L I + V LIGPEG + Sbjct: 134 YHFPKVN---DLQKFTSFMQTQTAENTFVAHCDKAFKRVSLSEIPLVDKVCFLIGPEGDF 190 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E E L V +SLG + LR++TA V A Sbjct: 191 SLSEIELLLE-KGVQAISLGNQRLRTETAGVFVAA 224 >gi|74316173|ref|YP_313913.1| 16S ribosomal RNA methyltransferase RsmE [Thiobacillus denitrificans ATCC 25259] gi|74055668|gb|AAZ96108.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 242 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 24/217 (11%) Query: 41 GDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 GD + LFNG+ GE+ + + + + +I E + S+ + Q I S R+D Sbjct: 37 GDALTLFNGRGGEYTASVERITRDEVAVAITGFREIERESRLAITLAQGISS---GERMD 93 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 Y +QK+ E+G+ AI+P+ + + + + + SA EQC LP I P Sbjct: 94 YTLQKATELGVTAIQPIAAKRSVVKLAGERAEKRVAHWQGVVASACEQCGRNRLPSIAAP 153 Query: 150 TTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKET 207 L ++L D + S + +L +A +LI GPEGG+ ++E Sbjct: 154 LPLAQWLGTGTDERLLFL-------SPLAQARLADLAAPSGRDVLIAGPEGGFEADEIAA 206 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 LH+ V P+ LGPR+LR++TAA+AA+A +Q + GD+ Sbjct: 207 LHAAGAV-PIRLGPRVLRTETAALAALAAMQTLWGDF 242 >gi|295103834|emb|CBL01378.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii SL3/3] Length = 247 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 15/231 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DVQ 83 G H+LA V+R K GD ++L +G E+ + I+ G+ + F VE S + + +V Sbjct: 19 GADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDRVDFAVEPGYPSAAEPTVEVT 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139 + K ++L+ +I+ VE+G I P +RY + +R + AA+QC Sbjct: 79 LLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKKEEQKNERYNRIALEAAKQCG 138 Query: 140 ILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAIL 193 LP + P + +++D ++F E G+ L +L A A + +AI+ Sbjct: 139 RGVLPDVALPLPNFGAVCRSFDQYDLVLFCYECGGA--PLRQLLAEAKPADGQKLRLAIV 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G EGG+ +EE E S T + LGPRILR +TA +A ++ V + G+ Sbjct: 197 TGAEGGFAAEEAEMAASAGAKT-VGLGPRILRCETAPLAVLSAVMTLTGNL 246 >gi|313633215|gb|EFS00088.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri FSL N1-067] Length = 255 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKS 64 ++R F+D + + + + +G+ +H++ V+RMKEGD + ++F IS + Sbjct: 1 MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYT 117 + V+ T+ I S + K ++L+Y+IQKS E+G A R V+ Sbjct: 61 VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GS 174 + +DR++ AAEQ +P ++ +L E LL N + +V +E+ G Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180 Query: 175 ENSLEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + +L L A +PN ++L+ GPEGG +E L L V LGPRILR++TA + Sbjct: 181 DRTLASLFKEA-VPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLY 238 Query: 233 AMA 235 ++ Sbjct: 239 VLS 241 >gi|225873892|ref|YP_002755351.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum ATCC 51196] gi|225791516|gb|ACO31606.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum ATCC 51196] Length = 243 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 13/211 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 +G+Q +L VLR + G + G D W I+ + G ++RF + + + + Sbjct: 19 TGEQASHLIRVLRAQPGMEFDIVAG-DRVWHGVIAGITGDAVRFNLVAEVEADPALP-IT 76 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAEQC 138 + + K +R+++ I+K+ E+G+ I+PVI R + Q ++R R AA+Q Sbjct: 77 LLLAVFKFDRMEWAIEKATELGVERIQPVIARRSEKHLAQAAAARVERWRRIAREAAKQS 136 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH----IPNVAILI 194 +P I P L+ ++ + + + A++ + A+A IP + I + Sbjct: 137 RRSDIPEIDEPLPLKTAVRQPGEHLRFLLAEQERSTTFRFALGEALAQAGDEIPKIEIAV 196 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 GPEGG+ +EE E L +SLGPRILR Sbjct: 197 GPEGGWTAEE-EALFDAEGWKAVSLGPRILR 226 >gi|228902836|ref|ZP_04066980.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222] gi|228856792|gb|EEN01308.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222] Length = 249 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PSSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|76812178|ref|YP_334841.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei 1710b] gi|226196890|ref|ZP_03792469.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pakistan 9] gi|229269497|ref|YP_109550.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei K96243] gi|254190942|ref|ZP_04897448.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pasteur 52237] gi|254259381|ref|ZP_04950435.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a] gi|76581631|gb|ABA51106.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 1710b] gi|157938616|gb|EDO94286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pasteur 52237] gi|225931150|gb|EEH27158.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pakistan 9] gi|254218070|gb|EET07454.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a] Length = 255 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240 Query: 230 AVAAMALVQAICGDW 244 A +A + A G W Sbjct: 241 GAAVLAALAARWGGW 255 >gi|52210978|emb|CAH36966.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] Length = 246 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 22/253 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K R Sbjct: 1 MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK--R 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116 + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 58 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 118 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPR- 176 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 177 --ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETAGA 233 Query: 232 AAMALVQAICGDW 244 A +A + A G W Sbjct: 234 AVLAALAARWGGW 246 >gi|126439667|ref|YP_001060446.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei 668] gi|237813838|ref|YP_002898289.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei MSHR346] gi|254199135|ref|ZP_04905550.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13] gi|126219160|gb|ABN82666.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 668] gi|169656965|gb|EDS88362.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13] gi|237506144|gb|ACQ98462.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei MSHR346] Length = 255 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240 Query: 230 AVAAMALVQAICGDW 244 A +A + A G W Sbjct: 241 GAAVLAALAARWGGW 255 >gi|319778530|ref|YP_004129443.1| Ribosomal RNA small subunit methyltransferase E [Taylorella equigenitalis MCE9] gi|317108554|gb|ADU91300.1| Ribosomal RNA small subunit methyltransferase E [Taylorella equigenitalis MCE9] Length = 244 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 13/241 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F PL I + K D ++ LR+KEG I LF+G + E+ IS+ F Sbjct: 5 RFFYTLPLEIGSTIKLPKDITNHAGRSLRLKEGTKISLFSGDNTEYHGTISFNSSDAFFN 64 Query: 69 VE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 VE + S+ + +++D++I+K+VE+G+ P+I + + + Sbjct: 65 VEDIKEISRELPLRIGLAQGLATGDKMDFIIEKAVEIGVSDFYPIIAKRSVLKLNNEKFE 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEK 180 + ISA+EQC + ++ P + EF+ D I D + E Sbjct: 125 KKLAHWSRIIISASEQCGRNKIMQLHQPQDINEFIQNTSDSLYLIAHPDAQSNFLGTAE- 183 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N +LIGPEGG+ S E E L +SLG R+LR++TA + ++ + AI Sbjct: 184 ---TEDFDNSIVLIGPEGGWDSTELEKLRK-ENSRLISLGQRVLRTETAGIVTVSYLTAI 239 Query: 241 C 241 Sbjct: 240 I 240 >gi|163791113|ref|ZP_02185532.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7] gi|159873585|gb|EDP67670.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7] Length = 253 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 13/222 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQ 83 GD +H++ V+RMK G + L ++++I+ + + + VE R Q +V Sbjct: 22 GDSFHHMVKVMRMKVGHRVYLVTKDQKAFIAEINAIEDQDVLLNWVEDDLRQQELPIEVT 81 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQ 137 K ++LD +IQK E+G A P IT++ + +R++ AAEQ Sbjct: 82 IASGLPKGDKLDLIIQKGTELGAHAFIPFAGSFSITKWDAKKAAKKTERLQKIAQEAAEQ 141 Query: 138 CDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCGSE--NSLEKLHAIAHIPNVAIL 193 +P + P ++++ L +KN C + + + E N ++ L + + I+ Sbjct: 142 SHRTKIPTVQPLSSVKQLVEMKNQFDVCLVAYEESAKAGEDQNFVKGLKLLPAGGKLLIV 201 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEGG EE + F+ P +LGPRILR++TA + A+A Sbjct: 202 FGPEGGLSKEEVDAFIESGFL-PCALGPRILRTETAPLYALA 242 >gi|300112836|ref|YP_003759411.1| hypothetical protein Nwat_0111 [Nitrosococcus watsonii C-113] gi|299538773|gb|ADJ27090.1| protein of unknown function DUF558 [Nitrosococcus watsonii C-113] Length = 243 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 29/229 (12%) Query: 14 FPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 FPL + S D+ Y+ VLR++ G + LF+G+ E+ + + V K Sbjct: 8 FPLSLSIGSSVSLDERTLQYVIRVLRLRLGAQLRLFDGRGAEYQAVLEMVEKR------- 60 Query: 72 QSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQ---N 119 +R + + Y+ SP+ + R+DY +QK+VE+G+ I P++T + + Sbjct: 61 AARVRILERIEHYVESPLHIVLGQGISRGERMDYALQKAVELGVSHIVPLLTERSSVNFS 120 Query: 120 THYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 T R+R + ISA EQC +P + P +L L + DH V D SE Sbjct: 121 TGRAEKRLRHWQGVIISACEQCGRNYIPPVEIPRSLADFLGD-DHGGLAVLLDPR--SER 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L+ L + + +LIGPEGG + E + F+ + LGPRILR Sbjct: 178 PLKAL-PLPLDNRLILLIGPEGGLNEIEIKQAQQADFIG-VRLGPRILR 224 >gi|198284928|ref|YP_002221249.1| hypothetical protein Lferr_2857 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666821|ref|YP_002427610.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249449|gb|ACH85042.1| protein of unknown function DUF558 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519034|gb|ACK79620.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 241 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 25/227 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-------IRFKVEYQSRSQTKQSDV 82 H+L VLR + G + LFNG DG W+ + S G S IR + Q RS + Sbjct: 26 HHLLKVLRARHGQELTLFNG-DG-WMYQASLTGISGAQAQLAIRGR---QPRSTGSPLAI 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Q + R D+ +QK+VE+G+ I+PV R+ + R R I+A E Sbjct: 81 QVFLPLTRGERWDWSLQKAVELGVRWIQPVACRHGVVQLSEARGEKRLARWRDIVIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q T+P + PP LE W F + G + + H P + +L GP Sbjct: 141 QSGSTTIPELAPPVALE---TAWAGVRGAAFVLDPEGGQRFTDLGHPG---PEITLLSGP 194 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG +EE + F + L +GPRILR++TAA+AA+A+ QA+ GD Sbjct: 195 EGGLAAEEVAAAQAHGFRS-LRMGPRILRAETAAIAAIAVAQALWGD 240 >gi|169829246|ref|YP_001699404.1| hypothetical protein Bsph_3794 [Lysinibacillus sphaericus C3-41] gi|168993734|gb|ACA41274.1| UPF0088 protein [Lysinibacillus sphaericus C3-41] Length = 245 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 41/256 (16%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL----------FNGKDGEWLS 56 ++R F++ + + SG+ ++ V+RMK+GD I++ G +G+ ++ Sbjct: 1 MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIIVVAQNIAHICKITGFEGDEVA 57 Query: 57 KISYVGKSIRFKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAIRP-- 111 I G++I + + +Q + P K ++L+ + QK+ E+GM A+ P Sbjct: 58 -IDATGETI----------PSSELPIQITVACGLP-KGDKLELITQKATELGMFALLPFE 105 Query: 112 ----VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 ++ + +R++ AAEQ +P +Y P T + LL++ D + Sbjct: 106 AERSIVKWDKKKGAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLQDIDQFDAVFI 165 Query: 168 ADETCGSENS----LEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 ADE +KL + + ++ I+ GPEGG +E E L T +SLGP Sbjct: 166 ADEEDAKAEKRTRFADKLKLVHEKKLTSILIIFGPEGGISRKEAEALLQAGAQT-MSLGP 224 Query: 222 RILRSDTAAVAAMALV 237 RILR++TA + A++ + Sbjct: 225 RILRAETAPLYALSAI 240 >gi|300310746|ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1] gi|300073531|gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 22/230 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +Q + HVLR++ GD I LFNG+ GE+ + +S V K R + ++ S +++++ Y Sbjct: 20 EQIAHHIHVLRLQPGDAITLFNGEGGEYTATLSAVEKK-RAHAQVKTFS-PREAELPYAL 77 Query: 87 SPIKT----NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAE 136 + + ++D++++K+VE+G A++P V+ + + +AAE Sbjct: 78 TLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGERAEKKQAHWQGIIHAAAE 137 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA--HIPN-VAIL 193 QC LP + T + + D + +I+ S E L A H P V ++ Sbjct: 138 QCGRNRLPHLGEVTEFKRWIAQSDLHRRILL------SPRGAEPLSGWARHHPPQAVTLV 191 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +GPEGG+ S+E+E L LS+G R+LR++TA +AA+A + A+ G+ Sbjct: 192 VGPEGGF-SDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 >gi|217420819|ref|ZP_03452324.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 576] gi|217396231|gb|EEC36248.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 576] Length = 255 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTTRGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240 Query: 230 AVAAMALVQAICGDW 244 A +A + A G W Sbjct: 241 GAAVLAALAARWGGW 255 >gi|295677690|ref|YP_003606214.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002] gi|295437533|gb|ADG16703.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002] Length = 246 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 46/265 (17%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FVD L D ++A VLR++ GD+++LFNG+ GE+ +++ V + S Sbjct: 1 MPRFFVDALLYPDDVIALPDDVVRHVA-VLRLQPGDSLVLFNGRGGEYGAELVEVERRSA 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYT-Q 118 R K+ E+++ + +++D++I+K+VE+G P+ T R T + Sbjct: 60 RVKIGEFRAVEVEPPYRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATARSVVRLTGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYP----------------PTTLEFLLKNWDHN 162 + ++ EQC LP + P P L LL Sbjct: 120 RAQRRQQHWQGVVRASCEQCGRNRLPDVTPVGEIGPWLDTLSREPAPDELRLLLS---PR 176 Query: 163 CQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219 I FA A+ P V +LIGPEGG ++E+ F T + L Sbjct: 177 ASIGFA--------------ALPDAPPPGGVTLLIGPEGGLSADEEAAAVEQGF-TAVGL 221 Query: 220 GPRILRSDTAAVAAMALVQAICGDW 244 GPR+LR++TA +A +A + A G W Sbjct: 222 GPRVLRTETAGIAVLAALAARWGGW 246 >gi|218899479|ref|YP_002447890.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842] gi|218543817|gb|ACK96211.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842] Length = 249 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|78224577|ref|YP_386324.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter metallireducens GS-15] gi|78195832|gb|ABB33599.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 263 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 19/234 (8%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD- 81 + GD + ++ VLR+K + L +G E I +G+ V + R Sbjct: 19 RIEGDLFRHMVKVLRLKIDTRVRLADGHGVECAGIIQEIGRD-HLTVAVEERHAVAPVGG 77 Query: 82 ---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH-YNMDRVRTYTI 132 + I K +++ ++QK E+G+ + P ++R + + R + Sbjct: 78 SLRITLIQGLPKGEKMELILQKGTELGVNEVVPFQADRSVSRIPADRQDERLRRWQRIAA 137 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---N 189 AA Q L +P + ++ +++ DH+ +++ +E E + AI P + Sbjct: 138 EAARQAGRLDIPTVQLAQGMDEAVRDTDHDLKLLLWEE----ERATTLQGAINVRPRPAS 193 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +A+++GPEGG EE ET F+ P++LG RILR++TA +A +A++Q + GD Sbjct: 194 IAVIVGPEGGLTREEAETARRTGFI-PVTLGRRILRTETAGIALLAILQYLYGD 246 >gi|326569446|gb|EGE19506.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis BC8] Length = 246 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 7 LKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 + R FVD PL G+ H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIITLPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIDK 60 Query: 63 KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 KS K++ +R+ ++ + + S + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117 Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 H DR ++ ++A EQC + +P LL W NCQ Sbjct: 118 AHLKYDRDFKKITHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173 Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 SEN + KL +P N+++LIG EGG E + FV P +G R+LR++TA Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227 Query: 230 AV 231 V Sbjct: 228 PV 229 >gi|224826821|ref|ZP_03699921.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002] gi|224601041|gb|EEG07224.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002] Length = 242 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 17/220 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT-- 91 VLR+ GD I LFNG+ GE+ + +S V K V + ++S V + + Sbjct: 27 QVLRLNPGDAITLFNGRGGEYPATLSRVLKRDAECVLGEFADVARESPVWLGLAQAISGG 86 Query: 92 NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 +++++ +QK VEMG+ +P V+ + + R + I+A EQC ++P Sbjct: 87 DKMEFTLQKGVEMGVSVFQPLTAERSVVRLSGERADKRVARWQEIVIAACEQCGRNSVPE 146 Query: 146 IYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI-GPEGGYHSE 203 + P TL E+L + + + ++V S ++L IA P A L+ GPEGG + Sbjct: 147 VRPILTLAEWLRELPEADARLVL------SPLGTQRLADIAAAPASAWLMAGPEGGLSAR 200 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E+ + TPL LGPRILR++TAA+AA+A +Q + GD Sbjct: 201 EEGAAIEAGW-TPLKLGPRILRTETAALAAVAAIQTVWGD 239 >gi|300118699|ref|ZP_07056427.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1] gi|298723948|gb|EFI64662.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1] Length = 249 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S + K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|194335493|ref|YP_002017287.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme BU-1] gi|194307970|gb|ACF42670.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme BU-1] Length = 247 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 GD++H+L VLR K G+ IL+ +G + I+ +GK S + SR ++V Sbjct: 22 GDEFHHLVRVLRKKTGEKILVTDGNGLRCEASIAEIGKTSFTADILACSRIDRPNTEVTV 81 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 S +K R + ++K+ E+G+ I P++T T + ++R RT +SAA Q Sbjct: 82 ALSLLKAPQRFELFLEKATELGVSTIIPMLTARTLSHPSNEKVQGKLNRWRTIMLSAARQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP + P T + ++ +++ E S + LIG E Sbjct: 142 SKRHYLPQLTEPLTFKKAAALQGYDLKLI------PYELSEAPPKVKCSGKKILFLIGGE 195 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GG+ + E E + F LS G ILR++TA + A+ALV+ Sbjct: 196 GGFTANEIEEARAAGF-NELSFGKTILRAETAGIFAVALVR 235 >gi|167904305|ref|ZP_02491510.1| hypothetical protein BpseN_18786 [Burkholderia pseudomallei NCTC 13177] Length = 262 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 22/239 (9%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P VI Sbjct: 75 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVIR 133 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 193 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 194 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTET 248 >gi|91785218|ref|YP_560424.1| hypothetical protein Bxe_A0561 [Burkholderia xenovorans LB400] gi|91689172|gb|ABE32372.1| Conserved hypothetical protein 46 [Burkholderia xenovorans LB400] Length = 251 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 24/254 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + S Sbjct: 6 MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYT-- 117 + ++ E+++ + +++D++I+K+VE+G A P+ T R T Sbjct: 65 KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLTGE 124 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADE 170 Q H + + ++ EQC LP + P + L + + +I+ + Sbjct: 125 RAQRRHAHWQGI---VRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPR 181 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + S L A V +L+GPEGG+ + E+ F T + LGPR++R++TA Sbjct: 182 ---ASISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAG 237 Query: 231 VAAMALVQAICGDW 244 +A ++ + A G W Sbjct: 238 IAVLSALAAGWGGW 251 >gi|37523950|ref|NP_927327.1| hypothetical protein gll4381 [Gloeobacter violaceus PCC 7421] gi|35214956|dbj|BAC92322.1| gll4381 [Gloeobacter violaceus PCC 7421] Length = 238 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 19/241 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLF+D + Q HYL VLR+++G + ++ +G W + + G ++R Sbjct: 6 RLFLDPVQFSGDTARLDPAQSHYLRQVLRLRDGASCIVGDGLGNTW--QATLAGDTVRLG 63 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 R+ V + K +R D+++QKS E+G I P++ + Q R Sbjct: 64 -SLLPRTGELPLPVTIACAVPKGDRWDWLLQKSTELGADRIVPLVCERSVVQPDAKRHKR 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + AAEQ + LP + PP L++ +++ C + L + + Sbjct: 123 WQAIVREAAEQSERAVLPVVEPPALFGMFLRHPARGTRLI-----CTARGVRPPL--LNY 175 Query: 187 IPNVA--ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +P A +L GPEGG+ E + SLG RILR++TA + A+ + A W Sbjct: 176 LPAAALTLLFGPEGGFSETEVAAATDAGYQV-CSLGSRILRTETAPLLALGWIAA----W 230 Query: 245 Y 245 Y Sbjct: 231 Y 231 >gi|296160467|ref|ZP_06843283.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1] gi|295889216|gb|EFG69018.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1] Length = 246 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 24/254 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + S Sbjct: 1 MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 + ++ E+++ + +++D++I+K+VE+G A P+ T + Sbjct: 60 KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLSGE 119 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADE 170 Q H + + ++ EQC LP + P + L + + +I+ + Sbjct: 120 RAQRRHAHWQGI---VRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPR 176 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + S L A V +L+GPEGG+ + E+ F T + LGPR++R++TA Sbjct: 177 ---ASISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAG 232 Query: 231 VAAMALVQAICGDW 244 +A ++ + A G W Sbjct: 233 IAVLSALAAGWGGW 246 >gi|313203702|ref|YP_004042359.1| hypothetical protein Palpr_1227 [Paludibacter propionicigenes WB4] gi|312443018|gb|ADQ79374.1| protein of unknown function DUF558 [Paludibacter propionicigenes WB4] Length = 233 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQS-DVQY 84 ++ + VLRM+ GD I + +G G + + IS K F+++ K+ + Sbjct: 18 EESKHAVKVLRMQVGDAISVVDGVGGFYNALISNPHPKHCEFEIKKTILEFGKRDYKIHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K RL++ I+K+ E+G+ I P+I R+++ +R+ +SAA+Q Sbjct: 78 AIAPTKNIERLEWFIEKATEIGIDQITPIICRFSERKIVKAERLEKIIVSAAKQSLKAYF 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + P T + L+ HN F C E+ + I +V ILIGPEG + E Sbjct: 138 PILNPLCTFDELINK--HNASQKFIAH-CYEEDKKLLQNEIQKSSDVLILIGPEGDFSKE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E ++ F+ P+SLG LR++TA V A Sbjct: 195 EVQSAILHDFI-PVSLGESRLRTETAGVVA 223 >gi|228929355|ref|ZP_04092379.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830306|gb|EEM75919.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 249 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NG+ + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEIIVLREHNFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|53725660|ref|YP_104018.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei ATCC 23344] gi|124384319|ref|YP_001027236.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC 10229] gi|126452434|ref|YP_001067709.1| hypothetical protein BURPS1106A_3472 [Burkholderia pseudomallei 1106a] gi|166998553|ref|ZP_02264411.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20] gi|229008328|ref|YP_991742.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei SAVP1] gi|229027672|ref|YP_001082829.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC 10247] gi|242315666|ref|ZP_04814682.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b] gi|254178856|ref|ZP_04885510.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC 10399] gi|254202737|ref|ZP_04909100.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH] gi|254208079|ref|ZP_04914429.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU] gi|254299290|ref|ZP_04966740.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 406e] gi|52429083|gb|AAU49676.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC 23344] gi|124292339|gb|ABN01608.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10229] gi|126226076|gb|ABN89616.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1106a] gi|147746984|gb|EDK54061.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH] gi|147751973|gb|EDK59040.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU] gi|157808975|gb|EDO86145.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 406e] gi|160694770|gb|EDP84778.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC 10399] gi|242138905|gb|EES25307.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b] gi|243065237|gb|EES47423.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20] Length = 255 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 30/259 (11%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + R ++ EQC LP I P ++ +D + A G+ Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP-------VRGFDAWLDALPATPADGA 177 Query: 175 ENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L A A +P +V +LIGPEGG +E++ + F LSLGPR+LR Sbjct: 178 LRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLR 236 Query: 226 SDTAAVAAMALVQAICGDW 244 ++TA A +A + A G W Sbjct: 237 TETAGAAVLAALAARWGGW 255 >gi|317405816|gb|EFV86104.1| hypothetical protein HMPREF0005_02771 [Achromobacter xylosoxidans C54] Length = 243 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 10/241 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F D PL + H+ VLR++ G+ ++LFNG+ GE+ + + GK+ + Sbjct: 5 RFFCDAPLSAGARIALPEALAHHAIRVLRLRAGEPMVLFNGQGGEYPAVLEIEGKAGFAQ 64 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTH 121 + + R + + +++D++++K+VE+G + A R V+ Sbjct: 65 LGAFDPREAELAGRITLVQGLPAGDKMDWVVEKAVELGAAHVCPIAAQRSVLQLAGPRLE 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + SAAEQC L + P L L +++ + + +L Sbjct: 125 KRVAHWQRIAQSAAEQCGRNRLMAVDAPMALADWLAQPADGLRLLCHPDA--DADLAGRL 182 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A + ++ +L+GPEGG+ S+++ L V + GPR+LR++TA +A ++ A+ Sbjct: 183 GATPGLQSLTLLVGPEGGW-SDKELALAREAGVQAVRFGPRVLRTETAGLALISAAGALL 241 Query: 242 G 242 G Sbjct: 242 G 242 >gi|238561245|ref|ZP_00442303.2| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse 4] gi|121227903|gb|ABM50421.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei SAVP1] gi|126242088|gb|ABO05181.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10247] gi|238524927|gb|EEP88357.1| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse 4] Length = 246 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 30/257 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K R Sbjct: 1 MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK--R 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116 + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 58 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLS 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + R ++ EQC LP I P ++ +D + A G+ Sbjct: 118 GERADKRVSHWRGVVRASCEQCGRNRLPEIAP-------VRGFDAWLDALPATPADGALR 170 Query: 177 SLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 L A A +P +V +LIGPEGG +E++ + F LSLGPR+LR++ Sbjct: 171 LLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTE 229 Query: 228 TAAVAAMALVQAICGDW 244 TA A +A + A G W Sbjct: 230 TAGAAVLAALAARWGGW 246 >gi|29726851|pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of Haemophilus Influenzae. Northeast Structural Genomics Consortium Target Ir73. gi|29726852|pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of Haemophilus Influenzae. Northeast Structural Genomics Consortium Target Ir73 Length = 246 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLR EG+ + LF+G + + +KI K Sbjct: 1 RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKK- 59 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S ++ + + R ++ IQKSVE+G+ I P+ +++ Sbjct: 60 SVKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPL---WSERCGV 116 Query: 123 NMDRVRT---------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P I P L+ +W C Sbjct: 117 KLDAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQ----DW------------CA 160 Query: 174 SENSLEKL--HAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + KL H AH IP V +LIG EGG ++E F T + LG Sbjct: 161 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 219 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA++ +Q GD Sbjct: 220 RVLRTETASLAAISALQICFGD 241 >gi|15613913|ref|NP_242216.1| hypothetical protein BH1350 [Bacillus halodurans C-125] gi|10173966|dbj|BAB05069.1| BH1350 [Bacillus halodurans C-125] Length = 250 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 35/254 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV T +GD ++ V+RM GD ++ +G G+++R Sbjct: 1 MQRYFVPKEQMTDTYVTITGDDVKHIIKVMRMTIGDELICSDGH-----------GRTVR 49 Query: 67 FKVEYQSRSQTKQSDVQYIFS----PI---------KTNRLDYMIQKSVEMG------MG 107 ++E + S+ ++ + PI K ++LDY++QK E+G Sbjct: 50 CEIEKANDSEVLARVIEPLIPNTELPIRVTIAQALPKGDKLDYIVQKGTELGAQAFWPFS 109 Query: 108 AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 A R ++ + +R+ AAEQ +P I P LL+ + + Sbjct: 110 ASRSIVKWDEKKGRKKTERLMKIAKEAAEQSYRERIPSIETPLAFSKLLQEISGFTKTIV 169 Query: 168 ADETCGSENSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 A E E L L+ + H ++ ++IGPEGG+ +EE + + P LGPRI Sbjct: 170 AYEEEAKEGRLMTFAACLNELHHGDSLLVIIGPEGGFTTEEIDAIQRAGGA-PAGLGPRI 228 Query: 224 LRSDTAAVAAMALV 237 LR++TA++ A+A + Sbjct: 229 LRTETASLYALAAI 242 >gi|113461711|ref|YP_719780.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 129PT] gi|112823754|gb|ABI25843.1| 16S rRNA m(3)U-1498 methyltransferase [Haemophilus somnus 129PT] Length = 245 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 45/243 (18%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM+ G+ I LF+G + + + I+ K +V SR + + Sbjct: 21 SDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA-IEVNILSRQLDNRESPLF 79 Query: 85 I-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132 I + + R+++ IQKSVE+G+ I P+ +++ +D+ R I Sbjct: 80 IHLGQVISRGERMEFTIQKSVELGVNIITPL---WSERCGVKLDKDRMEKKIQQWQKIAI 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH---------- 182 SA EQC +P I P L+ +W C ++ KL+ Sbjct: 137 SACEQCGRNIVPEIRPLMKLQ----DW------------CAEQDGTLKLNLHPRAKYTIR 180 Query: 183 AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + IP V +LIGPEGG ++E + F T + LG R+LR++TAA++A+ +Q Sbjct: 181 TLPEIPPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETAALSAITALQVC 239 Query: 241 CGD 243 GD Sbjct: 240 FGD 242 >gi|313637806|gb|EFS03151.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri FSL S4-171] Length = 255 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKS 64 ++R F+D + + + + +G+ +H++ V+RMKEGD + ++F IS + Sbjct: 1 MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYT 117 + V+ T+ I S + K ++L+Y+IQKS E+G A R V+ Sbjct: 61 VILNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GS 174 + +DR++ AAEQ +P ++ +L E LL N + +V +E+ G Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180 Query: 175 ENSLEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + +L L A +PN ++L+ GPEGG +E L L V LGPRILR++TA + Sbjct: 181 DRTLASLFKEA-VPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLY 238 Query: 233 AMA 235 ++ Sbjct: 239 VLS 241 >gi|326319528|ref|YP_004237200.1| ribosomal RNA small subunit methyltransferase E [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376364|gb|ADX48633.1| Ribosomal RNA small subunit methyltransferase E [Acidovorax avenae subsp. avenae ATCC 19860] Length = 240 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 15/214 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 VLR++ GD I LF+G+ GE+ + ++ +G+S + V + + ++ + N Sbjct: 29 QVLRLQPGDAITLFDGRGGEYAATVARMGRSDVEVLVGAHDPVEREAGRSVHLVVGMPAN 88 Query: 93 -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 R+D++++K+ E+G+ I+PV + + + +A EQC +P Sbjct: 89 ERMDWLVEKATELGVARIQPVAAARSVLKLSGERALKRQAHWQAIAAAACEQCGRNRVPQ 148 Query: 146 IYPPTTLE--FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + P L L ++V + E S A A V +L GPEGG Sbjct: 149 VEAPVPLADWLRLPPAPDAARLVLSLR----EGSRPLHDAAASAACVQVLHGPEGGLAPH 204 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E++ F+ P SLGPR+LR++TA+VAA++L+ Sbjct: 205 EEDLALERGFL-PASLGPRVLRAETASVAALSLL 237 >gi|167622641|ref|YP_001672935.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella halifaxensis HAW-EB4] gi|167352663|gb|ABZ75276.1| protein of unknown function DUF558 [Shewanella halifaxensis HAW-EB4] Length = 243 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 20/246 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67 R++ + L I + ++ VLRM G+ + LFNG ++L++I S K++ Sbjct: 5 RIYQESSLVIGQAVALDDEAAGHVGRVLRMSVGEQVSLFNGDGNDYLAEIISASKKNVEV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 KV + +S + + + +R+D+ IQKSVE+G+ I P+ + + Sbjct: 65 KV-LSCEANNSESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + +SA EQ +P I P L ++ N L Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSVVPVIRPAMQLSDWCAEPSDAVKLNLHPRASHGVNGLT 183 Query: 180 KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +PN V ++IGPEGG + E F T + LGPR+LR++TAA+ ++ + Sbjct: 184 -------LPNNRVRLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|148657147|ref|YP_001277352.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus sp. RS-1] gi|148569257|gb|ABQ91402.1| protein of unknown function DUF558 [Roseiflexus sp. RS-1] Length = 260 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 15/247 (6%) Query: 3 IHSHLKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 I S+ R FVD P + GKA + H LA VLR+ GD I+L +G+ ++ + Sbjct: 9 IRSNTYRFFVD-PSALDG-GKARLFDPELGHQLADVLRLGRGDRIILLDGEGWQYTVSLE 66 Query: 60 YVGK--SIRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRY 116 V + ++ +E + + + I+ P I+T R ++ +QK VE+G P Sbjct: 67 AVDRRGTVNGAIEAREAAGGEPRINLTIYLPLIRTERFEWALQKGVELGAATFVPTTCAR 126 Query: 117 TQN---THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + + + R R AAEQ LP + P WD + + E Sbjct: 127 SIDIAPDERKLTRWRRIIREAAEQSRRGRLPRLTPAIPFAEACAQWDSSDPALLLWEGTD 186 Query: 174 S---ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + ++L L ++A+ GPEGG +E++ ++ +SLGPR LR++TA Sbjct: 187 ATPLAHALRILQQHTSPTSLALFSGPEGGLTDDERQCAGRHGIMS-VSLGPRTLRAETAP 245 Query: 231 VAAMALV 237 +AA A++ Sbjct: 246 IAATAII 252 >gi|307730990|ref|YP_003908214.1| hypothetical protein BC1003_2971 [Burkholderia sp. CCGE1003] gi|307585525|gb|ADN58923.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1003] Length = 246 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 23/226 (10%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV----EYQSRSQTKQSDVQYIFSPI 89 VLR++ GD+I+LFNG+ GE+ +++ + + +I KV + + + S Q I S Sbjct: 28 VLRLQVGDSIVLFNGEGGEYSAELVTIERRAITVKVREFRDIEVEPPYRLSLAQGIAS-- 85 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT------ISAAEQCDILTL 143 +++D++I+K+VE+G + P+ T + +R +T ++ EQC L Sbjct: 86 -GDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGERALRRHTHWEGIVRASCEQCGRNRL 144 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADE-----TCGSENSLEKLHAIAHIPNVAILIGPEG 198 P + P + L ++ ADE + + L A V +L+GPEG Sbjct: 145 PEVMPVREIATWL---GAMPRLPAADELRILLSPRASIQFSALPTTAPKGPVTVLVGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G+ + E+ F + LGPR+LR++TA +A ++ + A+ G W Sbjct: 202 GFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGIAVLSALAAMWGGW 246 >gi|52141192|ref|YP_085637.1| hypothetical protein BCZK4058 [Bacillus cereus E33L] gi|51974661|gb|AAU16211.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 249 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NG+ + +I+ ++ Sbjct: 1 MQRYFVEEKHVNETSIRIVGDDVHHIARVMRMSVGDHIYCCVNGRTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|300718242|ref|YP_003743045.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064078|emb|CAX61198.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 243 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 22/229 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 + +++ VLRM G + LF+G + + ++I K S+R + +SR +++S + Sbjct: 23 EAANHVGRVLRMGAGQALELFDGSNLTFAAEIVQADKKSVRVSL-GESREDSRESPLHLH 81 Query: 86 FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISA 134 + + ++++ IQK+VE+G+ I P+ +++ +D R I+A Sbjct: 82 LGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGVKLDAERLAKKHQQWQKIVIAA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC ++P + LE D ++ S N+L + V +LI Sbjct: 139 CEQCGRNSVPEVREAMMLERWSAEQDDGLKLNLHPRASQSINTLP-----LPVERVRLLI 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 194 GPEGGLTADEISMTAQYGF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|222529537|ref|YP_002573419.1| hypothetical protein Athe_1548 [Caldicellulosiruptor bescii DSM 6725] gi|222456384|gb|ACM60646.1| protein of unknown function DUF558 [Caldicellulosiruptor bescii DSM 6725] Length = 243 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + +++ VLR +EGD I L +G + ++ S+I + K R K+ +S++ + ++ IF Sbjct: 22 EDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKD-RIKLLIESKTLNDRESIKNIF 79 Query: 87 ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138 IK ++D+++QK+ E+G+ I PV+++ ++ ++R R A +QC Sbjct: 80 LFQCIIKNQKMDFIVQKATELGVKTIVPVVSKRVVIDISEKQEKKVERWRKIAQEAQKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I P + + + + I+F SE S + + N+ ILIGPEG Sbjct: 140 LRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS--EWCISSDYNNIGILIGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE E L + V +SLG RILRS+TA++AA++++ G+ Sbjct: 198 GFEEEEIEELKTFKNVQVISLGKRILRSETASIAALSILMHEVGE 242 >gi|119492311|ref|ZP_01623658.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106] gi|119453196|gb|EAW34363.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106] Length = 259 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 11/245 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 L+RL + + +Q HYL VLR+++GD ++ +G+ WL+++ + Sbjct: 3 QLQRLAIALAQISNRHIDLTAEQQHYLGRVLRLRQGDRFIVIDGRGHWWLAQLQVMLPAP 62 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 S K+ Q + ++ + D +++ S E+G+ I PVI++ T + + Sbjct: 63 SPHAKILEAISVQNELPIAVKLWVSLPKTGFDDLVRYSTELGVSEIVPVISQRTVLKPSS 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEK 180 ++R R AAEQ + +P + P + + ++ D + C + L Sbjct: 123 QKVERWRRIIREAAEQSERQIIPTLVDPISFANAIADFPDFSLAATSQPYLCLARGDLPH 182 Query: 181 LH-----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L+ + ++ + GPEGG+ S E E + F +SLG RILR+ TA V A++ Sbjct: 183 LYDCMSSTQSTCDSITLATGPEGGWTSAEVEMAIASGF-QAVSLGRRILRAVTAPVVALS 241 Query: 236 LVQAI 240 V AI Sbjct: 242 YVSAI 246 >gi|313680577|ref|YP_004058316.1| hypothetical protein Ocepr_1690 [Oceanithermus profundus DSM 14977] gi|313153292|gb|ADR37143.1| protein of unknown function DUF558 [Oceanithermus profundus DSM 14977] Length = 233 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 13/210 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+L HVLR++ G +++F+G E +++++ G + R+ ++ + Sbjct: 18 AGGEAHHLLHVLRVRPGREVVVFDGAGLEAEARVTHAGGGAVRLAAGEPRAVRREPPLAP 77 Query: 85 IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCD 139 + + +K ++L +++ E+G+ P++T + + ++R+R + AA+Q Sbjct: 78 VLYVALLKGDKLADVVRAGSELGVVRFVPLVTERSVPREMGRAKLERLRRIAVEAAKQSG 137 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + PP L L+ D G+ +L ++ A A+ GPEGG Sbjct: 138 RSRLPEVAPPRALAA-LEPVDFGLVA-----HPGAARTLAEV-AWPEAGEAALASGPEGG 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + E L L F P+ LGPRILR++TA Sbjct: 191 FTEAEVAHLAGLGF-APVYLGPRILRAETA 219 >gi|15603733|ref|NP_246807.1| hypothetical protein PM1868 [Pasteurella multocida subsp. multocida str. Pm70] gi|12722296|gb|AAK03952.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 244 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQ 83 S D +++ VLRM+ GD ++LF+G + + ++I+ + K +V+ Q + ++S ++ Sbjct: 21 SEDAANHVGRVLRMQAGDKLVLFDGSNHVYDAQITQISKK-HVEVDILQHQWDDRESPLK 79 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISA 134 + + R+++ IQKSVE+G+ I P+ + + DR+ + ++A Sbjct: 80 IHLGQVISRGERMEFTIQKSVELGVHVITPLWSERC-GVKLDADRLEKKIQQWQKIAVAA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P L+ D ++ S +L + A V +LI Sbjct: 139 CEQCGRNVVPEIRPMMKLQDWCAEKDGALKLNLHPRAQYSIRTLPDIPA----AGVRLLI 194 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G EGG ++E F+ L LG R+LR++TA++AA+ +Q GD Sbjct: 195 GSEGGLSAQEIAQTEQQDFIEVL-LGKRVLRTETASLAAITALQICFGD 242 >gi|283796176|ref|ZP_06345329.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1] gi|291076395|gb|EFE13759.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1] gi|295115547|emb|CBL36394.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium SM4/1] Length = 247 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 18/226 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ +L+ NG+D ++L ++S + + ++ + T+ Sbjct: 19 TGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEVEAEIIREKEETTELPARV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 +F + K ++++ +IQK+VE+G I PV ++ + + R + SAA+ Sbjct: 79 CLFQGLPKGDKMELIIQKAVELGAYQIIPVASKRAVVKLDKKKEEAKLRRWNAISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEF-----LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 Q +P I P +EF + +D C I + E+ G E + + +A Sbjct: 139 QSKRRIIPQIAP--VMEFREALSAVSGFDLAC-IPYECES-GMEAVRKFVGQADAGQRIA 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IGPEGG+ E E V P+SLG RILR++TA + ++++ Sbjct: 195 VFIGPEGGFEEAEVEAAVQ-AGVVPVSLGKRILRTETAGLCMLSVL 239 >gi|40889966|pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein Hi0303, Pfam Duf558 gi|40889967|pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein Hi0303, Pfam Duf558 Length = 257 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 45/262 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLR EG+ + LF+G + + +KI K Sbjct: 4 RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKK- 62 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 KVE R K+S ++ + + R ++ IQKSVE+G+ I P+ +++ Sbjct: 63 SVKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPL---WSERCGV 119 Query: 123 NMDRVRT---------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P I P L+ +W C Sbjct: 120 KLDAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQ----DW------------CA 163 Query: 174 SENSLEKL--HAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + KL H AH IP V +LIG EGG ++E F T + LG Sbjct: 164 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 222 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR++TA++AA++ +Q GD Sbjct: 223 RVLRTETASLAAISALQICFGD 244 >gi|229577456|ref|YP_001126527.2| 16S ribosomal RNA methyltransferase RsmE [Geobacillus thermodenitrificans NG80-2] Length = 258 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 15/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 SGD H+++ V+RMK GD I + +I + Q + + ++ V+ Sbjct: 19 SGDDAHHISRVMRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K + + +IQK E+G A R V+ + ++R + AAE Sbjct: 79 YIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET---CGSENSLEKLHAIAHIPNVAIL 193 Q + LP + P +L+ L+ + +FA E G SL L A P ++L Sbjct: 139 QAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQ-PGSSLL 197 Query: 194 --IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEGG+ EE E L F+ P SLGPRILR++TA + +A Sbjct: 198 AVFGPEGGFSREEAEQLKQSGFL-PCSLGPRILRTETAPLYLLA 240 >gi|329118281|ref|ZP_08246991.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465702|gb|EGF11977.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 239 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F D LC + +L HVLR + G+ I LFNG E+ + ++ V K Sbjct: 1 MPRFFADAALCRGATVALPDNVVRHL-HVLRCRAGEKIALFNGNGREYAAVLARVDKRAA 59 Query: 67 FKVEYQSRSQTKQSD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R +S V + + R+D+ +QKSVE+G+ A+ PVI+ + + Sbjct: 60 MAEILDERPSENESPLAVTLVQAVSAGERMDFTLQKSVELGVAAVIPVISSRSVVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P L + S N+ Sbjct: 120 RAQKRVVRWQEIVVSACEQSGRCVVPEVRP-----LLPYAQALAALPDADAKLLMSLNNR 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L I +V ++ GPEGG+ EE+E + F + L+LG R+LR++TAA+AA+A +Q Sbjct: 175 QSLRGIPPPQSVILMAGPEGGWTHEEEEAAFAAGF-SGLTLGRRVLRTETAALAALAAMQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 TLWGDF 239 >gi|118479479|ref|YP_896630.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis str. Al Hakam] gi|225866292|ref|YP_002751670.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102] gi|229186551|ref|ZP_04313712.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1] gi|118418704|gb|ABK87123.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|225790106|gb|ACO30323.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102] gi|228596810|gb|EEK54469.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1] Length = 249 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NG+ + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S + K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|197116640|ref|YP_002137067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter bemidjiensis Bem] gi|197086000|gb|ACH37271.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter bemidjiensis Bem] Length = 246 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 19/232 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSD 81 +G+ Y ++A VLR+K+G + L D + VG ++R ++ Sbjct: 19 TGELYRHMARVLRIKQGSEVELIEDGDSRHRGTVEEVGAKSLTVRISASAAPAAEEPGLR 78 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135 + + K +LD ++QK E+G+ A R V+ + + R AA Sbjct: 79 ITLLQGMPKGEKLDLILQKCTELGVAEVVAFDAARSVVKLRGDRSATRLARYEKIVREAA 138 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH----AIAHIPNVA 191 Q + P + TL +L + H +++ + G E + LH A +VA Sbjct: 139 RQSGRRSAPKVALGGTLADVLADSHHEVKLLLYE---GEEKT--TLHGCFGAFEAPESVA 193 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +++GPEGG EE + F TP++LG RILR++TA +A ++++Q GD Sbjct: 194 VVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSILQFHWGD 244 >gi|260775560|ref|ZP_05884457.1| ribosomal RNA small subunit methyltransferase E [Vibrio coralliilyticus ATCC BAA-450] gi|260608741|gb|EEX34906.1| ribosomal RNA small subunit methyltransferase E [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 106/221 (47%), Gaps = 28/221 (12%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 MK G +LLF+G E+ + I V K +I +VE S S Q I + Sbjct: 1 MKVGQEVLLFDGYGAEFPAVIEEVSKKSVTVNITERVERSSESPLDLHLGQVIS---RGE 57 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTL 143 ++++ IQKSVE+G+ I P+I+ + +D+ R ISA EQ + Sbjct: 58 KMEFTIQKSVELGVNTITPLIS---ERCGVKLDQKRFEKKLAQWQKVAISACEQSGRNIV 114 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P I P L E+ +++D ++ S N+L A + V +LIGPEGG + Sbjct: 115 PQIRPIMQLDEWCAEDYD-GLKLNLHPRAKYSINTLP-----APVEKVRLLIGPEGGLSA 168 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EE E F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 169 EEIEKTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 208 >gi|253990749|ref|YP_003042105.1| 16S ribosomal RNA methyltransferase RsmE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639080|emb|CAR67692.1| Hypothetical protein yggJ [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782199|emb|CAQ85363.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 270 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S + +++ VLRM G + LF+G + + ++I+ K S++ + + + + Sbjct: 48 SDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAEITEASKKSVKVHISNSTLADNESPLNL 107 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAA 135 ++ I + ++++ IQKSVE+G+ I P+I+ + DR+ + I+A Sbjct: 108 HLGQVISRGEKMEFTIQKSVELGVNTITPLISERC-GVKLDGDRLAKKLQQWQKIAIAAC 166 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P LE D + ++ S N+L + V +LIG Sbjct: 167 EQCCRNRIPEIRPVMQLEQWCAENDGSLKLNLHPRANQSINTLP-----LPVEKVRLLIG 221 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG ++E + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 222 PEGGLSTDEIAMTANHQF-TDILLGPRVLRTETTALTAITALQVRFGD 268 >gi|154482579|ref|ZP_02025027.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC 27560] gi|149736604|gb|EDM52490.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC 27560] Length = 245 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 16/224 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK+G+ IL+ +G+D E++ I + + +R K+E + + Sbjct: 20 GSDVNHIKNVLRMKKGETILISDGEDREYVCTIDELENEQVRAKIEDVNGVAKELPIKVT 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ +IQK +E+G I PV T+ + R + SAA+Q Sbjct: 80 LFQALPKGDKMETVIQKMIELGAYEIVPVFTKRCIVKLDNKKAVSKTKRWNSIAESAAKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILI 194 +P + P T + LK + ++ E +EN ++ I V I I Sbjct: 140 SKRGIIPKVSMPVTYKEALKMAEAMDMVLIPYEN--AENMAHTRQVVSQIKTGMTVGIFI 197 Query: 195 GPEGGYHSEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ EE E +++ + ++LG RILR++TA +A M+++ Sbjct: 198 GPEGGFAEEEVEQAINTGAY--DITLGKRILRTETAGMALMSVL 239 >gi|187477367|ref|YP_785391.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella avium 197N] gi|115421953|emb|CAJ48473.1| conserved hypothetical protein [Bordetella avium 197N] Length = 244 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F D PL + H+ VLR+++G I+LF+G+ GE+ +++ GK+ Sbjct: 3 LPRFFCDTPLAAGQRLALPEALAHHAIRVLRLRDGAVIVLFDGRGGEYPARLEIEGKTGY 62 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 ++ E+ +R + +++D++I+K+VE+G A+ R V+ Sbjct: 63 AQLAEHVAREAELPGRITLAQGLPSGDKMDWIIEKAVELGAAAVAPIAAQRSVLQLSGPR 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + R +AAEQC L + P++L L +++ E + L Sbjct: 123 LEKRLSHWRRIAQAAAEQCGRNRLTQVSAPSSLREWLAQPAQGARVMCHPEAA---DDLP 179 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 A P + +L+GPEGG+ SEE+ V + LG R+LR++TA +A +A V Sbjct: 180 GWLASQPAPEALTLLVGPEGGW-SEEELAAARAAGVASVRLGSRVLRTETAGLALIASVT 238 Query: 239 AICG 242 A+ G Sbjct: 239 ALLG 242 >gi|301154799|emb|CBW14262.1| predicted protein [Haemophilus parainfluenzae T3T1] Length = 244 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 23/243 (9%) Query: 15 PLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-Y 71 P +K Q + S D +++ VLRM EG+ I LF+G + + +KI K KVE Sbjct: 9 PKSLKNQSTCQLSEDAANHVGRVLRMTEGEQIELFDGSNHIYPAKIIEASKKA-VKVEIL 67 Query: 72 QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR- 128 K+S++ + + +R+++ IQKSVE+G+ I P+ +++ +D R Sbjct: 68 GCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPL---WSERCGVKLDGERM 124 Query: 129 --------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 I+A EQC +P I P L+ D ++ ++ S++ Sbjct: 125 DKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGALKLNLHPR---AQYSIKT 181 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L +I V +LIG EGG +E F T + LG R+LR++TA++AA++ +Q Sbjct: 182 LPSIPK-EGVRLLIGSEGGLSPQEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQIC 239 Query: 241 CGD 243 GD Sbjct: 240 FGD 242 >gi|282600332|ref|ZP_05973903.2| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541] gi|282565567|gb|EFB71102.1| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541] Length = 210 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95 M G I LF+G + + ++I+ K F S ++S + + + +++ Sbjct: 1 MSVGQKIELFDGSNHTFSAEITEATKKSVFVHIESSTLDDRESPLDIHLGQVMSRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKSVE+G+ I P+++ + + + + I+A EQC +P I P Sbjct: 61 FTIQKSVELGVNTITPLLSERCGVRLDGERLEKKLQQWQKIAIAACEQCGRNRIPEIRPV 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 +LE D +I S N+L A + +V +LIGPEGG +EE Sbjct: 121 QSLEAWCAENDGAFKINLHPRASHSVNTLP-----ADLKHVRLLIGPEGGLSTEEIAMTA 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 NYQF-TDILLGPRVLRTETTALTAITALQVRLGD 208 >gi|332662267|ref|YP_004445055.1| ribosomal RNA small subunit methyltransferase E [Haliscomenobacter hydrossis DSM 1100] gi|332331081|gb|AEE48182.1| Ribosomal RNA small subunit methyltransferase E [Haliscomenobacter hydrossis DSM 1100] Length = 285 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 7/213 (3%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQ-SRSQTKQSDVQYIFSPIKT 91 VLR G + + +GK + +++ +GK + R K+ Q ++Q K + +P K Sbjct: 76 QVLRYTPGRILSVVDGKGNWYEAELLELGKKLARAKINTQKQQTQRKPYHLHVAIAPTKN 135 Query: 92 -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 RL++ ++K+ E+G+ I P++ R+++ T DR+ T+SA +Q LP + P Sbjct: 136 IERLEWFLEKATEIGVDEITPILCRHSERTQVRQDRLEKITLSAMKQSLKTFLPRLNPLQ 195 Query: 151 TLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 L+ FL + + Q A T L++ + +V I+IGPEG + EE E Sbjct: 196 PLKTFLPAQANFSGQKCIAWITDPPAALLQQTYQRGQ--SVMIVIGPEGDFAPEEIELAT 253 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 F P+SLG LR++TA V A+ ++ + G Sbjct: 254 QCNFA-PVSLGQSRLRTETAGVVAVHTIELMNG 285 >gi|302385307|ref|YP_003821129.1| protein of unknown function DUF558 [Clostridium saccharolyticum WM1] gi|302195935|gb|ADL03506.1| protein of unknown function DUF558 [Clostridium saccharolyticum WM1] Length = 245 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRM G+ IL+ NG D ++L +I V + + K+ T+ Y Sbjct: 20 GPDVNHIKNVLRMGAGEEILVSNGVDKDYLCQILDVASAEVTAKILSVEEGGTELPARLY 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ +IQK+VE+G+ I PV T+ + + R R + SAA+Q Sbjct: 80 LFQGLPKGDKMELIIQKAVELGVYQIIPVETKRAVVRLDQKKEESKLRRWRAVSESAAKQ 139 Query: 138 CDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 L +P + T E L + + ++ + + E L +I +V I IGP Sbjct: 140 SGRLIIPEVAGVMTFPEALAFGKELDMIVIPFEHAKDMAKTKEILSSIRPGMSVGIFIGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ E + L ++LG RILR++TA +A ++++ Sbjct: 200 EGGFEDSEMDLAERLG-AKQITLGKRILRTETAGLAIVSVL 239 >gi|218246145|ref|YP_002371516.1| hypothetical protein PCC8801_1295 [Cyanothece sp. PCC 8801] gi|218166623|gb|ACK65360.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8801] Length = 239 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 16/239 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL ++ + + + +Q HYL VLR+K GD + +G+ +L+++ I Sbjct: 3 RLVIESIQTLDQSVRLTPEQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEEDSAKI--- 59 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 +E + + + K N + +++ E+G+ + P+I++ T + + + ++R Sbjct: 60 LENLKECTELPLAITLMVALPKGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKLER 119 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R A EQ + +P I P L+N D +I C + H + H Sbjct: 120 WRKIATEAGEQSERQLIPTIVDPIVFNEALRNID---KIPSDRYICVTRKKAH--HLLTH 174 Query: 187 IPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + I G EGG+ EE ET + F P++LGPRILR+ TA + A++L ++ Sbjct: 175 LSETSQNPLVIATGCEGGWTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSLAVSV 232 >gi|302871657|ref|YP_003840293.1| hypothetical protein COB47_1006 [Caldicellulosiruptor obsidiansis OB47] gi|302574516|gb|ADL42307.1| protein of unknown function DUF558 [Caldicellulosiruptor obsidiansis OB47] Length = 243 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + +++ VLR +EGD I L +G + ++ S+I V K + K+ +S++ + + IF Sbjct: 22 EDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKD-KIKLLIESKTLNDRESTKNIF 79 Query: 87 ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138 IK ++D+++QK+ E+G+ I PV+++ ++ +DR R A +QC Sbjct: 80 LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDVSEKEEKKLDRWRKIAQEAQKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I P + + + + I+F E S L + + N+ ILIGPEG Sbjct: 140 LRPKPPLIEMPIRISEIKEKYLDKLDILFIPYEKELETSRWSLSS--NYNNIGILIGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE E L + V +SLG RILRS+TA++AA++++ G+ Sbjct: 198 GFEEEEVEELKTFKNVQVISLGKRILRSETASIAALSILMHELGE 242 >gi|291166400|gb|EFE28446.1| RNA methyltransferase, RsmE family [Filifactor alocis ATCC 35896] Length = 247 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 32/252 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAH---VLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R +VD P + A D + H VLR GD + +F+ GE+++KIS + Sbjct: 1 MDRFYVDHPF----KEHAFLDDIEEIKHITKVLRFSVGDYVEIFDSVQGEYIAKISAIDS 56 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 K I F ++ + ++K + ++ I K +R++++IQKS E+G+ I PV + + Sbjct: 57 KRIYFDIQ-KELPKSKSNIFVTLYQGIAKGHRMEFLIQKSTELGVDTIIPVRFQRSVAKL 115 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF------LLKNWDHNCQIVFADE- 170 + + R + A++QC + + ++F LLKN + + F +E Sbjct: 116 EKDDKKIQRWNKICLEASKQCKRNKISCV--KNAIDFSELSSELLKN---DLNLFFYEEE 170 Query: 171 ---TCGS--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 T S + L ++ + + ++ I++GPEGG +EK+ L S + LSLG RILR Sbjct: 171 HNLTLKSYLKEQLNRIKVLQNGVSIGIIVGPEGGITEQEKDILVS-EGIPSLSLGKRILR 229 Query: 226 SDTAAVAAMALV 237 ++T +VA ++++ Sbjct: 230 TETVSVAVLSML 241 >gi|293400698|ref|ZP_06644843.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305724|gb|EFE46968.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 258 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 12/241 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ PL + + +Q H++ HV+RMK + I L +GK + + + + + Sbjct: 1 MQQYFLHKPLQVHDLVEMEPEQAHHIQHVMRMKPDEIIRLADGKGHMYYAHVVFRDHKVF 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY----TQNT 120 V+ + T+ + V I + IK + D+++QKS E+G+ I P + T++ Sbjct: 61 ACVDEEMEDHTR-TPVDMILAQGLIKKEKWDFLLQKSAELGVQRIIPFTSSRTVVKTKDE 119 Query: 121 HYNMDRVRTYTI--SAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIV-FADETCGSEN 176 + R+R I A EQC TL + P + L+K + D + +++ + S + Sbjct: 120 KVDKKRLRWNKILQEACEQCKRSTLVALDSPKSFAELIKASEDADVKLIAYERADVKSAH 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L V I++G EGG+ +E L + F +SLG RILR++TAA++ +A Sbjct: 180 VKEVLQKYPAPHKVFIVVGCEGGFSEDEVIQLEEVGF-HRVSLGARILRAETAALSLLAC 238 Query: 237 V 237 + Sbjct: 239 I 239 >gi|220932114|ref|YP_002509022.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H 168] gi|219993424|gb|ACL70027.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H 168] Length = 249 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 120/236 (50%), Gaps = 25/236 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV------GKSIRFKVEYQSRSQTK 78 G+ Y+++ + LR+ GD +++ G ++++ I + GK I+ EY++R++ Sbjct: 19 KGNDYNHIVNSLRLNPGDKLIVCPGNCRDYVATIEEIKENQITGKIIK---EYKNRNEPS 75 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 + P K ++D +IQK+ E+G+ +I P+ T T + DR + Sbjct: 76 LNITLAQALP-KKRKMDLVIQKATEIGVRSIIPLKTTRTIVRLNKKKERKKTDRWQKIAK 134 Query: 133 SAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAIAHI 187 AA+Q I T+ +Y L N+D I+ +E G +N L ++ ++ I Sbjct: 135 EAAKQSGRGRIPTVERVYSLKELTQFKSNFD--LIIIPWEEEQGKNLKNVLSTVN-VSEI 191 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + ++IGPEGG+ EE + + L + P++LGPRILR++TA + + ++ GD Sbjct: 192 SKILVIIGPEGGFPPEEIKFIEQLGGI-PITLGPRILRTETAGLVVLTMLLYESGD 246 >gi|309388922|gb|ADO76802.1| protein of unknown function DUF558 [Halanaerobium praevalens DSM 2228] Length = 253 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67 R F+D I + SG+ Y++L + LR+ GD ++L +G + ++I +Y +S Sbjct: 3 RFFIDQSTEIGKKVFISGNDYNHLKNSLRLDLGDRVILSDGNGFDLEAEIITYQTESAEL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH 121 K+ + +S+ + ++ + K +++D +++K+ E+G + P+ I +Y Q Sbjct: 63 KILTKEKSKVEPKIKVWLAQGLPKKSKMDLIVEKATEIGFSGLIPLESKRTIVKYNQKKK 122 Query: 122 YNM-DRVRTYTISAAEQCDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENS 177 R + +AA+Q +P I ++ + +D+ +++ DE + S Sbjct: 123 AKKRSRWQRVAEAAAKQSGRAVIPKIKNFCNSNNIKSFKEKFDY-VLVLWEDEKKTTIKS 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 K + IA + ++IGPEGG+ E ++LGPRILR++TA + A+ + Sbjct: 182 FFKENEIAAEAKILLIIGPEGGFSEAEVNRFEQKLEAEIITLGPRILRTETAGIVALTAI 241 Query: 238 QAICGD 243 + G+ Sbjct: 242 LSEKGE 247 >gi|260913267|ref|ZP_05919749.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325] gi|260632854|gb|EEX51023.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325] Length = 244 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 17/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQ 83 S D +++ VLRM+ G+ + LF+G + + + I+ V K VE S+ ++S ++ Sbjct: 21 SEDAANHVGRVLRMQVGEQLELFDGSNHTYAATITQVSKKA-VTVEILSQQLDDRESHLK 79 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISA 134 + + R+++ IQKSVE+G+ I P+ + + DR+ + I+A Sbjct: 80 IHLGQVISRGERMEFTIQKSVELGVSVITPLWSERC-GVKLDADRMEKKIQQWQKIAIAA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P L+ D ++ + ++ S+ L AI V +LI Sbjct: 139 CEQCGRNVIPEIRPLMRLQDWCAEKDGALKLNLHPK---AQYSIRTLPAIPE-EGVRLLI 194 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G EGG +E F T + LG R+LR++TA++AA++ +Q GD Sbjct: 195 GSEGGLSPQEISQTEQQGF-TEVLLGKRVLRTETASLAAISALQICFGD 242 >gi|189219856|ref|YP_001940497.1| hypothetical protein Minf_1845 [Methylacidiphilum infernorum V4] gi|189186714|gb|ACD83899.1| Uncharacterized conserved protein [Methylacidiphilum infernorum V4] Length = 217 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 11/206 (5%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 +R K GD I +F+GK W +KI + + E + S +K+ + I S +K Sbjct: 1 MRHKIGDLIEVFDGKGSSWEAKIEKIENHQVFVSLLREIKEDSPSKKPLLVLIQSVLKNK 60 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 + +++QK E+G+ I PVI++ + + + I+AA+Q LP ++ Sbjct: 61 AMHWLLQKVTEIGVDRIIPVISKRSLSAVEEGQQLKEKKWNEILIAAAKQSHRRKLPELF 120 Query: 148 PPTTLEFLLKN-WDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + L LK + + ++V F + S + + ++ ++ +V ILIGPEG + EEK Sbjct: 121 KISLLADALKEGFPSSLKLVAFLGKEARSLKEVMQCYSSRNVSSVVILIGPEGDFTGEEK 180 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAV 231 + + F+ P+SLG ++LRS+TAA+ Sbjct: 181 NMVLNQGFI-PVSLGNQVLRSETAAL 205 >gi|254447345|ref|ZP_05060811.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium HTCC5015] gi|198262688|gb|EDY86967.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium HTCC5015] Length = 245 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 16/245 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRF 67 RL+ D L + + H+L VLR +G +LLFN + D E+ +++ K Sbjct: 5 RLYCDQVLNVGDEVTLDAVTSHHLCTVLRAHQGSIVLLFNNREDAEYEAELIKPHKK-NA 63 Query: 68 KVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THY 122 V R + + YI + +R+D+ IQK+ EMG I PV+ +Q + Sbjct: 64 CVRLTQRVECFRESSLYIHLYQGVSRGDRMDFAIQKATEMGAHEITPVLCERSQIKLSGE 123 Query: 123 NMDRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++ R + ISA +Q L + + L D +F D ++ S Sbjct: 124 RGEKKRAHWQQIIISACQQSGRCRLAKLNAVQHFQEALLQRDAQSVGLFLD----TQTSQ 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 A+ V + IGPEGG+ E + + +SLGPRILR++TAA+AA+ Q Sbjct: 180 SGDAALRQAQRVDLWIGPEGGFDPTEVQAAQDQGLAS-VSLGPRILRTETAAIAALTYCQ 238 Query: 239 AICGD 243 I GD Sbjct: 239 LISGD 243 >gi|262193422|ref|YP_003264631.1| hypothetical protein Hoch_0097 [Haliangium ochraceum DSM 14365] gi|262076769|gb|ACY12738.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365] Length = 250 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 24/235 (10%) Query: 9 RLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIR 66 RLFV+ P ++ + GD + YL V R++ GD + LF+G E ++++ + G+ + Sbjct: 4 RLFVE-PASLRAGAVEVCGDDHRYLFRVRRLRVGDAVTLFDGAGREADARVAAIDGERAQ 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 +V + R+ S + P IK +R+D+ +QK VE+G+ I PV + T + Sbjct: 63 LEV-AEPRAVVAPSPCRVSVLPALIKGDRMDFCVQKLVELGVHEIAPV---TSARTVVKL 118 Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCG 173 D R +AA QC+ T+P I LE L + I++A E Sbjct: 119 DGARAARRRERFVDIARAAARQCERATVPEIAAIAPLEQALASRAQTPLKLILWARE--- 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + A V + +GPEGG+ EE E + F P+ LG +LR++T Sbjct: 176 RSRMLRDIVAQPLPAGVCVAVGPEGGFAPEEIEAAVAAGF-EPVGLGGHVLRAET 229 >gi|313905332|ref|ZP_07838698.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6] gi|313469802|gb|EFR65138.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6] Length = 246 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IR 66 R F I + +GD +++ +VLRMK+G+ IL+ G + E+ IS + + + Sbjct: 3 RFFTGREQIIDGKVHITGDDVNHIRNVLRMKKGETILISCGDEWEYTCSISELSEDEILA 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 + Q + +S + Y+F + K+++++ +IQK+VE+G + PV ++ + Sbjct: 63 DVTDAQKPGKELRSKI-YLFQCLPKSDKMETVIQKAVELGAFEVVPVSSKRCIVKLDQKR 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178 + R SAA+Q + +P ++ E L + + +++ + G + Sbjct: 122 GKQKVARWNGIAESAAKQAKRMIIPTVHEILGFREALEMAKEMDVKLIPYEMESGMSRTR 181 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E +I ++A+LIGPEGG+ E E F + ++LG RILR++TA + ++++ Sbjct: 182 EIFSSIEPGQSIAVLIGPEGGFDEAEVELAKEAGF-SSITLGRRILRTETAGMTTLSIL 239 >gi|308272138|emb|CBX28745.1| hypothetical protein N47_L13430 [uncultured Desulfobacterium sp.] Length = 259 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 125/250 (50%), Gaps = 20/250 (8%) Query: 9 RLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RLF I +Q A G ++ +VLR+K GD+I LF+ ++ ++I V S R Sbjct: 2 RLFYIDQSEIASQNPAIKGSDARHIINVLRLKPGDHIELFDESGIKYKARIVAVS-SARV 60 Query: 68 KVEYQSRS-QTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V +S QT +S ++ I S +K ++D +I++ E+G+ P I+ + + Sbjct: 61 EVSVVGQSNQTVESFLEIIVAQSFLKEAKMDNLIRQLTELGITKWIPFISERSVSRPDDK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177 R + AA+QC I + + LL++ + + +I+F + +N Sbjct: 121 RLLNRSKRWESIAKEAAKQCKRAKTTIIEKTVSFKELLESKQEFDLKIIFWE---NEKNL 177 Query: 178 LEKLHAIA----HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L+ + A I + I++GPEGG+ E E F+T LGPRILR++TA+V+A Sbjct: 178 LDIKNLTATHQKDINKILIILGPEGGFTISEIEKAKESGFLTA-GLGPRILRAETASVSA 236 Query: 234 MALVQAICGD 243 L+Q + GD Sbjct: 237 CTLIQFLFGD 246 >gi|329896498|ref|ZP_08271556.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC3088] gi|328921715|gb|EGG29088.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC3088] Length = 216 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 18/219 (8%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTN 92 VLR+K G + LFNG + ++ K I +++ +S ++ + K + Sbjct: 4 VLRLKTGAPLELFNGDGNNYQCELLDSAKRIATIRVLSAKANPTESSLRSRLGIVVSKGD 63 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-------YTISAAEQCDILTLPF 145 R+D+++QK+ E+G+ I P +T + N +R +SA EQ +P Sbjct: 64 RMDFVVQKATELGIHEIYP-LTSERCDVKLNAERAEKRQQHWSKVAVSACEQSGRSVIPR 122 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 I P ++ + + + + V ++ E +VAIL+GPEGG E Sbjct: 123 IAPIQSIHQWISEVNADLKWVLHHRASAEKSPTEA-------QSVAILVGPEGGLSETEV 175 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E F+ P LGPR+LR++TA + A++++Q GD+ Sbjct: 176 ELALQHKFI-PTVLGPRVLRTETAPLVALSVLQQRYGDF 213 >gi|126652831|ref|ZP_01724976.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905] gi|126590367|gb|EAZ84487.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905] Length = 245 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 112/244 (45%), Gaps = 17/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ + + SG+ ++ V+RMK+GD I++ + + G + Sbjct: 1 MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIVVVAQNIAHICTITGFEGDEVV 57 Query: 67 FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119 ++ ++ + K ++L+ + QK+ E+GM A++P ++ + Sbjct: 58 VDATGETIPSSELPIQITVACGLPKGDKLELITQKATELGMFALQPFEAERSIVKWDKKK 117 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-- 177 +R++ AAEQ +P +Y P T + LL D + ADE Sbjct: 118 GAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLHEIDQFDAVFIADEEDAKAEKRT 177 Query: 178 --LEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +KL + + ++ I+ GPEGG +E E L T +SLGPRILR++TA + A Sbjct: 178 RFADKLRLVHDQKLTSMLIIFGPEGGISRKESEALLQAGAQT-MSLGPRILRAETAPLYA 236 Query: 234 MALV 237 ++ + Sbjct: 237 LSAI 240 >gi|299065688|emb|CBJ36861.1| putative ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum CMR15] Length = 249 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 17/251 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R +D PL T ++ HVLR+ GD I LF+G E+ +++ + + R Sbjct: 3 LPRFHIDSPLAPHTTVTLPESVTRHI-HVLRLAVGDEICLFDGSGQEFRARLDAINR--R 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRPVITR---YTQN 119 + + ++ +Y + + +++D++I+K+VE+G+ AI P+ T + Sbjct: 60 DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLS 119 Query: 120 THYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + RV+ + +A EQC +P + P L L + + GS+ Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPTVSPVAPLRDWLAAAKASERARVMLSPRGSQP 179 Query: 177 SLE-KLHAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + + I + I LIGPEGG S ++E L PL+LG RILR+++AA+ A Sbjct: 180 LTQWAVQSRGRIGSAGIELLIGPEGGL-SPDEEALAEAAGYLPLTLGRRILRTESAALVA 238 Query: 234 MALVQAICGDW 244 ++ + A+ G++ Sbjct: 239 VSALHAVLGEF 249 >gi|295097485|emb|CBK86575.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 248 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 18/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80 S D +++ VLRM G I LF+G + + ++I+ K S+ KV E R Sbjct: 26 SDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKSVHVKVLRGEVDDRESPLHI 85 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134 + + S + ++++ IQKS+E+G+ I P+ + + + + + + I+A Sbjct: 86 HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAIAA 143 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQ +P I P LE + ++ S N+L + V +LI Sbjct: 144 CEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 198 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 199 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 246 >gi|37525153|ref|NP_928497.1| hypothetical protein plu1185 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784579|emb|CAE13479.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 243 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 14/227 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 S + +++ VLRM G + LF+G + + ++I+ K S++ + + + Sbjct: 21 SDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAQITEASKKSVKVHISNSELADNESPLNL 80 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 ++ I + ++++ IQKSVE+G+ I P+I+ + + + + I+A E Sbjct: 81 HLGQVISRGEKMEFTIQKSVELGVNVITPLISERCGVKLDGERLAKKLQQWQKIAIAACE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +P I P LE D + ++ S N+L + V +LIGP Sbjct: 141 QCCRNRVPEIRPVMQLEHWCAENDGSLKLNLHPRASQSINTLP-----LPVEKVRLLIGP 195 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG +E + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 196 EGGLSIDEIAMTANYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|317122986|ref|YP_004102989.1| hypothetical protein Tmar_2182 [Thermaerobacter marianensis DSM 12885] gi|315592966|gb|ADU52262.1| protein of unknown function DUF558 [Thermaerobacter marianensis DSM 12885] Length = 252 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 19/249 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 +FVD L + D H+L VLR GD ++ + WL ++ V Sbjct: 6 VFVDRELEPGARAPLPADDAHHLLRVLRRGPGDQVVAVSPGGCRWLGQLE---PGTPPHV 62 Query: 70 EYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 Q R + + + K +++ +++ E+G+ PV+ + Sbjct: 63 VAQERLPSSEPPLHVTLGQGLPKGPKMEEVVRHGTEVGVSRFVPVLAARSVSRPEADAAA 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSL 178 + R + AA Q +P + PP LE LL WD +E+ G L Sbjct: 123 RRLQRWQRIAREAARQAQRSAVPQVDPPRPLEGLLAEEGPWDLILMPWEEEESRGLREEL 182 Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E + A+ P V +L+GPEGG+ E E ++LGPRILR++TA V Sbjct: 183 EAVAAVWGRPAAGRRVLVLVGPEGGWDPAEVEAARRA-GARVVTLGPRILRTETAGVLVA 241 Query: 235 ALVQAICGD 243 LV + GD Sbjct: 242 GLVLHVLGD 250 >gi|126660243|ref|ZP_01731359.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110] gi|126618482|gb|EAZ89235.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110] Length = 241 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 6/221 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +Q HYL +VLR+KE ++ +G++ +++KI+ I ++ Q+ +V + Sbjct: 22 EQKHYLKNVLRLKEDSQFIVVDGQNNTYIAKINDDNGQIIEQLNEQTELPI---NVTLMI 78 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 + K D +I+ E+G+ I PVI++ T + + + ++R R A EQ + +P Sbjct: 79 ALPKGKGFDEVIRSCTELGINTIIPVISQRTLLKPSSHKLERWRKIVKEATEQSERQLVP 138 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 I P + LK Q + T L ++ I G EGG+ +E Sbjct: 139 NILEPISFSEALKKVKQTNQNYYICVTRKKAKHLLTYLLETTTNSITIATGCEGGWTEKE 198 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 + F+ P++LGPRILR+ TA + ++LV ++ ++ Sbjct: 199 INEAINSGFI-PVTLGPRILRAVTAPLVTLSLVASVTEKYH 238 >gi|154504512|ref|ZP_02041250.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149] gi|153794994|gb|EDN77414.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 116/222 (52%), Gaps = 10/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 G +++ HVLRMK G+ + + + + ++L +I + + + + Q S T+ S Sbjct: 19 EGTDVNHIVHVLRMKVGEEVSVHDDVNRKYLCRIEKLLEERVVLSIVEQQESDTELSCPI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K ++++++IQK VE+G+ AI PV T+ + ++R SAA+ Sbjct: 79 YLFQGLPKGDKMEWIIQKCVELGVHAIVPVATKRAVVKLDEKKAQKKVNRWNAIAESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + P + L+ + +++ ++ G + + + +++ +V I IG Sbjct: 139 QSGRGIVPEVLPVMKWKEALEYARQLDVKMIPYEKAAGINATKQLIASVSFGQSVGIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ E E + V P++LG RILR++TA + ++++ Sbjct: 199 PEGGFEEAEVEAAKEIGAV-PVTLGRRILRTETAGMTILSIL 239 >gi|147677216|ref|YP_001211431.1| 16S ribosomal RNA methyltransferase RsmE [Pelotomaculum thermopropionicum SI] gi|146273313|dbj|BAF59062.1| Uncharacterized protein conserved in bacteria [Pelotomaculum thermopropionicum SI] Length = 249 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 9/227 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G ++ VLR+ GD + + +G+ + + I G + + + V Sbjct: 19 TGPDVVHITRVLRLGRGDCLTVLDGRGRSYEAVIEKAGAAEVVCVAGSVTAAGGLPAVKV 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + +++D+++QK E+GM + P+I R + + ++R R + A++ Sbjct: 79 TLVQGIPRGDKMDFIVQKGTELGMHRLIPLICRRSVVKLEGDKSFRRLERWRRIALEASK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +P + P + +L + E E + L V + IGP Sbjct: 139 QCRRPDVPEVDAPAGWDRVLAGMPPEAAALIPWEEEDGETLKDFLRRSLPKEEVYVFIGP 198 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG+ E + ++ V P++LGPRILR++TA +A + +V GD Sbjct: 199 EGGFDPGEVDKARAV-GVRPVTLGPRILRTETAGLAVLVMVLYQWGD 244 >gi|300703042|ref|YP_003744644.1| ribosomal RNA small subunit methyltransferase e (rsme) [Ralstonia solanacearum CFBP2957] gi|299070705|emb|CBJ42000.1| putative ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum CFBP2957] Length = 249 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 114/228 (50%), Gaps = 24/228 (10%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT-- 91 HVLR+ GD++ LF+G E+ +++ + + R + + ++ +Y + + Sbjct: 29 HVLRLAVGDDVQLFDGSGLEFRARLDAINR--RDVTASLADATQPDTEARYAITLAQGIA 86 Query: 92 --NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 +++D++I+K+VE+G+ AI P+ T + + + + +A EQC + Sbjct: 87 GGDKMDWLIEKAVELGVHAIAPLQTERSVVRLSGERAAKRVQHWQALVQAACEQCGRARV 146 Query: 144 PFIYPPTTLE--FLLKNWDHNCQIVFADE-----TCGSENSLEKLHAIAHIPNVAILIGP 196 P + P TTL + +++ + T + S E++ + + +LIGP Sbjct: 147 PAVSPVTTLRDWLTVAKASDRARVMLSPRGSQSLTQWAAQSRERIDS----AGIELLIGP 202 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG S ++E+L PL+LG RILR+++AA+ A++ + G++ Sbjct: 203 EGGL-SPDEESLAEAAGYLPLTLGRRILRTESAALVAVSALHTALGEF 249 >gi|323704198|ref|ZP_08115777.1| protein of unknown function DUF558 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536264|gb|EGB26036.1| protein of unknown function DUF558 [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 12/248 (4%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S ++RLF+ + GD H++ VLR++ G ++++ NG S +S S Sbjct: 2 SAVRRLFIKDEDIKDGIVRIYGDDAHHIKDVLRLRIGTDLVVSNGVKQYNASILSIESTS 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + K+ + + S +F + K++++D ++QK E+G+ I PV T ++ Sbjct: 62 VLLKIVDELHQVVESSINVTLFQGLPKSDKMDLIVQKCTEIGIKKIVPVETEFSIIKVKE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSE 175 ++ ++R + A++Q L +P + P + + N C + + ET Sbjct: 122 KSIGNKINRWNKISQEASKQSGRLIVPEVLEPISFTIAVNYINEFDLCVMPYERETNVRL 181 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + K + A N+ I IGPEGG+ E +T V ++LGPRILR++TA + A + Sbjct: 182 KDVLKENNGAK--NICIFIGPEGGFSHSEVDTATKNGAVI-VTLGPRILRTETAGIVAGS 238 Query: 236 LVQAICGD 243 ++ GD Sbjct: 239 IILYELGD 246 >gi|254180624|ref|ZP_04887222.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655] gi|184211163|gb|EDU08206.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655] Length = 255 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 30/259 (11%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + R ++ EQC LP I L++ +D + A G Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIA-------LVRGFDAWLDALPATPADGE 177 Query: 175 ENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L A A +P +V +LIGPEGG +E++ + F LSLGPR+LR Sbjct: 178 LRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLR 236 Query: 226 SDTAAVAAMALVQAICGDW 244 ++TA A +A + A G W Sbjct: 237 TETAGAAVLAALAARWGGW 255 >gi|296133940|ref|YP_003641187.1| protein of unknown function DUF558 [Thermincola sp. JR] gi|296032518|gb|ADG83286.1| protein of unknown function DUF558 [Thermincola potens JR] Length = 249 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV Q G +++ VLRM+ GD + L + E+ ++I+ + R Sbjct: 1 MARFFVKDEQVKGVQVFIVGSDVRHISKVLRMRPGDCLTLIDEAGTEYEARITQIAPE-R 59 Query: 67 FKVEYQSR-SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 E + S ++ ++ I K ++L+ +IQK VE+G+ I R V+ Sbjct: 60 ITCEIVTETSVNREPPLEVILCQGLPKGDKLELIIQKGVELGVTRIIPVSCTRSVVQLTE 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +R + + AA+QC +P + P T + L+ V E Sbjct: 120 EKAAKRRERWQRVALEAAKQCRRNKVPEVSPLTGFDEALQLIPDGVLAVIPWEDAVGTGL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L + + V I IGPEGG+ E E V P++LG RILR++TA +AA+ +V Sbjct: 180 KKVLRSYNNRGQVWIFIGPEGGFTEAEIEKAKG-KGVVPVTLGRRILRAETAGIAAITMV 238 Query: 238 QAICGD 243 GD Sbjct: 239 LYQLGD 244 >gi|312898001|ref|ZP_07757410.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis F0359] gi|310620926|gb|EFQ04477.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis F0359] Length = 243 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 119/242 (49%), Gaps = 17/242 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 +++LF DFP I+ + S + ++ VLR GD + + +G + I+ Sbjct: 1 MRKLFTDFP--IEGEFYLSPEDSRHVVRVLRHVTGDVLTVSDGTGIAYTCLIADTAGERA 58 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R + +T++ ++ + +K +R D+++QK+ E+G+ + P+ ++ Sbjct: 59 LMRPLKKIVPEDETERHELILAAALLKNDRFDWLVQKATELGVDRVVPIQMKHCVVKLDE 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSEN 176 + R + + AA+QC +P + TL+ L++ +D + + E + Sbjct: 119 KRRKERCARWQKIALEAAKQCGRTRVPSVDEVRTLKELIQEYDRYFFFIPYEGEEKAARI 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++E+ A + I IGPEGGY EE E L S +SLG RI+R++TAA+AA + Sbjct: 179 AVER----AAGEDTVICIGPEGGYAPEEIEELTSSCEQYAVVSLGKRIMRAETAALAACS 234 Query: 236 LV 237 ++ Sbjct: 235 VI 236 >gi|134280575|ref|ZP_01767286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 305] gi|134248582|gb|EBA48665.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 305] Length = 255 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + ++++++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMEWVIEKAVELGVAAVAPLSTARGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + + R ++ EQC LP I P + L D +++ + Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240 Query: 230 AVAAMALVQAICGDW 244 A +A + A G W Sbjct: 241 GAAVLAALAARWGGW 255 >gi|312144013|ref|YP_003995459.1| protein of unknown function DUF558 [Halanaerobium sp. 'sapolanicus'] gi|311904664|gb|ADQ15105.1| protein of unknown function DUF558 [Halanaerobium sp. 'sapolanicus'] Length = 250 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 119/240 (49%), Gaps = 14/240 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKS 64 + + F+ I + G+ Y++L + LR+ GD +++ + KDG L +S+ +S Sbjct: 1 MNKFFIKDSAAIGEKISIQGNDYNHLKNSLRLNIGDRVIV-SDKDGFDLEAKIVSFQEES 59 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQ 118 +V + +S + Q +V K ++D +++K+ E+G A+ P+ I RY Sbjct: 60 AELEVINREKSSVEAQLNVVLAQGLPKKRKMDLIVEKATEIGFKAMIPLESERSIVRYNH 119 Query: 119 NTHYNMD-RVRTYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVFADETCGS 174 R + +AA+Q +P I Y ++L+ L +D I++ DE S Sbjct: 120 KKKEKKLKRWQRVAEAAAKQSGRSIIPEIKNFYSTSSLKDLKDQFDFRL-ILWEDENKFS 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + + ++ ++IGPEGG+ +E E L + ++LGPRI+R++TA +AA+ Sbjct: 179 LKNFFNQNNVKSDASILLIIGPEGGFSEDEVEKLKNDLDAETITLGPRIMRTETAGIAAL 238 >gi|258516359|ref|YP_003192581.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum acetoxidans DSM 771] gi|257780064|gb|ACV63958.1| protein of unknown function DUF558 [Desulfotomaculum acetoxidans DSM 771] Length = 257 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 119/249 (47%), Gaps = 14/249 (5%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++V P IK Q +G + ++ VLR+ GD + + +G+ G + ++I+ K Sbjct: 1 MTRVYVP-PTRIKGRQACITGTEMEHVNRVLRLAAGDEVTIIDGEGGVFSARITGKNKEK 59 Query: 66 RF-KVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 F ++ + + + + K++++D ++QK E+G+ + R ++ Sbjct: 60 VFCEITAEGLPDNEPPVKITLVQGLPKSDKMDLIVQKGTELGLSTLIPLQCERAIVRLDE 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSE 175 + +R + + AA+QC P + + + +L++ C + + +ET Sbjct: 120 KKAAQRQERWQRIAMEAAKQCKRGKHPSVERAMSWQEVLESLPEKALCLLPWEEETARGL 179 Query: 176 NSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 SL + L A + I IGPEGG+ E V P+SLGPRILR++TA +A + Sbjct: 180 KSLRDNLEAKVPPFEIYIFIGPEGGFTRSEAAQARQY-GVIPVSLGPRILRTETAGIAVL 238 Query: 235 ALVQAICGD 243 +++ GD Sbjct: 239 SIIMYEFGD 247 >gi|332878544|ref|ZP_08446264.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683445|gb|EGJ56322.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 242 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 19/224 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++A VLR K+GD + + NGK + ++S+ K + + + + Sbjct: 21 EESQHIAKVLRKKQGDTLHITNGKGFLFEGQLSFASPKQCEVSILKCQEQIHRPYHLHLV 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P+I ++++ T ++R +SA +Q LP Sbjct: 81 VAPTKMNERYEWFLEKATEIGIDEITPIICQHSERTSLKLERFEKIILSAMKQSLQCYLP 140 Query: 145 FIYPPTTLEFLLKN--------WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 + P T K + +CQ +E N+L L + ILIGP Sbjct: 141 TLNSPITSAAFFKQMMTDTSDKYIAHCQ---ENEKILLSNALTPLSE-----RITILIGP 192 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 EG + EE T + F P+SLG LR++TAA+ A V + Sbjct: 193 EGDFSEEEISTAIAQGF-RPISLGDTRLRTETAAIVACHTVLTV 235 >gi|225568735|ref|ZP_03777760.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM 15053] gi|225162234|gb|EEG74853.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM 15053] Length = 245 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 114/221 (51%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK G+ + + +G + ++L + Y K+ + S T+ + Sbjct: 20 GQDVNHMKNVLRMKPGEELTVSDGDNRKFLCAVDRYEEGQAVLKICREEMSDTELASRIC 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ ++QK+VE+G+ + PV+TR + + ++R ++ SA++Q Sbjct: 80 LFQGLPKQDKMELIVQKAVELGVSEVVPVMTRRSVVRLDEKKAARKVERWQSIAGSASKQ 139 Query: 138 CDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + P E L + + ++ + G + + + +I +V + IGP Sbjct: 140 AGRGYIPKVAPVAGFGEALRQASAMDVLLIPYELAEGMQETKRVISSIVPGQSVGVFIGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ EE E L P++LG RILR++TA + ++++ Sbjct: 200 EGGFEREEVE-LAVEAGAVPITLGRRILRTETAGLTTLSVL 239 >gi|189424061|ref|YP_001951238.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter lovleyi SZ] gi|189420320|gb|ACD94718.1| protein of unknown function DUF558 [Geobacter lovleyi SZ] Length = 249 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%) Query: 8 KRLFVDFPLCIKTQGKAS--GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-- 63 +R F+ I+ G AS G Q+H++A VLR++ GD ++L + + L I V + Sbjct: 4 RRRFIVSSRSIR-DGYASYDGPQHHHMARVLRLRSGDEVMLIDEQGRRHLGVIDQVTQEW 62 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRY 116 ++R ++ + I K +++ ++QK E+G+ A R V Sbjct: 63 TAVRLTETLEASQFPDAPAITVIQGLPKGEKIELVLQKGTELGVSEFSIFRADRSVPKLA 122 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++R AA Q + P + + P+ + +++ + G+ Sbjct: 123 GDKLQGRIERWNRIVAEAARQSERFDQPTVAWHPSAAAAAAGAANAELKLLLWER--GAP 180 Query: 176 NSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L E L + +AI IGPEGG+ E E F TP++LG RILR++TAA+A Sbjct: 181 TPLREVLEGMPRPARIAIAIGPEGGFEPGEAEAFSFWGF-TPVTLGERILRTETAALAMT 239 Query: 235 ALVQAICGD 243 A+VQ GD Sbjct: 240 AIVQYKWGD 248 >gi|289434752|ref|YP_003464624.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170996|emb|CBH27538.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 255 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKS 64 ++R F+D + + + + +G+ +H++ V+RMKEGD + ++F IS + Sbjct: 1 MQRYFIDKTIENELEPIRITGENFHHMTRVMRMKEGDQVFIVFPSNQTAIAKIISIAAEE 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGM------GAIRPVITRYT 117 + V+ T+ I S + K ++L+Y+IQKS E+G A R V+ Sbjct: 61 VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPYKAERSVVKWEE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GS 174 + +DR++ AAEQ +P ++ +L E LL N + +V +E+ G Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNKQFDYIVVAYEESAREGE 180 Query: 175 ENSLEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + L L +PN ++L+ GPEGG +E L L V LGPRILR++TA + Sbjct: 181 DRMLASLFK-ETVPNQSVLVIFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLY 238 Query: 233 AMA 235 ++ Sbjct: 239 VLS 241 >gi|309775549|ref|ZP_07670549.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 3_1_53] gi|308916643|gb|EFP62383.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 3_1_53] Length = 254 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 10/218 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 + +Q H++ V+RM++GD I + + L+++ + ++ + + +K S V+ Sbjct: 26 TSEQAHHIRRVMRMQQGDVIRVADNSGQIMLAEVEFQKDGVQAHILKELCDHSKTS-VEL 84 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + IK + DY++QKS E+G I P ++ T R A E Sbjct: 85 VLAQGMIKGEKWDYLLQKSAELGAAEIIPFVSSRCVVKIKDDKTEKKTARWNKILCEACE 144 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC TL + P L + I + D SE + L A I V +++G Sbjct: 145 QCKRSTLVQLKEPCAFSDLKEIPADLRLIAYEDADQCSERLCDVLRAHPSIRRVLMVVGS 204 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 EGG+ +EE L S F +SLG RILR++TAA++ + Sbjct: 205 EGGFSAEEVAELVSCGF-HRVSLGGRILRAETAALSLL 241 >gi|312127404|ref|YP_003992278.1| hypothetical protein Calhy_1189 [Caldicellulosiruptor hydrothermalis 108] gi|311777423|gb|ADQ06909.1| protein of unknown function DUF558 [Caldicellulosiruptor hydrothermalis 108] Length = 243 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + +++ VLR +EGD I L +G + ++ S+I V K R K+ +S++ + + IF Sbjct: 22 EDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKD-RIKLLIESKTLNDRESTKNIF 79 Query: 87 ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138 IK ++D+++QK+ E+G+ I PV+++ ++ ++R R A +QC Sbjct: 80 LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISEKQEKKVERWRKIAQEAQKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I P + + + + I+F SE S + + N+ ILIGPEG Sbjct: 140 LRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS--EWCISSDYNNIGILIGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE E L + V +SLG RILRS+TA++AA++++ G+ Sbjct: 198 GFEEEEIEELKTFKNVQVISLGKRILRSETASIAALSILMHEVGE 242 >gi|299535791|ref|ZP_07049112.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1] gi|298728991|gb|EFI69545.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1] Length = 264 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 17/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ + + SG+ ++ V+RMK+GDNI++ + + G + Sbjct: 20 MQRYFIETAI---ENARISGEDARHIERVMRMKQGDNIVVVAQNTAYICTIEGFEGDEVV 76 Query: 67 FKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119 + Q+ S V K ++L+ + QK+ E+GM A+ P ++ + Sbjct: 77 IEATGQTIPSPELPIQVTVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDKKK 136 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-- 177 +R++ AAEQ +P ++ P + + L++ D + ADE Sbjct: 137 GAKKQERLQKIAKEAAEQAHRTHIPTVFEPISFKQLVQQIDQFDAVFIADEEDAKAEKRT 196 Query: 178 --LEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 EKL + + ++LI GPEGG +E E L T +SLGPRILR++TA + A Sbjct: 197 RFAEKLKNVYDKKSKSMLIIFGPEGGISRQESEALLQAGAQT-MSLGPRILRAETAPLYA 255 Query: 234 MALV 237 ++ + Sbjct: 256 LSAI 259 >gi|148244283|ref|YP_001218977.1| hypothetical protein COSY_0119 [Candidatus Vesicomyosocius okutanii HA] gi|146326110|dbj|BAF61253.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 238 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 19/244 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYH--YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 RL+ + L K K D+Y +LA LR +G I LFNG +L+ I V Sbjct: 5 RLYQNISL--KINKKLVLDEYASCHLAKALRFLQGQEITLFNGDGRNYLATIVRVKNYCE 62 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ + + ++ Q ++ + K ++D++ QKSVE+G+ I P+ + Y + Sbjct: 63 VEIHTCTHNNSESQLNITLVQGITKGEKMDFLTQKSVELGVNRIIPIFSEYCVIHLQDEK 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 M+R + I A EQ +P + L N++ F + + Sbjct: 123 LQKRMERWQKIIIGACEQSGRSVIPSL-------VLAMNFEDFVNTKFGNGFILHHRAKY 175 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + + I+IGPEGG +E + L LG RILR++TA++A +A +Q Sbjct: 176 SLLEMNKVNQATIIIGPEGGLSDQEIANANE-QGAQSLVLGSRILRAETASLATIANMQL 234 Query: 240 ICGD 243 + G Sbjct: 235 LWGS 238 >gi|168826710|gb|ACA32081.1| protein of unknown function DUF558 [Haemophilus somnus 2336] Length = 272 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 45/243 (18%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM+ G+ I LF+G + + + I+ K +V SR + + Sbjct: 48 SDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA-IEVNILSRQLDNRESPLF 106 Query: 85 I-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132 I + + R+++ IQKSVE+G+ I P+ +++ +D+ R I Sbjct: 107 IHLGQVISRGERMEFTIQKSVELGVNIITPL---WSERCGVKLDKDRMEKKIQQWQKIAI 163 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH---------- 182 SA EQC +P I P L+ +W C ++ KL+ Sbjct: 164 SACEQCGRNIVPEIRPLMKLQ----DW------------CAEQDGTLKLNLHPRAKYTIR 207 Query: 183 AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + IP V +LIGPEGG ++E + F T + LG R+LR++T A++A+ +Q Sbjct: 208 TLPEIPPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAITALQVC 266 Query: 241 CGD 243 GD Sbjct: 267 FGD 269 >gi|229220771|ref|YP_001783785.2| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 2336] Length = 245 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 45/243 (18%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D +++ VLRM+ G+ I LF+G + + + I+ K +V SR + + Sbjct: 21 SDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA-IEVNILSRQLDNRESPLF 79 Query: 85 I-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132 I + + R+++ IQKSVE+G+ I P+ +++ +D+ R I Sbjct: 80 IHLGQVISRGERMEFTIQKSVELGVNIITPL---WSERCGVKLDKDRMEKKIQQWQKIAI 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH---------- 182 SA EQC +P I P L+ +W C ++ KL+ Sbjct: 137 SACEQCGRNIVPEIRPLMKLQ----DW------------CAEQDGTLKLNLHPRAKYTIR 180 Query: 183 AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + IP V +LIGPEGG ++E + F T + LG R+LR++T A++A+ +Q Sbjct: 181 TLPEIPPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAITALQVC 239 Query: 241 CGD 243 GD Sbjct: 240 FGD 242 >gi|160942759|ref|ZP_02090000.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii M21/2] gi|158445924|gb|EDP22927.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii M21/2] Length = 247 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 27/237 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DVQ 83 G H+LA V+R K GD ++L +G E+ + I+ G+ + F VE S + + +V Sbjct: 19 GADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDRVDFAVEPGYPSAAEPTVEVT 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139 + K ++L+ +I+ VE+G I P +RY + +R + AA+QC Sbjct: 79 LLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKKEEQKNERYNRIALEAAKQCG 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN--- 189 LP + P L N+ C+ ++F E G+ L +L A A + Sbjct: 139 RGVLPDVALP------LPNFGAVCRSFAQYDLVLFCYECGGA--PLRQLLADAKPADGQK 190 Query: 190 --VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +AI+ G EGG+ +EE E T + LGPRILR +TA +A ++ V + G+ Sbjct: 191 LRLAIVTGAEGGFAAEEAEMAAKAGAKT-VGLGPRILRCETAPLAVLSAVMILTGNL 246 >gi|325577675|ref|ZP_08147950.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC 33392] gi|325160420|gb|EGC72546.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC 33392] Length = 263 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 23/243 (9%) Query: 15 PLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-Y 71 P +K Q + S D +++ VLRM E + I LF+G + + +KI V K KVE Sbjct: 28 PESLKNQSTCQLSEDAANHVGRVLRMTESEQIELFDGSNHIYPAKIIEVSKKA-VKVEIL 86 Query: 72 QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR- 128 K+S++ + + +R+++ IQKSVE+G+ I P+ +++ +D R Sbjct: 87 GCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPL---WSERCGVKLDGERM 143 Query: 129 --------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 I+A EQC +P I P L+ D ++ ++ S++ Sbjct: 144 DKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGTLKLNLHPR---AQYSIKT 200 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L +I V +LIG EGG +E F T + LG R+LR++TA++AA++ +Q Sbjct: 201 LPSIPK-EGVRLLIGSEGGLSPQEIVQTEQQGF-TEILLGKRVLRTETASLAAISALQIC 258 Query: 241 CGD 243 GD Sbjct: 259 FGD 261 >gi|300775606|ref|ZP_07085467.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505633|gb|EFK36770.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 231 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 12/214 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI- 85 ++ ++ VLRMK+G++I + +GK K+ GK ++ + + S + +I Sbjct: 18 EEQQHIVKVLRMKDGEDIHVTDGKGKLASGKLIIEGKKAGIEISEIKENMPEFSPMLHIA 77 Query: 86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K +R+++ ++K+VEMG+ I + T T+ + N+D++R ++A++Q P Sbjct: 78 IAPTKNIDRIEFFVEKAVEMGISEITILQTEKTERKNVNIDKIRKQAVAASKQSLRFHFP 137 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYH 201 I ++ LK+ D V +LE++ A+ +IP + LIGPEG + Sbjct: 138 VINDLIKIQDFLKSIDPEHTFV-----AHCHENLERI-ALKNIPKMEKLTFLIGPEGDF- 190 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 SE++ + V +SLG + LR++TA V A Sbjct: 191 SEKEIAFLAENKVRAVSLGNQRLRTETAGVFVAA 224 >gi|229075985|ref|ZP_04208958.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18] gi|228707097|gb|EEL59297.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18] Length = 249 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD+I NGK + +I+ +V Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G+ A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGVAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|229825010|ref|ZP_04451079.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC 49176] gi|229790757|gb|EEP26871.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC 49176] Length = 246 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 15/225 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMKE D I L G + + IS ++ I ++ +++ Sbjct: 19 TGSDVNHIKNVLRMKESDEIKLSAGDGLLYTATISEFLPDRIVCRIIDCEGGKSELPAKI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAA 135 +F + K ++++ +IQK+VE+G+ I PV+ + T + ++R RT +++AA Sbjct: 79 VLFQGLPKKDKMELIIQKAVELGVSEIVPVMMKRTIVKFEDNKKEQKKLERWRTISLTAA 138 Query: 136 EQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 +Q +P + T +K ++N I + +E G + + E + + + ++ I Sbjct: 139 KQSGRAVVPEVSDFITFNEAVKRAEGLEYNL-IPYENEK-GMDKARELIKEVKNKKSIGI 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IGPEGG +E E L P+SLG RILR++TA +A ++++ Sbjct: 197 FIGPEGGISEDELE-LAINAGAKPISLGNRILRTETAGLALVSVI 240 >gi|261378167|ref|ZP_05982740.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685] gi|269145632|gb|EEZ72050.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685] Length = 241 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 25/225 (11%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD----VQYIFSPI 89 +VLR++ G I+LF+GK ++++ + K R + E R +T ++ + I S Sbjct: 27 NVLRIRTGTEIILFDGKGKAHAARLTVLEKR-RAEAEIL-REETADTESPLHITLIQSIS 84 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 R+D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+ Sbjct: 85 SGERMDFTLQKSVELGITAIQPVISERCIVRLNGERADKRLARWQEIVISACEQSGRNTV 144 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPEGG 199 P + P TT L+ E+ S+ + +A I ++ ++GPEGG Sbjct: 145 PPVLPITTYRESLRQ--------IPSESTRLIMSINRACKLADIRPQSGSIVFMVGPEGG 196 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +E++ F ++LG RILR++TAA+AA+A +Q + GD+ Sbjct: 197 WTEQEEQYAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 240 >gi|157372259|ref|YP_001480248.1| hypothetical protein Spro_4025 [Serratia proteamaculans 568] gi|157324023|gb|ABV43120.1| protein of unknown function DUF558 [Serratia proteamaculans 568] Length = 243 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL + S D +++ VLRM G + LF+G + + + I+ V K S Sbjct: 2 RIPRIYHPQPLIDHAEIFLSEDAANHIGRVLRMNAGQALQLFDGSNQVFDAVIAQVDKKS 61 Query: 65 IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 ++ ++ + + R + + S + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VQVQLSAGQLEDRESPLNLHLGQVIS--RGEKMEFTIQKSIELGVNVITPLFSERCGVAL 119 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + + + I+A EQC +P I LE D + ++ S Sbjct: 120 SGERLAKKIQQWQKIAIAACEQCGRNRIPEIREAMQLEAWCAEQDGSLKLNLHPRASHSI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + NV +LIGPEGG + E F T + LGPR+LR++T A+ A+ Sbjct: 180 NTLP-----LPVENVRLLIGPEGGLSTGEIAMTTGHGF-TDILLGPRVLRTETTALTAIT 233 Query: 236 LVQAICGD 243 +Q GD Sbjct: 234 ALQVRFGD 241 >gi|163847399|ref|YP_001635443.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aurantiacus J-10-fl] gi|222525248|ref|YP_002569719.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus sp. Y-400-fl] gi|163668688|gb|ABY35054.1| protein of unknown function DUF558 [Chloroflexus aurantiacus J-10-fl] gi|222449127|gb|ACM53393.1| protein of unknown function DUF558 [Chloroflexus sp. Y-400-fl] Length = 252 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 13/240 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +R FV+ P ++T D H VLR++ GD ++L +G+ + +I+++ + Sbjct: 12 RRFFVN-PGWLRTDQVEIDDAAIIHQWERVLRLRAGDRVMLLDGQGLAAIVEITHIDRR- 69 Query: 66 RFKVEYQSRSQTKQSDV---QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120 R + + +R Q + I+ R ++ IQK+VE+G+ I PV + T Sbjct: 70 RARGQVVARCQASGEPAVTFDLYLALIRPERFEWAIQKAVELGVYRIVPVTFARSLITGR 129 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R + AAEQ LP + P + L H + + + + Sbjct: 130 IDEHRLARWQRIATEAAEQAGRGRLPVVAEPQSFAAALTR-AHTADLAILLDEQATVHLR 188 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + +AI GPEGG E+ H + +SLGPRILR++TA + A+A++Q Sbjct: 189 TVLPPQPSLRQIAIYSGPEGGIDPAERTAAHQ-HGIQSVSLGPRILRAETAPLVALAMLQ 247 >gi|331091342|ref|ZP_08340182.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404503|gb|EGG84047.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium 2_1_46FAA] Length = 245 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 111/223 (49%), Gaps = 12/223 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 G +++ +VLRMK+G+ + + +G + +++ +I + + ++ + T+ S Sbjct: 19 EGSDVNHICNVLRMKKGEKLQISDGNNKKYICRIEDMTAEKVLLQIVEEKLGDTELSSKI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K++++++++QK+VE+G I PV T+ + ++R + A+ Sbjct: 79 YLFQGLPKSDKMEWIVQKAVELGAYEIIPVSTKRAVVKLDAKKAAKKVERWNSIAEGGAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILI 194 Q +P + T L + IV + G + + E + I +V I I Sbjct: 139 QSGRTVIPKVREVMTYREALA-YAETLDIVLVPYELAEGMDKTKEFIGQIEKGQSVGIFI 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ EE E + P++LG RILR++TA + ++++ Sbjct: 198 GPEGGFEKEEVEQAMEMG-AEPITLGKRILRTETAGLTVLSIL 239 >gi|258647970|ref|ZP_05735439.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259] gi|260851810|gb|EEX71679.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259] Length = 255 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 119/250 (47%), Gaps = 21/250 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 +K V + I T + D+ ++ VLRMKEG+ I++ +GK + + +S V Sbjct: 1 MKEFHVFYAPDIATNKELPHDEAQHITKVLRMKEGEEIIITDGKGSFYKAALSLVTNKHC 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 S++ + +R K + ++ +P K +R+++ ++K+ E+G+ I V +++ Sbjct: 61 SVQLLSQESARPLWK-NKLEIAVAPTKHLDRMEWFVEKATEIGVDQINFVACEFSERKQI 119 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLE------FLLKNWDHNCQIV--FADETCGS 174 ++R+ ISA +Q LP I T F K + +C + D Sbjct: 120 KIERMNRIAISAMKQSHKAILPQIPEMITFNAFINRPFEGKRYIAHCYNMENICDADSSP 179 Query: 175 ENSLEKLHAIAHI-------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 N+ +H+ A + + +LIGPEG + E E + F+ P+SLG LR++ Sbjct: 180 TNASTSIHSSAFLGQLLKGEESTQVLIGPEGDFSMREVEAAMAAGFI-PVSLGNSRLRTE 238 Query: 228 TAAVAAMALV 237 TAA+ A+ L+ Sbjct: 239 TAALVAVHLM 248 >gi|149176993|ref|ZP_01855602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797] gi|148844248|gb|EDL58602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797] Length = 242 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 24/226 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 G + H+L HVLRM+ GD +L+FNG E IS K++ +V + +Q K Sbjct: 20 GSEAHHLLHVLRMQAGDTVLVFNGTGAEAEGVISKTSRKTVEVQVTARHAAQAKSQTPLI 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNMDRVRTYTISAAEQCDIL 141 + + + K +R ++++K+ E+G+ + P++TR + + +++ +SAA+Q + Sbjct: 80 LATAVPKGDRFRWLVEKAAELGVTKLVPLLTRRSSVDPGQNRLKKLQQTIVSAAKQSGQI 139 Query: 142 TLPFIYPPTTLEFLLKNWDH--------NCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 L + ++NWD +++ AD GS + P V IL Sbjct: 140 QLMELTE-------VQNWDEFLSEISQTESRLLIAD-PAGSGVDFFRSGEKRESP-VVIL 190 Query: 194 IGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 IGPEGG+ +E + L LS G ILR +TAA+ L++ Sbjct: 191 IGPEGGFTPDELQSALEKGAKSVRLSEG--ILRIETAAILFAGLIR 234 >gi|167564119|ref|ZP_02357035.1| hypothetical protein BoklE_16297 [Burkholderia oklahomensis EO147] Length = 253 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 46/267 (17%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S + R FVD L D ++ VLR+ GD + LFNG G++ +++ + K Sbjct: 6 SAIPRFFVDAELQSDATLALPADVARHV-QVLRLAAGDAVTLFNGAGGQYRAEVVELDKR 64 Query: 65 ---IRFKVEYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VI 113 +R + + + + VQ I +++D++I+K+VE+G AI P V+ Sbjct: 65 AALVRIGAFTPADVEAPYRITLVQGIAG---GDKMDWLIEKAVELGAAAIAPLSTARGVV 121 Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----------------PTTLEFLLK 157 + + + ++ EQC +P + P P L +L Sbjct: 122 RLSGERAQKRVAHWQAVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELRLMLS 181 Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL 217 + FAD L + V +LIGPEGG +E+E F + L Sbjct: 182 P---RASVGFAD-----------LPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFASIL 227 Query: 218 SLGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA +A +A + A G W Sbjct: 228 -LGPRVLRTETAGIAMLAALAARWGGW 253 >gi|21674816|ref|NP_662881.1| hypothetical protein CT2005 [Chlorobium tepidum TLS] gi|21648035|gb|AAM73223.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 248 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 15/222 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 G+++H+LA VLR + GD + + +G + +GK S+ + ++ V Sbjct: 22 GEEFHHLARVLRCQPGDVVPITDGAGFAAELMVGSIGKHSLDGAICNPRTVPPPKTQVTV 81 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQ 137 S +K+ R D ++K+ E+G I P+IT+ T +T ++R R SAA Q Sbjct: 82 ALSLLKSPQRFDLFLEKATELGAARIVPMITKRTVSTPDSGKVGRKLERWRGIVQSAARQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP + P T L ++ +++ + SEN+ + L+G E Sbjct: 142 SRRYHLPELMSPLTFREALVLDGYDLRLIAHE----SENAFPSFEPAGK--KILFLVGGE 195 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 GG+ E F TPLS G +LR++TA + A+ALV+A Sbjct: 196 GGFTDAEVADAVEAGF-TPLSFGESVLRAETAGIFAVALVRA 236 >gi|290968566|ref|ZP_06560104.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1 str. 28L] gi|290781219|gb|EFD93809.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1 str. 28L] Length = 241 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 119/241 (49%), Gaps = 16/241 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 ++++F DFPL + + + +G ++ VLR GD I + + + +I S G S Sbjct: 1 MRKIFTDFPL--EARFELNGADARHVLVVLRHGVGDRIAVTDSTGTTYACRIDSIAGHSA 58 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 VE + +T+++ V +K ++ +++IQK+ E+G+ I PV + + N Sbjct: 59 VLTVEERLSCRTQETGKVVLAAGLLKNDKFEWLIQKATELGVHTIIPVQMEHCVVKLNDN 118 Query: 120 THYN-MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENS 177 +R R + AA+QC +P I L + + + ++ + ET S Sbjct: 119 HRSGKFERWRRIAVEAAKQCGRDDVPIIREVMPFTELFQAYGTSRFVIPYERET----TS 174 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L ++ +V + IGPEGG+ +E + + +SLG RILR++TAA+A++++ Sbjct: 175 LAEVCHEVQQGDVVLCIGPEGGFSPKEIAYAVSQAAWCRTVSLGKRILRAETAALASLSI 234 Query: 237 V 237 + Sbjct: 235 L 235 >gi|242373882|ref|ZP_04819456.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis M23864:W1] gi|242348436|gb|EES40038.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis M23864:W1] Length = 253 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 14/220 (6%) Query: 30 HYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 H++ HV+R KEG++I++ F+ K IS +I +++ + T+ I S Sbjct: 28 HHITHVMRYKEGNHIIITFSDKKVYKCEIISINDNNIELRLDEKQDINTELPQHITICSG 87 Query: 89 -IKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 IK ++ ++MIQK+ EMG +G R VI +DR + AAEQ L Sbjct: 88 LIKADKYEWMIQKATEMGASEFIAVGMDRSVIKLNESKVAKKIDRWQKIIKEAAEQSYRL 147 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VAILIGPE 197 T+P IY + L+ + +H ++ A E L H + + V ++ GPE Sbjct: 148 TIPNIYFKSNLKAIYDMINHYDYVLIAYEEQAKHGDLSHFKHILKQFESQDRVLMIFGPE 207 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GG +E T + LGPRILR++TA + A++ V Sbjct: 208 GGLSDKEVSLFQEHS--TLVGLGPRILRAETAPLYALSAV 245 >gi|86156675|ref|YP_463460.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter dehalogenans 2CP-C] gi|85773186|gb|ABC80023.1| hypothetical protein Adeh_0247 [Anaeromyxobacter dehalogenans 2CP-C] Length = 240 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 17/225 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + HYL VLR+ G + LF+G+ G W + + + + + + + V + Sbjct: 23 EARHYLRDVLRLAPGAAVELFDGRGGAW--EATVLDGFEALALGARRAAPGGGAPVWLLV 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDI 140 + K ++D ++QK+ E+G I P V+ + R R AA QC Sbjct: 81 ALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKGEARAARWRRIAEEAARQCGR 140 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEG 198 +P + P +LE L F G+ L A P A ++GPEG Sbjct: 141 ADVPEVRAPASLEAALAEVPAGFG-AFVFHPGGA-----PLSEAAPSPAGGYAAVVGPEG 194 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G E+E + SLGPR+LR++TAA+ A+AL+QA GD Sbjct: 195 GLTDAEREAC-ACAGARATSLGPRVLRAETAAIVAVALLQARFGD 238 >gi|332520272|ref|ZP_08396734.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4] gi|332043625|gb|EGI79820.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4] Length = 234 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 10/213 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDV 82 S ++ ++ VLR ++GD + + NGK G+ + + + KS +++ ++ Sbjct: 19 SKEESRHIVKVLRKRDGDILHITNGK-GDVFTAVILIAAIKSCTVEIKEVVTQNPLNYNL 77 Query: 83 QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K N R ++ ++K+ E+G+ +I P+I +++ DR SA +Q Sbjct: 78 HLAVAPTKMNDRYEWFLEKATEIGISSITPIICDHSERKVIKEDRFEKILQSAMKQSLSA 137 Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP + P EFL ++++ I +ET ++ SL+K+ + ++ ILIGPEG + Sbjct: 138 YLPKLNPAIAFKEFLKQDFNSALYIAHCEET--NKKSLKKV--LQTNTDITILIGPEGDF 193 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++E E + ++ P++LG LR++TAA+ A Sbjct: 194 STKEIELALANNYI-PVTLGETRLRTETAAIVA 225 >gi|166031241|ref|ZP_02234070.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC 27755] gi|166029088|gb|EDR47845.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC 27755] Length = 248 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 123/246 (50%), Gaps = 22/246 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 ++ FVD + + G +++ +VLRM+ G+ + + +G+ E+L ++ + + + Sbjct: 1 MQHFFVDASQVSEETIRIEGTDVNHMKNVLRMRIGEEVTVSDGQGKEYLCQVRDFEEEQV 60 Query: 66 RFKVEYQSRSQTKQSDVQ-----YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY--- 116 + K+ +TK SD + Y+F + K +++ ++QK VE+G+ A+ PV + Sbjct: 61 QLKI-----VETKASDAELPSKIYLFQGLPKQEKMELIVQKCVELGIYAVVPVSMKRCVV 115 Query: 117 ---TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC- 172 + ++R T SAA+Q +P + T + L+ + +V C Sbjct: 116 KLDAKKGAKKVERWNTIAASAAKQSGRGIVPEVTSVKTYKEALE-MAKDLDVVLVPYECA 174 Query: 173 -GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G E++ E + +I +V I IGPEGG+ +E + ++LG RILR++TA + Sbjct: 175 EGMEHTKELIQSIKPGQSVGIFIGPEGGFDPDEIALACEMGGQV-ITLGKRILRTETAGL 233 Query: 232 AAMALV 237 A ++++ Sbjct: 234 ALLSVL 239 >gi|99034296|ref|ZP_01314342.1| hypothetical protein Wendoof_01000858 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 141 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 69 VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q + + Y++ +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLP 144 + I AAEQ +++P Sbjct: 125 KLQAIEAAEQSGRISIP 141 >gi|30248783|ref|NP_840853.1| hypothetical protein NE0779 [Nitrosomonas europaea ATCC 19718] gi|30180378|emb|CAD84690.1| Conserved hypothetical protein 46 [Nitrosomonas europaea ATCC 19718] Length = 252 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 19/236 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 + D H+ A VLR+K GD + LF+G GE+ ++ + KS + ++E + + + Sbjct: 20 NSDTSHHAAQVLRLKPGDAVTLFDGTGGEFSGRLEQISKSGCQVRIECHLPVERESPLMI 79 Query: 84 YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTY----TISAAE 136 + + N ++D++IQK++E G I+P+ITR T + T D+ + I+A E Sbjct: 80 ELAQAVCANEKMDWIIQKAIEQGATRIQPLITRRTLIRLTGERADKREQHWQKIIIAACE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--------SENSLEKLHAIAHIP 188 QC +P + P L L+ + D G + L +L Sbjct: 140 QCGRNQIPLLLPLMPLSHWLEQ--KLAEKYKNDNPAGHDIMLSPAAHQRLVELSPPRTGE 197 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L GPEGG+ EE + H F+ P+ LG RILR+++AA+AA+A Q + GD+ Sbjct: 198 CLTLLTGPEGGFTGEETDAAHLAGFI-PVRLGNRILRTESAALAAIAAAQTLWGDY 252 >gi|326791224|ref|YP_004309045.1| ribosomal RNA small subunit methyltransferase E [Clostridium lentocellum DSM 5427] gi|326541988|gb|ADZ83847.1| Ribosomal RNA small subunit methyltransferase E [Clostridium lentocellum DSM 5427] Length = 246 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 20/243 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV+ + + G +++ +VLR+ G IL+ N + ++ I + + Sbjct: 1 MAKFFVNSEDVFENEIHIKGTDVNHIKNVLRLPVGKEILINNRQGKDYKCIIKLIDTDLV 60 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 +T + VQ + S IK +++++IQK++E+G+ I P+IT Sbjct: 61 TADIIGELEETTEPAVQTVLFQSLIKGEKMEFVIQKAIEIGVTVIIPIITERCIVKLESD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + T +R + SAA+Q +P + P T + L ++ +C + Sbjct: 121 KKTKSKCERWQKIAESAAKQSKRGIVPEVLWPMTFKEALTYAKQQLEV-----SCIPFEN 175 Query: 178 LEKLHAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 H ++ N + I IGPEGG+ EE L S ++P++LG RILRS+TA + Sbjct: 176 EHAYHIKTYLKNCKAKSIGIFIGPEGGFTDEEV-LLASTFQISPITLGKRILRSETAGLV 234 Query: 233 AMA 235 +A Sbjct: 235 TLA 237 >gi|220909539|ref|YP_002484850.1| 16S ribosomal RNA methyltransferase RsmE [Cyanothece sp. PCC 7425] gi|219866150|gb|ACL46489.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7425] Length = 243 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 5/237 (2%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L+RL + + Q + Q+HYL VLR+ GD L WL+++S Sbjct: 2 ARLQRLAIASTQRQQQQIYLTPSQHHYLIQVLRLTVGDRFLAILEPGERWLAELS--SSQ 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + +E V + + K D ++ ++ E+G+ I P+I+ T Q + Sbjct: 60 VALLLEEVEGETELAVPVTLLAALPKGQGFDQVVYQATELGVSRIIPLISDRTLLQPSEQ 119 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R R A EQ L +P I PP + ++ Q ++ + L Sbjct: 120 KLERWRRIVREATEQSGRLVVPRIDPPLRFSPAIAAFNPADQQLYFCTPDPAAPHLADCL 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A A +AI+ GPEGG+ E + F + +SLG R+LR+ TA + A++LV A Sbjct: 180 ADAPFNPIAIMTGPEGGWTETEMTQAQAAGFQS-VSLGQRVLRAVTAPIVALSLVAA 235 >gi|229117808|ref|ZP_04247172.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3] gi|228665605|gb|EEL21083.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3] Length = 249 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD+I NGK + +I+ +V Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV SLGPRILR++TA + Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPL 235 Query: 232 AAMA 235 A++ Sbjct: 236 YALS 239 >gi|239627767|ref|ZP_04670798.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517913|gb|EEQ57779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 249 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 116/235 (49%), Gaps = 22/235 (9%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75 CI+ +G +++ + LRMK G+ +L+ +G ++ +S + + ++ R Sbjct: 15 CIRI----TGPDVNHMKNALRMKPGEEVLISDGTGTDYRCALSSLDSDCVEARIVSVDRD 70 Query: 76 QTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 + ++F + K+++++ +IQK+VE+G I PV T+ + R + Sbjct: 71 GRELPSRIWLFQGLPKSDKMELIIQKAVELGAACIVPVSTKNAVVKLDAKKEEAKRKRWQ 130 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA------DETCGSENSLEKLH 182 SAA+Q +P + TL + +D+ + FA + G E S ++L Sbjct: 131 AIAESAAKQSGRSLMPEVMGLMTLG---QAFDYIEKEQFALRLIPYEHEAGMEGSRQELS 187 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + ++A+ IGPEGG+ E + L V P+SLG RILR++TA +A ++++ Sbjct: 188 RVGPGQDIAVFIGPEGGF-DEAEINLALKKGVRPVSLGKRILRTETAGLAMLSVL 241 >gi|32490916|ref|NP_871170.1| hypothetical protein WGLp167 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166122|dbj|BAC24313.1| yggJ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 205 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 30/217 (13%) Query: 44 ILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN---------R 93 +L+FNGK+ E+L KI Y K+ + +Q +Y+ S +K N Sbjct: 3 VLIFNGKEKEFLGKILKYKNKNTYIFLMHQIH--------KYVESTLKINLGQVLCNKKS 54 Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 +D+++QKSVE+G+ + P+ + + +N + +DR I +++QC L I Sbjct: 55 MDFLVQKSVELGIHTLTPLFSSRSNEFLNKKNLNKIIDRWEKIIIQSSQQCGRNFLLKIN 114 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 P ++ + +I +AD SE +++++ I N+ +LIGPEGG EE Sbjct: 115 DPISIYKWCDTKSTSFKI-YADPY--SEKKIKEINQ--KIKNINLLIGPEGGLSKEEVFH 169 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + F + GPRILR++T+ ++ ++++Q GD+ Sbjct: 170 VEKNNF-NKIKFGPRILRTETSVISIVSILQMYFGDF 205 >gi|172039252|ref|YP_001805753.1| hypothetical protein cce_4339 [Cyanothece sp. ATCC 51142] gi|171700706|gb|ACB53687.1| DUF558-containing protein [Cyanothece sp. ATCC 51142] Length = 241 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 18/227 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +Q HYL +VLR+KE ++ +G+ +L K++ I ++ ++ +V + Sbjct: 22 EQKHYLKNVLRLKENSEFIVLDGQYNTYLVKLNNDNGQIIKPLKEETELPI---NVTLMI 78 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 + K D +I+ E+G+ I P+I++ T + + + +DR R A EQ + +P Sbjct: 79 ALPKGKGFDEVIRSCTELGVNTIIPIISQRTLLKPSSHKLDRWRKIVKEATEQSERQRVP 138 Query: 145 FIYPPTTLEFLLKNW---DHNCQIVFADETCGSENSLEKL--HAIAHIPN-VAILIGPEG 198 I P + LKN + NC I C + + L + + I N + I G EG Sbjct: 139 TILEPISFSEALKNTKQPNQNCYI------CVTRKHAKHLLTYLLPEITNSITIATGCEG 192 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 G+ +E +L F+ ++LG R+LR+ TA + A++LV ++ Y Sbjct: 193 GWTEKEINEAINLGFIA-VNLGSRVLRAVTAPLVALSLVTSVIEQSY 238 >gi|22299289|ref|NP_682536.1| hypothetical protein tlr1746 [Thermosynechococcus elongatus BP-1] gi|22295472|dbj|BAC09298.1| tlr1746 [Thermosynechococcus elongatus BP-1] Length = 270 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 10/215 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 + +Q HYL HVLR+K GD + + +G+ WL +I GK+++ + R +++ Sbjct: 50 TAEQQHYLYHVLRLKVGDELWILDGQGQRWLGQIQ--GKTVKL-LRPDCRETELSTEIIL 106 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142 + +K + ++Q++ E+G+ I P+ T + Q + R + AAEQ + L Sbjct: 107 CLALLKAANFEQVLQQATELGVKRIVPIQTARSLLQPSINKYQRWQRILQEAAEQSERLY 166 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P ++ ++ + E + L + + + IGPEGG+ + Sbjct: 167 VPALSDPLSVAEMVSLTPKG----YIASLAAPELLWDCLPQMNLSEPIYLAIGPEGGWTA 222 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E E + + + +SLG R LR+ TAA+A++++V Sbjct: 223 SELEQVLAAGW-QAVSLGRRTLRAVTAAIASLSVV 256 >gi|257059193|ref|YP_003137081.1| hypothetical protein Cyan8802_1323 [Cyanothece sp. PCC 8802] gi|256589359|gb|ACV00246.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8802] Length = 239 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 16/221 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +Q HYL VLR+K GD + +G+ +L+++ S + + ++ + + Sbjct: 21 EQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEE--DSAKILQNLKECTELPLAITLMVA 78 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 P K N + +++ E+G+ + P+I++ T + + + ++R R A EQ + +P Sbjct: 79 LP-KGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKLERWRKIATEAGEQSERQLIP 137 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-----ILIGPEGG 199 I P L+N D +I C + H + H+ + I G EGG Sbjct: 138 TIVDPIVFNEALRNID---KIPSDRYICVTRKKAH--HLLTHLSETSQNPLVIATGCEGG 192 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + EE ET + F P++LGPRILR+ TA + A++L ++ Sbjct: 193 WTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSLAVSV 232 >gi|167586100|ref|ZP_02378488.1| hypothetical protein BuboB_12224 [Burkholderia ubonensis Bu] Length = 255 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD ++LF+G G++ +++ Sbjct: 8 AAVPRFFVEAALSAGAVLALPADVARH-AQVLRLQPGDALVLFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ AI Sbjct: 61 ----VEIDKRSAVAQLDA---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAI 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KN 158 P V+ + + R ++ EQC +P + P + L Sbjct: 114 APLSTSRGVVRLSGERAEKRVAHWRGIVRASCEQCGRNRVPDVAPVRGFDAWLDALPAAR 173 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A +V +LIGPEGG +E+ + F T LS Sbjct: 174 ADGELRLLLSPRASMPFASLPDAPPAA---SVTLLIGPEGGLSPDEEHAARTHGF-TALS 229 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255 >gi|330983201|gb|EGH81304.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 201 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 18/207 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 1 MSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 58 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+I+ Sbjct: 59 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKTTELGVSEITPIISERCEVRLKD 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 119 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 171 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEE 204 E L + ++A LIGPEGG + E Sbjct: 172 AEPLTSHDKPASLAFLIGPEGGLNDAE 198 >gi|332975772|gb|EGK12653.1| RsmE family RNA methyltransferase [Desmospora sp. 8437] Length = 248 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 13/240 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R F+D + GD H++ +V+RM+ GD ++ + + ++L+++ V + Sbjct: 1 MQRYFIDSTQIGPDRITVRGDDVHHIKNVMRMRAGDRLICCDSRGTDYLAELETVSEGEA 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 R SR + + V S K ++ ++++QK E+G + P I+ T Sbjct: 61 RCRILERMPSRGEPR-FRVAVAASLTKGDKWEWVLQKGTELGAASFLPFISARTVVKWDG 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +R + AAEQ +P + LL+ + +++FA E G S Sbjct: 120 KKADKKKERWQRIAKEAAEQSHRGQIPHVETVMDWRSLLERFPAFDRVLFAYEKGG--RS 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + ++IGPEGG+ EK + V+ + LGPRILR++TA +A ++ + Sbjct: 178 LGAVLREVTGERMLVVIGPEGGFTETEKSEAVAAGAVS-IHLGPRILRAETAPLALLSCI 236 >gi|238026201|ref|YP_002910432.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia glumae BGR1] gi|237875395|gb|ACR27728.1| Hypothetical protein bglu_1g05320 [Burkholderia glumae BGR1] Length = 253 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 17/252 (6%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 S + R FVD PL ++ + ++ VLR++ GD + LF+G G++ +++ +GK Sbjct: 6 SAIPRFFVDRPLQADSEVMLPAEVARHV-QVLRLEPGDPLTLFDGTGGQYRAELVELGKR 64 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 ++ V + +R V +++D++I+K+VE+G+ A+ P V+ Sbjct: 65 NAVARTVGFDARELETPYRVTLAQGIAGGDKMDWLIEKAVELGVTALAPLSTARGVVRLS 124 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----PTTLEFLLKNWDHNCQIVFADETC 172 + + + +A EQC +P + P L+ L D +++ + Sbjct: 125 GERADKRVAHWQGVVRAACEQCGRNRVPAVAPIAELSAWLDALPPAADAELRLMLSPR-- 182 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + L A A V +LIGPEGG E++ F + LG R+LR++TA +A Sbjct: 183 -ASIAFAALPATAPAGTVTLLIGPEGGLSPAEEDAARKHGFQA-IVLGARVLRTETAGMA 240 Query: 233 AMALVQAICGDW 244 +A + A G W Sbjct: 241 MLAALAARWGGW 252 >gi|52081092|ref|YP_079883.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis ATCC 14580] gi|52786471|ref|YP_092300.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis ATCC 14580] gi|319644950|ref|ZP_07999183.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2] gi|52004303|gb|AAU24245.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348973|gb|AAU41607.1| YqeU [Bacillus licheniformis ATCC 14580] gi|317392759|gb|EFV73553.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2] Length = 255 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 15/225 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 G+ H++A V+RM GD ++ KDG E +I V K + +T++ VQ Sbjct: 23 GEDVHHIATVMRMSPGDEVICC-AKDGHEAKCRIESVTKEEVLLSVIEWTGETRELPVQI 81 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 +I + + K ++L+++IQK E+G A R V+ + +R AAE Sbjct: 82 HIANGLPKGDKLEWIIQKGTELGASSFIPFQASRSVVKLDEKKAKKKRERWAKIAKEAAE 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSLEK--LHAIAHIPNVAI 192 Q +P + P T + LL++ + C + + + + E S + L +++ +V + Sbjct: 142 QSHRNAIPDVAPVHTFQRLLESLEDFDKCVVAYEESSKQGETSRFQSVLKSLSEGSSVLM 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG+ EE E L + LGPRILR++TA + A+A V Sbjct: 202 VFGPEGGFTEEEIEALKEKGALA-CGLGPRILRAETAPLYALAAV 245 >gi|291533062|emb|CBL06175.1| RNA methyltransferase, RsmE family [Megamonas hypermegale ART12/1] Length = 246 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 121/247 (48%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65 ++RLF+D C+ GD +L + +R++ + + + +K IS ++ Sbjct: 1 MRRLFIDE--CLSEDITIKGDDAKHLLYAMRVRPEQVFTIVDKESKVAQAKVISCTSDTV 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQ 118 + K+ ++ ++ + + K +++++++QK+VE+G ++ PV++ +Y + Sbjct: 59 QLKLLQYIEDADTEAPIEVVVAQCLPKGDKMEFIVQKAVELGAASVVPVVSHHCVVKYDE 118 Query: 119 NTHY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176 + + A +QC P + +LE L +++ D+ I + E E Sbjct: 119 KKKLARQQKWQKIADEAVKQCGRTIKPTVEAIVSLEQLAQDYTDYARFICYEAE---DEQ 175 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S +++ A ILIGPEGG+ EE + F + +S+G RILR++TA++AA+ + Sbjct: 176 SFKEMLQSADSKKYLILIGPEGGFAPEEVQLCKDAGFKS-ISMGKRILRAETASIAALTI 234 Query: 237 VQAICGD 243 V GD Sbjct: 235 VMYEKGD 241 >gi|223985669|ref|ZP_03635717.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM 12042] gi|223962360|gb|EEF66824.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM 12042] Length = 258 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 18/222 (8%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 Q H+L VLRMKEG+ + + + + + + G+ I+ E + + + Sbjct: 43 QRHHLQRVLRMKEGETLRVIDAEGAVFCGVLDGAGQ-IQI-TELLDEDRELPVTLTLVAG 100 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 IK R D+++QK E+G+ I P V+ + ++R + A++QC Sbjct: 101 LIKGERWDWLLQKCTELGVSRIVPFQSSRTVVKLESDKVDKKLERWQKIVQEASQQCKRT 160 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---ENSLEKLHAIAHIPNVAILIGPEG 198 P + P L + + DE LEK +V ++IGPEG Sbjct: 161 QRPQVCAPIELADAGAWRSEQNFVAYEDEALHGGLLSAQLEKGR------SVTLVIGPEG 214 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 G+ E E L + + SLG RILR++TAAVAA+ L A+ Sbjct: 215 GFSPAEIERLQTQGYRC-CSLGKRILRAETAAVAAVCLAGAV 255 >gi|295695881|ref|YP_003589119.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912] gi|295411483|gb|ADG05975.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912] Length = 247 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 17/215 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G+ H++A V+RM GD + + +G W + I VG + +E S + ++ ++ Sbjct: 20 GEDAHHIARVMRMVPGDRVEVGDGSGTVWTAVIESVGAGEVHLSLE-DSLEEDGEARLEL 78 Query: 85 IF--SPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH-YNMDRVRTYTISAAE 136 + K +++D ++QK+ E+G+ + PV + RY ++ + R R AAE Sbjct: 79 VLLQGLPKHDKMDLIVQKATELGVARVIPVAAARSVVRYQEDQEIRRLQRWRRIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAIL 193 Q +P I P + + W Q A DE+ L + + Sbjct: 139 QAKRSRIPEIVQPVSA---AEAWRWAAQADVALIFDESRRGRPLATALAGHPGVGRIFFA 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +GPEGG+ E + SL V P+ LGPRILR++T Sbjct: 196 VGPEGGWDPGEVDDATSL-GVEPVHLGPRILRTET 229 >gi|323527358|ref|YP_004229511.1| hypothetical protein BC1001_3037 [Burkholderia sp. CCGE1001] gi|323384360|gb|ADX56451.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1001] Length = 246 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 24/254 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ + + Sbjct: 1 MPRFFVGTPLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRAV 59 Query: 64 --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 IR + + + + Q I S +++D++I+K+VE+G + P+ T + Sbjct: 60 TVKIREFRDIEVEPPYRLTLAQGIAS---GDKMDWLIEKAVELGASSFVPLTTTRSVVRL 116 Query: 122 YNMDRVRTYT------ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +R + ++ EQC LP + P + L ++ DE Sbjct: 117 SGERALRRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLGAMP---RVPAGDELRILL 173 Query: 176 NSLEKLH--AIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + +H A+ P V +L+GPEGG+ + E+ F + LGPR+LR++TA Sbjct: 174 SPRASIHFSALPASPPKGPVTVLVGPEGGFSAAEEAAAMDHGFQA-VGLGPRVLRTETAG 232 Query: 231 VAAMALVQAICGDW 244 +A ++ + A G W Sbjct: 233 IAVLSALAATWGGW 246 >gi|116070640|ref|ZP_01467909.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107] gi|116066045|gb|EAU71802.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107] Length = 244 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 8/214 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 K D+ HYL VLR++ GD + + +G W +++ +++ + Q + Sbjct: 21 KLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAEL-VDEHTVKTDPTPCEQLVQPQPPL 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 S I+ D +++ + E+G+ I+P+ R + DR T A EQC+ L Sbjct: 80 GLAVSIIRRG-FDDVVRMACELGIDTIQPLRCERTVLQAEHRPDRWNTIVREAVEQCERL 138 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEGG 199 P + +LE L + + V T E + L IA IP +++GPEGG Sbjct: 139 WKPTVLELNSLESWLDS-SSGQKAVGVTRTKKLEPLGDWLEQIA-IPAQTTWLIVGPEGG 196 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + S E++ LH+ V P+ LGP ILR+ TAAVA Sbjct: 197 WTSAERDALHNH-SVAPIHLGPSILRTSTAAVAG 229 >gi|319406724|emb|CBI80357.1| hypothetical protein B11C_100024 [Bartonella sp. 1-1C] Length = 97 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 52/85 (61%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + LKRLFV L + + G Q YL HVLRMKEG ILLFNGKDGEWL+K+ + Sbjct: 1 MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGKDGEWLAKLLF 60 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYI 85 + K + + V Y R ++ + +I Sbjct: 61 IKKKLWWLVLYVKRGCSQYIRIFFI 85 >gi|325662164|ref|ZP_08150782.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471613|gb|EGC74833.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium 4_1_37FAA] Length = 246 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 117/224 (52%), Gaps = 14/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ + + +G + ++L +I S + ++ + ++ + Sbjct: 19 TGSDVNHMKNVLRMKTGEQLEISDGNNKKYLCEIESLEADKVTARILEEQEAENELPSKL 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K+++++ +IQK+VE+G + PV T+ + +R + SAA+ Sbjct: 79 YLFQGLPKSDKMELIIQKAVELGAWEVIPVATKRAVVKLDQKKAAKKRERWSGISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILI 194 Q +P I + L ++ + ++ + G + + E++ AI +V I I Sbjct: 139 QAGRNVIPEIKQVMNFQEAL-SYAKSLDVLLIPYELAEGMQATKERIQAIQPGQSVGIFI 197 Query: 195 GPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ EE K + + + P++LG RILR++TA + ++++ Sbjct: 198 GPEGGFEQEEVKLAMEAGAY--PITLGRRILRTETAGMTMLSVL 239 >gi|318041692|ref|ZP_07973648.1| hypothetical protein SCB01_08267 [Synechococcus sp. CB0101] Length = 255 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 12/223 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR-SQTKQSDVQ 83 S + YL VLR GD + +G W +++ ++ + Q SQ + Sbjct: 27 SAEHSRYLCKVLRYGPGDRFAVVDGAGHLWEAELLDREQARMLQPLAQPLLSQPRDQPAV 86 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILT 142 + + + + +++ +VE+G+ + P++ T +R ++ AAEQC+ L Sbjct: 87 VLAAAVVKRDFELVVRMAVELGVDRLVPLLCERTAVQGQLRPERWQSIAEEAAEQCERLW 146 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS------LEKL-HAIAHIPN-VAILI 194 LP I PPT L LL D V A + +E L + A +P+ V + Sbjct: 147 LPQIDPPTPLTELLST-DAATASVAAMRLWATTRQEGLPLLVEALASSAAQLPDQVWLAC 205 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ E+E + +P+ LGP ILRS TAAVA AL+ Sbjct: 206 GPEGGWSPAEEEQALGCGW-SPVQLGPTILRSSTAAVAGAALI 247 >gi|94265595|ref|ZP_01289339.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94269875|ref|ZP_01291589.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451038|gb|EAT01999.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453874|gb|EAT04232.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 241 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ Q G +L VLR++ GD + LF+G ++IS G R Sbjct: 1 MRRFFIEPTAITDRQAILQGADARHLRKVLRLQNGDEVELFSGDGLVHQARISG-GAHDR 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTH 121 ++ + +Q +D++ +K+ ++D +IQK E+G+ AI P ++ +T+ Sbjct: 60 VELAILASNQRPPADLRLHLGQAMLKSKKMDLVIQKCTELGVAAIHPYLSHHTKVPAPEP 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + + +QC+ P P + E L +C + C + + L Sbjct: 120 AKIQRWQKIIRESCKQCNQPWPPVCRPEASFEQALAA-GADCDLRL---LCWEDPTAAPL 175 Query: 182 HAIAH---IP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +A P ++ +LIGPEGG+ + E E + F+T + LG RILR++TAA+A +AL+ Sbjct: 176 REVADRLTTPRSLMVLIGPEGGFSNHEVEAAKAAGFLT-VGLGRRILRAETAAIATIALL 234 Query: 238 QAICGD 243 Q I D Sbjct: 235 QYIFND 240 >gi|296104610|ref|YP_003614756.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059069|gb|ADF63807.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 18/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80 S D +++ VLRM G I LF+G + + ++I+ K S+ V E R Sbjct: 21 SDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKSVHVNVLRGEIDDRESPLHI 80 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134 + + S + ++++ IQKS+E+G+ I P+ + + + + + + I+A Sbjct: 81 HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAIAA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQ +P I P LE + ++ S N+L + V +LI Sbjct: 139 CEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 194 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241 >gi|197303723|ref|ZP_03168760.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC 29176] gi|197297243|gb|EDY31806.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC 29176] Length = 249 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 10/240 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 ++ F D + + G +++ +VLRMKEG+ + + +G +L +I Y G Sbjct: 1 MQHFFADRSWVQGDKIRLEGSDVNHMKNVLRMKEGEEVQVSDGTGNAYLCQIEGYEGNQA 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ ++ T+ ++F + K ++++ ++QK+VE+G+ I P + + Sbjct: 61 VLKIREKTEKDTELPSKIWLFQGLPKGDKMELIVQKAVELGVYGIVPFAAKRSVVRLDEK 120 Query: 121 HYNMDRVRTYTIS--AAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R I+ AAEQ +P + T E L + + +V + G + + Sbjct: 121 KAGKKQIRWQAIAKGAAEQSGRGLIPEVEIVKTYAEALEFAKELDVILVPYELEEGMKAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + AI +V I IGPEGG+ +E + V P++LG RILR++TA + ++++ Sbjct: 181 MSIIEAIRPGQSVGIFIGPEGGFEEQEIGQARNAGAV-PVTLGRRILRTETAGITTLSIL 239 >gi|218680825|ref|ZP_03528722.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894] Length = 105 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/105 (48%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +L +P + P L LL W +I++ DE +N L L AI ++A+L+GPEGG Sbjct: 1 VLGIPEVAEPVKLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-KHLALLVGPEGG 59 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA GDW Sbjct: 60 FSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQAAIGDW 104 >gi|116618287|ref|YP_818658.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097134|gb|ABJ62285.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 245 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 35/255 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEG-------DNILLFNGKDGEWLSKIS 59 ++R F++ P+ + A D + + VLR + G +N+ + G+ ++ I Sbjct: 1 MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGE----VTLID 56 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVIT 114 Y +I+ Y S + DV + SP+K +R D+ IQK+ E+G+ I + + Sbjct: 57 YEVMNIKVIDRYYSNVELP-IDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVA 115 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFA 168 + + + R +AAEQ L +P E + W + Q +V Sbjct: 116 DWRKQQEKKVKRFNKIAQAAAEQAHRLVVP--------EIIFTTWQNTIQMPKNTGLVAW 167 Query: 169 DETCGSENSLEKLHAIAHIPNVAILI---GPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +E+ S + A++ +P+ LI GPEGG E E L F LGPRILR Sbjct: 168 EESARDGESAALIAAVSAVPSGEKLICVFGPEGGLTENEIEELRLQNFELA-GLGPRILR 226 Query: 226 SDTAAVAAMALVQAI 240 ++TA + AM+ + + Sbjct: 227 AETAPLYAMSAISVL 241 >gi|229543807|ref|ZP_04432866.1| protein of unknown function DUF558 [Bacillus coagulans 36D1] gi|229324946|gb|EEN90622.1| protein of unknown function DUF558 [Bacillus coagulans 36D1] Length = 250 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 15/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R F+D P + + + SG+ YH++A V+RM G + + +I + G ++ Sbjct: 1 MQRYFLDRPYRGEQEIRLSGENYHHIARVMRMSVGSRFYGVFSDEKVCICEIGEITGDAV 60 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQ 118 ++ +++ + V K ++L+++IQK E+G A R V+ T+ Sbjct: 61 VARITGWETAVKELPVHVTVSCGLPKADKLEWIIQKGTELGAFQFLPFLAERSVVKWDTK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSE 175 +R + AAEQ LP I PP + + L++ H Q + F + E Sbjct: 121 KEAKKRERWQKIAQEAAEQSHRSHLPEISPPVSFQQLIEE-SHTYQYKLVAFEENAKEGE 179 Query: 176 NS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E L ++ NV + GPEGG +E L + FV+ LGPRILR++TA + Sbjct: 180 QHRFAELLSNMSEGGNVLAVFGPEGGLSLDEIRRLEAAGFVS-CGLGPRILRAETAPLYV 238 Query: 234 MALV 237 ++ + Sbjct: 239 LSAI 242 >gi|110598135|ref|ZP_01386413.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340267|gb|EAT58764.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 247 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 15/220 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85 D++H+LA VLR ++G IL+ +G ++IS VGK S+ ++ ++ V Sbjct: 23 DEFHHLARVLRKQKGAVILVTDGNGIRCEARISEVGKSSLEAEILDHRLVGEPKTGVTVA 82 Query: 86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 S +K R ++ ++K+ E+G+ +I P+IT T + + R +T +SAA Q Sbjct: 83 LSMLKNPQRFEWFLEKATELGVSSIIPMITARTLAQPSKERVQGRLKRWKTIVLSAARQS 142 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 LP + P T + ++ +++ E S E +IG EG Sbjct: 143 KRYHLPALSEPLTFAQVSALEGYDLRLI------PYEASEEAPKVEFAGKKALFMIGGEG 196 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 G+ E E + F +SLG ILR++TA + A+ALV+ Sbjct: 197 GFTDSEVEKAKTAGFC-EISLGRTILRAETAGIFAVALVR 235 >gi|291522746|emb|CBK81039.1| RNA methyltransferase, RsmE family [Coprococcus catus GD/7] Length = 246 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 117/222 (52%), Gaps = 10/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRM G+ + + +G+ ++ +I+ + K +R + S + Sbjct: 19 TGTDVNHIRNVLRMTPGEEVTVSDGQGMDYFCRIAELTKEEVRLDIVDSWHSFVELPTKI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI--SAAE 136 Y+F + K ++++ +IQK+VE+G+ I PV T+ R+R +I SAA+ Sbjct: 79 YLFQGLPKADKMELIIQKAVELGVYEIVPVATKRAVVKLDPKKEEKKRLRWQSIAESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P I + E L+ + + ++ ++ G +++ +++ A+ ++ I IG Sbjct: 139 QAGRALIPQIATCISFEKALRMCNGLDAALIPYEKAEGMQHARDQVRALHGKHSIGIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ E E + + P++LG RILR++TA + ++++ Sbjct: 199 PEGGFEESEIEAARAAGAI-PITLGHRILRTETAGLTMLSIL 239 >gi|295092931|emb|CBK82022.1| RNA methyltransferase, RsmE family [Coprococcus sp. ART55/1] Length = 252 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 41/258 (15%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R FVD I T +G +++ +VLR+K G I + NG+ ++ IS +G+ Sbjct: 1 MNRFFVDVDGRDIGTDISITGGDVNHIKNVLRLKVGQEITVSNGRGRDYTCSISELGRDE 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-----------KTNRLDYMIQKSVEMGMGAIRPVI 113 + VE DV F+ + K++++D ++QK VE+G+ I PV Sbjct: 61 VLCHVE----------DVNDNFAELPVEVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVF 110 Query: 114 TRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE---FLLKNWDHNCQ 164 T T + +R R SAA+Q +P I P T + K D N Sbjct: 111 TARTIVKLDAKKAAKKTERCRIIAESAAKQSGRGIVPEITEPVTFAQAIEMAKTLDMN-- 168 Query: 165 IVFADETCGSENSLEKLHAIAHIPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSL 219 I+ +E G S ++ A P+ A + IGPEGG+ EE E + ++L Sbjct: 169 IIPYEEAEGLAKS-RQIIADVTAPSSARRSLGVFIGPEGGFAREEVEQAMAAG-AECITL 226 Query: 220 GPRILRSDTAAVAAMALV 237 G RILR++TA +A M+++ Sbjct: 227 GHRILRTETAGLAVMSII 244 >gi|331085961|ref|ZP_08335044.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406884|gb|EGG86389.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 246 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 118/225 (52%), Gaps = 16/225 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRM+ G+ + + +G + ++L +I S + ++ + ++ + Sbjct: 19 TGSDVNHMKNVLRMRTGEQLEISDGNNKKYLCEIESLEADKVTARILEEREAENELPSKL 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K+++++ +IQK+VE+G+ + PV T+ + +R + SAA+ Sbjct: 79 YLFQGLPKSDKMELIIQKAVELGVWEVIPVATKRAVVKLDQKKAAKKRERWSGISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 Q +P I + L K+ D ++ + G + + E++ AI +V I Sbjct: 139 QAGRNVIPEIKQVMNFQEALSYAKSLD--VLLIPYELAEGMQATKERIQAIQPGQSVGIF 196 Query: 194 IGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IGPEGG+ EE K + + + P++LG RILR++TA + ++++ Sbjct: 197 IGPEGGFEQEEVKLAMEAGAY--PITLGRRILRTETAGMTMLSVL 239 >gi|163857938|ref|YP_001632236.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella petrii DSM 12804] gi|163261666|emb|CAP43968.1| conserved hypothetical protein [Bordetella petrii] Length = 243 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 10/228 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F D PL + H+ VLR++ G I+LFNG GE+ + + GK Sbjct: 3 LPRFFCDTPLSPGVRLPLPTALAHHAVRVLRLRAGAAIVLFNGGGGEYPATLEIEGKDAW 62 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123 ++ ++ R + + +++D++++K+VE+G + P+ + + Q + Sbjct: 63 ARLGDFDPRDAELAGRIVLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGAR 122 Query: 124 MDRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++ + +A+EQC L + P TL L +++ E + + Sbjct: 123 LEKRVAHWARIAQAASEQCGRNRLMAVDAPATLRDWLDQPADGLRLLCHPEA--GQGLAD 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 L A + +++L+GPEGG+ S+ + L + V + GPR+LR++ Sbjct: 181 ALAAQPGLRQLSLLVGPEGGW-SDAELALAAERGVQAVRYGPRVLRTE 227 >gi|225387763|ref|ZP_03757527.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme DSM 15981] gi|225046138|gb|EEG56384.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme DSM 15981] Length = 247 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 10/235 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 FV+ Q + +G +++ +VLRM+ G+ L+ G + + S +S+ ++ Sbjct: 4 FFVEPEQIRDGQVRITGPDVNHMKNVLRMRPGEEFLVSGGGNDLLCAVESLDVQSVGARI 63 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYN 123 + S+ + + K+++++ +IQK+VE+G I PV T+ + Sbjct: 64 LGEQPSRELPAGIWLFQGLPKSDKMELIIQKAVELGAAGIIPVATKNAVVKLDAKKEESR 123 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN---CQIVFADETCGSENSLEK 180 + R + SAA+Q +P I + + + D + +++ + G E + E Sbjct: 124 LRRWQAIAESAAKQSKRSLVPEIGRVLSFKEAVARMDRDGFDLRLLPYENERGMEATREA 183 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +A+ IGPEGG+ E S + P+SLG RILR++TA +A +A Sbjct: 184 FTRVREAKRIAVFIGPEGGFDETEVNLARSAD-ILPVSLGKRILRTETAGLAVLA 237 >gi|302785802|ref|XP_002974672.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii] gi|300157567|gb|EFJ24192.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii] Length = 255 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 14/247 (5%) Query: 3 IHSHLKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + + L R + D P T + G ++ ++ VLR+ + + LFNG+ G + +S V Sbjct: 1 MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKVLRLGQDQRVELFNGRGGIVTAAVSAV 60 Query: 62 GKSIRFKVEYQSRS------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 +S V + ++ + F+ +K R D+M++K E+G + P+ T Sbjct: 61 RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120 Query: 116 YTQNTHYNMD-RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + N R + ++A +QC L + + L N + D T G+ Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRQSLNISSLKSQVLKNNE----DTTAGA 176 Query: 175 ENSLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E + + I +++GPEG + EEK L + + P+ LGPR LR +TAA+A Sbjct: 177 TEIVEVFNDSSKDIRGGTLIVGPEGDFTDEEKYDLVAAGAM-PVGLGPRRLRVETAAIAM 235 Query: 234 MALVQAI 240 +A V + Sbjct: 236 LATVMLV 242 >gi|194017737|ref|ZP_03056347.1| protein YqeU [Bacillus pumilus ATCC 7061] gi|194010637|gb|EDW20209.1| protein YqeU [Bacillus pumilus ATCC 7061] Length = 256 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 18/247 (7%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F+D + K +G+ H+L++V+RMK G IL E LSKI + K Sbjct: 1 MQRYFIDLTKEEVIAKGSIVINGEDVHHLSNVMRMKAGQEILCLTTDGFEGLSKIDTITK 60 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPV-----ITR 115 + VE + +Q ++ V+ + K ++L+ +IQK E+G A P IT+ Sbjct: 61 EEVICHVEGWT-NQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITK 119 Query: 116 YTQ-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETC 172 Q +H +R AAEQ +P + P +T + L L C + + + + Sbjct: 120 IDQKKSHKKRERWEKIAKEAAEQSYRNIIPRVDPVSTFKELTQLAGEFDKCVVAYEESSK 179 Query: 173 GSENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E S + L + + ++ GPEGG +E E L + V LGPRILR++TA Sbjct: 180 EGEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETHGAVI-CGLGPRILRTETAP 238 Query: 231 VAAMALV 237 + A++ + Sbjct: 239 LYALSAI 245 >gi|288550384|ref|ZP_05970221.2| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC 35316] gi|288314998|gb|EFC53936.1| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC 35316] Length = 248 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 18/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80 S D +++ VLRM G I LF+G + + ++I+ K S+ V E R Sbjct: 26 SDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKSVHVNVLRGEVDDRESPLHI 85 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134 + + S + ++++ IQKS+E+G+ I P+ + + + + + + ++A Sbjct: 86 HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAVAA 143 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQ +P I P LE + ++ S N+L + V +LI Sbjct: 144 CEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 198 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 199 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 246 >gi|229098782|ref|ZP_04229720.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29] gi|228684626|gb|EEL38566.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29] Length = 249 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD+I NGK + +I+ +V Sbjct: 1 MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETC--G 173 + ++R+R AAEQ +P ++ P + + LL + +++ +V +E G Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQG 177 Query: 174 SENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +++ K L + + I+ GPEGG EE L FV SLGPRILR++TA + Sbjct: 178 EKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|317970157|ref|ZP_07971547.1| hypothetical protein SCB02_11506 [Synechococcus sp. CB0205] Length = 248 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 17/240 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL-----SKISY 60 L+RL + P + +Q + ++ YL VLR GD + NG+ W S + Sbjct: 4 ELRRLLIA-PERLASQIALTREEERYLTRVLRFSAGDRFAVVNGQGALWTAVLRQSACAE 62 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQ 118 + +S+ +E+Q Q + + R + +++ +VE+G+ P++ R Sbjct: 63 LEQSLEAPLEHQPAPAP-----QLVLAAAVVKRDFEVVLRMAVELGVDRFIPLLCERTVV 117 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R+ AAEQC+ L P I P + LL D +A L Sbjct: 118 QGSLRLERWRSIAAEAAEQCERLWSPRIEEPMDVHQLLGLRDSAVPGFWATTRQQELPLL 177 Query: 179 EKLHA---IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + A + + ++ + GPEGG+ E++ + + P+ LGPRILRS TA V+ ++ Sbjct: 178 ASVLADQPLERLSSLWLACGPEGGWSPSEEQAAEAAGW-KPVDLGPRILRSSTACVSGLS 236 >gi|295102912|emb|CBL00457.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii L2-6] Length = 247 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 15/231 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DVQ 83 G H+L+ V+R + GD ++L +G E+ + I+ G +++ F VE S + + DV Sbjct: 19 GADAHHLSRVMRGRLGDTVILCDGSAVEYTATITGFGDETVEFSVEPGCPSAAEPTVDVT 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139 + K ++L+ +I+ VE+G P +RY + +R AA+QC Sbjct: 79 LLVGYPKQDKLEQVIRHGVELGCDHFIPFFSRYCVAAPKKEEQKNERYNRIAFEAAKQCG 138 Query: 140 ILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAIL 193 LP + P + ++ D ++F E G+ L +L A A + +AI+ Sbjct: 139 RGILPDVALPLPNFGAVCRSLDQYDLVLFCYECGGA--PLRQLLAEATPADGEKLKIAII 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G EGG+ +EE E T + LGPRILR +TA +A ++ V + G+ Sbjct: 197 TGAEGGFAAEEAEMAAKAGAKT-VGLGPRILRCETAPLAVVSAVMTLTGNL 246 >gi|255562222|ref|XP_002522119.1| conserved hypothetical protein [Ricinus communis] gi|223538718|gb|EEF40319.1| conserved hypothetical protein [Ricinus communis] Length = 290 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 10/219 (4%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78 + GD++ ++ VLR+ D I LFNGK I + ++ + F + QT Sbjct: 62 RVQGDEFWHIVKVLRLSISDRIELFNGKGALVEGCIERIDRTGLDFVAVNDPKIVLPQTI 121 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 + V F +K R D++++K E+G ++ P++T + + N +DR+ ++A +Q Sbjct: 122 KWHVFAAFGSLKGGRADWLVEKCTELGAHSVTPLLTERSPSISDNRVDRLERVILAATKQ 181 Query: 138 CDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 C L + PPT +E LL D + A E N L + + I++GP Sbjct: 182 CQRLHEMVLNPPTKVEGLLPLIADSKLSFLAAAEATPVVNVLASSRKES---SGLIIVGP 238 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EG + +E + L T + LGP LR +TA +A + Sbjct: 239 EGDF-TEREAALMMEAGATAVGLGPLRLRVETATMALLG 276 >gi|294501300|ref|YP_003565000.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium QM B1551] gi|294351237|gb|ADE71566.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium QM B1551] Length = 250 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 13/223 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQY 84 D H+++ V+RM EG + N + L KI + ++ +E+ S + V Sbjct: 21 DDAHHISRVMRMNEGSQFIACNEQGQAALCKIENISANEVKASIIEWISEEKELPVHVTI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + K ++L+ +IQK E+G A R V+ + + +DR AAEQ Sbjct: 81 VNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDKKSQKKLDRWNKIAKEAAEQS 140 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIP--NVAILI 194 +P + P + + L++ V A E + LHA+ A P +V +++ Sbjct: 141 HRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGETSHLHAVLSALKPGNSVLVVV 200 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG +E E L F T GPRILR++TA + A++ + Sbjct: 201 GPEGGLTEQEVEVLEENEF-TISGFGPRILRAETAPLYALSAI 242 >gi|33592148|ref|NP_879792.1| hypothetical protein BP0998 [Bordetella pertussis Tohama I] gi|33571792|emb|CAE41299.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381564|gb|AEE66411.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS] Length = 246 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 15/223 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSP 88 H+ VLR++ G ++LF+G GE+ + + GK+ ++ + R + + Sbjct: 26 HHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGL 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 +++D++++K+VE+G + P+ + + + + +AAEQC Sbjct: 86 PAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNR 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGG 199 L + P L L + C E L+ A+A ++ +L+GPEGG Sbjct: 146 LMAVDAPQALAAWLAQAPGAALRLL----CHPEAELDLAGALARHAAHDDICLLVGPEGG 201 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + EE E + V + GPR+LR++TA +A +A V AI G Sbjct: 202 WSDEELEQARAA-GVQAVRFGPRVLRTETAGIALIAAVSAIRG 243 >gi|121606961|ref|YP_984290.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas naphthalenivorans CJ2] gi|120595930|gb|ABM39369.1| protein of unknown function DUF558 [Polaromonas naphthalenivorans CJ2] Length = 250 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 114/237 (48%), Gaps = 21/237 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK---DGEWLSKISYVGKS- 64 R + D L T + +Q VLR++ G+ I LFNG+ +GE+ + + +G+S Sbjct: 4 RFYADVALAAGTS-ISLPEQTARHVQVLRLQPGERITLFNGRGDTEGEFDATVERMGRSD 62 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + + ++ + + +R+D++I+K+ E+G +I+PV++ + Sbjct: 63 VDVTIGAWTATAREAARTIHLVVGMPANDRMDWLIEKATELGAASIQPVMSERSVLRLKA 122 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDH------NCQIVFADE 170 + + R I+++EQC +P I+ TL E+L K+ N + Sbjct: 123 ERADKKVAHWRGIAIASSEQCGRNRVPLIHDVATLGEWLKKSTAETGAAASNGMRLLLSL 182 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 GS E + + A + + L GPEGG E+ + F +P++LGPR+LR++ Sbjct: 183 QDGSRPLAEAVASTA-LASFTFLNGPEGGLSPAEEAAALACGF-SPVTLGPRVLRAE 237 >gi|196231634|ref|ZP_03130492.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428] gi|196224487|gb|EDY18999.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428] Length = 249 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 16/225 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G+ +H L VLRMK GD LFNG+ E +I+ V K + ++ S S+++ Q + Sbjct: 21 GETHHAL-DVLRMKAGDRATLFNGQGAEATVEIASVDKG-KIALKKISVSKSEPIGCQIV 78 Query: 86 FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 K +D +++K+ E+G I P+++ T ++ + I AA+Q Sbjct: 79 LGQAIPKGKNMDLIVEKATELGAAGIVPLLSERTVVRCDEGEALAKREKWQRVAIEAAKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-----HIPNVAI 192 C LP ++ P + + ++ + ++ A S + E L V + Sbjct: 139 CGQNWLPTVFKPQSPKDFFQSGEKFDLMLIASLQPDSRHVKEVLAEAGASGKKKPARVLV 198 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+GPEG + E L P++LGP ILRS+TAA+ ++++ Sbjct: 199 LVGPEGDFTPAEV-NLAKNAGCRPVTLGPIILRSETAAIYCLSVL 242 >gi|91790687|ref|YP_551639.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas sp. JS666] gi|91699912|gb|ABE46741.1| protein of unknown function DUF558 [Polaromonas sp. JS666] Length = 260 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 25/230 (10%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGE-------WLSKISYVGKS-IRFKV-EYQSRSQT 77 DQ VLR++ GD+I LFNG + + I ++G+S +R V Y + + Sbjct: 21 DQTARHVQVLRLQPGDHITLFNGAGEGGGIGEGEFDATIEHMGRSDVRAMVGAYTATRRE 80 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131 V R+D++I+K+ E+G +I+P+++ + + + R Sbjct: 81 TDRAVHLALGMPANERMDWLIEKATELGAASIQPLMSERSVLRIKGERADKKLAHWRGVA 140 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD--ETCGSE-------NSLEKLH 182 ++A EQC LP I L LK V D E G+ + Sbjct: 141 VAACEQCGRNRLPAIREVMGLGDWLKAQAGQTAGVTQDSAEAVGTRLLLSLQAGTRPLAQ 200 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 A+A+ + L GPEGG E+ + FV P++LGPR+LR++TA +A Sbjct: 201 AVANTGALTFLSGPEGGLSPAEEAAAIACGFV-PVTLGPRVLRAETAPLA 249 >gi|149198581|ref|ZP_01875625.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155] gi|149138296|gb|EDM26705.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155] Length = 232 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 20/230 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 +++ F D + K + ++ LRMKEGD +LL NG+ +KI+ + G++ Sbjct: 1 MRKFFCDELFEVGQLVKIDKTESRHILQTLRMKEGDELLLMNGEGLLADAKIAKIEGRNN 60 Query: 66 RF----KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 F +V + R + K + +P L +++++VE+G+ ++ + +Y+ + Sbjct: 61 LFCELLQVTHAPRPKLK---ISLFVAPPSNGTLALILKQAVELGVHSVYLMACQYSVSKS 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLE--FLLKNWDHNCQIVFADETCGSENSLE 179 V+ ISAA+Q LP + T + L ++ V +D+ ENS Sbjct: 118 KKEKNVQAELISAAKQSGNPYLPKVLSGLTFKEALALAPANNFYGAVPSDDFSAPENS-- 175 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 I + IGPEGG+ E + + LP PL++GP ILR +TA Sbjct: 176 -------IGEAGVWIGPEGGFSDSELQEIQKLP-ACPLAIGPYILRVETA 217 >gi|77920669|ref|YP_358484.1| hypothetical protein Pcar_3079 [Pelobacter carbinolicus DSM 2380] gi|77546752|gb|ABA90314.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 25/223 (11%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 VLR+ G ILL +G +I ++ KS V + Q V+ + + K ++ Sbjct: 28 VLRLARGAEILLLDGLGNLCHCRIDHLDRKSGSAMVLSRCTQQETAFPVELMQALPKADK 87 Query: 94 LDYMIQKSVEMGMGAIRPVIT----------RYTQNTHYNMDRVRTYTISAAEQCDILTL 143 ++ ++QK E+G+ P+ T R TQ + +R AA QC L Sbjct: 88 MELVLQKGTELGITGFTPLQTSRSVPRLKPERETQRHQRWLRIIR----EAARQCRRPLL 143 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIP-NVAILIGPEGGY 200 P + L+ L +++ +E GS+ L A+ IP A+LIGPEGG+ Sbjct: 144 PSLAAIRPLDEALGQCRSELRLMLWEE--GSQ----PLDAVLPERIPAGAAVLIGPEGGF 197 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EE ET FV P+ GPRILRS+TA AA ++Q GD Sbjct: 198 SREEAETARQHGFV-PVLFGPRILRSETAGFAAATILQYRYGD 239 >gi|227824690|ref|ZP_03989522.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905189|gb|EEH91107.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 247 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 16/245 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F+ P + +G H++ HVLRMK GD + + + + KI+ K Sbjct: 6 RFFLGKPFADTLE--VTGQDAHHMGHVLRMKVGDEVQIVSLDQIAAVMKITAFSKDAVTL 63 Query: 69 VEYQSRSQTKQSDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN- 119 + + + V+ Y P K ++++++IQK++E+G+ I+PV + R + Sbjct: 64 ETVRILEENHEPTVRVTLYQGLP-KQDKMEWIIQKAIELGISEIQPVSMAHCVVRLDEGK 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T ++R + +AA+Q +P I P + L + + + +++ + E SL Sbjct: 123 TAKKLERWQKIAEAAAKQSKRDIVPVIKAPLPVALALTSCEADLKLMAYE--VEEEGSLR 180 Query: 180 K-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L ++A+LIGPEGG +E + + + + +SLGPRILR++TAA+AA+A +Q Sbjct: 181 RTLQKTPDAKSIALLIGPEGGISGDEFDLAAAHDWQS-VSLGPRILRTETAALAALAAIQ 239 Query: 239 AICGD 243 G+ Sbjct: 240 YETGN 244 >gi|218678184|ref|ZP_03526081.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894] Length = 105 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +AS DQ++YLA+VLRM+ G ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSAGAALEASADQFNYLANVLRMEAGAEILLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQ 76 K I+ ++R Q Sbjct: 61 PTRKRIQLTATEETRPQ 77 >gi|77965940|gb|ABB07320.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia sp. 383] Length = 262 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 15 AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARL------ 67 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 68 ----VEIDKRSALAQIDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + P L Sbjct: 121 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAP 180 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 181 ADGELRLLLSPRASIPFTSLPDAPPAA---TVTLLIGPEGGLSPDEENAARARGF-TALS 236 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 237 LGPRVLRTETAGAAVLAALAARWGGW 262 >gi|291549888|emb|CBL26150.1| RNA methyltransferase, RsmE family [Ruminococcus torques L2-14] Length = 255 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 117/242 (48%), Gaps = 14/242 (5%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64 ++ F D P C+ Q + +G +++ +VLRMK G+ + + +G+ ++ + Y K Sbjct: 1 MQHFFAD-PSCVDGEQIRLAGSDVNHMKNVLRMKPGEEVWVSDGEGMDYFCSVEGYEEKE 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYT 117 +V + SQT+ + +F + K +++++++QK+VE+G A R V+ Sbjct: 60 AVLRVVKKEVSQTELASRLILFQGLPKGDKMEWIVQKAVELGAYRIVPFAAKRSVVKLDQ 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSE 175 + +R + AAEQ +P + + + + N+ +V + G + Sbjct: 120 KKAGKKRERWQAIAKGAAEQSKRGIVPQVQDVMSFQEAM-NYAKELDVVLVPYELQEGMK 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + I +V I IGPEGG+ E E + P++LG RILR++TA + ++ Sbjct: 179 ATEAVISKIEPGQSVGIFIGPEGGFDESEIEQAKEAGAI-PITLGKRILRTETAGLTTLS 237 Query: 236 LV 237 ++ Sbjct: 238 IL 239 >gi|71909198|ref|YP_286785.1| hypothetical protein Daro_3586 [Dechloromonas aromatica RCB] gi|71848819|gb|AAZ48315.1| 16S rRNA m(3)U-1498 methyltransferase [Dechloromonas aromatica RCB] Length = 245 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 22/227 (9%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-----EYQSRSQTKQSDVQY 84 + VLR+ G ++LF+G+ GE+ + I + + F V E + S+ + VQ Sbjct: 26 RHAVRVLRLPPGAPMVLFDGRGGEYPAHIERIERDRVFAVLGAWCEIECESRLAITLVQA 85 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 + + +++D+ IQK+VE+G+ I PV +R + + + + SA EQC Sbjct: 86 LQA---GDKMDFTIQKAVELGVRDIVPVESRRSVIRLAGERAAKRVAHWQGVAASACEQC 142 Query: 139 DILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 +P + P LE L H +++ A + +E++L + + V +LIG E Sbjct: 143 GRNQVPLVAPLEKLEHWLARPSHGELRLMLAPD---AEDTLASIRPVGQ---VQLLIGAE 196 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG +E F + LGPR+LR++TA +AA+A +QA+ GD+ Sbjct: 197 GGLDPQEVMAARQAGFQA-VRLGPRVLRTETAGLAALAALQALWGDF 242 >gi|323141893|ref|ZP_08076754.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT 12067] gi|322413640|gb|EFY04498.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT 12067] Length = 247 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 113/228 (49%), Gaps = 11/228 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G +++ VLRM+ G + + + L++IS + + +++ + V+ I Sbjct: 18 GVDARHISKVLRMQPGAQLQIVSDDGVSALAEISAIDSECVTVHCLEKLAESHEPAVRLI 77 Query: 86 FSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 + K +++++IQK+VEMG ++ PV ++ ++R + SAA+Q Sbjct: 78 LAQGLAKGEKMEFIIQKAVEMGAYSVVPVAMEHSVVRLDGAKAAKKVERWQKIAESAAKQ 137 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSLEKLHAIAHIPNVAILIG 195 +P + P T+ +L D +I+ ++ + +L++ A + ++ ++IG Sbjct: 138 SKRDIIPEVQPVQTMAQMLAANDCATKIIAYECEDKKSLKAALKEAQAKGALTDLLLIIG 197 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG E ET + V P+SLG RILR++TA + A++ + GD Sbjct: 198 PEGGISEAELETARAAGAV-PVSLGRRILRAETAGLVAISAIFYETGD 244 >gi|229104942|ref|ZP_04235598.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28] gi|228678436|gb|EEL32657.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28] Length = 249 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 18/243 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD+I NGK + +I+ +V Sbjct: 1 MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETC--G 173 + ++R+R AAEQ +P ++ P + + LL + +++ +V +E G Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQG 177 Query: 174 SENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +++ K L + + I+ GPEGG EE L FV SLGPRILR++TA + Sbjct: 178 EKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLY 236 Query: 233 AMA 235 A++ Sbjct: 237 ALS 239 >gi|229260091|ref|YP_367964.2| hypothetical protein Bcep18194_A3719 [Burkholderia sp. 383] Length = 255 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEIDKRSALAQIDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + P L Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAP 173 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 174 ADGELRLLLSPRASIPFTSLPDAPPAA---TVTLLIGPEGGLSPDEENAARARGF-TALS 229 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255 >gi|160901468|ref|YP_001567050.1| 16S ribosomal RNA methyltransferase RsmE [Delftia acidovorans SPH-1] gi|160367052|gb|ABX38665.1| protein of unknown function DUF558 [Delftia acidovorans SPH-1] Length = 250 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 19/210 (9%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQSDVQ--YIF 86 VLR++ GD I LF G+ GE S + +R V + ++ ++ ++ Sbjct: 27 QVLRLQPGDGITLFEGRAGEGFSGGEFEATVLRMGRSDVAVRIGAHHAVEREPLRPVHLL 86 Query: 87 SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 + I N R+D++++K+ E+G +I P++ + + + + +SA EQC Sbjct: 87 AGITANERMDWLVEKAAELGAASITPLVAERSVLKLKGERAEKKLAHWQAVAVSACEQCT 146 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQI----VFADETCGSENSLEKLHAIAHIPNVAILIG 195 +P ++ P LE L++ + G+ E L A A V L G Sbjct: 147 RNRVPPLHTPADLEDWLESGAQQLPPGTLRLLLSLGEGTRPLGEVLDATAEDAPVVFLSG 206 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 PEGG E+ + FV P++LGPR+LR Sbjct: 207 PEGGLSPAEEALARAQGFV-PVTLGPRVLR 235 >gi|302671977|ref|YP_003831937.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316] gi|302396450|gb|ADL35355.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316] Length = 250 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 115/231 (49%), Gaps = 29/231 (12%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE------------YQ 72 +G+ Y+++A+VLRM++G+ + D E GK I +++E + Sbjct: 21 TGNDYNHIANVLRMQKGEQFSVSIRDDDE--------GKEIFYEIEDITDSSVIGHLCFI 72 Query: 73 SRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMD 125 + + Y+F + K ++++ +IQK+VE+G I P+ T+ + + Sbjct: 73 EKVGNELPSKIYLFQGLPKVDKMELIIQKAVELGAFQIVPMSTKRCVVKLDDKKAENKIK 132 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAI 184 R + + +AA+Q +P + P T++ ++ D + +I+ + G E + + I Sbjct: 133 RWQAISEAAAKQSKRAIIPEVTMPMTMKQAVEFAKDMDVKIIPYENAKGIEETKRIIENI 192 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+A+ IGPEGG+ SE++ L + P++LG RILR++TA ++ Sbjct: 193 KPGQNIAVFIGPEGGF-SEQEIDLCRENDIMPITLGKRILRTETAGFTIIS 242 >gi|89899025|ref|YP_521496.1| 16S ribosomal RNA methyltransferase RsmE [Rhodoferax ferrireducens T118] gi|89343762|gb|ABD67965.1| protein of unknown function DUF558 [Rhodoferax ferrireducens T118] Length = 260 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 32/225 (14%) Query: 34 HVLRMKEGDNILLFNG------------KDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQ 79 VLR++ GD+I LFNG + GE+ + ++ +G+S ++ KV Y + + Sbjct: 27 QVLRLQPGDSITLFNGGPGWDERDSEHTQGGEFEASVTRMGRSDVQVKVGAYHAVEREAA 86 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTI 132 V R+D++++K+ E+G+ +I+P++T + N +R ++ + Sbjct: 87 HRVHLAVGMPANERMDWLVEKATELGVASIQPLMTERS-VLRLNPERAGKKQAHWQSVAV 145 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSENSLEKLHAIA----- 185 +A EQC +P I+ TL +K Q + G+++ + A A Sbjct: 146 AACEQCGGNRVPVIHAVMTLAAWIKAQPAQASDQRLLLSLRPGAQSVRAAVKAFADPASA 205 Query: 186 --HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 H + L GPEGG E++ + F P++LG R+LR++T Sbjct: 206 GAHTEAITFLSGPEGGLSPAEEDIALACGF-APVTLGARVLRAET 249 >gi|167571263|ref|ZP_02364137.1| hypothetical protein BoklC_15582 [Burkholderia oklahomensis C6786] Length = 253 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 54/271 (19%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK------- 57 S + R FVD L D ++ VLR+ GD + LFNG G++ ++ Sbjct: 6 SAIPRFFVDAELQSDATLALPADVARHV-QVLRLAAGDAVTLFNGAGGQYRAEFVELDKR 64 Query: 58 --ISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP---- 111 + +G VE R Q +++D++I+K+VE+G AI P Sbjct: 65 AALVRIGAFTPADVEAPYRITLAQGIA-------GGDKMDWLIEKAVELGAAAIAPLSTA 117 Query: 112 --VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----------------PTTLE 153 V+ + + + ++ EQC +P + P P L Sbjct: 118 RGVVRLSGERAQKRVAHWQGVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELR 177 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 +L + FAD L + V +LIGPEGG +E+E F Sbjct: 178 LMLS---PRASVGFAD-----------LPGMPPAGGVTLLIGPEGGLAPDEEEAARERGF 223 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + L LGPR+LR++TA +A +A + A G W Sbjct: 224 ASIL-LGPRVLRTETAGIAMLAALAARWGGW 253 >gi|239827772|ref|YP_002950396.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. WCH70] gi|239808065|gb|ACS25130.1| protein of unknown function DUF558 [Geobacillus sp. WCH70] Length = 249 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 17/225 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84 GD YH++ V+RM++G ++ + L KI + + + +V QT+ Y Sbjct: 20 GDDYHHIVRVMRMEKGSELICVLPSNKAVLCKIEQITNEHVIVRVVKWIDEQTELPIQIY 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 I + K ++L+++IQK E+G A R ++ + + ++R + AAEQ Sbjct: 80 IAHGLPKGDKLEFVIQKGTELGASSFIPFVAARSIVKWDAKKANKKLERWKKIAKEAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI------AHIPNVA 191 +P ++ P T+ L++ VFA E + + + L A+ H ++ Sbjct: 140 SHRGKIPDVHAPMTIHELIEFAKTVDYRVFAYEEEAKQGNHQTLAAVFQQMKRGH--SLL 197 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + GPEGG+ EE E F + SLGPRILR++TA + +A+ Sbjct: 198 AVFGPEGGFSDEEVELFKHHGFFS-CSLGPRILRTETAPLYLLAV 241 >gi|319403716|emb|CBI77301.1| hypothetical protein BARRO_10234 [Bartonella rochalimae ATCC BAA-1498] Length = 97 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 52/85 (61%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + LKRLFV L + + G Q YL HVLRMKEG ILLFNG+DGEWL+K+ + Sbjct: 1 MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGQDGEWLAKLLF 60 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYI 85 + K + + V Y R ++ + +I Sbjct: 61 IKKKLWWLVLYVKRGCSQYIRIFFI 85 >gi|227872816|ref|ZP_03991130.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268] gi|227841343|gb|EEJ51659.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268] Length = 254 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 118/233 (50%), Gaps = 29/233 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84 G+ +H+L VLR + G+ IL+ +G+ ++ +I S+ + + ++ + + Sbjct: 20 GENFHHLHKVLRGQIGEKILISDGEGVDYQCEIQSFSEEEAVLSICFREEPHELPAKIIL 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 + + K ++++++IQK+VE+G+ A+ P+ ++ T + + R ++ SAA+Q Sbjct: 80 LQALPKGDKMEWIIQKAVELGISALIPLESKNTVMKLKEKKEEKKISRWQSIMDSAAKQS 139 Query: 139 DILTLP-----------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 LP F Y +F L +++ ++ E L K+ A Sbjct: 140 KRSILPKMENGMGWKEAFSYVKDC-DFKLLPYENERGVIPTREI------LAKMEAAVKG 192 Query: 188 P---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++A+ IGPEGG+ EE E F+ P+SLG RILR++TAA+ A++L+ Sbjct: 193 KKNCSIALCIGPEGGFTKEEVEQAMGEGFL-PISLGKRILRTETAAITALSLI 244 >gi|161506354|ref|YP_001573466.1| hypothetical protein SARI_04551 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867701|gb|ABX24324.1| hypothetical protein SARI_04551 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 210 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%) Query: 38 MKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRSQTKQSDVQYIFSPIKTNR 93 M G + LF+G + + ++I S KS+ +V E R + + S + + Sbjct: 1 MGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVMS--RGEK 58 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTLP 144 +++ IQKS+E+G+ I P+ +++ +D R I+A EQC +P Sbjct: 59 MEFTIQKSIELGVSLITPL---FSERCGVKLDSERLNKKRQQWQKIAIAACEQCGRNRVP 115 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 I PP LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 116 EIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVERVRLLIGPEGGLSADE 170 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 171 IAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|260583902|ref|ZP_05851650.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC 700633] gi|260158528|gb|EEW93596.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC 700633] Length = 250 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 113/222 (50%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYI 85 DQ H++ V+RM ++ + + + +++KI+ + ++E Q + DV Sbjct: 22 DQEHHMLKVMRMNIEESCEVVDENEQLYIAKITQLS-PFELRIEEHKEQQVELPIDVTIF 80 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN-THYNMDRVRTYTISAAEQCD 139 K ++L+ ++QK+ E+G+ I PV + ++T++ + ++R++ AAEQ Sbjct: 81 VGLSKGDKLETIVQKATELGVHTIVPVEMKRNMVKWTKDKSQKKIERLQKIAQEAAEQSH 140 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195 L +P + TL+ + + + + A E E ++ L ++ ++A G Sbjct: 141 RLHVPKVLDLMTLKESVVLAKQSTKALVAFEEVAKEGEAAVFVQTLTSLQKGDSIAFYFG 200 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ +E E L+S V +LGPRILR++TA + A+A V Sbjct: 201 PEGGFDLQEIEYLNSQE-VHSCALGPRILRAETAPMYALAAV 241 >gi|218509849|ref|ZP_03507727.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli Brasil 5] Length = 103 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P L LL W +I++ DE +N L L AI ++A+L+GPEGG+ Sbjct: 2 IPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRER-HLALLVGPEGGFSE 60 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE+ L SL FVT + LGPRILR+DTAAVAA+A+VQA GDW Sbjct: 61 EERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQAAIGDW 102 >gi|257437591|ref|ZP_05613346.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii A2-165] gi|257199898|gb|EEU98182.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii A2-165] Length = 305 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 29/237 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVE--YQSRSQTKQSDV 82 G H+L+ V+R K GD ++L +G E+ + I+ G +++ F VE Y S ++ Sbjct: 77 GADAHHLSRVMRGKLGDTVILCDGNAVEYTATITGFGPETVEFSVEPGYPSAAEPSVEVT 136 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQC 138 ++ P K ++L+ +I+ VE+G P +RY + +R AA+QC Sbjct: 137 LFVGYP-KQDKLEQVIRHGVELGCTHFVPFFSRYCVAAPKKEEQKNERYNRIAFEAAKQC 195 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN-- 189 LP + P L N+ C+ ++F E G+ L +L A A + Sbjct: 196 GRGVLPDVALP------LPNFGALCRSLEGYDLVLFCYELGGA--PLRQLLADAKPADGQ 247 Query: 190 ---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +A++ G EGG+ +EE E + V + LGPRILR +TA +A ++ V + G+ Sbjct: 248 RLKIALITGAEGGFAAEEAEMAANAG-VKTVGLGPRILRCETAPLAVLSAVMTLTGN 303 >gi|258511960|ref|YP_003185394.1| hypothetical protein Aaci_1993 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478686|gb|ACV59005.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 250 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 13/248 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L RLF+D + + G+ H+ + VLR + G+ +L+ + +G + ++I+ V + Sbjct: 2 LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIAEV-RPGE 59 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMG------MGAIRPVIT-RYT 117 V + R+ + + +++ K ++D ++QK E+G A R V+ Sbjct: 60 ICVHLRERAPSNEPKQRFVLVQGLAKGEKMDTILQKCTEVGAWGFVVFEAERSVVRLSGA 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNC-QIVFADETCGSE 175 + R R AA Q +PF+ + P+ L+ +H ++ DE + Sbjct: 120 AKVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLVALTEHGVDHVLVLDEEERAN 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + A A+++GPEGG E+ ++LGPRILR++TA A+A Sbjct: 180 GILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALA 239 Query: 236 LVQAICGD 243 + A GD Sbjct: 240 IALAEWGD 247 >gi|300815584|ref|ZP_07095808.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1] gi|300906490|ref|ZP_07124185.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1] gi|300401733|gb|EFJ85271.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1] gi|300531513|gb|EFK52575.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1] gi|324017218|gb|EGB86437.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 117-3] Length = 210 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRL 94 M G + LF+G + + ++I+ K S+ KV + + ++S + + + ++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGKIDDRESPLHIHLGQVMSRGEKM 59 Query: 95 DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 ++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC +P I P Sbjct: 60 EFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP 119 Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 120 AMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSADEIAMT 174 Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 175 ARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|229822870|ref|ZP_04448940.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271] gi|229787683|gb|EEP23797.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271] Length = 255 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 18/221 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV-EYQSRSQTKQSDVQY 84 D H+L V+R + G L G +L+++ V + +F++ E Q+ + + V+ Sbjct: 23 DSRHFL-RVMRSQPGAKAWLVTGDGQCYLAQLEGEVDRLAQFRLLELQAEADRVELPVEV 81 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAE 136 + K ++LDY++QK E G +P V+ ++ +DR++ AAE Sbjct: 82 TIACGLSKNDKLDYIVQKGTECGASHFQPLALSRDVVKWDSKKAGQRLDRLQKIAKEAAE 141 Query: 137 QCDILTLPFIYPPTTL-EFLLKNWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAI 192 QC L +P + P +L + L ++ D++ C + + ++ E+S + A+ + Sbjct: 142 QCHRLRIPQVAQPLSLAQLLAQSADYDACLVAYEEDAKQGEHSRLRQACQALKGQAGAKV 201 Query: 193 LI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L+ G EGG EE L F T ++LGPRILR++TA + Sbjct: 202 LVVFGSEGGLAPEEVSQLCEAGFQT-VALGPRILRAETAPI 241 >gi|182411872|ref|YP_001816938.1| hypothetical protein Oter_0047 [Opitutus terrae PB90-1] gi|177839086|gb|ACB73338.1| protein of unknown function DUF558 [Opitutus terrae PB90-1] Length = 251 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQ 83 S D+ H+L V R K GD ++ F+G+ EW+ ++ K+ KV ++ +++ ++ Sbjct: 21 SADESHHLVAVNRAKRGDTVVAFDGRGVEWICELVDDRKNAALLKVRFRQKARPLAYEIT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQ 137 + K +D +++K+ E+G I P+ + TQ + +D+ +T + AA+Q Sbjct: 81 LGQALPKGASMDAIVRKATEIGATRIAPLESERTQVHLDSDRSDRKIDKWQTAALEAAKQ 140 Query: 138 CDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIPN-VAI 192 C LP I +T + +D + L A P V Sbjct: 141 CGNPFLPEITAVQNASTFMESARGYDLKLIASLQPAAKSLKTVLAAFQATHGRTPKKVLW 200 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+GPEG + E + F P++LGP +LR +TAAV A++++ Sbjct: 201 LVGPEGDFTPAEMSLSKTAGF-EPITLGPLVLRCETAAVYALSVL 244 >gi|78169059|gb|ABB26156.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 259 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 48/230 (20%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQY 84 D+ HYL VLR++ GD + + +G W +++ Y K+ E + + + Sbjct: 41 DESHYLRRVLRLRIGDPLAISDGCGQLWQAELVDEYTVKTQPHPCEQVVQPHPR---LGL 97 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 S I+ D +++ + E+G+ AI+P+ R + DR T A EQC+ L Sbjct: 98 AVSIIRRG-FDDVVRMACELGIDAIQPLRCERTVPQAEHRPDRWNTIVREAVEQCERL-- 154 Query: 144 PFIYPPTTLEF-LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA----------- 191 + PT LE L +W ++C S +K + PNV Sbjct: 155 ---WKPTVLELNSLDSWLNSC-------------SGQKAVGVTRTPNVGPLKDWFQQKAA 198 Query: 192 ------ILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAA 233 +++GPEGG+ E E L HS V P+ LGP ILR+ TAAVA Sbjct: 199 PGQTTWLIVGPEGGWTVAELEALNDHS---VVPIHLGPSILRTSTAAVAG 245 >gi|310659094|ref|YP_003936815.1| hypothetical protein CLOST_1790 [Clostridium sticklandii DSM 519] gi|308825872|emb|CBH21910.1| conserved protein of unknown function [Clostridium sticklandii] Length = 248 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 17/215 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY- 84 + +++ VLR++ D I + + + E+L +I + K S+ +KV + + ++ VQ Sbjct: 20 EDVKHISKVLRLRVNDKIEVVDSNEKEYLCEIIAISKDSVEYKV-IEEVAIKRELGVQIK 78 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 ++ + K +LD + QK E+G+ +I PV + + + R++ AA+Q Sbjct: 79 VYQGVPKGQKLDLIAQKLTEIGVYSITPVEFKRCVSSIKEEKEDKKIARLQRIIYEAAKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHA---IAHIPNVAIL 193 +P I P T + L+K N IVF + C EN+L+ A ++ I ++ ++ Sbjct: 139 SKRNHIPKIESPMTFKELVKELKSNTINIVFYE--CEEENNLKSYFASLDLSDIESIGVI 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +GPEGG EE E L S L+LG RILR++T Sbjct: 197 VGPEGGITPEEIELLES-NGCKVLTLGARILRTET 230 >gi|332526877|ref|ZP_08402970.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax benzoatilyticus JA2] gi|332111319|gb|EGJ11303.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 20/239 (8%) Query: 9 RLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL++D PL T G H V R++ G ++LF+G EW +++ +G+S + Sbjct: 4 RLYLDIPLAAGSTLALPPGAARHV--QVRRLQPGHALVLFDGGGAEWPAEVVAMGRSEVT 61 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +V E Q+ + +R+D +++K+ E+G+ AI+P++ + + Sbjct: 62 VRVGEPQAVERELPFAATLAVGMPANDRMDALVEKATELGVAAIQPLVCERSVLRLDGER 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSE 175 + ++A EQC +P I P L L D +++ + G+ Sbjct: 122 AERKQAHWQAVAVAACEQCGRTRVPRIQPVRPLAAWLGALPAEQDLGTRLLLSPRP-GAR 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+L A A L GPEGG S +E + LGPR+LR+DTA +A + Sbjct: 181 PLAERLPAGA---GFCTLSGPEGGL-SPAEEAAAVAAGFAAVGLGPRVLRADTAPLAVL 235 >gi|292487087|ref|YP_003529957.1| hypothetical protein EAMY_0599 [Erwinia amylovora CFBP1430] gi|292900528|ref|YP_003539897.1| hypothetical protein EAM_2830 [Erwinia amylovora ATCC 49946] gi|291200376|emb|CBJ47504.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291552504|emb|CBA19549.1| UPF0088 protein yggJ [Erwinia amylovora CFBP1430] gi|312171190|emb|CBX79449.1| UPF0088 protein yggJ [Erwinia amylovora ATCC BAA-2158] Length = 243 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I + S + +++ VLRM G + LF+G + ++I K Sbjct: 2 RIPRIYQPRPLQIGNEIALSEEAANHVGRVLRMSAGQMLELFDGTSLVFAAEIIQADKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 SR +++S + + + ++++ +QK+VE+G+ I P+ + Sbjct: 62 VCVRINASREDSRESPLHLHLGQVMSRGEKMEFTVQKAVELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M + + I+A EQC +P + L+ + ++ S N+ Sbjct: 122 ERLAKKMQQWQKIAIAACEQCGRNCIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----LPIERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|228933130|ref|YP_377200.2| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9902] Length = 243 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 48/230 (20%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQY 84 D+ HYL VLR++ GD + + +G W +++ Y K+ E + + + Sbjct: 25 DESHYLRRVLRLRIGDPLAISDGCGQLWQAELVDEYTVKTQPHPCEQVVQPHPR---LGL 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 S I+ D +++ + E+G+ AI+P+ R + DR T A EQC+ L Sbjct: 82 AVSIIRRG-FDDVVRMACELGIDAIQPLRCERTVPQAEHRPDRWNTIVREAVEQCERL-- 138 Query: 144 PFIYPPTTLEF-LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA----------- 191 + PT LE L +W ++C S +K + PNV Sbjct: 139 ---WKPTVLELNSLDSWLNSC-------------SGQKAVGVTRTPNVGPLKDWFQQKAA 182 Query: 192 ------ILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAA 233 +++GPEGG+ E E L HS V P+ LGP ILR+ TAAVA Sbjct: 183 PGQTTWLIVGPEGGWTVAELEALNDHS---VVPIHLGPSILRTSTAAVAG 229 >gi|213963907|ref|ZP_03392153.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno] gi|213953416|gb|EEB64752.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno] Length = 241 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 9/212 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-- 84 ++ ++ VLR K GD + + NGK + +++ + + E + T QS Y Sbjct: 23 EESQHIVKVLRKKVGDVLHITNGKGQLFEAQLDFASPK---QCEVRILKCTTQSPRSYYL 79 Query: 85 --IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 + +P K N R ++ ++K+ E+G+ I P+I +++ T ++R +SA +Q Sbjct: 80 HLVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQC 139 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 LP + P K + + +E L + +LIGPEG + Sbjct: 140 YLPKLNAPIASSQFFKAMKTDTSAKYIAHCYENEKRLFSRTLTPFPERITVLIGPEGDFS 199 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + E T FV P+SLG LR++TAAV A Sbjct: 200 TTELNTALQQAFV-PISLGDTRLRTETAAVVA 230 >gi|312622233|ref|YP_004023846.1| hypothetical protein Calkro_1166 [Caldicellulosiruptor kronotskyensis 2002] gi|312202700|gb|ADQ46027.1| protein of unknown function DUF558 [Caldicellulosiruptor kronotskyensis 2002] Length = 243 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + +++ VLR +EGD I L +G + ++ S+I + K R K+ ++++ + + IF Sbjct: 22 EDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKD-RIKLLIENKTLNDRESTKNIF 79 Query: 87 ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138 IK ++D+++QK E+G+ I PV+++ ++ ++R R A +QC Sbjct: 80 LFQCIIKNQKMDFIVQKVTEIGVKTIVPVVSKRVVIDISEKQEKKVERWRKIAQEAQKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I P + + + + I+F SE S + + N+ IL+GPEG Sbjct: 140 LRPMPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS--EWCISSDYNNIGILVGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE E L + V +SLG RILRS+TA++AA++++ G+ Sbjct: 198 GFEEEEIEELKTFKNVKVISLGKRILRSETASIAALSILMHELGE 242 >gi|300925058|ref|ZP_07140976.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1] gi|300418804|gb|EFK02115.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1] Length = 210 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRL 94 M G + LF+G + + ++I+ K S+ KV + + ++S + + + ++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGQLDDRESPLHIHLGQVMSRGEKM 59 Query: 95 DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 ++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC +P I P Sbjct: 60 EFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP 119 Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 120 AMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSADEIAMT 174 Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 175 ARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|158336565|ref|YP_001517739.1| 16S ribosomal RNA methyltransferase RsmE [Acaryochloris marina MBIC11017] gi|158306806|gb|ABW28423.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 263 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 18/244 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L+RL + Q + DQ HYL VLR+ GD + NG+ W++++ Sbjct: 6 AQLQRLAIAPEQLQDHQIHLTSDQQHYLCDVLRLGHGDRFIAMNGQGQLWVAELQ---PD 62 Query: 65 IRFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120 RF ++ + + + + +P K N D +++ E+G+ I P+I++ T + + Sbjct: 63 ARFARRLKALGEQTELAMPMMLLAAPPKGNHFDQVVRSVTELGVSYIVPLISQRTLLKPS 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R + AAEQ +P + P + E + D Q + C E S Sbjct: 123 SNRIQRWQRIATEAAEQSHRQIIPKVLDPASFEKTVMQDD---QGDWQRYICTVEPSAPN 179 Query: 181 -LHAIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 LH ++ VA+++GPEGG+ E + + + +SLG R LR+ TA A Sbjct: 180 FLHCLSQALDQESQSGVAVMVGPEGGWTETETQQAQTAGY-QAVSLGQRTLRAVTANYMA 238 Query: 234 MALV 237 +++ Sbjct: 239 VSIA 242 >gi|332886055|gb|EGK06299.1| hypothetical protein HMPREF9456_00173 [Dysgonomonas mossii DSM 22836] Length = 234 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQY 84 ++ + VLR KEGD I L +GK + ++I ++ Q K + ++ Sbjct: 20 EEAQHCIKVLRKKEGDEIFLTDGKGSFYDAEIIQANPKHCHVNILKTIVQPKNWKCNIHI 79 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 F+P K +R+++ +K+ E+G+ P++ +++ + R+ +SA +Q L Sbjct: 80 AFAPTKNIDRIEWFAEKATEIGVDRFSPLLCHHSERREIKLQRIEKILVSAMKQSQKAIL 139 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + + +K D Q A + SL+ + + NV ILIGPEG + + Sbjct: 140 PQLDEMQSFSKFVKQ-DFEAQKFIAHCYPSEKKSLKDAYKLGE--NVLILIGPEGDFSEQ 196 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E F P++LG LR++TAA+AA Sbjct: 197 EVEEAMKNGF-QPVTLGESRLRTETAALAA 225 >gi|229220687|ref|YP_620039.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia AU 1054] gi|229220796|ref|YP_834281.2| hypothetical protein Bcen2424_0635 [Burkholderia cenocepacia HI2424] Length = 255 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D ++ VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + P L Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAP 173 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 174 ADGELRLLLSPRASSPFASLPDAPPAAA---VTLLIGPEGGLSPDEEHAARARGF-TALS 229 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255 >gi|33595836|ref|NP_883479.1| hypothetical protein BPP1163 [Bordetella parapertussis 12822] gi|33600365|ref|NP_887925.1| hypothetical protein BB1379 [Bordetella bronchiseptica RB50] gi|33565915|emb|CAE36464.1| conserved hypothetical protein [Bordetella parapertussis] gi|33567964|emb|CAE31877.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 246 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 15/223 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSP 88 H+ VLR++ G ++LF+G GE+ + + GK+ ++ + R + + Sbjct: 26 HHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGL 85 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142 +++D++++K+VE+G + P+ + + + + +AAEQC Sbjct: 86 PAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNR 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGG 199 L + P L L + C + L+ A+A ++ +L+GPEGG Sbjct: 146 LMAVDAPQALAAWLAQAPGAALRLL----CHPQAELDLAGALARHAAHDDICLLVGPEGG 201 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + EE E + V + GPR+LR++TA +A +A V AI G Sbjct: 202 WSDEELEQARAA-GVQAVRFGPRVLRTETAGIALIAAVSAIRG 243 >gi|260062552|ref|YP_003195632.1| 16S ribosomal RNA methyltransferase RsmE [Robiginitalea biformata HTCC2501] gi|88784119|gb|EAR15289.1| hypothetical protein RB2501_13214 [Robiginitalea biformata HTCC2501] Length = 235 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 6/216 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYI 85 ++ ++ VLR K GD + + NGK ++++I ++R K + Sbjct: 21 EESRHIVKVLRKKAGDQLHITNGKGYLFVAEILEANPERCMGKLLETRKFHPKMYSLHVA 80 Query: 86 FSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K T+R ++ ++K+ E+G+ I PVI + ++ M+R++ A +Q LP Sbjct: 81 VAPTKKTDRFEWFLEKATEIGIDRITPVICQRSERRKLPMERMQRVVQEAMKQSLRTYLP 140 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + P L L+ + + C + ++ +A +V ILIGPEG + +E Sbjct: 141 ELEEPVALREFLEREQPVLKFI---AHCEEDEKMDLKRRVAADKDVIILIGPEGDFTHDE 197 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + F+ P+SLG LR++TAA+ A V I Sbjct: 198 IQMACEKGFI-PVSLGEYRLRTETAALVACTTVNLI 232 >gi|227888501|ref|ZP_04006306.1| protein of hypothetical function DUF558 [Escherichia coli 83972] gi|300900237|ref|ZP_07118421.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1] gi|300928111|ref|ZP_07143656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1] gi|300954208|ref|ZP_07166673.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1] gi|300980098|ref|ZP_07174841.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1] gi|301049259|ref|ZP_07196232.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1] gi|301643701|ref|ZP_07243740.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1] gi|227834770|gb|EEJ45236.1| protein of hypothetical function DUF558 [Escherichia coli 83972] gi|300298955|gb|EFJ55340.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1] gi|300318792|gb|EFJ68576.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1] gi|300356253|gb|EFJ72123.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1] gi|300409355|gb|EFJ92893.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1] gi|300463877|gb|EFK27370.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1] gi|301077903|gb|EFK92709.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1] gi|315289506|gb|EFU48901.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 110-3] gi|315293940|gb|EFU53292.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 153-1] gi|324011803|gb|EGB81022.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 60-1] Length = 210 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRL 94 M G + LF+G + + ++I+ K S+ KV + + ++S + + + ++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGQIDDRESPLHIHLGQVMSRGEKM 59 Query: 95 DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 ++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC +P I P Sbjct: 60 EFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP 119 Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 120 AMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSADEIAMT 174 Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 175 ARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|170695362|ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M] gi|170139762|gb|EDT07944.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M] Length = 246 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 23/226 (10%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSPI 89 VLR++ GD+I+LFNG+ GE+ ++++ + + IR + + + + + Q I S Sbjct: 28 VLRLQVGDSIVLFNGEGGEYSAELAAIERRAVTVKIREFRDIEVETPYRLTLAQGIAS-- 85 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT------ISAAEQCDILTL 143 +++D++I+K+VE+G + P+ T + R + ++ EQC L Sbjct: 86 -GDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGERAARRHAHWEGIVRASCEQCGRNRL 144 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADE-----TCGSENSLEKLHAIAHIPNVAILIGPEG 198 P + P + L ++ DE + + L A V +L+GPEG Sbjct: 145 PEVMPVREIATWLSAMP---RVPAGDELRILLSPRASIPFSALPAAPPKGPVTVLVGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G+ + E+ F + LGPR+LR++TA +A ++ + A G W Sbjct: 202 GFSAAEEAAAMDHGFQA-VGLGPRVLRTETAGMAVLSALAAGWGGW 246 >gi|124265393|ref|YP_001019397.1| 16S ribosomal RNA methyltransferase RsmE [Methylibium petroleiphilum PM1] gi|124258168|gb|ABM93162.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 245 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 31/241 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R VD PL + ++ VLR++ GD + LF+G+ EW +++ +G+S Sbjct: 1 MPRFLVDMPLADGLEAALPAAAARHV-QVLRLQPGDGLTLFDGRGSEWEARVVQMGRS-- 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI-------KTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117 E + R Q + + PI R+D++++K+ E+G+ ++P++ + Sbjct: 58 ---EVRVRVGASQPVDRELPLPITLAVGMPANERMDWLVEKATELGVSTLQPLVCERSVL 114 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--- 170 + + + +AAEQC TLP + P W + + Sbjct: 115 RLGGERADRKLAHWQGVASAAAEQCGRTTLPRLLPVRA----FGEWQRALRPDVTEARFV 170 Query: 171 ---TCGSENSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 G+ +E L A+ + L GPEGG + E + + P++LGPR+LR+ Sbjct: 171 LSLAEGTRPFVEALPPALRAGQGLLFLSGPEGGLCNTEDAQARAA-GLQPITLGPRVLRA 229 Query: 227 D 227 + Sbjct: 230 E 230 >gi|255034262|ref|YP_003084883.1| hypothetical protein Dfer_0449 [Dyadobacter fermentans DSM 18053] gi|254947018|gb|ACT91718.1| protein of unknown function DUF558 [Dyadobacter fermentans DSM 18053] Length = 235 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 10/213 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ + + VLR+ GD I + NGK +++ G+ + ++V ++ + V Sbjct: 17 EEARHSSKVLRLGSGDIIQVTNGKGLLQKCRLNIQGRRVGYEVIESKTAERRPFAVHMAI 76 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTISAAEQCDIL 141 +P K R ++M++K E+G+ I V+T +T N N+ R+ +A +Q Sbjct: 77 APTRKAERNEWMVEKMTEIGVERIDFVVTEHTNPETLNRVVNLTRLNRIAAAAMKQSQQF 136 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I E +KN +++ + E E+ K+ A + +LIGPEG + Sbjct: 137 YMPVITVNNKYEPFIKNAGDEVRLIAYVPEQNTVEHVFSKIKKGA---DTTLLIGPEGDF 193 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E E F T +SLGP LR++TAAVA Sbjct: 194 SPKEVELALQAGFQT-VSLGPTRLRTETAAVAG 225 >gi|229597247|ref|YP_001897009.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phytofirmans PsJN] Length = 251 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 26/255 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + Sbjct: 6 MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64 Query: 64 --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 IR + + + + + Q I +++D++I+K+VE+G + P+ T + Sbjct: 65 MVKIREFRDIEVEAPYRLTLAQGIAG---GDKMDWLIEKAVELGASSFVPLTTTRSV-VR 120 Query: 122 YNMDRVR-------TYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + DR + ++ EQC LP + P + L + + + +I+ + Sbjct: 121 LSGDRAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSP 180 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + S L + V +L+GPEGG+ + E+ + F T + LGPR++R++TA Sbjct: 181 R---ASISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETA 236 Query: 230 AVAAMALVQAICGDW 244 +A ++ + A G W Sbjct: 237 GIAVLSALAAGWGGW 251 >gi|105891901|gb|ABF75066.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia cenocepacia AU 1054] gi|116646747|gb|ABK07388.1| protein of unknown function DUF558 [Burkholderia cenocepacia HI2424] Length = 262 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D ++ VLR++ GD + LF+G G++ +++ Sbjct: 15 AAVPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 67 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 68 ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + P L Sbjct: 121 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAP 180 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 181 ADGELRLLLSPRASSPFASLPDAPPAAA---VTLLIGPEGGLSPDEEHAARARGF-TALS 236 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 237 LGPRVLRTETAGAAVLAALAARWGGW 262 >gi|297529333|ref|YP_003670608.1| hypothetical protein GC56T3_0989 [Geobacillus sp. C56-T3] gi|297252585|gb|ADI26031.1| protein of unknown function DUF558 [Geobacillus sp. C56-T3] Length = 258 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 13/217 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 SGD H++A V+RMK GD I+ + +I + ++ ++ +++ Sbjct: 19 SGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHVQVRIVQWKEERSELPVRI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K + + +IQK E+G A R V+ + ++R + AAE Sbjct: 79 YIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAKKAEKKVERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAIL- 193 Q + +P + P + LL +FA E L A+ P A+L Sbjct: 139 QAERTVVPDVRAPLSFVELLAFGQTVDVRLFAYEKEARNARHAALPALLSRLRPGGALLA 198 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG+ EE E L F +P SLGPRILR++TA Sbjct: 199 VFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETA 234 >gi|260892511|ref|YP_003238608.1| protein of unknown function DUF558 [Ammonifex degensii KC4] gi|260864652|gb|ACX51758.1| protein of unknown function DUF558 [Ammonifex degensii KC4] Length = 251 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 18/234 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R+FV +T+ ++ HYL VLR++ GD + + DGE ++ + + R Sbjct: 1 MRRVFVLPEELGETKVILPPEESHYLLSVLRLRAGDRVAVH---DGEGRARAGIILRESR 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 +VE + +F + K ++D ++QK+ E+G+ I P++T Sbjct: 58 GRVEVELGEYLSLPPEPPVFVTLFQGIPKGEKMDLVVQKATELGVSRIVPLLTERVVVQW 117 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R + A QC T+P I T+L L+ + + E G Sbjct: 118 DGERARKRRERWQRLAREAVRQCGRSTVPRIKEVTSLPQALEELEPETVGIMPWE--GER 175 Query: 176 N-SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 N SL H VA+ IGPEGG+ SE + L V ++LGPRILR++T Sbjct: 176 NLSLRSCLHSRHPRRVALFIGPEGGF-SEREVALARERGVFTVTLGPRILRTET 228 >gi|187716561|gb|ACD17785.1| protein of unknown function DUF558 [Burkholderia phytofirmans PsJN] Length = 246 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 26/255 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + Sbjct: 1 MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59 Query: 64 --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 IR + + + + + Q I +++D++I+K+VE+G + P+ T + Sbjct: 60 MVKIREFRDIEVEAPYRLTLAQGIAG---GDKMDWLIEKAVELGASSFVPLTTTRSV-VR 115 Query: 122 YNMDRVR-------TYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169 + DR + ++ EQC LP + P + L + + + +I+ + Sbjct: 116 LSGDRAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSP 175 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + S L + V +L+GPEGG+ + E+ + F T + LGPR++R++TA Sbjct: 176 R---ASISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETA 231 Query: 230 AVAAMALVQAICGDW 244 +A ++ + A G W Sbjct: 232 GIAVLSALAAGWGGW 246 >gi|194477277|ref|YP_002049456.1| hypothetical protein PCC_0836 [Paulinella chromatophora] gi|171192284|gb|ACB43246.1| hypothetical protein PCC_0836 [Paulinella chromatophora] Length = 257 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L+RLF+ L + K + HYL VLR + GD + +G W + + ++ Sbjct: 3 ELRRLFISHHRLGYSNEFKLRASESHYLTKVLRYRIGDCFAVIDGVGRLWSAILMDRERA 62 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHY 122 + K+ S S + + D ++Q + E+G+ I+P+I ++ N Sbjct: 63 QLEQKITIPLVSTMAPSPQLELAIALPRRGFDDLLQITSELGIDRIQPLIVKHCVTNKDI 122 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI------VFADETCGSEN 176 ++DR + + EQC+ L PF P ++ D + +FA G Sbjct: 123 SLDRCKAILQESTEQCERLWTPFCGDPCLFYNWIEQKDSDAAKNETRVKLFATTRRGGLI 182 Query: 177 SLEKL-----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 SL KL I+ ++++ IGPEGG+ E++ + + +SLGPRIL++ TAA+ Sbjct: 183 SLVKLLNQNSSKISLSQSLSLAIGPEGGWTLNEEQRAEAAGW-QAVSLGPRILKTRTAAI 241 Query: 232 AAMALV 237 A A++ Sbjct: 242 VAGAIM 247 >gi|297566407|ref|YP_003685379.1| hypothetical protein Mesil_1997 [Meiothermus silvanus DSM 9946] gi|296850856|gb|ADH63871.1| protein of unknown function DUF558 [Meiothermus silvanus DSM 9946] Length = 232 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 14/220 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+LA VLR + GD + +F+G+ E + + V + ++ +++ V Sbjct: 18 TGREAHHLADVLRARPGDAVTVFDGEGLEGRAVVRSVEDGVVELEVTETWPASREVPVPV 77 Query: 85 IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCD 139 + + +K ++L +++ + E+G I P++ ++ + + R+R + AA+Q + Sbjct: 78 VLYVALLKGDKLADVVRAATELGAIKIIPLVCVHSVAKEMGEGKLLRLRRVALEAAKQSE 137 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 T+P + P L + + T + LE VAI GPEGG Sbjct: 138 RTTIPEVLAPIPLSAI--PPVEQGLVAHPGGTLRVRDILELSR------PVAIATGPEGG 189 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +E + L F TP++LG RILR++TA +A ++LV A Sbjct: 190 FSEDEMQILLERGF-TPVTLGRRILRAETAPLALLSLVTA 228 >gi|284052447|ref|ZP_06382657.1| 16S ribosomal RNA methyltransferase RsmE [Arthrospira platensis str. Paraca] gi|291566292|dbj|BAI88564.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 252 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 + Q HYL VLR+++GD ++ +G+ G WL+ I G++ + ++ + Sbjct: 22 TAGQQHYLGRVLRLQQGDRFIILDGRGGWWLA-IWKGGQNATVVEPIRVNNELPIPVTLW 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142 + P K + + +++ + E+G+ + P+I+ T + + R R AAEQ + Sbjct: 81 VSMP-KGSGFEEIVRCTTELGVSRLVPIISARTVVVPSPQKLARWRRIATEAAEQSERQI 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL----------HAIAHIPNVAI 192 LP I P +++ + + V C + L ++ N + Sbjct: 140 LPEITDPLSIQQAWETLSDQGEEV-DKYICVARGDFPHLLNCLLASRTGQGKGYVYNSLL 198 Query: 193 L-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L IGPEGG+ + E E + F P+SLG RILRS TA + A++LV A+ Sbjct: 199 LAIGPEGGWTTPEVEEAINRGF-QPVSLGSRILRSVTAPMVALSLVAAV 246 >gi|254672585|emb|CBA06262.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 153 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 17/160 (10%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 +D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P + Sbjct: 1 MDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVL 60 Query: 148 PPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYHSEE 204 P E L K + +++ S N KL I H P+ AI ++GPEGG+ +E Sbjct: 61 PIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWTEQE 113 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 114 EQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 152 >gi|171909516|ref|ZP_02924986.1| hypothetical protein VspiD_00050 [Verrucomicrobium spinosum DSM 4136] Length = 253 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 12/223 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84 GD+ + V+R GD I F+G +I + GK++ +V + + Sbjct: 25 GDEARHCTSVMRHTAGDEITTFDGAGISARCRIVATTGKTVELEVVETLSTPAPAVSISL 84 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 + S K + ++++++K+VE+G+ AI PV+T T + ++ + + A +QC Sbjct: 85 VQSVPKGSNMEWIVEKAVELGVNAIHPVLTARTVVKLDKKEAAKKQEKWQRLALEACKQC 144 Query: 139 DILTLPFIYPPTT-LEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAILI 194 LP I+PP E + H+ +I+ A D E ++ + I + + + Sbjct: 145 GQNWLPVIHPPAPYAEVMAGLPPHDLRIIAAIQDDSKPLKEILKDRAKQGSVISSTLLCV 204 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEG + E +T V P+SLGP ILR +TA + ++++ Sbjct: 205 GPEGDFTPAEYQTARDHGCV-PMSLGPIILRVETATMYGLSVL 246 >gi|71065526|ref|YP_264253.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter arcticus 273-4] gi|71038511|gb|AAZ18819.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 294 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 49/255 (19%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQSDVQYI 85 H+ VLR GD +LF+G GE+ ++ + K + RS + + + Sbjct: 39 HHWCRVLRANIGDQGILFDGFGGEYQVQLLAISKKHATVTLLAHTHDDRSAATFTKIGLV 98 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCD 139 S + R+DY IQKS E+G+ AI+ + + + + + + I+A EQC Sbjct: 99 MS--RGERMDYAIQKSTELGVTAIQLLSSHHGEVNLKPTQVEKKLAHWQQVAIAACEQCG 156 Query: 140 ILTLPFIYPP--------------------------TTL------EFLLKNWDHNCQIVF 167 + P I P TTL + L + D Q+ Sbjct: 157 LNRPPLILAPIAINDWLKPVTTTTPVEMEAAVSPMVTTLSQDTYYQVLQQPADLRLQLSV 216 Query: 168 --ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 A + ++ L L A P + +LIGPEGG EE + S+ F P +G R+LR Sbjct: 217 PAAGQPAMPDSLLTTLQQPA--PYIELLIGPEGGLSDEECKQAQSVGF-EPWQIGARVLR 273 Query: 226 SDTAAVAAMALVQAI 240 ++TA V A+A +QA+ Sbjct: 274 TETAPVVALATLQAL 288 >gi|261418481|ref|YP_003252163.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. Y412MC61] gi|319767558|ref|YP_004133059.1| hypothetical protein GYMC52_2535 [Geobacillus sp. Y412MC52] gi|261374938|gb|ACX77681.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC61] gi|317112424|gb|ADU94916.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC52] Length = 258 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 13/217 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 SGD H++A V+RMK GD I+ + +I + ++ ++ +++ Sbjct: 19 SGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHVQARIVQWKEERSELPVRI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K + + +IQK E+G A R V+ + ++R + AAE Sbjct: 79 YIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAKKAEKKVERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAIL- 193 Q + +P + P + LL +FA E L A+ P A+L Sbjct: 139 QAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARHAALPALLSRLRPGGALLA 198 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG+ EE E L F +P SLGPRILR++TA Sbjct: 199 VFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETA 234 >gi|227431610|ref|ZP_03913646.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352602|gb|EEJ42792.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 245 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 25/250 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R F++ P+ + A D + + VLR + G + L +++ + + I Sbjct: 1 MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGEVTLIDYEVI 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQN 119 KV + S + DV + SP+K +R D+ IQK+ E+G+ I + + + + Sbjct: 61 NIKVIDRYYSNVELPIDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVADWRKQ 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCG 173 + R +AAEQ L +P E + W Q +V +++ Sbjct: 121 QEKKIKRFNKIAKAAAEQAHRLVVP--------EIIFTTWQKTIQMPKNTGLVAWEKSAR 172 Query: 174 SENSLEKLHAIAHIPNVAILI---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 S + A++ +P+ L+ GPEGG E E L F LGPRILR++TA Sbjct: 173 DGESAALIAAVSAVPSGEKLVCVFGPEGGLTENEIEELRLQNFELA-GLGPRILRAETAP 231 Query: 231 VAAMALVQAI 240 + AM+ + + Sbjct: 232 LYAMSAISVL 241 >gi|257483559|ref|ZP_05637600.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 151 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 14/157 (8%) Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFI 146 R+D+ IQK+ E+G+ I P+++ + + ISA EQC +P I Sbjct: 2 RMDWAIQKATELGVSEITPIVSERCEVRLKDERAEKRQAHWQQIAISACEQCGRSVVPVI 61 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 + P L +K+ + + ++V E L + ++A LIGPEGG + E + Sbjct: 62 HAPMPLAEWIKHTEADLKLVL-------HPVAEPLTSHDKPASLAFLIGPEGGLNDAEVD 114 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + F LGPR+LR++TA V A+++ Q + GD Sbjct: 115 QAQAAGFHA-ARLGPRVLRTETAPVVALSVAQQLWGD 150 >gi|319400913|gb|EFV89132.1| RNA methyltransferase family protein [Staphylococcus epidermidis FRI909] Length = 250 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 14/223 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTK-QSDVQY 84 + YH++ +V+R KEG NI++ + + K IS +SI K+E + + T+ ++ Sbjct: 22 EDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQSIEIKLEEKQQINTELPQNITI 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 IK ++ ++MIQK+ EMG R V+ + R + AAEQ Sbjct: 82 CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VAILI 194 LT+P I + L+ + + ++ A E L + I V I+ Sbjct: 142 YRLTIPNIKFKSNLKEIYGMINQYDYVLIAYEEQAKHGELSQFKQTIKQFKTQDRVLIIF 201 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG E + T + LGPRILR++TA + A++ V Sbjct: 202 GPEGGLSDSEIALFDDVS--TIVGLGPRILRAETAPLYALSAV 242 >gi|15894567|ref|NP_347916.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium acetobutylicum ATCC 824] gi|15024214|gb|AAK79256.1|AE007641_2 Uncharacterized conserved protein, ortholog of YQEU B.subtilis [Clostridium acetobutylicum ATCC 824] gi|4104515|gb|AAD02055.1| unknown [Clostridium acetobutylicum DSM 1731] gi|325508699|gb|ADZ20335.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 250 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 GD ++ VLR+K G+ + + + E+L +I + K +++ K+ + Y Sbjct: 20 GDDVKHIYKVLRLKVGEKVSINDCNSHEFLGEIEQINKENVKVKIIENLDINNESPLNVY 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQC 138 ++ K ++D ++QK+ E+G+ I P+IT + ++ +DR AA+Q Sbjct: 80 LYQGFPKAAKMDIIVQKNTELGIREIIPLITQRVVVKNEKSELKKVDRWNRIAFEAAKQS 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH---IPNVAILIG 195 +P + + ++ +V + ++K+ A I NVAI+IG Sbjct: 140 KRSVIPKVKDIASFNSAIEELKE-MDLVLVPYENQEKVGMKKVAAAIEKNKIKNVAIVIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ E E L + ++LGPRILR++TA + +LV Sbjct: 199 PEGGFEETEIEELKKIGAYI-ITLGPRILRTETAGLVCTSLV 239 >gi|255534646|ref|YP_003095017.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae bacterium 3519-10] gi|255340842|gb|ACU06955.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae bacterium 3519-10] Length = 257 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 20/222 (9%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--- 79 K + ++ ++ VLRM++G+ I + +GK K+ GK + V S+T Q Sbjct: 39 KINEEEQQHILKVLRMRDGEEISVTDGKGNLATGKLITEGKKVSLNV-----SETHQNLP 93 Query: 80 ---SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135 + + +P K +R+++ ++K+ EM + + + T T+ + N+D++R ++SA+ Sbjct: 94 NFSTQLHIAIAPTKNIDRIEFFLEKATEMAVSEVTILQTEKTERKNLNIDKLRKQSVSAS 153 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAIL 193 +Q P + T +KN D V SLE+ L I + L Sbjct: 154 KQSLRYHFPKVNDITKFSDFIKNLDPETTFV-----AHCNESLERFNLKDIQPQKHTTFL 208 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEG + SE++ + + + +SLG + LR++TA + A Sbjct: 209 IGPEGDF-SEKEINMLADKGIKAVSLGNQRLRTETAGIFVAA 249 >gi|326202057|ref|ZP_08191927.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM 2782] gi|325987852|gb|EGD48678.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM 2782] Length = 250 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 19/250 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ + G+ + +L VLR + D + G ++ ++I + S Sbjct: 1 MSRYFVEEAQIANGRINIVGEDFQHLKKVLRAQLKDEVTACCG-GFDYTAEIEEINDSSI 59 Query: 67 FKVEYQSRSQTKQSDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-------RYT 117 + +S ++ +F + K+++++ +IQK VE+G+ I PVIT Sbjct: 60 ICIITDVNKNFTESPLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPVITDRCVSRINTD 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIV--FADETCGS 174 ++ + R + AA+QC+ T+P +YP T E + K I+ + G Sbjct: 120 KDAKNKLARWQKIAREAAKQCNRGTIPNILYPITFKEAVEKASQAELAIIPYEKESAVGL 179 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET-LHSLPFVTPLSLGPRILRSDTAAVAA 233 +N + + I + +I+IGPEGG+ EEKE + V +SLGPRILR++TA + A Sbjct: 180 KNIVPRYEGIT---SGSIIIGPEGGF--EEKEVQMAEDRGVKKISLGPRILRTETAGMVA 234 Query: 234 MALVQAICGD 243 ++L+ GD Sbjct: 235 LSLLMYELGD 244 >gi|319954606|ref|YP_004165873.1| ribosomal RNA small subunit methyltransferase e [Cellulophaga algicola DSM 14237] gi|319423266|gb|ADV50375.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga algicola DSM 14237] Length = 238 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 9/220 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR---FKVEYQSRSQTKQSDVQ 83 ++ ++ VLR KEGD + L NGK +L + + +R K+ ++ + + Sbjct: 21 EESKHIVKVLRKKEGDILHLTNGKG--YLFEAEILRADLRKCAVKIIKETYHKKNSPALH 78 Query: 84 YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 + +P K N R ++ ++K+ E+G+ I P+I ++ +DR+ +A +Q Sbjct: 79 LVVAPTKMNDRYEWFLEKATEIGVTEITPIICDNSERKVLKLDRMEKVLQAAMKQSLQFH 138 Query: 143 LPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P + P + + ++ N H + F C ++ + N ILIGPEG + Sbjct: 139 KPILNEPISAKTFIEQNNPTHQEEQQFFIAHCEETEKIDLKERLIPSHNALILIGPEGDF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + E E L + P+SLG LR++TAA+ A A ++ I Sbjct: 199 STSEIEIALRLGY-KPVSLGENRLRTETAAIFACATMKLI 237 >gi|161525920|ref|YP_001580932.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans ATCC 17616] gi|189349361|ref|YP_001944989.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans ATCC 17616] gi|160343349|gb|ABX16435.1| protein of unknown function DUF558 [Burkholderia multivorans ATCC 17616] gi|189333383|dbj|BAG42453.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 254 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 43/265 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEIDKRSALAQIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----PTTLEFLLKNW 159 P V+ + + R ++ EQC +P + L+ L Sbjct: 114 VPLSTARGVVKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLPPPA 173 Query: 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219 D +++ + SL A V +LIGPEGG +E+ + F T LSL Sbjct: 174 DGELRLLLSPRASIPFASLPDAPPAAP---VTLLIGPEGGLSPDEEAAARARGF-TALSL 229 Query: 220 GPRILRSDTAAVAAMALVQAICGDW 244 GPR+LR++TA A +A + A G W Sbjct: 230 GPRVLRTETAGAAVLAALAARWGGW 254 >gi|291519248|emb|CBK74469.1| RNA methyltransferase, RsmE family [Butyrivibrio fibrisolvens 16/4] Length = 243 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 12/229 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 +G H+L V+R++ G+ I + ++ ++S Y+ K + V + S T+ + Sbjct: 18 TGQDAHHLTKVVRLRPGEKIRVSVSDGSNYICEVSDYIEKDLVATVVEEVPS-TELPNKI 76 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136 Y+F I K +R++ +I+K VE+G I PV + + ++R ++ SAAE Sbjct: 77 YLFQAIPKGDRMETIIEKCVELGAYEIIPVEMKNCIVKLDDKKKKSKVERYQSIAKSAAE 136 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAHIPNVAILIG 195 Q +P I+ + + + I+ E+ G +++ + L + ++ + IG Sbjct: 137 QSKRSIIPGIHSVMSFKEAFEYAKALDVILLPFESKNGMKDTYDCLAGLKKGQSIGVFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 PEGG+ E E + V +SLG RILR+DTAA+ +++++ C ++ Sbjct: 197 PEGGFAPNEIEMVED--SVQLISLGHRILRTDTAAICSLSMLMLKCEEF 243 >gi|227538374|ref|ZP_03968423.1| protein of hypothetical function DUF558 [Sphingobacterium spiritivorum ATCC 33300] gi|227241756|gb|EEI91771.1| protein of hypothetical function DUF558 [Sphingobacterium spiritivorum ATCC 33300] Length = 237 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 9/212 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQY 84 ++ + VLR+ D + L +G+ G + ++I ++ ++ +E Q Q + Sbjct: 21 EESKHAVRVLRLANRDQVHLIDGRGGFYRAEIIDAHPKRTALQIIEIQEAFQKPSYHLHM 80 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K R ++ ++K+ E+G+ I PVI+ +++ DR+ ++A +Q + Sbjct: 81 AVAPTKNIERFEWFLEKATEVGVQEITPVISEHSERKEVKPDRLNKVIVAAMKQSYKAYM 140 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEGGYH 201 P + P TL LK + Q+ +S +K P + ILIGPEG + Sbjct: 141 PKLNPAITLTNFLKQQE---QVSAQKAIAHCVDSEKKYLGQVFTPQQDYVILIGPEGDFS 197 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +EE S FV P+SLG LR++TAA+ + Sbjct: 198 TEEISKTISSGFV-PISLGEARLRTETAALTS 228 >gi|238924264|ref|YP_002937780.1| hypothetical protein EUBREC_1902 [Eubacterium rectale ATCC 33656] gi|238875939|gb|ACR75646.1| protein of unknown function DUF558 [Eubacterium rectale ATCC 33656] Length = 246 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 110/222 (49%), Gaps = 9/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ I + + + IS V + ++ + T+ + Sbjct: 19 TGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSVLDDEVIAAIDSADETGTELDNHI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 ++ + K ++++ +IQK+VE+G+ I PV + + + R + SAA+ Sbjct: 79 VLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEKKAAKKLQRWQAIAESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + P T + LK + + +V + G + + E + + + +++G Sbjct: 139 QSKRTVIPTVKQPVTYKEALKIASELDSTLVPYENERGMDATREIMGQLKAGQTIGVVVG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ EE + + +SLG RILR++TA +AA+A++ Sbjct: 199 PEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240 >gi|116620083|ref|YP_822239.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Solibacter usitatus Ellin6076] gi|116223245|gb|ABJ81954.1| protein of unknown function DUF558 [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 18/229 (7%) Query: 8 KRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 +R FVD I+ + GD+ +L VLR++ G + + + +L++I+ G+ + Sbjct: 4 RRFFVD---AIRNGAAELRGDEARHLTRVLRVESGQRFEISDNQHA-YLAEIAEAKGERV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 F+V + + +K +R ++MI+K+ E+G+ I PV T+ + Sbjct: 60 VFRVLEAIAPVPMPVRITLCAAIVKFDRFEWMIEKATELGVERILPVEATRTERGLFEAS 119 Query: 126 RVRTYTIS-----AAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLE 179 R R+ + +++Q + +P I P LE LK +H F DE G+ L Sbjct: 120 RKRSERWTRIARESSQQSRRVQIPEILPAVRLEECLKETAEHR---YFLDE--GAAPPLV 174 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + VA+LIGPEGG+ E+ S + P+SLGP +LR++T Sbjct: 175 REIPAERSDTVALLIGPEGGWTEAERGLAVSAGWC-PVSLGPLVLRAET 222 >gi|168008547|ref|XP_001756968.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691839|gb|EDQ78199.1| predicted protein [Physcomitrella patens subsp. patens] Length = 353 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 7/220 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD- 81 + GD++ ++ VLR+ D I LF+G G + V K+ V +R + Sbjct: 122 RVDGDEFWHMTRVLRLNVNDRIELFDGNGGLVEGTLLKVTKNCAEVVATTARRVLPLTGP 181 Query: 82 ---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQ 137 V F +K R D++++K E+G + P++T R DR +++A +Q Sbjct: 182 NWHVAAAFGNLKGGRADWLVEKCTELGAQTLTPLLTQRSASVAEQRNDRWNRISMAATKQ 241 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L + PT L+ LL + F + L + +LIGPE Sbjct: 242 CQRLHALDVREPTQLKHLLAE-VKKADVAFLAAAGAPPLAQSLLQRPECLRGGLLLIGPE 300 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G + EE E L P+ LG LR +TAA+A + V Sbjct: 301 GDFTPEEIELLID-AGAMPVGLGQLRLRVETAAIAILTTV 339 >gi|323143545|ref|ZP_08078222.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066] gi|322416608|gb|EFY07265.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066] Length = 226 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 21/224 (9%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI- 89 +L VLR KEGD +F+G E+ +K+ G ++ ++ + + +S +Q + Sbjct: 12 HLCRVLRFKEGDLFNIFDGIGHEFKAKLVRSGNKAAAQI-LETVANSSESPLQIELGQVI 70 Query: 90 -KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 + +++D +QK+VE+G+ I P+ + + + +D + +SA EQ Sbjct: 71 SRGDKMDLTVQKAVELGIFEITPLTSIRCNVKLDEKRSFKKVDSWQKIAVSACEQSGRSF 130 Query: 143 LPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P + T L K W D + D S L+ L A + +LIGPEGG Sbjct: 131 VPKVNEITDL----KTWCSKDREALNLTLDPL--SSLRLKNLKPTA--AKIRLLIGPEGG 182 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +E F+ +SLGPRILR++TAA+ A++++ + GD Sbjct: 183 LSQDEINDAAENGFIG-VSLGPRILRTETAALVALSILGSHFGD 225 >gi|300770808|ref|ZP_07080686.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762365|gb|EFK59183.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 237 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 7/203 (3%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 VLR+ D I L +G+ G + ++I ++ ++ +E Q Q + +P K Sbjct: 29 VLRLANRDQIHLIDGRGGFYRAEIIDAHPKRTTLQIIEIQEAFQKPSYHLHMAVAPTKNI 88 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 R ++ ++K+ E+G+ I PVI+ +++ DR+ ++A +Q +P + P T Sbjct: 89 ERFEWFLEKATEVGVQEITPVISEHSERKEVKPDRLNKVIVAAMKQSYKAYMPKLNPAMT 148 Query: 152 LEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS 210 L LK + + Q A + L ++ + ILIGPEG + +EE S Sbjct: 149 LTNFLKQQEQVSAQKAIAHCVDSEKQYLSQVFTPQQ--DYVILIGPEGDFSTEEIGKTIS 206 Query: 211 LPFVTPLSLGPRILRSDTAAVAA 233 FV P+SLG LR++TAA+ + Sbjct: 207 SGFV-PISLGEARLRTETAALTS 228 >gi|326520946|dbj|BAJ92836.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 347 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 23/223 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-----QTKQS 80 GD++ ++ VLR+ D + LF+G G I V K+ VE + Q Q Sbjct: 115 GDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKN-GSDVELLENARLIAPQGIQW 173 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCD 139 V F +K R D++I+K E+G ++ P++T N +DR++ ++A +QC Sbjct: 174 HVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQ 233 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-------I 192 + + PP + H+ + + S E ++ +P + Sbjct: 234 RVHDMSLKPPIQI--------HDLPLAVSQSKLAFLASAEAPPVLSVLPKCGSEEESGLL 285 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +IGPEG + EE + L + V P+ LGP LR +TA ++ ++ Sbjct: 286 IIGPEGDFTEEEVKVLKAAGAV-PVGLGPCRLRVETATISLLS 327 >gi|242038259|ref|XP_002466524.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor] gi|241920378|gb|EER93522.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor] Length = 287 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 20/221 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDG---EWLSKISYVGKSIRFKVEYQ-SRSQTKQSD 81 GD++ ++ VLR+ D + LF+G G ++ K+ G + + + Q Q Sbjct: 65 GDEFWHMTRVLRLGINDRVELFDGAGGLAEGFIHKVDKGGSDVELLEDARIVAPQGIQWH 124 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDI 140 V F +K R D++I+K E+G ++ P++T N +DR++ ++A +QC Sbjct: 125 VFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQR 184 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA------ILI 194 + + PP + LL V + S E ++ +P + +++ Sbjct: 185 IHEMSLKPPIQISHLLP--------VVSQSKLAFLASAEAPPLLSVLPKSSTEQSGLLIV 236 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEG + EE +L + P+ LGP LR +TA ++ ++ Sbjct: 237 GPEGDFTEEEVHSLKAA-GAAPVGLGPCRLRVETATISLLS 276 >gi|187735952|ref|YP_001878064.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC BAA-835] gi|187426004|gb|ACD05283.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC BAA-835] Length = 245 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 11/223 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQ 83 GD+ H+ A VLR+K+GD+ ++F+G + ++ +S + + + + Sbjct: 20 GDEAHHAAKVLRLKQGDSCIVFDGCGRAAHAVVAEPPRSSGVLLVPGEECPPSPPVAHLT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 + K +D +IQKSVE+G+ AI P++T T + + + + A +Q Sbjct: 80 LCQAVPKGANMDLIIQKSVELGVSAIVPLVTDRTIVRLNAREAEAKRQKWQRIALEACKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAILIG 195 C TLP + P L+ + A G E L + + ++L+G Sbjct: 140 CGQNTLPEVALPVPFAEWLRGGIPEGLNIIASLAPGVRPVREVLETARSRSVRHASLLVG 199 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 PEG + E FV P++LGP +LR +TAA +A ++ Sbjct: 200 PEGDFTDRETAMALEAGFV-PVTLGPIVLRVETAAFFGLAAMR 241 >gi|167747076|ref|ZP_02419203.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662] gi|317471891|ref|ZP_07931226.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|167654036|gb|EDR98165.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662] gi|316900664|gb|EFV22643.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 245 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 12/222 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVE--YQSRSQTKQSDV 82 GD +++ +VLRMK G+ +LL + E+ S+ +S G I+ ++ + + S+ K V Sbjct: 20 GDDVNHIRNVLRMKAGERVLLCSESGMEYESELVSLEGDKIQARILDIHGAESELKTRIV 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 + P K +++D +IQK++E+G I PV + + +R +SAA+ Sbjct: 80 LFQGLP-KGDKMDLVIQKAIELGASEIVPVKMKRCVVKLDEKKARKKTERWNAVALSAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVAILIG 195 Q +P + + + ++ E G E S + + + +V I IG Sbjct: 139 QSKRGMIPRVSRVYSFHEAAEMARGLSMVLVPYEAAEGMEYSRQLVKEVKGRESVGIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ E E L LSLG RILR++TA +A ++++ Sbjct: 199 PEGGFEPAEIEELRE-SGGQILSLGKRILRTETAGMAMLSVL 239 >gi|118581365|ref|YP_902615.1| 16S ribosomal RNA methyltransferase RsmE [Pelobacter propionicus DSM 2379] gi|118504075|gb|ABL00558.1| protein of unknown function DUF558 [Pelobacter propionicus DSM 2379] Length = 248 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDV 82 GD + ++ VLR+ G ++ L + + E I V K +R + ++ Sbjct: 22 GDLFSHMVRVLRLGPGASVTLVDEQGAEHRGSIQQVEKERVMVRIAGSVVPGNGEGETPA 81 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIR-----PVITRYTQNTHYN-MDRVRTYTISAA 135 I + K + D ++QK E+G+ R + R + H ++R T AA Sbjct: 82 ITICQALPKGEKTDLILQKGTELGVHDFRLFAGCRSVARVREEQHKGKLERWNRITAEAA 141 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSLEKLHAIAHIPNVAIL 193 QC +P + E + DH +++ + G +N+LE+L A + + Sbjct: 142 RQCGRRRIPAVSWFPDAERAAGSCDHELRLLLWEGERRQGLKNALEQLPRPA---SAIVA 198 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ E F+ P+SLG R+LR++TA++A A++Q I G+ Sbjct: 199 IGPEGGFDPREVRCFIGHGFL-PVSLGKRVLRTETASLAITAILQYIWGN 247 >gi|297584653|ref|YP_003700433.1| hypothetical protein Bsel_2365 [Bacillus selenitireducens MLS10] gi|297143110|gb|ADH99867.1| protein of unknown function DUF558 [Bacillus selenitireducens MLS10] Length = 250 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 19/228 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSD 81 +GD H+++ V+RM +GD I+ + +G G + + G R E ++ +T + Sbjct: 19 TGDDAHHISKVMRMTDGDRIICCMPDGSCGTATIQSTAEG---RVHAELETWLKETSEMP 75 Query: 82 VQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPV-ITRY-----TQNTHYNMDRVRTYTIS 133 V+ + K ++L+ +IQK+ E+G+ ++ PV ++R + + R R Sbjct: 76 VEVTLAQGLPKGDKLELIIQKATELGVSSVIPVQMSRSIAKIDEKKAGKKVVRWRKIAKE 135 Query: 134 AAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN 189 AAEQ +P I P T ++ L++ +D + G+ ++L L + + Sbjct: 136 AAEQAHRNRVPCISEPVSFTRVQGLVEEYDLVIAAYEEEGKAGNHHALPVLLNGLLPGQR 195 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + ++IGPEGG+ EE E L V +S+GPRILR++TA + +A V Sbjct: 196 ILVIIGPEGGFSPEEIEKLER-AGVRSVSIGPRILRTETAPLYVLAAV 242 >gi|332704197|ref|ZP_08424285.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio africanus str. Walvis Bay] gi|332554346|gb|EGJ51390.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio africanus str. Walvis Bay] Length = 248 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 6/216 (2%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTKQSDVQ 83 SG+ H L VLR G + LF+G+ + L + IS K ++E + + Q+++ Sbjct: 22 SGETQH-LIKVLRTPLGATVRLFDGQGRDGLFRLISADRKGALLELESVTVHERHQTELV 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDIL 141 K R D++++K+VE+ + + +Q D + ++AA+QC Sbjct: 81 VALGWNKAGRRDWLLEKAVELEVAGLWFWQAGRSQGHVPEQPKDSWQPKLVAAAKQCANP 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 LP + + L+FL+ + E G E ++ + + NV +++GPEGG Sbjct: 141 WLPELATLSDLKFLVDASKRYPRRFLLWEAPG-EKLIDPVLDLGGQGNVLMVLGPEGGLE 199 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E ETL S F+T SLG RILR +TAA+ M L Sbjct: 200 KAEAETLISAGFMT-RSLGSRILRWETAALLGMGLA 234 >gi|77919149|ref|YP_356964.1| hypothetical protein Pcar_1549 [Pelobacter carbinolicus DSM 2380] gi|77545232|gb|ABA88794.1| conserved hypothetical protein TIGR00046 [Pelobacter carbinolicus DSM 2380] Length = 259 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 14/162 (8%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTL 143 + R + ++QKSVE+G+ I P + ++ R + AA+QC + Sbjct: 100 EKERFELILQKSVELGVQRIVPFVCSHSTTLAERDAGQRKSHRWPEVVLRAAKQCRRGDI 159 Query: 144 PFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P + P + + +L+ WD N + D ++ L I + +I+IGPEGG+ Sbjct: 160 PELGPVMSFDQVLEEVSMWDLNLMLYEGD----AQARLHDAFTSKDISSASIIIGPEGGF 215 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 E + +T +SLGPRILR++TAA+A ALVQ + G Sbjct: 216 ARHEAQQASDAGILT-VSLGPRILRTETAAIAGAALVQFMLG 256 >gi|16329261|ref|NP_439989.1| hypothetical protein slr0722 [Synechocystis sp. PCC 6803] gi|6226389|sp|P72667|RSME_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|1651741|dbj|BAA16669.1| slr0722 [Synechocystis sp. PCC 6803] Length = 303 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 4/235 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL V I+ + Q HYL VLR+++GD ++ +G G W ++++ + Sbjct: 67 RLVVAPEQIIEATVTLTTAQLHYLQRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQL 126 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 +E S V + K + + +I+ E+G A +P++T T + + ++R Sbjct: 127 LETVSEQNELPLPVTLAIALPKGSGFEEIIRPCTELGATAFQPLLTERTLLKPSQNKLER 186 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + AAEQ + LP + P T ++ + T + L ++ Sbjct: 187 WQRIVTEAAEQSERQWLPPVAAPLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSN 246 Query: 187 IP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +P + + GPEGG+ E + F P+SLG RILR+ TA A+A + A+ Sbjct: 247 LPAQIVLATGPEGGWTDNEISLAIAKGF-QPVSLGKRILRAVTAPTVALAQINAL 300 >gi|297180287|gb|ADI16506.1| uncharacterized protein conserved in bacteria [uncultured bacterium HF4000_05M23] Length = 274 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 28/244 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDV 82 G L VLR+ GD I LF+G EW +I V + ++R +S + + V Sbjct: 30 GQLARQLKTVLRVGIGDRIGLFDGSGLEWEVQIDQVDRTEVAVRLISTVESVPEPF-ARV 88 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTYTISAAE 136 + + R++ IQK E+G PV++ Q + +DR R I AAE Sbjct: 89 TMLLGLARPERIELAIQKCTELGAVRFIPVLSERVQGGVTGAPSGSRLDRWRRIAIEAAE 148 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQI-VFADETCGSENSL-EKLHAIAHIP------ 188 QC +P + P + + + Q+ +E G + L E L +I Sbjct: 149 QCGRAVVPPVDEPLPVMDAVNSQLAARQLFCMWEERTGDSSPLGEALKSIETQALEKNDG 208 Query: 189 ---------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +A+LIGP GG E + + ++LGPR+LRS+TAA+ M+ + Sbjct: 209 QRETGTGGCEMAVLIGPPGGVSHAEASAIQEA-GASLVTLGPRVLRSETAAIVVMSAILY 267 Query: 240 ICGD 243 GD Sbjct: 268 EMGD 271 >gi|218288633|ref|ZP_03492910.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius LAA1] gi|218241290|gb|EED08465.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius LAA1] Length = 250 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 13/248 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L RLF+D + + G+ H+ + VLR + G+ +L+ + +G + ++I+ V + Sbjct: 2 LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIADV-RPGE 59 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMG------MGAIRPVIT-RYT 117 V + R+ + + ++ K ++D ++QK E+G A R V+ Sbjct: 60 ICVHLRERAPSNEPKRSFVLVQGLAKGEKMDTILQKCTEIGAWGFVVFEAERSVVRLSGA 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNC-QIVFADETCGSE 175 + R R AA Q +PF+ + P+ L +H ++ DE + Sbjct: 120 AKVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLAALTEHGVDHVLVLDEEERAN 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + A A+++GPEGG E+ ++LGPRILR++TA A+A Sbjct: 180 GILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALA 239 Query: 236 LVQAICGD 243 + A GD Sbjct: 240 IALAEWGD 247 >gi|153953539|ref|YP_001394304.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium kluyveri DSM 555] gi|219854161|ref|YP_002471283.1| hypothetical protein CKR_0818 [Clostridium kluyveri NBRC 12016] gi|146346420|gb|EDK32956.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567885|dbj|BAH05869.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 251 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 GD ++ VLR+K GD + + N E+L I + + + + + + + Sbjct: 19 KGDDLKHIHKVLRLKIGDKVNINNCHGKEFLGVIDSIEREKVTVNIVEELKLYNESPLKV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQ 137 Y+F + K++++D ++QK+ E+G+ I P+IT +DR + A +Q Sbjct: 79 YLFQGLPKSSKMDLVVQKATELGIWEITPIITNRVAIKGDFKEFKRVDRWNKIALEACKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLHAIAHIPNVAILI 194 C +P + PP E LLK + IV +++ G + ++ + I ++AI+I Sbjct: 139 CKRSIIPAVKPPIYFEELLKYLSNMDLIVVPYEMEKSIGIKKVIDSIEYRDSIGDIAIVI 198 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG+ EE E L ++ ++LGPRILR++TA AL+ GD Sbjct: 199 GPEGGFEEEEIEELKNIS-SKIVTLGPRILRTETAGFVCTALLMYELGD 246 >gi|242242852|ref|ZP_04797297.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis W23144] gi|242233694|gb|EES36006.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis W23144] Length = 253 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 20/226 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTK-QSDVQY 84 + YH++ +V+R KEG NI++ + + K IS +SI K+E + + T+ ++ Sbjct: 25 EDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQSIEIKLEEKQQINTELPQNITI 84 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 IK ++ ++MIQK+ EMG R V+ + R + AAEQ Sbjct: 85 CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNVSKVEKKLSRWQKIIKEAAEQS 144 Query: 139 DILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VA 191 LT+P I + L+ ++ +D+ ++ A E L + I V Sbjct: 145 YRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYEEQAKHGELSQFKQTIKQFKTQDRVL 201 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E + T + LGPRILR++TA + A++ V Sbjct: 202 IIFGPEGGLSDSEIALFGDVS--TLVGLGPRILRAETAPLYALSAV 245 >gi|282859154|ref|ZP_06268280.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010] gi|282588072|gb|EFB93251.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010] Length = 262 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 112/233 (48%), Gaps = 14/233 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQ 76 K Q + ++ + VLRMKEGD + L +G + +++ K + + E +++ Sbjct: 13 KAQTELPTEEALHAVRVLRMKEGDELFLMDGVGCFYRAEVVLTSAKRCAYAIKETLPQTK 72 Query: 77 TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135 T + + +P K R+++M++K+ E+G+ I + R+++ +DR+ ISA Sbjct: 73 TWEGRIHLAIAPTKDMGRIEWMVEKATELGIDEITFLDCRFSERKQIRIDRIEKIVISAM 132 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKLHAIAHIP---- 188 +Q P + + + ++ + N + A C N ++K + I Sbjct: 133 KQSRKGWKPIVNEMVSFKEFIQTMETNASQQEYSLASFICHCYNEIDKNDFFSVITEQEN 192 Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +V IL+GPEG + +E + + F + ++LG LR++TA + A+A+ Q Sbjct: 193 LKDDVLILVGPEGDFSIDEVQLALAAGFQS-VTLGESRLRTETAGLNAIAMTQ 244 >gi|46447268|ref|YP_008633.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila UWE25] gi|46400909|emb|CAF24358.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila UWE25] Length = 240 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 117/242 (48%), Gaps = 24/242 (9%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----GK 63 +R F + + +++H+LAHV+R K+G+ + L NGK L++ + + G+ Sbjct: 4 ERFFTSEEISLHQHVLLKDNEFHHLAHVMRAKKGERVELVNGKS--ILAQATVLDIHKGQ 61 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-- 121 ++ +++ + S + + +K +RL ++++K E+G+ + + Sbjct: 62 AVLL-IDHIKTERMDSSRLILAQAYVKPDRLAFILEKGTELGVDEFWLFPGQLSSQKEIY 120 Query: 122 -YNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + +R ++ I+A +QC LTLP ++ P L WD +F+ G + Sbjct: 121 PHQQERAQSLIIAAMKQCGRLTLPKILFKPA-----LNQWDS----IFSQAFFGDLDPHA 171 Query: 180 KLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A A+ + + GPE G+ E++ L + V + L ILR+DTA++AA+++ Sbjct: 172 PFLAAANEGSSYPIIFFTGPESGWSDAERQQLKKMG-VQGVRLHTNILRTDTASIAALSI 230 Query: 237 VQ 238 +Q Sbjct: 231 IQ 232 >gi|30022390|ref|NP_834021.1| surface protein [Bacillus cereus ATCC 14579] gi|29897948|gb|AAP11222.1| surface protein [Bacillus cereus ATCC 14579] Length = 245 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 20/240 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-TCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E S + L + + I+ GPEGG EE L FV P SLGP+ ++ AV Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPKNFKNRNGAV 235 >gi|124025432|ref|YP_001014548.1| hypothetical protein NATL1_07251 [Prochlorococcus marinus str. NATL1A] gi|123960500|gb|ABM75283.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. NATL1A] Length = 254 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 18/246 (7%) Query: 8 KRLFVDFPLC---IKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +RLF+ I + G K + ++ HYL V+RM+ D + + +GK W +KI Sbjct: 5 RRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKIVE-K 63 Query: 63 KSIRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 K+I+ + Q +++ + I I + +Q S E+G+ I+P+I++ + Sbjct: 64 KAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKGFENFLQMSCEIGVDIIQPLISKRSVVK 123 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++ + R + A EQ + L P + T + + Q+ FA E+ Sbjct: 124 ECSNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--ATRIEDL 181 Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + + P V ++IGPEGG++ EE+E + FV +S+G ILR+ TAAV+A Sbjct: 182 PDCVTWVKETPHEVNQVWVVIGPEGGWNKEEEELAFNAGFVG-VSMGETILRTSTAAVSA 240 Query: 234 MALVQA 239 + ++ + Sbjct: 241 LQVMTS 246 >gi|291525040|emb|CBK90627.1| RNA methyltransferase, RsmE family [Eubacterium rectale DSM 17629] Length = 246 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 110/222 (49%), Gaps = 9/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ I + + + IS + + ++ + T+ + Sbjct: 19 TGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEVIAAIDSADETGTELDNHI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 ++ + K ++++ +IQK+VE+G+ I PV + + + R + SAA+ Sbjct: 79 VLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEKKAAKKLQRWQAIAESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + P T + LK + + +V + G + + E + + + +++G Sbjct: 139 QSKRTVIPTVKQPVTYKEALKIASELDITLVPYENERGMDATREIMGQLKAGQTIGVVVG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ EE + + +SLG RILR++TA +AA+A++ Sbjct: 199 PEGGFAPEEIALVDENATMHRISLGRRILRTETAGLAALAML 240 >gi|83720201|ref|YP_441739.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia thailandensis E264] gi|257137908|ref|ZP_05586170.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia thailandensis E264] gi|83654026|gb|ABC38089.1| conserved hypothetical protein TIGR00046 [Burkholderia thailandensis E264] Length = 256 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 56/272 (20%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 9 AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQL------ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R + D F P + +++D++I+K+VE+G+ A+ Sbjct: 62 ----VEIDKRGALARIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 114 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 P V+ + + R ++ EQC +P + P + L Sbjct: 115 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPGVAPVRGFDAWLD------ 168 Query: 164 QIVFADETCGSENSLEKLHAIAHIP-----------NVAILIGPEGGYHSEEKETLHSLP 212 D E L L A +P +V +LIGPEGG +E++ + Sbjct: 169 --ALPDAPAAGELRL-LLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARG 225 Query: 213 FVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 F LSLGPR+LR++TA A +A + A G W Sbjct: 226 FAA-LSLGPRVLRTETAGAAVLAALAARWGGW 256 >gi|121611717|ref|YP_999524.1| 16S ribosomal RNA methyltransferase RsmE [Verminephrobacter eiseniae EF01-2] gi|121556357|gb|ABM60506.1| protein of unknown function DUF558 [Verminephrobacter eiseniae EF01-2] Length = 273 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 34 HVLRMKEGDNILLF-NGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKT 91 VLR++ GD I LF G+ GE+ + + +G+S +R ++ R + + ++ + I Sbjct: 30 QVLRLQPGDGITLFHGGQGGEFDATVLRMGRSDVRVQLGAHHRIEREAPRAVHLLAGIMA 89 Query: 92 N-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144 N R+D++++K+ E+G +I P++T + + + + ++A EQC +P Sbjct: 90 NERMDWLVEKATELGAASITPLLTERSVLKLRGERADKKIAHWQAVAVAACEQCGRNRVP 149 Query: 145 FIYPPTTLEFLLKNWDHNC------QIVFADETCGSENSLEKLHAIAHIPNVA------- 191 ++P T L ++ C +++ A + P Sbjct: 150 PVHPATALAHWVRAQAAACVQQTALRLLLAPGPGAAPLHSAAAADRGLRPAADRDERPLY 209 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 IL G EGG S E++ F TP++LGPR+LR++ Sbjct: 210 ILSGAEGGLSSAEQDLARQHGF-TPVTLGPRVLRAE 244 >gi|116490649|ref|YP_810193.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1] gi|290890063|ref|ZP_06553146.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429] gi|116091374|gb|ABJ56528.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1] gi|290480254|gb|EFD88895.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429] Length = 253 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 20/226 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 K K + D +H+L VLR+K+ D + L G+ +L +++ + F S+ Sbjct: 18 KISKKNNPDVFHHLKDVLRVKDKDLVELVAGQSA-YLVRVNEISAMEVFFNRLDKLSKDP 76 Query: 79 QSDVQ-YIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130 + V+ I P +K++ LD++IQK+ E+G+ I ++T ++ + + R Sbjct: 77 EIPVKTTIVVPLLKSDHLDWLIQKATELGVFKI--ILTNFSYSVVKDIKIEKKLQRYEKI 134 Query: 131 TISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADET--CGSENSLEKLHAIAHI 187 AAEQ L +P IY +E + DH IV +E+ G +++L K+ +A + Sbjct: 135 VKGAAEQSHRLLVPEIIYEKKFIEQAGLS-DHQIGIVAWEESAKAGEKSNLFKMIRLAKL 193 Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + + GPEGG +E + L S F+T LGPRILR++TA Sbjct: 194 DSKFNEIVAVFGPEGGISKKEIKKLESSGFITA-GLGPRILRAETA 238 >gi|259909605|ref|YP_002649961.1| hypothetical protein EpC_29800 [Erwinia pyrifoliae Ep1/96] gi|224965227|emb|CAX56759.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] gi|310766488|gb|ADP11438.1| conserved uncharacterized protein [Erwinia sp. Ejp617] Length = 243 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 22/250 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ PL S + H++ VLRM G + LF+G + ++I K + Sbjct: 2 RIPRIYQPEPLQTGNDIALSEEAAHHVGRVLRMGTGQMLELFDGTGLVFAAEIIQADKKN 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + K+ SR +++S + + + ++++ IQK+VE+G+ I P+ +++ Sbjct: 62 VCVKINA-SREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGV 117 Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D R I+A EQC +P + L+ + ++ Sbjct: 118 KLDAERLAKKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAWCAEPEPGLKLNLHPRAKH 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S N+L + V +LIGPEGG ++E T+ + T + LGPR+LR++T A+ A Sbjct: 178 SINTLP-----LPVERVRLLIGPEGGLSADEI-TMTAQHGFTDILLGPRVLRTETTALTA 231 Query: 234 MALVQAICGD 243 + +Q GD Sbjct: 232 ITALQVRFGD 241 >gi|291543373|emb|CBL16482.1| RNA methyltransferase, RsmE family [Ruminococcus sp. 18P13] Length = 239 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 15/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F P Q +G+ H++ LRM+ G+ + + G ++ +I + G + Sbjct: 1 MPRFF--LPALDPVQPVITGEDAHHIGFSLRMRPGEQLTVCAGGV-DYDCRIREITGDCV 57 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 +V+ Q+ + + ++ + KT++L+ ++QK+VE+G I PV+TR + Sbjct: 58 YLEVQGQAPCAAEPTVALTLYQALPKTDKLEQIVQKAVELGAARIVPVLTRRCISRPDPG 117 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ +AA+Q +P + T L+ V E G S+ Sbjct: 118 QFSKKQQRLQKIAHAAAKQAGRGIIPEVGGMLTFSQALEELGGQQLPVMLYEAGGV--SM 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +L + ++ +L+G EGG+ EE L + P+ LGPRILR +TA + A++L+ Sbjct: 176 SQL-TVPRTGSIGVLVGSEGGFDPEEAAQAR-LAGIQPVWLGPRILRCETAPLTALSLLM 233 Query: 239 AICGD 243 + G+ Sbjct: 234 YLSGN 238 >gi|206561729|ref|YP_002232494.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia J2315] gi|198037771|emb|CAR53715.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 246 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 113/265 (42%), Gaps = 46/265 (17%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD L D ++ VLR++ GD + LF+G G++ +++ Sbjct: 1 MPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL-------- 51 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAIRP 111 VE RS Q D F P + +++D++I+K+VE+G+ A+ P Sbjct: 52 --VEVDKRSALVQVDS---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVP 106 Query: 112 ------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI 165 V+ + + R ++ EQC +P + P + F W Sbjct: 107 LSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAP--VIGF--SAWLDALPA 162 Query: 166 VFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPLSL 219 AD S A +P+ V +LIGPEGG +E+ + F T LSL Sbjct: 163 APADGELRLLLSPRASIPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGF-TALSL 221 Query: 220 GPRILRSDTAAVAAMALVQAICGDW 244 GPR+LR++TA A +A + A G W Sbjct: 222 GPRVLRTETAGAAVLAALAARWGGW 246 >gi|87306779|ref|ZP_01088926.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM 3645] gi|87290958|gb|EAQ82845.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM 3645] Length = 240 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 17/228 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIR 66 R F++ P+ T + G + H+L HV+R K G + LF+ ++ ++I VG+ + Sbjct: 4 RFFLEAPITGDTV-EIDGPEAHHLLHVMRAKIGAQVTLFDDSGAQFAAEIIAVGRKSATA 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNM 124 V Q S+ + + K +R ++++K VE+G+ + P+ T + + ++ Sbjct: 63 RVVARQEVSRELPISLTIAAALPKGDRQRWLVEKCVELGVTDLTPLDTERSVSLKKEKSL 122 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSENSLEK 180 D++R Y I A++QC+ L I L W+H +++ + C S L Sbjct: 123 DKLRGYVIDASKQCERNRLMRIADSAALPAF---WNHASLSAVRLIADPDACESVADLLP 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A +V + IGPEGG+ +E + S + LG RILR +T Sbjct: 180 ----AEPTDVIVAIGPEGGFSPDEYQAALSAGW-RGFRLGKRILRIET 222 >gi|291541829|emb|CBL14939.1| RNA methyltransferase, RsmE family [Ruminococcus bromii L2-63] Length = 242 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 17/223 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G+ +++ VLRM+ GD+I L + ++ KIS + + +V SQ + + Sbjct: 19 GENAKHISKVLRMRTGDDITLVSPNKTQYECKISLITQG---EVTVDIISQKPCENEPDV 75 Query: 86 FSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 F + K +++D+++QK E+G+ I P+I+ ++ +R + + A Sbjct: 76 FVTLYQALPKGDKMDFIVQKCTELGISRIVPMISARCVSRPDEKSLKKKCERWQKIALQA 135 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 A Q +P + P + + + N + VF E G S+ K+ V + I Sbjct: 136 AMQSRRGIIPEVTPCISFKEATEQTKQNEKTVFFYEMGG--ESVRKILNGTKPKTVGMFI 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G EGG+ E +++ ++ +LG RILR++TA +AA++++ Sbjct: 194 GSEGGFEQSEVDSVTAIGG-QAATLGKRILRAETAPLAALSII 235 >gi|159901854|gb|ABX10589.1| hypothetical protein 5H12_27 [uncultured planctomycete 5H12] Length = 239 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 18/214 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 SG+ H++ +V+RMK GD+++LF+G + E+ I+ K +I+ +E SR Q Sbjct: 18 SGESAHHIVNVMRMKTGDSVILFDGTNREFTGIITETDKKVVTIAIQSVIEV-SREQKIT 76 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTH-YNMDRVRTYTISAAEQ 137 S + F K +R +MI+K VE+G+ ++ P+ T R N ++++++ + + A++Q Sbjct: 77 STLAVAFP--KGDRQKFMIEKLVELGVDSLVPLQTQRSVVNVQPRSLEKIQRWIVEASKQ 134 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILI 194 C L I P T+ F +W H + + L AI V++ + Sbjct: 135 CGRNQLMQIKP--TVSF--NDWIHGQREGPRFVAHPHDMRLTITDAIGQAQRAGVVSLTV 190 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 GPEGG+ S+E + + T ++LG ILR +T Sbjct: 191 GPEGGFTSQEIADAQNAGWST-IALGITILRIET 223 >gi|218132834|ref|ZP_03461638.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC 43243] gi|217991707|gb|EEC57711.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC 43243] Length = 245 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 14/223 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQ 83 G ++L +VLR+K G+ I+L +G + ++ IS + I E +R + S + Sbjct: 20 GADVNHLKNVLRIKCGEKIILSSGDNVDYYCTISEINDDSVIASIDETDTRGRELPSRI- 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K ++++ +IQK+VE+G I PV + + + + R + SAA+ Sbjct: 79 YLFQGLPKGDKMELIIQKAVELGAYGIIPVAMKRSVMKLDSKKAESKVKRWNAISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHIPNVAILI 194 Q +P ++ T + +V C G + + +KL +I ++ I I Sbjct: 139 QSKRSIIPAVHDVMTFA-QAAEYAKTLDMVLLPYECADGMQATKDKLSSIKPGSSIGIFI 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ E H F ++LG RILR++TA + ++++ Sbjct: 198 GPEGGFDGSELTIAHDAGF-DVITLGRRILRTETAGMMLLSVL 239 >gi|241767207|ref|ZP_04764956.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN] gi|241362156|gb|EER58240.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN] Length = 245 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 24/210 (11%) Query: 34 HVLRMKEGDNILLFNGKD------GEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 VLR++ GD I LF+G GE+ + + +G+S +R +V + + ++ Sbjct: 27 QVLRLQPGDGITLFHGGQDEGSPGGEFDATVLRMGRSDVRVQVGTHHAIEREAPRAVHLL 86 Query: 87 SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 + I N R+D++++K+ E+G+ +I P++ + + + + ++A EQC Sbjct: 87 AGITANERMDWLVEKATELGVASITPLLAERSVLKLKGERAEKKLAHWQAVAVAACEQCG 146 Query: 140 ILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +P ++ L L+ +++ + LHA A V L G Sbjct: 147 RNRVPVVHEAVDLAGWLRAHAPMPAQGMRLLLSLRA-----GTGPLHATAGTGAVVFLSG 201 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 PEGG + E++ + F P++LGPR+LR Sbjct: 202 PEGGLSAAEEDLALAQGF-APVTLGPRVLR 230 >gi|221213199|ref|ZP_03586174.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD1] gi|221166651|gb|EED99122.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD1] Length = 255 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEIDKRSALAQIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + L + Sbjct: 114 VPLSTARGVVKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDSLPPAP 173 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 174 ADGELRLLLSPRASIPFASLPDAPPAAP---VTLLIGPEGGLSPDEEAAARARGF-TALS 229 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255 >gi|257462827|ref|ZP_05627233.1| putative cytoplasmic protein [Fusobacterium sp. D12] gi|317060456|ref|ZP_07924941.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313686132|gb|EFS22967.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 237 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 19/217 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----D 81 + H+L HV R++ GD + +G D E++ +I K I KV Q + + + + Sbjct: 21 EDLHHLLHVFRLEVGDKVRAVDG-DYEYICEIQ---KIIENKVHLQILEKKEDAFSLSVE 76 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDI 140 + IK +++D+ IQK E+G+ +I P I R ++ T +QC Sbjct: 77 IDAAICLIKNDKMDFCIQKLTELGIHSILPTIAKRCVVKLKEKKEKWNTIVKETMKQCQG 136 Query: 141 LTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL---HAIAHIPNVAILIGP 196 + I L+ L L+N+D ++ C E+SL+ + + + +IGP Sbjct: 137 VKPTQIQEIIDLKQLPLENYD----LILLPYECEEEHSLKHVLRNGLLGATKKILYIIGP 192 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 EGG+ EE E L S +SLG RILR++TAA+ Sbjct: 193 EGGFEKEEIEHLAS-KGAKVVSLGKRILRAETAAIVV 228 >gi|228473117|ref|ZP_04057874.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC 33624] gi|228275699|gb|EEK14476.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC 33624] Length = 243 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 8/220 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85 ++ +++ VLR K GD + + +G+ + ++I Y+ K + S + T + Sbjct: 21 EESNHIHKVLRKKTGDLLFITDGRGYLYEAQIQYITDKKCTAHILSHSLAPTPAYHLHIA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ + P++ +++ +R +SA +Q P Sbjct: 81 VAPTKMNERYEWFLEKATEIGVHEVTPILCDHSERKTIKTERFEKILLSAMKQSLQCYKP 140 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPEGGY 200 + PP +L L + N + C + L + +P N+ +LIGPEG + Sbjct: 141 QLNPPISLLEWLDTIESNSVGKYVAH-CQEGARVLLLDRLEELPQETTNLWVLIGPEGDF 199 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E + S F+ P+SL P LR++TAA+ A + + I Sbjct: 200 SQREIQKACSKGFL-PISLSPNRLRTETAAIVACSCISDI 238 >gi|256426185|ref|YP_003126838.1| hypothetical protein Cpin_7237 [Chitinophaga pinensis DSM 2588] gi|256041093|gb|ACU64637.1| protein of unknown function DUF558 [Chitinophaga pinensis DSM 2588] Length = 234 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 8/213 (3%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 Y VLR ++G+ +LL +G+ G + + I+ K I +Y+ S V+ S Sbjct: 23 YCIMVLRHEKGNEVLLTDGRGGRYTTTITDDNRKKCIVTVNQYELMPPVA-SPVRIAISF 81 Query: 89 IK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 K ++R+++ ++K+ E+GM I P++++ T+ + DR +SA Q LP + Sbjct: 82 TKNSSRIEWFLEKAAEIGMQMIIPLVSQRTEKEKFRADRFENILVSAMLQSQQYYLPELT 141 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 P + + L++ Q+ A C E A+ + +LIGPEG + EE Sbjct: 142 APASFDTLVQQPPAQ-QLFIAH--CLPEQKTHLWQAMQPGKDSLLLIGPEGDFTPEEIHL 198 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + F P+SLG LR++TA V ++ A+ Sbjct: 199 ALNKGF-QPVSLGDNRLRTETAGVVGCTMMNAV 230 >gi|291279753|ref|YP_003496588.1| hypothetical protein DEFDS_1371 [Deferribacter desulfuricans SSM1] gi|290754455|dbj|BAI80832.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 236 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 124/231 (53%), Gaps = 28/231 (12%) Query: 26 GDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 GD+ Y+Y+ +VLR+K G+ I+++ K + + KI + K ++E ++ K+ + ++ Sbjct: 21 GDKGYNYVRNVLRLKVGEQIVVYT-KKSKGMYKIKNINKK-SIEIERENEILYKKPEYEF 78 Query: 85 IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQ 137 + S +K LD++I+K E+G A + +I + T N+ + ++R++ I+ A Q Sbjct: 79 VVIQSAMKREYLDFVIEKYGELG--ATKVIIVK-TDNSVVKIENKTLERLKKLMINGAMQ 135 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 D LP I ++ KN + N + D+ C E +K+ +V+I IGPE Sbjct: 136 ADYDYLPEIEYHDSI----KNLNVNTK----DKICFYEKENKKVFLDRISKSVSIFIGPE 187 Query: 198 GGYHSEEKETLHS--LPFVTPLSLGPRILRSDTAAVAAMALVQAI--CGDW 244 GG++ ++ L+ F++P++ IL+++TA V +++++ CG + Sbjct: 188 GGFNDDDISILNEKGFRFLSPIN---GILKAETAGVLFAGMIKSLIDCGRY 235 >gi|221202461|ref|ZP_03575492.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2M] gi|221208082|ref|ZP_03581087.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2] gi|221171985|gb|EEE04427.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2] gi|221177634|gb|EEE10050.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2M] Length = 255 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEIDKRGALAQIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + L Sbjct: 114 VPLSTARGVVKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLAPAP 173 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG EE+ + F T LS Sbjct: 174 VDGELRLLLSPRASIPFASLPDAPPAAP---VTLLIGPEGGLSPEEEAAARARGF-TALS 229 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255 >gi|27468182|ref|NP_764819.1| hypothetical protein SE1264 [Staphylococcus epidermidis ATCC 12228] gi|57867034|ref|YP_188721.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus epidermidis RP62A] gi|251810994|ref|ZP_04825467.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis BCM-HMP0060] gi|293366462|ref|ZP_06613139.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27315728|gb|AAO04863.1|AE016748_97 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637692|gb|AAW54480.1| conserved hypothetical protein TIGR00046 [Staphylococcus epidermidis RP62A] gi|251805504|gb|EES58161.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis BCM-HMP0060] gi|291319231|gb|EFE59600.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] Length = 253 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 27/251 (10%) Query: 6 HLKRLFV----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISY 60 +L+R F+ D C + K + YH++ +V+R KEG NI++ + + K IS Sbjct: 3 NLQRYFMNQSADENQCFFIENK---EDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISI 59 Query: 61 VGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVI 113 +SI K VE Q + ++ IK ++ ++MIQK+ EMG R V+ Sbjct: 60 NDQSIEIKLVEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVV 119 Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE---FLLKNWDHNCQIVFADE 170 + R + AAEQ LT+P I + L+ ++ +D+ ++ A E Sbjct: 120 KLNDSKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYE 176 Query: 171 TCGSENSLEKL-HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 L + I V I+ GPEGG E + T + LGPRILR+ Sbjct: 177 EQAKHGELSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRA 234 Query: 227 DTAAVAAMALV 237 +TA + A++ V Sbjct: 235 ETAPLYALSAV 245 >gi|219848626|ref|YP_002463059.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aggregans DSM 9485] gi|219542885|gb|ACL24623.1| protein of unknown function DUF558 [Chloroflexus aggregans DSM 9485] Length = 251 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 17/241 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 R FVD P+ ++ D H VLR+ GD +LL +GK + + + + + R Sbjct: 12 RFFVD-PVWLRGDEILIDDPSLLHQWTRVLRLTAGDRVLLLDGKGMAAVVQFTAIDRR-R 69 Query: 67 FKVEYQSRSQTKQSDVQYI---FSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQ 118 + +R I + I+ R ++ +QK+VE+G I PV ++ Sbjct: 70 AQGYVLTRCHAGGELAVVIDLYLALIRPERFEWALQKAVELGARRIIPVAFARSLSGDRI 129 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +TH M R T AAEQ LP + P + + DE +E+ L Sbjct: 130 DTHRLMRWQRIAT-EAAEQSGRGRLPEVSAPQPFSAAVVAGGRADLALMLDEQ--AEHHL 186 Query: 179 EKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + +AI+ GPEGG E+ FV +SLGPRILR++TA +AA+A++ Sbjct: 187 RDIVTSPTSLRQIAIISGPEGGIDPRERRAAIDHGFVA-VSLGPRILRAETAPLAALAML 245 Query: 238 Q 238 Q Sbjct: 246 Q 246 >gi|282875997|ref|ZP_06284864.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis SK135] gi|281295022|gb|EFA87549.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis SK135] Length = 250 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 20/226 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFK-VEYQSRSQTKQSDVQY 84 + YH++ +V+R KEG NI++ + + K IS +SI K VE Q + ++ Sbjct: 22 EDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQSIEIKLVEKQQINTELPQNITI 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 IK ++ ++MIQK+ EMG R V+ + R + AAEQ Sbjct: 82 CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQS 141 Query: 139 DILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VA 191 LT+P I + L+ ++ +D+ ++ A E L + I V Sbjct: 142 YRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYEEQAKHGELSQFKQTIKQFKTQDRVL 198 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E + T + LGPRILR++TA + A++ V Sbjct: 199 IIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYALSAV 242 >gi|329725434|gb|EGG61917.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU144] gi|329735250|gb|EGG71542.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU045] gi|329737441|gb|EGG73695.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU028] Length = 245 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 20/226 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFK-VEYQSRSQTKQSDVQY 84 + YH++ +V+R KEG NI++ + + K IS +SI K VE Q + ++ Sbjct: 17 EDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQSIEIKLVEKQQINTELPQNITI 76 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 IK ++ ++MIQK+ EMG R V+ + R + AAEQ Sbjct: 77 CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQS 136 Query: 139 DILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VA 191 LT+P I + L+ ++ +D+ ++ A E L + I V Sbjct: 137 YRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYEEQAKHGELSQFKQTIKQFKTQDRVL 193 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E + T + LGPRILR++TA + A++ V Sbjct: 194 IIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYALSAV 237 >gi|239818235|ref|YP_002947145.1| 16S ribosomal RNA methyltransferase RsmE [Variovorax paradoxus S110] gi|239804812|gb|ACS21879.1| protein of unknown function DUF558 [Variovorax paradoxus S110] Length = 244 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 17/204 (8%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI---K 90 VLRM+ GD + LF+G GE+ + + +G+S V + + ++ V+ + + Sbjct: 27 QVLRMQPGDALTLFDGSGGEYAATVERMGRS-DVSVAIGAHAPAEREAVRSVHLAVGMPA 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTY----TISAAEQCDILTLP 144 R+D++++K+ E+G+ +I+P+ T + + + ++ R + I+A EQC +P Sbjct: 86 NERMDWLVEKATELGVASIQPLATAHGVLRLSGERAEKKRAHWEAIAIAACEQCGRNRVP 145 Query: 145 FIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGG 199 I+P W H + +E A A P +V +L GPEGG Sbjct: 146 RIHPVRPFSG-PSAWIGAHAGEAPLRLVLSLAEGMRRLADATASAPADRSVLVLSGPEGG 204 Query: 200 YHSEEKETLHSLPFVTPLSLGPRI 223 S E++ + F P++LGPR+ Sbjct: 205 LSSAEEQKALACGF-APVTLGPRV 227 >gi|94984945|ref|YP_604309.1| hypothetical protein Dgeo_0838 [Deinococcus geothermalis DSM 11300] gi|94555226|gb|ABF45140.1| protein of unknown function DUF558 [Deinococcus geothermalis DSM 11300] Length = 230 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 14/204 (6%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91 HVLR++EGD + +F+G+ E + ++ + +++ E S + V + +K Sbjct: 26 HVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLAVALLKG 85 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 ++L +++ + E+G+ ++ ++TR+ + + R+R A++Q P + Sbjct: 86 DKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAVTPEVLA 145 Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 P L L W+ Q+ A GS L H P V +L GPEGG E L Sbjct: 146 PVPLAEL--TWE--GQLFVAQ--PGSAQRLTD-HLSWDAP-VTVLTGPEGGLSDAEIRAL 197 Query: 209 HSLPFVTPLSLGPRILRSDTAAVA 232 S V ++LGPRILR++TA VA Sbjct: 198 TSRGAVA-VTLGPRILRAETAPVA 220 >gi|257453135|ref|ZP_05618434.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R] gi|257467389|ref|ZP_05631700.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918519|ref|ZP_07914759.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059670|ref|ZP_07924155.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313685346|gb|EFS22181.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313692394|gb|EFS29229.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 236 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 18/216 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----D 81 + H+L HV R++ GD + +G D E++ +I K I KV Q + + + D Sbjct: 21 EDLHHLLHVFRLEIGDKVRAVDG-DYEYICEIQ---KIIENKVHLQILEKREDAFSLSVD 76 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-RTYTISAAEQCDI 140 + IK +++D+ IQK E+G+ +I P + + T +QC Sbjct: 77 IDAAICLIKNDKMDFCIQKLTELGIRSIIPTVAKRCVVKLKEKKEKWNTIVKETMKQCQG 136 Query: 141 LTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPE 197 + I T L+ L L+++D ++ C E+SL+ + + + V +IGPE Sbjct: 137 VKPTQIQEVTDLKKLPLEDYD----LILLPYECEEEHSLKYVLQNRVEKPRKVLYVIGPE 192 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GG+ EE + L S +SLG RILR++TAA+ Sbjct: 193 GGFEKEEIQYLAS-KRAEVVSLGKRILRAETAAIVV 227 >gi|72381940|ref|YP_291295.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. NATL2A] gi|72001790|gb|AAZ57592.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str. NATL2A] Length = 254 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 18/240 (7%) Query: 8 KRLFVDFPLC---IKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +RLF+ I + G K + ++ HYL V+RM+ D + + +GK W +KI Sbjct: 5 RRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKI-VEQ 63 Query: 63 KSIRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 K+I+ + Q +++ + I I + +Q S E+G+ I+P+I++ + Sbjct: 64 KAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKGFENFLQMSCEIGVDIIQPLISKRSVVK 123 Query: 121 HYNMDRVRTYT---ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 N +++ Y A EQ + L P + T + + Q+ FA E+ Sbjct: 124 ECNNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--ATRIEDL 181 Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + + P V ++IGPEGG++ +E+E + FV +S+G ILR+ TAAV+A Sbjct: 182 PDCVTWVKETPHEVNQVWVVIGPEGGWNKDEEELAFNAGFVG-VSMGETILRTSTAAVSA 240 >gi|218282362|ref|ZP_03488644.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989] gi|218216648|gb|EEC90186.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989] Length = 239 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 14/239 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +K++++D L I + Q H++ VLR + I + G +L + K I Sbjct: 1 MKQVYLDAVLSIHDVIELDTKQAHHIFDVLRTTPKEKIRIITKNSGVFLGHVE--NKPIL 58 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + QS + + IK ++ ++M+QK+ E+G+ I P +++ T + Sbjct: 59 IIDSIVDVFEENQS-ITLCCALIKQDKFEWMLQKACELGVTKIVPFVSKNTVVKLDEKKA 117 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R ++A +QC+ TL + P L+ L N+ C +V ++ S+ S Sbjct: 118 EKKQSRWNEILLAATKQCNRNTLVELEPVIPLK-KLSNYKSECNLVAYEKE--SDPSKHM 174 Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 H + P ++ + IGPEGG+ E + L+ + SLG ILR++TAA ++ ++ Sbjct: 175 AHYLKENPKSITVCIGPEGGFEESEIQVLNEFGY-ENCSLGNNILRAETAACYVLSAIE 232 >gi|148242549|ref|YP_001227706.1| hypothetical protein SynRCC307_1450 [Synechococcus sp. RCC307] gi|147850859|emb|CAK28353.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 252 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 8/218 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 + D+ HYL VLR++ G + +G+ G +++ G + + Q Q Q ++ Sbjct: 24 TSDERHYLEKVLRLRPGSPFAIVDGQGGLHQAELRSNGWAQQGACVEQQPPQ--QLELVL 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142 + I+ + + +++ + E+G+ +RP+ + + ++ R ++ A EQC+ L Sbjct: 82 LMGLIRRD-FEVVVRMTCELGLDQLRPLQAQRSVVESKGQRPQRWQSQLQEACEQCERLW 140 Query: 143 LPFIYPPTTLEFLLKNWDHNCQI--VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP ++P ++ L ++ + G E L A + + GPEGG+ Sbjct: 141 LPQLHPVSSAIDGLSQAKSAGELRCIGVTREAGVPLLAEVLEAASPTQRWQLACGPEGGW 200 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E++ + + P+SLGP ILR+ TAA++ +A++Q Sbjct: 201 TDDERQAAAAHGW-QPVSLGPNILRASTAAISGLAVMQ 237 >gi|310826526|ref|YP_003958883.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612] gi|308738260|gb|ADO35920.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612] Length = 245 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 14/221 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV--EYQSRSQTKQSDV 82 G+ + ++ VLR+++ + I + +G+ ++++ + VGK S++ ++ SR +T V Sbjct: 20 GEDFKHITKVLRLRDDEAIEVCDGRGTDYIACVETVGKDSLKGRILESRPSRGETDSLRV 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQ 137 K +++ +IQK VE G +I P + + R + AA+Q Sbjct: 80 TLFQGVPKGQKMESVIQKCVEAGAASIVPFTSERTVVKLGDKEEKKTRRWQRVAYEAAKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPN-VAILI 194 +P + TTL + D+ ++ A E G E S K + + P +A++I Sbjct: 140 SKRGIIPHVAEVTTLSAVADTLDNYDLVLIAYE--GEEESSLKDVISCLEFDPERIAVII 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEGG+ E + + +SLG RILR++TA V +A Sbjct: 198 GPEGGFAPAEVAMIEEAGGYS-VSLGRRILRTETAGVVLLA 237 >gi|149927712|ref|ZP_01915964.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105] gi|149823538|gb|EDM82768.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105] Length = 258 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 110/230 (47%), Gaps = 18/230 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSD 81 S D HY + VLR++EG+ + ++NGK E+ + I Y K I+ + R+ Sbjct: 27 SDDLMHYASRVLRLREGEALRVWNGKGCEYHATIHYASKKLAQIQVGEQLALRNTELNRP 86 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 V + + + +++D++++K E+G+ PV + + + + ++A+ Sbjct: 87 VHVLQALPEGDKMDWVLEKCTELGVAGFHPVQAQRSVVKLEGERANKRQAHWERVVLAAS 146 Query: 136 EQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAIAHIPN-V 190 Q + + + P TL L++ W + + F T +E +L K A+ + Sbjct: 147 LQSERGQMAQVEPVRTLSAALEHVALIWPNAHVLWF---TPQAELALRKWTPQANPGEPL 203 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 I +GPEGG+ EE + L + PL+ R+LR++T AVA A + A+ Sbjct: 204 IICVGPEGGWSPEETDAATQLGAL-PLNFSQRVLRTETFAVACTAQLTAL 252 >gi|209523429|ref|ZP_03271984.1| protein of unknown function DUF558 [Arthrospira maxima CS-328] gi|209496171|gb|EDZ96471.1| protein of unknown function DUF558 [Arthrospira maxima CS-328] Length = 252 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 + Q HYL VLR++ GD ++ +G+ G WL+ + G VE + V Sbjct: 22 TAGQQHYLGRVLRLQPGDRFIILDGRGGWWLA--IWKGGQNATVVEPIRINNELPIPVTL 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142 S K + + +++ + E+G+ + P+++ T + + R R AAEQ + Sbjct: 80 WVSMPKGSGFEEIVRCTTELGVSRLVPIMSARTVVVPSPQKLARWRRIATEAAEQSERQI 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL----------HAIAHIPNVAI 192 LP I P +++ + + V C + L ++ N + Sbjct: 140 LPEITDPLSIQQAWETLSDQGEEV-DKYICVARGDFPHLLNCLLAARTGQGKGYVYNSLL 198 Query: 193 L-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L IGPEGG+ + E E + F P+SLG RILRS TA + A++LV A+ Sbjct: 199 LAIGPEGGWTTPEVEEAINRRF-QPVSLGSRILRSVTAPMVALSLVAAV 246 >gi|256820668|ref|YP_003141947.1| 16S ribosomal RNA methyltransferase RsmE [Capnocytophaga ochracea DSM 7271] gi|256582251|gb|ACU93386.1| protein of unknown function DUF558 [Capnocytophaga ochracea DSM 7271] Length = 246 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 5/217 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++ VLR K GD + + NGK + +K+ + K + + + + + Sbjct: 23 EESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTLQLPRPYYLHLV 82 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P+I +++ T ++R +SA +Q LP Sbjct: 83 VAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCYLP 142 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSE 203 + P K + + +E L A+ P + +LIGPEG + + Sbjct: 143 KLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLS-RALKSFPERIIVLIGPEGDFSTN 201 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E T FV P+SLG LR++TAA+ A V I Sbjct: 202 EINTALQQAFV-PISLGDTRLRTETAAIVACHTVAVI 237 >gi|304437370|ref|ZP_07397329.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369626|gb|EFM23292.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 247 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 11/224 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 +G H+LA V+R + GD I + + ++ + + ++ +++ +T+ +V Sbjct: 17 TGGDAHHLARVMRAQIGDVITVVDAAGQAAEMAVTELARDAVHLRMQRVLPVETEGREVI 76 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY-TQNTHYNMDRVRTYTISAAEQ 137 + + +K ++D+++QK+ E+G + P++T RY + T R + AA+Q Sbjct: 77 LVQALLKGEKMDFVVQKAAELGAVCVCPIVTEHVVVRYDAKKTAVKAARWQKIADEAAKQ 136 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI---AHIPNVAILI 194 C L + P +L LL++ + A C + + + + V +++ Sbjct: 137 CGRRMLMRVAPIVSLTELLRDPAYIDAADTATVFCYEQEERQSMRTVLRGTEARRVTLIV 196 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 G EGG+ E T + +SLG RILR++TA++ A+A+ Q Sbjct: 197 GAEGGFSPAEA-TAVTAAGGQSVSLGHRILRAETASLTALAVTQ 239 >gi|56421036|ref|YP_148354.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus kaustophilus HTA426] gi|56380878|dbj|BAD76786.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 258 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 13/217 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 SGD +++A V+RMK GD I+ + +I + ++ ++ +++ Sbjct: 19 SGDDAYHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHVQARIVQWKEERSELPVRI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K + + +IQK E+G A R V+ + ++R + AAE Sbjct: 79 YIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAKKAEKKVERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAIL- 193 Q + +P + P + LL +FA E L A+ P A+L Sbjct: 139 QAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARHAALPALLSRLRPGGALLA 198 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG+ EE E L F +P SLGPRILR++TA Sbjct: 199 VFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETA 234 >gi|295706647|ref|YP_003599722.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium DSM 319] gi|294804306|gb|ADF41372.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium DSM 319] Length = 250 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 13/223 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQY 84 D H+++ V+RM EG + N + L +I + ++ +E+ S + V Sbjct: 21 DDAHHISRVMRMNEGSQFIACNEQGQAALCEIENISANEVKASIIEWISEEKELPVHVTI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + K ++L+ +IQK E+G A R V+ + + +DR AAEQ Sbjct: 81 VNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDKKSQKKVDRWNKIAKEAAEQS 140 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIP--NVAILI 194 +P + P + + L++ V A E + LHA+ A P +V +++ Sbjct: 141 HRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGETSHLHAVLSALKPGHSVLVVV 200 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG +E L F T GPRILR++TA + A++ + Sbjct: 201 GPEGGLTEQEVGVLEENEF-TISGFGPRILRAETAPLYALSAI 242 >gi|240145922|ref|ZP_04744523.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82] gi|257201987|gb|EEV00272.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82] Length = 251 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 17/224 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK G+ I + + +I+ + S +R + + + T+ + Y Sbjct: 20 GSDVNHIKNVLRMKPGEKIRISGPARENYFCEIAEIEDSFVRASILEKDETGTELPNRIY 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD---------RVRTYTISA 134 +F + K ++++ +IQK+VE+G+ I PV + N +D R + SA Sbjct: 80 LFQGLPKNDKMELIIQKAVELGVYEIIPVAMK---NCVVKLDAKKAAAKTARWQGIAESA 136 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A+Q +P + P + E + + ++V + G + E + A+ ++ I Sbjct: 137 AKQSKRSLIPKVSEPVSYKEAVAYAMKLDQKLVPYENERGMAATREAVEAVRPGESIGIF 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IGPEGG+ EE E + + +SLG RILR++TA +A++ Sbjct: 197 IGPEGGFAPEEIEAVKGE--MKLISLGSRILRTETAGFTTLAIL 238 >gi|321312028|ref|YP_004204315.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5] gi|320018302|gb|ADV93288.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5] Length = 256 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 +G+ H++ +V+RM EGD I+ + E ++ V K + + ++ ++ ++ Sbjct: 22 TGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKV 81 Query: 84 YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI S + K ++L+++IQK E+G A R V+ + +R AAE Sbjct: 82 YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAE 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVAI 192 Q +P + + + LL+ + V A E + + AI + +P ++ I Sbjct: 142 QSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLI 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG E E L V P LGPRILR++TA + A++ + Sbjct: 202 VFGPEGGLTEAEVERLTEQDGV-PCGLGPRILRTETAPLYALSAI 245 >gi|229597239|ref|YP_001763902.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia MC0-3] Length = 255 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D ++ VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + L Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAP 173 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 174 ADGELRLLLSPRASSPFASLPDAPPAA---TVTLLIGPEGGLSPDEEHAARARGF-TALS 229 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255 >gi|238927383|ref|ZP_04659143.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC 43531] gi|238884665|gb|EEQ48303.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC 43531] Length = 247 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFN--GKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 +G H+LAHV+R + GD I + + G+ E + + ++ F+++ ++T +V Sbjct: 17 TGGDAHHLAHVMRTQIGDVITVVDAEGQAAEMVVT-ALTRDAVHFRMQRVLPAETAGREV 75 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY-TQNTHYNMDRVRTYTISAAE 136 + + +K ++D+++QK+ E+G + P++T RY + R + AA+ Sbjct: 76 ILVQALLKGEKMDFIVQKAAELGAVCMCPIVTEHIVVRYDAKKAAAKAARWQKIADEAAK 135 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI---AHIPNVAIL 193 QC +L + P +L LL++ + C + + + A+ V ++ Sbjct: 136 QCGRRSLMTVAPIVSLAELLQDPAYIGAADTVTAFCYEQEERQSMRAVLRGTEARRVTLI 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +G EGG+ S + + +SLG RILR++TA++ A+A+ Q Sbjct: 196 VGAEGGF-SPAEAAAVTAAGGQSVSLGHRILRAETASLTALAVTQ 239 >gi|169815197|gb|ACA89780.1| protein of unknown function DUF558 [Burkholderia cenocepacia MC0-3] Length = 262 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D ++ VLR++ GD + LF+G G++ +++ Sbjct: 15 AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 67 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 68 ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + L Sbjct: 121 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAP 180 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 181 ADGELRLLLSPRASSPFASLPDAPPAA---TVTLLIGPEGGLSPDEEHAARARGF-TALS 236 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 237 LGPRVLRTETAGAAVLAALAARWGGW 262 >gi|89100454|ref|ZP_01173316.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911] gi|89084797|gb|EAR63936.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911] Length = 248 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +GD +H++ V+RMKEGD+I+ G+S ++E + Q VQ+ Sbjct: 17 AGDDFHHITRVMRMKEGDSIIC-----------AVRGGRSAVCRIEEITDEQVIAEVVQW 65 Query: 85 IFS----PIKT---------NRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMD 125 + PIK ++L+ +IQK E+G A R ++ + + Sbjct: 66 KEASSELPIKAAIASGLPKGDKLELIIQKGTELGASVFIPFTAARSIVKWDEKKAGKKTE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENS--LEK 180 R + AAEQ P + P +++ L+ K +D I + ++ E+S Sbjct: 126 RWQKIAKEAAEQSHRDLQPDVLQPVSMKELIDLGKGYDRKV-IAYEEDAKDGESSAFASL 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + ++ ++ GPEGG +E L F++ LGPRILR++TA + A+A V Sbjct: 185 LSGMEKGQSLLMVFGPEGGLSEKEVALLKDNGFLS-CGLGPRILRTETAPLYALAAV 240 >gi|116074941|ref|ZP_01472202.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916] gi|116068163|gb|EAU73916.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916] Length = 261 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 31/242 (12%) Query: 5 SHLKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + L+RL + P + T G GD+ HYL VLR++ GD++ + +G+ W +++ Sbjct: 2 AELRRLLI-APTRLPTSGSVLVLEGDERHYLRRVLRLRPGDHLAVVDGQGHSWSAQLMEG 60 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR--LDYMIQKSVEMGMGAIRPVITRY-TQ 118 G+ + +T + + + R +D +++ + E+G+ I+P+ +++ T Sbjct: 61 GEQLDLHQPLDQPLETASAPRPRLGLAVVGVRRGMDDVMRMACELGIDCIQPLSSQWRTP 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---------------DHNC 163 DR T A EQC+ L +P + +T+E K+W Sbjct: 121 QAEDRPDRWHTILKEAVEQCERLWMPELL--STVEA--KDWWSMPAEGSLKALATTRQPD 176 Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 + F D + +L+ +IP + I IGPE G+ + E++ + TPL +G I Sbjct: 177 SVRFDDWLACEQAALDH----GNIPELWIAIGPEAGWTATEQDDAQRNGW-TPLEMGRTI 231 Query: 224 LR 225 LR Sbjct: 232 LR 233 >gi|187251700|ref|YP_001876182.1| hypothetical protein Emin_1295 [Elusimicrobium minutum Pei191] gi|186971860|gb|ACC98845.1| Conserved hypothetical protein [Elusimicrobium minutum Pei191] Length = 230 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 16/212 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQ 83 +GD+ +L V+R EGDNI +F+G+ ++ + I V K I V + + ++ Sbjct: 16 TGDEAKHLFCVMRAAEGDNIKIFDGRGKKFNAVIKEVAKDIVVGSVISEIALRPLPYNLT 75 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQC 138 F+P+ ++ + ++ K ++G+ + PVIT T++ +R I+A +QC Sbjct: 76 LCFAPVDKSKTEEILDKCTQLGVSSFLPVITERTEHDILKKWENKKERWEQIIIAAVKQC 135 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 + +P + P E LK I + E S +S K A + I IGP G Sbjct: 136 ETAFVPRLLAPQKFEQALKIPGKTI-IAYEKENSVSLSSAVKGEEKA----IKIFIGPAG 190 Query: 199 GYHSEEKE--TLHSLPFVTPLSLGPRILRSDT 228 G+ E E L VT LG I+R++T Sbjct: 191 GFSPREVEEAVLQGAVLVT---LGVNIMRAET 219 >gi|16079598|ref|NP_390422.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp. subtilis str. 168] gi|221310469|ref|ZP_03592316.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221314792|ref|ZP_03596597.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319715|ref|ZP_03601009.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323992|ref|ZP_03605286.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. SMY] gi|1730989|sp|P54461|RSME_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|1303811|dbj|BAA12467.1| YqeU [Bacillus subtilis] gi|1890060|dbj|BAA12079.1| YqeU [Bacillus subtilis] gi|2634990|emb|CAB14486.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. subtilis str. 168] Length = 256 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 +G++ H++ +V+RM EGD I+ + E ++ V K + + ++ ++ ++ Sbjct: 22 TGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKV 81 Query: 84 YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI S + K ++L+++IQK E+G A R V+ + +R AAE Sbjct: 82 YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAE 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVAI 192 Q +P + + + LL+ + V A E + + AI + +P ++ I Sbjct: 142 QSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLI 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG E E L VT LGPRILR++TA + A++ + Sbjct: 202 VFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPLYALSAI 245 >gi|150025667|ref|YP_001296493.1| hypothetical protein FP1617 [Flavobacterium psychrophilum JIP02/86] gi|149772208|emb|CAL43684.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 234 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 8/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++ VLR EGD + + NG + +K+ K K+E Q + Sbjct: 21 EESKHIIKVLRKTEGDILHVTNGLGNLFSTKVILASEKKCTVKIETTETYQPTDFYIHLA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ EMG+ I P+I ++ +R +SA +Q LP Sbjct: 81 VAPTKMNDRFEWFLEKATEMGVHEITPIICDRSERKIVKNERFDKIILSAMKQSLQFFLP 140 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + P + +F+ + D N I +ET N + I ILIGPEG + + Sbjct: 141 KLNEPISFKDFINEQHDGNLCIAHCEET----NKKLLKNTIKAKEKYTILIGPEGDFSEK 196 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + + ++ P+SLG LR++TAAV A Sbjct: 197 EIQLALANNYI-PVSLGNTRLRTETAAVVA 225 >gi|254246356|ref|ZP_04939677.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184] gi|124871132|gb|EAY62848.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184] Length = 267 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D ++ VLR++ GD + LF+G G++ +++ Sbjct: 20 AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 72 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 73 ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 125 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 P V+ + + R ++ EQC +P + L Sbjct: 126 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAP 185 Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D +++ + SL A V +LIGPEGG +E+ + F T LS Sbjct: 186 ADGELRLLLSPRASSPFASLPDAPPAA---TVTLLIGPEGGLSPDEEHAARARGF-TALS 241 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++TA A +A + A G W Sbjct: 242 LGPRVLRTETAGAAVLAALAARWGGW 267 >gi|311031620|ref|ZP_07709710.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. m3-13] Length = 253 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 17/250 (6%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKIS 59 MKI ++R FV+ ++ +G+ H++ V+RM E D +L + + L KI+ Sbjct: 1 MKI---VQRYFVNSNQIDESSISITGEDVHHITRVMRMNEDDQLLCSCSETRQTALCKIA 57 Query: 60 YVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRP 111 + + VE+ V K ++L+ +IQK E+G A R Sbjct: 58 EITNDMVVTDIVEWIKAETEIPVRVSIANGLPKGDKLELVIQKGTELGAESFIPFNAARS 117 Query: 112 VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADE 170 ++ + ++R AAEQ +P + P TL LL K+ D+ +IV +E Sbjct: 118 IVKWDEKKGKKKVERWNKIAKEAAEQSHRSMVPVVEEPATLAQLLEKSRDYTYKIVAYEE 177 Query: 171 TCGSENSLEKLHAIAHI-PNVAIL--IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + S + + ++ P +IL GPEGG +E + L FV P +LGPRILR++ Sbjct: 178 SAKEGESSAFANTLKNMKPGESILCVFGPEGGLAQKEIDKLVEHGFV-PCALGPRILRTE 236 Query: 228 TAAVAAMALV 237 TA + +A + Sbjct: 237 TAPLYVLAAI 246 >gi|291529135|emb|CBK94721.1| RNA methyltransferase, RsmE family [Eubacterium rectale M104/1] Length = 246 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 110/222 (49%), Gaps = 9/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ I + + + IS + + ++ + T+ + Sbjct: 19 TGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEVIAAIDSADETGTELDNHI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136 ++ + K ++++ +IQK+VE+G+ I PV + + + R + SAA+ Sbjct: 79 VLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDDKKAAKKLQRWQAIAESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + P T + LK + + +V + G + + E + + + +++G Sbjct: 139 QSKRTVIPTVNQPVTYKEALKIASELDITLVPYENERGMDATREIMGQLKAGQTIGVVVG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ EE + + +SLG RILR++TA +AA+A++ Sbjct: 199 PEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240 >gi|115455113|ref|NP_001051157.1| Os03g0729700 [Oryza sativa Japonica Group] gi|113549628|dbj|BAF13071.1| Os03g0729700 [Oryza sativa Japonica Group] Length = 330 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 20/221 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDG---EWLSKISYVGKSIRFKVEYQSRSQTK-QSD 81 GD++ ++ VLR+ D + LF+G G + K+ G ++ + + + Q Sbjct: 102 GDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLEDARLIAPDGIQWH 161 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDI 140 V F +K R D++++K E+G ++ P++T N +DR++ ++A +QC Sbjct: 162 VYAAFGTLKGGRADWLVEKCTELGACSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQR 221 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA------ILI 194 + + PP + L Q V + S E ++ +P +++ Sbjct: 222 IHGMLLNPPIQIADL--------QPVVSQSKLAFVASAESPPLLSTLPKSCNEESGLLIV 273 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEG + EE L + V P+ LGP LR +TA ++ ++ Sbjct: 274 GPEGDFTEEEVNVLKASGAV-PVGLGPCRLRVETATISLLS 313 >gi|149280553|ref|ZP_01886669.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39] gi|149228668|gb|EDM34071.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39] Length = 234 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 10/204 (4%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRS-QTKQSDVQYIFSPIKT- 91 VLR+ GD + L +G+ G + ++I GK +++ +V + + Q + + +P K Sbjct: 27 VLRLGVGDVVNLIDGRGGFYEAEIIEAGKRNVKLRVTHARQEFQKRNHHLHIAIAPTKNI 86 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 +RL++ ++K+ E+G+ I P++ ++ DR+ SA +Q P + P T+ Sbjct: 87 DRLEWFLEKATEIGIDEITPLLCERSERKIVKEDRLFKVITSAVKQSLQAYHPVLNPLTS 146 Query: 152 L-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS 210 + +FL + D I + E E I ILIGPEG + EKE H+ Sbjct: 147 MSDFLRQENDTFKMIAHCIDGVPREYISE---VIQPQGRYTILIGPEGDF--SEKEIQHA 201 Query: 211 L-PFVTPLSLGPRILRSDTAAVAA 233 L PL+LG LR++TAA+AA Sbjct: 202 LQSGYKPLTLGNTRLRTETAALAA 225 >gi|315223790|ref|ZP_07865639.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314946236|gb|EFS98236.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 246 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 5/217 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++ VLR K GD + + NGK + +K+ + K + + + + + Sbjct: 23 EESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTPQLPRPYYLHLV 82 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P+I +++ T ++R +SA +Q LP Sbjct: 83 VAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCYLP 142 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSE 203 + P K + + +E L A+ P + +LIGPEG + + Sbjct: 143 KLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRL-LFRALKPFPERITVLIGPEGDFSTN 201 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E T F+ P+SLG LR++TAA+ A V I Sbjct: 202 EINTALQQAFM-PISLGDTRLRTETAAIVACHTVAVI 237 >gi|152977886|ref|YP_001343515.1| hypothetical protein Asuc_0200 [Actinobacillus succinogenes 130Z] gi|150839609|gb|ABR73580.1| protein of unknown function DUF558 [Actinobacillus succinogenes 130Z] Length = 243 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 17/231 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR-SQTKQSD 81 + S + +++ VLRM+ G+ + LF+G + + + IS K V + R S ++S Sbjct: 19 RLSEEAANHVGRVLRMQAGEALELFDGSNHIYPAVISRADKKT-VTVNIRERISDDRESP 77 Query: 82 VQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTI 132 + + + R+++ IQKSVE+G+ I P+ + DR+ + + Sbjct: 78 LAIHLGQVISRGERMEFTIQKSVELGVKVITPLWSERC-GVKLEGDRLAKKIRQWQKIAV 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 SA EQC +P I P L+ D ++ S +L + A + + Sbjct: 137 SACEQCGRNVIPQIRPMMKLQDWCAENDGALKLNLHPRAQYSIKTLPTIPA----EGIRL 192 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 LIG EGG +E F T + LG RILR++TAA+ A+ +Q GD Sbjct: 193 LIGSEGGLSPQEIALTEQQGF-TEILLGKRILRTETAALTAITALQICFGD 242 >gi|313901575|ref|ZP_07835017.1| protein of unknown function DUF558 [Thermaerobacter subterraneus DSM 13965] gi|313468164|gb|EFR63636.1| protein of unknown function DUF558 [Thermaerobacter subterraneus DSM 13965] Length = 252 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 15/247 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 +FVD L + D H+L VLR + GD ++ WL +++ G + + Sbjct: 6 VFVDRELAPGAAAPLAADDAHHLLRVLRRRPGDPVVAVTPAGRRWLGRLAP-GSPPQLEA 64 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYN 123 + S V K +++ +I+ E+G+ PV+ + Sbjct: 65 REELPSSEPPVAVTLGQGLPKGPKMEEVIRHGTEVGVARFVPVLAARSVSRPGEAGAAQR 124 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEK 180 + R + AA Q +P + PP +L+ LL WD +E G LE Sbjct: 125 VQRWQRIAREAARQSQRSAVPQVEPPCSLDGLLSRGEAWDLILMPWEEEEARGLREELEA 184 Query: 181 LHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A P V IL+GPEGG+ + E E ++LGPRILR++TA V L Sbjct: 185 AAAAWGRPAAGRRVLILVGPEGGWDAGEVEAARRA-GARVVTLGPRILRTETAGVLVAGL 243 Query: 237 VQAICGD 243 V + GD Sbjct: 244 VLHVLGD 250 >gi|210623864|ref|ZP_03294099.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275] gi|210153290|gb|EEA84296.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275] Length = 256 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 12/228 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 G+ ++ VLR +EG+ + + +G+D E++ +I + K R ++S ++ Sbjct: 27 EGEDVKHITKVLRYREGEKLEICDGEDNEYVGEIKSMSKEEVCLDIIDKRDIKRESKLRV 86 Query: 84 --YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 Y P K +++Y++QK E+G I V T+ + + ++R AA Sbjct: 87 RVYQGMP-KGPKMEYILQKLTEVGTDEIILVDTKRSVAKVDGKKEDKKLERWERIIYEAA 145 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +Q +P + + + L++ N + E + ++++ + I ++ I IG Sbjct: 146 KQSKRGKIPTLKGVLSFKEALEDMKRNDYNICPYEDERNIPLVKEIRGL-DIESIGIFIG 204 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG EE + L ++LGPRILR++TA+ A ALVQ GD Sbjct: 205 PEGGIADEEIDALKE-NGAKVVTLGPRILRTETASTVASALVQYELGD 251 >gi|294054743|ref|YP_003548401.1| protein of unknown function DUF558 [Coraliomargarita akajimensis DSM 45221] gi|293614076|gb|ADE54231.1| protein of unknown function DUF558 [Coraliomargarita akajimensis DSM 45221] Length = 249 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 9/218 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIF 86 + H+L V R K G+ + L +G+ + +S K+ + VE + + ++ I Sbjct: 25 ESHHLVRVFRAKAGETVELLDGQGRRYQGVLSLAHAKAAQVAVESVELIERPKPELTLIQ 84 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDI 140 + K +D +++ + E+G I+PV T + +++ R I A +QC + Sbjct: 85 ALPKGKAMDLILRMATEIGATRIQPVFTDQGEVQIKGERLTSKVEKWRVGMIEACKQCGL 144 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQI-VFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + P L+ LL + V A GS L + + + +GPEG Sbjct: 145 AWLPDLAEPIALKTLLASEAATGTTRVVASLEAGSRPLAAVLDELEQPKRIEVAVGPEGD 204 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + E L F P+ LG +LR++TAA +++V Sbjct: 205 FSAAEYALLSECAF-KPVRLGANVLRAETAAAYLLSVV 241 >gi|288555682|ref|YP_003427617.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4] gi|288546842|gb|ADC50725.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4] Length = 250 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DV 82 +GD ++A V+RM+EG+ I++ N L+K+ + +S I+ +V + +T+ V Sbjct: 19 TGDDVKHIARVMRMQEGEEIIVSNNAGRTVLAKLKKLSESDIQAEVLEELDPKTELPIKV 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ + QK E+G+ +P ++ + ++R+ AAE Sbjct: 79 TVAQGLPKGDKLELITQKGTELGVSCFQPFQASRSIVKWDMKKAKKKVERLEKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAI 192 Q +P I + LL+ + + A E LH + + +V I Sbjct: 139 QSYREIIPTIKEAASFTQLLETIESYTHTIVAYEESAKTGEASNLHNVLNQVKSGDSVLI 198 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGG EE L V LGPRI+R++TA + MA + Sbjct: 199 VIGPEGGLTEEEVSALEGKGAVL-CGLGPRIIRTETAPLYVMAAI 242 >gi|323342116|ref|ZP_08082349.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464541|gb|EFY09734.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 233 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 23/226 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI---SYVGKSIRFKVEYQSRSQTKQSD 81 S DQ H VLRM+EGD+I L + + ++ + +++ +E+ K+ Sbjct: 15 SADQLHQCRKVLRMQEGDSIRLVDHRGNGVIASFTDDTLTHLTVKEPIEWNE----KKFR 70 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAA 135 ++ + S I++ RL++MIQK+ E G+ I V+ + + + M+R+ A+ Sbjct: 71 LRIVASLIRSERLEWMIQKACECGVDEIILYQSQHGVVRDFGKRSDRKMERLNLIAKEAS 130 Query: 136 EQC-DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-IPNVAIL 193 EQ +P T + D N ++AD G E L +H + ++ +L Sbjct: 131 EQSYRQYEVPVKGIATLDDLPQYQSDLN---LYAD--IGDEAHL--IHTVREDTKSITVL 183 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +GPEGG+ ++E+ ++ + +SLG +LR++TA++ +V A Sbjct: 184 VGPEGGFSNDERSKFEAMGY-RQVSLGDNVLRAETASIYICNIVSA 228 >gi|259046670|ref|ZP_05737071.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036835|gb|EEW38090.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 249 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-------YVGKSIRFKVEYQSRSQT 77 S +Q H L V+RMK + + + + ++ V K++ KVE Sbjct: 20 SKEQIHQLKKVMRMKVEEQFEVVDENSTLAIVELVCLEPFEVRVIKTLNQKVELP----- 74 Query: 78 KQSDVQYIFSPI-----KTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN-THYNMDR 126 +F+ I K ++LD+++QK+ E+G+ I P+ + ++ ++ +R Sbjct: 75 -------VFTAIAVGLSKGDKLDWIVQKATELGVNEIIPIEMSRNVVKWNKDKASKKTER 127 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLH 182 ++ A+EQ L LPF+ T++ L++ Q + A E E ++ L Sbjct: 128 LQKIAEEASEQSHRLKLPFVSEVMTIDSLIEYTKTYHQKLIAYEEAAKEGERVQLVKSLQ 187 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A+ + + GPEGG +E L F T SLGPRILR++TA + A++ + C Sbjct: 188 ALKEGEKIVFVFGPEGGIDEKEVAKLQMNEFHT-CSLGPRILRAETAPLYALSALSYQC 245 >gi|229597240|ref|YP_001807272.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria MC40-6] Length = 255 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 A VLR++ GD + LF+G G++ +++ + K + +Q + D P + Sbjct: 35 AQVLRLQPGDTLALFDGSGGQYRARLVEIDK-------RNALAQIEAFDPAEAEPPYRVT 87 Query: 92 --------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137 +++D++I+K+VE+G+ A+ P V+ + + R ++ EQ Sbjct: 88 LAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLSGERADKRVAHWRGVVRASCEQ 147 Query: 138 CDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 C +P + P L D +++ + SL A V + Sbjct: 148 CGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRASVPFASLPDAPPAAE---VTL 204 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 LIGPEGG +E+ + F T LSLGPR+LR++TA A +A + A G W Sbjct: 205 LIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 255 >gi|319651611|ref|ZP_08005738.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2] gi|317396678|gb|EFV77389.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2] Length = 249 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 19/227 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-----YVGKSIRFKVEYQSRSQTKQS 80 G+ H++ V+RMKEGD I+ + L I+ +V + V++ S + Sbjct: 19 GEDRHHIVKVMRMKEGDQIICVDQSQNSALCAIAEITDEHVAAEV---VQWIEGSSELPA 75 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISA 134 ++ + K ++L+++IQK E+G + R V+ + + +R + A Sbjct: 76 NITIVSGLPKGDKLEWIIQKGTELGAHRFIPFTSARSVVKWDAKKSVKKAERWQKIAKEA 135 Query: 135 AEQCDILTLPFIYPP-TTLEFLLKNWDHNCQIV-FADETCGSENSL--EKLHAIAHIPNV 190 AEQ +P ++ P L + D++ +++ F +E E+S+ + L ++ ++ Sbjct: 136 AEQSHRTMVPEVFAPLDLKSLLKLSGDYSYKLIAFEEEAKQGEDSVLYKTLTSMNKGQSL 195 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ GPEGG E L FV LGPRILR++TA + ++ V Sbjct: 196 MVVFGPEGGLSDNEVSLLQEAGFVA-CGLGPRILRTETAPLYLLSAV 241 >gi|315635117|ref|ZP_07890395.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393] gi|315476079|gb|EFU66833.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393] Length = 211 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 21/218 (9%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPI--KTNRL 94 M+ GD + LF+G + + + I+ + K V+ SR ++S + + + R+ Sbjct: 1 MQPGDQLELFDGSNHIYQAVINAITKK-SVDVDILSRQLDDRESPLAIHLGQVISRGERM 59 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTLPF 145 ++ IQKSVE+G+ I P+ +++ +D R I+A EQC T+P Sbjct: 60 EFTIQKSVELGVNVITPL---WSERCGVKLDGERMEKKIQQWQKIAIAACEQCGRNTIPE 116 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 I P L+ D ++ + S+ L AI+ V +LIG EGG +E Sbjct: 117 IRPLMKLQQWCAEPDDALKLNLHPR---ASYSIRTLPAISK-AGVRLLIGSEGGLSPQEI 172 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 FV L LG R+LR++TAA+AA+ +Q GD Sbjct: 173 AQTEEHGFVEVL-LGKRVLRTETAAMAAITALQVCFGD 209 >gi|171992137|gb|ACB63056.1| protein of unknown function DUF558 [Burkholderia ambifaria MC40-6] Length = 262 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 A VLR++ GD + LF+G G++ +++ + K + +Q + D P + Sbjct: 42 AQVLRLQPGDTLALFDGSGGQYRARLVEIDK-------RNALAQIEAFDPAEAEPPYRVT 94 Query: 92 --------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137 +++D++I+K+VE+G+ A+ P V+ + + R ++ EQ Sbjct: 95 LAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLSGERADKRVAHWRGVVRASCEQ 154 Query: 138 CDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 C +P + P L D +++ + SL A V + Sbjct: 155 CGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRASVPFASLPDAPPAAE---VTL 211 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 LIGPEGG +E+ + F T LSLGPR+LR++TA A +A + A G W Sbjct: 212 LIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 262 >gi|323154655|gb|EFZ40854.1| RNA methyltransferase family protein [Escherichia coli EPECa14] gi|323173840|gb|EFZ59469.1| RNA methyltransferase family protein [Escherichia coli LT-68] Length = 182 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143 + ++++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC + Sbjct: 27 RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 86 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P LE D ++ S N+L + V +LIGPEGG ++ Sbjct: 87 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 141 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 142 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 180 >gi|312972813|ref|ZP_07786986.1| RNA methyltransferase family protein [Escherichia coli 1827-70] gi|331659081|ref|ZP_08360023.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206] gi|310332755|gb|EFP99968.1| RNA methyltransferase family protein [Escherichia coli 1827-70] gi|331053663|gb|EGI25692.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206] Length = 182 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143 + ++++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC + Sbjct: 27 RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 86 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P LE D ++ S N+L + V +LIGPEGG ++ Sbjct: 87 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 141 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 142 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 180 >gi|225010758|ref|ZP_03701227.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-3C] gi|225005129|gb|EEG43082.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-3C] Length = 237 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 15/222 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 S ++ + VLR K GD I L NGK +IS GK+++ + K + Sbjct: 19 SQEESKHATKVLRKKTGDLIHLTNGKGLMAQGEISDTAGKTVQVSLIEIHLQTPKPYSLD 78 Query: 84 YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K N R ++ ++K+ E+G+ +I P+I ++ +R +SA +Q Sbjct: 79 LYVAPTKMNDRYEWFLEKATEIGLSSITPIICDQSERKVIKAERYEKVLLSAMKQSLQAY 138 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVF----ADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 LP ++P +L+ L + D + + +F AD+ + NSL+ + ++I IGPEG Sbjct: 139 LPLLHPAISLKKCL-DQDISGEKLFAHCEADKMKTALNSLDLKN-----KKLSIFIGPEG 192 Query: 199 GYH-SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + SE K+ + P+S G LR++TAA+ A A V A Sbjct: 193 DFSLSEIKKAIEK--GCKPVSFGNTRLRTETAALYACASVAA 232 >gi|149372812|ref|ZP_01891833.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49] gi|149354509|gb|EDM43074.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49] Length = 236 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 6/210 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85 D+ ++ VLR KEGD + + NG+ + ++I S KS V S Q + Sbjct: 21 DESRHIHKVLRKKEGDQLHITNGEGYLFTTEILSSNPKSCIATVTETSLEQPLPYQLHMA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P+I +++ +R +SA +Q LP Sbjct: 81 VAPTKLNDRFEWFLEKATEIGITEITPIICDHSERKVIKKERYEKIIVSAMKQSLSCYLP 140 Query: 145 FIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + T +K + D N + + E ++ +L+ + I + +LIGPEG + + Sbjct: 141 KLNDAITFTAFMKLSHDENFKSIAHCENEPTKKALK--NCIKPNFDSLLLIGPEGDFSKK 198 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + F T +SLG R LR++TAA+ A Sbjct: 199 EIKQAKDKDF-TEVSLGDRRLRTETAAIVA 227 >gi|283769587|ref|ZP_06342483.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219] gi|283103855|gb|EFC05241.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219] Length = 235 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 31/226 (13%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGK---------DGEWLSKISYVGKSIRFKVEYQSRSQT 77 +Q H+ HVL + L+++GK DG++ +V K F E + Sbjct: 21 EQEHHAHHVLHLDHEVLRLVYDGKAFFAIATVIDGQFQC---FVEKEDLFVNELEQ---- 73 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131 ++ + I+ + ++++QK+ E+G+ I P + T + R Sbjct: 74 ---EITLCMALIRKEKFEWVLQKATELGVKKIVPFTSSRTIVKVQKEKEMKMKKRYGQIV 130 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 + A++QC +P + L+ LKN+ +V A+ET E++ L N Sbjct: 131 LEASQQCKRNYIPEVLEVVHLD-DLKNYQSEDNVV-ANETKHQEHTFFDLKTK---KNTT 185 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+IGPEGG+ SEE L + F +SLG RILR++TAA+ A+++V Sbjct: 186 IVIGPEGGFSSEEIVKLEKMGF-RSISLGNRILRAETAAIFAVSVV 230 >gi|332753790|gb|EGJ84169.1| RNA methyltransferase family protein [Shigella flexneri K-671] gi|332754361|gb|EGJ84727.1| RNA methyltransferase family protein [Shigella flexneri 2747-71] Length = 178 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143 + ++++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC + Sbjct: 23 RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 82 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P LE D ++ S N+L + V +LIGPEGG ++ Sbjct: 83 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 137 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 138 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 176 >gi|86134044|ref|ZP_01052626.1| protein of unknown function (DUF558) [Polaribacter sp. MED152] gi|85820907|gb|EAQ42054.1| protein of unknown function (DUF558) [Polaribacter sp. MED152] Length = 235 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 18/221 (8%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD-----V 82 + ++ VLR KEGD + + NGK + ++I++ K Q +S T++ + Sbjct: 22 ESRHIVKVLRKKEGDILKITNGKSYLFDAEITFASDK---KCIVQIKSATEKLKPWPYYL 78 Query: 83 QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K N R ++ ++K+ E+G+ I P+I ++ ++R SA +Q Sbjct: 79 HIAIAPTKNNDRTEWFLEKATEIGIDEITPIICSNSERRVVKLERFEKIIQSAMKQSLKF 138 Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 TLP + EF+ ++ I ++ +NSL KL A + + ILIGPEG + Sbjct: 139 TLPKLNKAIKFNEFIQQDIPGLKCIAHCEDQ--EKNSL-KLVA-KNTDKITILIGPEGDF 194 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA---MALVQ 238 +E + + F TP+SLG LR++TAA+ A ++LVQ Sbjct: 195 SVDEIKKALNANF-TPISLGESRLRTETAALVAVNTISLVQ 234 >gi|291484991|dbj|BAI86066.1| hypothetical protein BSNT_03788 [Bacillus subtilis subsp. natto BEST195] Length = 256 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 15/226 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR--FKVEYQSRSQTKQSDV 82 +G+ H++ +V+RM EGD I+ + E ++ V K +E+ ++++ V Sbjct: 22 TGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNKNRELPIKV 81 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAA 135 YI S + K ++L+++IQK E+G A R V+ + +R AA Sbjct: 82 -YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAA 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVA 191 EQ +P + + + LL+ + V A E + + AI + +P ++ Sbjct: 141 EQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLL 200 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E E L VT LGPRILR++TA + A++ + Sbjct: 201 IVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPLYALSAI 245 >gi|311069145|ref|YP_003974068.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942] gi|310869662|gb|ADP33137.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942] Length = 256 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 18/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ G A +G+ H++ +V+RM GD I+ + E ++ V K Sbjct: 1 MQRYFIELTKQQMEAGPAFMITGEDVHHITNVMRMSAGDEIICCSLDGHEAKCELQSVSK 60 Query: 64 S--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITR 115 E+ ++ V K ++L+++IQK E+G A R V+ Sbjct: 61 EKVACLVSEWTGANRELPIKVHIASGLPKGDKLEWIIQKGTELGSSMFLPFQAARSVVKL 120 Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETC 172 + +R AAEQ +P + P T + LL +++D C + + + + Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEIPDVAPVHTFQQLLSKVQDFD-KCVVAYEESSK 179 Query: 173 GSENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E S + L ++ ++ I+ GPEGG E E L V P LGPRILR++TA Sbjct: 180 QGETSALVSVLSSLPDQSSLLIIFGPEGGLTESEVEQLKDKGAV-PCGLGPRILRTETAP 238 Query: 231 VAAMALV 237 + A+ V Sbjct: 239 LYALGAV 245 >gi|222833711|gb|EEE72188.1| predicted protein [Populus trichocarpa] Length = 158 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Query: 94 LDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 +D++I+K+VE+G+ AI+P V+ + + +A EQC LP + Sbjct: 1 MDWLIEKAVELGVSAIQPLQAARSVVRLSGERATKRQAHWQALIEAACEQCGRNRLPALA 60 Query: 148 PPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEK 205 P LE L + ++ + S L + A V +LIGPEGG EE+ Sbjct: 61 PVANLESWLTSVPATAARLALSPRASASLPELAQAEREAWRAGGVTLLIGPEGGLSPEEE 120 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + F+ +SLGPRILR++TA + +A + AI G Sbjct: 121 DRARRAGFIG-VSLGPRILRTETAGLTCLATLNAILG 156 >gi|240047429|ref|YP_002960817.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma conjunctivae HRC/581] gi|239985001|emb|CAT04994.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma conjunctivae] Length = 226 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD--------RVRTYTISAAEQCDI 140 +KT ++ IQK+ E+G+ I P Y+QN + R + AA+Q Sbjct: 76 LKTKAFEFAIQKATELGVNTIIPF---YSQNVEQKLGNDIDKKLVRWQEIITHAAQQSFR 132 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I P ++ L++N+ H A E + + L N L+GPEGG+ Sbjct: 133 NVIPVIEKPIKIKTLIENYQHMKNKFIAHEKENNNLMINSLFE----NNTIFLVGPEGGF 188 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EE E + F +SLG RILR++TAA+ ++ ++ Sbjct: 189 TEEEVEIAENFGF-QAISLGKRILRAETAAIFLLSRIK 225 >gi|333029175|ref|ZP_08457236.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides coprosuis DSM 18011] gi|332739772|gb|EGJ70254.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides coprosuis DSM 18011] Length = 231 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 10/219 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 D+ + + VLR+ EGD+I L +GK + ++I+ K F + + + Sbjct: 17 SDEAKHCSRVLRLTEGDHITLTDGKGNFYEAEITLTTPKKCLFNILETHTPTPPKVYIHL 76 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 P K +R +++ +K+ E+G + ++++ DRV +SA +Q TL Sbjct: 77 AMGPTKNMDRNEWVAEKATEIGFNEFTFLNCQFSERKIIKTDRVEKILVSAMKQSKRATL 136 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGGYH 201 P + T + + N Q A C EN L++L+ I N ILIGPEG + Sbjct: 137 PKLNEMTPFKTFI-TQPFNGQKFIAH--CYKENQELLKELYTIGE--NALILIGPEGDFS 191 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 EE + F P+SLG LR++TAA+ A + + + Sbjct: 192 PEEIQLALDNGF-QPISLGDSRLRTETAAIFACSTINIL 229 >gi|260589081|ref|ZP_05854994.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583] gi|260540501|gb|EEX21070.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583] Length = 246 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 9/238 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R FV+ Q SG +++ +VLRMK + IL+ +G+D E+ I +G+ Sbjct: 3 RFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEILA 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + Y + + S Y+F + K+++++ +IQK+VE+G+ + PV ++ + Sbjct: 63 HIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVASKRAVVKLDKKKE 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLE 179 + R + + SAA+Q + +P I + + + ++F E G + + E Sbjct: 123 EKKITRWQAISESAAKQSKRMYVPEITNVMSFQQAVDYAGKLDIVLFPYELADGMKKTKE 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + I +V I IGPEGG+ E ++LG RILR++TA + +A++ Sbjct: 183 IIGKIKPGQSVGIFIGPEGGFEESEVALAKEKADAQVITLGKRILRTETAGLTVLAIL 240 >gi|312793761|ref|YP_004026684.1| hypothetical protein Calkr_1578 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876840|ref|ZP_07736817.1| protein of unknown function DUF558 [Caldicellulosiruptor lactoaceticus 6A] gi|311796355|gb|EFR12707.1| protein of unknown function DUF558 [Caldicellulosiruptor lactoaceticus 6A] gi|312180901|gb|ADQ41071.1| protein of unknown function DUF558 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 243 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 118/225 (52%), Gaps = 12/225 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + +++ VLR +EGD I L +G + ++ S+I + K+ R K+ ++++ + ++ IF Sbjct: 22 EDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKN-RIKLLIENKTLNDRESIKNIF 79 Query: 87 ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138 IK ++D+++QK+ E+G+ I PV+++ ++ ++R A +QC Sbjct: 80 LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISEKQEKKVERWLKIAQEAQKQC 139 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I P + + + + I+ E K + + N+ ILIGPEG Sbjct: 140 LRPVPPLIEMPIRISEIKEKYLDKLDILLV--PYEKEFGTAKWNLSSDYNNIGILIGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ EE E L + V +SLG RILRS+TA++AA++++ G+ Sbjct: 198 GFEEEEIEDLKTFKNVQVISLGKRILRSETASIAALSILMHELGE 242 >gi|146328991|ref|YP_001209347.1| hypothetical protein DNO_0433 [Dichelobacter nodosus VCS1703A] gi|146232461|gb|ABQ13439.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 240 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 24/226 (10%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 +H+ VLR++E D + + G + +I+ + + Y + + + I P Sbjct: 25 HHHALKVLRLRENDAVDVICGDGYFYHGEITCIDRKQTLVRVYSRSEHSTRPKTEVILLP 84 Query: 89 --IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI---------SAAEQ 137 +K +D+++QKSVE+G +R VI T+ + ++ R + ++A Q Sbjct: 85 ALLKGEPMDWVLQKSVELG---VRRVIPMNTERSERRIEGDRLTSKYEHWQGILQASALQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGP 196 C P + P LK ADE E AI +P+ +A+++GP Sbjct: 142 CGRAEWPLLSLPMNFIDALKT--------IADEKWILSPHDETTPAIKEMPSSIALMVGP 193 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 EGG+ +E ++ + + T G RILR+DTA+V A+ Q + G Sbjct: 194 EGGFSEDEVQSAVHMGWKTH-CFGSRILRADTASVVAVVKAQLLLG 238 >gi|88802426|ref|ZP_01117953.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P] gi|88781284|gb|EAR12462.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P] Length = 235 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 9/217 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYI 85 + ++ VLR GD + + NGK + +I + K ++ + + + + Sbjct: 22 ESKHIVRVLRKTTGDILKITNGKGYLFDVEICFANDKKCTAKIIKAEEKPKPWNYSLHIA 81 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R+++ ++K+ E+G+ I P+I ++ + +DR +A +Q TLP Sbjct: 82 IAPTKNNDRIEWFLEKATEIGIDEITPIICSNSERRYVKIDRFEKIIQAAMKQSLKCTLP 141 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 I P +F+ +++D I ++ +N ++ + + + ILIGPEG + + Sbjct: 142 KINEPIKFNDFIKQDFDGTICIAHCEDQ--EKNFIKSVVQTSE--KITILIGPEGDFSLD 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E F P+SLG LR++TA + A+ +V I Sbjct: 198 EIAKALDKKF-KPISLGKSRLRTETAGIVAVNIVSFI 233 >gi|257125127|ref|YP_003163241.1| hypothetical protein Lebu_0332 [Leptotrichia buccalis C-1013-b] gi|257049066|gb|ACV38250.1| protein of unknown function DUF558 [Leptotrichia buccalis C-1013-b] Length = 237 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 10/212 (4%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDVQYIFS 87 +++ +V R+ GD + + +G + E+ +KI + K + K+ E S + ++ Sbjct: 27 NHIQNVYRLNIGDELRIIDG-EYEYFTKIIEISKKEVAVKILEKNEDSYSLNINIDVAMG 85 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K ++++ IQK E+G+ +I P+ T R + ++ T +QC + I Sbjct: 86 ILKNDKMNLAIQKLTEIGVKSIIPLKTERVVVRINEKKEKWDTVARETLKQCRGVKFTEI 145 Query: 147 YPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 P L E K +D +I+FA E SL ++ N+ +IGPEGG EE Sbjct: 146 LPVKKLAEIDYKKYD---KIIFAYENSNESKSLSEIIKQKD-KNILYIIGPEGGIAQEEV 201 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L + + +SLG RILR++TAA+ ++ Sbjct: 202 DFLKNNKAI-EISLGKRILRAETAAIVVCGII 232 >gi|170701111|ref|ZP_02892086.1| protein of unknown function DUF558 [Burkholderia ambifaria IOP40-10] gi|170133972|gb|EDT02325.1| protein of unknown function DUF558 [Burkholderia ambifaria IOP40-10] Length = 262 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 32/260 (12%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 15 AAVPRFFVEAALRADATLTLPADVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDK- 72 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------NRLDYMIQKSVEMGMGAIRPVITR 115 + +Q + D P + +++D++I+K+VE+G+ A+ P+ T Sbjct: 73 ------RNALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTA 126 Query: 116 YT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQ 164 + + R ++ EQC +P + P L D + Sbjct: 127 RGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAMPADGELR 186 Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 ++ + SL A V +LIGPEGG +E+ + F T LSLGPR+L Sbjct: 187 LLLSPRASIPFASLPDAPPAAA---VTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVL 242 Query: 225 RSDTAAVAAMALVQAICGDW 244 R++TA A +A + A G W Sbjct: 243 RTETAGAAVLAALAARWGGW 262 >gi|56963427|ref|YP_175158.1| hypothetical protein ABC1662 [Bacillus clausii KSM-K16] gi|56909670|dbj|BAD64197.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 248 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 110/224 (49%), Gaps = 15/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 +GD ++ V+RM+ GD ++ N L ++S + S++ V + ++T+ Sbjct: 19 TGDDAAHITKVMRMQAGDEVICVNEDGKAVLVQLSQFDPSSVKGTVLNEMDNETELPIRV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 + + K ++L+ ++QK E+G A R ++ + +R++ AAE Sbjct: 79 TVAQGLPKGDKLETIVQKGTELGAYAFAPFSASRSIVKWDEKKGAKKTERLQKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---TCGSENSLEKLHAIAHIPNVAIL 193 Q L +P + P L+ + + H + DE G + +L++ A+ P +++L Sbjct: 139 QAHRLFVPNVAKPVPLKVVAEALTHYDVCIVCDEEEAKQGEKANLKRAFAMLK-PGLSLL 197 Query: 194 I--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + GPEGG EE L + V+ S+GPRI+R++TAA+ +A Sbjct: 198 VIVGPEGGLTREEVALLSAKGAVS-CSIGPRIVRTETAAMYVLA 240 >gi|323702403|ref|ZP_08114068.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans DSM 574] gi|323532709|gb|EGB22583.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans DSM 574] Length = 246 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 21/245 (8%) Query: 7 LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R FVD P IK +G +++ VLRM GD + + +G+ + ++I+ + K Sbjct: 1 MARFFVD-PQDIKGDTAIITGPDVKHISKVLRMGNGDRLTILDGRGLVFTAEITGMTKDE 59 Query: 65 ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVIT 114 + + K + VQ + K ++++ +IQK E+G + A R V+ Sbjct: 60 VTCHLLGPEVAPAEPNLKVTLVQGLP---KGDKMETIIQKCTELGIYQIIPLAAARSVVR 116 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + R + + AA+QC +P + L ++ N V A E Sbjct: 117 LDGKKAAERQQRWQRVAMEAAKQCRRPVIPRVQKLCQLTEVISMIPTNALGVIAWEDEKQ 176 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVA 232 ++ + L + + I IGPEGG+ EE L P VT LGPRILR++TA Sbjct: 177 QSLRQLLQGVTMPEEIYIFIGPEGGFDPEEVARLSQRGWPNVT---LGPRILRTETAGPT 233 Query: 233 AMALV 237 A+ +V Sbjct: 234 ALTMV 238 >gi|320335223|ref|YP_004171934.1| ribosomal RNA small subunit methyltransferase E [Deinococcus maricopensis DSM 21211] gi|319756512|gb|ADV68269.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus maricopensis DSM 21211] Length = 228 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 17/218 (7%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSDVQY 84 ++ +L VLR++ GD I +F+G+ E + +S + G ++ + ++T Q V Sbjct: 19 EWRHL-RVLRLRAGDTIRVFDGRGAEAEATVSALHEGGATLTLGASVEGAAETPQP-VTL 76 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDIL 141 + +K ++L + + + E+G+ I+ + +RY ++R+R + A++Q Sbjct: 77 AIALLKGDKLADVTRAATELGVARIQLLTSRYADVPDIGPAKLERLRRIALEASKQSRRA 136 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 P + P + L D I G+ L H P V ++ GPEGG+ Sbjct: 137 VTPDVLAPIPVTQL--RADGPAFIAH----PGTHARLTD-HLTWDAP-VTVVSGPEGGWT 188 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 E L F TP++LGPRILR++TA +A + + A Sbjct: 189 DAEVTHLERAGF-TPVTLGPRILRAETAPLALLGAIVA 225 >gi|307243293|ref|ZP_07525460.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM 17678] gi|306493311|gb|EFM65297.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM 17678] Length = 258 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 25/239 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 G+ +++ VLR +GD I + + E+L +I + K SI +++ S+ + Sbjct: 21 EGEDVKHISKVLRYDQGDEIEVCDSNKHEYLCRIESIDKTRINLSIVEEIDINRESRVRV 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTIS 133 S Q + P K+ +++ ++QK E G+ I R V+ DR Sbjct: 81 SLYQGL--P-KSTKMEIILQKLTEAGVDEIVLVNTRRSVVNIKGDKADKKFDRWERIIYE 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV--FADE-TCGSENSLEKLHAIAHIPN- 189 AA+QC +P + + E L++ N + + DE + G + +L+ + +I + Sbjct: 138 AAKQCKRGLIPKLRGILSFEEALEDMGKNDINICPYEDEKSLGIKEALQ-TDLVKNIIDK 196 Query: 190 -----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V I IGPEGG+ EE + + + +++GPRI R++TA++ A A+ GD Sbjct: 197 KDEVRVGIFIGPEGGFTQEENDMVKE-AGIASVTMGPRIFRTETASIVATAITLYELGD 254 >gi|325105650|ref|YP_004275304.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145] gi|324974498|gb|ADY53482.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145] Length = 236 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 6/210 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS-DVQY 84 ++ + + VLR+K GD I L +G G +L +I K + + + + K + + Sbjct: 21 EESRHCSKVLRLKIGDRIHLVDGIGGFYLGEIIEDHPKRTKLTIVSKEKDFNKVAFHLHI 80 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R+++ ++K+ E+G+ + PVI +++ +R+ +SA +Q L Sbjct: 81 AIAPTKNIDRIEWFLEKATEIGIQEVTPVICEHSERKDVKTERLEKIMVSAMKQSLKAYL 140 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + P T + L+ + + A C E + ILIGPEG + + Sbjct: 141 PKLNKPQTFKSLISSVGSDVHKYIAH--CIPTEKREIADSFKREEKYLILIGPEGDFSEK 198 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + FV P++LG LR++TAA+ A Sbjct: 199 EVQIALENGFV-PITLGKSRLRTETAALQA 227 >gi|289676397|ref|ZP_06497287.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae FF5] Length = 180 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F + PL + + + Q HY++ VLRM EGD + LF+G E+ + VGK R Sbjct: 3 LSRFFTETPLSL-GEHELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60 Query: 67 FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V+ +S + +S ++ + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL 170 >gi|73856980|gb|AAZ89687.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 253 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143 + ++++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC + Sbjct: 98 RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 157 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P LE D ++ S N+L + V +LIGPEGG ++ Sbjct: 158 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 212 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 213 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 251 >gi|282877983|ref|ZP_06286792.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310] gi|281299984|gb|EFA92344.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310] Length = 241 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK-VEYQSRSQTKQSDVQY 84 ++ + VLR+K GD I L +G+ + + ++ K + V+ + +T + V Sbjct: 21 EEARHAVSVLRLKAGDEIFLMDGEGSFYQANVTLAATKHCMYDIVKALPQQKTWKGHVHL 80 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R+++MI+K E+G I + R+++ +DR+ I+A +Q Sbjct: 81 AIAPTKMMDRMEWMIEKMTEVGFDEITFLDCRFSERKKLRIDRLEKIVIAAMKQSRKAWK 140 Query: 144 PFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P ++P + + F+ + + I ++ L ++ ++ +L+GPEG + Sbjct: 141 PVVHPIMSFQDFVNQQREGGLYIAHCYTEIARKDFLSEIQQANDQQDITMLVGPEGDFSM 200 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +E + F + +SLG LR++TA + ++ + Q + Sbjct: 201 DEVKQALEKGF-SSVSLGQNRLRTETAGLVSIVMSQVV 237 >gi|304403938|ref|ZP_07385600.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus YK9] gi|304346916|gb|EFM12748.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus YK9] Length = 254 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 17/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV +T GD H+ + V+RM+ GD+ ++ +G E ++K + + R Sbjct: 1 MQRYFVPTSQFDETTVTLLGDDAHHASRVMRMRSGDSFIVSDGAGREAIAKATSIAAD-R 59 Query: 67 FK---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-T 117 + VE + + + S K ++++ +IQK E+G A P +I +Y Sbjct: 60 IEADIVEKLAGDREPAWQITIAQSLPKGDKMELIIQKGTEIGAYAFVPFESERMIVQYDA 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R AAEQ +P I P + + L+ + ++F E G S Sbjct: 120 KKEAKRLERWEKIAKEAAEQAHRSRIPAIAKPASWKQLVGSIGEYDLVLFCYEEEGRSGS 179 Query: 178 ----LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + + IA N V +++GPEGG+ E V + LG RILR++TA + Sbjct: 180 GSGLRDAVRPIADRSNARVLVVVGPEGGFTESEAADASGAGAVV-VGLGKRILRTETAGL 238 Query: 232 AAM 234 A+ Sbjct: 239 VAL 241 >gi|113955056|ref|YP_730866.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9311] gi|113882407|gb|ABI47365.1| conserved hypothetical protein TIGR00046 [Synechococcus sp. CC9311] Length = 254 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 10/237 (4%) Query: 5 SHLKRLFVDFPLCIKTQGKAS----GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L+RL ++ G D+ HYL VLR++ G + + +G+ W + Sbjct: 3 AELRRLLIEPKRLADRDGNGCLVLRDDERHYLRRVLRLRSGSPVAVVDGRGHLWEGSLQE 62 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQN 119 G+ + ++ + K + + ++ +D +++ + E+G+ I+P+ R T Sbjct: 63 EGQLL-LPNSCETTTPAKTPQLGLAIALVRRG-MDDVMRMACELGVDCIQPLQAARSTPQ 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 Y +R + A EQC+ L +P + P + + +N + A +LE Sbjct: 121 ADYKPERWQLILKEAVEQCERLWMPRLLPLASTDDWWTMHGNNDTLAIATTRLEELTALE 180 Query: 180 KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + + + IGPEGG+ E+ S + P+SL ILRS TAA+A + Sbjct: 181 PWLRRQTLKDNCIWLAIGPEGGWDPLEQAKALSEGWA-PISLSEDILRSSTAAIAGV 236 >gi|161986456|ref|YP_311922.2| 16S ribosomal RNA methyltransferase RsmE [Shigella sonnei Ss046] Length = 244 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143 + ++++ IQKS+E+G+ I P+ + ++ + + + + I+A EQC + Sbjct: 89 RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 148 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P LE D ++ S N+L + V +LIGPEGG ++ Sbjct: 149 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 203 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 204 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 242 >gi|115350589|ref|YP_772428.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria AMMD] gi|115280577|gb|ABI86094.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia ambifaria AMMD] Length = 255 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 A VLR++ GD + LF+G G++ +++ + K + +Q + D P + Sbjct: 35 AQVLRLQPGDTLALFDGSGGQYRARLVEIDK-------RNALAQIEAFDPAEAEPPYRVT 87 Query: 92 --------NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +++D++I+K+VE+G+ A+ P+ T + + R ++ EQ Sbjct: 88 LAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLSGERADKRVAHWRGVVRASCEQ 147 Query: 138 CDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 C +P + P L D +++ + SL A V + Sbjct: 148 CGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRASIPFASLPDAPPAAA---VTL 204 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 LIGPEGG +E+ + F T LSLGPR+LR++TA A +A + A G W Sbjct: 205 LIGPEGGLSPDEENVARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 255 >gi|281200678|gb|EFA74896.1| hypothetical protein PPL_11930 [Polysphondylium pallidum PN500] Length = 275 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 25/252 (9%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L+R FV+ PL ++ + G Q+ +L LR+KEG + LF+G + ++ I +GK+ Sbjct: 4 LRRFFVENIPLMLRGSVRLDGSQHLHLKKSLRLKEGQEVELFDG-NQSVIAVIDSIGKNH 62 Query: 66 RFKVEYQSRSQTKQSDVQYIF--------SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + T +D Q+ F S K +R D+M++K E+ + ++ + T Y+ Sbjct: 63 SDLIISKINESTSSADNQHTFDSRIDIASSLPKASRGDWMVEKLTELDVRSLYLIETDYS 122 Query: 118 QN------THYNMDRVRTYTISAAEQCDIL-----TLPFIYPPT--TLEFLLKNWDHNCQ 164 ++ T DR + I AA+Q I+ T + PT L L++ + Sbjct: 123 KSSKSSNITDNKFDRYQRIIIEAAKQSKIVKDNLWTHIIVGHPTGQPLPQLIEKF--KTD 180 Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 + + + NS+E L P + +++G EGG+ E L L V P + G IL Sbjct: 181 YIKNNNDNNNNNSVESLSIPKVSPRLLVMVGSEGGFTENEINKLSKLSNVYPTNFGNSIL 240 Query: 225 RSDTAAVAAMAL 236 R +T ++ + + Sbjct: 241 RMETFSLLSAGI 252 >gi|225012984|ref|ZP_03703401.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-2A] gi|225002883|gb|EEG40862.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-2A] Length = 239 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 11/227 (4%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSI- 65 LF D + +KT+ + ++ ++A VLR G+ I + NG EW +++V K+I Sbjct: 3 LFYDALIDLKTKEFTFNKEESKHIAKVLRKSSGETITVTNGSGLEWTGTLTFVSPNKTIA 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + K +Q K+ + +P K N R+++M++K E+G+ +I PV+ +++ Sbjct: 63 QIKKSFQHLE--KKHQIHLAIAPTKNNSRMEWMLEKLTELGIASITPVLCDHSERKIIKK 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R ++ +Q LP I P + + + + QI A C + + Sbjct: 121 ERFEKIIVAGLKQAQHFFLPKINDPMSFSKFIATPEFD-QIFIAH--CEDQPKQRLIDIP 177 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + ++IGPEG + E + P+SLG + R++TA + Sbjct: 178 LSGTQICLMIGPEGDFSPSEINAAIQKEII-PISLGNQRFRTETAGL 223 >gi|150020162|ref|YP_001305516.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho melanesiensis BI429] gi|149792683|gb|ABR30131.1| protein of unknown function DUF558 [Thermosipho melanesiensis BI429] Length = 226 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 17/204 (8%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI-FSPI-KTNR 93 +R+KEGD + +GK GE+L KI + K F +S+ K + F+P K R Sbjct: 27 VRIKEGDIVKSTDGKGGEFLVKIEKIKKKKSFGTILESKYIEKDEKSNLVLFAPSGKWER 86 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI-SAAEQCDILTLPFIYPPTTL 152 L ++I+KSVE+G+ I T+Y+ + + + + I ++A+QC P Sbjct: 87 LRWLIEKSVELGVDKIYITKTKYSNRDYRDKEEKISLVIRNSAKQCIRYHFP------EF 140 Query: 153 EFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 +F+ K + I EN E +H PN + ++GPEGG+ +EK+ L+ Sbjct: 141 KFISFKEIEKYASINTYFLDFEGENIPEIIH-----PNTSFIVGPEGGFSEDEKKFLNVN 195 Query: 212 PFVTPLSLGPRILRSDTAAVAAMA 235 TP+ LG + LR +TAA ++ Sbjct: 196 --FTPVVLGKKTLRFETAAFVFLS 217 >gi|150008444|ref|YP_001303187.1| 16S ribosomal RNA methyltransferase RsmE [Parabacteroides distasonis ATCC 8503] gi|255014179|ref|ZP_05286305.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. 2_1_7] gi|256841572|ref|ZP_05547079.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262383279|ref|ZP_06076415.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298376306|ref|ZP_06986262.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19] gi|149936868|gb|ABR43565.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256737415|gb|EEU50742.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262294177|gb|EEY82109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298267343|gb|EFI09000.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19] Length = 232 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV---- 82 ++ + VLR+ EGD I+L +G+ + + IS E KQ D+ Sbjct: 18 EEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPK---HCEVTLLESWKQPDLWNFN 74 Query: 83 -QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 +P K +R+++ ++K+ E+G+ AI + R+++ R+ +SA +Q Sbjct: 75 LHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIKPIRLEKILVSAMKQSQK 134 Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 TLP + T +F+ +D I +E E L K H N ILIGPEG Sbjct: 135 ATLPALEGMTDFKKFVATPFDGRKFIAHCEE---GEKPLLK-HTYQPGENALILIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + EE + F P+SLG LR++TAA+ A Sbjct: 191 FSPEEIKLAQENGF-EPISLGESRLRTETAALVA 223 >gi|298529346|ref|ZP_07016749.1| protein of unknown function DUF558 [Desulfonatronospira thiodismutans ASO3-1] gi|298510782|gb|EFI34685.1| protein of unknown function DUF558 [Desulfonatronospira thiodismutans ASO3-1] Length = 243 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 36/238 (15%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 P C+++ D+ H+L+ VLR+ G+ I + +G+ G+ F+V SR Sbjct: 14 PYCLES------DEAHHLSRVLRISAGEKIRVLDGR-----------GRLGIFEVRTSSR 56 Query: 75 SQT------------KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + Q+ + K++R ++++K+VE+G+ + + +Q Sbjct: 57 KEAGLFPENIWRVPKPQTRLHLALGWNKSSRRSWLLEKAVELGVWRLVFWTGKNSQGRMD 116 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N Y + T + + P E + + +I ++ C ++ L Sbjct: 117 NASYQNWHKKIVTAAKQSRNPWFPEPVFLSGNVQELVQYARNIPVRIALWEQEC--QDDL 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ P+ + IGPEGG EE + L F P SLGPR+LR +TAA++ + L Sbjct: 175 VSLYQAGPEPDRVVAIGPEGGLTQEELQVLMQAGF-KPASLGPRVLRWETAALSVLCL 231 >gi|134300332|ref|YP_001113828.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum reducens MI-1] gi|134053032|gb|ABO51003.1| protein of unknown function DUF558 [Desulfotomaculum reducens MI-1] Length = 247 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 24/229 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDV 82 +G +++ VLRM+ G+N+ L +G+ +L++I + K + ++ E Q + V Sbjct: 19 NGPDVKHISRVLRMETGNNLTLLDGRGNVYLAQILEINKQEVHCRILEQQEATSEPTVKV 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAE 136 + K ++++ +IQK E+G+ +I R ++ + + R + + AA+ Sbjct: 79 TLVQGLPKGDKMETIIQKCTELGVSSIIPLAAARSIVKLDAKKAAERVQRWQRVAVEAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-------ETCGSENSLEKLHAIAHIP- 188 QC +P +Y +L +WD Q + D E +++ E L P Sbjct: 139 QCRRSGIPEVY-------MLSSWDEILQQIPPDALVLMPWEGERTKSLREVLQTRPMAPG 191 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V I IGPEGG+ EE E + F P++LG RILR++TA AA+ +V Sbjct: 192 QVYIFIGPEGGFEEEEVERVKEKGFY-PVTLGSRILRTETAGPAALTMV 239 >gi|320535676|ref|ZP_08035766.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] gi|320147468|gb|EFW38994.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] Length = 256 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 17/251 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 +K+L V+ + + K SG YHYLA VLR + GD ++L G ++I + Sbjct: 1 MKQLLVNAEVDVDGTVKLSGKDYHYLATVLRKRIGDIVILDLPSCGTVAAEIIDIRAQKK 60 Query: 65 ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---Q 118 ++ K + +Q ++ + I+ ++D +I+++ E+G+ I P+ ++ + Sbjct: 61 ELDLQIKTGLEGLTQPPPFEIVLLQWLIRGQKMDSVIRQATELGVSRIIPIAGEFSLIKE 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETC 172 +R R A +Q + I TL+ LKN + Q ++F ++ Sbjct: 121 ENEKQTERRRRIIKEARQQSGSVIQTEISSVQTLDCALKNLNTAYQKSSIVKLLFTEKK- 179 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S +S+ + V I IG EGG +E L + F+ P+ L ILR++TAA+ Sbjct: 180 -SADSMLHTCLSSRPKTVIIAIGAEGGMSVQEVTGLKNAGFI-PVHLHTNILRAETAAIP 237 Query: 233 AMALVQAICGD 243 A A V I + Sbjct: 238 ACAAVHTILSE 248 >gi|73662489|ref|YP_301270.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495004|dbj|BAE18325.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 250 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 25/247 (10%) Query: 7 LKRLFVDFP------LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 ++R F+D CI QG H++++V+R + D I++ + K+ Sbjct: 1 MQRYFIDQNADVNQRFCITDQGDI-----HHISNVMRHQVDDYIIITFADHYVYKCKLVN 55 Query: 61 VG-KSIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPV 112 +G + I +E + T+ +V IK+++ ++M+QKS E+G +G R V Sbjct: 56 IGAEGIMVSLEERIDVDTELPQNVTICSGLIKSDKYEWMLQKSTELGASEFIAVGMKRSV 115 Query: 113 ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + ++R + AAEQ L +P I TL +LK+ I+ A E Sbjct: 116 VKITENKIAKKLERWQKIIKEAAEQSYRLAIPTIQYQATLNDVLKSTKTYDYILIAYEDA 175 Query: 173 GSENSLEKLHAIAH--IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + + ++ PN V I+ GPEGG +E L + + + LGPRILR++T Sbjct: 176 AKSGEVSQFKSLVQQFKPNDKVLIIFGPEGGLDEDEVSLLQDVGY--QIGLGPRILRAET 233 Query: 229 AAVAAMA 235 A + ++ Sbjct: 234 APLYVLS 240 >gi|301309334|ref|ZP_07215276.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3] gi|300832423|gb|EFK63051.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3] Length = 232 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV---- 82 ++ + VLR+ EGD I+L +G+ + + IS E KQ D+ Sbjct: 18 EEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPK---HCEVTLLESWKQPDLWNFN 74 Query: 83 -QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 +P K +R+++ ++K+ E+G+ AI + R+++ R+ +SA +Q Sbjct: 75 LHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIKPIRLEKILVSAMKQSQK 134 Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 TLP + T +F+ +D I +E E L K H N ILIGPEG Sbjct: 135 ATLPALEGMTDFKKFVATPFDGRKFIAHCEE---GEKPLLK-HTYQPGENALILIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + EE + F P+SLG LR++TAA+ A Sbjct: 191 FSPEEIKLAQENGF-EPISLGESRLRTETAALVA 223 >gi|329904946|ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] gi|327547805|gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 17/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R PL I + H++ V+R++ G + LFNG E+++ +S + K R Sbjct: 1 MPRFHCPLPLAIGDILVLPDNVAHHI-QVIRLQAGSMVTLFNGDGNEYVATLSVLEKK-R 58 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116 VE ++ ++ + ++ Y + + +++D++I+K+VE+G I+P V+ Sbjct: 59 VTVEIKTCTE-RSVELPYAITLAQALPEASKMDWIIEKAVELGAAGIQPLSAQRCVVRLS 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + +SA+EQ L + P + + D + +I+ T ++ Sbjct: 118 AERAEKRQLHWQGIIVSASEQSGRNRLAQLAPVSDFSRWIAQQDIHKRILL---TPRADQ 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 SL V +LIGPEGG S+++E L LS+GPR+LR++TA +AA+A+ Sbjct: 175 SLADWARHQPPQAVTLLIGPEGGL-SDDEENLAIAHGAIALSMGPRVLRTETAGLAALAM 233 Query: 237 VQAICGD 243 + GD Sbjct: 234 LAGAWGD 240 >gi|94970268|ref|YP_592316.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Koribacter versatilis Ellin345] gi|94552318|gb|ABF42242.1| protein of unknown function DUF558 [Candidatus Koribacter versatilis Ellin345] Length = 234 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 12/218 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G +LA VLR + G + G + S + F + + S T + + Sbjct: 19 TGTNAAHLARVLRARVGQQFDISLGTHIRRGTITSIAEDRVEFTLGEELPS-TAITPISL 77 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQCD 139 + K +RL++ I+K E+G+ I PVI R T+ + ++R R + AA+Q Sbjct: 78 YLAVFKFDRLEWAIEKCTELGVAKIIPVIARRTEPHLAASAAKRVERWRRIALEAAQQSR 137 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNVAILIGPEG 198 P I P L+ L+ +IV A+ +N L L A V++ IGPEG Sbjct: 138 RAAPPEITEPVKLKQTLEAVGQ--RIVLAE--TEQQNMLRDVLEASEQSREVSLAIGPEG 193 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 G+ +E + SLGP ILR++TA+++A+A+ Sbjct: 194 GWTDDELTQFDQSGWQRA-SLGPTILRAETASISAVAI 230 >gi|169349834|ref|ZP_02866772.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552] gi|169293402|gb|EDS75535.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552] Length = 246 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 11/240 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D L K +G+ H+L +V+R K G+ I+ + +L + + + + Sbjct: 1 MQRYFIDEDLKDKDCLILTGNDLHHLKNVMRSKNGEKIICIDINGMVYLCVLDDLDQGLI 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----TQNTHY 122 VE + +V +++ K ++ + ++QK+ E+G+ I P+ITR + + Sbjct: 61 KIVEELDENNELDVEVTLVYALPKGDKFELVLQKTTELGVSRIVPLITRRCVVKSDKAKF 120 Query: 123 NMDRVRTYTI--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 + R I A +Q +P I L+ LK + + +V +E ++ Sbjct: 121 SKKLTRYEKILKEATQQSRRNKVPEIVNVIKLDE-LKEYLGDYNLVAYEEKAKNDTDFAL 179 Query: 179 -EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + + I++G EGG+ EE + S+ + SLG RILRS+TA + ++++ Sbjct: 180 KECLKQLNPGDKITIIVGSEGGFDYEEISMMESMN-INACSLGKRILRSETAPLYLLSVI 238 >gi|330815513|ref|YP_004359218.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3] gi|327367906|gb|AEA59262.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3] Length = 253 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 17/252 (6%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 S + R FVD PL + + ++ VLR++ GD + LF+G G++ +++ +GK Sbjct: 7 SAVPRFFVDVPLADQASIVLPAEVARHV-QVLRLEPGDALTLFDGSGGQYRAELVEIGKR 65 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 ++ + +++R + +++D++I+K+VE+G+ + P V+ Sbjct: 66 TAVARTLAFEARELETPYRITLAQGIAGGDKMDWLIEKAVELGVAGVAPLSTSRGVVRLS 125 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETC 172 + + + +A EQC +P + + L L + +++ + Sbjct: 126 GERADKRVAHWQGVVRAACEQCGRNRVPAVAAVSDYAAWLAALPSPVEGEVRLMLSPR-- 183 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + +L A + +LIGPEGG E++ F + LG R+LR++TA +A Sbjct: 184 -ASIAFAELPKQAPTGEIRLLIGPEGGLSPAEEDAARECGF-QAIVLGARVLRTETAGMA 241 Query: 233 AMALVQAICGDW 244 +A + A G W Sbjct: 242 MLAALAARWGGW 253 >gi|163754910|ref|ZP_02162031.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1] gi|161324977|gb|EDP96305.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1] Length = 235 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 10/213 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDV 82 S ++ ++ VLR KE D + + NGK G S I V K+ K++ K + Sbjct: 19 SKEESRHIVRVLRKKEDDILHITNGK-GYIFSAIITVADQKNCMVKIQSFEFQPQKSYKL 77 Query: 83 QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K N R ++ ++K+ E+G+ I P+I +++ +R SA +Q Sbjct: 78 HLAVAPTKMNDRYEWFLEKATEIGIDTITPIICDHSERKVIKAERFEKIIQSATKQSLSA 137 Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P + P + F+ + D I +E + SL++ A+ +V ILIGPEG + Sbjct: 138 YFPKLKPAISFSNFISTHTDEQLFIAHCEE--NEKQSLKE--ALKIQKDVTILIGPEGDF 193 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++E + ++ P++LG LR++TAA+ A Sbjct: 194 STKEIQLALDHNYI-PVTLGETRLRTETAAIVA 225 >gi|194334810|ref|YP_002016670.1| 16S ribosomal RNA methyltransferase RsmE [Prosthecochloris aestuarii DSM 271] gi|194312628|gb|ACF47023.1| protein of unknown function DUF558 [Prosthecochloris aestuarii DSM 271] Length = 245 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 35/250 (14%) Query: 10 LFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 LF P CI + G+++ ++ VLR EG ++ L +G + I + K R Sbjct: 3 LFYTPPECIDLTARTLVVEGEEFFHIVRVLRRTEGQSLHLTDGCGLSINAVIDSIDKG-R 61 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S + ++V S +K+ R D+ ++K+ E+G+ +I P++T T Sbjct: 62 LNASIASFQHIEPPATEVTVAISLLKSAQRFDFFLEKATELGVTSIIPMVTSRTVSQPRG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSEN 176 + ++R + I+A+ Q +LP I P E L + ++ +++ + +C S Sbjct: 122 EKVQRKVERWKKVLIAASIQSKRYSLPDICEPRCFGEVLSEGGSYDERLIPYESSCQS-- 179 Query: 177 SLEKLHAIAHIPNVAI-------LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 P+VA+ +IG EGG+ E + F T +S G ILR++TA Sbjct: 180 -----------PSVALAGRKTLFVIGGEGGFSETEVQQAKDSGF-TEISFGSSILRAETA 227 Query: 230 AVAAMALVQA 239 AV A+A+ +A Sbjct: 228 AVFAVAMARA 237 >gi|163788243|ref|ZP_02182689.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium ALC-1] gi|159876563|gb|EDP70621.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium ALC-1] Length = 234 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 20/216 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWL-------SKISYVGKSIRFKVEYQSRSQTKQ 79 ++ ++ VLR K+GD + + NG WL + I + SI K RS Sbjct: 21 EESRHIVKVLRKKDGDKLHITNGNG--WLFEAELSIADIKHCSVSINSKTLQGKRSY--- 75 Query: 80 SDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138 ++ SP K N R ++ ++K+ E+G+ I P+I +++ +R SA +Q Sbjct: 76 -NLHLAVSPTKMNDRYEWFLEKATEIGIETITPIICDHSERKVVKTERFEKIIQSAMKQS 134 Query: 139 DILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP + P +F+ +++ I +ET + SL+ I+ + ILIGPE Sbjct: 135 LQCYLPKLNAPIAFKDFINEDFSGQKFIAHCEET--DKKSLKS--QISKNKDCTILIGPE 190 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 G + +E E ++ P++LG LR++TAA+ A Sbjct: 191 GDFSVKEIEMALQHNYI-PVTLGETRLRTETAAIVA 225 >gi|115374350|ref|ZP_01461634.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115368660|gb|EAU67611.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 216 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 9/201 (4%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 +LR+ EG ++ +F+G + ++++ V + R + +RS + + + K ++ Sbjct: 1 MLRLSEGASLEVFDGTGRAFEARVAAVDAREARLTL-GAARSTPPRRALSVLQGLPKGDK 59 Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 L++++QK E+G A PV T + + R AA QC +P ++ Sbjct: 60 LEWVLQKGTELGAAAFYPVDTARSVVKLEPKRAGERTLRWEKIVEEAARQCRRNDVPQVH 119 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 PP L + Q++ DE + E A A VA+++GPEGG EE Sbjct: 120 PPAALLDRARALPPGTQLLVLDEEETAVPLGEAFRACAPGAPVALVVGPEGGLTREEVAA 179 Query: 208 LHSLPFVTPLSLGPRILRSDT 228 L +L ++LG ILR++T Sbjct: 180 LRAL-GARGVTLGALILRTET 199 >gi|291458017|ref|ZP_06597407.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419349|gb|EFE93068.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078 str. F0262] Length = 268 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 119/250 (47%), Gaps = 33/250 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G+ +L +VLR + G+ +L+ +G+ ++ +++ +G+ I ++ ++ +D+ Sbjct: 20 GENLRHLKNVLRARPGERVLISDGEGTDYECEVAELGEEEILLRICFREEIHELPADIWL 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 K++++++++QK+VE+G+ I P+ +R T R + +AA+Q Sbjct: 80 FQGLPKSDKMEFILQKAVELGVRGIVPLESRNTVVRLNPGKAAAKRQRWQAIAEAAAKQS 139 Query: 139 DILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL--------------HA 183 +P + P + L D + +++ + G+E + E L A Sbjct: 140 KRSIIPEVMLPMRWKDALSLLPDFSLRLIPYENARGAERTRELLLGLRKPWKEAARPAEA 199 Query: 184 IAHIPN----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 A N +A+ IGPEGG+ SEE+ + LSLG RILR++TAA+ A Sbjct: 200 GAGAENEKKTPDRRRKIAVFIGPEGGF-SEEEIAEARAAGMECLSLGKRILRTETAALCA 258 Query: 234 MALVQAICGD 243 ++L+ D Sbjct: 259 LSLLMLFLED 268 >gi|226324635|ref|ZP_03800153.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758] gi|225207083|gb|EEG89437.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758] Length = 245 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 10/224 (4%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSD 81 + G +++ +VLRMK + + +G+ +L ++ +Y + + + T+ + Sbjct: 17 RIEGGDVNHMKNVLRMKLHEKAEISDGESRTYLCEVEAYEEDVAVLHILEEMEADTEPAS 76 Query: 82 VQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 Y+F + K+++++ ++QK+VE+G+ + PV + + + DR + SA Sbjct: 77 KLYLFQGLPKSDKMELIVQKAVELGVYQVIPVAMKRSVVRLDDKKAAKKADRWNSIAESA 136 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A+Q +P + P + + LK + + ++ + G E + E + I +V I Sbjct: 137 AKQAGRSRIPEVTMPLSYKEALKMAEELDVTLLPYELAGGMEVTREVIRQIKSGQSVGIF 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IGPEGG+ EE + S+ ++LG RILR++TA +A +A++ Sbjct: 197 IGPEGGFEPEEVDAAVSMG-ARVITLGRRILRTETAGLATLAIL 239 >gi|186477349|ref|YP_001858819.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phymatum STM815] gi|184193808|gb|ACC71773.1| protein of unknown function DUF558 [Burkholderia phymatum STM815] Length = 251 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 42/263 (15%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI------S 59 + R FV P KT S D+ + VLR++ GD + LFNG GE+ ++I Sbjct: 6 MPRFFVGTPF--KTDDIVSLPDEVNRHVRVLRLQPGDTVSLFNGDGGEYGAEIVDMDRHG 63 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117 + + + F+ + + + + Q I ++++D++I+K+ E+G P+ T + Sbjct: 64 TIVRIVGFR-DIECEPPYRLTLAQGIAG---SDKMDWLIEKATELGACEFVPLTTTRSVV 119 Query: 118 -------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQI 165 Q + R+ ++ EQC LP + P L L D ++ Sbjct: 120 RLAGERAQRRQVHWQRI---VQASCEQCGRNRLPQVMPTRELATWLSTMPKEPVDGELRL 176 Query: 166 VFADETCGSENSLE----KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + + ++L K+ A+ +L+GPEGG+ + E+ + F T + LGP Sbjct: 177 LLSPRASVPFSALPVEPPKVRAL-------VLVGPEGGFSAAEEAAAAAHGF-TAVGLGP 228 Query: 222 RILRSDTAAVAAMALVQAICGDW 244 R+LR++TA +A ++ + A G W Sbjct: 229 RVLRTETAGIAVLSALAARWGGW 251 >gi|228476013|ref|ZP_04060721.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus hominis SK119] gi|228269836|gb|EEK11316.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus hominis SK119] Length = 250 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 24/225 (10%) Query: 30 HYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----DVQ 83 H++ +V+R G+ I++ FN K ++S+I+ + + ++E +Q DV Sbjct: 25 HHIKNVMRNTVGNKIIINFNDKKV-FISEITNINSN---QIEVLPINQLDIDTELPVDVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 IK ++ ++++QKS E+G +G R V+ +DR + AAEQ Sbjct: 81 ICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQENKVQKKIDRWQKIVKEAAEQ 140 Query: 138 CDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAI 192 L +P + + L+ + + N+D+ I + DE E S K L+ V I Sbjct: 141 SYRLVIPDVKFQSNLKVIYDTINNYDY-VLIAYEDEAKHGEKSRFKNILNNFQTNDRVLI 199 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG+ +E + + + LGPRILR++TA + A++ + Sbjct: 200 IFGPEGGFSDKEIDLFREVSL--NVGLGPRILRAETAPLYALSAI 242 >gi|311747456|ref|ZP_07721241.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1] gi|126574815|gb|EAZ79186.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1] Length = 234 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 18/219 (8%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSD--VQYIF 86 +L VLR +EGD I + +GK + K+ S KSI ++ S + D + Sbjct: 23 HLTRVLRKREGDIIHVTDGKGSIYECKLVDSNPKKSI---LQIISSEKVPADDYYIHLAI 79 Query: 87 SPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 +P K+ +R+++MI+K E+G + + + ++ + +R+ ISA +Q P Sbjct: 80 APTKSPDRMEWMIEKITEIGFHELTLLSSMNSERSFLKTERLHKKMISACKQSLKFHTPK 139 Query: 146 IYPPTTLEFLLKNWD-HNCQ--IVFADETCGSENSLEKLHAIAHI-PNVAILIGPEGGYH 201 I T L+ N D + Q I + D EN L +A N ILIGPEG + Sbjct: 140 INQTTDLKEFFNNSDFEDFQKFIAYVD-----ENHDHHLMDVAKPQANYLILIGPEGDFS 194 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +E E F P+SLG LR++TA +AA+ ++Q + Sbjct: 195 PQEIEKAFEFNF-KPVSLGKSRLRTETAGLAAVQMLQVL 232 >gi|320527295|ref|ZP_08028480.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204] gi|320132319|gb|EFW24864.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204] Length = 247 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 13/238 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F D PL + + + DQ H+ +V+R+ L+++G G + S + Sbjct: 5 MQQYFSDTPLVVGQEYILNKDQAHHAKNVVRLHHETIRLVYDGI-GYFADAYSKGKDFVA 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNT 120 +E R +V I+ + + ++QK+ E+G+ +IR V+ + Sbjct: 64 MVLEKDERINEIGVEVTLAMGLIRKEKFELVLQKACELGVTRIVPFESIRCVVRAKKEKE 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLE 179 R AAEQC +P I P L+ L+K D N V E S++ Sbjct: 124 DKQQARRIDILQEAAEQCKRNWIPEITPIVQLKDLVKYRSDVN---VLPYENAYSKSKF- 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ +V +IGPEGG+ EE E L F ++LG RILR++TAA+ A A++ Sbjct: 180 MTEVLSPGQSVTFVIGPEGGFAPEEVEFLQQNGF-EAITLGKRILRAETAAMYACAVI 236 >gi|314936302|ref|ZP_07843649.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp. hominis C80] gi|313654921|gb|EFS18666.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp. hominis C80] Length = 250 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 24/225 (10%) Query: 30 HYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----DVQ 83 H++ +V+R G+ I++ FN K ++S+I+ + + ++E +Q DV Sbjct: 25 HHIKNVMRNTVGNKIIINFNDKKV-FISEITNINSN---QIEILPINQLDIDTELPVDVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 IK ++ ++++QKS E+G +G R V+ +DR + AAEQ Sbjct: 81 ICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQENKVQKKIDRWQKIVKEAAEQ 140 Query: 138 CDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAI 192 L +P + + L+ + + N+D+ I + DE E S K L+ V I Sbjct: 141 SYRLVIPDVKFQSNLKVIYDTINNYDY-VLIAYEDEAKHGEKSRFKNILNNFQTNDRVLI 199 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG+ +E + + + LGPRILR++TA + A++ + Sbjct: 200 IFGPEGGFSDKEIDLFREVSL--NVGLGPRILRAETAPLYALSAI 242 >gi|146302321|ref|YP_001196912.1| hypothetical protein Fjoh_4594 [Flavobacterium johnsoniae UW101] gi|146156739|gb|ABQ07593.1| protein of unknown function DUF558 [Flavobacterium johnsoniae UW101] Length = 235 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 8/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQY 84 ++ ++ VLR K+ D + + NG+ + ++I+ K I V +S + + Sbjct: 21 EESKHIIKVLRKKDSDILHVTNGQGLLFETEITLASDNKCI-VSVLSIKKSPEPKFRLHL 79 Query: 85 IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K N R ++ ++K+ E+G+ I P+I ++ N++R +SA +Q + + L Sbjct: 80 AVAPTKMNDRFEWFLEKATEIGIQEITPIICDRSERKVINLERFEKIVLSAMKQSNEMFL 139 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + + + +K + Q + E ++ E L + NV +LIGPEG + SE Sbjct: 140 PKLNDAVSFKEFIKQKNQGLQFIAHCEETDKKSLKESLKSNE---NVTLLIGPEGDF-SE 195 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++ L P++LG LR++TAAV A Sbjct: 196 KEIALALENNYKPVTLGNTRLRTETAAVVA 225 >gi|304384219|ref|ZP_07366634.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973] gi|304334720|gb|EFM00998.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973] Length = 246 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIK-T 91 VLR+ GD I L +GK + +++S V +S Q + + +P K T Sbjct: 29 VLRLNVGDEIFLMDGKGVFFRAEVSMTSSKHCSYVIKESMPQCPAWRGHIHLAIAPTKMT 88 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 R+++M +K+ E+G A+ + +Y++ DR+ ISA +Q LP ++P + Sbjct: 89 ERMEWMTEKATEVGFDALTFLHCQYSERKTLRTDRMERIAISAMKQSRKAWLPAVHPLMS 148 Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---------NVAILIGPEGGYHS 202 + + +C F C + +++ I +V +LIGPEG + Sbjct: 149 FKDFIAQ--PHCGRKF---ICHCYDEIDRKDFFTEISREPVDDADCDVCVLIGPEGDFSL 203 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E + FV+ +SLG LR++TA ++A+ + Q Sbjct: 204 DEVKQAIGCGFVS-VSLGQSRLRTETAGLSAVMMAQ 238 >gi|134137877|gb|ABO53620.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia vietnamiensis G4] Length = 262 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 46/267 (17%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD ++LF+G G++ +++ Sbjct: 15 AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQL------ 67 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R+ Q D F P++ +++D++I+K+VE+G+ A+ Sbjct: 68 ----VEIDKRNALAQLDA---FEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120 Query: 110 RPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 P+ T + + R ++ EQC +P + F W Sbjct: 121 VPLTTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPEVA--AVRGF--GAWLDAL 176 Query: 164 QIVFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPL 217 AD S A +P+ V +LIGPEGG +E+ + F T L Sbjct: 177 PAAPADGELRLLLSPRASIPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TAL 235 Query: 218 SLGPRILRSDTAAVAAMALVQAICGDW 244 SLGPR+LR++TA A +A + A G W Sbjct: 236 SLGPRVLRTETAGAAVLAALAARWGGW 262 >gi|332978382|gb|EGK15104.1| 16S rRNA methyltransferase RsmE [Psychrobacter sp. 1501(2011)] Length = 305 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 45/260 (17%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV---EYQSRSQTKQSDV 82 D YH+ VLR K G+ L+F+G G+ + ++ + KS + ++ + + S + Sbjct: 49 DIYHHWCRVLRAKVGEQSLIFDGLGGQSIVELESIDKKSAQVRIVAHDTDDNTTAYYSAI 108 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136 + S + +R+DY IQK+ E+G AI+ + +++ + ++ + +SA E Sbjct: 109 AIVMS--RGDRMDYAIQKATELGATAIQLLTSQHGEVRLKANQVDKKLNHWQQVALSACE 166 Query: 137 QCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADET----------------CGSENS 177 QC + P + P ++E ++ H+ A++T S+ Sbjct: 167 QCGLNRPPLVMSPVSIEQCIQQQGGEPHSDVSYLANDTYYQQYFNQPTLPLVLAVPSQQE 226 Query: 178 LEKLHAIAHI-------------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 ++L A I P ILIG EGG E ++ P LG R+L Sbjct: 227 KQQLDINASIKRHFAQALQTPSKPRFDILIGAEGGLSESEYSQARDSDYL-PWQLGNRVL 285 Query: 225 RSDTAAVAAMALVQAICGDW 244 R++TA V A+A + I ++ Sbjct: 286 RTETAPVVALATLMYISENF 305 >gi|313673214|ref|YP_004051325.1| hypothetical protein Calni_1254 [Calditerrivibrio nitroreducens DSM 19672] gi|312939970|gb|ADR19162.1| protein of unknown function DUF558 [Calditerrivibrio nitroreducens DSM 19672] Length = 233 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 17/229 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64 LKR ++D L + + D YH++ +VLR K GD + N D E Y G +S Sbjct: 5 LKRFYIDKDLTDEIE--IDEDMYHHIKNVLRTKIGDKFIFIN--DSEVGEYQFYFGMKRS 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN- 123 F + + + + ++ D +++K E+G+ + PVIT+ + T N Sbjct: 61 GIFTLNNKKSHEILDYKLNVYLGILQREYFDTVMEKLGEIGVTNVIPVITKRSIQTVNNN 120 Query: 124 -MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R++ I A Q + LP + + + N D+N + E S+N +E Sbjct: 121 TVERIKKLLIKGALQAEHDFLPSLDAVLNISEITPNTDNNFLLY---ERKESKNRME--- 174 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +V+++IGPEGG+ +E E L FV P+S +L+++TAA+ Sbjct: 175 --IGSKSVSLVIGPEGGFEEDEIELLSDKGFV-PVSPIKGVLKAETAAL 220 >gi|302759931|ref|XP_002963388.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii] gi|300168656|gb|EFJ35259.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii] Length = 258 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 11/247 (4%) Query: 3 IHSHLKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + + L R + D P T + G ++ ++ LR+ + + LFNG+ G + +S V Sbjct: 1 MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKALRLGQDQRVELFNGRGGIVTAAVSAV 60 Query: 62 GKSIRFKVEYQSRS------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 +S V + ++ + F+ +K R D+M++K E+G + P+ T Sbjct: 61 RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120 Query: 116 YTQNTHYNMD-RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + N R + ++A +QC L + + L + + T G+ Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRESLNISSLKSQVSGSSHVSLL-ATAGA 179 Query: 175 ENSLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E + + I +++GPEG + EEK L + + P+ LG R LR +TAA+A Sbjct: 180 TEIVEVFNDSSKDIRGGTLIVGPEGDFTEEEKYDLVAAGAM-PVGLGHRRLRVETAAIAM 238 Query: 234 MALVQAI 240 +A V + Sbjct: 239 LATVMMV 245 >gi|325679801|ref|ZP_08159372.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8] gi|324108471|gb|EGC02716.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8] Length = 241 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 21/231 (9%) Query: 26 GDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79 G ++ LRM+ GD + + G+D ++ +I + ++ E Q +T+ Sbjct: 20 GADAVHIGRSLRMRLGDELTVCCEGRD--YICRIDTISDEQCTLTVLSSGEGQGEPKTRL 77 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133 + Q + P K ++LD ++QKSVE+G I PV+T ++ +R+ + Sbjct: 78 TLYQAV--P-KGDKLDTIVQKSVELGAAEIVPVLTARCVSRPDEKSFRKKRERLSRIALE 134 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 AA+QC +P + +L+ K + + E GS S A ++ + Sbjct: 135 AAKQCGRSIVPEVGEMISLDECAKRLGRHETGLICYEKGGSPLS---ETVPADTGDIGVF 191 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 IG EGG+ EE E + + +G RILR +TA +AA+A++ + G+ Sbjct: 192 IGSEGGFDEEEVEKCRA-NGAKVIGMGSRILRCETAPLAAIAIIMNLTGNM 241 >gi|229260084|ref|YP_001118455.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia vietnamiensis G4] Length = 255 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 46/267 (17%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD ++LF+G G++ +++ Sbjct: 8 AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R+ Q D F P++ +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEIDKRNALAQLDA---FEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 P V+ + + R ++ EQC +P + F W Sbjct: 114 VPLTTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPEVA--AVRGF--GAWLDAL 169 Query: 164 QIVFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPL 217 AD S A +P+ V +LIGPEGG +E+ + F T L Sbjct: 170 PAAPADGELRLLLSPRASIPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TAL 228 Query: 218 SLGPRILRSDTAAVAAMALVQAICGDW 244 SLGPR+LR++TA A +A + A G W Sbjct: 229 SLGPRVLRTETAGAAVLAALAARWGGW 255 >gi|220929216|ref|YP_002506125.1| hypothetical protein Ccel_1795 [Clostridium cellulolyticum H10] gi|219999544|gb|ACL76145.1| protein of unknown function DUF558 [Clostridium cellulolyticum H10] Length = 245 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAAEQCDILT 142 K+++++ +IQK VE+G+ I PV+T ++ + R + AA+QC+ Sbjct: 80 KSDKMELIIQKCVELGVWEIVPVMTERCVSRINTDKDAQNKLARWQKIAREAAKQCNRGI 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P I+ P T + ++ V + G +N + + I + +I+IGPEGG Sbjct: 140 IPNIHYPITFKEAVEMASQAELSVIPYEKESAVGLKNVVARYQGIT---SGSIIIGPEGG 196 Query: 200 YHSEEKET-LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + EEKE + V +SLGPRILR++TA + +++L+ GD Sbjct: 197 F--EEKEVKMAEDRGVKKISLGPRILRTETAGMVSLSLMMYELGD 239 >gi|327440958|dbj|BAK17323.1| uncharacterized protein [Solibacillus silvestris StLB046] Length = 247 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 19/246 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD SG+ +++ V+RM G+ I++ + + ++ +I + + +R Sbjct: 1 MQRYFVDTVEKDMDHFIISGENARHISKVMRMTAGEEIIVVHD-NVAYVCEIIELDQDVR 59 Query: 67 FK---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 K S Q D+ K ++L+ + QK+ E+GM A+ R ++ Sbjct: 60 VKKTGTTIPSPEMPVQVDIACGLP--KGDKLELIAQKATELGMHALIPFAAERSIVKWDD 117 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CG 173 + N +R++ + AAEQ +P + P + + L++ + + + ADE Sbjct: 118 KKAKKNQERLQKISQEAAEQSHRTYVPDVVQPISFKQLVQTFSNYDAVYIADEEDAKLAN 177 Query: 174 SENSLEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +KL ++ + P + + GPEGG E T +SLGPRILR++TA + Sbjct: 178 RTTFKQKLQSLNKENTPRILCIFGPEGGISRHESAVFLEAGAQT-MSLGPRILRAETAPL 236 Query: 232 AAMALV 237 A++ + Sbjct: 237 YALSAI 242 >gi|159899629|ref|YP_001545876.1| 16S ribosomal RNA methyltransferase RsmE [Herpetosiphon aurantiacus ATCC 23779] gi|159892668|gb|ABX05748.1| protein of unknown function DUF558 [Herpetosiphon aurantiacus ATCC 23779] Length = 247 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 19/236 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 +T A + H +VLR++ G +I L +G ++++++ + K E Q R + Sbjct: 17 ETLAVAERELLHQWNNVLRLRVGQHIALLDGLGMGYIAELTSLNKR-----EAQGRILQR 71 Query: 79 QS-------DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131 + +V + + R + +QK E+G A P++ +Q R R Sbjct: 72 YAANGEPSINVTLYLALTRGERFEIALQKCTELGATAFVPLLCERSQADVSATKRERWQR 131 Query: 132 I--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 I AAEQ LP ++ T+ L ++ A+ G S + A+ Sbjct: 132 IIREAAEQAGRGRLPSLHEAQTVAQALP--QARGHLLLAE--TGQTLSFKAALALEPRQE 187 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 +AI GPEGG+ E E V+ +SLG RILR++TA +AA+A V W+ Sbjct: 188 LAIWSGPEGGWSDNELEAARQAGLVS-VSLGSRILRAETAPIAALAAVMFQFDQWF 242 >gi|222151476|ref|YP_002560632.1| hypothetical protein MCCL_1229 [Macrococcus caseolyticus JCSC5402] gi|222120601|dbj|BAH17936.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 245 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F+D I + SG D H++ +V+R + GD +++ N + + +I + I Sbjct: 1 MQRYFLDVKSVINETYQISGKDDVHHIKNVMRQQTGDKVIV-NFTNATMICEIIDIQTEI 59 Query: 66 RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K +E V +K ++ ++MIQK+ E+G + P ++ T + Sbjct: 60 TVKPIEDIDILTEMPVSVTIASGLLKNDKYEWMIQKATELGATSFIPFVSERTIVKVDEK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGS- 174 ++R AAEQ +P F+ L L+ +DH ++ +ET S Sbjct: 120 KFQKKVERFTKIVKEAAEQSYRQIVPSIEFVASGKALAKKLEAFDH--VLIAYEETAKSG 177 Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + E L + H V ++ GPEGG E S + LGPRILR++TA + Sbjct: 178 EIKRFTEALQDVKHGDKVCVIFGPEGGLSEAEVAQFGS----KVIGLGPRILRAETAPLY 233 Query: 233 AMA 235 A++ Sbjct: 234 ALS 236 >gi|225024619|ref|ZP_03713811.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC 23834] gi|224942633|gb|EEG23842.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC 23834] Length = 240 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 113/221 (51%), Gaps = 17/221 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQYIFSPIKT 91 VLR++ G ++LF+G+ +++ +G+ + +++++S V I + + Sbjct: 27 QVLRLQAGAPLVLFDGQGQAVAAELLEIGRKQAMARVDKLLTESRESPLAVTLIQAVSAS 86 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145 ++D+ +QK E+G+ I P ++ + + + R + ISA EQC +P Sbjct: 87 EKMDFAVQKGTELGVKRIVPTVSMRSNVRLSGERAEKKVRRWQEIAISACEQCGRNEVPP 146 Query: 146 IYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + P L +L D +++ S + L ++ + + +LIGPEGG +E Sbjct: 147 VAPIVDLAQVLAALPADSGARLLL------SPHGGVPLRSLPPVQSSVLLIGPEGGLTAE 200 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E++ S F + LG R+LR++TAA+AA+A +QA+ GD+ Sbjct: 201 EEDLARSYGFQA-VQLGARVLRTETAALAALAAMQALWGDF 240 >gi|296333298|ref|ZP_06875751.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675197|ref|YP_003866869.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii str. W23] gi|296149496|gb|EFG90392.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413441|gb|ADM38560.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii str. W23] Length = 256 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 +G+ H++ +V+RM EGD I+ + E ++ V K + + + ++ ++ Sbjct: 22 TGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDNVSCLVVEWTDENRELPIKV 81 Query: 84 YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI S + K ++L+++IQK E+G A R V+ + +R AAE Sbjct: 82 YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWAKIAKEAAE 141 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIP---NVAI 192 Q +P + + + LL+ + V A E + + A+ +P ++ I Sbjct: 142 QSYRNEVPQVMDVHSFQQLLQRMQDFDKCVVAYEESSKKGEISAFSAVVRRLPKGSSLLI 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG E E L + P LGPRILR++TA + A++ + Sbjct: 202 VFGPEGGLTEAEVERLTEKDSM-PCGLGPRILRTETAPLYALSAI 245 >gi|293376255|ref|ZP_06622498.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909] gi|325845140|ref|ZP_08168449.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1] gi|292645147|gb|EFF63214.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909] gi|325488805|gb|EGC91205.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1] Length = 248 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 13/229 (5%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 Q + + + H++A V+RM+ G+ I++ N K+ +L+ + + ++ S T+ Sbjct: 15 QVRITDEDAHHIARVMRMEVGERIIVCNEDKECYYLTITAVTPDEVTGEIGEAIESDTEL 74 Query: 80 S-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTI 132 +V K ++ +++IQK+ E G PV + + ++R Sbjct: 75 PIEVTIAQGLPKGDKFEWVIQKATECGATNFMPVSMERCVVKLDAKKEVKKVERWNKIAK 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIP 188 AAEQ +P ++ T + L+ H +FA E + L + L I Sbjct: 135 EAAEQSHRQVVPKVHSVHTFKAFLEQSKHYDVCLFAYEETAKQGELAQLKQTLENIKPGA 194 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L+GPEGG +E + L F P +LGPRILR++TA + A++ + Sbjct: 195 TLLLLVGPEGGVGEKEVDLLIQHGF-KPCALGPRILRTETAPIYALSAI 242 >gi|257068884|ref|YP_003155139.1| hypothetical protein Bfae_17280 [Brachybacterium faecium DSM 4810] gi|256559702|gb|ACU85549.1| conserved hypothetical protein TIGR00046 [Brachybacterium faecium DSM 4810] Length = 262 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 19/236 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDV 82 G++ + A V R+ G+ +LL + + L++++ K +R +E + + + + Sbjct: 28 GEEGRHAAKVARIGVGEQVLLTDAPGRQALAEVTVAKKEALELRL-LEDPTGAVQRLPRL 86 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + R + ++ + E+G I P I R + + R + +A + Sbjct: 87 GLVQALATGGRDEQAVESATELGADRIVPWIARRSVSVWRGEKLRKGRSRWQATVRAAVK 146 Query: 137 QCDILTLPFIYPP-TTLEFLLKNWDHNCQ-----IVFADETCGSENSLEKLHAIAH--IP 188 QC +P + P TT E L + ++ E+ G + E+L + + Sbjct: 147 QCRRPGIPAVDPAVTTTELLAALRERTAAGALVLVLHEQESVGLMSLAEQLRTASEDGLE 206 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG EE LH + L LGP +LRS TA AA+A++ A+ G W Sbjct: 207 EILLVVGPEGGIAPEELTALHETGARSVL-LGPEVLRSSTAGPAALAVLSALVGRW 261 >gi|189347656|ref|YP_001944185.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium limicola DSM 245] gi|189341803|gb|ACD91206.1| protein of unknown function DUF558 [Chlorobium limicola DSM 245] Length = 248 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 14/222 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ-SDVQY 84 GD+YH+L VLR K + I + +G + I+ + KS+ R + + V Sbjct: 22 GDEYHHLVRVLRKKRNECIAVTDGTGTHFDVCITAIEKSVLSGTITAERPVARSATTVTV 81 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 S +K R + ++K+ E+G+ A+ P+IT T + R +T +SAA Q Sbjct: 82 ALSLLKAPPRFELFLEKATELGVSAVIPMITARTVAQPSGDRIAKRLIRWKTIILSAARQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP I P ++ ++ +++ + + + + + N+ LIG E Sbjct: 142 SGRYYLPDIIEPLPFGKVIGLSGYDRKLIPYERSPHTASDVRCTGG-----NLLFLIGGE 196 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 GG+ +EE F T +S G +LR++TA + A+++V+A Sbjct: 197 GGFTAEEVLQARDAGF-TEISFGRSVLRAETAGIFAVSMVRA 237 >gi|238917092|ref|YP_002930609.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750] gi|238872452|gb|ACR72162.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750] Length = 245 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G +++ +VLR KEGD +L+ +G + ++ I+ + IR + + + Sbjct: 20 GSDVNHIKNVLRFKEGDKLLISSGDNVDYECSIASMSDEYIRADILSKDEQGKELPSRII 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ +IQK+VE+G ++ PV + + + ++R +SAA+Q Sbjct: 80 LFQGLPKADKMELIIQKAVELGAYSVVPVAMKRSVVKLDAKKAKAKVERWNGIALSAAKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVAILIGP 196 P + T + L+ +++ E G E + + + I H +V I IGP Sbjct: 140 SKRSIQPEVTEVMTFKQALEYAGKLDKLLLPYECAEGMEKTRKVIEEIGHGESVGIFIGP 199 Query: 197 EGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ SE E +++ + ++LG RILR++TA + ++++ Sbjct: 200 EGGFDRSELDEAVNAGCEI--ITLGKRILRTETAGMMLLSVL 239 >gi|169334045|ref|ZP_02861238.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM 17244] gi|169258762|gb|EDS72728.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM 17244] Length = 249 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 110/214 (51%), Gaps = 13/214 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ LRMKEGDNI + + ++ ++ ++++ K+ + + T+ + ++ + Sbjct: 32 KHIIKSLRMKEGDNITICDKNGYDYECELIIDSENVQGKIISKKENDTEPNVKITLYQAL 91 Query: 90 -KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILT 142 K+++ + ++QK+VE+G+ I P++T ++ ++R AA+Q Sbjct: 92 PKSDKFETIVQKTVELGIYEIVPIMTNRCISRPDKKSMKKKIERYNKIAFEAAKQSGRGI 151 Query: 143 LPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P + T + +K D + +I+F + G EN K ++ ++A ++G EGG+ Sbjct: 152 IPRVRDMITFKEAIKEIKDFDMKILFYEN--GGENL--KDFKYENLNDIAFIVGSEGGFD 207 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + E + VT + LG RILR +TA +AA++ Sbjct: 208 ALEAKYAKENE-VTLMGLGKRILRCETAPIAALS 240 >gi|322507766|gb|ADX03220.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] Length = 191 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVR-----TYTISAAEQCDILTL 143 K +R+DY IQK+ E+G+ I+ + + R Y+ D+ + I+A EQC + + Sbjct: 37 KGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLNLV 96 Query: 144 PFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHI-PNVAILIGPEGGYH 201 P + P +L L + D + V A E E+ +A I P +A+LIGPEGG Sbjct: 97 PEVLAPISLHEWLNSSDLPTSKFVLAPEK-------EQKDVLAGIQPELALLIGPEGGLS 149 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + F+ +G R+LR++TA V A++++ Sbjct: 150 ENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 184 >gi|268609141|ref|ZP_06142868.1| hypothetical protein RflaF_06546 [Ruminococcus flavefaciens FD-1] Length = 240 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 18/224 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFK-VEYQSRSQTKQSDV 82 +G +++ LRMK+G+ I + NG D + S S+ VE + +V Sbjct: 17 TGSDANHIGRSLRMKKGEEITVCCNGIDYNC-TIASITADSVYLDLVEKHPCAAEPDINV 75 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K ++L+Y+IQKSVE+G+ I PV+TR ++ + R+ AA+ Sbjct: 76 TLFQAVPKLDKLEYIIQKSVELGVSRIVPVLTRRCISRPDEKDFAKKLPRLNKIAAEAAK 135 Query: 137 QCDILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 Q +P + P + + +++ D N I+ +E G + + I+ Sbjct: 136 QSGRGMIPEVTPVVSFKQSLAMMEELDRN--ILLYEEQGGRSFGEVDFEGVK---SAGII 190 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IG EGG+ EE E + + V + LG RILR +TA + A++++ Sbjct: 191 IGSEGGFDQEEAEAMVNSGAVR-VWLGKRILRCETAPITALSIL 233 >gi|310779511|ref|YP_003967844.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926] gi|309748834|gb|ADO83496.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926] Length = 237 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 22/215 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD-------V 82 ++L +V RMKEGD + + +G + E+ I + K E + K+SD + Sbjct: 25 NHLKNVFRMKEGDQLRVVDG-EYEYFCTIVILEKK-----EITAEINDKKSDEYSSKIRI 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDIL 141 +K +++D +IQK E+G+ I P +T+ T + T + A +QC + Sbjct: 79 DAALGILKNDKMDLVIQKLTEIGINKIIPTLTKRTIVKLKGKKSKWDTVSKEALKQCQGV 138 Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEG 198 L I P L E ++D +V C ++ + ++ + + LIGPEG Sbjct: 139 KLVEISEPLKLSEIEYSDYD----LVLLPYECAENTRIKDVLNNSEKTLKKILYLIGPEG 194 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 G+ EE L ++LG RILR++TAA+ Sbjct: 195 GFSEEEVAYLQE-NNAKVITLGKRILRAETAAIVV 228 >gi|308069954|ref|YP_003871559.1| hypothetical protein PPE_03203 [Paenibacillus polymyxa E681] gi|305859233|gb|ADM71021.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 254 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ ++ +G+ ++A V+R + GD I++ +G E L + + + Sbjct: 1 MQRYFIPAEQFLEDHVIVAGEDARHIAKVMRGRSGDKIIVSDGVSREALVALDTIEQDHV 60 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + T + VQ S K ++++ ++QK E+G P ++ T + Sbjct: 61 TATIIEPLKMTSEPYVQVTIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P I P T + LL ++ I + E + Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEISAPMTWKELLASFAGYDLICYCYEKEQGKQLR 180 Query: 179 EKLHAIAH------IPNVAILIGPEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAV 231 + + +A +P V +++GPEGG+ E E+L + LG RILR++TA + Sbjct: 181 DVIQPLAEQWASTDMPRVLLVVGPEGGFT--EAESLEAEQAGAQSTGLGRRILRAETAGM 238 Query: 232 AAMALV 237 AA+A + Sbjct: 239 AALACI 244 >gi|86130519|ref|ZP_01049119.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85819194|gb|EAQ40353.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 233 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 11/211 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQY 84 D+ ++ VLR + GD I L NG +G + Y + K+ S + + D + Sbjct: 21 DESKHVIRVLRKQPGDTIYLTNG-NGYLFTAQVYDANPNKCKLSITSHTYQEPRDYKLHL 79 Query: 85 IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K N R ++ ++K+ E+G+ I P++ +++ +R SA +Q L Sbjct: 80 AVAPTKLNDRFEWFLEKATEIGVTEITPLLCDHSERKVIKEERFLKILQSAMKQSLHYHL 139 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + P T + + N N I ++ S E ++ + ILIGPEG + + Sbjct: 140 PKLNPLTPFKDFITNAHSNTFIAHCEDDTKSLLKSE----LSPATDCTILIGPEGDFSTT 195 Query: 204 E-KETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E ++ L +TP+SLG LR++TAA+ A Sbjct: 196 EIQQALQK--NITPVSLGHSRLRTETAAIVA 224 >gi|256828472|ref|YP_003157200.1| hypothetical protein Dbac_0661 [Desulfomicrobium baculatum DSM 4028] gi|256577648|gb|ACU88784.1| protein of unknown function DUF558 [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 26/224 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW-------LSKISYVGKSIRFKVEYQSRSQTK 78 G+++H+L VLR K G+++ LF+G+ G W LSK KS + + + Sbjct: 22 GEEFHHLTRVLRAKAGESVRLFDGR-GRWGIFCIRDLSK-----KSASLQRLSEQTAPAP 75 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYTISAAE 136 + K R ++++K+VE+G + +Q D +AA+ Sbjct: 76 ACPLILAVGWSKGLRRGFLLEKAVELGAAEVWLWQAARSQGEVPQEGKDGWERQLTAAAK 135 Query: 137 QCDILTLP----FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 QC LP F P + + D +++ ++ EN +AH Sbjct: 136 QCGASRLPQIRTFAGPADVISAAV---DLGSKVLCWEQ---EENGFVDPTLLAHRRGSIA 189 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++GPEGG +E + F P+ LGP ILR +TAAV ++L Sbjct: 190 VLGPEGGLERKEADLFREHGF-APVGLGPNILRFETAAVLVLSL 232 >gi|126642376|ref|YP_001085360.1| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978] Length = 157 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVR-----TYTISAAEQCDILTL 143 K +R+DY IQK+ E+G+ I+ + + R Y+ D+ + I+A EQC + + Sbjct: 3 KGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLNLV 62 Query: 144 PFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHI-PNVAILIGPEGGYH 201 P + P +L L + D + V A E E+ +A I P +A+LIGPEGG Sbjct: 63 PEVLAPISLHEWLNSSDLPVSKFVLAPEK-------EQKDVLAGIQPELALLIGPEGGLS 115 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + F+ +G R+LR++TA V A++++ Sbjct: 116 DNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 150 >gi|283781126|ref|YP_003371881.1| hypothetical protein Psta_3357 [Pirellula staleyi DSM 6068] gi|283439579|gb|ADB18021.1| protein of unknown function DUF558 [Pirellula staleyi DSM 6068] Length = 236 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 9/224 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R FVD PL +GD+ +L V+R K GD ++LF+G E + I K + Sbjct: 4 RYFVDKPLAAGI-AIIAGDEARHLVGVMRAKLGDEVVLFDGCGHEADATIEKTAKERVEL 62 Query: 68 KVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNM 124 +VE + + S + + K +R ++++K VE+G A+ P+ T Q + Sbjct: 63 RVETVRDVPREFASQLTLAVALPKGDRQKWLVEKLVELGCDALLPLETDRGVAQPVESAI 122 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R++ + A++Q L I P + + L + Q F G SL++ Sbjct: 123 ERLKRGVLEASKQSGRALLMRIEAPASSDTLFSAATVHNQPCFIAHPGGC--SLDQAWDQ 180 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + N IGPEGG+ E + F +SLGP ILR +T Sbjct: 181 SS-GNALFAIGPEGGFSDREVQLAEQAGF-QKVSLGPTILRIET 222 >gi|52424293|ref|YP_087430.1| hypothetical protein MS0238 [Mannheimia succiniciproducens MBEL55E] gi|52306345|gb|AAU36845.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 243 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 43/244 (17%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 + + + +++ VLRM+ G+ + LF+G + + + I K + ++S + Sbjct: 19 RLTDEAANHVGRVLRMQAGERLELFDGSNHVYTAVILQADKKSVTAEIRDCQLDDRESHL 78 Query: 83 QYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYT 131 + + + R+++ +QKSVE+G+ I P+ +++ +D R Sbjct: 79 KIHLGQVISRGERMEFTVQKSVELGVNVITPL---WSERCGVKLDAERMDKKIQQWQKIA 135 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAI 184 ++A EQC +P I P L+ +W C ++ + KL ++I Sbjct: 136 VAACEQCGRNIVPEIRPMMKLQ----DW------------CAEQDGMLKLNLHPRAKYSI 179 Query: 185 AHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +P+ V +LIG EGG +E F T + LG R+LR++TA++ A+ +Q Sbjct: 180 QTLPDIPAEGVRLLIGSEGGLSPQEIAQTERQGF-TEVLLGKRVLRTETASLVAITALQL 238 Query: 240 ICGD 243 GD Sbjct: 239 CFGD 242 >gi|79319632|ref|NP_001031165.1| methyltransferase [Arabidopsis thaliana] gi|49660073|gb|AAT68327.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gi|332194385|gb|AEE32506.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] Length = 210 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78 + G ++ ++A VLR+K+ D + LFNGK G I + K+ + F + + Q Sbjct: 70 RVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGM 129 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 Q V F +K R D++I+K E+G ++ P++T + N +DR+ + +AA+Q Sbjct: 130 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 189 Query: 138 CDILTLPFIYPPTTLEFLLKNWDH 161 C L + PP LL DH Sbjct: 190 CQRLHQMVLNPPIKFGTLL---DH 210 >gi|253574632|ref|ZP_04851972.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845678|gb|EES73686.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 267 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 17/252 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R FVD + +G+ ++ V+R K GD +++ +G E L++I+ + + Sbjct: 14 MQRYFVDPAQFGDREVTIAGEDARHIGRVMRSKPGDKLIVSDGISREVLAEITIIEPQQV 73 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E + S V S K ++++ +IQK E+G + P ++ T + Sbjct: 74 TAAIIEELAASGEPWFQVTVAQSLPKGDKMETVIQKCTEIGAASFLPFLSERTIVQYDSK 133 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSE 175 + R + AAEQ +P + P + LL KN+D C + + E Sbjct: 134 KEEKRLTRWQKIAKEAAEQAHRSKIPAVELPVKWDKLLVELKNYDLVC-LCYEKEDGRQL 192 Query: 176 NSLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + K P VA+++GPEGG+ E E + V+ + LG RILR++TAA+ Sbjct: 193 RDVLKPFVTGLTPERTVKVAVVVGPEGGFTEAEVEEAEAAGAVS-VGLGRRILRTETAAM 251 Query: 232 AAMALVQAICGD 243 AA+ + G+ Sbjct: 252 AALTCIMYESGE 263 >gi|323445090|gb|EGB01887.1| hypothetical protein AURANDRAFT_35679 [Aureococcus anophagefferens] Length = 188 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 5/127 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSD 81 S Q+ Y+A V+R++EGD + F GEW + G ++ V+ + + Sbjct: 48 SPAQHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDETPR 107 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQCD 139 + F+P++ R +I+K+VE+G + PV T + + + AAEQC+ Sbjct: 108 LDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQCE 167 Query: 140 ILTLPFI 146 L +P + Sbjct: 168 RLRVPVV 174 >gi|171320065|ref|ZP_02909134.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5] gi|171094694|gb|EDT39739.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5] Length = 262 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 21/227 (9%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 A VLR++ GD + LF+G G++ +++ + K R + + +++ Y + + Sbjct: 42 AQVLRLQPGDTLALFDGSGGQYRARLVEIDK--RNALAQIEAFEPAEAEPPYRVTLAQGI 99 Query: 92 ---NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +++D++I+K+VE+G+ A+ P V+ + + R ++ EQC Sbjct: 100 AGGDKMDWVIEKAVELGVAAVVPLSTVRGVVKLSGERADKRVAHWRGVVRASCEQCGRNR 159 Query: 143 LPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 +P + P L + D +++ + SL V +LIGPE Sbjct: 160 VPDVAPVRGFGAWLDSLPPAPADGELRLLLSPRASIPFVSLPDAPPATA---VTLLIGPE 216 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG +E+ + F T LSLGPR+LR++TA A +A + A G W Sbjct: 217 GGLSPDEENAARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 262 >gi|313674581|ref|YP_004052577.1| hypothetical protein Ftrac_0464 [Marivirga tractuosa DSM 4126] gi|312941279|gb|ADR20469.1| protein of unknown function DUF558 [Marivirga tractuosa DSM 4126] Length = 231 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 106/214 (49%), Gaps = 8/214 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85 D+ + VLR ++GD + + +GK + +KI+ K RF++ ++ + Sbjct: 18 DESKHCIKVLRKQQGDELDIIDGKGTFYKAKITDASAKKCRFEIISTTQERKVAFHRHLA 77 Query: 86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K ++++++++K+ EMG+ I + +++ ++R+ ISA +Q P Sbjct: 78 IAPTKNMDKMEWLVEKATEMGIDEISFFQSFHSERKVIKIERLEKKAISAMKQSLKAKKP 137 Query: 145 FIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + + LK D N I + D +N + + ++H + +LIGPEG + E Sbjct: 138 LLNEIIPYKQFLKETDVSNKLIAYVD----FKNKIHMKNELSHQQDTLVLIGPEGDFTPE 193 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E +L +SLG LR++TAA+AA+ L+ Sbjct: 194 EV-SLAIENRYKKVSLGNSRLRTETAALAAVHLM 226 >gi|156742110|ref|YP_001432239.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus castenholzii DSM 13941] gi|156233438|gb|ABU58221.1| protein of unknown function DUF558 [Roseiflexus castenholzii DSM 13941] Length = 257 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 25/243 (10%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQY--HYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + S+ R FVD P T+ D H LA+VLR+ G+ ++L +G+ ++ + Sbjct: 9 VQSNTYRFFVD-PAAFDTERVRLFDPELGHQLANVLRLGRGERVVLLDGEGWQYTVMLET 67 Query: 61 VGK--SIRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 V + ++ +E + + + ++ P I+ R ++ +QK VE+G+ A P + + Sbjct: 68 VDRRGTVNGVIESREVAGGEPRLALTVYLPLIRAERFEWALQKGVELGVAAFVPTVCARS 127 Query: 118 QNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-----EFLLKNWDHNCQIVF-- 167 + + R R AAEQ LP + P T +F L H+ ++ Sbjct: 128 IDAAPDERRLARWRRIIREAAEQSRRGRLPRLAPSLTFNEACTQFTL----HSPALLLWE 183 Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE--TLHSLPFVTPLSLGPRILR 225 D +L L + I GPEGG ++E++ H + V SLGPR LR Sbjct: 184 GDNATPLAGALHALRRDTSPAALGIFSGPEGGLTNDERQWAERHGIMIV---SLGPRTLR 240 Query: 226 SDT 228 ++T Sbjct: 241 AET 243 >gi|160880435|ref|YP_001559403.1| hypothetical protein Cphy_2303 [Clostridium phytofermentans ISDg] gi|160429101|gb|ABX42664.1| protein of unknown function DUF558 [Clostridium phytofermentans ISDg] Length = 246 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 120/242 (49%), Gaps = 17/242 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++R +++ T + G +++ +VLRMK G+ ++ +G+ ++ I+ K +I Sbjct: 1 MQRFYIESTNISDTTIRIEGADVNHIKNVLRMKIGEKLIACDGQGIDYCCIIAEFEKDNI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 + + ++ T+ +F + K ++++ ++QK+VE+G I PV+ + T Sbjct: 61 ILSISERKKTDTELPAKLILFQGLPKKDKMELIVQKAVELGAYEIVPVMMKRTIVKLEDK 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R + AA+Q +P ++ + + +K C + C S Sbjct: 121 KKEQKKLERWQAIAEGAAKQSGRGFIPRVHEIVSYQEAIK-MASECDLSILPYECAS--G 177 Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + A+ + ++ I+IGPEGG+ +E++ L + P++LG RILR++TA + Sbjct: 178 INETRALINQSKGKDSIGIMIGPEGGF-AEDEVDLAKEHGIIPVTLGKRILRTETAGLTI 236 Query: 234 MA 235 ++ Sbjct: 237 LS 238 >gi|89891576|ref|ZP_01203080.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89516123|gb|EAS18786.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 234 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 6/206 (2%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN- 92 VLR GD I + +G+ + I+++ + + T + +P K N Sbjct: 29 VLRKNIGDIINITDGRGNLYHGTINHITSNRCDLDIAFAEAYPTHDYYLHIAIAPTKMND 88 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL 152 R+++ ++K+ EMG+ I P+++++++ N+DR +SA +Q P + T Sbjct: 89 RMEWFLEKATEMGISRITPILSQHSERQKINLDRFNRIIVSAMKQSLQFHKPELDALTNF 148 Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212 E + N + A G +N L+ L I + +LIGPEG + +E E Sbjct: 149 EDFI-NAKNVSDKFIAHCEDGDKNHLKNL--IHKGNSTTVLIGPEGDFTPQEIEMALKND 205 Query: 213 FVTPLSLGPRILRSDTAAVAAMALVQ 238 F P+SLG LR++TA V A + Sbjct: 206 F-KPVSLGSTRLRTETAGVYTAATLN 230 >gi|134267587|gb|ABO67782.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 229 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 15/213 (7%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-YIFSPI-KTNR 93 +RMK GD I + +I + Q + + ++ V+ YI + K + Sbjct: 1 MRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRIYIAQGLPKGEK 60 Query: 94 LDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 + +IQK E+G A R V+ + ++R + AAEQ + LP + Sbjct: 61 WELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAEQAERTLLPIVR 120 Query: 148 PPTTLEFLLKNWDHNCQIVFADET---CGSENSLEKLHAIAHIPNVAIL--IGPEGGYHS 202 P +L+ L+ + +FA E G SL L A P ++L GPEGG+ Sbjct: 121 APLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQ-PGSSLLAVFGPEGGFSR 179 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EE E L F+ P SLGPRILR++TA + +A Sbjct: 180 EEAEQLKQSGFL-PCSLGPRILRTETAPLYLLA 211 >gi|87125782|ref|ZP_01081625.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917] gi|86166591|gb|EAQ67855.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917] Length = 248 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 18/243 (7%) Query: 5 SHLKRLFVD---FPLCIKTQGKASGDQY--HYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 + L+RL + C+ + + + ++ HYL VLR++ GD + + +G+ G W + + Sbjct: 2 AELRRLLIQRSRLEPCLNSDRRLALNEREGHYLRRVLRLRPGDAVAVVDGEGGLWTAGLC 61 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR--LDYMIQKSVEMGMGAIRPVITRY- 116 + ++ + S + + + R +D +++ + E+G+ I+P+ + + Sbjct: 62 SPAE---LALDPMAASDPAPAPSPLLGLAVVGVRRGMDELMRMACELGVDRIQPLRSNWR 118 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 T R + A EQC+ L P + P ++ + A Sbjct: 119 TVQAEERPQRWQLILDEAVEQCERLWQPSLLPCRHVDDWWGELSSDAVKALATTRRDGLP 178 Query: 177 SLEKLHAIAHIPNVA----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 SL++ + P+ A + IGPE G+ ++E+ + + TP+S GP ILR+ TAAV+ Sbjct: 179 SLQQW--LNQQPDQAGMVWVAIGPEAGWTADEERAAEAKGW-TPVSCGPSILRTSTAAVS 235 Query: 233 AMA 235 A+A Sbjct: 236 AVA 238 >gi|168334726|ref|ZP_02692858.1| hypothetical protein Epulo_06900 [Epulopiscium sp. 'N.t. morphotype B'] Length = 256 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 26/225 (11%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEW---LSKIS--YVGKSIRFKVEYQSRSQTKQSDVQ 83 +H++ +V+R K GD +L+ + ++G + +++IS ++ +I VE + D+ Sbjct: 34 FHHIKNVMRAKIGDQLLVGDKENGMYKCFVAEISANFITANI---VEVFAADTEPAVDI- 89 Query: 84 YIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRY-------TQNTHYNMDRVRTYTISAA 135 +F+P IK ++++++IQK+VE+G+ I P+ T++ + ++R SAA Sbjct: 90 VLFAPLIKGDKMEWVIQKAVEIGIAKIIPIYTQHCVVKLESEKKIASKVERWNKIAESAA 149 Query: 136 EQCDI-LTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +Q +T+ P +EF D ++T + +K+ ++ Sbjct: 150 KQSGRGITVAVAEPMKFADAMEFADAALDAIAIPYEKEDT----QTFKKMLRENQFTSLG 205 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 I +GPEGG+ +EE + ++LG RILRS+TA++ A AL Sbjct: 206 IFVGPEGGFAAEEIAIAEKFGAMV-VTLGKRILRSETASIVATAL 249 >gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit methyltransferase E [Pseudonocardia dioxanivorans CB1190] gi|326952950|gb|AEA26647.1| Ribosomal RNA small subunit methyltransferase E [Pseudonocardia dioxanivorans CB1190] Length = 248 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 20/231 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + A V R++ G+ I L +G+ G + + VG+ R V R++ + + Sbjct: 22 GPEGRHAATVRRLRPGEEITLADGRGGLARAVVDTVGRD-RLDVRVLDRAELEPPTPRVT 80 Query: 86 FSP--IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN--MDRVRTYTISAAE 136 + +K R + ++ + E G+ AI P + R+ + + R R SAA+ Sbjct: 81 LAQALVKGERGELAVELATEAGVDAILPWRAARCVVRWEDGARGDRALARWRATVRSAAK 140 Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 Q +P + P + L L +D ++ T G + L A V ++ Sbjct: 141 QARRAWVPEVGAPVSTRELAALCPTFDRAL-VLHESATEGLASGLSGAPA-----EVLLV 194 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG EE L + + LGP +LR+ TAA A+ + A+ W Sbjct: 195 VGPEGGVADEEIAMLTAA-GARAVRLGPEVLRASTAAAVALGAIGALTSRW 244 >gi|40889937|pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein gi|40889938|pdb|1VHK|B Chain B, Crystal Structure Of An Hypothetical Protein gi|40889939|pdb|1VHK|C Chain C, Crystal Structure Of An Hypothetical Protein gi|40889940|pdb|1VHK|D Chain D, Crystal Structure Of An Hypothetical Protein Length = 268 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 13/225 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 +G++ H++ +V R EGD I+ + E ++ V K + + ++ ++ ++ Sbjct: 24 TGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKV 83 Query: 84 YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI S + K ++L+++IQK E+G A R V+ + +R AAE Sbjct: 84 YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAE 143 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVAI 192 Q +P + + + LL+ + V A E + + AI + +P ++ I Sbjct: 144 QSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLI 203 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG E E L VT LGPRILR++TA + A++ + Sbjct: 204 VFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPLYALSAI 247 >gi|210610069|ref|ZP_03288248.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787] gi|210152680|gb|EEA83686.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787] Length = 245 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 112/223 (50%), Gaps = 12/223 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83 G +++ +VLRMK G+ + + +G + ++L +I S + + ++ + + T+ Sbjct: 19 EGLDVNHIKNVLRMKVGEALKVSDGNNRKYLCEIESMTAQQVCVRIVEEQQVDTELPSKI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K+++++ ++QK+VE+G I PV T+ + ++R R S A+ Sbjct: 79 YLFQGLPKSDKMELIVQKAVELGAYEIIPVATKRAVVKLDEKKALKKVERWRGIAESGAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILI 194 Q +P + + + L + I+ + G + + + + I +V I I Sbjct: 139 QSGRNVIPKVTNVMSYKDAL-TYARGLDILLIPYELAEGMKETKQVIEEIKRGQSVGIFI 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ ++E E + ++LG RILR++TA + ++++ Sbjct: 198 GPEGGFETQEVEDAIA-NGARAITLGKRILRTETAGLTTLSIL 239 >gi|15806531|ref|NP_295243.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus radiodurans R1] gi|6459283|gb|AAF11086.1|AE001996_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 242 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 17/222 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQSRSQTKQS 80 G Q HVLR++ G+ + +F+G+ GE ++ +S + + SR Sbjct: 27 GPQETRHLHVLRLRPGERVQVFDGRGGEAVAVLSELDAGHALLHLDPAAAAHSRGAEYPQ 86 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ 137 V + +K ++L +++ + E+G I+ +IT + + + R+R AA Q Sbjct: 87 PVTLAIALLKGDKLADVVRAATELGAARIQLLITAHAEARDIGAQKLVRLRRIAGEAARQ 146 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 + +P + P L L W+ Q++ A GS+ L L + + +L GPE Sbjct: 147 SERRIVPDVLEPVPLTKL--TWE--GQLLTAH--PGSQERLTDL--LTWDAPLTVLSGPE 198 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 GG + E E L + ++LGPRILR++TA +A + + A Sbjct: 199 GGLSTAEVEHL-TRQGARLITLGPRILRAETAPLALLGAMAA 239 >gi|317133522|ref|YP_004092836.1| protein of unknown function DUF558 [Ethanoligenens harbinense YUAN-3] gi|315471501|gb|ADU28105.1| protein of unknown function DUF558 [Ethanoligenens harbinense YUAN-3] Length = 239 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 13/233 (5%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQT 77 +T G +G ++A VLRM+ GD + + + ++L +I S ++ +V + + Sbjct: 11 ETHGCITGADAAHIARVLRMRPGDKLTVCDLAGSDYLCEILSAAPDAVELRVLEKRPTIA 70 Query: 78 KQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNT-HYNMDRVRTY 130 + S +F + K ++++ ++QKSVE+G+ + PV+T R + T R + Sbjct: 71 EPSVHVTLFQGLPKADKMELIVQKSVELGVSRVVPVLTARCVSRPDRATLAKKTARWQKI 130 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 AA+Q LP + + + V E G + L + + Sbjct: 131 AAEAAKQSGRGRLPVVGEAVDFSAAARELAGMERGVLFYEKGGDAH----LGVWNGVREI 186 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + IGPEGG+ EE L V +LGPRILR++TA + ++++ G+ Sbjct: 187 GVCIGPEGGFADEEVALAGEL-GVRVCTLGPRILRTETAPLCVLSVIMYATGN 238 >gi|260438505|ref|ZP_05792321.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM 2876] gi|292809094|gb|EFF68299.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM 2876] Length = 247 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK+ D +++ G + ++L I + I + + + + + Sbjct: 20 GLDVNHIKNVLRMKKDDELMVSGGNNTDYLCSIKEFTDDEIYLSIISANEADRELPCRIH 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 +F + K ++++ +IQK VE+G+ I PV + + + + R + + SAA+Q Sbjct: 80 LFQGLPKGDKMEMIIQKCVELGVNEIIPVAMKRSVVRLDDKKAKSKVARWQLISESAAKQ 139 Query: 138 CDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P I+ + E + D + +++ + G + + E L + +VA+ IGP Sbjct: 140 SGRTIIPCIHEVMSFKEAVNYAKDMDVKLIPYELCEGMKATKEALSGLKSGMDVAVFIGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG EE E L + P+SLG RILR++TA +A MA++ Sbjct: 200 EGGLEVEEVEKAKELGII-PISLGKRILRTETAGLAIMAII 239 >gi|91202795|emb|CAJ72434.1| similar to RNA methyltransferase YggJ [Candidatus Kuenenia stuttgartiensis] Length = 244 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 17/243 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 H R F+ + I ++ G + H++ HV R K+G+ I LF+GK E+ + + ++ Sbjct: 2 HQDRFFIP-NVSIDSEIWIEGKEAHHILHVKRAKQGNKITLFDGKGIEYKAVVVETQRA- 59 Query: 66 RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT 117 R KV +S + + S K D +IQK E+G+ + P+ + Sbjct: 60 RLKVFIESSLVVDREPNVSITIAVSIPKGKFSDILIQKCSELGIHTLTPLHCERSVVAIK 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + +R I +++QC L I +E LK C + C ++ Sbjct: 120 ETSAEKRERWNKIVIESSKQCKRNILTEITTGVAIEDFLKTL---CDYDLSLMPCLRRHA 176 Query: 178 LEKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + P+ + LIGPEGG+ E E + P++LG LR +TAA+A Sbjct: 177 MSLKAVLRERPSAKKIVCLIGPEGGFTDNEIERAVEKGCI-PVTLGSSTLRIETAAIAVS 235 Query: 235 ALV 237 +++ Sbjct: 236 SML 238 >gi|269797946|ref|YP_003311846.1| hypothetical protein Vpar_0885 [Veillonella parvula DSM 2008] gi|269094575|gb|ACZ24566.1| protein of unknown function DUF558 [Veillonella parvula DSM 2008] Length = 243 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R M++ + + + G + GK+ Sbjct: 1 MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGIYQITAEVDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 +EY + + + S +K +L++++QK+ E+ + I V + +Y + Sbjct: 59 QAKLIEYVEENVASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTVNCVAKYDEK 117 Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + AA+QC LP + TL L ++V + G ++ Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRKHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235 L+ LH+ + +V I IGPEGGY +EKE + + +SLG ILR++TAA+ ++A Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 235 Query: 236 LVQ 238 ++Q Sbjct: 236 MIQ 238 >gi|90961798|ref|YP_535714.1| hypothetical protein LSL_0821 [Lactobacillus salivarius UCC118] gi|90820992|gb|ABD99631.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] Length = 243 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62 ++R F D I T+ + + + Y + VLRMK GD L + D E + K+ G Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDTFELVD--DAEVVHKMEITKIEDG 56 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 K+ VE +DV + K ++ D+++QK EMG + Y+ Sbjct: 57 KAKATSVEVIPSDVELPADVTIVCGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWD 116 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173 + + + R++ SAAEQ +P + T LK+ D ++ +IV +E+ Sbjct: 117 KKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172 Query: 174 SENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S + P+ I I GPEGG +E E L + F+ LGPRI+R++TA + Sbjct: 173 KGESGNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231 Query: 233 AMA 235 +A Sbjct: 232 FLA 234 >gi|313888909|ref|ZP_07822569.1| RNA methyltransferase, RsmE family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845082|gb|EFR32483.1| RNA methyltransferase, RsmE family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 229 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 17/209 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 H+L +V+R+K+G+ + +DG + +Y G+ I+ E +++K + F + Sbjct: 22 HHLKNVIRIKDGE-VFQVVFEDG--IFSFAYEGEKIKNLGEVLESNESKVR-LSLFFGIL 77 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVI-----TRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 K N+ + +++ + E+G+ PVI + ++ ++R + SAA+Q +P Sbjct: 78 KNNKSEDVLRHATEIGVSDFYPVIMDRSISDISKKKEKKLERFQKIVESAAKQSKRDVIP 137 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 ++ + +L N+ + + + DE + K A N+ ++IGPEGG E Sbjct: 138 IVHDIIKTDDIL-NFSGDLVLCYEDENKTQLGDITK----ALSNNIGLVIGPEGGISERE 192 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E L + LG RILR++TAA+ A Sbjct: 193 LELLSE---AKKVGLGRRILRAETAAITA 218 >gi|312129649|ref|YP_003996989.1| hypothetical protein Lbys_0890 [Leadbetterella byssophila DSM 17132] gi|311906195|gb|ADQ16636.1| protein of unknown function DUF558 [Leadbetterella byssophila DSM 17132] Length = 234 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 16/212 (7%) Query: 35 VLRMKEGDNILLFNGKDGEWL--SKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKT 91 VLR K GD I + +GK G W S + KS + ++ E + Q ++ SP K Sbjct: 31 VLRKKAGDIIQVTDGKGG-WFTCSIVDAHPKSCKLQILESTFEYEKPQREIYVAISPTKN 89 Query: 92 -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 +R++Y ++KS+E+G+ I PV T +T + N +R + ISA +Q LP IYP Sbjct: 90 GDRIEYFLEKSIEIGISGIIPVKTTHTYPKNINAERWKKIAISAMKQSLKAYLPEIYPYL 149 Query: 151 TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKET 207 +++ L A + G+E+ I +P V I IGPEG + EE Sbjct: 150 SVKDFLTLSKPFPTKFLAHLSEGAED-------IIRVPLSDKVLIWIGPEGDFTEEEINL 202 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 S F ++LG LR++TA V A++++ A Sbjct: 203 ATSSDFQN-VTLGKSRLRTETAGVFAVSILNA 233 >gi|322383638|ref|ZP_08057389.1| 16S ribosomal RNA methyltransferase RsmE-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151850|gb|EFX44793.1| 16S ribosomal RNA methyltransferase RsmE-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 255 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 111/249 (44%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ T + GD H+L V+R + G+ I++ +G E L++I+ V K++ Sbjct: 1 MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R T + +Q S K ++++ +IQK E+G P ++ T + Sbjct: 61 TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + AAEQ +P + + + +L + ++ A E+SL Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVVEGVHSWKQIL---EQAARMDAAWICYEKEDSL 177 Query: 179 EKLHAIAHIP----------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A+ + +++GPEGG+ +E E ++ + LG RILR++T Sbjct: 178 QIRDALFQADALKRNDDKPVRIMLIVGPEGGFTEKEIEQAEESGCLS-IGLGTRILRTET 236 Query: 229 AAVAAMALV 237 AA+ + + Sbjct: 237 AAMVGLTCI 245 >gi|298373262|ref|ZP_06983251.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274 str. F0058] gi|298274314|gb|EFI15866.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274 str. F0058] Length = 232 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-----SYVGKSIRFKV 69 P ++T + YH VLRM+EGD + + +GK + ++I + +IR Sbjct: 7 PNVLETNALTEEESYH-CTKVLRMREGDVVQVTDGKGNMYEAEIVLPDTVHTMLAIR--- 62 Query: 70 EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 S ++ + +P K +R +++++K+VE+G+ I P++ ++++ +R+ Sbjct: 63 SVMSDFGKRRYRLHLAVAPTKNIDRFEWLVEKAVEIGVDRITPLLCQHSERRTVKTERLE 122 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 ++AA+Q +P I P T + + D + V EN + A Sbjct: 123 KIALAAAKQSLKAYIPKIDPITHFAEITAHSDDEQRFVAHCYDMPKENLFD---ACRPRQ 179 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + +LIGPEG + +EE E + F + +SL LR++TA + A Sbjct: 180 STVVLIGPEGDFSTEEVELALTAGFRS-VSLSDSRLRTETAGIVA 223 >gi|332827614|gb|EGK00356.1| hypothetical protein HMPREF9455_03309 [Dysgonomonas gadei ATCC BAA-286] Length = 233 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 7/202 (3%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIKT- 91 VLR KEGD ILL +GK + ++I ++ Q K ++Q F+P K Sbjct: 28 VLRKKEGDEILLTDGKGFFYDAEIMQANPKHCMVNILKTIEQPKGWNFNLQIAFAPTKNI 87 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 +R+++ +K+ E+G+ + P++ R+++ R+ +SA +Q LP + + Sbjct: 88 DRIEWFAEKATEIGIDRLSPILCRHSERKEIKAQRIEKILVSAMKQSQKALLPQLDEMQS 147 Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 +K + + Q A C + + N ILIGPEG + EE + Sbjct: 148 FPAFIKQ-EFDGQKFIAH--CYPQEKVLLKDIYKKGGNALILIGPEGDFSEEEVKMAIDH 204 Query: 212 PFVTPLSLGPRILRSDTAAVAA 233 F + +SLG LR++TAA+ A Sbjct: 205 GFKS-ISLGDSRLRTETAALVA 225 >gi|95929633|ref|ZP_01312375.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] gi|95134330|gb|EAT15987.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] Length = 254 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPF 145 R + ++QK E+G+ I P ++R++ R + A QC LP Sbjct: 97 ERFELVLQKMTEIGVTRIVPFVSRHSTTVEQRDAGQKKSHRWPDVLLRAGRQCRRAQLPE 156 Query: 146 IYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 + E +L +WD +++ +++ + S + A +A+++GPEGG+ Sbjct: 157 LMEVVDFETMLDALADWD--VKLLLSEKN--TAWSFREGIGTAKPDRIAVIVGPEGGFAD 212 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE TL V P+S+G RILR++TAA+ A L Q GD+ Sbjct: 213 EEI-TLAQSRGVVPVSVGRRILRTETAAIVAATLAQFCVGDY 253 >gi|218296339|ref|ZP_03497082.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23] gi|218243133|gb|EED09664.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23] Length = 228 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 16/221 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ +L VLR GD +F+ + E L+++ +G +R+++ + R ++ V+ + Sbjct: 18 EEGRHLVEVLRAGVGDRFTVFD-ESREALAEVVDLGPPVRYRI-LEERRPEREVGVEVVL 75 Query: 87 --SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDIL 141 + +K ++L +++ + E+G I+P+ITR++ + + R++ AA+Q L Sbjct: 76 YVALLKGDKLSEVVRAATELGATKIQPLITRHSVPKEMGEGKLRRLKAIAKEAAKQSGRL 135 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P + PP L K Q + A G+ + ++ N+++ +GPEGG+ Sbjct: 136 RVPEVLPPIPL----KAVPEVEQGLVAH--VGARALVREVLDPNR--NLSLAVGPEGGFA 187 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 EE L F P+SLG RILR++TAA A +A+V A G Sbjct: 188 EEEVALLEERGF-APVSLGRRILRAETAATALLAIVTAGEG 227 >gi|222097756|ref|YP_002531813.1| 16S ribosomal RNA methyltransferase rsme [Bacillus cereus Q1] gi|221241814|gb|ACM14524.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 218 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+ + QK E+G A P ++ + ++R+R AAEQ + Sbjct: 54 KGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEI 113 Query: 144 PFIYPPTTLEFLLK-NWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGG 199 P ++ P + + LL + +++ C + + +E E S + L + + I+ GPEGG Sbjct: 114 PEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGG 173 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EE L FV P SLGPRILR++TA + A++ Sbjct: 174 LAEEEITALREHKFV-PCSLGPRILRTETAPLYALS 208 >gi|218438165|ref|YP_002376494.1| hypothetical protein PCC7424_1175 [Cyanothece sp. PCC 7424] gi|218170893|gb|ACK69626.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7424] Length = 241 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 15/221 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 Q HYL VLR+K G + ++ +G+ W + + + ++ + S + + Sbjct: 22 QQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQL---LDIITTSTELSIKLTLMV 78 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 + K N + +++ E+G+ PVI+ T + ++R R I AAEQ + +P Sbjct: 79 ALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVERWRKIAIEAAEQSEREIIP 138 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAILIGPEGG 199 I+ P L +I C + E H H+ ++ + GPEGG Sbjct: 139 QIFEPINFPTALTKIK---EIETNKYICVTRRE-EVNHLFIHLQKPLLNSLVVATGPEGG 194 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + E +T F P+SLG RILR+ TA V +LV A+ Sbjct: 195 WTNLEVQTAIKAGF-EPVSLGRRILRAVTAPVYIASLVSAV 234 >gi|110004933|emb|CAK99265.1| conserved hypothetical upf0088 protein [Spiroplasma citri] Length = 239 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 24/227 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNIL-LFNGK----DGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 + D + VLR++ I+ ++NG+ E S Y K I+ K+E S Sbjct: 17 AEDDVKQIKQVLRLRNQTQIICIYNGEHYLTTLEVQSPQKYAFKLIK-KLEQNHESPI-- 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133 V+ I I+ + DY++QKS E+G+ I P V+ +N ++R Sbjct: 74 -TVRLIAGLIRNTKWDYLLQKSTELGVNEIIPFQFSRCVVQLKGENNFKKIERWTKICKE 132 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD---ETCGSENSLEKLHAIAHIPNV 190 A EQ +P + + +L+ + + +V + ET + L++ + Sbjct: 133 ATEQSYRNQVPLVNDVESDLKVLQKYQSDVNLVCYEKVVETLSIKQFLQQ-----DFKTI 187 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+IGPEGG+ E L S + P+SLG RILR++TA+VA +A++ Sbjct: 188 TIVIGPEGGFTPNEIAVLSSYHYY-PVSLGQRILRAETASVALLAMI 233 >gi|118586988|ref|ZP_01544420.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163] gi|118432610|gb|EAV39344.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163] Length = 253 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 K K + D +H+L VLR+K+ D + L + +L +++ + F S+ Sbjct: 18 KISKKNNPDVFHHLKDVLRVKDKDLVELVADQSA-YLVQVNEISAMEVFFNRLDKLSKDP 76 Query: 79 QSDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130 + V+ I P+ K++ LD++IQK+ E+G+ I ++T ++ + + R Sbjct: 77 EIPVKTTIVVPLLKSDHLDWLIQKATELGVFKI--ILTNFSYSVVKDTKIEKKLQRYEKI 134 Query: 131 TISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIA-- 185 AAEQ L +P IY +E + DH IV +E+ G +++L K+ +A Sbjct: 135 VKGAAEQSHRLLVPEIIYEKKFIEQAGLS-DHQIGIVAWEESAKSGEKSNLFKMIRLAKR 193 Query: 186 --HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + GPEGG +E + L S F+ LGPRILR++TA Sbjct: 194 DSKFNEIVAVFGPEGGISKKEIKKLESSGFIAA-GLGPRILRAETA 238 >gi|227513276|ref|ZP_03943325.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083477|gb|EEI18789.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus buchneri ATCC 11577] Length = 252 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87 H+L+ VLR + GD + L + +L++I + G+ + ++ + + +V + Sbjct: 24 HHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQVTATIQKELHMDVELPVEVTIVSG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 K N+ + ++QK+ E+G I P+ I ++ Q + + R+ +SAAEQ Sbjct: 84 LSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQKSEKKLKRLNEVALSAAEQSHRNL 143 Query: 143 LPFI-YPPTTLEFLLKNWD--HNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGP 196 +P + Y + E + +D + ++V +E G E++L + L I ++ + GP Sbjct: 144 VPTVSYLHSLYELTKRPFDGPFDVKLVAYEEAAKDGEESNLAQALKDIRPDTSIVAVFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 EGG SEE L +++ LGPRILR++TA Sbjct: 204 EGGISSEEISLLTDQAYISA-GLGPRILRTETA 235 >gi|225027417|ref|ZP_03716609.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353] gi|224955244|gb|EEG36453.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353] Length = 248 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 24 ASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 A +++ +VLRMK+G+ + L K E++ I + I ++++ V Sbjct: 19 ADPQDVNHIRNVLRMKKGEKVSLCCEAKGKEYICSIEEIESDIVKAAIIDINGESRELPV 78 Query: 83 QY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 + +F + K+++++ +IQK+VE+G+ I P+ T+ + + R SA Sbjct: 79 KITLFQGLPKSDKMELIIQKAVELGVAEIVPMATKRAVVKLDAKKAAKKVQRWNEIAKSA 138 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A+Q +P + P + E + + ++ ++ G +S E + + ++ I Sbjct: 139 AKQSKRGLIPEVKPVMSFKEAVEYGKSMDMLLIPYEDAKGIAHSREVVETVKDKKSLGIY 198 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 IGPEGG+ EE+ +L P++LG RILR++TA + ++++ Sbjct: 199 IGPEGGF-PEEEVSLAMKAGAEPVTLGHRILRTETAGMTLLSIL 241 >gi|227524419|ref|ZP_03954468.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088424|gb|EEI23736.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 248 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87 H+L+ VLR + GD + L + +L++I + G+ + ++ + + +V + Sbjct: 24 HHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQVTATIQKELHMDVELPVEVTIVSG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 K N+ + ++QK+ E+G I P+ I ++ Q + + R+ +SAAEQ Sbjct: 84 LSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQKSEKKLKRLNEVALSAAEQSHRNL 143 Query: 143 LPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198 +P + Y + E + +D ++V +E G E++L + L I ++ + GPEG Sbjct: 144 VPTVSYLHSLYELTKRPFD--VKLVAYEEAAKDGEESNLAQALKDIRPDTSIVAVFGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 G SEE L +++ LGPRILR++TA Sbjct: 202 GISSEEISLLTDQAYISA-GLGPRILRTETA 231 >gi|148652720|ref|YP_001279813.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter sp. PRwf-1] gi|148571804|gb|ABQ93863.1| protein of unknown function DUF558 [Psychrobacter sp. PRwf-1] Length = 300 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 110/271 (40%), Gaps = 59/271 (21%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTK--- 78 + + D YH+ VLR K G+ +F+G G+ L ++ + KS K+ +Q ++ Sbjct: 29 RLTDDIYHHWCRVLRAKVGEQSWIFDGLGGQSLVELESIDKKSATVKIIHQDTAENTCNY 88 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTI 132 S + + S + +R+DY IQK+ E+G I+ + +++ + + + + Sbjct: 89 HSTIALVMS--RGDRMDYAIQKATELGATTIQLLTSQHGEVRLKANQVDKKLSHWQQVAL 146 Query: 133 SAAEQCDILTLPFIYPPTTLEFLL------------------------------------ 156 SA+EQC + I P ++E L Sbjct: 147 SASEQCRLNRPTLILSPLSIEQWLQGEMGAVHHMVQHLYDADYYQSYLQQPILPLVLAVP 206 Query: 157 -----KNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + D N QI FA N A +P ILIG EGG E + Sbjct: 207 SQQEQQTLDVNAQITGHFASANIKGANPDS---TAACLPRFDILIGAEGGLSEAEYQLAR 263 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + ++ P LG R+LR++TA V A+A + I Sbjct: 264 NTGYL-PWQLGNRVLRTETAPVVALATLMYI 293 >gi|325284031|ref|YP_004256572.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus proteolyticus MRP] gi|324315840|gb|ADY26955.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus proteolyticus MRP] Length = 236 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 21/223 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSRSQTKQSD 81 +G + +L V+R+ GD +L+F+G+ E ++++ + ++R E +T Q Sbjct: 24 TGGEVRHLG-VMRLGAGDPLLVFDGRGREARAEVTALDGLRATLRLVEELPGTPETPQP- 81 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN-MDRVRTYTISAAEQC 138 V + +K ++L +++ + E+G+ I+ ++T++ ++ N + R+ A++Q Sbjct: 82 VTLAVALLKGDKLADVVRAATELGVARIQLLVTQHADVRDIGANKLARLNRVAAEASKQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAILIGP 196 P + PP L L W+ + + + S LH + V +L GP Sbjct: 142 RRAVTPEVLPPVPLAAL--TWEGQAYVAHPYVHDLLSSH-----LHWDS---PVTLLTGP 191 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EGG+ E E L S + LGPRILR++TA +A + + A Sbjct: 192 EGGFSESEMEALLSR-GAQGVVLGPRILRAETAPLALLGAIAA 233 >gi|314933750|ref|ZP_07841115.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87] gi|313653900|gb|EFS17657.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87] Length = 250 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86 H++ +V+R EGD++++ + +I + + ++E + + + Q+I Sbjct: 25 HHIKNVMRYSEGDSVIVTFLNQTVYKCQIKALNDNY-VELELKDKQNIETELPQHITICS 83 Query: 87 SPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++MIQK+ EMG +G R V+ ++R + AAEQ Sbjct: 84 GLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNESKVAKKLERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAILIGP 196 LT+P IY + L+ + H ++ A E L I V ++ GP Sbjct: 144 LTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGDLSHFKQIIKQFKTQDRVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG S+++ +L S T + LGPRILR++TA + A++ V Sbjct: 204 EGGL-SDKEVSLFS-ENSTLVGLGPRILRAETAPLYALSAV 242 >gi|295134596|ref|YP_003585272.1| RNA methyltransferase [Zunongwangia profunda SM-A87] gi|294982611|gb|ADF53076.1| RNA methyltransferase [Zunongwangia profunda SM-A87] Length = 237 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 13/215 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S ++ ++ VLR EG + + NGK + ++I + I+ V ++ KQ+ Y Sbjct: 19 SREESKHIIKVLRRSEGALLKVTNGKGLLFTAQI--INADIKQCVAKIIDTE-KQAKPNY 75 Query: 85 ----IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 +P K N R ++ ++K+ E+G+ I PVI +++ +DR SA +Q Sbjct: 76 WLHLAVAPTKMNDRYEWFLEKATEIGVDEITPVICEHSERKVVKLDRYERVLQSAMKQSL 135 Query: 140 ILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + P F+ K ++ I ++ + + HA + + ILIGPEG Sbjct: 136 HFRMPKLNEPVDFTAFIEKQFEAEKFIAHCED---DQPRVLLQHAATAVADTLILIGPEG 192 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + EE + F +P+SLG LR++TAA+ A Sbjct: 193 DFSPEEIRLALTNKF-SPVSLGSNRLRTETAAIVA 226 >gi|261367268|ref|ZP_05980151.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM 15176] gi|282570870|gb|EFB76405.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM 15176] Length = 242 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 26/236 (11%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG 62 H + R D Q +G H+LA+V+R + G+ ++L G DG E+ ++ + Sbjct: 3 HRYFTRELAD------GQAALTGSDAHHLANVMRARAGEEVVLC-GPDGLEYTGTVTAIQ 55 Query: 63 KS-IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 + F V + S+ + +F K +LD +I+ SVE+G+ I P +RY Sbjct: 56 PGRVEFSVSEGAPSKAEPDMAVTLFVGYPKQGKLDEIIRHSVELGVHEIIPFFSRYCVAA 115 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---- 172 + +R AA+Q +P + P L+N+D C+ + A + Sbjct: 116 PKKEDAKNERYNRIAAEAAKQAGRAQIPHVAMP------LENFDAVCRALSAYDKSLFFY 169 Query: 173 -GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 G + L +L +A++ G EGG+ +EE +T + LGPRILR + Sbjct: 170 EGGGSPLRELLTPGCAQRLALVTGSEGGFSTEEAAAAAEAGAMT-VGLGPRILRCE 224 >gi|170017331|ref|YP_001728250.1| hypothetical protein LCK_00979 [Leuconostoc citreum KM20] gi|169804188|gb|ACA82806.1| DUF558 domain-containing protein [Leuconostoc citreum KM20] Length = 245 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 23/174 (13%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGM-GAIRPVITRYTQNTHYNMD----RVRTYTISAA 135 ++ + SP+K +R D+ +QK+ E+G+ I + R + H D R + +AA Sbjct: 77 EISVVVSPLKNDRSDWFVQKATELGVHHIIFTNMARTVTDWHKQQDKKQLRFQKIAQAAA 136 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWD------HNCQIVFADETC---GSENSLEKLHAIAH 186 EQ L +P T++F+ +W N +V +E+ S N ++ + H Sbjct: 137 EQAHRLMVP------TVQFI--DWQAMIAQPKNLGLVAWEESARAGESANLVQTIREAPH 188 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +L GPEGG + E L + F++ LGPRILR++TA + A++ + + Sbjct: 189 GAKIVLLFGPEGGLTTSEVTELTTSHFISA-GLGPRILRAETAPLYALSAISVL 241 >gi|288927552|ref|ZP_06421399.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317 str. F0108] gi|288330386|gb|EFC68970.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317 str. F0108] Length = 240 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 105/220 (47%), Gaps = 11/220 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQ 83 ++ + + VLR++ GD + L +G + ++++ V G+ + VE + +T + Sbjct: 20 AEEAAHASRVLRLESGDEVFLIDGTGCFFKAQLTLVTKGRCLYDIVERLPQEKTWNGRIA 79 Query: 84 YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K +R+++ ++K+ E+G+ + +++ + ++R+ ++A +Q Sbjct: 80 VAMAPTKVIDRVEWTLEKATEIGIDEFSLLNCAFSERRNVKLERLDKIVVAAVKQSRKAW 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA----IAHIPNVAILIGPEG 198 P + E +K + + C +E + L+ + V ILIGPEG Sbjct: 140 KPLLNDLQPFENFVKQPRKGAKYI---AHCYAEIDKKDLYGELLQLNGDEEVTILIGPEG 196 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +E S +V P+SLG LR++TAA+AA + Q Sbjct: 197 DFSIDEVRLAMSKGYV-PISLGQSRLRTETAALAATMIAQ 235 >gi|116785897|gb|ABK23900.1| unknown [Picea sitchensis] Length = 301 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 8/211 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 + GD++ ++ LR+ D + LFN + G + V +S V + + V Sbjct: 74 RIEGDEFWHMTKALRLGVQDRVELFNARGGLVEGVVLRVERSSADIVALEEPLLLTPTGV 133 Query: 83 QY----IFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQ 137 Q+ F +K R D++I+K E+G ++ P++T R T + ++R + ++A +Q Sbjct: 134 QWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSTLISGNRVERWQRVMLAAIKQ 193 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L + PT +E +L + + A + +E L + +++GPE Sbjct: 194 CQRLHQMVVKTPTGIESILPRIETSSVSFLA--MAEATPIVEVLPKVDKKDGGLLIVGPE 251 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 G + +E L + P+ LGP LR +T Sbjct: 252 GDFTDKEVRALTEAGAI-PVGLGPCRLRVET 281 >gi|292669689|ref|ZP_06603115.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648486|gb|EFF66458.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 246 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 18/232 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW--LSKISYVGKS 64 ++RLF L + + +G H+LA V+R + GD++++ G DG ++ I+ + Sbjct: 1 MRRLFYAGELAEEI--RITGGDAHHLARVMRAQIGDDVIV-AGADGRAARMTVIAAARDA 57 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-T 117 + + EY ++ + + ++V + +K ++D+++QK+ E+G I P V+ RY Sbjct: 58 VTLALAEYIAQEEARGTEVFLAQALLKGEKMDFVVQKAAELGAAGIYPVKTEHVVVRYDA 117 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WD-HNCQIVFADETCG 173 + R + AA+QC L + P L LL + +D + IVF E Sbjct: 118 KKAAAKTARWQKIADEAAKQCGRSMLMPVAPIRPLPDLLVDARIFDPADTAIVFCYEQEH 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ L I V I +G EGG+ S E + + + P+SLG ILR Sbjct: 178 RQSVRTVLQTI-KARRVVIFVGAEGGFSSAEADMICAAGG-QPVSLGRLILR 227 >gi|255656430|ref|ZP_05401839.1| hypothetical protein CdifQCD-2_12199 [Clostridium difficile QCD-23m63] gi|296450123|ref|ZP_06891884.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08] gi|296878504|ref|ZP_06902509.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07] gi|296260886|gb|EFH07720.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08] gi|296430311|gb|EFH16153.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07] Length = 252 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 22/227 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQ 79 G+ +++ VLR K G+ + + + + E++ +I + KSI KV+ S+ K Sbjct: 21 EGEDVKHISKVLRYKPGEKLEICDKNNNEYICEIVNIDKSIVNLNILEKVDINRESELK- 79 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTIS 133 ++ K +++ ++QK E+G+ I R V + +R Sbjct: 80 --IRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVAKVDDKKEDKKFERWERIIYE 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPN 189 AA+Q +P + T + L++ N + E +E ++ HA+ ++I + Sbjct: 138 AAKQSKRGKIPKLRGVLTFKEALEDMKKNNINICPYE---NERTVPMKHALQNCDSNIDS 194 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 V I IGPEGG+ EE E + +SLGPRILR++TA+V A + Sbjct: 195 VGIFIGPEGGFSEEEIEQIQK-NNCNVVSLGPRILRTETASVVASTI 240 >gi|326693043|ref|ZP_08230048.1| hypothetical protein LargK3_04782 [Leuconostoc argentinum KCTC 3773] Length = 245 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 27/251 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P+ A D + + VLR + G F +D E + Sbjct: 1 MQRYFLKQPIADDLVLTADQDVFKHFGKVLRARVGSQAE-FVSQDQEVVVGEVVAITPTE 59 Query: 67 FKVEYQSR-SQTKQSDVQY--IFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQ 118 ++ SR ++ + VQ I SP+K +R D+ +QK+ E+G+ I + + + Sbjct: 60 MTLKVVSRLTENVELPVQVTVIVSPLKNDRSDWFVQKATELGVHRIIFTTMTRTVADWRK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-----VFADETCG 173 R+ +AAEQ L +P T++FL +W + + A E Sbjct: 120 QQLKKATRLEKIAQAAAEQSHRLMIP------TIDFL--SWSEVLSLPKQAGIVAWEESA 171 Query: 174 SENSLEKL-HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E + L + +P +A++ GPEGG ++E L F P LGPRILR++TA Sbjct: 172 REGEVGTLVQVVKPLPTGAELALVFGPEGGLTADEVAALSEHGF-KPAGLGPRILRAETA 230 Query: 230 AVAAMALVQAI 240 + A++ + + Sbjct: 231 PLYALSAISVL 241 >gi|34541729|ref|NP_906208.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis W83] gi|34398047|gb|AAQ67107.1| conserved hypothetical protein TIGR00046 [Porphyromonas gingivalis W83] Length = 248 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 12/235 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I+ + D+ ++ VLRM+ GD + L +G+ + + I KS V Q Q Sbjct: 11 IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQEPWQ 70 Query: 77 TKQSD-VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 D + +P K + R+++M++K VE+G+ + + + +++ +R+ ISA Sbjct: 71 KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHA--IAHI-PN 189 +Q + P I ++ ++ + I + DE +E + + + H+ + Sbjct: 131 MKQSLKASFPVIQVNIPIQTVIADTPKTAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV---QAIC 241 V ILIGPEG + E E+ F P+SLG LR++TA + A + QA C Sbjct: 191 VLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQWIHTLQACC 244 >gi|294791827|ref|ZP_06756975.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27] gi|294457057|gb|EFG25419.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27] Length = 252 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R M++ + + + G + GK+ Sbjct: 10 MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKSITVTGSDNRCGTYQITAEVDGKA 67 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 +EY + + + S +K +L++++QK+ E+ + I V + +Y + Sbjct: 68 QAKLIEYVEGNLASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 126 Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + AA+QC LP + TL L ++V + G ++ Sbjct: 127 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 186 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235 L+ LH+ + +V I IGPEGGY +EKE + + +SLG ILR++TAA+ ++A Sbjct: 187 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 244 Query: 236 LVQ 238 +++ Sbjct: 245 MIR 247 >gi|298209191|ref|YP_003717370.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus HTCC2559] gi|83849118|gb|EAP86987.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus HTCC2559] Length = 235 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 14/216 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI- 85 D+ ++ VLR K GD + + NGK WL + + + V + + ++S Y+ Sbjct: 21 DESKHIVKVLRKKAGDTLHVTNGKG--WLFTVEIISDNHNKCVGVITEKKYQESQQLYLH 78 Query: 86 --FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K N R+++ ++K+ E+G+ I P++ +++ DR SA +Q L Sbjct: 79 VLIAPTKMNDRMEWFLEKATEIGISEITPILCDHSERKTIKTDRFERVLQSAMKQSLQLH 138 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILIGPEGGY 200 LP + T ++ + V EN ++L I + + ILIGPEG + Sbjct: 139 LPKLNALTPFSEVIGQNIEGQKFV-----AHCENDKKRLPMQNEITSNRLTILIGPEGDF 193 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 EE + ++ P++LG LR++TA + A + Sbjct: 194 SLEEIQQALDYNWL-PVTLGNTRLRTETAGIVATTI 228 >gi|228861774|ref|YP_001710445.2| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis subsp. sepedonicus] Length = 254 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 19/235 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDV 82 +G + + V R++ G+ IL+ +G+ G S S + + +V+ V Sbjct: 24 AGQEARHAVTVSRVRSGEGILVGDGR-GTIASGTVTSAEPQRLELRVDAVEAHPEPSPRV 82 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136 + + K +R + +Q + E+G+ A+ P ++R+ Q DR R AA+ Sbjct: 83 VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAAK 142 Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN------ 189 Q +P + P TT + + ++ D T E L +L A + Sbjct: 143 QSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTA--EARLSRLDLAAADGDADAATD 200 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E E L + P++LG ILR+ TA AA+ALV A G W Sbjct: 201 VLLVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGLGRW 254 >gi|169156681|emb|CAQ01839.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 233 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 19/235 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDV 82 +G + + V R++ G+ IL+ +G+ G S S + + +V+ V Sbjct: 3 AGQEARHAVTVSRVRSGEGILVGDGR-GTIASGTVTSAEPQRLELRVDAVEAHPEPSPRV 61 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136 + + K +R + +Q + E+G+ A+ P ++R+ Q DR R AA+ Sbjct: 62 VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAAK 121 Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN------ 189 Q +P + P TT + + ++ D T E L +L A + Sbjct: 122 QSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTA--EARLSRLDLAAADGDADAATD 179 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E E L + P++LG ILR+ TA AA+ALV A G W Sbjct: 180 VLLVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGLGRW 233 >gi|91214831|ref|ZP_01251804.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC 700755] gi|91187258|gb|EAS73628.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC 700755] Length = 233 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 10/209 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQYI 85 + +++ VLR G++I L NG G I + KVE ++ + K+ + + Sbjct: 22 ESRHISKVLRKSIGESIYLTNGL-GICAEGILISNHPKKCKVEVKTIIEEKKPNFRIHIA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P++ +++ DR +A +Q LP Sbjct: 81 IAPTKANDRFEWFLEKATEIGIDEITPLLCDHSERRKIKADRYEKVLQTAMKQSLKYRLP 140 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + P + L+K+ + +++ E +++ EKL + N+ ILIGPEG + +E Sbjct: 141 LLNPMISFNDLMKSDSDSKKMIAHCE----DDTKEKLSGTVNRDNL-ILIGPEGDFSIDE 195 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + F+ P+SL LR++TA + A Sbjct: 196 IKKAIKHEFL-PISLSEARLRTETAGIVA 223 >gi|187778463|ref|ZP_02994936.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC 15579] gi|187772088|gb|EDU35890.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC 15579] Length = 255 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD+I + N + E+ KI + K S+ Sbjct: 6 KFFVPAENIIDKKAIIDGDDVKHIYKVLRLECGDSININNCQGKEYKGKIESIDKKSVVV 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + + Y++ + K+ ++D ++QKS E+G+ I P+IT + Sbjct: 66 KILEQVKVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEIKTSLKEF 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSL 178 +DR + A +QC +P + P LL+ I+ + E G ++ + Sbjct: 126 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKDMDLIIVPYESKENYGIKSLI 185 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + +I G E + L ++LGPRI R++TA + +++ Sbjct: 186 KNIQYEKENIKNIGIIIGPEGGFEESEIRLLEEIKAQIVTLGPRIFRTETAGIVCASIIS 245 Query: 239 AICGD 243 GD Sbjct: 246 YELGD 250 >gi|260911769|ref|ZP_05918341.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634095|gb|EEX52213.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 240 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 17/223 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQ 83 ++ + + VLR++ GD + L +G + ++++ V KS + VE + +T + Sbjct: 20 AEEAAHASRVLRLESGDEVFLIDGAGCFFKAQLTLVTKSRCLYDIVERLPQEKTWHGRIA 79 Query: 84 YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K +R+++ ++K+ E+G+ + +++ + ++R+ ++A +Q Sbjct: 80 IAMAPTKVIDRVEWTLEKATEIGVDEFSLLNCAFSERRNVKLERLDKIVVAAVKQSRKAW 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-------NSLEKLHAIAHIPNVAILIG 195 P + + E +K + + C +E N L +L+ V ILIG Sbjct: 140 KPLLNDIQSFEHFVKQPRKGVKYI---AHCYAEIDKKDLYNELTQLNCD---EEVTILIG 193 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 PEG + EE S +V+ +SLG LR++TAA+AA + Q Sbjct: 194 PEGDFSIEEVRLAMSQGYVS-VSLGQSRLRTETAALAATMIAQ 235 >gi|309792795|ref|ZP_07687238.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6] gi|308225159|gb|EFO78944.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6] Length = 244 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 9/214 (4%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSP 88 H L VLR+ G I+L +G+ ++ +++ V ++ + +V + D+ + Sbjct: 28 HQLGRVLRLAAGTQIMLLDGQGNQYTLELTGVSRTCVTGRVLSTGPAPDPAYDLTLYVAL 87 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 I+ R ++++QK E+G+ PV +R N + +R + AAEQ LP Sbjct: 88 IRPERFEWVLQKGTELGVRRFVPVHFSRCLPNERTDGRKTERWQRIIREAAEQAWRGRLP 147 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLHAIAHIPNVAILIGPEGGYHSE 203 + P + E GS L E L A + AIL GPEGG + Sbjct: 148 ELAAPLSFAAACTAVAATQYTYILWE--GSAPPLREHLAPSAATASYAILSGPEGGITPD 205 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + + P+SLGP ILR++TA + A A++ Sbjct: 206 EI-ALATQHGIMPVSLGPHILRAETAPIMAAAVL 238 >gi|47504981|gb|AAT33657.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. 'Ames Ancestor'] Length = 218 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+ + QK E+G A P ++ + ++R+R AAEQ + Sbjct: 54 KGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEI 113 Query: 144 PFIYPPTTLEFLLK-NWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGG 199 P ++ P + + LL + +++ C + + +E E S + L + + I+ GPEGG Sbjct: 114 PEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGG 173 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EE L FV P SLGPRILR++TA + A++ Sbjct: 174 LAEEEITVLREHNFV-PCSLGPRILRTETAPLYALS 208 >gi|313608746|gb|EFR84566.1| ribosomal RNA small subunit methyltransferase E [Listeria monocytogenes FSL F2-208] Length = 255 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 15/218 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFITYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L ++ P ++L Sbjct: 140 QSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229 GPEGG EKE LH L+ LGPRILR++TA Sbjct: 200 IFGPEGGI--SEKELLHLQEVNAKLAGLGPRILRTETA 235 >gi|223044376|ref|ZP_03614410.1| protein YqeU [Staphylococcus capitis SK14] gi|222442245|gb|EEE48356.1| protein YqeU [Staphylococcus capitis SK14] Length = 250 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86 H++ +V+R EGD++++ + +I + + ++E + + Q+I Sbjct: 25 HHIKNVMRYSEGDSVIVTFLDQTVYKCQIKALNDNY-VELELKDKQNIDTELPQHITICS 83 Query: 87 SPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++MIQK+ EMG +G R V+ ++R + AAEQ Sbjct: 84 GLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNESKVAKKLERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAILIGP 196 LT+P IY + L+ + H ++ A E L I V ++ GP Sbjct: 144 LTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGDLSHFKQIIKQFKTQDRVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG S+++ +L S T + LGPRILR++TA + A++ V Sbjct: 204 EGGL-SDKEVSLFS-ENSTLVGLGPRILRAETAPLYALSAV 242 >gi|195998640|ref|XP_002109188.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens] gi|190587312|gb|EDV27354.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens] Length = 246 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 13/237 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67 R +++ L + GDQ H++ +V+R++ G+ + + NG++ ++I +Y G I Sbjct: 5 RFYLNSNLVKNGRVALQGDQLHHMKNVMRLRVGETVEIINGRNQLAQARIDAYQGNQIAH 64 Query: 68 KVEYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 Q +Q + + I I++ LD +I+K E+G+ + + + ++ Sbjct: 65 VNIDQVLTQLVLDKPRINLIQPLIRSKGLDLVIEKCTELGVSHFYLYASELGEISQFSSA 124 Query: 126 RVRTYT---ISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFAD--ETCGSENSLE 179 R + T ISA +QC L LP + L L L++ H I F D ++ Sbjct: 125 RCKKLTEIAISAIKQCGRLDLPTLTFADRLHNLKLQSNVH--PICFGDTRHLDNAQVGFT 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +A V I GPE G+ +E L + T + + P ILRS+TA++ AL Sbjct: 183 PQSTLAQCKTVCI--GPEKGFSDKEINYLENQLGATGIKISPFILRSETASITLTAL 237 >gi|167757694|ref|ZP_02429821.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704] gi|167664576|gb|EDS08706.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704] Length = 245 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRSQTKQSDVQ 83 G +++ +VLRM+ G+ + + +G + ++ + G+++ ++ + T+ Sbjct: 20 GSDVNHMKNVLRMRPGEAVAISDGDNLKYRCVVEGYEEGRAV-LAIQQRMPVDTELPCRI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 +F + K ++++ ++QK+VE+G + PV TR + + + R + SAA+ Sbjct: 79 ILFQGLPKQDKMELIVQKAVELGASQVVPVATRRSVVKLDEKKAAKKLQRWQQIAESAAK 138 Query: 137 QCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + + E L K + + ++ + G E + + + +IA +V I IG Sbjct: 139 QAGRGYIPQVSSVLSYQEALEKAGELDVLLIPYELAEGMEEARKVVASIAQGQSVGIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ EE + ++LG RILR++TA +A ++++ Sbjct: 199 PEGGFEKEEVDAAIR-QGAKAITLGRRILRTETAGLAILSIL 239 >gi|255282406|ref|ZP_05346961.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM 14469] gi|255266990|gb|EET60195.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM 14469] Length = 246 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDV 82 +G +++ +VLRM+ G L +G+ + +I+ V K I +E S T+ Sbjct: 19 TGSDVNHIRNVLRMEAGARFTLSDGQSSRLYTCRITSVEKEKIWAAIESVSEEGTELPSR 78 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 ++F + K++++D+++QK+VE+G+ I PV+T+ T + R AA Sbjct: 79 IWLFQGLPKSDKMDWIVQKAVELGVYGIVPVMTKRTVVRLDAKKEKARCARWNAIAEGAA 138 Query: 136 EQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q + +P + P + + L D +++ + G E + IA +VA+ I Sbjct: 139 KQSGRMLVPQVKEPVSFAQALQMAQDMQIRLIPYELAGGMEKTRRIFSQIAPGQSVAVFI 198 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ EE FV ++LG RILR++TA ++A+A++ Sbjct: 199 GPEGGFEEEEVCRAEEAGFVR-VTLGKRILRTETAGLSALAML 240 >gi|290894231|ref|ZP_06557200.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556228|gb|EFD89773.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 255 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 15/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L ++ P ++L Sbjct: 140 QSHRTVIPEVHYAASFKELMFDHVHYDYVITAYEESAREGEDSALASLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVAAMA 235 GPEGG EKE LH L+ LGPRILR++TA + ++ Sbjct: 200 IFGPEGGI--SEKELLHLQEVNAKLAGLGPRILRTETAPLYVLS 241 >gi|302346384|ref|YP_003814682.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC 25845] gi|302150957|gb|ADK97218.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC 25845] Length = 244 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 15/216 (6%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV-----QYIFSP 88 VLR+KEGD + L +G+ + ++++ V K Y + KQ V +P Sbjct: 28 RVLRLKEGDEMFLMDGEGCFYKAEVALVSSK---KCLYTIKETLKQEPVWRGKIHLAIAP 84 Query: 89 IK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 K R+++M +K+ E+G I + ++++ +DR+ ISA +Q P + Sbjct: 85 TKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRVDRIEKIVISAVKQSRKGWKPVVN 144 Query: 148 PPTTLEFLLKNWDHN-----CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P T ++N +N C ++ + + ++ +L+GPEG + Sbjct: 145 PMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQEEQPSSAEDITVLVGPEGDFSI 204 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E F + ++LG LR++TA ++A+ + Q Sbjct: 205 DEVSFALEHGFES-VTLGNSRLRTETAGLSAVMMSQ 239 >gi|23099420|ref|NP_692886.1| hypothetical protein OB1965 [Oceanobacillus iheyensis HTE831] gi|22777649|dbj|BAC13921.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 255 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 21/248 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDG-EWLSKIS--YV 61 ++R FV + + GD H++ V+R + G+ ++ NG+ ++ K+S YV Sbjct: 1 MQRYFVSQENVTENSIRIIGDDVHHIQRVMRAQVGEKLICVSDNGRAALTYIIKLSDDYV 60 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 I +E + + Q I P K ++ D ++QK E+G A P + Sbjct: 61 DVEIEKWLEESNELPVSVTIAQGI--P-KGDKFDLILQKGTELGADAFIPFQAERSVALW 117 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG- 173 + H + R + A+EQ +P ++ L+ +L +FA E Sbjct: 118 NDEKKYHKKVKRFQKILKEASEQSHRNRIPSLHSVMNLKQILDEASAYTVKLFAYEEEAK 177 Query: 174 ----SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S N + L I + + IGPEGG+ +E + L F+ P+ LG RILR++TA Sbjct: 178 TEKMSSNLVNTLQNILSHDKIILCIGPEGGFSIKEADQLRENGFI-PIRLGKRILRTETA 236 Query: 230 AVAAMALV 237 A+ A++ + Sbjct: 237 ALYALSSI 244 >gi|332712271|ref|ZP_08432199.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L] gi|332349077|gb|EGJ28689.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L] Length = 259 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 34/258 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++RL + P + QG D Q HYL VLR+++GD + +G+ G ++S++ G Sbjct: 1 MQRLVIS-PAQRQDQGIVLTDAQQHYLIRVLRLRKGDRFIAMDGEGGWYVSELE--GDLT 57 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 + K+ QT+ V + + K + + + + E+G+ I P+ + T + Sbjct: 58 QAKIVASEHIQTELPKQVTLMAAMPKGSGFEQICLMATELGVTRIVPLKSDRTLLNPSPQ 117 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSL 178 + R R T AAEQ + +P I P ++ + Q+ E C + Sbjct: 118 KLQRWRRITQEAAEQSEREVVPKILEPV-------DFSDSLQLPETREAYRYICVARGKA 170 Query: 179 EKLHAI---------------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 L A P + I GPEGG+ ++E E + F+ +SLG RI Sbjct: 171 PHLLNCLLDLRLGFDTGQTDPAQHPGIVIATGPEGGWTTQELEQATAAGFIA-VSLGSRI 229 Query: 224 LRSDTAAVAAMALVQAIC 241 LR+ TA + ++++V A+ Sbjct: 230 LRAITAPIVSLSIVAAVS 247 >gi|188997402|ref|YP_001931653.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp. YO3AOP1] gi|188932469|gb|ACD67099.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp. YO3AOP1] Length = 236 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 118/237 (49%), Gaps = 29/237 (12%) Query: 22 GKASGD-------QYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS--IRFKVEY 71 G+ GD +Y++ VLR+K+ D ++ N DG +L+K+ V K+ I +E Sbjct: 8 GEKEGDYLVLKDQEYNHAVKVLRIKQND-LIEINTLDGNVYLAKVEDVTKNQLIALPIEK 66 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRV 127 + + Y P + +++D +I+ ++G+ + PVI++ + Q+ +++ Sbjct: 67 IPVKEEEFKITLYQCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDVTKKLEKW 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC----QIVFADETCGSENSLEKLHA 183 + +++ +QC PF P +E +K ++ C ++VF ++ +N ++ L Sbjct: 127 QRIALNSIKQC---KRPF---PLIIEKPIKLYNIKCNDDLKVVFYEKE--QQNKVKMLMN 178 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + ++ IG EGG+ EE E L F+ PLSLG IL+ +TA + + ++ I Sbjct: 179 -NNFKTASVFIGNEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233 >gi|197120677|ref|YP_002132628.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K] gi|196170526|gb|ACG71499.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K] Length = 240 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 15/224 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + HYL VLR+ G + LF+G+ G W + + + + + + + V + Sbjct: 23 EARHYLRDVLRLAPGAAVELFDGRGGAW--EATVLDGFEALALGARRAAPGGGAPVWLLV 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDI 140 + K ++D ++QK+ E+G I P V+ + R R AA QC Sbjct: 81 ALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKGEARAARWRRIAEEAARQCGR 140 Query: 141 LTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +P + P L L VF G + E + A A ++GPEGG Sbjct: 141 ADVPEVRAPAPLGAALAEVPAGFGAFVF---HPGGASLSEAAPSPAG--GYAAVVGPEGG 195 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E+E + SLGPR+LR++TAA+ A+AL+QA GD Sbjct: 196 LTDAEREAC-ARAGARDTSLGPRVLRAETAAIVAVALLQARFGD 238 >gi|269118812|ref|YP_003306989.1| hypothetical protein Sterm_0173 [Sebaldella termitidis ATCC 33386] gi|268612690|gb|ACZ07058.1| protein of unknown function DUF558 [Sebaldella termitidis ATCC 33386] Length = 236 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 12/219 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87 +++ +V R K GD I L +GK E+ + I+ +G K I +V E S + + ++ Sbjct: 26 NHVKNVYRYKTGDTIRLIDGK-FEYKAVIAEIGNKRILLRVTEKHEDSYSLRVELDIALG 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K ++++ +QK E+G+ I P+ T R + ++ T T A +QC + +P I Sbjct: 85 ILKNDKMNMALQKLTEIGINKIIPLKTDRVVVKLSDSKEKWNTVTEEALKQCRGVKIPEI 144 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 TL+ + + +++FA E SEN + LIGPEGG+ EE + Sbjct: 145 ERILTLKDI--EFSAYDKVLFAYENS-SENKPVFTILSGEEKRILYLIGPEGGFTEEETK 201 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 + + +SLG RI R++TAA+ ++ I D Y Sbjct: 202 YIREQGAL-EISLGKRIYRAETAAI----VMGGILADVY 235 >gi|227510269|ref|ZP_03940318.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189921|gb|EEI69988.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 248 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87 H+L+ VLR + GD + L + +L++I + G+ + ++ + + +V + Sbjct: 24 HHLSKVLRAEVGDKVQLVSVTHLVYLAEIGSIDGRQVTATIQKELHMNVELPVEVTIVSG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 K N+ + ++QK+ E+G I P+ I ++ Q + + R+ +SAAEQ Sbjct: 84 LSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQKSEKKLKRLNEVALSAAEQSHRNL 143 Query: 143 LPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198 +P + Y + E + +D ++V +E G E++L + L I ++ + GPEG Sbjct: 144 VPTVSYLHSLYELTKRPFD--VKLVAYEEAAKDGEESNLAQALKDIRPDTSIVAVFGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 G SEE L +++ LGPRILR++TA Sbjct: 202 GISSEEISLLTDQAYISA-GLGPRILRTETA 231 >gi|220915389|ref|YP_002490693.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] gi|219953243|gb|ACL63627.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] Length = 240 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 17/225 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + HYL VLR+ G + LF+G+ G W + + + + + + + V + Sbjct: 23 EARHYLRDVLRLAPGAAVELFDGRGGAW--EATVLDGFEALALGARRAAPGGGAPVWLLV 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDI 140 + K ++D ++QK+ E+G I P V+ + R R AA QC Sbjct: 81 ALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKGEARAARWRRIAEEAARQCGR 140 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEG 198 +P + P L L F G+ L A P A ++GPEG Sbjct: 141 ADVPEVRAPAPLGAALAEVPAGFG-AFVFHPGGA-----ALSEAAPSPAGGYAAVVGPEG 194 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G E+E + SLGPR+LR++TAA+ A+AL+QA GD Sbjct: 195 GLTDAEREAC-ARAGARDTSLGPRVLRAETAAIVAVALLQARFGD 238 >gi|47567876|ref|ZP_00238584.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus G9241] gi|47555553|gb|EAL13896.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus G9241] Length = 218 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 11/150 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+ + QK E+G A P ++ + ++R+R AAEQ + Sbjct: 54 KGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEI 113 Query: 144 PFIYPPTTLEFLLK-NWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGG 199 P ++ P + + LL + +++ C + + +E E S + L + + I+ GPEGG Sbjct: 114 PEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGG 173 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 EE L FV P SLGPRILR++TA Sbjct: 174 LAEEEITALREHKFV-PCSLGPRILRTETA 202 >gi|171920821|ref|ZP_02931998.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188024285|ref|ZP_02996977.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518636|ref|ZP_03004077.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524480|ref|ZP_03004487.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867650|ref|ZP_03079652.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273733|ref|ZP_03206268.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554158|ref|YP_002284700.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551384|ref|ZP_03772330.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903589|gb|EDT49878.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018957|gb|EDU56997.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997757|gb|EDU66854.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659714|gb|EDX53094.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660707|gb|EDX53962.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249761|gb|EDY74542.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541659|gb|ACI59888.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379199|gb|EEH01564.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 234 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 32/222 (14%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY----- 84 H++ +V+RM+ D I++ N ++ + I + + + + +D + Sbjct: 22 HHIKNVMRMRLHDEIIVINETQA-------FIAEIINLEPLHATIIKPYFNDCELSTKID 74 Query: 85 IF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILT 142 +F + IK N ++++QK+ E+G+ +I I + T N T +R+ T A EQ Sbjct: 75 LFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNNRISTIIKEACEQARRNY 134 Query: 143 LPFIYPPTTLEFLLK---NWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 L Y + LLK N+D N + +F ++ ++ +K +A++ Sbjct: 135 LVNYYEQFSFSELLKVLLNYDLILVAYENEKQIFLNDIFKENSTYQK---------IALV 185 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ EE L + V +SL ILRS+TA++ +A Sbjct: 186 IGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227 >gi|49660071|gb|AAT68326.1| hypothetical protein At1g50000 [Arabidopsis thaliana] Length = 168 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 12/162 (7%) Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137 Q V F +K R D++I+K E+G ++ P++T + N +DR+ + +AA+Q Sbjct: 2 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 61 Query: 138 CDILTLPFIYPP----TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 C L + PP T L+ +LK+ C + A+ ++ L +++ A + ++ Sbjct: 62 CQRLHQMVLNPPIKFGTLLDHILKS--KLCLVATAE----AKPLLNAVNSSAKESSGLLI 115 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +GPEG + +E E + T + LGP LR +TA +A +A Sbjct: 116 VGPEGDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLA 156 >gi|255533946|ref|YP_003094318.1| hypothetical protein Phep_4065 [Pedobacter heparinus DSM 2366] gi|255346930|gb|ACU06256.1| protein of unknown function DUF558 [Pedobacter heparinus DSM 2366] Length = 234 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 8/211 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDVQ 83 ++ + VLR+ G + L +G G + ++I+ K ++R +E Q ++ + Sbjct: 19 EESRHCTRVLRLGTGAVVYLIDGIGGLYKAEITGETKRQVNLRI-IEVQKEYHKRRHYLH 77 Query: 84 YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K +RL++ ++K+ E+G+ I PVI ++ DR+ +A +Q Sbjct: 78 IAVAPTKNIDRLEWFLEKATEIGIEEITPVICDRSERKVVKEDRLNKVITAAVKQSLQAY 137 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + P +L LK + + +++ + + + + + ILIGPEG + Sbjct: 138 HPRLNPQISLSAFLKQKNDSLKMIAHCVDAAARQYISDV--VKPAGSYTILIGPEGDFTG 195 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E E + PL+LG LR++TAA+AA Sbjct: 196 QEIEMALQSGY-KPLTLGNTRLRTETAALAA 225 >gi|315645962|ref|ZP_07899083.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453] gi|315278723|gb|EFU42037.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453] Length = 256 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +GD ++ V+R + GD +++ +G E + +I + + F V +S + +Q Sbjct: 19 TGDDARHITKVMRGRLGDKLIVSDGVSREAMVEIESLEAASVFAVVIESMEMRNEPRLQV 78 Query: 85 IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 S K ++++ +IQK E+G + P ++ T + ++R R AAE Sbjct: 79 TIAQSLPKGDKMETVIQKCTEIGAVSFAPFLSERTIVQYDAKKEGKRLERWRKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSE-NSLEKLHAIAHIPN----- 189 Q +P + P + LL + + F ++ GS+ + K +P Sbjct: 139 QAHRNRVPSVEQPLSWRNLLAAFSSYDAVCFCYEKEHGSQLRDVLKPFVEQALPESGSQA 198 Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +++GPEGG+ EE V+ + LG RILR +TA + A+A Sbjct: 199 CLLLVVGPEGGFTEEECRAAEDAGAVS-VGLGRRILRCETAGMTALA 244 >gi|301301218|ref|ZP_07207374.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851217|gb|EFK78945.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 243 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 23/243 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62 ++R F D I T+ + + + Y ++ VLRMK GD L + D E + K+ G Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHVIKVLRMKVGDAFELVD--DAEVVHKMEITKIEDG 56 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 K+ VE S+V K ++ D+++QK EMG I Y+ Sbjct: 57 KAEATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWD 116 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173 + + + R++ SAAEQ +P + T LK+ D ++ +IV +E+ Sbjct: 117 RKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172 Query: 174 SENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S + P+ I I GPEGG +E E L + F+ LGPRI+R++TA + Sbjct: 173 KGESGNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231 Query: 233 AMA 235 +A Sbjct: 232 FLA 234 >gi|188994065|ref|YP_001928317.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis ATCC 33277] gi|188593745|dbj|BAG32720.1| conserved hypothetical protein with DUF558 domain [Porphyromonas gingivalis ATCC 33277] Length = 248 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 9/224 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I+ + D+ ++ VLRM+ GD + L +G+ + + I KS V Q Q Sbjct: 11 IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 70 Query: 77 TKQSD-VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 D + +P K + R+++M++K VE+G+ + + + +++ +R+ ISA Sbjct: 71 KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHA--IAHI-PN 189 +Q + P I ++ ++ + I + DE +E + + + H+ + Sbjct: 131 MKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 V ILIGPEG + E E+ F P+SLG LR++TA + A Sbjct: 191 VLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVA 233 >gi|297588453|ref|ZP_06947096.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297573826|gb|EFH92547.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 241 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 30/234 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 G+ Y+++ + LR+ +GD I G D ++++I + I K+ + ++QY Sbjct: 20 GEDYNHIKNSLRLTKGDLIHQVIG-DTTFVTEIEDITPDEIICKI-------IDEDNIQY 71 Query: 85 IFSPI---------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129 SP+ K+++ +Y+IQK+ E+G+ I R V+ + +R Sbjct: 72 -ESPLNITLYQCILKSDKNEYIIQKATELGVNRIVFVETERTVVKLDEKKWIKKKNRFEK 130 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 + +++Q +P I + + + + + +ET S + L ++ + Sbjct: 131 IALESSKQSKRTFIPEIEGLININKISTQNNFLNLVFYENET----ESFQSLLTNSNNKD 186 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + I IGPEGG E + L S F + +SLG RILR+DTA + A++++Q GD Sbjct: 187 INIFIGPEGGLSEENLQVLKSKGFKS-VSLGNRILRADTAPICALSIIQYELGD 239 >gi|282850175|ref|ZP_06259554.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745] gi|282579668|gb|EFB85072.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745] Length = 243 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R M++ + + + G + GK+ Sbjct: 1 MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEVDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 +EY + + + S +K +L++++QK+ E+ + I V + +Y + Sbjct: 59 QAKLIEYVEGNLASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 117 Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + AA+QC LP + TL L ++V + G ++ Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235 L+ LH+ + +V I IGPEGGY +EKE + + +SLG ILR++TAA+ ++A Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 235 Query: 236 LVQ 238 +++ Sbjct: 236 MIR 238 >gi|33865690|ref|NP_897249.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH 8102] gi|33632860|emb|CAE07671.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 242 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + HYL VLR + GD I + +G W +++ ++R V + + S Sbjct: 30 EQHYLRRVLRCRVGDTIDVVDGCGSLWQAQL-ISADALRVSVPADQIEPVRVPRLGLGLS 88 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 I+ + ++ + E+G+ I+P+ R T + +R T A EQC+ L LP + Sbjct: 89 LIRRG-FEDALRMACELGVDEIQPLRADRSTPQAEHRPERWATILQEAVEQCERLWLPTL 147 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPN-VAILIGPEGGYHSE 203 P L W ++ V T ++ + L+ + V +L+GPEGG+ + Sbjct: 148 KPACK----LAQWPNSSDPVAVGVTRRADTPALRDWLNQTTNCNGMVWLLVGPEGGWSNA 203 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQ 238 E E L P+ LG ILRS TAAV ++ LVQ Sbjct: 204 E-EQLSITREWQPVHLGSSILRSSTAAVRGSVELVQ 238 >gi|93006276|ref|YP_580713.1| hypothetical protein Pcryo_1450 [Psychrobacter cryohalolentis K5] gi|92393954|gb|ABE75229.1| protein of unknown function DUF558 [Psychrobacter cryohalolentis K5] Length = 299 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 47/254 (18%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 H+ VLR GD +LF+G GE+ +I + K S T + IF+ I Sbjct: 44 HHWCRVLRANIGDKGILFDGFGGEYQVQILTISKK---NATVTLLSHTNNDNSAPIFTKI 100 Query: 90 -----KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQC 138 + R+DY IQKS E+G+ AI+ + + + + + + I+A EQC Sbjct: 101 GLVMSRGERMDYAIQKSTELGVTAIQLLSSHHGEVNLKPAQVEKKLAHWQQVAIAACEQC 160 Query: 139 ---------------DILTLPFIYPPTTLEFLLKNW---------------DHNCQIVFA 168 D L P +E + + + ++ + Sbjct: 161 GLNRPPLIIAPIPINDWLKPITTTTPVKIEATISSMVTTLSQDAYYQVLQQPADLRLQLS 220 Query: 169 DETCGSENSLEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 G + L ++ +P + +LIGPEGG + E + F P +G R+LR+ Sbjct: 221 VPAAGQPAMPDSLLSVLQQPVPYIELLIGPEGGLSANECAQAADVGF-EPWQIGTRVLRT 279 Query: 227 DTAAVAAMALVQAI 240 +TA V A+A +QA+ Sbjct: 280 ETAPVVALATLQAL 293 >gi|237737740|ref|ZP_04568221.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419620|gb|EEO34667.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 237 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 15/216 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE--YQSRSQTKQSD 81 GD H L +V R+K + + +G + E+L +++ + K S+ ++ ++ R TK Sbjct: 21 KGDVNH-LKNVFRVKIDEKVRAVDG-EKEYLCRVAELDKKSVTLVIDEIFEDRFSTKVK- 77 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDI 140 + +K +++D IQK E+G+ I P+ T R D+ A +QC Sbjct: 78 IDAAIGILKNDKMDLTIQKLTEIGINKIIPLSTKRGVAKVSEKKDKWDLIVREALKQCQG 137 Query: 141 LTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPE 197 + I T +E L L+++D +V C E +L+ L + +V ++GPE Sbjct: 138 VKPLIIDEVTKIEKLKLEDYD----LVIVPYECEDEYTLKNLLRKQTKELKSVLYIVGPE 193 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GG+ EE E L ++LG RILR++TA++ Sbjct: 194 GGFDIEEIEYLKQ-KGANIVTLGKRILRAETASIVV 228 >gi|294793688|ref|ZP_06758825.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44] gi|294455258|gb|EFG23630.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44] Length = 252 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R M++ + + + G + GK+ Sbjct: 10 MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEVDGKA 67 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 +EY + + + S +K +L++++QK+ E+ + I V + +Y + Sbjct: 68 QAKLIEYVEGNLASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 126 Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + AA+QC LP + TL L ++V + G ++ Sbjct: 127 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 186 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235 L+ LH+ + +V I IGPEGGY +EKE + + +SLG ILR++TAA+ ++A Sbjct: 187 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 244 Query: 236 LVQ 238 +++ Sbjct: 245 MIR 247 >gi|87302174|ref|ZP_01084999.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701] gi|87283099|gb|EAQ75055.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701] Length = 261 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 19/247 (7%) Query: 6 HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L+RL + L T + ++ YL+ VLR G+ + +G W S + G Sbjct: 4 ELRRLLIAPERLAAGTTLALAPEESRYLSRVLRYGPGERFAVVDGWGQLW-SAVLLDGPQ 62 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDY--MIQKSVEMGMGAIRPVITRY-TQNTH 121 R + Q + + ++ + RLD+ +++ + E+G+ ++P++ + + Sbjct: 63 ARLEQPLGQPLQRQAAASPWLELAVAIPRLDFDVVVRMACELGVDRLQPLVAEHGARRGS 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + A EQC+ L LP + P LE + + + T +E L Sbjct: 123 WKASRWQAILREACEQCERLWLPQLLEP--LEAITYLGETRAALALLASTREAELPLLG- 179 Query: 182 HAIAHIP---------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 A+A P VA+ IG EGG+ S + +SLGP ILR+ TAAVA Sbjct: 180 TALAQAPADPLAGAMDGVALAIGAEGGW-SPAEGAAAQAAGWQAVSLGPHILRTSTAAVA 238 Query: 233 AMA-LVQ 238 +A LVQ Sbjct: 239 GLASLVQ 245 >gi|42524645|ref|NP_970025.1| hypothetical protein Bd3271 [Bdellovibrio bacteriovorus HD100] gi|39576855|emb|CAE78084.1| Conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 253 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/247 (22%), Positives = 117/247 (47%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R +++ + Q +GD +H++ V R + G + + ++++V K Sbjct: 1 MRRYWIEKKDLFQDQVNFTGDVFHHIFDVCRQEIGSKFEVLTEDSKAYFVEVTHVSKKNA 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R K+ + + S + +D +++K+VEMG+ +I+P + ++ + Sbjct: 61 TARVLEERIIPALKEPHLHLVLSLSRFPVMDAIMEKAVEMGVTSIQPFFSEFSFLRKGEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADE---TCG 173 + DR SA +Q L ++P E + L N + + +FA E T Sbjct: 121 LSDNKTDRWDKIVKSATQQSGRGDLMKVHPAIPFEKISDLINRNGSGVGLFAYEGPSTLS 180 Query: 174 SENSLEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + + K+ A A I +V I++G EGG+ E E L + P++LGP++LR +TA + Sbjct: 181 IKEYVSKVKADHPAGIKDVWIIVGSEGGFSHREVEEFQKLG-LHPVTLGPQVLRVETACM 239 Query: 232 AAMALVQ 238 +++++ Sbjct: 240 TLVSVLK 246 >gi|160947756|ref|ZP_02094923.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270] gi|158446890|gb|EDP23885.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270] Length = 242 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 14/240 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIR- 66 R F D + + + K GD Y+++ VLR+ E + I + GE ++ I K I Sbjct: 3 RFFTDESI-LDGKVKIYGDDYNHIKKVLRITEDEKIEVVVL--GELYIGNIEICDKYISV 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 + +E S + + + + K ++D ++QK+VE+G+ I R ++ + Sbjct: 60 YNLEKISENTESKIKIHLLQCLAKGEKMDLIVQKAVELGVYDITLVNSKRCIVKFDEKKE 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSL 178 + ++R++ + A++Q L +P I + ++ N +V D+ + + Sbjct: 120 NKKIERLQKISYEASKQSKRLIVPKINELIQFKDIINFVGDNYLLVAYEEDKNISLRDVI 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ ++ ILIG EGG+ EE E L + + LG RILR++TA + ++++Q Sbjct: 180 TRIKEENSCKDIYILIGSEGGFEREEVEFLTN-NGAFSIGLGARILRTETAGINLLSILQ 238 >gi|300813571|ref|ZP_07093902.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512319|gb|EFK39488.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 230 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 34/223 (15%) Query: 25 SGDQYHYLAHVLRMKE--------GDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + + H+L +V+R+K+ D I+LFN KD + K S Sbjct: 17 NKENLHHLKNVIRIKDDEDFSVVFNDKIILFNLKDDRLIYKKEIFD------------SN 64 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMD----RVRTYT 131 + F +K ++ + +I+ E+G+ P+I R N +D R + Sbjct: 65 EPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCVSNISDKVDKKIQRWQKIA 124 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNV 190 SAA Q +P ++ P ++ + KN+ + + + DE ++ EKL N+ Sbjct: 125 KSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDERNLFFKDIKEKLSK-----NL 179 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 AI++GPEGG E E L +SLG RILR++T++V Sbjct: 180 AIIVGPEGGISKREIEVLKD---AHRISLGKRILRAETSSVVG 219 >gi|297623572|ref|YP_003705006.1| hypothetical protein Trad_1341 [Truepera radiovictrix DSM 17093] gi|297164752|gb|ADI14463.1| protein of unknown function DUF558 [Truepera radiovictrix DSM 17093] Length = 237 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 20/242 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M++H R+FV P + +G + +LA VLR++ G + F+G E + Sbjct: 1 MRVH----RVFV--PHLAAGERVLTGREAQHLAQVLRVRPGARVRAFDGAGLEADGTVRE 54 Query: 61 VGKSIRFKVEYQS---RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-- 115 V +R +E + R V + +K ++L +++++ E+G RP ++R Sbjct: 55 V-TGLRVTLELGAPYAREVEAALRVTLAVALLKGDKLAEVVRRATELGAVGFRPFVSRRC 113 Query: 116 -YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + + R+R AA+Q +P + L L A T G Sbjct: 114 DVRELSANKLARLRRVAQEAAKQSGRSVVPPVAEAAPLAHLSLPAPTLVAHPSAPRTLG- 172 Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E L A+ P + +L GPEGG +E L P+ LG RILR++TA VA Sbjct: 173 ----ETLAALTPPPTALTVLTGPEGGLTEDELAALTER-GAHPIRLGARILRAETAPVAL 227 Query: 234 MA 235 A Sbjct: 228 TA 229 >gi|126700066|ref|YP_001088963.1| hypothetical protein CD2449 [Clostridium difficile 630] gi|254976043|ref|ZP_05272515.1| hypothetical protein CdifQC_12049 [Clostridium difficile QCD-66c26] gi|255093431|ref|ZP_05322909.1| hypothetical protein CdifC_12334 [Clostridium difficile CIP 107932] gi|255101609|ref|ZP_05330586.1| hypothetical protein CdifQCD-6_12419 [Clostridium difficile QCD-63q42] gi|255307478|ref|ZP_05351649.1| hypothetical protein CdifA_12867 [Clostridium difficile ATCC 43255] gi|255315176|ref|ZP_05356759.1| hypothetical protein CdifQCD-7_12527 [Clostridium difficile QCD-76w55] gi|255517845|ref|ZP_05385521.1| hypothetical protein CdifQCD-_12086 [Clostridium difficile QCD-97b34] gi|255650961|ref|ZP_05397863.1| hypothetical protein CdifQCD_12291 [Clostridium difficile QCD-37x79] gi|260684030|ref|YP_003215315.1| hypothetical protein CD196_2295 [Clostridium difficile CD196] gi|260687690|ref|YP_003218824.1| hypothetical protein CDR20291_2342 [Clostridium difficile R20291] gi|115251503|emb|CAJ69336.1| putative methyltransferase [Clostridium difficile] gi|260210193|emb|CBA64400.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213707|emb|CBE05588.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 252 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 22/227 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQ 79 G+ +++ VLR K G+ + + + + E++ +I + KSI KV+ S+ K Sbjct: 21 EGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKSIVNLEILEKVDINRESELK- 79 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN------MDRVRTYTIS 133 V+ K +++ ++QK E+G+ I V T+ + + +R Sbjct: 80 --VRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVDDKKEDKKFERWERIIYE 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPN 189 AA+Q +P + + + L++ N + E +E ++ HA+ ++I + Sbjct: 138 AAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYE---NERTVSIKHALKKCDSNIDS 194 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 V I IGPEGG+ EE E + +SLGPRILR++TA+V A + Sbjct: 195 VGIFIGPEGGFSEEEIEQIQK-NNCNVVSLGPRILRTETASVVASTI 240 >gi|167754795|ref|ZP_02426922.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402] gi|237735918|ref|ZP_04566399.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705627|gb|EDS20206.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402] gi|229381663|gb|EEO31754.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 245 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 17/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ L K Q D H++ V+R GD I+ + + I + + Sbjct: 1 MQRYFINEDLTSKQQLILPDDDLHHVKKVMRNINGDEIICIDNAGQVYYGVIEDIEIGL- 59 Query: 67 FKVEYQSR-SQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 V+ R + + DV+ +++ K ++ + ++QK+ E+G+ I P+ T+ Sbjct: 60 --VKIDKRLEENNELDVEITLVYALPKGDKFELVLQKATELGVKRIVPIQTKRCVVKMDE 117 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176 Q + R R AAEQ +P I LE L + DHN + F + E+ Sbjct: 118 QKFAKKITRYRKILKEAAEQSWRNFIPEITNVIKLEQLDQYLGDHNL-VAFEELAKQGEH 176 Query: 177 SLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + K L ++ + I++G EGG+ +E E ++ L + SLG RILRS+TA + + Sbjct: 177 MVLKQTLDQLSSGDKITIVVGSEGGFELDEIEMMNKLG-IKACSLGKRILRSETAPLYFL 235 Query: 235 ALV 237 +++ Sbjct: 236 SVI 238 >gi|323359828|ref|YP_004226224.1| hypothetical protein MTES_3380 [Microbacterium testaceum StLB037] gi|323276199|dbj|BAJ76344.1| uncharacterized protein conserved in bacteria [Microbacterium testaceum StLB037] Length = 244 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 27/235 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+ + V R++ + + L +G+ G WL+ + + V +R ++ Sbjct: 22 TGSEAHHASAVRRVRVDEAVTLGDGR-GTWLTGLVTAASPKQVDVRITAREDVPAPSPRF 80 Query: 85 IF--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K +R + +Q + E+G+ AI P ++R+ + R RT AA+Q Sbjct: 81 VLVQALAKGDRDELAVQAATELGVDAIVPWQASRSVSRWDAKAEKGLARWRTIVREAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIP----N 189 +P + E L + D VF E ++ +L A+A + Sbjct: 141 AHRAWIPEV------EGLARTADLVRLAATSQVFVLEP----SAPARLTAVATEASDGRD 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG EE L + LG +LR+ TA AA++++ A G W Sbjct: 191 VVLVVGPEGGIAPEELSALER-AGARQVRLGETVLRTSTAGAAAISVLSAAHGRW 244 >gi|329924040|ref|ZP_08279303.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5] gi|328940879|gb|EGG37187.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5] Length = 256 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 17/227 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQSDV 82 +GD ++A V+R + GD +++ +G E L +I + F V E SQ + V Sbjct: 19 TGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSVFAVVIEPMEMSQEPRLQV 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 S K ++++ +IQK E+G + P ++ T + ++R R AAE Sbjct: 79 SIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAKKEGKRLERWRKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSE-------NSLEKLHAIAHIP 188 Q +P + P T + LL + + F ++ GS+ + + L A Sbjct: 139 QAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLRDVLKPFAEQALRESAKPA 198 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ +++GPEGG+ +EE+ + LG RILR +TA + A+A Sbjct: 199 SLLLVVGPEGGF-TEEECRAAEAAGAVAVGLGRRILRCETAGMTALA 244 >gi|218262623|ref|ZP_03477011.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii DSM 18315] gi|218223272|gb|EEC95922.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii DSM 18315] Length = 232 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 23/218 (10%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ EGD ILL +GK + + IS K + E + ++ Sbjct: 18 EEAGHCIRVLRLTEGDEILLTDGKGSFFKAAISRAHPKHCEVNILEQWEQPALWNFNLHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R+++ +K+ E+G+ AI + R+++ R+ +SA +Q TL Sbjct: 78 AVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIKPARLEKILVSAMKQSQKATL 137 Query: 144 PFIYPPT------TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIG 195 P + T +L F + + +C E ++ L + P N +LIG Sbjct: 138 PELNGMTDFRTFVSLPFAGRKFIAHC-----------EEGVKPLLKQTYHPGENALVLIG 186 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 PEG + EE F P+SLG LR++TAA+ A Sbjct: 187 PEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVA 223 >gi|110638000|ref|YP_678207.1| 16S ribosomal RNA methyltransferase RsmE [Cytophaga hutchinsonii ATCC 33406] gi|110280681|gb|ABG58867.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 234 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 109/217 (50%), Gaps = 13/217 (5%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFSP 88 ++ VLR+KEGD I + NG ++I+ + +K+ E Q ++ + + +P Sbjct: 22 HVVKVLRLKEGDAITVTNGNGIVVSAQITKADHRKCGYKIIEEQKLNKRSAARIHIAIAP 81 Query: 89 IKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 K +R++++++K E G+ A V+T +++ + + ++ +A +Q LP Sbjct: 82 TKNIDRMEWLVEKCTEFGIDAFSFVLTEHSERKNLPVAKLEKTAFAAIKQSGQPFLPHFS 141 Query: 148 PPTTLEFLLK----NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + L+ ++D+ I DE ++++ KL + + +LIGPEG + + Sbjct: 142 ELLSFTAFLQSDFSDYDYKL-IACLDE--APKSTILKL--VQPAKSCLVLIGPEGDFTQQ 196 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E + FV +SLG ILR++TAA+A+ ++ I Sbjct: 197 EVRSAVEKGFV-KISLGNSILRTETAAIASCHILNLI 232 >gi|227890818|ref|ZP_04008623.1| protein of hypothetical function DUF558 [Lactobacillus salivarius ATCC 11741] gi|227867227|gb|EEJ74648.1| protein of hypothetical function DUF558 [Lactobacillus salivarius ATCC 11741] Length = 243 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 23/243 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62 ++R F D I T+ + + + Y + VLRMK GD L + D E + K+ G Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDIFELVD--DVEVVHKMEITKIEDG 56 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 K+ VE +DV K ++ D+++QK EMG + Y+ Sbjct: 57 KAKATSVEVIPSDVELPADVTIACGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWD 116 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173 + + + R++ SAAEQ +P + T LK+ D ++ +IV +E+ Sbjct: 117 KKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172 Query: 174 SENSLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S + P N+ + GPEGG +E E L + F+ LGPRI+R++TA + Sbjct: 173 KGESGNLFKILNKKPSNIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231 Query: 233 AMA 235 +A Sbjct: 232 FLA 234 >gi|302380721|ref|ZP_07269186.1| RNA methyltransferase, RsmE family [Finegoldia magna ACS-171-V-Col3] gi|302311664|gb|EFK93680.1| RNA methyltransferase, RsmE family [Finegoldia magna ACS-171-V-Col3] Length = 241 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 11/161 (6%) Query: 89 IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +K+++ +Y+IQK+ E+G+ I R V+ + + DR + +++Q Sbjct: 84 LKSDKNEYIIQKATELGVNKIVFVETERTVVKLDDKKWNKKKDRFEKIALESSKQSKRTV 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I + +KN + +VF + + S + + + ++ I IGPEGG Sbjct: 144 IPEIEGLIKIN-EIKNTSNCLNLVFYE---NEKESFKSFLSNSKKKDINIFIGPEGGLSE 199 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + + L S F +SLG RILR+DTA + A++++Q GD Sbjct: 200 DNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQYELGD 239 >gi|299144167|ref|ZP_07037247.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518652|gb|EFI42391.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 238 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 15/217 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83 S + H+ VLR++E + I+ +G + + S G I K + + S ++SDV+ Sbjct: 17 SKENSHHYKTVLRIRE-EEIVEVGANNGVFKAIFDSCCGDFIILK-KVEEVSAERESDVK 74 Query: 84 YIF--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136 I +K +++D ++ SVE+G+ I P V+ + + + R + +AA+ Sbjct: 75 LILLQGILKGDKMDQALKSSVEVGVCEIYPLNTKRVVAQIDHKEYKKVQRWQRVVEAAAK 134 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q +P + P LE + + ++ IV + +E+ + NV ++IGP Sbjct: 135 QSKRDYIPRVNTPIDLEGIEEILENRELIVPYE----NEDDDRLVDIKLENKNVILVIGP 190 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 EGG+ E + L SL +SLG RILR++TAAV A Sbjct: 191 EGGFEETEIDYLKSLG-AKIVSLGNRILRAETAAVCA 226 >gi|289549080|ref|YP_003474068.1| hypothetical protein Thal_1310 [Thermocrinis albus DSM 14484] gi|289182697|gb|ADC89941.1| protein of unknown function DUF558 [Thermocrinis albus DSM 14484] Length = 247 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 14/156 (8%) Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHY---NMDRVRTYTISAAEQCDILTL 143 P++ ++D++++K E+G + P+++ R QN +R R S+ +QC Sbjct: 88 PVEIGKMDFIVEKVSEVGAYQLTPLLSSRSFQNLQALEKRYERWRRIAFSSFKQCGRPIP 147 Query: 144 PFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 I P T LE D C+ + ++ G E L +++ + + V +++GPEGG+ Sbjct: 148 LEIAPVTHLE------DLKCRGGVCMVLDSFGGEIWLSEVN-LKDVKEVHLVVGPEGGFS 200 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E + L F+ P+ L P LRS+TAAV A+ LV Sbjct: 201 EKEVQLLREKGFL-PVRLRPYTLRSETAAVLAVGLV 235 >gi|332293484|ref|YP_004432093.1| protein of unknown function DUF558 [Krokinobacter diaphorus 4H-3-7-5] gi|332171570|gb|AEE20825.1| protein of unknown function DUF558 [Krokinobacter diaphorus 4H-3-7-5] Length = 234 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 10/211 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 D+ ++ VLR K GD I L NG + + ++ R ++E S + + + Sbjct: 21 DESKHVIRVLRKKTGDAIHLTNGHGYLFNAIVAEENPNKCRLQIESYSYQEPRNYKLHLA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P++ +++ +R SA +Q LP Sbjct: 81 VAPTKLNDRFEWFLEKATEIGITEITPLLCDHSERKVIKEERFMKIIQSAMKQSLHYHLP 140 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA--ILIGPEGGYHS 202 + T+ + + +H + E E+ + L PN + ILIGPEG + Sbjct: 141 KMNALTSFSDFVGHQNHEDTFIAHCEDLKKESLKDYLK-----PNKSYTILIGPEGDFSP 195 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E L + P+SLG LR++TAA+ A Sbjct: 196 AEIE-LALKQGIIPVSLGKSRLRTETAAIVA 225 >gi|260590983|ref|ZP_05856441.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319] gi|260536848|gb|EEX19465.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319] Length = 255 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 19/221 (8%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ--TKQSDVQYIFSPIK- 90 VLR+KEGD I L +G+ + +++S F Q Q T + +P K Sbjct: 28 RVLRLKEGDEIFLMDGEGSFYQAEVSLATSKKCFYTIKQVLKQEPTWCGKIHLAIAPTKD 87 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 R+++M++K+ E+G I + ++++ DR+ ISA +Q P + T Sbjct: 88 MGRMEWMVEKATEIGFDEITFLNCKFSERKVLRTDRIEKIVISAVKQSHKAWKPVVNDMT 147 Query: 151 TLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIP-----NVAILIGPE 197 + + N N Q C SE + H + I ++ +L+GPE Sbjct: 148 SFCKFIDNHKCNGQKYICH--CYSEIDRDDFFTLIDTFAHNVQDIKPSIGNDITVLVGPE 205 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 G + EE F + ++LG LR++TA ++A+ + Q Sbjct: 206 GDFSIEEVRYAIDHGFKS-VTLGNSRLRTETAGLSAVMMSQ 245 >gi|217964384|ref|YP_002350062.1| protein YqeU [Listeria monocytogenes HCC23] gi|217333654|gb|ACK39448.1| protein YqeU [Listeria monocytogenes HCC23] gi|307571051|emb|CAR84230.1| conserved hypothetical protein [Listeria monocytogenes L99] Length = 255 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 15/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ A E Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEATE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L ++ P ++L Sbjct: 140 QSHRTVIPEVHYAASFKELMYDHVHYDYVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVAAMA 235 GPEGG EKE LH L+ LGPRILR++TA + ++ Sbjct: 200 IFGPEGGI--SEKELLHLQEVNAKLAGLGPRILRTETAPLYVLS 241 >gi|300214541|gb|ADJ78957.1| Putative uncharacterized protein [Lactobacillus salivarius CECT 5713] Length = 243 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 23/243 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62 ++R F D I T+ + + + Y + VLRMK GD L + D E + K+ G Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDAFELVD--DAEVVHKMEITKIEDG 56 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 K+ VE S+V K ++ D+++QK EMG I Y+ Sbjct: 57 KAEATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWD 116 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173 + + + R++ SAAEQ +P + T LK+ D ++ +IV +E+ Sbjct: 117 RKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172 Query: 174 SENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S + P+ I I GPEGG +E E L + F+ LGPRI+R++TA + Sbjct: 173 KGESGNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231 Query: 233 AMA 235 +A Sbjct: 232 FLA 234 >gi|116510923|ref|YP_808139.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris SK11] gi|116106577|gb|ABJ71717.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris SK11] Length = 250 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 17/223 (7%) Query: 30 HYLAHVLRMKEGDNILLF--NGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 H++ V+R + GD + L GK G LS+I S +S+R +E + S V Sbjct: 27 HHIFTVMRAQAGDQLRLVFEEGKIG--LSEIISPADQSVRL-IELLTDSSELPVQVTVAV 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTISAAEQCDI 140 K ++LD++++KS E+G AI P ++ H + +++ + AAEQ Sbjct: 84 GFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKLTKKQEKLEKVALGAAEQSRR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIGP 196 +P I L + + Q++ A E E S+ K L ++ V I+ GP Sbjct: 144 QLIPKIQLFDQFSRLTEQFSDFDQVLVAYEESAKMGETSMFKQALTELSANQKVLIIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EGG +E +L + LGPRILR++TA + A++ + A Sbjct: 204 EGGISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSSISA 245 >gi|212702535|ref|ZP_03310663.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098] gi|212673976|gb|EEB34459.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098] Length = 245 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 10/217 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G + +L VLR+ G+ +LL +G+ I+ K R ++ + + +S Sbjct: 21 GQEAKHLVQVLRLAPGEEVLLLDGQGRSGRFAIAETAKKKARLILQEEQMAPAPESRAVM 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYTISAAEQCDILT 142 + K R + ++K+VE+G AI ++Q + R I+ A+QC Sbjct: 81 ALAFSKAVRRGFFMEKAVELGAHAIWLWQGDHSQGKLPADAAESCRGQLIAGAKQCGNPW 140 Query: 143 LPFIYPPT--TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGG 199 LP + T E + + +C+I+ E + N L +A P + +IGPEGG Sbjct: 141 LPQVEALTGGVDELVRRAATVDCRIL-PWEMQDTVNMLTP--RLAGRPGTTVYVIGPEGG 197 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + E ++L + F T +SLG R+LR +TAA + L Sbjct: 198 FSQRELDSLRAAQF-TFVSLGARVLRCETAATLCLGL 233 >gi|310643066|ref|YP_003947824.1| protein [Paenibacillus polymyxa SC2] gi|309248016|gb|ADO57583.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 254 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 17/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ ++ +G+ ++A V+R + GD I++ +G E L+ + + + Sbjct: 1 MQRYFIPAEQFLEDHVIVTGEDARHIAKVMRGRSGDKIIVSDGVSREALAALDTIEQDHV 60 Query: 67 FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + T + VQ S K ++++ ++QK E+G P ++ T + Sbjct: 61 KATIIEPLEMTSEPYVQITIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P + P T + LL ++ I + E Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEVSAPLTWKELLASFAGYDLICYCYEKEQGRQLR 180 Query: 179 EKLHAIA------HIPNVAILIGPEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAV 231 + + A P V +++GPEGG+ E E+L + LG RILR++TA + Sbjct: 181 DVIQPFAGHWASTDKPRVLVVVGPEGGFT--EAESLEAEQAGAQSTGLGRRILRAETAGM 238 Query: 232 AAMALV 237 A+A + Sbjct: 239 VALACI 244 >gi|169824474|ref|YP_001692085.1| hypothetical protein FMG_0777 [Finegoldia magna ATCC 29328] gi|167831279|dbj|BAG08195.1| conserved hypothetical protein [Finegoldia magna ATCC 29328] Length = 241 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 11/161 (6%) Query: 89 IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +K+++ +Y+IQK+ E+G+ I R V+ + + DR + +++Q Sbjct: 84 LKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDKKWNKKKDRFEKIALESSKQSKRTV 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I + +KN + +VF + + S + + + ++ I IGPEGG Sbjct: 144 IPEIEGLIKIN-EIKNTSNCLNLVFYE---NEKESFKSFLSNSKNKDINIFIGPEGGLSE 199 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + + L S F +SLG RILR+DTA + A++++Q GD Sbjct: 200 DNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQYELGD 239 >gi|325280830|ref|YP_004253372.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter splanchnicus DSM 20712] gi|324312639|gb|ADY33192.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter splanchnicus DSM 20712] Length = 234 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 11/214 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQTKQS 80 + D+ + VLR+ G+ + L +GK G W + + G IR + + + Sbjct: 17 NADESRHCVRVLRLGAGEAVSLVDGK-GTWYEGVIERAEVRGCEIRI-TDRRELYGRRNF 74 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R+++M++K EMG+ I + +++ +R+ ++A +Q Sbjct: 75 HLHLAVAPTKNIDRIEWMLEKCTEMGIDEITLLHAAHSERKVVKEERLEKVIVAAMKQSL 134 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + P T L+ + + + A G + L++++ +V ILIGPEG Sbjct: 135 KAYLPRLNPMTDFRQLVTSCREPHKFI-AHCNEGDKKRLDEVYRPGE--DVVILIGPEGD 191 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + EE FV P++LG LR++TA + A Sbjct: 192 FSEEEVVLARHHGFV-PVTLGTSRLRTETAGIVA 224 >gi|288802568|ref|ZP_06408007.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18] gi|288335096|gb|EFC73532.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18] Length = 244 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 15/216 (6%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV-----QYIFSP 88 VLR+KEGD + L +G+ + ++++ V K Y + KQ V +P Sbjct: 28 RVLRLKEGDEMFLMDGEGCFYKAEVALVSSK---KCLYTIKETLKQEPVWRGKIHLAIAP 84 Query: 89 IK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 K R+++M +K+ E+G I + ++++ DR+ ISA +Q P + Sbjct: 85 TKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRADRIEKIVISAVKQSRKGWKPVVN 144 Query: 148 PPTTLEFLLKNWDHN-----CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P T ++N +N C ++ + + ++ +L+GPEG + Sbjct: 145 PMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQEEQPSSAEDITVLVGPEGDFSI 204 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E F + + LG LR++TA ++A+ + Q Sbjct: 205 DEVRFALEHGFESVI-LGNSRLRTETAGLSAVMMSQ 239 >gi|83589451|ref|YP_429460.1| hypothetical protein Moth_0587 [Moorella thermoacetica ATCC 39073] gi|83572365|gb|ABC18917.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 246 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 20/232 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 G+ H+ VLR+++G++I L + + ++I + + R + + + V+ Sbjct: 20 EGENAHHAIRVLRLRQGESITLADSNGQGYRAEIVAITEG-RVAAAIKDPLDSPEPRVRV 78 Query: 84 --YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 Y P K +++D +I+K E+G+ I + T + Q +R + +AA Sbjct: 79 TLYQGWP-KGDKMDLIIEKCTELGVDRIVVLATERSIPRPDQQTCARRRERWQQKAHAAA 137 Query: 136 EQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVA 191 Q +P + P L E L+K +V +E E + + +A +P +A Sbjct: 138 RQSRRHRIPVVDGPLGLAEALVKLRPDTLLLVPWEE----ERTRDLKSILATVPADRELA 193 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +LIGPEGG E + + PL+LGPRILR++TA +A +A + G+ Sbjct: 194 LLIGPEGGLSRAEVDLACRFGGL-PLTLGPRILRTETAGLACLAAIMYAMGE 244 >gi|120436000|ref|YP_861686.1| 16S ribosomal RNA methyltransferase RsmE [Gramella forsetii KT0803] gi|117578150|emb|CAL66619.1| protein containing DUF558 [Gramella forsetii KT0803] Length = 237 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 9/211 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKSIRFKVEYQSRSQTKQSDVQY 84 D+ ++ VLR EGD + + NG +G ++ I K KV + V Sbjct: 21 DESKHIVKVLRKSEGDILNITNG-NGLLINAEIIKADIKQCLAKVISVEKQPAPPYYVHM 79 Query: 85 IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 I +P K N R ++ ++K++E+G+ I P+I +++ ++R SA +Q + Sbjct: 80 IVAPTKMNDRYEWFLEKAMEIGVHEITPIICDHSERKVVKLNRFERVLQSAMKQSLHYRM 139 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + P +F+ + + I +E G +N L+ + I N+ ILIGPEG + Sbjct: 140 PKLNDPINFSDFIATEIEGSKYIAHCEEETG-KNYLQ--NEIIPGENINILIGPEGDFSK 196 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 EE E + + +SLG LR++TAA+ A Sbjct: 197 EEIEKAINKGW-NAVSLGDSRLRTETAAIVA 226 >gi|154493617|ref|ZP_02032937.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC 43184] gi|154086827|gb|EDN85872.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC 43184] Length = 232 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 29/221 (13%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----D 81 ++ + VLR+ EGD ILL +GK + + IS E Q +Q + Sbjct: 18 EEAGHCIRVLRLTEGDEILLTDGKGFFFKAAISRAHPK---HCEVNILEQWEQPALWNFN 74 Query: 82 VQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 + +P K +R+++ +K+ E+G+ AI + R+++ R+ ISA +Q Sbjct: 75 LHIAVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIKPARLEKILISAMKQSQK 134 Query: 141 LTLPFIYPPT------TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAI 192 TLP + T +L F + + +C E ++ L + P N + Sbjct: 135 ATLPELNGMTDFRTFVSLPFAGRKFIAHC-----------EEGVKPLLKQTYHPGENALV 183 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 LIGPEG + EE F P+SLG LR++TAA+ A Sbjct: 184 LIGPEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVA 223 >gi|225550485|ref|ZP_03771434.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379639|gb|EEH02001.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 234 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 32/222 (14%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------VQ 83 H++ +V+RM+ D I++ N ++ + I + + + + +D + Sbjct: 22 HHIKNVMRMRLHDEIIVINETQA-------FIAEIINLEPLHATIIKPYFNDCELSTKID 74 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILT 142 + IK N ++++QK+ E+G+ +I I + T N T +R+ T A EQ Sbjct: 75 LFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNNRISTIIKEACEQARRNY 134 Query: 143 LPFIYPPTTLEFLLK---NWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 L Y + LLK N+D N + F ++ ++ +K +A++ Sbjct: 135 LVNYYEQFSFSELLKVLLNYDLILVAYENEKQFFLNDVFKENSTYQK---------IALV 185 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ EE L + V +SL ILRS+TA++ +A Sbjct: 186 IGPEGGFEQEEIALLKKINNVACISLTKTILRSETASLYLLA 227 >gi|313893412|ref|ZP_07826984.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158 str. F0412] gi|313442053|gb|EFR60473.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158 str. F0412] Length = 243 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 9/162 (5%) Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISAAEQC 138 + S +K +L++++QK+ E+ + I V + +Y + + R + AA+QC Sbjct: 78 VQSLLKGEKLEWVLQKATELNVDTIYLVSTANCVAKYDDKKLQSKVSRWEKIMLEAAQQC 137 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAIAHIPNVAILIGP 196 LP + L +L D ++V + G + +LE +H+ +I ++ I IGP Sbjct: 138 GRNQLPTLVVGEKLSQVLAIEDDAFKLVAYENEEGHTIKIALESIHSNQNITDILICIGP 197 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EGGY +E + +SLG ILR++TAA+ ++A++Q Sbjct: 198 EGGYQEKEINAIIE-SGGKSVSLGNTILRAETAAIGSLAMIQ 238 >gi|289423857|ref|ZP_06425650.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus anaerobius 653-L] gi|289155634|gb|EFD04306.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus anaerobius 653-L] Length = 258 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 23/257 (8%) Query: 7 LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + R FVD I TQ + GD +++ VLR GD + + +G++ E++ +I + K Sbjct: 1 MDRFFVDRE-NIDTQARNLVILGDDVKHISKVLRYSVGDELEVCDGQNKEYICRIDSMDK 59 Query: 64 SIRFKVEYQSRSQTKQSDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVIT 114 + + + ++S ++ Y P K+ +++ ++QK E G+ I R V+ Sbjct: 60 TEIGLSIIEEKDVDRESPIRIKLYQGLP-KSTKMEIILQKLTECGVAEIILVNTARSVVN 118 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + +DR + AA+Q +P + + + L++ + N + E GS Sbjct: 119 IDDKKSEKKLDRWQRIVYEAAKQSKRGIIPDLKGIYSFKEALRDMEVNDINIMPYEEEGS 178 Query: 175 EN--SLEKLHAIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 L + I I + I IGPEGG+ +E + + +GPRI R+ Sbjct: 179 LGIKDLLRSEGIQQIIKENKSATIGIFIGPEGGFTEDENAKVKEAGG-HSVKMGPRIFRT 237 Query: 227 DTAAVAAMALVQAICGD 243 +TA++ A ++ GD Sbjct: 238 ETASIVATSICLYELGD 254 >gi|239906459|ref|YP_002953200.1| hypothetical protein DMR_18230 [Desulfovibrio magneticus RS-1] gi|239796325|dbj|BAH75314.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 241 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 18/214 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT----KQS 80 +G + + A VLR + G+ + F+G L +I VG+ R ++ +S +T ++ Sbjct: 21 TGGEASHCAKVLRKRPGELVRAFDGTGHHGLFRIETVGRD-RVELIPESLEETPPPARRL 79 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYT---ISAA 135 + FS ++ R D+ ++K+VE+G I + + T M D +T I+AA Sbjct: 80 HIAAGFS--RSARRDFFLEKAVELGAAGI---VFWQAERTQGKMPGDPKEAWTAGLIAAA 134 Query: 136 EQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +QC LP + P L K + E L +A + ++ Sbjct: 135 KQCGAALLPTLACVPGGAAGLTKAGQAYPRRFLLWEDPAVSRPLTPTD-LAAAGDTLCVV 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 GPEGG+ E T+ + F+ P++LGPR+LR +T Sbjct: 194 GPEGGFTDAEATTITAAGFI-PVTLGPRVLRWET 226 >gi|125622990|ref|YP_001031473.1| hypothetical protein llmg_0111 [Lactococcus lactis subsp. cremoris MG1363] gi|124491798|emb|CAL96718.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300069731|gb|ADJ59131.1| 16S ribosomal RNA methyltransferase RsmE [Lactococcus lactis subsp. cremoris NZ9000] Length = 250 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 13/221 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 H++ V+R + GD + L + LS+I S +S+R +E + S V Sbjct: 27 HHIFTVMRAQAGDQLRLVFEEGTIGLSEIISPADQSVRL-IELLTDSSELPVQVTVAVGF 85 Query: 89 IKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTISAAEQCDILT 142 K ++LD++++KS E+G AI P ++ H + +++ + AAEQ Sbjct: 86 PKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKLTKKQEKLEKVALGAAEQSRRQL 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIGPEG 198 +P I L + + Q++ A E E S+ K L ++ V I+ GPEG Sbjct: 146 IPKIQLFDQFSRLTEQFSDFDQVLVAYEEAAKMGEKSMFKQALTELSANQKVLIIFGPEG 205 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 G +E +L + LGPRILR++TA + A++ + A Sbjct: 206 GISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSSISA 245 >gi|153815335|ref|ZP_01968003.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756] gi|317501690|ref|ZP_07959881.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088425|ref|ZP_08337340.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847397|gb|EDK24315.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756] gi|316896941|gb|EFV19021.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330408192|gb|EGG87680.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 16/224 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK G+++ + +G+ +L ++ Y V + ++T+ Sbjct: 20 GADLNHMKNVLRMKVGEDVRINDGQGTTYLCCLNRYEKDQAVLDVFRKLDTETELPSEII 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 +F + K +++++++QKSVE+G A R V+ + +R + AAEQ Sbjct: 80 LFQGLPKGDKMEWIVQKSVELGAHKIVPFSAKRSVVKLDEKKAVKKQERWQLIAKGAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILI 194 +P + + L+ + ++ E E E + I I +V I I Sbjct: 140 SGRGVIPEVCGVCSFTEALEQAESLDVVLIPYEL--EEGMAETVRVIEQIEPGQSVGIFI 197 Query: 195 GPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ EE E L + P++LG RILR++TA + ++++ Sbjct: 198 GPEGGF--EEAEVLRAKEKGARPVTLGKRILRTETAGLTTLSIL 239 >gi|281357011|ref|ZP_06243501.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] gi|281316569|gb|EFB00593.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 17/214 (7%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + +L LR GD + L +G+ G L+ + + V + + + + Y Sbjct: 22 ESDHLFKTLRAAPGDTVELLDGRGGRALATVQP--GRVLLTVSREQVPEPETGLLLYTAV 79 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 P K + D +++++ E+G+ IR ++ + DR T +Q LP I Sbjct: 80 PRKA-KFDTLLKQAAELGVREIRLLLCERSVAAPEGSDRWETLLQEGCKQSGNPFLPKIA 138 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEE 204 PP L L + G ++E A A P NVA +GPEGG+ + Sbjct: 139 PPVKLAAALAEFSGT----------GYFGAVENPGAEAPRPAAGNVAWFVGPEGGF-TAA 187 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E + + L+LGP +LR +TAAV +A+++ Sbjct: 188 EEEAMAHANIHALNLGPYVLRLETAAVCGLAVLR 221 >gi|217076608|ref|YP_002334324.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho africanus TCF52B] gi|217036461|gb|ACJ74983.1| conserved hypothetical protein [Thermosipho africanus TCF52B] Length = 226 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 29/217 (13%) Query: 30 HYLAHV--LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIF 86 H H+ +R KE D I +GK + KI+ +GK F +S+ + + +F Sbjct: 19 HETVHIKTVRKKENDIIECTDGKGYYYKVKITQIGKKKSFGEILESKYIENNEKTFLSLF 78 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDILTLP 144 +P + RL ++I+KSVE+G+ I T ++ + + ++++ +A+QC P Sbjct: 79 APASRWERLRWLIEKSVELGVDNIYITKTAFSNRDYKDKVEKINMVIRDSAKQCVRFHFP 138 Query: 145 ---FIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 FI + KN D N Q KL A +V+I++GPEG Sbjct: 139 NVDFITFKNIKNYATKNTYFLDFNGQ---------------KLPANID-GDVSIIVGPEG 182 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 G+ EE + L S + LG +ILR +TAA A++ Sbjct: 183 GFSKEELDFLFSN--FNAIRLGNKILRFETAAFVALS 217 >gi|258651801|ref|YP_003200957.1| hypothetical protein Namu_1573 [Nakamurella multipartita DSM 44233] gi|258555026|gb|ACV77968.1| protein of unknown function DUF558 [Nakamurella multipartita DSM 44233] Length = 259 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 17/229 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G + + A V R++ G+ ++L +G + ++ G++ + V+ R V Sbjct: 37 GPEGRHAAAVRRLRVGEALVLTDGAGRLAAAVVTAAGRAELTLDVQPAHRQPPPDVRVTL 96 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-------RYTQNTHYNMDRVRTYTISAAEQ 137 + + K R + ++ + E G+ AI P R + R R +A+Q Sbjct: 97 VQALPKGERGELAVELATEAGVDAIVPWTAQRCMARWRTPDQVDKGVRRWRATARESAKQ 156 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIG 195 +P ++ P T + +V E+S+ L A P +V +++G Sbjct: 157 ARRAFVPPVHEPATTAEVGARLTGATALVL------HESSVTPLAAAGLPPAGDVVLIVG 210 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 PEGG +EE+ T+ T + LGP++LR+ TA A+ + + G W Sbjct: 211 PEGGL-TEEELTVFGSAGATVVRLGPQVLRTSTAGAVALGALGVLTGRW 258 >gi|332288757|ref|YP_004419609.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis UMN179] gi|330431653|gb|AEC16712.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis UMN179] Length = 210 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 45/230 (19%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPI--KTNRL 94 MK G+ + LF+G + + + I+ + K + V Q+ ++S + + + R+ Sbjct: 1 MKVGEALELFDGSNHIYPAVITEISKK-QITVALQNAIFDDRESPLNIHLGQVISRGERM 59 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTLPF 145 ++ IQKSVE+G+ I P+ +++ +D R I+A EQC +P Sbjct: 60 EFTIQKSVELGVKTITPL---WSERCGVKLDAERMEKKIQQWQKIAIAACEQCGRNIIPE 116 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-------AIAHIP-----NVAIL 193 I P L+ +W C + + KL+ +I +P V +L Sbjct: 117 IRPLMKLQ----DW------------CAENDGMLKLNLHPRASQSIKQLPPPPAAGVRLL 160 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IG EGG +E E F T + LG R+LR++TA++ A++ +Q GD Sbjct: 161 IGSEGGLSEQEIEQTVQQGF-TEVLLGKRVLRTETASLVAISALQICFGD 209 >gi|116492884|ref|YP_804619.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745] gi|116103034|gb|ABJ68177.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745] Length = 245 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 23/246 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--S 64 ++R FV PL I+ + + S + H+L V+R G ++ + + +++++ G + Sbjct: 1 MQRYFVKQPLKIQAELQLSKEDSHHLIRVMRTDIGQDVEVVDLDGKVFIAEVLKSGSIAT 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQ- 118 +R K E ++S D+ K ++ + +I++ EMG R + R+++ Sbjct: 61 LRTK-EDITKSVELPVDITIACGISKGDKNEQIIKRGTEMGAKHFIFFESRYSVARWSEP 119 Query: 119 NTHYNMDRVRTYTISAAEQCD---ILTLPFIYPP----TTLEFLLKNWDHNCQIVFADET 171 + R+R AAEQ I T+ FI P TT+E + ++ + + DE Sbjct: 120 KVEKKLKRLREIAKGAAEQSHRQLIPTVVFIKAPALFETTIEHRMVAYEESAK---QDEH 176 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 ++ L +L A + V GPEGG+ EE + FV LGPRILR++TA + Sbjct: 177 ANFKSLLLQLKAGDQLLAV---FGPEGGFAEEEIQEFTEHQFVLA-GLGPRILRAETAPM 232 Query: 232 AAMALV 237 ++ V Sbjct: 233 YLLSAV 238 >gi|70726340|ref|YP_253254.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus haemolyticus JCSC1435] gi|68447064|dbj|BAE04648.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 250 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 89 IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 IK ++ +++IQK+ E+G + R V+ ++R + AAEQ L Sbjct: 86 IKADKYEWLIQKATELGADSFIVVEMDRSVVKLTPNKVQKKLERWQKIIKEAAEQSYRLI 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSL--EKLHAIAHIPNVAILIGPEG 198 +P I + L + +H I+ A DE E SL E L + ++ GPEG Sbjct: 146 IPNIIFKSNLNEIYDTINHYDYILLAYEDEAKRGEVSLFKETLKKFKTNDRILLIFGPEG 205 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G+ +E L+ F + LGPRILR++TA + A++ + Sbjct: 206 GFSEKEITLLNETSF--NVGLGPRILRAETAPLYALSAI 242 >gi|291287099|ref|YP_003503915.1| hypothetical protein Dacet_1187 [Denitrovibrio acetiphilus DSM 12809] gi|290884259|gb|ADD67959.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM 12809] Length = 228 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 16/211 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK-SIRFKVEYQSRSQTKQSDV 82 GD +HYL +V+R K GD I + D E+ I+ +GK + VE ++ + Sbjct: 17 EGDYFHYLKNVVRAKAGDLIGVL--ADDEYAECTITDMGKRNAVMSVESCRPAKRYTHKL 74 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDI 140 + +K +D+ ++K E+G I PVI+ + N M R ++ AA Q + Sbjct: 75 KVYQCLLKREYMDFAVEKYTELGATEIVPVISERSLNDLKDKTMQRYHDISVKAALQSEN 134 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP I+ + + + N ++F E C E+ ++I+IGPEGG+ Sbjct: 135 EQLPVIHDAVGIADIQPDMQSN--LIFY-ERC------EERGCFNTTNEMSIVIGPEGGF 185 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 EE L F TP+ IL+++TA+V Sbjct: 186 TEEEYHMLKDKGF-TPVRPIDNILKAETASV 215 >gi|313618886|gb|EFR90752.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua FSL S4-378] Length = 255 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R FV++ L + +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYT 117 + V++ ++ K ++L+ +IQKS E+G A R V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAIAHI--PNVAIL--IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVA 232 L ++ P ++L GPEGG EKE L L+ LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGIS--EKELLLLQEVNAKLAGLGPRILRTETAPLY 238 Query: 233 AMA 235 ++ Sbjct: 239 VLS 241 >gi|261405594|ref|YP_003241835.1| hypothetical protein GYMC10_1745 [Paenibacillus sp. Y412MC10] gi|261282057|gb|ACX64028.1| protein of unknown function DUF558 [Paenibacillus sp. Y412MC10] Length = 256 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 17/227 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQSDV 82 +GD ++A V+R + GD +++ +G E L +I + F V E SQ V Sbjct: 19 TGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSVFAVVIEPMEMSQEPLLQV 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 S K ++++ +IQK E+G + P ++ T + ++R R AAE Sbjct: 79 SIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAKKEGKRLERWRKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSE-------NSLEKLHAIAHIP 188 Q +P + P T + LL + + F ++ GS+ + + L A Sbjct: 139 QAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLRDVLKPFAEQALRESAKPA 198 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ +++GPEGG+ +EE+ + LG RILR +TA + A+A Sbjct: 199 SLLLVVGPEGGF-TEEECRAAEAAGAVAVGLGRRILRCETAGMTALA 244 >gi|33863058|ref|NP_894618.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9313] gi|33634975|emb|CAE20961.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str. MIT 9313] Length = 258 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 13/215 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYI 85 D+ HYL VLR++ G + L +G W + + G ++ S S Q + Q Sbjct: 29 DEVHYLRRVLRLRNGQAVALVDGVGHFWEAHLQ-AGDFLKLDTSPSSPSLQQPRHRQQLG 87 Query: 86 FSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTL 143 + + R + +++ S E+G+ I+P+ + R T R R A EQ + L Sbjct: 88 LAVVLPKRGFEEVLRMSCELGVNLIQPLRSDRCTPQAEERPLRWRVILREAVEQSEQLWQ 147 Query: 144 PFIYPPTTLEFLLKN-WDHNCQIVFADETCGSEN--SLEKLHA--IAHIPNVAILIGPEG 198 P + P L K+ DH VFA T + L+ L I V + IGPEG Sbjct: 148 PELLPIAEASALWKSPPDHA---VFALATTRRQGLIDLQLLMEGLTPEINQVTVAIGPEG 204 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 G+ E+ + +V P++LG ILR+ TAAVAA Sbjct: 205 GWSPLEECAAEAAGWV-PVALGDSILRTCTAAVAA 238 >gi|237740316|ref|ZP_04570797.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422333|gb|EEO37380.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 235 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 22/219 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87 +++ +V R ++GD + +G + E+L +I + K I+ K+ E ++ + ++ S Sbjct: 23 NHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLDIELDAAIS 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R DR T A +QC + + Sbjct: 82 ILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQCQGVVPTVV 141 Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEG 198 ++ L LK++D N + VF + L + P+ + +IG EG Sbjct: 142 DEIKKIDKLNLKDYDLVLVPYENEEEVFLKDI---------LRNLKVKPSKILYVIGAEG 192 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G+ EE + L S +SLG RILR++TAA+ ++ Sbjct: 193 GFEKEEIDFLKS-QGAKIISLGKRILRAETAAIVTGGVI 230 >gi|237756071|ref|ZP_04584649.1| conserved surface protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691764|gb|EEP60794.1| conserved surface protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 236 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 112/225 (49%), Gaps = 24/225 (10%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS--IRFKVEYQSRSQTKQSDVQY 84 +Y++ VLR+K+ D ++ N DG +L+K+ + K+ I +E + + Y Sbjct: 21 EYNHAVKVLRVKQND-LIEINTFDGNVYLAKVEDISKNQLIALSIEKIPIKEEEFKITLY 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCDI 140 P + +++D +I+ ++G+ + PVI++ + Q+ +++ + +++ +QC Sbjct: 80 QCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDVAKKLEKWQRIALNSIKQCK- 138 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIG 195 P I + +K+ D ++VF ++ EK + I + N V++ IG Sbjct: 139 RPFPLIIEKPIKLYNIKSNDE-LKVVFYEK--------EKQNKIKMLMNKTFKTVSVFIG 189 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 EGG+ EE E L F+ PLSLG IL+ +TA + + ++ I Sbjct: 190 NEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233 >gi|323345370|ref|ZP_08085593.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269] gi|323093484|gb|EFZ36062.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269] Length = 248 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVE-YQSRSQTKQSDVQY 84 D+ + VLR+K GD L +G + ++++ K + V+ +++T + Sbjct: 21 DEAAHALRVLRLKAGDEFFLMDGAGSFFRAELTVTSAKRCMYAVKAVLPQTKTWNGHIHL 80 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K R++++++K+ E+G + + R+++ R+ +SA +Q Sbjct: 81 AIAPTKMMERMEWLVEKATEIGFDELSLLDCRFSERRQVKTARLEKIVVSAVKQSRKPWK 140 Query: 144 PFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P ++ T + F+ I + E+ +KL + +V +LIGPEG + Sbjct: 141 PLVHEMTDFKTFVESRQKGRYFIAHCYDDVPKEDLYDKLTKHSGNEDVTVLIGPEGDFSI 200 Query: 203 EEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EE H P+SLG LR++TA + A+++ Q Sbjct: 201 EEVNFALEHG---CEPVSLGASRLRTETAGLLAVSMAQ 235 >gi|167847329|ref|ZP_02472837.1| hypothetical protein BpseB_18782 [Burkholderia pseudomallei B7210] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 29/225 (12%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 75 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVR 133 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + R ++ EQC LP I P ++ +D + A G+ Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP-------VRGFDAWLDALPATPADGA 186 Query: 175 ENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHS 210 L A A +P +V +LIGPEGG +E++ + Sbjct: 187 LRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARA 231 >gi|154686804|ref|YP_001421965.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus amyloliquefaciens FZB42] gi|154352655|gb|ABS74734.1| YqeU [Bacillus amyloliquefaciens FZB42] Length = 256 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS-IRFKV-EYQSRSQTKQSD 81 +G+ H++A+V+RM GD I+ + KDG E L + V K I + E+ ++ Sbjct: 22 TGEDVHHIANVMRMSAGDRIICCS-KDGHEALCLLKEVSKDHISCSIAEWTGENRELPLK 80 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135 ++ K ++L+++IQK E+G R V+ + +R AA Sbjct: 81 IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAA 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVA 191 EQ +P + T LL+ ++ C + + + + E +L ++ ++ Sbjct: 141 EQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL 200 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E L V LGPRILR++TA + A++ V Sbjct: 201 IVFGPEGGLTESEVHQLSEKGAVL-CGLGPRILRTETAPLYALSAV 245 >gi|254415665|ref|ZP_05029424.1| conserved hypothetical protein TIGR00046, putative [Microcoleus chthonoplastes PCC 7420] gi|196177615|gb|EDX72620.1| conserved hypothetical protein TIGR00046, putative [Microcoleus chthonoplastes PCC 7420] Length = 295 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 62/288 (21%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI------S 59 +L+RL + Q + Q HYL VLR+ EGD + +G+ WLS++ + Sbjct: 9 NLQRLVISPTQRQNQQILLTESQQHYLVRVLRLTEGDRFIAMDGEGNWWLSELMANLTQA 68 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117 + +SI + E + I + K + + +I + E+G+ I P+ + T Sbjct: 69 TIIESIPIQTELPCA-------ITLIAAMPKGSGFEDIISAATELGVTDIIPIKSDRTIL 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK----------------NWDH 161 + ++R R AAEQ + +P I P +K N H Sbjct: 122 NPSPRKLERWRRIAQEAAEQSERQIVPTIIDPLDFTSAIKQAIDSTTHCYICVARGNVPH 181 Query: 162 --NC--QIVFADETCG----------------SENSLEKLHAIAHIPN----------VA 191 NC ++ D G ++NS + + +P+ +A Sbjct: 182 LLNCLPKLEVIDPGDGQDKGDEGGFSTIRVTTNDNSETRPYIQNPVPDERSEGSKRSIIA 241 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I GPEGG+ +E E + F P+SLG RILR+ TA + A++L+ A Sbjct: 242 IATGPEGGWTPQEIEQAIAAGF-QPVSLGHRILRAVTAPLMALSLIAA 288 >gi|303233811|ref|ZP_07320465.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4] gi|302495245|gb|EFL54997.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4] Length = 241 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 89 IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +K+++ +Y+IQK+ E+G+ I R V+ + + DR + +++Q Sbjct: 84 LKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDKKWNKKKDRFEKIALESSKQSKRTV 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I + +KN + +VF + + S + + ++ I IGPEGG Sbjct: 144 IPEIEGLIKIN-EIKNTSNCLNLVFYE---NEKESFKSFLYNSKNKDINIFIGPEGGLSE 199 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + + L S F +SLG RILR+DTA + A++++Q GD Sbjct: 200 DNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQYELGD 239 >gi|255994330|ref|ZP_05427465.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC 49989] gi|255993043|gb|EEU03132.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC 49989] Length = 248 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 114/225 (50%), Gaps = 18/225 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRS-QTKQSDVQY 84 + H++ HVLR+ G ILL +GK+ E+ I + G+ ++ K+ +RS + ++ ++ Sbjct: 22 EDVHHIVHVLRLIAGSRILLSDGKN-EYEGVIEDIGGEVVKGKITDLNRSFRERKVELSL 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTISAAEQCD 139 I K +++++++K+ E+G+ + P I + T DR+ +SA EQ Sbjct: 81 IQGIPKAKKIEFIVEKAAELGVMKVFPAFMDRSIVKPTNKDDEKHDRLLKKALSACEQSK 140 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPNVAI 192 + + + ++ + D + +++ + G N+L+ + + ++A+ Sbjct: 141 RNRVMRVGKLREFKDIILDIDADIKLIAYENEEG--NTLKDVLSEYGNGNDACKAMSIAL 198 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGG E ++ S P+SLG ILR++TA + A +++ Sbjct: 199 VIGPEGGITDSEL-SIASANGYKPVSLGGSILRTETAGLVAASMI 242 >gi|303246600|ref|ZP_07332878.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans JJ] gi|302491940|gb|EFL51818.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans JJ] Length = 241 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 19/223 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SD 81 +G + + A VLR K G+ I F+G E L +I+ V + +VE ++RS + + Sbjct: 21 TGGEAAHCAKVLRKKAGEIIRAFDGLGREGLFRITAVSRD---RVELEARSLAEAPLPAT 77 Query: 82 VQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQC 138 Y+ + ++ R D+ ++K+VE+G I +Q + + ++AA+QC Sbjct: 78 RLYLAAGFSRSTRRDFFLEKAVELGAAGIFFWQAARSQGRMPEAPKESWQATLVAAAKQC 137 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-----ETCGSENSLEKLHAIAHIPNVAIL 193 LP + T+ C F E G + + +L + + Sbjct: 138 GAANLPEL---DTVSGGAAGLVAACSHHFDRRYLLWEAPGLDRRI-RLDDVGAPGEALFV 193 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +GPEGG E + PLSLG R+LR +TA +A +AL Sbjct: 194 LGPEGGLTDAEAAIFQDAGY-APLSLGERVLRFETAGLAVLAL 235 >gi|225850017|ref|YP_002730251.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) [Persephonella marina EX-H1] gi|225646741|gb|ACO04927.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) [Persephonella marina EX-H1] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 21/226 (9%) Query: 27 DQYHYL-------AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 D Y YL A V R+K GD I + + K +L+++ + K K + + ++ Sbjct: 12 DGYAYLTEDELKHAKVKRVKTGDRIEINDLKGNVYLTEVLEITKRY-IKCRIIEKIKVEE 70 Query: 80 SDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----TQNTHYNMDRVRTYTI 132 D + Y P + +++D +I+ ++G+ PVI+ T++ + + + Sbjct: 71 EDFRITLYQCMPNQLSKIDDIIEGVSQLGVYRFVPVISERSAVKTKDVLKKIKKWEKKAL 130 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 ++ +QC L I P LE + D + VF ++ E K + NV++ Sbjct: 131 NSIKQCKRLYPVIIENPVKLEDI--KSDDEGKFVFYEK---EEKRTVKEFLDKKLKNVSV 185 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +IGPEGG+ E + L F+ PL++G ILR +TA + + ++ Sbjct: 186 VIGPEGGFTEGEIKILQDKGFI-PLTMGKNILRMETAVITGICQIR 230 >gi|185179060|ref|ZP_02964799.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209047|gb|EDU06090.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 32/222 (14%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY----- 84 H++ +V+RM+ D I++ N ++ + I + + + + +D + Sbjct: 22 HHIKNVMRMRLHDEIIVINETQA-------FIAEIINLEPLHATIIKPYFNDCELSTKID 74 Query: 85 IF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILT 142 +F + IK N ++++QK+ E+G+ +I I + T N T +R+ T A EQ Sbjct: 75 LFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNNRISTIIKEACEQARRNY 134 Query: 143 LPFIYPPTTLEFLLK---NWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 L Y + LLK ++D N + +F ++ ++ +K +A++ Sbjct: 135 LVNYYEQFSFSELLKVLLSYDLILVAYENEKQIFLNDIFKENSTYQK---------IALV 185 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ EE L + V +SL ILRS+TA++ +A Sbjct: 186 IGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227 >gi|114567095|ref|YP_754249.1| hypothetical protein Swol_1575 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338030|gb|ABI68878.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 248 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQ 83 +Q ++ VLR+K GD + +F+G E+ ++ + I + E ++ T + ++ Sbjct: 21 EQTRHIEKVLRLKSGDIVKVFDGNGNEYQVRLQEKKQKI-LQAEILAQETTAEDLAINLT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH-YNMDRVRTYTISAAEQ 137 + ++ ++D++IQK+VE+G+ ++ P+ + R+ + + R + A +Q Sbjct: 80 LVQGIARSEKMDFIIQKAVELGVRSLIPLQSEHSVARFDKEKEGKKIKRWQKIAQEACKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAH-IPNVAILIG 195 C +P + P L+ D + + E +L + + ++IG Sbjct: 140 CGRNHIPEVKPILDFPALMAQIGDKPALLCYEQEREAYFRTLLREQRENFCTQGLFLIIG 199 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ E E + LGPR LR++TA++ A ++ Sbjct: 200 PEGGFSPAEVEIARRQGWFIA-GLGPRTLRTETASLLACGII 240 >gi|116328412|ref|YP_798132.1| hypothetical protein LBL_1752 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331141|ref|YP_800859.1| hypothetical protein LBJ_1528 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121156|gb|ABJ79199.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124830|gb|ABJ76101.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 12/214 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ +L + E N+ + NG EW+ ++ G S R + ++ K + I Sbjct: 22 EEVSHLKALRIFSEDKNLRILNGIGSEWIYEVK--GNS-RQGILKKTEVHVKPESISAIA 78 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 + I K NRL++++QK E+G+ + + +N+ R + A+ Q + LP Sbjct: 79 TAIPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSKRIFLPE 138 Query: 146 IYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 ++ P +L EFL + N I D SE E N ++GPEGG+ +E Sbjct: 139 VFVPVSLNEFLNLQENLNLSIYQFDPKGKSEPKPE------FFQNSIWIVGPEGGFREKE 192 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + + G IL+ +TA + A +L + Sbjct: 193 IRLLREKN-ILGVKAGNAILKIETAGIFAASLFR 225 >gi|49483825|ref|YP_041049.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MRSA252] gi|257425702|ref|ZP_05602126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428363|ref|ZP_05604761.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431000|ref|ZP_05607380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433688|ref|ZP_05610046.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436602|ref|ZP_05612646.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282904159|ref|ZP_06312047.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus C160] gi|282905986|ref|ZP_06313841.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus Btn1260] gi|282908896|ref|ZP_06316714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911215|ref|ZP_06319017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914384|ref|ZP_06322170.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M899] gi|282919353|ref|ZP_06327088.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus C427] gi|282924678|ref|ZP_06332346.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp. aureus C101] gi|283958341|ref|ZP_06375792.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus A017934/97] gi|293503458|ref|ZP_06667305.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp. aureus 58-424] gi|293510475|ref|ZP_06669181.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293531015|ref|ZP_06671697.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M1015] gi|295428155|ref|ZP_06820787.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus EMRSA16] gi|49241954|emb|CAG40649.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271396|gb|EEV03542.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275204|gb|EEV06691.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278430|gb|EEV09066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281781|gb|EEV11918.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283953|gb|EEV14076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282313513|gb|EFB43908.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp. aureus C101] gi|282317163|gb|EFB47537.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus C427] gi|282321565|gb|EFB51890.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M899] gi|282324910|gb|EFB55220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327160|gb|EFB57455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331278|gb|EFB60792.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus Btn1260] gi|282595777|gb|EFC00741.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus C160] gi|283790490|gb|EFC29307.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920283|gb|EFD97349.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M1015] gi|291095124|gb|EFE25389.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp. aureus 58-424] gi|291466839|gb|EFF09359.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295128513|gb|EFG58147.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus EMRSA16] gi|315195480|gb|EFU25867.1| hypothetical protein CGSSa00_07415 [Staphylococcus aureus subsp. aureus CGS00] Length = 250 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG SE + +L S T + LGPRILR++TA + A++ + Sbjct: 204 EGGL-SENEISLFS-NTSTVVGLGPRILRAETAPLYALSAI 242 >gi|331002887|ref|ZP_08326400.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413180|gb|EGG92554.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon 107 str. F0167] Length = 245 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 13/220 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW--LSKISYV-GKSIRFKVEYQSRSQTKQSDV 82 G +++ +VLRMK G+ +L+ GEW L KI + + KV + ++ Sbjct: 20 GSDVNHIVNVLRMKPGEELLI--SVKGEWDYLCKIEEIENDRVNLKVLESMEQRELPVNI 77 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K+++L+ +IQK++E+G+ I PV T+ + + R SAA+ Sbjct: 78 TLLQGIPKSDKLEMIIQKAIELGVSEIIPVKTKRVVVKIEEKKQASKVARWNAIAESAAK 137 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + P +++ L+ D +++ + G E + + L+ + N+A+ IG Sbjct: 138 QSKRSIIPKVSEPKSIDNALEIVKDFGVKLIPYENADGIEKTRKILNGMDKTKNIAVFIG 197 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 PEGG+ EE E ++ F ++LG RILR++TA +A ++ Sbjct: 198 PEGGFEEEEVEKINKSGFEV-ITLGKRILRTETAGLALLS 236 >gi|159039365|ref|YP_001538618.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora arenicola CNS-205] gi|157918200|gb|ABV99627.1| protein of unknown function DUF558 [Salinispora arenicola CNS-205] Length = 244 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 29/236 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + H+ A V R++ G+ +LL +G+ G + ++ VGK + V SR T + + Sbjct: 21 GAEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGKGV-LDVRITSRGYTDAPAHRLV 79 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRT-----YTI-SAAE 136 K R + +Q E+G+ I P T T + DR VR T+ A + Sbjct: 80 VVQGLAKGERGELAVQAMTEVGVDEIVP-WTAARSVTQWRGDRGVRAREKWVATVREATK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-----ENSLEKLHAIAHIPN-- 189 Q LP + + Q+ + E + E+L A +P+ Sbjct: 139 QARRAWLPVVAGTPD--------EATSQVAGRIAGAAAAYVLHEQAEERL-VTAELPDGG 189 Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG E T P+ LGP +LR+ TA VAA++++ A G W Sbjct: 190 EIVLVVGPEGGVAPAEL-TAFVAAGAQPVRLGPSVLRTSTAGVAALSVLAARLGRW 244 >gi|288800066|ref|ZP_06405525.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299 str. F0039] gi|288333314|gb|EFC71793.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299 str. F0039] Length = 242 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 32/241 (13%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-S 73 P + T S + H + VLR++ GD ++L +GK ++I + KS + EYQ + Sbjct: 10 PSALATNELPSEEAIHA-SKVLRLQSGDEMVLIDGKGSFHQAEIVNITKS---RCEYQIT 65 Query: 74 RSQ----TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 SQ T +++ +P K +R++++ +K E+G + + R+++ +R+ Sbjct: 66 HSQEFPKTWNNNIHLAIAPTKNIDRIEWLTEKITEIGFDELSFLNCRFSERRVVKNERLE 125 Query: 129 TYTISAAEQCDILTLP----------FI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +SAA+Q +P F+ P L+F+ ++ +I + C + N Sbjct: 126 RIIVSAAKQSRKSWMPQLNEMVSFKEFVSIPHKGLKFIAHCYNQFPKI----DLCSTLNK 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E +V IL+GPEG + +E E F + +SLG LR++TA + A+ + Sbjct: 182 EEIKE------DVLILVGPEGDFSVDEVEMALKNGFQS-ISLGENRLRTETAGLVAVTIA 234 Query: 238 Q 238 Q Sbjct: 235 Q 235 >gi|124007911|ref|ZP_01692612.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123986673|gb|EAY26463.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 238 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 7/237 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64 L +LF P Q S ++ + VLRMK+ D + L +GK +L+KI+ + K Sbjct: 4 LSQLFYS-PQTTHQQAILSEEESRHCVKVLRMKKNDELHLTDGKGNLFLAKIAEPHHKKC 62 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + V ++ + +P K +R+++ ++KSVE G+ I V ++ Sbjct: 63 VLDIVRTIEQTPAPLYHIHVAIAPTKNIDRIEWFVEKSVEFGIQQISFVQCNRSERKQVK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 + R++ +SA +Q +P I + + + N + A G L+ + A Sbjct: 123 LPRIQKIALSAMKQSLKFFMPQINEMVSFKSFMANLTPDETRYVAHLNEGERVFLKDV-A 181 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 H ILIGPEG + +E + F +SLG LR++TA +AA L+ + Sbjct: 182 QKH-QKYCILIGPEGDFTPDEVTLALNNEF-KAVSLGNSRLRTETAGIAACHLLNIV 236 >gi|51891646|ref|YP_074337.1| hypothetical protein STH508 [Symbiobacterium thermophilum IAM 14863] gi|51855335|dbj|BAD39493.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 243 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K +++ ++Q E+G+ V + + +R + AAEQ + Sbjct: 84 KGEKMELVLQHGTELGIAEFVAVAAARSVVRLDERKAAQRTERWQRIAREAAEQSRRGAV 143 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + PP T E + + + + +V + G E L A ++A+ IGPEGG + Sbjct: 144 PTVAPPHTWKEAVARIPEFDLALVAWE--GGGEPLRAALEARPEARDIAVFIGPEGGLTA 201 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE E L P++LGPRILR++TA +AA+A + G+W Sbjct: 202 EEVE-LARQAGAVPVTLGPRILRTETAPLAAVAAILYARGEW 242 >gi|313884114|ref|ZP_07817880.1| RNA methyltransferase, RsmE family [Eremococcus coleocola ACS-139-V-Col8] gi|312620561|gb|EFR31984.1| RNA methyltransferase, RsmE family [Eremococcus coleocola ACS-139-V-Col8] Length = 263 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 19/231 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQS--- 80 GD +H+L V+R K G I + + + I + K+ + +V+ + Sbjct: 20 EGDDFHHLVKVMRAKPGQVIQVVAANQVAYAASIQTIDKATCQLQVDQILQDNCLIELPL 79 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN-THYNMDRVRTYTISA 134 DV K ++LD++ QK E GM ++P+ + ++ N ++R+ A Sbjct: 80 DVTLACGISKNDKLDWIAQKGTEGGMACLQPLNLKRDVAKWQANKAAKRIERLEKIVKEA 139 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHI---- 187 A+Q +P + L +F+ + + +++ +ET G L K + + Sbjct: 140 AQQSHRRQIPQVNDCLNLIDFIRQVPNQAIKLIAFEETAKVGHHQVLAKTLSQLDLNQEV 199 Query: 188 -PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P + ++ G EGG E E L + F SLGPRILR++TA + A+ + Sbjct: 200 LPPLVMVFGSEGGLDIGEVEQLQAAGF-KACSLGPRILRAETAPIFALGAI 249 >gi|294782590|ref|ZP_06747916.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA] gi|294481231|gb|EFG29006.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA] Length = 235 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 8/217 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82 + +++ +V R ++GD + +G + E+L +I + K I+ K+ E ++ + ++ Sbjct: 18 DANDINHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLDIEL 76 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 S +K +++D IQK E+G+ I P+ + R DR T A +QC + Sbjct: 77 DAGISILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQCQGV 136 Query: 142 TLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 + ++ L LK++D +E ++ L L + +IG EGG+ Sbjct: 137 VPTVVDEIKKIDKLNLKDYDLVLVPYENEEEIFLKDILRNLKV--KPSKILYIIGAEGGF 194 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EE + L S +SLG RILR++TAA+ ++ Sbjct: 195 EKEEIDFLKS-QGAKIISLGKRILRAETAAIVTGGVI 230 >gi|297590879|ref|ZP_06949517.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|297575765|gb|EFH94481.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312437954|gb|ADQ77025.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] Length = 253 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 28 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 86 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 87 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 146 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 206 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245 >gi|94986461|ref|YP_594394.1| 16S ribosomal RNA methyltransferase RsmE [Lawsonia intracellularis PHE/MN1-00] gi|94730710|emb|CAJ54072.1| uncharacterized protein conserved in bacteria [Lawsonia intracellularis PHE/MN1-00] Length = 260 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 11/217 (5%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + H+L HVLR++ G I + +G+ E L + V K R + Y + + + + + Sbjct: 39 ESHHLLHVLRIQIGTEIHVLDGRGREGLFSVKEVIKD-RVSLSYINDWMHPEPTRKVVLA 97 Query: 88 P--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDILTL 143 K R ++ +K+ E+ AI +Q + + + I+ A+QC+ Sbjct: 98 AGWTKAARRGWLFEKAAELEAWAIWFWKAERSQFPLSEAKKESWQGQIIAGAKQCNNPWF 157 Query: 144 PFIYP-PTTLEFLLKNWDH-NCQI--VFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 P + P +E L+ N D C V + TCG L L + ++GPEGG Sbjct: 158 PSLQLFPNGIEELIYNVDTIGCDFRHVLVENTCGPAQPL-TLDMLKQTGLTICVLGPEGG 216 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +E L F++ L+LG R+LR +TAA+ + L Sbjct: 217 FTHKEILKLKEASFLS-LTLGDRVLRWETAAILCLGL 252 >gi|304373087|ref|YP_003856296.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma hyorhinis HUB-1] gi|304309278|gb|ADM21758.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma hyorhinis HUB-1] gi|330723289|gb|AEC45659.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyorhinis MCLD] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 13/152 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQCDILTL 143 +KT ++++QK+VE+G+ I P ++ + N + R + + AA+Q + Sbjct: 76 LKTKAFEFILQKAVELGVAKIIPFYSKNVEQKLGNDIDKKVQRWQEMVLHAAQQSFRNII 135 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + P +L N + N + + A E ENS + + LIGPEGG+ + Sbjct: 136 PKVEKPIKFHEVL-NIEKNFKFI-AHEKENEENS-----QLLFDSDSLFLIGPEGGFTED 188 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + F +SLG RILRS+TAA+ +A Sbjct: 189 EIAKAKAKNFKV-ISLGKRILRSETAAMFCLA 219 >gi|282883131|ref|ZP_06291730.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus lacrimalis 315-B] gi|281296943|gb|EFA89440.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus lacrimalis 315-B] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 34/221 (15%) Query: 27 DQYHYLAHVLRMKEG--------DNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + H+L +V+R+K D I+LFN KD + K S Sbjct: 19 ENLHHLKNVIRIKADEDFSVVFKDKIILFNLKDDMLIYKKEIFD------------SNEP 66 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMD----RVRTYTIS 133 + F +K ++ + +I+ E+G+ P+I R N +D R + S Sbjct: 67 PIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCVSNISDKVDKKIQRWQKIAKS 126 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNVAI 192 AA Q +P ++ P ++ + KN+ + + + DE ++ EKL N+AI Sbjct: 127 AAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDERNLFFKDIKEKLSK-----NLAI 181 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++GPEGG E E L +SLG RILR++T++V Sbjct: 182 IVGPEGGISKREIEVLKD---AHRISLGKRILRAETSSVVG 219 >gi|261880465|ref|ZP_06006892.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361] gi|270332804|gb|EFA43590.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 107/216 (49%), Gaps = 5/216 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFKV-EYQSRSQTKQSDVQY 84 D+ + VLR++ GD+I L +G+ + ++++ VGK + + E +++T + Sbjct: 21 DEAQHAIRVLRLQVGDDIYLMDGQGMFYHAEVTLSVGKHCSYIIKEELPQTKTWLGRIHL 80 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R+++M++K+ E+G+ + ++ ++++ DR+ +SA +Q Sbjct: 81 AIAPTKMMDRMEWMLEKATEIGVDEVTMLLCQFSERKKIRTDRLDKIIVSAMKQSRKAWK 140 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + T +F++++ I + E+L + + +L+GPEG + Sbjct: 141 PRLNDLTQFKDFIVQSRRGRKFIAHCYHDIEKVDLFEELQQVPQDEEITVLVGPEGDFSI 200 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E + + ++LG LR++TA + A+ + Q Sbjct: 201 DEVHFALEHGYES-IALGSSRLRTETAGLMAVTMGQ 235 >gi|57651970|ref|YP_186474.1| hypothetical protein SACOL1634 [Staphylococcus aureus subsp. aureus COL] gi|87161276|ref|YP_494232.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195386|ref|YP_500190.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221692|ref|YP_001332514.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus str. Newman] gi|258450594|ref|ZP_05698656.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262049150|ref|ZP_06022027.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30] gi|262051237|ref|ZP_06023461.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3] gi|282920126|ref|ZP_06327851.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus A9765] gi|284024636|ref|ZP_06379034.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus 132] gi|57286156|gb|AAW38250.1| conserved hypothetical protein TIGR00046 [Staphylococcus aureus subsp. aureus COL] gi|87127250|gb|ABD21764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202944|gb|ABD30754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374492|dbj|BAF67752.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|257861752|gb|EEV84551.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259160874|gb|EEW45894.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3] gi|259162819|gb|EEW47384.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30] gi|282594474|gb|EFB99459.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus A9765] gi|315198727|gb|EFU29055.1| hypothetical protein CGSSa01_09404 [Staphylococcus aureus subsp. aureus CGS01] Length = 250 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + +V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIEVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|317497460|ref|ZP_07955780.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895246|gb|EFV17408.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK GD + L NG D E+ S + + +I K+E +T+ Sbjct: 6 GSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELPVKIT 65 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 ++ + K ++++ ++QK+VE+G+ I PV + + + R T +SAA+Q Sbjct: 66 LYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCIVKLDAKKAAKKVSRWNTIALSAAKQ 125 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + + +L+ D +V +E G + S E + ++ I+IGP Sbjct: 126 AKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIGIIIGP 185 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ EE E L + T +SLG RILR++TA + ++++ Sbjct: 186 EGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSIL 225 >gi|317057269|ref|YP_004105736.1| hypothetical protein Rumal_2627 [Ruminococcus albus 7] gi|315449538|gb|ADU23102.1| protein of unknown function DUF558 [Ruminococcus albus 7] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 31/235 (13%) Query: 26 GDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 G ++ LRM+ GD + + GKD + ++ V + V S + + Sbjct: 20 GADAVHIGRSLRMRLGDELTVCCEGKD--YTCRLDSVSDEQCGLAVLSVSEGSGEPTVRV 77 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 ++ + K+++L+ ++QK+VE+G I PV+T ++ +R+ + AA+ Sbjct: 78 TLYQAVPKSDKLELIVQKAVELGAAEIVPVLTSRCVSRPDEKSYRKKRERLNKIALEAAK 137 Query: 137 QCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFAD-------ETCGSENSLEKLHAIAHIP 188 QC +P + + E K +H ++ + ET G E Sbjct: 138 QCGRSIVPTVGDIISAEECAKRLGEHELGLICYEKGGAPLSETVGRECR----------- 186 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 ++ I IG EGG+ E + + + +GPRI+R +TA +AA+A+V ++ G+ Sbjct: 187 DIGIFIGSEGGFDEAEVDKCRA-EGAKVIGMGPRIMRCETAPLAAIAVVMSLTGN 240 >gi|242279431|ref|YP_002991560.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio salexigens DSM 2638] gi|242122325|gb|ACS80021.1| protein of unknown function DUF558 [Desulfovibrio salexigens DSM 2638] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + +L VLR + GD + LF+G + L ++ + KS KV+ + + +D + + Sbjct: 22 GGEAKHLGKVLRTRVGDTVRLFDGCGRDGLFTVTEITKS---KVQLELNEEHFIADPRNL 78 Query: 86 FSPI---KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYTISAAEQCDI 140 I K++R +++++KSVE+ + + ++Q + ++AA+QC Sbjct: 79 TLAIGWNKSSRRNWILEKSVELQTHGLIFYQSEFSQGKVPAETKESWNEKLVAAAKQCGN 138 Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + P ++E L++ +F E ++N +++ + +IGPEGG Sbjct: 139 AWLPELQTVPGSIEKLIEFSASYDNKLFLYEK--ADNDTVPNNSVFAAESTLAVIGPEGG 196 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + E E L F P+SLG ILR +TAA+ M Sbjct: 197 FSPREAELLIENGF-KPVSLGSSILRWETAALLCMG 231 >gi|196248968|ref|ZP_03147668.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16] gi|196211844|gb|EDY06603.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16] Length = 282 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 SGD H++A V+RMK GD I + +I + Q + + ++ V+ Sbjct: 19 SGDDAHHIARVMRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136 YI + K + + +IQK E+G A R V+ + ++R + AAE Sbjct: 79 YIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET---CGSENSLEKLHAIAHIPNVAIL 193 Q + LP + P +L+ L+ + +FA E G SL L A P ++L Sbjct: 139 QAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQ-PGSSLL 197 Query: 194 --IGPEGGYHSEEKETLHSLPFVTPLS 218 GPEGG+ EE E L F S Sbjct: 198 AVFGPEGGFSREEAEQLKQSGFCRAAS 224 >gi|291559325|emb|CBL38125.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium SSC/2] Length = 245 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK GD + L NG D E+ S + + +I K+E +T+ Sbjct: 20 GSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELPVKIT 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 ++ + K ++++ ++QK+VE+G+ I PV + + + R T +SAA+Q Sbjct: 80 LYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAKKAAKKVSRWNTIALSAAKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + + +L+ D +V +E G + S E + ++ I+IGP Sbjct: 140 AKRGIIPEVREMKNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIGIIIGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ EE E L + T +SLG RILR++TA + ++++ Sbjct: 200 EGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSIL 239 >gi|331701362|ref|YP_004398321.1| ribosomal RNA small subunit methyltransferase E [Lactobacillus buchneri NRRL B-30929] gi|329128705|gb|AEB73258.1| Ribosomal RNA small subunit methyltransferase E [Lactobacillus buchneri NRRL B-30929] Length = 246 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 12/222 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQYIFS 87 H+L VLR + GD L + ++I + G + + + + DV + Sbjct: 24 HHLCRVLRAEVGDRFELVGDDHQVYEAEIGRLEGNQVAANIIKPLDHNVELPVDVTIVSG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 K N+ ++++QK+ E+G+ + P+ I ++ Q + R+ +SAAEQ Sbjct: 84 LSKGNKPEWIVQKATELGVAHVIFLPMDWSIVKWDQKATKKITRLNEVALSAAEQSHRNV 143 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILIGPEGG 199 +P + + L+ L + D + Q+V +E+ G E +L K + A +A + GPEGG Sbjct: 144 VPTVAYLSGLDALFQ-LDFDTQLVAYEESAKQGEETNLVKAVRQTASGGTMAAVFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E L FV LGPRILR++TA + ++ V + Sbjct: 203 VSPAEVTQLVDHDFVLA-GLGPRILRTETAPLYFLSAVSTLT 243 >gi|161509805|ref|YP_001575464.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848608|ref|ZP_06789354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A9754] gi|160368614|gb|ABX29585.1| hypothetical protein USA300HOU_1578 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824634|gb|EFG41057.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A9754] gi|320140538|gb|EFW32392.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus MRSA131] gi|320144075|gb|EFW35844.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus MRSA177] Length = 253 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + +V+ + + DV Sbjct: 28 HHITNVMRYDVGSKIILTFNDQTVYLCEIADI-TSDKIEVDLKEKQNINTELPVDVTICS 86 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 87 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 146 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 206 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245 >gi|72161244|ref|YP_288901.1| hypothetical protein Tfu_0840 [Thermobifida fusca YX] gi|71914976|gb|AAZ54878.1| Conserved hypothetical protein 46 [Thermobifida fusca YX] Length = 248 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 14/230 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 G + + A V R+ G+ + L +G ++ VG+ +I V+ + + + Sbjct: 22 GAEGRHAATVRRIAVGEPVDLVDGAGHRARCVVTAVGRDTITCAVQERVFEAEPRPRITV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAAEQC 138 + + K +R + ++ E G+ A+ P ITR+ + ++ + R+ +AA+Q Sbjct: 82 VQALPKGDRGELAVEVMTEAGVDAVVPWQAERCITRWRGDRVARSLTKWRSAARAAAKQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSL---EKLHAIAHIPNVAILI 194 +P + P ++ + IV +E + L E+L A + +++ Sbjct: 142 RRSRIPEVAEPVGKAGVVALLESATLGIVLHEEGAVRLSQLPLPEELFGPAG--HAVLVV 199 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG+ E + L LGP +LR+ TA VAA+A++QA CG W Sbjct: 200 GPEGGFSDAELAAFEDAGALRAL-LGPTVLRTSTAGVAALAVLQARCGRW 248 >gi|224060885|ref|XP_002300283.1| predicted protein [Populus trichocarpa] gi|222847541|gb|EEE85088.1| predicted protein [Populus trichocarpa] Length = 212 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 11/209 (5%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY----IFS 87 + VLR+ D + LFNGK G I + ++ V + ++ F Sbjct: 1 MTKVLRLGTNDRVELFNGKGGLIEGCIERIDRTGLDFVALEDPKLVPPLSTKWHVYAAFG 60 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDILTLPFI 146 +K +R D++++K E+G ++ P++T + + N +DR R ++A +Q L + Sbjct: 61 TLKGDRADWLLEKCTELGAHSVTPLLTERSPSISENRVDRFRRVILAATKQSQRLHEMIL 120 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 PPT + LL ++ F T G+ + L + + +++GPEG + +E++ Sbjct: 121 NPPTKIVGLLP----LSKLSFL-ATAGATPVVSVLTSSRKESSGLMIVGPEGDF-TEKEV 174 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + + LGP LR +TA +A +A Sbjct: 175 NMMMKAGASAVGLGPHRLRVETATMALLA 203 >gi|226360380|ref|YP_002778158.1| 16S ribosomal RNA methyltransferase RsmE [Rhodococcus opacus B4] gi|226238865|dbj|BAH49213.1| hypothetical protein [Rhodococcus opacus B4] Length = 253 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 33/239 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQ 83 G + + A V R+ G+ I+L +G+ G ++++ GK R ++ R Q V Sbjct: 22 GPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAGKD-RLELTVHDRRQVSAPSPSVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQ-NTHYNMDRVRTYTISAAEQ 137 + + K R + ++ + E G+ AI P + R+ + R R+ ++AA+Q Sbjct: 81 VVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVAKGVARWRSAALAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLH-----AIAHIP-- 188 +P + E H + A E G + LH +A +P Sbjct: 141 SRRAIVPAVS-----EL------HRTAGMLAVVREVIGRGGVVAVLHEAATQGLAELPLR 189 Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG +E L V P+ LGP +LR+ TAA A+ + + W Sbjct: 190 SAAEIVLVVGPEGGISEDEITALTEAGAV-PVLLGPHVLRTSTAAAVALGAIGVLTDRW 247 >gi|221140003|ref|ZP_03564496.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|269941067|emb|CBI49451.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|302751407|gb|ADL65584.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus str. JKD6008] gi|329314253|gb|AEB88666.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] Length = 250 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + +V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIEVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKAAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|167767378|ref|ZP_02439431.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1] gi|167711353|gb|EDS21932.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1] Length = 245 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 G +++ +VLRMK GD + L NG D E+ S + + +I K+E +T+ Sbjct: 20 GSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELPVKIT 79 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 ++ + K ++++ ++QK+VE+G+ I PV + + + R T +SAA+Q Sbjct: 80 LYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAKKAAKKVSRWNTIALSAAKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + + +L+ D +V +E G + S E + ++ I+IGP Sbjct: 140 AKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIGIIIGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG+ EE E L + T +SLG RILR++TA + ++++ Sbjct: 200 EGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSIL 239 >gi|257455067|ref|ZP_05620310.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus SK60] gi|257447539|gb|EEV22539.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus SK60] Length = 294 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/281 (21%), Positives = 116/281 (41%), Gaps = 53/281 (18%) Query: 7 LKRLFVDFP--LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F + P L + + + D +H+ VLR G+ L F+G+ GE+ + V K Sbjct: 1 MRRFFYNQPNLLQVGSTVPLTEDIFHHWCKVLRASMGEQALFFDGQGGEYTVTLKDVTKK 60 Query: 65 IRFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 ++ ++ V + R+DY IQK+ E+G+ +I+ + +++ + Sbjct: 61 QALVTINDFNPINRALPFTVNIALVMSRGERMDYAIQKATELGVSSIQLLTSQHGEVRLK 120 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE------------------FLLKN 158 + + +SA EQC + +P + P + L Sbjct: 121 ADQADKKLAHWQQIAVSACEQCGLNIVPNLLAPKAVSDWIDEPAGVPTSTNVTKLILAVP 180 Query: 159 WDHNCQIVFADETCGSE--------NSLEKL-------HAIAHIPN---------VAILI 194 D + + ++ GS+ N +E + + + HI N +LI Sbjct: 181 PDDSGVVTSCNQIEGSDIEHSDIEHNDIEPIAPYTPYPNPLPHITNQFRQCSLAQFWLLI 240 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 G EGG+ ++E F+ P +G R+LR++TA V A++ Sbjct: 241 GAEGGFSAQEITQAIERGFI-PWQIGERVLRTETAPVVALS 280 >gi|304380834|ref|ZP_07363494.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340561|gb|EFM06495.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 253 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + +V+ + + DV Sbjct: 28 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIEVDLKEKQNINTELPVDVTICS 86 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 87 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKAAKKIERWQKIIKEAAEQSYR 146 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 206 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245 >gi|304439565|ref|ZP_07399470.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371944|gb|EFM25545.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 227 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 14/152 (9%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMDR--VRTYTI--SAAEQCDILTL 143 IK ++ + ++K+ E+G+ +I P+I R N D+ +R I SAA+Q + Sbjct: 72 IKQDKFELALEKTTEVGVSSITPIIFKRTVVNIKGKEDKKLLRWQKILESAAKQSKRDII 131 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHIPNVAILIGPEGGYH 201 P I P LE N + ++ E G+EN + L I ++ILIGPEGG+ Sbjct: 132 PSINNPEKLE----NINFKGTLIVPYE--GAENLYIDDVLKNTKGIEEISILIGPEGGFD 185 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E L ++ ++LG RILR++TAA+ A Sbjct: 186 ESEIEYLKTMG-CKIVTLGTRILRAETAAIVA 216 >gi|253733172|ref|ZP_04867337.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|297207704|ref|ZP_06924139.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911785|ref|ZP_07129228.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|253728712|gb|EES97441.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|296887721|gb|EFH26619.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886031|gb|EFK81233.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 253 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 28 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 86 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 87 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 146 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 206 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245 >gi|325270090|ref|ZP_08136697.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM 16608] gi|324987391|gb|EGC19367.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM 16608] Length = 259 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 24/228 (10%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIK- 90 VLR+KEGD + L +G+ + ++++ Q+ QT+ + + +P K Sbjct: 28 RVLRLKEGDELFLMDGEGCFYRAEVALATTKKCIYAIRQTLRQTRAWRGRIHLAIAPTKD 87 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 R+++M +K+ E+G + + ++++ DR+ ISA +Q P + P Sbjct: 88 MGRMEWMAEKATEVGFDVLSFLDCKFSERKTLRTDRIEKIVISAVKQSRKGWKPAVNPMM 147 Query: 151 TLEFLLKNWDHN-----CQI--------VFADETCGS---ENSLEKLHAIAHIPNVA--- 191 + +++ N C F+ +C S +S ++ A P+ A Sbjct: 148 SFRSFIEHCPDNGRKYICHCYPEISRADFFSAVSCVSPAVRSSQDRRQTDADTPSSAEDL 207 Query: 192 -ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +LIGPEG + +E + F + ++LG LR++TA ++A+ + Q Sbjct: 208 TVLIGPEGDFSIDEVRLAMAHGFES-VTLGNSRLRTETAGLSAVMMSQ 254 >gi|282916847|ref|ZP_06324605.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus D139] gi|283770653|ref|ZP_06343545.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus H19] gi|282319334|gb|EFB49686.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus D139] gi|283460800|gb|EFC07890.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus H19] Length = 250 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNNQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|317128303|ref|YP_004094585.1| hypothetical protein Bcell_1591 [Bacillus cellulosilyticus DSM 2522] gi|315473251|gb|ADU29854.1| protein of unknown function DUF558 [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 13/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++R F++ + + SGD +++ V+RM++GDNI+ + IS + S I Sbjct: 1 MQRYFINPQMFHEDHVVISGDDAKHISRVMRMEQGDNIICCTTSGVCYECVISEMKDSYI 60 Query: 66 RFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQ 118 +E Q S+S +V K ++ +++IQK E+G A R ++ + Sbjct: 61 YATIEKQESKSVELPVNVTIGHGLPKGDKFEWVIQKGTELGAKNFLPFEAERSIVKLDKK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +DR AAEQ LP + LL + D ++ A E + Sbjct: 121 KADKKIDRWNKIAKEAAEQSHRQQLPKVMEVQRFSQLLDHVDGYSYVLVAYEEAAKNDEK 180 Query: 179 EKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L ++ ++ L GPEGG+ E L + LGPRILRS+TA + + Sbjct: 181 SQLFSVLQEVKKGESILFLFGPEGGFSDREINELTKKGALI-CGLGPRILRSETAPLYGL 239 Query: 235 ALV 237 + Sbjct: 240 TAI 242 >gi|317125267|ref|YP_004099379.1| hypothetical protein Intca_2142 [Intrasporangium calvum DSM 43043] gi|315589355|gb|ADU48652.1| protein of unknown function DUF558 [Intrasporangium calvum DSM 43043] Length = 247 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 21/226 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR---FKVEYQSRSQTKQSD 81 GD+ + A V+R++ G+ + +G L++ V + S+R +V ++ T+ Sbjct: 26 GDEGRHAATVVRLRPGERYYVADGVGRRALAEAETVDRTSVRGRVLEVVDEAEPATRFVL 85 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAA 135 VQ + K +R + I+ + E+G+ A R ++ + ++ + T AA Sbjct: 86 VQALA---KGDRDEQAIEAATELGVDEVVPWAAERSIVVWRGERAAKSLAKWMTVVTRAA 142 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA--HIPNVAIL 193 +Q +P P L L+ + E + E L A+A +V ++ Sbjct: 143 KQSRRARIPLTSSPVDLAALIDRVRGAALTLVLHE-----EATEPLAAVAVAESGDVLVV 197 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +GPEGG E E L + P+ LGP LRS TA AA+A++ A Sbjct: 198 VGPEGGISGRELEALVA-AGARPVRLGPTTLRSSTAGPAALAVLNA 242 >gi|319943087|ref|ZP_08017370.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599] gi|319743629|gb|EFV96033.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599] Length = 275 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 37/247 (14%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDVQYIF 86 H+L VLR GD I +F+G+ W ++++ + ++ + + + + Q + Sbjct: 31 HHLLRVLRRGIGDEIEVFDGQGRCWHAQVASTKPATVTLQAALPAEPPPRLRLGLAQCLS 90 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 + ++D+ I+K+VE+G+ I P+++ + + + ++AA QC Sbjct: 91 T---AEKMDWTIEKAVELGVSHIVPLLSARSVVKLDGARAEKRVQHWQRLVVAAAMQCGR 147 Query: 141 LTLPFIYP----PTTLEFLLKNWDHNCQIVFADETCGS--------------------EN 176 LP I P T L L H + V + S + Sbjct: 148 SRLPEIAPIQPVGTWLASLPAPQAHERRWVLSPLAESSLMAQASALAAQTGTPLAWDQDQ 207 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + A P +L GPE G E E + + P LGPR+LR++TA + + + Sbjct: 208 PIDAAASEAATPTAWLLCGPESGLAETEVEQALAQGW-QPALLGPRVLRTETAGLVGLTV 266 Query: 237 VQAICGD 243 +QA GD Sbjct: 267 LQAALGD 273 >gi|21283258|ref|NP_646346.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MW2] gi|49486412|ref|YP_043633.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MSSA476] gi|21204698|dbj|BAB95394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244855|emb|CAG43316.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|329733247|gb|EGG69584.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus 21193] Length = 250 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|148380908|ref|YP_001255449.1| hypothetical protein CBO2956 [Clostridium botulinum A str. ATCC 3502] gi|153934252|ref|YP_001385216.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A str. ATCC 19397] gi|153934969|ref|YP_001388685.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A str. Hall] gi|148290392|emb|CAL84519.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152930296|gb|ABS35796.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str. ATCC 19397] gi|152930883|gb|ABS36382.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str. Hall] Length = 252 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 38/259 (14%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD I + N + E+ +I + K S+ Sbjct: 3 KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + Y++ + K+ ++D ++QKS E+G+ I PVIT + Sbjct: 63 KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLKEF 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +DR + A +QC +P + P LL+ IV E S E Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYE------SKENY 176 Query: 182 HAIAHIPNVAILIGPEGGYHSE---------------EKETLHSLPFVTP--LSLGPRIL 224 + I N+ Y E E+ + +L + ++LGPRI Sbjct: 177 GIKSLIKNIE--------YEKENIKNIGIIIGPEGGFEESEIRALEEIKAQIVTLGPRIF 228 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA + +++ GD Sbjct: 229 RTETAGIVCASIISYELGD 247 >gi|262068260|ref|ZP_06027872.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum ATCC 33693] gi|291377998|gb|EFE85516.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum ATCC 33693] Length = 235 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 24/220 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY--IF 86 +++ +V R ++GD + +G + E+L +I + K I+ K+ + ++ DV+ Sbjct: 23 NHIKNVFRKEKGDILRAVDGFN-EYLCEIEEISDKEIKLKI-IEKKADKFSLDVKLDAAI 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 S +K +++D IQK E+G+ I P+ + R DR T A +QC + Sbjct: 81 SILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTIAKEALKQCQGVVPTV 140 Query: 146 IYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPE 197 + ++ L K++D N + VF + L + P+ + LIG E Sbjct: 141 VDEIKKIDKLDFKDYDLILVPYENEKEVFLKDI---------LRNLKVKPSKILYLIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GG+ EE E L S +SLG RILR++TAA+ ++ Sbjct: 192 GGFEKEEIEFLESRG-AKIISLGKRILRAETAAIVTGGVI 230 >gi|328554279|gb|AEB24771.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus amyloliquefaciens TA208] gi|328912676|gb|AEB64272.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens LL3] Length = 256 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS-IRFKV-EYQSRSQTKQSD 81 +G+ H++A+V+RM G I+ + KDG E L + V K I V E+ ++ Sbjct: 22 TGEDVHHIANVMRMSAGGRIICCS-KDGHEALCLLKEVSKDHISCSVAEWTGENRELPLK 80 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135 ++ K ++L+++IQK E+G R V+ + +R AA Sbjct: 81 IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAA 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVA 191 EQ +P + T LL+ ++ C + + + + E +L ++ ++ Sbjct: 141 EQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL 200 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E + L V LGPRILR++TA + A++ V Sbjct: 201 IVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPLYALSAV 245 >gi|313678552|ref|YP_004056292.1| hypothetical protein MBOVPG45_0458 [Mycoplasma bovis PG45] gi|312950389|gb|ADR24984.1| conserved hypothetical protein TIGR00046 [Mycoplasma bovis PG45] Length = 227 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 17/158 (10%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILT 142 IK R +++IQK+ E+G+ I P+ ++Y T +DR +AAEQ T Sbjct: 75 IKIKRFEWLIQKATELGVSRIIPMNSKYVDQTIVKHEFSKKIDRFNEIIKNAAEQSFRNT 134 Query: 143 LPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P + T E +L N D + + ++ S+ ++K+ N +++GPEGG Sbjct: 135 VPELESIKTFEEIILNNQDKKIYVAYENKELDSQ--IDKIDT-----NSILIVGPEGGLS 187 Query: 202 SEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E + L + F+ +SLG ILR++TA + ++ V+ Sbjct: 188 DSEVDFALKNNCFI--VSLGKTILRAETACIYMLSNVR 223 >gi|254432379|ref|ZP_05046082.1| conserved hypothetical protein [Cyanobium sp. PCC 7001] gi|197626832|gb|EDY39391.1| conserved hypothetical protein [Cyanobium sp. PCC 7001] Length = 271 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 27/258 (10%) Query: 3 IHSHLKRLFVDFPLCIKTQG---KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI- 58 + L+RL VD PL + G + HYL VLR+++GD + +G W + + Sbjct: 1 MGRELRRLLVD-PLRLTEAGGLLPLERGELHYLRRVLRLRQGDRFAVVDGLGRLWSANLQ 59 Query: 59 ---------SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 + + + +E R ++ +P + + + +++ + E+G+ I Sbjct: 60 TDPARQEGAALLEQPFERPLEQGPRPAPP---LRLAIAPPRRDG-EVLLRMACELGIDQI 115 Query: 110 RPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168 + + R + +R R+ A EQC+ L LP P + ++ A Sbjct: 116 QWLSAERSVVDAPPREERQRSVLREALEQCERLWLPRSSGPEPAAAWFARQPEDQLLLLA 175 Query: 169 DETCGSENSL----EKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 C L E+ + P+ V + +GPEGG+ E+E ++ +SLG Sbjct: 176 TTRCSDAAPLLEVLEREGSKVASPDSSTVTLAVGPEGGWSPLEQEQALERGWLA-VSLGD 234 Query: 222 RILRSDTAAVAAMALVQA 239 ILR+ TAAVA + L+ A Sbjct: 235 GILRTSTAAVAGVTLLSA 252 >gi|282881481|ref|ZP_06290152.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS 5C-B1] gi|281304645|gb|EFA96734.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS 5C-B1] Length = 242 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 15/213 (7%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQYIFSPIKT 91 VLR+ GD + L +G G + I + + E Q + ++ + + +P KT Sbjct: 29 VLRLSSGDEMFLMDGV-GNFYRAIVTIASTKHCFYEIQETLPQQKSWRGHIHLAIAPTKT 87 Query: 92 -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 R+++M++K E+G I + ++++ R+ I+A +Q P + P Sbjct: 88 MERIEWMVEKMTEIGFDEITFLNCQFSERKQIRPIRLEKIVIAAMKQSRKPWKPVVNPMV 147 Query: 151 TLEFLLKNWDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + KN+ H+ I ++ L LH I ++ IL+GPEG + +E Sbjct: 148 SY----KNFIHHQTTGHRYIAHCYPEIERKDLLTTLHQITDDDDITILVGPEGDFSVDEV 203 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + F + +SLG LR++TA + A+A+ Q Sbjct: 204 KFAEQAGFES-ISLGKNRLRTETAGLMAVAMTQ 235 >gi|168181642|ref|ZP_02616306.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf] gi|237796409|ref|YP_002863961.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum Ba4 str. 657] gi|182675193|gb|EDT87154.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf] gi|229262623|gb|ACQ53656.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Ba4 str. 657] Length = 252 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 38/259 (14%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD I + N + E+ +I + K S+ Sbjct: 3 KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + Y++ + K+ ++D ++QKS E+G+ I PVIT + Sbjct: 63 KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLKEF 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +DR + A +QC +P + P LL+ IV E S E Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEETKGMDLIVVPYE------SKENY 176 Query: 182 HAIAHIPNVAILIGPEGGYHSE---------------EKETLHSLPFVTP--LSLGPRIL 224 + I N+ Y E E+ + +L + ++LGPRI Sbjct: 177 GIKSLIKNIE--------YEKENIKNIGIIIGPEGGFEESEIRALEEIKAQIVTLGPRIF 228 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA + +++ GD Sbjct: 229 RTETAGIVCASIISYELGD 247 >gi|303237747|ref|ZP_07324307.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN] gi|302482199|gb|EFL45234.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN] Length = 239 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 18/222 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ-SRSQTKQSDVQY 84 ++ + VLR+K GD I L +G+ + ++++ K + ++ + +T S + Sbjct: 21 EEATHAVRVLRLKSGDEIYLMDGEGTFFQAEVTLASQKHCLYNIKKAIPQEKTWNSKIHL 80 Query: 85 IFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K R++++++K E+G I + ++++ DR+ +SA +Q Sbjct: 81 AIAPTKDIGRIEWLVEKVTEVGFDEISFLNCKFSERKSLRSDRIERIVVSAMKQSRKPWK 140 Query: 144 PFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSLEKLHAIAHI-----PNVAILIGP 196 P + L N+D N A C N +EK+ I N+ +LIGP Sbjct: 141 PIVNE-------LINFDDFINKDFKGAKYICHCYNEIEKIDFFNSINLQTTENITVLIGP 193 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EG + EE + + + ++LG LR++TA +AA+ + Sbjct: 194 EGDFSIEEVRKALANGYQS-VTLGNSRLRTETAGLAAVMMAN 234 >gi|170289238|ref|YP_001739476.1| hypothetical protein TRQ2_1449 [Thermotoga sp. RQ2] gi|170176741|gb|ACB09793.1| protein of unknown function DUF558 [Thermotoga sp. RQ2] Length = 222 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 111/214 (51%), Gaps = 22/214 (10%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + H++ V+R+KEGD I +GK + + S K+ ++ + + ++ + Sbjct: 20 EAHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKTAAARIVKAEEKEKEPTEKLSVV 78 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLP 144 PI + R ++I+K VE+G+ I ++ ++ H ++D+ + AA+QC Sbjct: 79 VPIGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKAKIVVREAAKQCK----R 132 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203 +++P + L+ + + ++ D S+N L+ A++ ++ +++GPEGG+ + Sbjct: 133 YLFPKVSF---LEKLEFSGNVITLD-LDASQNLLD-----ANLEGSITVVVGPEGGFSEK 183 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E+E L S T +SLG +ILR +TAA+ + + Sbjct: 184 ERELLRSST--TIVSLGKKILRFETAAILTVGYI 215 >gi|317490537|ref|ZP_07949014.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316910352|gb|EFV31984.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 291 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 15/220 (6%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 A VLR+ G++I + + + +I+ ++ Q ++ V + K + Sbjct: 33 ARVLRLAPGEHIAVVDAAQDYFECEIAAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGD 92 Query: 93 RLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +++ +I+ + E+G+ A P+ I R + R R SAA Q P + Sbjct: 93 KMETVIRHATELGVSAFVPMACERSIVRLDARKAAARTQRWRAIAKSAAMQSGQRVCPEV 152 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIPNVAILIGPEG 198 P L + + H ++ E + +EK A+ +A+++GPEG Sbjct: 153 GEPMALADVCASLAHATAVLVCWEEAPLDARIEKALERGLRLDRALPENARIAVVVGPEG 212 Query: 199 GYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAMALV 237 G E + L + P + +SLG ILR++TA + A ALV Sbjct: 213 GLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALV 252 >gi|299822883|ref|ZP_07054769.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601] gi|299816412|gb|EFI83650.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601] Length = 252 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 13/219 (5%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYIF 86 +H+LA V+RM GD + + + ++I V K++ VE+Q+ + + Sbjct: 24 HHHLARVMRMTTGDQVYIVFADNQFCTAEIVSVSEDKTLLKLVEWQTNNPELPIAITIAS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 K ++L++++QK E+G + R ++ + T +R++ AAEQ Sbjct: 84 GLPKGDKLEWIVQKGTELGADSFIAFPSDRSIVKWDAKKTEKKRERLQKIAKEAAEQSHR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAILI--GP 196 + +P I + + L + +V A E N L ++ A P + +L+ GP Sbjct: 144 VHVPTITTLASGKQLAERCGEYDAVVVAYEESAKANEKAVLASVFAALRPGMRLLVIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG SE++ L LGPRILR++TA + +A Sbjct: 204 EGGI-SEQEIQLFKAQKAHFAGLGPRILRTETAPLYLLA 241 >gi|15924567|ref|NP_372101.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus Mu50] gi|15927157|ref|NP_374690.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus N315] gi|148268061|ref|YP_001247004.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus JH9] gi|150394129|ref|YP_001316804.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus JH1] gi|156979895|ref|YP_001442154.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus Mu3] gi|253316052|ref|ZP_04839265.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006363|ref|ZP_05144964.2| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793653|ref|ZP_05642632.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258411047|ref|ZP_05681327.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258420149|ref|ZP_05683104.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258437409|ref|ZP_05689393.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443615|ref|ZP_05691954.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446822|ref|ZP_05694976.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448736|ref|ZP_05696848.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258453553|ref|ZP_05701531.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269203205|ref|YP_003282474.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus ED98] gi|282893078|ref|ZP_06301312.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8117] gi|282928210|ref|ZP_06335815.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A10102] gi|296275801|ref|ZP_06858308.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MR1] gi|13701375|dbj|BAB42669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247348|dbj|BAB57739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147741130|gb|ABQ49428.1| protein of unknown function DUF558 [Staphylococcus aureus subsp. aureus JH9] gi|149946581|gb|ABR52517.1| protein of unknown function DUF558 [Staphylococcus aureus subsp. aureus JH1] gi|156722030|dbj|BAF78447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787625|gb|EEV25965.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257840197|gb|EEV64661.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257843860|gb|EEV68254.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257848614|gb|EEV72602.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851021|gb|EEV74964.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854397|gb|EEV77346.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858014|gb|EEV80903.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257864284|gb|EEV87034.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075495|gb|ACY11468.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus ED98] gi|282590017|gb|EFB95099.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A10102] gi|282764396|gb|EFC04522.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8117] gi|285817259|gb|ADC37746.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus 04-02981] gi|312829965|emb|CBX34807.1| RNA methyltransferase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129856|gb|EFT85846.1| hypothetical protein CGSSa03_02183 [Staphylococcus aureus subsp. aureus CGS03] gi|329727099|gb|EGG63555.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus 21172] Length = 250 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|225175075|ref|ZP_03729071.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT 1] gi|225169251|gb|EEG78049.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT 1] Length = 246 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 7/205 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 D H+L VLR G + L + K + I+ V +R ++ ++ Sbjct: 21 DDAHHLLRVLRASVGQEVELCDDKGSCRRAVIAGVDHGEVRCRLGHELPDSEAVIRFYLA 80 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTISAAEQCDI 140 F +K + ++++QK+ E+G P + R + R + AA Q Sbjct: 81 FGVLKGEKTEFILQKATELGAAGFFPFTSERSVVRPDKKAEKIQKRWQKIIHGAAAQSRR 140 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P + PP +L ++VF E+ + L + V ++ GPEGG+ Sbjct: 141 AIIPQLNPPCKWPDVLDLSKTFDKVVFFWESEEDRPLAKSLEGCSRGDRVLLITGPEGGF 200 Query: 201 HSEEKETLHSLPFVTPLSLGPRILR 225 ++E L L + P++LGPRILR Sbjct: 201 SAKEAAALGKLG-IEPVTLGPRILR 224 >gi|170756725|ref|YP_001782589.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B1 str. Okra] gi|226950382|ref|YP_002805473.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A2 str. Kyoto] gi|169121937|gb|ACA45773.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum B1 str. Okra] gi|226842685|gb|ACO85351.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A2 str. Kyoto] Length = 252 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 12/246 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD I + N + E+ +I + K S+ Sbjct: 3 KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + Y++ + K+ ++D ++QKS E+G+ I P+IT + Sbjct: 63 KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSL 178 +DR + A +QC +P + P LL+ IV + E G ++ + Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKSLI 182 Query: 179 EKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + +I N+ I+IGPEGG+ E L + ++LGPRI R++TA + +++ Sbjct: 183 KNIEYKKENIKNIGIIIGPEGGFEESEIRALEEIK-AQIVTLGPRIFRTETAGIVCASII 241 Query: 238 QAICGD 243 GD Sbjct: 242 SYELGD 247 >gi|294670651|ref|ZP_06735527.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307621|gb|EFE48864.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 16/150 (10%) Query: 102 VEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155 +E+G+ I R V+ + + R + ISA EQ T+P + P Sbjct: 1 MELGVNEIIPVESARSVVKLSGERAEKRVSRWQEIVISACEQSGRNTVPAVRPLLPFRRA 60 Query: 156 LKNW-DHNCQIVFA-DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 L+N D +++ + + +C +L+++ +V ++GPEGG+ EE+ F Sbjct: 61 LQNLPDAEAKLLMSLNRSC-------RLNSLPPPRSVVFMVGPEGGWTEEEERFAQEAGF 113 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +SLG R+LR++T A+AA+A +Q + GD Sbjct: 114 QA-VSLGRRVLRTETTALAAIAAMQTLWGD 142 >gi|253732230|ref|ZP_04866395.1| protein of hypothetical function DUF558 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724019|gb|EES92748.1| protein of hypothetical function DUF558 [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 253 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 14/220 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQS-DVQYIFS 87 H++ +V+R G I+L +L +I+ + I ++ + T+ S DV Sbjct: 28 HHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELSVDVTICSG 87 Query: 88 PIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ L Sbjct: 88 LIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRL 147 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPE 197 +P I + L+ + D+ I+ A E + L + L V ++ GPE Sbjct: 148 VIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPE 207 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GG E + T + LGPRILR++TA + A++ + Sbjct: 208 GGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245 >gi|302333253|gb|ADL23446.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus JKD6159] Length = 250 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDQIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|168179387|ref|ZP_02614051.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum NCTC 2916] gi|182669772|gb|EDT81748.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum NCTC 2916] gi|322807273|emb|CBZ04847.1| ribosomal RNA small subunit methyltransferase E [Clostridium botulinum H04402 065] Length = 252 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 38/259 (14%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD I + N + E+ +I + K S+ Sbjct: 3 KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + Y++ + K+ ++D ++QKS E+G+ I P+IT + Sbjct: 63 KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +DR + A +QC +P + P LL+ IV E S E Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYE------SKENY 176 Query: 182 HAIAHIPNVAILIGPEGGYHSE---------------EKETLHSLPFVTP--LSLGPRIL 224 + I N+ Y E E+ + +L + ++LGPRI Sbjct: 177 GIKSLIKNIE--------YEKENIKNIGIIIGPEGGFEESEIRALEEIKAQIVTLGPRIF 228 Query: 225 RSDTAAVAAMALVQAICGD 243 R++TA + +++ GD Sbjct: 229 RTETAGIVCASIISYELGD 247 >gi|283470856|emb|CAQ50067.1| protein YqeU [Staphylococcus aureus subsp. aureus ST398] Length = 250 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +++ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEVADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|300173195|ref|YP_003772361.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc gasicomitatum LMG 18811] gi|299887574|emb|CBL91542.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc gasicomitatum LMG 18811] Length = 247 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAA 135 +V I SP+K +R D+++QK+ E+G+ I + + + R++ +AA Sbjct: 78 NVTIIVSPLKNDRSDWLVQKATELGVNRIVFAEMTRTVADWKKQEAKKAVRLQKIAQAAA 137 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAI 192 EQ L +P I T L + +V +E+ + + +I +P +V + Sbjct: 138 EQSHRLLVPQIQFLTWQNVL--DLPKQMGLVAWEESARTGEVATLVKSINEVPIDTDVNL 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + GPEGG E E L + P LGPRILR++TA + A++ + + Sbjct: 196 VFGPEGGLTILEIEALARHEYY-PAGLGPRILRAETAPLYALSAISVL 242 >gi|323443249|gb|EGB00867.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus O46] Length = 250 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADI-TSDKITVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|323490055|ref|ZP_08095276.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis MPA1U2] gi|323396351|gb|EGA89176.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis MPA1U2] Length = 245 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 17/226 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLF---NGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 +GD ++A V+R GDN++ D E LS V I K+E K Sbjct: 19 TGDDAKHIAKVMRQTVGDNLIAVIEEQAYDAEILSTDFDVEIKIGNKIETLVELPKK--- 75 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAA 135 V K ++LD + QK+ E+GM A+ P ++ + + R++ AA Sbjct: 76 VTIACGLPKGDKLDLITQKATELGMYALLPFSAERSIVKWDNAKSDKKIGRLQKIAKEAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVA 191 EQ +P ++ + + L+ + ++ A E + E + ++ +V Sbjct: 136 EQSHRTHIPEVHNIHSFKQLISKAEAYDVVIVAYEEEARQGDRTRFAEIIKSLYDKDSVL 195 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ GPEGG E + L + + SLGPRILR++TA + A++ + Sbjct: 196 LVFGPEGGISDAEVQALKNFGAIFT-SLGPRILRTETAPLYALSAI 240 >gi|308174332|ref|YP_003921037.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7] gi|307607196|emb|CBI43567.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7] Length = 256 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS-IRFKV-EYQSRSQTKQSD 81 +G+ H++A+V+RM G I+ + KDG E L + + K I V E+ ++ Sbjct: 22 TGEDVHHIANVMRMSAGGRIICCS-KDGHEALCLLKEISKDHISCSVAEWTGENRELPLK 80 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135 ++ K ++L+++IQK E+G R V+ + +R AA Sbjct: 81 IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAA 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSL--EKLHAIAHIPNVA 191 EQ +P + T LL+ ++ C + + + + E +L ++ ++ Sbjct: 141 EQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL 200 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I+ GPEGG E + L V LGPRILR++TA + A++ V Sbjct: 201 IVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPLYALSAV 245 >gi|24214688|ref|NP_712169.1| hypothetical protein LA_1988 [Leptospira interrogans serovar Lai str. 56601] gi|45657777|ref|YP_001863.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195677|gb|AAN49187.1|AE011372_3 conserved hypothetical protein [Leptospira interrogans serovar Lai str. 56601] gi|45601017|gb|AAS70500.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 230 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 18/221 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR--FKVEYQSRSQTKQSDVQY 84 ++ +L + E N+ + NG EW+ +I G S++ FK ++ + K V Sbjct: 22 EEISHLKALRIFSEDKNLRVLNGIGTEWIYEIP--GNSVQGIFK---KTITHLKSERVSA 76 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 + + I K NRL++++QK E+G+ + + +N++R + A+ Q + L Sbjct: 77 VATAIPKGNRLEWLLQKGTELGLTHFYFLNFEQSDRKDFNLNRAQKIVEEASIQSKRIFL 136 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P I P +L EFL+ N I D + E N +IGPEGG+ Sbjct: 137 PEIVSPVSLKEFLISQKKQNLSIYRLDPQGEWKLKPE------FFQNAIWIIGPEGGFRE 190 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ--AIC 241 +E L + + +G IL+ +TA V +L + IC Sbjct: 191 KEILLLQERN-IPGIKVGDTILKIETAVVFTASLFRYSTIC 230 >gi|16800575|ref|NP_470843.1| 16S ribosomal RNA methyltransferase RsmE [Listeria innocua Clip11262] gi|16413980|emb|CAC96738.1| lin1507 [Listeria innocua Clip11262] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R FV++ L + +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYT 117 + V++ ++ K ++L+ +IQKS E+G A R V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAIAHI--PNVAIL--IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVA 232 L + P ++L GPEGG EKE L L+ LGPRILR++TA + Sbjct: 181 DSVLTNLFQTMKPGQSVLCIFGPEGGIS--EKELLLLQEVNAKLAGLGPRILRTETAPLY 238 Query: 233 AMA 235 ++ Sbjct: 239 VLS 241 >gi|295406700|ref|ZP_06816505.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8819] gi|297245718|ref|ZP_06929583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8796] gi|294968447|gb|EFG44471.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8819] gi|297177369|gb|EFH36621.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8796] Length = 253 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 28 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 86 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 87 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYR 146 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 206 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245 >gi|167769487|ref|ZP_02441540.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM 17241] gi|167668455|gb|EDS12585.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM 17241] Length = 241 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 25/235 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSD 81 +G+ ++A LRMK G+ + + +G ++ +I + +R S + + Sbjct: 17 TGEDARHMALSLRMKIGEAVTVCDGAGRDYQCRIETIAPEQVLLRVGQSAVSAGEPRVEI 76 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 Y P K ++ + ++QK+VE+G I PV+T + ++R + AA Sbjct: 77 TLYQAMP-KGDKFESIVQKAVELGAARIVPVLTHRCVSRPDEKAMRKKLERYNRIALEAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP---N 189 +QC +P + P L F C+ I+F EN+ + LH Sbjct: 136 KQCGRGRIPQVEP--MLHFSQAVERMKCEPLAILF------YENADQPLHQALRSGVGGR 187 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++++G EGG+ E + LSLG RILR +TA VAA+A + G++ Sbjct: 188 ISLMVGSEGGFEPSEA-GFAVENGLMALSLGSRILRCETAPVAALAAILYAAGEF 241 >gi|323440475|gb|EGA98187.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus O11] Length = 250 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADI-TSDKITVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A+ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALGAI 242 >gi|332296139|ref|YP_004438062.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium narugense DSM 14796] gi|332179242|gb|AEE14931.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium narugense DSM 14796] Length = 240 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 17/223 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D+ HYL VLR+K+ D +++ +G + S++ G I E + K + + F Sbjct: 27 DEKHYLFKVLRLKDDDEVVVLDGAGNIFRSRVK--GDCIILG-EKSDAKEPKLNLTLFQF 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQCDIL-- 141 P K ++ +I+ E+G ++ + Y + Y ++++++ + A E ++ Sbjct: 84 LP-KGDKFSEIIRMCTELG---VKKFVLIYGERNSYGEVSLNKIKRWQRIAKEAAELAGR 139 Query: 142 -TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I P L F + + QIV E S S++ L A ++++ IG EGG Sbjct: 140 GVVPEILGPYKL-FKVPDELFKGQIVVFWEN--SNQSIKDLFKSAISEDLSLFIGAEGGI 196 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E E L S LSLG RILR TA+V+A +++ + D Sbjct: 197 SLNEIEFLKS-KGAYVLSLGERILRVQTASVSACSIMFYLSND 238 >gi|152991316|ref|YP_001357038.1| 16S ribosomal RNA methyltransferase RsmE [Nitratiruptor sp. SB155-2] gi|151423177|dbj|BAF70681.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 220 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 21/218 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 G+ Y+Y+ V R ++G+ I + N +DG L V S R V +S+ K+ + + Sbjct: 17 EGETYNYIFKVRRHRKGETIAIRNMEDGT-LYWYEIVEVSRREAVLELRKSEKKEVEPKR 75 Query: 85 IFSPIKTNRLDYMIQKSV----EMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCD 139 F I ++K++ E+G+ I V R +N ++++R I++++QC Sbjct: 76 FFHLIWCIVDPKTVEKTLPMLNEIGVSKITFVYCDRSQKNFKLKLEKLRKILINSSQQCG 135 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 L + +L+ ++K ++ + F +E +++E+ +LIGPEGG Sbjct: 136 RSRLMELEILLSLDEVIKKYNDIVLVDFCEEKLSCTDNVER-----------VLIGPEGG 184 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EE+ + + P +LRS+TAAVA + V Sbjct: 185 VTKEERALFEKVKGLDT----PMVLRSETAAVATASKV 218 >gi|170758760|ref|YP_001788269.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A3 str. Loch Maree] gi|169405749|gb|ACA54160.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A3 str. Loch Maree] Length = 252 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD I + N + E+ +I + K S+ Sbjct: 3 KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + Y++ + K+ ++D ++QKS E+G+ I P+IT + Sbjct: 63 KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +DR + A +QC +P + P LL+ IV E+ + + Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPNVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKSLI 182 Query: 182 HAIAHIPNVAILIGPEGGYHSE-EKETLHSLPFVTP--LSLGPRILRSDTAAVAAMALVQ 238 +I + IG G E+ + +L + ++LGPRI R++TA + +++ Sbjct: 183 KSIEYEKENIKNIGIIIGPEGGFEESEIRALEKIKAQIVTLGPRIFRTETAGIVCASIIS 242 Query: 239 AICGD 243 GD Sbjct: 243 YELGD 247 >gi|153940109|ref|YP_001392233.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum F str. Langeland] gi|152936005|gb|ABS41503.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str. Langeland] gi|295320231|gb|ADG00609.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str. 230613] Length = 252 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 + FV I + GD ++ VLR++ GD I + N + E+ +I + K S+ Sbjct: 3 KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + Y++ + K+ ++D ++QKS E+G+ I P+IT + Sbjct: 63 KILEQVEVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN----S 177 +DR + A +QC +P + P LL+ IV E+ EN S Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYES--KENYGIKS 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP--LSLGPRILRSDTAAVAAMA 235 L K I I EE E + +L + ++LGPRI R++TA + + Sbjct: 181 LVKSIEYEKENIKNIGIIIGPEGGFEESE-IRALEKIKAQIVTLGPRIFRTETAGIVCAS 239 Query: 236 LVQAICGD 243 ++ GD Sbjct: 240 IISYELGD 247 >gi|304413315|ref|ZP_07394788.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1] gi|304284158|gb|EFL92551.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1] Length = 271 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 14/209 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D +++ VLRMK+G + LF+G + + ++I + K F + ++S + Sbjct: 23 DAVKHVSLVLRMKKGQLLHLFDGSNRLFTAEIIRLDKKKVFVRVDAGCVEDRESPLHLHL 82 Query: 87 SPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQC 138 + + R++ IQKSVE+G+ + P+ + + + R I+A EQC Sbjct: 83 GQVISRGERMELTIQKSVELGVNVLTPLFSERCSIKLSEERLEKKNQQWRKIAIAACEQC 142 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P I +L + D + ++ + N+L + + +LIG EG Sbjct: 143 GRNVIPEIRAAMSLSDWCQQQDDSLKLTLDPQAKKQMNTLP-----LSVDKIRLLIGSEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSD 227 G ++E + + F + +GPRI R++ Sbjct: 198 GLSADEIDMTFNNGF-EGIRMGPRIFRTE 225 >gi|257791397|ref|YP_003182003.1| hypothetical protein Elen_1646 [Eggerthella lenta DSM 2243] gi|257475294|gb|ACV55614.1| protein of unknown function DUF558 [Eggerthella lenta DSM 2243] Length = 291 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 15/220 (6%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 A VLR+ G++I + + + +I+ ++ Q ++ V + K + Sbjct: 33 ARVLRLAPGEHIAVVDAAQDYFECEIAAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGD 92 Query: 93 RLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +++ +I+ + E+G+ A P+ I R + R R SAA Q P + Sbjct: 93 KMETVIRHATELGVSAFVPMSCERSIVRLDARKAAARTQRWRAIAKSAAMQSGQRACPEV 152 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIPNVAILIGPEG 198 P L + + H ++ E + +EK A+ +A+++GPEG Sbjct: 153 GEPMALADVCASLAHATAVLVCWEEALLDARIEKALERGLRLDRALPENARIAVVVGPEG 212 Query: 199 GYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAMALV 237 G E + L + P + +SLG ILR++TA + A ALV Sbjct: 213 GLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALV 252 >gi|150006102|ref|YP_001300846.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides vulgatus ATCC 8482] gi|254883488|ref|ZP_05256198.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294775280|ref|ZP_06740803.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510] gi|319641723|ref|ZP_07996406.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A] gi|149934526|gb|ABR41224.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254836281|gb|EET16590.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294450857|gb|EFG19334.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510] gi|317386697|gb|EFV67593.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A] Length = 233 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ GD I+L +GK + + IS GK + KV E + + + Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQEKGWNGWLHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R ++ +K+ E+G + + RY++ +R+ +SA +Q T+ Sbjct: 78 AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + T + D Q A G + L+ + + + ++IGPEG + E Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAHCYEGEKPLLKDI--LRSGEDALVMIGPEGDFSEE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + F P+SLG LR++TAA+ A Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223 >gi|319901365|ref|YP_004161093.1| hypothetical protein Bache_1502 [Bacteroides helcogenes P 36-108] gi|319416396|gb|ADV43507.1| protein of unknown function DUF558 [Bacteroides helcogenes P 36-108] Length = 232 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK-VEYQSRS 75 I+ + + ++ + VLR++ GD ++L +G + ++IS GK K +E + Sbjct: 9 IEIRSELPEEEAAHAIRVLRLQTGDEVMLTDGNGNFYRAEISTATGKRCSVKIIETLPQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILISA 128 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T F+ + ++ I C + L I + +L Sbjct: 129 IKQSLKARLPKLNEMTDFNNFITRPFEGQKFIAH----CHEDEKLLLKEQIRKGEDALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + EE + F+ P+SLG LR++TAA+ A Sbjct: 185 IGPEGDFSEEEVKKALKNGFI-PISLGKSRLRTETAALVA 223 >gi|237709004|ref|ZP_04539485.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457066|gb|EEO62787.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 233 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ GD I+L +GK + + IS GK + KV E + + + Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTEAIPQEKGWNGWLHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R ++ +K+ E+G + + RY++ +R+ +SA +Q T+ Sbjct: 78 AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + T + D Q A G + L+ + + + ++IGPEG + E Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAHCYEGEKFLLKDI--LRSGEDALVMIGPEGDFSEE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + F P+SLG LR++TAA+ A Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223 >gi|265755568|ref|ZP_06090189.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234174|gb|EEZ19767.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 233 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ GD I+L +GK + + IS GK + KV E + + + Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQEKGWNGWLHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R ++ +K+ E+G + + RY++ +R+ +SA +Q T+ Sbjct: 78 AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + T + D Q A C L + + ++IGPEG + E Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAH--CYEGEKLLLKDILRSGKDALVMIGPEGDFSEE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + F P+SLG LR++TAA+ A Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223 >gi|241895699|ref|ZP_04782995.1| protein of hypothetical function DUF558 [Weissella paramesenteroides ATCC 33313] gi|241871066|gb|EER74817.1| protein of hypothetical function DUF558 [Weissella paramesenteroides ATCC 33313] Length = 246 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 24/224 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-----SRSQTKQS---D 81 H+ VLR +EG E + V K +RF+ E SR +T D Sbjct: 23 HHFITVLRSREGAQAEFVLPNQHEVI-----VAKIVRFEAEQAIMAVISRQETSVELPVD 77 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAE 136 + K ++ + ++QK+ E+G I V T ++ Q + R+ +AAE Sbjct: 78 TTIVIGLSKGDKPEMVVQKATELGAHHIVVVETAWSVVHWGQKATKKLVRLNKIAAAAAE 137 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE---KLHAIAHIPNVAIL 193 Q L +P + ++L+ L+ D ++V +E+ + E +L+ + +V L Sbjct: 138 QAHRLRIPDVTYESSLDGLM--IDATVKLVAWEESAKQGETGELVRQLNRLQPDDSVCFL 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG +E + L FV P LGPRILR++TA + A++++ Sbjct: 196 FGPEGGLSPQEIDVLVGQGFV-PAGLGPRILRAETAPLYALSVL 238 >gi|212692063|ref|ZP_03300191.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855] gi|237724658|ref|ZP_04555139.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212665455|gb|EEB26027.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855] gi|229436853|gb|EEO46930.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 233 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ GD I+L +GK + + IS GK + KV E + + + Sbjct: 18 EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQEKGWNGWLHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R ++ +K+ E+G + + RY++ +R+ +SA +Q T+ Sbjct: 78 AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + T + D Q A C L + + ++IGPEG + E Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAH--CYEGEKLLLKDILRSGEDALVMIGPEGDFSEE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E + F P+SLG LR++TAA+ A Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223 >gi|313623733|gb|EFR93877.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua FSL J1-023] Length = 255 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 15/224 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEDEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L ++ P ++L Sbjct: 140 QSHRTVVPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSVLASLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVAAMA 235 GPEGG EKE L L+ LGPRILR++TA + ++ Sbjct: 200 IFGPEGGIS--EKELLLLQEVNAKLAGLGPRILRTETAPLYVLS 241 >gi|145356785|ref|XP_001422606.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582849|gb|ABP00923.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 246 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 35/256 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 L R +VD S ++ + LR+K GD + + +G+ ++++ V G Sbjct: 1 LHRFYVDADFARGAAVTLSREETRHATKALRLKPGDRLEVCDGRGTLGIARLCAVDGVGA 60 Query: 66 RFKVE---YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-------- 114 +VE + DV F +K R D++++K E+G + P++T Sbjct: 61 TVEVEEMVADALGSGTAWDVASAFGGLKGGRGDWLVEKCAELGARTLVPLLTTRSGAIGG 120 Query: 115 --RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 R R +A++Q + + PP +E L C+ + D C Sbjct: 121 GDRDGDKKRGREGRWGRVAHAASKQSLRVYGLQVAPPIGVEAL-------CEEIAKD--C 171 Query: 173 GSENSLEKLHAIAHIPNVA-----------ILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 G +L I +VA I+IGPEG + EE + + + P+ LG Sbjct: 172 GERLTLLAAAGAPPIADVARASGLDLRSGRIVIGPEGDFTDEELKAMIA-AGARPVGLGS 230 Query: 222 RILRSDTAAVAAMALV 237 LR +TAA++A+A V Sbjct: 231 LRLRVETAAISALAAV 246 >gi|283851945|ref|ZP_06369221.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B] gi|283572669|gb|EFC20653.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B] Length = 249 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 16/213 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+ VLR + G+ + F+G E L I V + R ++E S ++ + + + Sbjct: 23 TGGEAHHCVRVLRKRPGEVVRAFDGLGREGLFTIMDVARD-RVELEVLSVTEAPRPECRL 81 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV--RTYT---ISAAEQ 137 + ++ R D+ ++KSVE+G I + +++ M V +T ++AA+Q Sbjct: 82 HLAAGFSRSARRDFFLEKSVELGAAGI---VFWQAEHSQGRMPAVPKEAWTATLVAAAKQ 138 Query: 138 CDILTLPF--IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 C LP + P + + + E G L L +A N ++G Sbjct: 139 CGAARLPALSVVPGGAAGLAALGSGFDRRYLLW-EAPGLSRRL-ALADVAVPGNALFVLG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 PEGG E ET S F LSLG R+LR +T Sbjct: 197 PEGGLTDAEAETCVSAGFAA-LSLGDRVLRWET 228 >gi|147845297|emb|CAN83371.1| hypothetical protein VITISV_034944 [Vitis vinifera] Length = 259 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 20/214 (9%) Query: 39 KEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIK------- 90 ++G + LFNGK G I+ + ++ + F + QS ++F+ Sbjct: 35 EDGKWVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFDFAITCLQ 94 Query: 91 --------TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDIL 141 R D++++K E+G ++ P++T + + N +DR++ ++AA+QC L Sbjct: 95 LLLLGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRL 154 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 + PPTT++ LL + + A + L + ++IGPEG + Sbjct: 155 HEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPEGDFT 212 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +E + T + LGP LR +TA +A +A Sbjct: 213 EKELNMMRE-AGATAVGLGPHRLRVETATIALLA 245 >gi|256027910|ref|ZP_05441744.1| putative cytoplasmic protein [Fusobacterium sp. D11] gi|289765859|ref|ZP_06525237.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289717414|gb|EFD81426.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 235 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87 +++ +V R +GD I +G + E+L +I + K I+ K+ E + + +V S Sbjct: 23 NHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLDIEVDAGIS 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R DR T + A +QC + I Sbjct: 82 ILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQCQGVVPTVI 141 Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 ++ L LK++D N + VF + +N K I +I IG EGG Sbjct: 142 DEIKKIDKLNLKDYDLILVPYENEKKVFIKDIL--KNLKVKPTKILYI------IGAEGG 193 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + EE + L +SLG RILR++TAA+ ++ Sbjct: 194 FEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|284801857|ref|YP_003413722.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578] gi|284994999|ref|YP_003416767.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923] gi|284057419|gb|ADB68360.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578] gi|284060466|gb|ADB71405.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923] Length = 255 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 15/218 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L + P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229 GPEGG EKE + L+ LGPRILR++TA Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235 >gi|291320322|ref|YP_003515584.1| hypothetical protein MAGa4150 [Mycoplasma agalactiae] gi|290752655|emb|CBH40628.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 227 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 17/158 (10%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYN--MDRVRTYTISAAEQCDILT 142 IK R ++++QK+ E+G+ I P+ +++ T +N +DR +AAEQ Sbjct: 75 IKIKRFEWLLQKATELGVSRIIPMSSKFVDQTIIKYEFNKKIDRFNEIIKNAAEQSFRNV 134 Query: 143 LPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P + TT E +L N D +I A E E+ ++K+ N +++GPEGG Sbjct: 135 VPKLEKITTFEEIILSNQDK--KIYVAYENKEVESQIDKIET-----NSILIVGPEGGLS 187 Query: 202 SEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E + L + F+ +SLG ILR++TA + ++ V+ Sbjct: 188 KAEIDFALQNNCFI--VSLGKTILRAETACMYMLSNVR 223 >gi|172056822|ref|YP_001813282.1| hypothetical protein Exig_0784 [Exiguobacterium sibiricum 255-15] gi|171989343|gb|ACB60265.1| protein of unknown function DUF558 [Exiguobacterium sibiricum 255-15] Length = 248 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 19/245 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--S 64 ++R FV+ S D H++ +V+RM GD IL+ +G G + ++ + K + Sbjct: 1 MQRYFVEQTARAGNTFTLSKDDAHHIKNVMRMDVGDEILVLDGT-GLFRCRLEQLDKQTA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + +E V ++ K ++++ + QK+ E+G+ + R V + Sbjct: 60 VAELLEELPIETELPIHVTIAYALPKGDKVELVAQKATELGVSRLLVFESARSVSKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFAD-----ETC 172 ++R++ + AAEQ LP I T E L D+ C I + + E Sbjct: 120 KIPKKLERLQKISKEAAEQSYRAHLPTIEYVTYDEVLQCAADYTACLIAYEESAKEGEAA 179 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ++L +L + ++ ++IGPEGG E L + FV P SLG RILR++TA + Sbjct: 180 AFASTLSRLQS---GDSLLVVIGPEGGLTETEVTRLTAGGFV-PASLGRRILRTETAPLY 235 Query: 233 AMALV 237 ++ V Sbjct: 236 VLSAV 240 >gi|327314423|ref|YP_004329860.1| RsmE family RNA methyltransferase [Prevotella denticola F0289] gi|326944161|gb|AEA20046.1| RNA methyltransferase, RsmE family [Prevotella denticola F0289] Length = 259 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 24/228 (10%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSD-VQYIFSPIK- 90 VLR+KEGD + L +G+ + +++ K + + R + S + +P K Sbjct: 28 RVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYTIRQTMRQKPAWSGRIHLAIAPTKD 87 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 R+++M +K+ E+G I + R+++ DR+ +SA +Q P + P + Sbjct: 88 MGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADRIEKIVVSAVKQSRKGWKPLVNPMS 147 Query: 151 TLEFLLKNWDHN-----C----QIVFADETCGSENSLEK-------LHAIAHIP----NV 190 + ++N C +I D ++L+ L A P ++ Sbjct: 148 SFSSFVENCPDKGRKFICHCYPEIPRTDFFTAITSALQPGIFLQNGLEAQKEHPSGAADI 207 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +LIGPEG + EE + F + ++LG LR++TA ++A+ + Q Sbjct: 208 TVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRTETAGLSAVMMSQ 254 >gi|300727240|ref|ZP_07060656.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14] gi|299775478|gb|EFI72072.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14] Length = 243 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/224 (20%), Positives = 101/224 (45%), Gaps = 18/224 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ-SRSQTKQSDVQY 84 D+ ++ VLR++ GD + L +G + ++++ K +++ + + + + Sbjct: 21 DEANHALRVLRLQSGDQMFLMDGNGAFYEAEVTLASSKHCHYRITNTLVQEKAWKGKIHL 80 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K R+++M +KS E+G+ + ++++ +R+ +SA +Q + Sbjct: 81 GIAPTKMMERIEWMAEKSTEIGIDEFSFLHCKFSERKVLKKERIEKIVVSAMKQSRKPWM 140 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK---------LHAIAHIPNVAILI 194 P ++ T + + + C N +EK L +P V IL+ Sbjct: 141 PVVHEMTAFRDFIDAHTTGHRYI-----CHCYNEIEKKDLYTELLLLAKDEAVPEVTILV 195 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + +E S F + +SLG LR++TA ++ + + Q Sbjct: 196 GPEGDFSIDEVNYALSQGFES-VSLGNARLRTETAGLSGVMMAQ 238 >gi|255007829|ref|ZP_05279955.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis 3_1_12] gi|313145535|ref|ZP_07807728.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134302|gb|EFR51662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 229 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+T + ++ + VLR+ GD I L +GK + ++IS + R V + Sbjct: 9 IQTNAELPEEEAQHCVRVLRLTAGDEITLTDGKGNFYRAEIS-AATNKRCLVNIKETIHQ 67 Query: 78 K---QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 + + + +P K +R +++ +K+ E+G + + R+++ +R+ +S Sbjct: 68 EPLWEGHLHIAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A +Q LP + T ++ D + Q A G + L+ + + + +L Sbjct: 128 AIKQSLKARLPRLNEMTDFNSFIEK-DFSGQKFIAHCYEGEKPLLKDV--LKKGEDTLVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + EE + F+ P+SLG LR++TAA+ A Sbjct: 185 IGPEGDFSEEEVKKAIEKGFI-PISLGKSRLRTETAALVA 223 >gi|108804350|ref|YP_644287.1| hypothetical protein Rxyl_1513 [Rubrobacter xylanophilus DSM 9941] gi|108765593|gb|ABG04475.1| protein of unknown function DUF558 [Rubrobacter xylanophilus DSM 9941] Length = 242 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ H+L VLR G+ + +++++ + ++ ++ ++ + Y Sbjct: 21 EEDHHLRRVLRAGPGERFEAVDAAGRLFMAELREGASAEAVELLREAGAEERAEVWLYQA 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144 P K R+D +++K+ E+G+ I P++ + + ++R R SAA Q L +P Sbjct: 81 VP-KGKRMDLVVEKATEVGVAGIAPLVCERSVVRPGDNKVERWRRIAESAARQALRLRVP 139 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + P ++ ++ + L+ L A VA+L+GPEGG+ E Sbjct: 140 EVREPVAFREAVREVGGRGVLLH------NGPGLDPLEERAR-GAVALLVGPEGGWSGAE 192 Query: 205 -KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +E L ++ LGP LRS+TA V A+A ++A+ Sbjct: 193 IEEALRC--GLSLAQLGPFRLRSETAGVVAVARMRAV 227 >gi|189460815|ref|ZP_03009600.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136] gi|189432389|gb|EDV01374.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136] Length = 232 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 9/212 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ GD I+L +GK + + IS GK + KV E + + + Sbjct: 18 EEAGHCLRVLRLTVGDEIMLTDGKGCFYRAAISAATGKRCQVKVNEVIPQEPFWKGHLHL 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R+++ ++K+ E+G + + R+++ +R+ +SA +Q Sbjct: 78 AMAPTKNMDRIEWFVEKATEIGFDELSFLNCRFSERKVIKTERIEKIVVSAIKQSLKARK 137 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + F+ + + I E E L K + + +LIGPEG + Sbjct: 138 PVVNEMVDFGRFMQREFAGQKFIAHCYE---GEKPLLK-DVLQPGEDAVVLIGPEGDFSR 193 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 EE E ++ F + +SLG LR++TAA+ A+ Sbjct: 194 EEVEKAEAMGFRS-ISLGKSRLRTETAALVAV 224 >gi|307564915|ref|ZP_07627435.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A] gi|307346355|gb|EFN91672.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A] Length = 265 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 31/243 (12%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 +K + ++ + VLRMK+GD + L +G + ++++ F ++ Q Sbjct: 12 VKNSTELPAEEMVHAVRVLRMKQGDELFLMDGAGYFYRAQVTMTSAKHCFYTIKEALYQK 71 Query: 78 K--QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 K + + +P K R++++ +K E+G+ I + R+++ +DR+ ISA Sbjct: 72 KNWRGHIHLAIAPTKDIGRIEWLAEKVTEIGIDEITFLSCRFSERKQLRIDRIEKIIISA 131 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIP--- 188 +Q P + T+ +F+ K V A + S+ K H I Sbjct: 132 MKQSRKGWKPIVNEMTSFGDFIRK--------VSATTYSNKKPSINKFICHCYEEIKKKD 183 Query: 189 -------------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +V ILIGPEG + EE + + F ++LG LR++TA ++A+ Sbjct: 184 LFSLLTKRNALERDVLILIGPEGDFSVEEVDLALANGF-QSVTLGDSRLRTETAGLSAVT 242 Query: 236 LVQ 238 + Q Sbjct: 243 MAQ 245 >gi|325110548|ref|YP_004271616.1| ribosomal RNA small subunit methyltransferase E [Planctomyces brasiliensis DSM 5305] gi|324970816|gb|ADY61594.1| Ribosomal RNA small subunit methyltransferase E [Planctomyces brasiliensis DSM 5305] Length = 248 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 13/213 (6%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + H+L +V+R K G + +FNG DG L V ++ + K Q + +++ D + Sbjct: 22 EAHHLLNVMRAKPGAEVEVFNG-DG--LVASVVVTEASKRKALLQPVAGSQRQDPNGLSI 78 Query: 88 PI-------KTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQC 138 P+ K++R ++++K E+G+ + P+ T + +++ + Y + A +Q Sbjct: 79 PLTLATAVPKSDRFRWLVEKGTELGVTRLVPLKTSRSVVSPRESKLEKQQQYVVEACKQS 138 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 TL I L L ++ SL V + +GPEG Sbjct: 139 GRNTLMEIGTLVDLADYLGQLPPESLLLTGAPAVVDSKSLWSELVETRPAEVVLFVGPEG 198 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G+ EE + L + P+S+GP +LR++TA + Sbjct: 199 GFTPEE-DALLAEHGAKPISVGPYVLRTETAGL 230 >gi|303256695|ref|ZP_07342709.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47] gi|330999335|ref|ZP_08323052.1| putative 16S rRNA methyltransferase RsmE [Parasutterella excrementihominis YIT 11859] gi|302860186|gb|EFL83263.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47] gi|329575193|gb|EGG56744.1| putative 16S rRNA methyltransferase RsmE [Parasutterella excrementihominis YIT 11859] Length = 236 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 30/231 (12%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY------QSRSQTKQS 80 + H+ VLRM++GD + +FNGK V +IRF ++ + Q + Sbjct: 22 EAVHHAMRVLRMRQGDAVEVFNGKG-------CAVKGTIRFATDFAEVIPQEVIMQPRGL 74 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134 + + + + ++D++I+K+ E+G I R + + ++R +SA Sbjct: 75 KLVLMQALVANEKMDWIIEKACELGYAEIAVFPSERGEVRLTCEKAVKRVERWNKIAVSA 134 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193 +QC LP I ++L+ H + F G K + P V Sbjct: 135 CQQCGENYLPNIRFCSSLK---DAAAHAEGLKFVLSPIG------KTYDSPDTPTAVTFA 185 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG +E TL F + LG R+LR++TAA+AA + Q + GD+ Sbjct: 186 VGPEGGLSPKEINTLIESGFYS-CKLGNRVLRTETAALAAASFAQTLWGDF 235 >gi|319937482|ref|ZP_08011887.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1] gi|319807322|gb|EFW03931.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1] Length = 244 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 115/241 (47%), Gaps = 15/241 (6%) Query: 7 LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F+D C+K + + + ++ V+R GD ++ ++ +I + + Sbjct: 1 MQRYFID-EKCLKDEEIRIDAYNHKHMQRVMRYHNGDQVICILPSAKTYIYEIIDIETGL 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +VE + +V I+ K+++ ++++QK+ E+G+ I P +++ + + Sbjct: 60 LKRVEELHENHELDVNVTLIYGLPKSDKFEWVLQKATELGVKRIVPFLSKRSIIKTDAKT 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R + A+EQ +P + T++ L + + +V +E S+ E Sbjct: 120 FSKKEERYQRILKEASEQSYRQMIPELTQLITIKD-LSQYLSDINLVAYEE--ASKRGEE 176 Query: 180 KLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A A N + I++GPEGG+ E E + +L + SLG RILRS+TA + +++ Sbjct: 177 CCFASALKQNYQTLTIIVGPEGGFDQSEIEQMKALG-IQECSLGKRILRSETAPLYMLSV 235 Query: 237 V 237 + Sbjct: 236 I 236 >gi|258405682|ref|YP_003198424.1| 16S ribosomal RNA methyltransferase RsmE [Desulfohalobium retbaense DSM 5692] gi|257797909|gb|ACV68846.1| protein of unknown function DUF558 [Desulfohalobium retbaense DSM 5692] Length = 244 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 24/224 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84 G ++ +L LR+ GD + L NG+ +I + GK R VE + + S + Sbjct: 23 GQEFTHLRKALRLGPGDAVQLTNGRGDVADGRIEAIQGKKARITVESITSVDRRDSQIVV 82 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT--------ISAAE 136 K+ R + ++K+ E+ + Y ++ R+ T ++ A+ Sbjct: 83 AVGWAKSLRRGWFLEKAAELEARGV------YLWQAEHSQGRIPDATKANWQGQLVAGAK 136 Query: 137 QCDILTLPF--IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IAHIPNVAI 192 Q LP ++P E L D + + + E H +A Sbjct: 137 QSGNPWLPELEVFPGGLAELLEATADIDHRFFLWENATAEEG----FHPPPLADGERALA 192 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++GPEGG+ E E L + V P+SLG R+LR +TAA+ + L Sbjct: 193 ILGPEGGFADSEVELLRAH-NVRPVSLGRRVLRWETAALLCLGL 235 >gi|253826777|ref|ZP_04869662.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT 98-5491] gi|313142210|ref|ZP_07804403.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510183|gb|EES88842.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT 98-5491] gi|313131241|gb|EFR48858.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 220 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 G+ YH+L H R K+ +++ L N +D ++ +S ++R + + ++ SQ S Sbjct: 18 GEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKYATLRLESKLETPSQNP-SK 76 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDI 140 I++ I ++ + E+ + I +Y+Q N N++R++ ++ QC Sbjct: 77 GHLIWAMIDPKIIEKTLPFLNELNIYKISFFYAQYSQKNFKLNLERIQKILENSCMQCGR 136 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +TL I L+ +L+ + + + F + E+SLE + IL+G EGG+ Sbjct: 137 ITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--ESSLE----------IPILVGAEGGF 184 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E+E L S P T ++ ILRS+TA + AM+ + Sbjct: 185 SPQERELLKSNPKYT--AIHSNILRSETATIYAMSKI 219 >gi|224418688|ref|ZP_03656694.1| 16S rRNA m3U1498 methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 235 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 G+ YH+L H R K+ +++ L N +D ++ +S ++R + + ++ SQ S Sbjct: 33 GEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKYATLRLESKLETPSQNP-SK 91 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDI 140 I++ I ++ + E+ + I +Y+Q N N++R++ ++ QC Sbjct: 92 GHLIWAMIDPKIIEKTLPFLNELNIYKISFFYAQYSQKNFKLNLERIQKILENSCMQCGR 151 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +TL I L+ +L+ + + + F + E+SLE + IL+G EGG+ Sbjct: 152 ITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--ESSLE----------IPILVGAEGGF 199 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E+E L S P T ++ ILRS+TA + AM+ + Sbjct: 200 SPQERELLKSNPKYT--AIHSNILRSETATIYAMSKI 234 >gi|253580713|ref|ZP_04857977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848084|gb|EES76050.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 248 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 46/259 (17%) Query: 7 LKRLFVDFPLCIKTQG---KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R FV+ P I+ + +G +++ +VLRMK G+++ + +G D E+ +I +G+ Sbjct: 1 MQRFFVE-PYQIEKEAHRIHINGTDVNHIKNVLRMKCGEDVWISDGGDKEYHCQIEELGE 59 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY----- 116 + + Y + + + Y+F + K ++++ +IQK+VE+G +I PV T+ Sbjct: 60 DEVLLHILYAQEPEYELPNKIYLFQGLPKADKMELIIQKAVELGAFSIIPVETKRCVVKL 119 Query: 117 -TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADET 171 + + R + SAA+Q + +P I+ T LEF K D +++ + Sbjct: 120 DVKKAAKKVVRWQQIAESAAKQSKRMLIPEIHEVMTYKQALEF-AKQLD--VKLIPYELA 176 Query: 172 CGSENSLEKLHAIAHIPNVAILI-------------GPEGGYHSEEKETLHSLPFVTPLS 218 G + + E L I +V I I E G H+ ++ Sbjct: 177 KGMKETREILSEIKPGQSVGIFIGPEGGFEEEEVAKALEAGAHA--------------IT 222 Query: 219 LGPRILRSDTAAVAAMALV 237 LG RILR++TA +A ++++ Sbjct: 223 LGRRILRTETAGLAILSVL 241 >gi|237744246|ref|ZP_04574727.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431475|gb|EEO41687.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 22/219 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87 +++ +V R +GD I +G + E+L +I + K I+ K+ E + + +V S Sbjct: 23 NHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLDIEVDAGIS 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R DR T + A +QC + I Sbjct: 82 ILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQCQGVVPTVI 141 Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEG 198 ++ L LK++D N + +F + L + P + +IG EG Sbjct: 142 DEIKKIDKLNLKDYDLILVPYENEKKIFIKDI---------LRNLKVKPTKILYIIGAEG 192 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G+ EE + L +SLG RILR++TAA+ ++ Sbjct: 193 GFEKEEIDYLKE-SGAKIISLGKRILRAETAAIVTGGVI 230 >gi|325831347|ref|ZP_08164601.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1] gi|325486601|gb|EGC89049.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1] Length = 291 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 15/220 (6%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 A VLR+ G++I + + + +I+ ++ Q ++ V + K + Sbjct: 33 ARVLRLAPGEHIAVVDAAQDYFECEITAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGD 92 Query: 93 RLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +++ +I+ + E+G+ A P ++ + R R SAA Q P + Sbjct: 93 KMETVIRHATELGVSAFVPMSCERSIVRLDAKKAAARTQRWRAIAKSAAMQSGQRACPEV 152 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIPNVAILIGPEG 198 P L + H ++ E + +EK A+ +A+++GPEG Sbjct: 153 GEPMALADVCAFLAHATAVLVCWEEAPLDARIEKALERGLRLDRALPENARIAVVVGPEG 212 Query: 199 GYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAMALV 237 G E + L + P + +SLG ILR++TA + A ALV Sbjct: 213 GLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALV 252 >gi|116872901|ref|YP_849682.1| hypothetical protein lwe1485 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741779|emb|CAK20903.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 255 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 13/223 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++ V+RMKE D + + ++ I+ + + V++ + ++ Sbjct: 20 TGENFHHITRVMRMKEADQVFIVFPSKKTCVATITAINDEEVVLNLVKWLEENTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVAKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAI 192 Q +P + + + L+ N H ++ A E E L ++ +V Sbjct: 140 QSHRTVIPEVQYAASFKELMLNHVHYDYVIAAYEESAREGEDSALPSLFQTMKKGQSVLC 199 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + GPEGG SE++ L T LGPRILR++TA + ++ Sbjct: 200 IFGPEGGI-SEKELILLQDANTTLAGLGPRILRTETAPLYVLS 241 >gi|331270009|ref|YP_004396501.1| hypothetical protein CbC4_1830 [Clostridium botulinum BKT015925] gi|329126559|gb|AEB76504.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum BKT015925] Length = 251 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 21/234 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 G+ ++ VLR+KEG+ + + N E+L I Y+ K+ KVE + + K ++ Sbjct: 19 EGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKT---KVEVKLVEELKVNNEPP 75 Query: 84 ---YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-------HYNMDRVRTYTI 132 Y+F + K+ ++D + QK E+G+ I P++T ++ +DR Sbjct: 76 IEVYLFQGLPKSTKMDLITQKCTELGIKEITPIVTSRVSSSINDIKRESKKIDRWNRIAF 135 Query: 133 SAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIPN 189 A +Q +P + T + F K D + +V + E G + + L + Sbjct: 136 EACKQNKRTLIPIVNDITDFDGFTAKLKDMDLIVVPYENAENYGIKQMTKGLK--GEVKK 193 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +AI+IGPEGG+ EE +L + ++LGPRILR++TA +AL+ GD Sbjct: 194 IAIVIGPEGGFEEEEITSLKN-KGAHIVTLGPRILRTETAGFTCLALLMYELGD 246 >gi|225164644|ref|ZP_03726886.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] gi|224800744|gb|EEG19098.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] Length = 263 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 20/229 (8%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDV 82 + H+L V R + GD +++F+G+ EW ++ K ++ + + + V Sbjct: 32 ESHHLVVVNRARAGDPVVVFDGRGREWTGTLAEANKRAAVIAVGTDAQAGRLAPSLPCAV 91 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136 + K +D +++ + E+G+ I P+ + TQ + +++ R + A + Sbjct: 92 TLAQALPKGGVMDDIVRHATELGVTRIVPLESARTQVHLDGGRSDKKLEKWRAGALEACK 151 Query: 137 QCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAI-- 192 QC LP I P L EFL + ++V A G+ + E + A A P I Sbjct: 152 QCGNPWLPEIAPVRGLAEFLREVGAAELRLV-ASLHPGARHVREVVAEARAANPTRTIKS 210 Query: 193 ---LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L+GPEG +EE + + F ++LG +LR DTAA A++++ Sbjct: 211 AIWLVGPEGDLTAEEIDAALAAGF-QAVTLGALVLRCDTAATYALSVLN 258 >gi|217967714|ref|YP_002353220.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724] gi|217336813|gb|ACK42606.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 27/226 (11%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGK--SIRFKVEYQSRSQTKQSDV 82 D +H + +VLR++EG+ I D + SKI +YV K R + + K+++V Sbjct: 23 DIFH-MVNVLRIREGEKI------DVNYNSKIFRAYVEKIEEDRVICKIIEKIGNKEANV 75 Query: 83 Q-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPV--------ITRYTQNTHYNMDRVRTYTI 132 + Y+ + K + +++K E+G+ P+ ++R N Y R Sbjct: 76 EVYLCQSLPKKESWEIILEKCTEIGVVGFIPLQTQRSIVNLSRDELNKKY--QRWNKVIK 133 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 A +QC LP +Y TLE L N I+ A E G+E SL+ + + Sbjct: 134 EAVKQCGRNKLPLLYKVQTLEESLNLAKKENADILIAWE--GAELSLKNIIRNNIRDKIF 191 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IGPEG + EE + + ++GPRIL+ +TAA+ A AL+ Sbjct: 192 LFIGPEGSFTDEEINLMKKYNGIF-FNMGPRILKVETAAIVASALL 236 >gi|82751180|ref|YP_416921.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus RF122] gi|82656711|emb|CAI81138.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 250 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R G I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + V ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMEHSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|237785905|ref|YP_002906610.1| hypothetical protein ckrop_1323 [Corynebacterium kroppenstedtii DSM 44385] gi|237758817|gb|ACR18067.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 299 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 19/234 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRSQTKQSD-- 81 +G + + V R+ GD+++L NG +G+WL + R + T S Sbjct: 67 TGSEGRHAVTVKRLVAGDSLVLVNG-EGDWLRCTVESTPSKTRLRATVLEAGHTPMSTPP 125 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136 + + + K++R + + + + G AI P I R+ + +++++ Sbjct: 126 ITVVQALPKSDRSELAVDLACQAGADAIVPWSASRSIARWKGKEKKAGGKWADTAVASSK 185 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCGSENSLEKLHAIAHIPNV 190 Q LP I +T + ++ + Q ++ E+ + E L + I Sbjct: 186 QSRRARLPRIAALSTTDDVVNAIEQVTQSGGLALVLEESESVRVTSLAENLRQASQI--- 242 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG +E + T + LGP +LR+ TAA A+ V +CG W Sbjct: 243 MLIVGPEGGIAPDEHDAFVRA-GATSVVLGPEVLRTATAASVALGAVNVLCGRW 295 >gi|148270532|ref|YP_001244992.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga petrophila RKU-1] gi|281412840|ref|YP_003346919.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10] gi|147736076|gb|ABQ47416.1| protein of unknown function DUF558 [Thermotoga petrophila RKU-1] gi|281373943|gb|ADA67505.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10] Length = 222 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYIF 86 + H++ V+R+KEGD I +GK + + + K + ++ + K ++ + Sbjct: 20 ETHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKVATARIVKAEEKEKKSAEKLSVV 78 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLP 144 PI + R ++I+K VE+G+ I ++ ++ H ++D+ + +A+QC Sbjct: 79 VPIGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKTKIVVRESAKQCR----R 132 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 +++P + L+ + + ++ D S+N L+ + ++ +++GPEGG+ +E Sbjct: 133 YLFPKVSF---LEKLELSGNVITLD-LDASQNLLD----VNLEGSITVVVGPEGGFSEKE 184 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E L S T +SLG +ILR +TAA+ + + Sbjct: 185 RELLRS--STTVVSLGKKILRFETAAILTVGYI 215 >gi|283479683|emb|CAY75599.1| UPF0088 protein yggJ [Erwinia pyrifoliae DSM 12163] Length = 205 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 20/182 (10%) Query: 73 SRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR-- 128 SR +++S + + + ++++ IQK+VE+G+ I P+ +++ +D R Sbjct: 31 SREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGVKLDAERLA 87 Query: 129 -------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 I+A EQC +P + L+ + ++ S N+L Sbjct: 88 KKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINTLP-- 145 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + V +LIGPEGG ++E T+ + T + LGPR+LR++T A+ A+ +Q Sbjct: 146 ---LPVERVRLLIGPEGGLSADEI-TMTAQHGFTDILLGPRVLRTETTALTAITALQVRF 201 Query: 242 GD 243 GD Sbjct: 202 GD 203 >gi|19704550|ref|NP_604112.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714836|gb|AAL95411.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 235 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 28/239 (11%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68 ++ DF L I +GD H + + R +GD I +G + E+L +I + K I+ K Sbjct: 9 IYDDFILVI-----DAGDINH-IKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLK 61 Query: 69 VEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDR 126 + + + + +V S +K +++D IQK E+G+ I P+ + R DR Sbjct: 62 ILEKIEDKFSLDIEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDR 121 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLE 179 T + A +QC + I + L K++D N + +F E Sbjct: 122 WDTISKEALKQCQGVVPTVIDEIKKINKLNFKDYDLILVPYENEKEIFIKEI-------- 173 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P+ + +IG EGG+ EE + L +SLG RILR++TAA+ ++ Sbjct: 174 -LRDLKIKPSKILYIIGAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|256827194|ref|YP_003151153.1| hypothetical protein Ccur_07670 [Cryptobacterium curtum DSM 15641] gi|256583337|gb|ACU94471.1| conserved hypothetical protein TIGR00046 [Cryptobacterium curtum DSM 15641] Length = 260 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85 D++H A VLR+ G+++ + + + +I S+ + ++ + + + V + Sbjct: 29 DEHH--ARVLRLAAGEHVAVVDAAQDYFECEIVSFYAAGMCVRIAAHNSASVDRPQVCLL 86 Query: 86 FSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 K +++D +I+ + E+G + R V+ H + R R SAA Q Sbjct: 87 QGISKGDKVDVVIRHATELGVTQFVPLACERSVVKLDGDKAHKRVGRWRAIAKSAAMQSG 146 Query: 140 ILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCG---SENSLEKLH----AIAHIPNVA 191 +P + P + + + D C ++ +E G SE + L AH VA Sbjct: 147 QPRIPEVTLPYRCDEVAEILSDATCILICWEEAHGVGVSEAIAQALQLSGQTAAH-ARVA 205 Query: 192 ILIGPEGGYHSEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 ++IGPEGG E + LH P ++LG ILR++TA + A AL + G Sbjct: 206 LVIGPEGGLTQHEVDYFLHMGPPAYAVTLGSSILRTETAGIVAPALALSTLG 257 >gi|315640054|ref|ZP_07895179.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315484182|gb|EFU74653.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 257 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 17/221 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK---VEYQSRSQTK 78 + +G+ +H++ V+RM+ G+++ L D ++I V ++ K +E R Sbjct: 18 EVTGEPFHHMIRVMRMEAGNHVYLVFANDMSLEAEIREVKADAVMLKPVAIEQLQRELPI 77 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTI 132 + + F K ++L++++QK E+G A ++ + +R++ Sbjct: 78 KVTIASGFP--KGDKLEWIVQKGTELGAAQFLAYPAKTSIVKWDPKKRQKKQERLQKIAQ 135 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETC--GSENSL-EKLHAIAHIP 188 AAEQ P + T LL + +C +V +E+ G L + +A Sbjct: 136 EAAEQSHRQVCPTVELFATQSDLLAAMETADCVLVAYEESAKKGEHAQLVQTFRKVAPGQ 195 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 ++ +L GPEGG+ EE E + + LGPRILR++TA Sbjct: 196 HLMVLFGPEGGFLPEEIERFVAAGAIC-CGLGPRILRTETA 235 >gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 [Thermobispora bispora DSM 43833] gi|296091922|gb|ADG87874.1| protein of unknown function DUF558 [Thermobispora bispora DSM 43833] Length = 246 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 34/240 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83 SG + H+ A V R++ G+ + + +G ++ GK + +V + ++ + + Sbjct: 21 SGPEGHHAATVRRLRPGERVDITDGAGRVAECVVAETGKDVLTARVLRRFHAEPPRPRLI 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K +R + ++ E G+ I P V+ + R R+ AA+Q Sbjct: 81 VVQALAKGDRGELAVEMMTEAGVDVIVPWAASRCVVQWKGDRAAKALARWRSTAREAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--------- 188 LP + + A+ G+E ++ LH A P Sbjct: 141 SRRFHLPEVT------------EQASTAQVAELISGAELAV-VLHEEAERPLSGITPPRG 187 Query: 189 ----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG EE L V P LGP +LR+ TA VAA A++ A CG W Sbjct: 188 PSAGDIVVVVGPEGGITEEELARLSEAGAV-PALLGPTVLRTSTAGVAAAAVLFARCGRW 246 >gi|257870868|ref|ZP_05650521.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257805032|gb|EEV33854.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 251 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 15/236 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ K G+ +H++ V+RM D + L L+KI + + + Sbjct: 1 MQRYFLNEDYEAKPVYVVEGEPFHHMVRVMRMVPDDCVYLVFQDQVAILAKIQQIDEQVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMG------AIRPVITRYTQ 118 +E + Q K+ + + K ++L+ ++QK E+G A V+ + Sbjct: 61 HLIEVEKEQQDKELPIHVTIASGYPKGDKLELIVQKGTELGAAKFIGFPAQSSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175 R++ AAEQ +P I + + L L N+D+ + + + E Sbjct: 121 KLQKKQQRLQKIAQEAAEQAQRQRVPIIQLAASDKELWDSLSNYDYVI-VAYEESAKSGE 179 Query: 176 NS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 N+ ++ L A + + GPEGG E S V LGPRILR++TA Sbjct: 180 NAKLIDILSKAAPGSKILAIFGPEGGLTPAEITRAESQGAVI-CGLGPRILRTETA 234 >gi|260494170|ref|ZP_05814301.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260198316|gb|EEW95832.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 235 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 22/219 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87 +++ +V R +GD I +G + E+L +I + K I+ K+ E + + +V S Sbjct: 23 NHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLDIEVDAGIS 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R DR T + A +QC + I Sbjct: 82 ILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQCQGVVPTVI 141 Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEG 198 ++ L LK++D N + +F + L + P + +IG EG Sbjct: 142 DEIKKIDKLNLKDYDLILVPYENEKKIFIKDI---------LRNLKVKPTKILYIIGAEG 192 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G+ EE + L +SLG RILR++TAA+ ++ Sbjct: 193 GFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|46907698|ref|YP_014087.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes serotype 4b str. F2365] gi|47093476|ref|ZP_00231239.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 4b H7858] gi|226224071|ref|YP_002758178.1| hypothetical protein Lm4b_01480 [Listeria monocytogenes Clip81459] gi|254824471|ref|ZP_05229472.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254932655|ref|ZP_05266014.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254991899|ref|ZP_05274089.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes FSL J2-064] gi|46880967|gb|AAT04264.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes serotype 4b str. F2365] gi|47018152|gb|EAL08922.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 4b H7858] gi|225876533|emb|CAS05242.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584214|gb|EFF96246.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593708|gb|EFG01469.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|328465513|gb|EGF36742.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes 1816] gi|332311912|gb|EGJ25007.1| Protein YqeU [Listeria monocytogenes str. Scott A] Length = 255 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 15/218 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDV 82 +G+ +H++ V+RMKE D + + ++ I+ + F V++ ++ Sbjct: 20 TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L + P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229 GPEGG EKE + L+ LGPRILR++TA Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235 >gi|296328429|ref|ZP_06870955.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154503|gb|EFG95295.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 235 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 28/239 (11%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68 ++ DF L I +GD H + + R +GD I +G + E+L +I + K I+ K Sbjct: 9 VYDDFILVI-----DAGDINH-IKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLK 61 Query: 69 VEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDR 126 + + + + +V S +K +++D IQK E+G+ I P+ + R DR Sbjct: 62 ILEKIEDKFSLDIEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDR 121 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLE 179 T + A +QC + I + L K++D N + +F E Sbjct: 122 WDTISKEALKQCQGVVPTVIDEIKKINKLNFKDYDLILVPYENEKEIFIKEI-------- 173 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P+ + +IG EGG+ EE + L +SLG RILR++TAA+ ++ Sbjct: 174 -LRDLKIKPSKILYIIGAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|159903322|ref|YP_001550666.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9211] gi|159888498|gb|ABX08712.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9211] Length = 251 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 18/224 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ HYL VLR+K GD I + NG W + ++++ Sbjct: 29 NETHYLTRVLRLKPGDEIFIVNGYGSLWRGCLEKSDSLTLLSSLTNPEIFHQRANPLICL 88 Query: 87 SPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI---SAAEQCDILT 142 + + + D +++ E+G+ +P+I+ + N + R++ + A EQ + L Sbjct: 89 AVVLPKKGFDEILRFCTEVGVDIFQPLISERSINQDIGILRLKRWQSIINEAVEQSERLW 148 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPN----VAILIGPE 197 +P + PP + +W I EN +L +A + N V I IGPE Sbjct: 149 MPELRPPIRFQ----DWVTESSIGAVSIGTTRENRYCELETWLAQLSNDLSHVWIAIGPE 204 Query: 198 GGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 GG+ S E H +V G ILR TAA+ + L+ + Sbjct: 205 GGWSSTELSLALKHGAQYV---QFGETILRVSTAAICSAQLMAS 245 >gi|312870591|ref|ZP_07730705.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3] gi|311093866|gb|EFQ52196.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3] Length = 251 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 28/234 (11%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQY 84 D H+LA VLR + G+ + L +L++++ + + K+ Q S+ Sbjct: 20 DVAHHLATVLRAQPGEQVELVLADHRAYLAEVTTIQPATTVKLVKQLPGNSELPVEVTLL 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNT-HYNMDRVRTYTISAAEQC 138 P + ++++QK+ E+G I I+ + N + R++ AAEQ Sbjct: 80 CGLPKTKEKPEWIVQKATELGATTIAFFESERSISHWAANKRERKLARLQKIADGAAEQS 139 Query: 139 -----------DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + LT P + + W+ + + ET L KL A + Sbjct: 140 HRNYQPRVAYYENLTAALAANPAPIRLV--AWEESAK---QGETSALAQVLTKLTAGEQV 194 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 VAI GPEGG + E E + + V P+ LGPRILR++TA + ++ V +C Sbjct: 195 --VAIF-GPEGGLTTGEVERMQAA-GVVPVGLGPRILRTETAPLYFLSAVSYVC 244 >gi|254852095|ref|ZP_05241443.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300765613|ref|ZP_07075592.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|258605395|gb|EEW18003.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300513714|gb|EFK40782.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] Length = 255 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 15/218 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDV 82 +G+ +H++ V+RMKE D + + ++ I+ + F V++ ++ Sbjct: 20 TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNLVKWLKEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L + P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229 GPEGG EKE + L+ LGPRILR++TA Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235 >gi|319892635|ref|YP_004149510.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus pseudintermedius HKU10-03] gi|317162331|gb|ADV05874.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus pseudintermedius HKU10-03] gi|323464327|gb|ADX76480.1| ribosomal RNA small subunit methyltransferase E, probable [Staphylococcus pseudintermedius ED99] Length = 250 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 28/232 (12%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-----RFKVEYQSRSQTKQ 79 + + H++ V+R GD +++ +L+ ++Y K I R +E R + + Sbjct: 20 NNNDIHHIKSVMRQNVGDALII------NFLNAVTYRCKIIDIEAQRITIETVERIEVET 73 Query: 80 S---DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTY 130 ++ IK ++ ++++QK+ E+G + R V+ Q ++R + Sbjct: 74 ELPLNITICSGLIKGDKYEWLLQKATELGATSFIITQMDRSVVKLNQQKAAKKVERWQKI 133 Query: 131 TISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL----EKLHAIA 185 AAEQ +P + + L E ++C ++ A E +N ++L Sbjct: 134 VKEAAEQSYRQAVPQVKFVSNLHEIYDMIGQYDC-VLMAYEAAAKQNERALFKQQLRQFK 192 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 H +V +L GPEGG+ E + + LGPRILR++TA + A++ + Sbjct: 193 HGSHVLLLFGPEGGFSENEIALFEDVA--QSVGLGPRILRAETAPLYALSAI 242 >gi|308189971|ref|YP_003922902.1| hypothetical protein MFE_04220 [Mycoplasma fermentans JER] gi|319777253|ref|YP_004136904.1| chp protein [Mycoplasma fermentans M64] gi|307624713|gb|ADN69018.1| conserved hypothetical protein [Mycoplasma fermentans JER] gi|318038328|gb|ADV34527.1| CHP protein [Mycoplasma fermentans M64] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 13/156 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTI--SAAEQCDILT 142 IK R ++++QK+ E+G+ I P ++YT +N + R I +AAEQ Sbjct: 76 IKIKRFEWILQKATELGVTTIIPFASKYTDAKILKYEFNSKQNRFNEIIKNAAEQSFRNI 135 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P++ LE ++K + + EN +K + I + + +++GPEGG+ Sbjct: 136 IPYLTKIMNLEEIIKTYPT------MQKYLAYENQDQKNNIITYPTSSILIVGPEGGFSP 189 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EE E L + SLG ILR++TA + +A ++ Sbjct: 190 EEIE-LAKENNIKITSLGKTILRAETACLYMLANIK 224 >gi|238809922|dbj|BAH69712.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 13/156 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTI--SAAEQCDILT 142 IK R ++++QK+ E+G+ I P ++YT +N + R I +AAEQ Sbjct: 82 IKIKRFEWILQKATELGVTTIIPFASKYTDAKILKYEFNSKQNRFNEIIKNAAEQSFRNI 141 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P++ LE ++K + + EN +K + I + + +++GPEGG+ Sbjct: 142 IPYLTKIMNLEEIIKTYPT------MQKYLAYENQDQKNNIITYPTSSILIVGPEGGFSP 195 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EE E L + SLG ILR++TA + +A ++ Sbjct: 196 EEIE-LAKENNIKITSLGKTILRAETACLYMLANIK 230 >gi|51244548|ref|YP_064432.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54] gi|50875585|emb|CAG35425.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54] Length = 158 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTYTISAAEQCDILTLPFIY 147 +D +IQK E+G P +Q +R + ++ A +QC + Sbjct: 1 MDLVIQKCTELGAEVFIPYDAARSQGKLDASQARKKQERWQRISLEACKQCMRPQPMTVA 60 Query: 148 PPTTLEFLLKNWD---HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 P + L+ +++F +E S +L L +A V I++GPEGG EE Sbjct: 61 SPASFVDLVTAESVEGPRLKLIFWEEE--SATNLYNLPGLADASGVDIILGPEGGISREE 118 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E + + T +SLG RILR++TAA+ A+ LVQ + G+ Sbjct: 119 IEIARAHGWQT-VSLGQRILRAETAAIVALTLVQYLTGN 156 >gi|315658147|ref|ZP_07911019.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|315496476|gb|EFU84799.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 253 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 15/167 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 IK ++ ++M+QK+ E+G R V+ +DR + AAEQ LT Sbjct: 89 IKADKYEWMLQKATELGANEFWAVDMARSVVKLNQTKAMKKIDRWQKIVKEAAEQSYRLT 148 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PN--VAILIGPEG 198 +P + + L+ + H I+ A E +N + PN V ++ GPEG Sbjct: 149 IPSVKYMSNLKAVYDKISHYDYILIAYEEQAKQNERSHFRQLLQCFKPNDHVLMIFGPEG 208 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALVQAICG 242 G E E + LGPRILR++TA A++AM+ + G Sbjct: 209 GLTESEIEMFKDNSHT--VGLGPRILRAETAPLYALSAMSYENELLG 253 >gi|325688555|gb|EGD30572.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK72] Length = 250 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 11/224 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KEGD + L + L+++ + I VE + + V Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFDDGMKRLARVLDPSQQILEIVEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G AI ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGTSAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAILIGP 196 +P + +F D +C I+ +E+ S + L +A V + GP Sbjct: 140 NLIPEVRLFDKKADFQAALADFDCIIIAYEESAKEGESAALVRALSGLAAGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 EGG EE V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242 >gi|297559680|ref|YP_003678654.1| hypothetical protein Ndas_0703 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844128|gb|ADH66148.1| protein of unknown function DUF558 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 245 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 15/229 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G + + A V R++EG+ + L +G+ ++ VG I V + + + Sbjct: 22 GAEGRHAAVVRRIREGETVDLSDGRGLRARCTVTAVGGDHIVCAVVERREEPAPRPRLTV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAEQC 138 + + K +R + ++ E G A+ P +TR+ + + + R AA+Q Sbjct: 82 VQALPKGDRGELAVEMMTEAGADAVVPWAAERCVTRWKGDRAAKALAKWRATAREAAKQA 141 Query: 139 DILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 LP + T + LL D +V ++ + LE + +V +++G Sbjct: 142 RRARLPEVADLADRTAVVELLAGADLG--VVLHEDGASRLSQLEP--PVGQDADVVVVVG 197 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 PEGG+ E E + V L LGP +LR+ TA VAA++++QA G W Sbjct: 198 PEGGFSDAELEAFDAAGAVRAL-LGPSVLRTSTAGVAALSVLQARTGRW 245 >gi|289550652|ref|YP_003471556.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus lugdunensis HKU09-01] gi|289180184|gb|ADC87429.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus lugdunensis HKU09-01] Length = 250 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 15/167 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 IK ++ ++M+QK+ E+G R V+ +DR + AAEQ LT Sbjct: 86 IKADKYEWMLQKATELGANEFWAVDMARSVVKLNQTKAMKKIDRWQKIVKEAAEQSYRLT 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PN--VAILIGPEG 198 +P + + L+ + H I+ A E +N + PN V ++ GPEG Sbjct: 146 IPSVKYMSNLKSVYDKISHYDYILIAYEEQAKQNERSHFRQLLQCFKPNDRVLMIFGPEG 205 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALVQAICG 242 G E E + LGPRILR++TA A++AM+ + G Sbjct: 206 GLTESEIEMFKDNSHT--VGLGPRILRAETAPLYALSAMSYENELLG 250 >gi|258424005|ref|ZP_05686887.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257845626|gb|EEV69658.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 250 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 16/221 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86 H++ +V+R I+L +L +I+ + S + V+ + + DV Sbjct: 25 HHITNVMRYDVSSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++++QK+ E+G + R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 L +P I + L+ + D+ I+ A E + L + L V ++ GP Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + T + LGPRILR++TA + A++ + Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242 >gi|254827758|ref|ZP_05232445.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258600138|gb|EEW13463.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 255 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 15/218 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G+ +H++ V+RMKE D + + ++ I+ + F + + + ++ Sbjct: 20 TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNVLKWLEEDTELPIEI 79 Query: 85 IFSP--IKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 + K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L + P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229 GPEGG EKE + L+ LGPRILR++TA Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235 >gi|325859585|ref|ZP_08172718.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS 18C-A] gi|325482865|gb|EGC85865.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS 18C-A] Length = 259 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 24/228 (10%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSD-VQYIFSPIK- 90 VLR+KEGD + L +G+ + +++ K + + R + S + +P K Sbjct: 28 RVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYTIRQTMRQKPAWSGRIHLAIAPTKD 87 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 R+++M +K+ E+G I + R+++ DR+ +SA +Q P + P + Sbjct: 88 MGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADRIEKIVVSAVKQSRKGWKPLVNPMS 147 Query: 151 TLEFLLKNWDHN-----C----QIVFADETCGSENSLEK-------LHAIAHIP----NV 190 + ++N C +I D ++L+ L A P ++ Sbjct: 148 SFISFVENCPDKGRKFICHCYPEIPRTDFFTAITSALQPGIFLQNGLEAQKEHPSGAADI 207 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +LIGPEG + EE + F + ++LG LR++TA ++A+ + Q Sbjct: 208 TVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRTETAGLSAVMMSQ 254 >gi|66361363|pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A Resolution gi|66361364|pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A Resolution Length = 234 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 108/212 (50%), Gaps = 29/212 (13%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-----IFSP 88 V+R+KEGD I DG S + + KS++ K + ++ + + + P Sbjct: 37 RVVRLKEGDVI---EATDGNGFS-YTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVP 92 Query: 89 I-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLPFI 146 I + R ++I+K VE+G+ I ++ ++ H ++D+ + AA+QC ++ Sbjct: 93 IGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKAKIVVREAAKQCK----RYL 146 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSEEK 205 +P + L+ + + ++ D S+N L+ A++ ++ +++GPEGG+ +E+ Sbjct: 147 FPKVSF---LEKLEFSGNVITLD-LDASQNLLD-----ANLEGSITVVVGPEGGFSEKER 197 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L S T +SLG +ILR +TAA+ + + Sbjct: 198 ELLRSST--TIVSLGKKILRFETAAILTVGYI 227 >gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894760|gb|EFG74486.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 240 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 13/234 (5%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69 +VD I GD+ + A V R++ G+ ++L +G G ++ + G+ +R +V Sbjct: 7 YVDALPDIGALAAVDGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRARV 66 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYN 123 + + V + + K+ R + ++ + E G A R V + Sbjct: 67 LERWTVAPARPPVTVVQALPKSERSELAVELATEAGADAFLAWQSARCVASWQGPRVDKG 126 Query: 124 MDRVRTYTISAAEQCDILTLPF---IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R R SAA Q +P + L ++ +V A S+ L Sbjct: 127 LRRWRAVARSAARQSRRAHIPAVDGVLSTAELTGRVRAASAAGSVVLALHESASDR-LAD 185 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 H +A +V +++GPEGG EE L V + LGP++LR+ TAA A+ Sbjct: 186 SH-VAQADSVWLVVGPEGGIAPEEIAALTDAGAVA-VGLGPQVLRTSTAAAVAL 237 >gi|329296976|ref|ZP_08254312.1| hypothetical protein Pstas_11162 [Plautia stali symbiont] Length = 209 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 16/188 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYI 85 D +++ VLRM G I LF+G + + ++I+ K R KV+ S+ ++S + Sbjct: 23 DAANHVDRVLRMSAGQQIELFDGSNLTFSAQITQADKK-RVKVKVLASQPDDRKSPLHLH 81 Query: 86 FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137 + + ++++ IQKS+E+G+ I P+ + + + + + I+A EQ Sbjct: 82 LGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDAERLAKKIQQRQKIAIAACEQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI-GP 196 C +P I TLE D ++ S N+L + + V +LI P Sbjct: 142 CGRNRVPEIRAAMTLEAWCAEADDGLKLNLHPRASHSINTLPQ-----PVKRVRLLIDDP 196 Query: 197 EGGYHSEE 204 EGG +EE Sbjct: 197 EGGLSAEE 204 >gi|289450255|ref|YP_003475043.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184802|gb|ADC91227.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 246 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 37/229 (16%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 H+L +V R G+ +LL + + S++ GK+ K + T+ Y+ + Sbjct: 25 HHLCNVQRALSGEKVLLVDKSGRRFFSEL---GKNGCVKRMGDCLADTEPPYRVYLIQGM 81 Query: 90 -KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS------------AAE 136 K ++ ++++QK VE+G P+ N ++ RV+ +S AA Sbjct: 82 PKGDKWEFILQKGVELGATDFYPL------NLQRSIARVKKEDLSKKVIRWNKIIAAAAL 135 Query: 137 QCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCGSENSLEKLHAIAH------I 187 Q P I+P T L+ + + ++V +E E SL AI+ I Sbjct: 136 QSGRTGCPIIHPVTDLKACVAELALLPNTLRVVAWEE----ERSLSLADAISDYRKHCGI 191 Query: 188 P-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 P ++ I+IGPEGG ++E L F +SLG RILR++TA + A+A Sbjct: 192 PEHICIVIGPEGGLAADEIGVLKESGFQV-VSLGRRILRTETAGIMALA 239 >gi|15644132|ref|NP_229181.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga maritima MSB8] gi|4981941|gb|AAD36450.1|AE001791_12 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 222 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 30/218 (13%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY--- 84 + H++ V+R+KEGD I DG S + + KS++ K + ++ + + Sbjct: 20 EAHHM-RVVRLKEGDVI---EATDGNGFS-YTCILKSLKKKTAAAKIVKVEEKEKEPTEK 74 Query: 85 --IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDI 140 + PI + R ++I+K VE+G+ I ++ ++ H ++D+ + AA+QC Sbjct: 75 LSVVVPIGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKAKIVVREAAKQCK- 131 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGG 199 +++P + L+ + + ++ D S+N L+ A++ ++ +++GPEGG Sbjct: 132 ---RYLFPKVSF---LEKLEFSGNVITLD-LDASQNLLD-----ANLEGSITVVVGPEGG 179 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +E+E L S T +SLG +ILR +TAA+ + + Sbjct: 180 FSEKERELLRS--STTIVSLGKKILRFETAAILTVGYI 215 >gi|254253271|ref|ZP_04946589.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158] gi|124895880|gb|EAY69760.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158] Length = 303 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 46/244 (18%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDALALFDGTGGQYRARL------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 +E RS Q D F P + +++D++I+K+VE+G+ A+ Sbjct: 61 ----IEIDKRSALAQIDG---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 P V+ + + R ++ EQC +P + P L F W Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPHVAP--VLGF--NAWLDAL 169 Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPL 217 AD S A +P+ A +LIGPEGG +E+ + F T L Sbjct: 170 PAAPADGELRLLLSPRASIPFASLPDAAPAAPVTLLIGPEGGLSPDEESAARARGF-TAL 228 Query: 218 SLGP 221 S P Sbjct: 229 SARP 232 >gi|294785209|ref|ZP_06750497.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27] gi|294486923|gb|EFG34285.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQ 83 GD H + +V R +GD I +G + E+L +I + K I+ K+ E S + ++ Sbjct: 20 GDINH-IKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEIN 77 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 S +K +++D IQK E+G+ I P+ + R DR + A +QC + Sbjct: 78 AGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVV 137 Query: 143 LPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194 I ++ L LK++D N + +F + L + P + +I Sbjct: 138 PTAIDEVKKIDKLDLKDYDLILVPYENEKEIFIKDI---------LRNLKVKPTKILYII 188 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G EGG+ EE + L +SLG RILR++TAA+ ++ Sbjct: 189 GAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|323697889|ref|ZP_08109801.1| protein of unknown function DUF558 [Desulfovibrio sp. ND132] gi|323457821|gb|EGB13686.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans ND132] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 19/223 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ-TKQSDVQ 83 SG + ++ +LR + + LF+G + L + + K+ + + + Sbjct: 25 SGPEARHMGTILRTERSQTVRLFDGHGRDGLFTVRDIAKNRAELEALELAEHPASATGLT 84 Query: 84 YIFSPIKTNRLDYMIQKSVEM-GMGAIRPVITRYTQNTHYNMDRVRTYT---ISAAEQCD 139 K+ R DY+++K+VE+ G G I R +Q + + D T+T + AA+QC Sbjct: 85 LAIGWGKSKRRDYLLEKTVELQGAGLIFWQAAR-SQGSLPD-DPKETWTEKFVQAAKQCG 142 Query: 140 ILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILI 194 + LP + + L L +DH C + + +E ++ L + ++I Sbjct: 143 AVWLPELDTVSGGVDGLIPLAGRFDH-CYLAWE-----AEEAVTPLSPVMLSKGRTLVVI 196 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ +E + L F P++LGP ILR +TAAV ++L Sbjct: 197 GPEGGFDPDEADRLVRAGF-GPVTLGPSILRWETAAVYCLSLA 238 >gi|262039461|ref|ZP_06012765.1| YqeU [Leptotrichia goodfellowii F0264] gi|261746528|gb|EEY34063.1| YqeU [Leptotrichia goodfellowii F0264] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 12/208 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ--TKQSDVQYIFS 87 +++ +V R+ +GD + + +G + E+L++I+ + K + + + ++ Sbjct: 25 NHVQNVFRLGKGDGLRVIDG-EFEYLTEITNIAKKEIKLKIIKKNTDNYSLNINIDAAIG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++ I+K E+G+ I P+ T R + ++ A +QC + I Sbjct: 84 ILKNEKMNMTIKKLTEIGVSKIIPLQTERVVVKINEKKEKWDITVREALKQCKGVKFTEI 143 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGGYHSEE 204 P T L+ + N++ +IV+A E S+N+ E L I + N+ ++GPEGG EE Sbjct: 144 VPVTKLQSI--NYELYDKIVYAYEN--SDNT-EPLVNIVNKNDKNILYIVGPEGGITEEE 198 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVA 232 L T +SLG RILR++TAA+ Sbjct: 199 VNFLKE-KGATEISLGKRILRAETAAIV 225 >gi|71894105|ref|YP_278213.1| hypothetical protein MS53_0081 [Mycoplasma synoviae 53] gi|71850893|gb|AAZ43502.1| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 12/156 (7%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYN-MDRVRTYTISAAEQCDILT 142 IK R +++I+K+ E+G+ I P +++TQ N N +R AAEQ Sbjct: 76 IKFERFEWLIEKATELGVFEIVPFYSQFTQKHKLLNQFQNKKNRFEKIIKFAAEQSFRNI 135 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P + E LL N+ N ++V A E ++N L+ + ++ + IG EGG+ S Sbjct: 136 IPNLKDPISFEDLL-NFYVNQKLV-AHEISDNQNF--DLNLLTK-NDLLLTIGSEGGFSS 190 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +E F + LG ILRS+TAA++ ++ V+ Sbjct: 191 DEIAKFKEANF-KVIHLGKTILRSETAAISLISKVK 225 >gi|284036271|ref|YP_003386201.1| hypothetical protein Slin_1352 [Spirosoma linguale DSM 74] gi|283815564|gb|ADB37402.1| protein of unknown function DUF558 [Spirosoma linguale DSM 74] Length = 239 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 38/239 (15%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTK 78 TQ D H + LR++ GD I + +G ++ + I + F+++ + + Sbjct: 15 TQHLTEDDSRHAI-KTLRLRAGDAITVTDGHGNQYAAVIHETDLRQCAFRIKAVQTTPPR 73 Query: 79 QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 V+ +P K +R+++ ++K+VE+G+ I ++++ ++R+ I+A +Q Sbjct: 74 PFSVRICVAPTKNLDRIEWFVEKAVEVGIERISFFFGQHSERRVLKLERIEKIAIAAMKQ 133 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP------NVA 191 LP + + +LK T G E IAH+P N+A Sbjct: 134 SLQSFLPKLDDAVSFGEMLK-------------TIGDEQRF-----IAHLPANQPLVNLA 175 Query: 192 ----------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +LIGPEG + E + + F +LGP LR++TAA+ A ++ I Sbjct: 176 KQATEAGQYVVLIGPEGDFSDTEIQQALAAGFQVA-TLGPNRLRTETAALTACQILNFI 233 >gi|169497329|gb|ACA58045.1| hypothetical protein ACU_0003 [uncultured bacterium] Length = 180 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 Q HYL +VLR+K GD +L FNGKDGEW + ++ GK ++ Q+R QT+ D Sbjct: 128 QAHYLRNVLRLKPGDGVLAFNGKDGEWQAALA-DGKRTALVLQEQTRPQTEPQD 180 >gi|206900758|ref|YP_002251046.1| hypothetical protein DICTH_1217 [Dictyoglomus thermophilum H-6-12] gi|206739861|gb|ACI18919.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 247 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 28/227 (12%) Query: 27 DQYHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQ 83 D +H L +VLR++EG+ I + +N K E +YV + + K+ + + K+S+V+ Sbjct: 23 DIFH-LVNVLRVREGEKINVNYNLKIYE-----TYVERIEKDKIVCRIIGELEDKESNVE 76 Query: 84 -YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR---VRTY------TI 132 Y+ + K + +++K E+G+ P+ TQ + N+ + V+ Y Sbjct: 77 VYLCQSLPKRESWEIILEKCTEIGVVGFIPL---QTQRSIVNLSKDGLVKKYERWNKIIR 133 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPN-V 190 A +QC LP +Y +LE L + + IV A E G+E L+ + I + + Sbjct: 134 EAVKQCGRNRLPLLYQVKSLEECLSLAREKDFDIVVAWE--GAELGLKDIMNRREIKDKI 191 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IGPEG + EE E + + ++GPRIL+ +TAA+ A AL+ Sbjct: 192 FLFIGPEGSFADEEIELMKKYGGIF-FNMGPRILKVETAAIVASALL 237 >gi|237742212|ref|ZP_04572693.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845485|ref|ZP_05550943.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|229429860|gb|EEO40072.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256719044|gb|EEU32599.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQ 83 GD H + +V R +GD I +G + E+L +I + K I+ K+ E S + ++ Sbjct: 20 GDINH-IKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEID 77 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 S +K +++D IQK E+G+ I P+ + R DR + A +QC + Sbjct: 78 AGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDIISKEALKQCQGVV 137 Query: 143 LPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194 I ++ L LK++D N + +F + L + P + +I Sbjct: 138 PTAIDEIKKIDKLDLKDYDLILVPYENEKEIFIKDI---------LRNLKVKPTKILYII 188 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G EGG+ EE + L +SLG RILR++TAA+ ++ Sbjct: 189 GAEGGFEKEEIDYLKE-NGAKIVSLGKRILRAETAAIVTGGVI 230 >gi|34763185|ref|ZP_00144151.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887154|gb|EAA24259.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQ 83 GD H + +V R +GD I +G + E+L +I + K I+ K+ E S + ++ Sbjct: 20 GDINH-IKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEID 77 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 S +K +++D IQK E+G+ I P+ + R DR + A +QC + Sbjct: 78 AGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVV 137 Query: 143 LPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194 I ++ L LK++D N + +F + L + P + +I Sbjct: 138 PTAIDEIKKIDKLDLKDYDLILVPYENEKEIFIKDI---------LRNLKVKPTKILYII 188 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G EGG+ EE + L +SLG RILR++TAA+ ++ Sbjct: 189 GAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|326335942|ref|ZP_08202119.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691906|gb|EGD33868.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 268 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 6/214 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++ VLR K GD + + +G+ + I + K ++ + + + Sbjct: 46 EESTHIHRVLRRKIGDLLYITDGRGNLYEGVIQDINDKKCSIVIQSCTLTPPLPYQLHLA 105 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R ++ ++K+ E+G+ I P+I +++ ++R +SA +Q P Sbjct: 106 VAPTKMNERYEWFLEKATEIGVHEITPIICEHSERKTVKIERFEKIILSAMKQSLQCFRP 165 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLHAIAH--IPNVAILIGPEGGYH 201 + P + L N H A G + L +KL H I ++ I+IGPEG + Sbjct: 166 ILNKPINMLNWLDNNIHEKNRFIAHCQEGKKELLFDKLSTSYHNNIRDILIIIGPEGDFS 225 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +E + F +P+ L LR++TAA+ A + Sbjct: 226 EKEIQKAIQKNF-SPVILSSNRLRTETAAIVACS 258 >gi|284055742|pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From Porphyromonas Gingivalis gi|284055743|pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From Porphyromonas Gingivalis Length = 257 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I+ + D+ ++ VLR + GD + L +G+ + + I KS V Q Q Sbjct: 13 IEQSDRLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 72 Query: 77 TKQSD-VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 D + +P K + R ++ ++K VE+G+ + + + +++ +R+ ISA Sbjct: 73 KPWRDRITIAIAPTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 132 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHA--IAHI-PN 189 +Q + P I ++ ++ + I + DE +E + + + H+ + Sbjct: 133 XKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 V ILIGPEG + E E+ F P+SLG LR++TA + A Sbjct: 193 VLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVA 235 >gi|269123850|ref|YP_003306427.1| hypothetical protein Smon_1088 [Streptobacillus moniliformis DSM 12112] gi|268315176|gb|ACZ01550.1| protein of unknown function DUF558 [Streptobacillus moniliformis DSM 12112] Length = 233 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 34/221 (15%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYI 85 + +++ +V R+KE D + + D E+ Y G K I K S S K+ + Sbjct: 21 EINHIKNVFRLKENDEVRVI---DFEY----EYKGIVKEINKKNILISISDKKEDNYSLS 73 Query: 86 FSP------IKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQC 138 F+ +K ++ +IQK E+G+ I P+ T R + ++ + +QC Sbjct: 74 FNLDVAIGLLKNEKMKLLIQKLTELGIRNIIPLKTERVVVKINEKKEKWDLVVRESMKQC 133 Query: 139 DILTLPFIYPPTTLEFL-------LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 + T +E L +N+D +I++A E S +L+++ N+ Sbjct: 134 RAI------KKTNVEILNEIKRIKYENYD---KIIYAYENSESSLNLKEIIK-KEDSNIL 183 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ++IGPEGG+ +E + L S+ + +SLG RILR++TAA+ Sbjct: 184 LIIGPEGGFTKDEVKYLKSIGAI-EISLGKRILRAETAAIV 223 >gi|227529148|ref|ZP_03959197.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis ATCC 49540] gi|227350992|gb|EEJ41283.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis ATCC 49540] Length = 251 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 18/245 (7%) Query: 7 LKRLFVDFPLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F+D KT GK + H+L VLR G L +L+++ + Sbjct: 1 MQRYFIDQS---KTAGKVILPEEVAHHLVTVLRAAVGTKFELVMADHQAYLAELISITPG 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITR 115 ++ + + V+ I + P + + ++QK E+G I R + Sbjct: 58 NVIAKLIENLGKDSELPVKTILACGLPKTKEKPELIVQKGTELGADKIVFFEAERSISHW 117 Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +Q + R++ +AAEQ P I +L+ LL N+ ++V +E+ Sbjct: 118 NSQKQPRKIARLQKIADAAAEQSHRNVKPQIEYCPSLKQLLANYPATIRLVAWEESAKEG 177 Query: 176 NSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S A+A + ++ + GPEGG S E T+ + P+ GPRILR++TA + Sbjct: 178 ESSRLFQALAKLQTGDSILAIFGPEGGLSSAEV-TIMEENGIIPVGFGPRILRTETAPLY 236 Query: 233 AMALV 237 +A V Sbjct: 237 FLATV 241 >gi|223938953|ref|ZP_03630839.1| protein of unknown function DUF558 [bacterium Ellin514] gi|223892380|gb|EEF58855.1| protein of unknown function DUF558 [bacterium Ellin514] Length = 251 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 15/223 (6%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-IF 86 + H+ VLR++EG+ +++ +G E L + K + K++ R+ Q Q +F Sbjct: 22 EAHHALQVLRLREGEKLVVLDGAGQEILCEAQKAEKD-QLKLKVLQRNFQPQLPYQITLF 80 Query: 87 SPIKTNRL-DYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 I ++ + +IQK+ E+G I P+++ + +++ + I A +QC Sbjct: 81 QAIPKGKIIETIIQKATELGAFRIVPLLSDRVVTQLDDEGAASKVEKWKQTAIEAIKQCG 140 Query: 140 ILTLPFIYPPTT-LEFLLKNWDHNCQIV--FADETCGSENSLEKLH-AIAHIPN-VAILI 194 LP + P + ++L + ++ ++ + H +P V+I I Sbjct: 141 SPWLPQVDAPVSPKDYLARGEKFELPLIGSLQNDCRHPREYFKTFHNERKRLPKTVSIWI 200 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEG + E + S V P++LG +LRS+TAA+ +++++ Sbjct: 201 GPEGDFTPAEMNLIKSA-GVLPITLGKLVLRSETAAIYSLSVL 242 >gi|124023129|ref|YP_001017436.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9303] gi|123963415|gb|ABM78171.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. MIT 9303] Length = 258 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 11/214 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYI 85 D+ HYL VLR++ G + + +G W + + G ++ S Q + Q Sbjct: 29 DEVHYLRRVLRLRNGQAVAVVDGVGHFWEAHLQ-AGDFLKLDTSPSSPCLQQPRHRQQLA 87 Query: 86 FSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTL 143 + + R + +++ S E+G+ I+P+ + R T R + A EQ + L Sbjct: 88 LAVVIPKRGFEEVLRMSCELGVNRIQPLRSDRCTPQAEDRPLRWKVILREAVEQSEQLWQ 147 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--SLEKLHA--IAHIPNVAILIGPEGG 199 P + P L K+ VFA T + L+ L I V + IGPEGG Sbjct: 148 PELLPIAEASSLWKS--APVHAVFALATTRRQGLIDLQLLMEGLTPEINQVTVAIGPEGG 205 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + E+ + +V P++LG ILR+ TAAVAA Sbjct: 206 WSPIEECAAEAAGWV-PVALGDSILRTCTAAVAA 238 >gi|226356335|ref|YP_002786075.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus deserti VCD115] gi|226318325|gb|ACO46321.1| Conserved hypothetical protein [Deinococcus deserti VCD115] Length = 238 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 30/219 (13%) Query: 34 HVLRMKEGDNILLFNGKDGEWLS---------KISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +VLR+ G +L+F+G+ + + I ++G+SI E T Q + Sbjct: 34 YVLRLSPGAEVLVFDGQGAQAQATVVELDAARAILHLGESIGAAAE------TPQP-LTL 86 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCD-I 140 + +K ++L +++ + E+G+ ++ ++TR + R+ A++Q Sbjct: 87 AVALLKGDKLADVVRAATELGVARVQLLVTRRADAREIGAQKLSRLNRIAEEASKQSRRA 146 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +T P + P T +F W+ Q+ A GS L + H P V +L GPEGG Sbjct: 147 VTPPVLNPVTLADF---QWE--GQLFVAQ--PGSSLRLTQ-HLDWSAP-VTVLTGPEGGL 197 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +EE L + ++ ++LGPRILR++TA VA + + A Sbjct: 198 TTEEVNQLTAKGALS-VTLGPRILRAETAPVALLGAIAA 235 >gi|322434914|ref|YP_004217126.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9] gi|321162641|gb|ADW68346.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9] Length = 255 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 45/236 (19%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQ 76 T +GDQ +LA VLR + G +F+ +L + S + F + + S Sbjct: 18 THAALTGDQAAHLARVLRAQPGQ---IFDVVAAGFLHRAEITAVSPERVDFLLHEELESD 74 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYT 131 + + + K + L++ I+K+ E+G I P++ R T Q ++R R Sbjct: 75 SALP-LHLYLAIFKFDHLEWAIEKATELGAAKITPILARRTEKHLAQAAAKRVERWRRIA 133 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD------------------ETCG 173 A++Q + P I PT L+ L+ +I+ ++ ET Sbjct: 134 HEASQQSRRTSTPEISDPTPLKQALERETAPHRILLSETEQSLTLSTALGAPRLDSETWD 193 Query: 174 S--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE--TLHSLPFVTPLSLGPRILR 225 NS E HA+A IGPEGG+ EE T H VT LGPRILR Sbjct: 194 GIPSNSQEITHALA--------IGPEGGWTPEEMSLFTHHQWTHVT---LGPRILR 238 >gi|121997724|ref|YP_001002511.1| hypothetical protein Hhal_0933 [Halorhodospira halophila SL1] gi|121589129|gb|ABM61709.1| 16S rRNA m(3)U-1498 methyltransferase [Halorhodospira halophila SL1] Length = 240 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 29/204 (14%) Query: 41 GDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMI 98 GD + LFNG+ GE S++ V + ++ + VQ + + K R+D + Sbjct: 34 GDAVTLFNGEGGEHPSEVVAVERRRVTVRVGAHDPTERELPAAVQLLQAVGKGERMDTAV 93 Query: 99 QKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI---SAAEQCDILTLPFIYPPTT 151 +K+ E+G+ I PV+T T + R R + +A EQC T P + P Sbjct: 94 EKATELGVSEIVPVLTERTVVRLNDPQRAAKRRRHWEAVARAACEQCGRNTPPRVAEPVP 153 Query: 152 LEFLLKNWDHNCQIVF-------ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 L + W H+ AD +L + ++LIGPEGG E Sbjct: 154 L---AQAWGHSRDYPLRLTLDPLADP---------RLSELTGAQATSLLIGPEGGLSPTE 201 Query: 205 KETLHSLPFVTPLSLGPRILRSDT 228 E F+ +GPR+LR++T Sbjct: 202 LEAAGEHGFLR-GRVGPRVLRTET 224 >gi|254442333|ref|ZP_05055809.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae bacterium DG1235] gi|198256641|gb|EDY80949.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae bacterium DG1235] Length = 255 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 16/228 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D+ ++L R + GD + +F+GK E +++S K R ++ +S Q Sbjct: 22 SPDESNHLIAANRARVGDPVRVFDGKGNEGNARVSVANKR-RAVLKIESICTLPPPPYQI 80 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136 + K ++ +I+K+ E+G+ I P+ITR + + T+ A+ Sbjct: 81 ALAQALPKGKLIETIIRKATEIGIQQIFPLITRRVELKIEPKKEDSKNAKWTAATLEGAK 140 Query: 137 QCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKL---HAIAHIPNV 190 Q L I P L LL + +D +T + LE+ H + +V Sbjct: 141 QSGNPHLLKIEPICDLNSLLNQSEGFDLKLIASLTTDTTSLKKQLERYQSEHNGSSPKSV 200 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L+GPEG + EE + + F+ P +LG ++RS+TAA A+++ Q Sbjct: 201 LWLVGPEGDFTPEETQISINAGFL-PTTLGRYVMRSETAATHALSITQ 247 >gi|86141368|ref|ZP_01059914.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis MED217] gi|85831927|gb|EAQ50382.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis MED217] Length = 237 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 6/210 (2%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85 D+ ++ VLR + GD + + NG + ++I S + K+ + Q + Sbjct: 21 DESKHIVKVLRKRTGDVLDITNGSGNFFKAEIISASPSNCTVKILEVTSEQPLPYHLHLA 80 Query: 86 FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +P K N R + ++K+ E+G+ I P+I +++ +R SA +Q +P Sbjct: 81 VAPTKLNDRFELFLEKATEIGISEISPIICDHSERKVIKEERYERIIQSAMKQSLKAHIP 140 Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + + +FL N A C N + +V ILIGPEG + Sbjct: 141 KLNEAQSFSDFLETTKTFNGDRFIAH--CEETNRFSLKQKLQPKRDVLILIGPEGDFSPS 198 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E F +P+ LG LR++TAA+ A Sbjct: 199 EIEQAIQAGF-SPVMLGESRLRTETAAIVA 227 >gi|75764072|ref|ZP_00743673.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488442|gb|EAO52057.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 221 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 19/213 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62 ++R FV+ + + + GD H++A V+RM GD I NGK + +I+ ++ Sbjct: 1 MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 +I VE+ S V K ++L+ + QK E+G A P ++ Sbjct: 61 TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173 + ++R+R AAEQ +P ++ P + + LL +D C + + +E Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176 Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEE 204 E S + L + + I+ GPEGG EE Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEE 209 >gi|148377635|ref|YP_001256511.1| hypothetical protein MAG_3690 [Mycoplasma agalactiae PG2] gi|148291681|emb|CAL59067.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 227 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 17/158 (10%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYN--MDRVRTYTISAAEQCDILT 142 IK R ++++QK+ E+G+ I P+ +++ T +N +DR +AAEQ Sbjct: 75 IKIKRFEWLLQKATELGVSRIIPMNSKFVDQTIIKYEFNKKIDRFNEIIKNAAEQSFRNA 134 Query: 143 LPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P + T E +L N D +I A E E+ ++K+ N +++GPEGG Sbjct: 135 VPKLEKIATFEEIILSNRDK--KIYVAYENKEVESQIDKIET-----NSILIVGPEGGLS 187 Query: 202 SEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E + L + F+ +SLG ILR++TA + ++ V+ Sbjct: 188 KGEIDFALQNNCFI--VSLGKTILRAETACIYMLSNVR 223 >gi|332638183|ref|ZP_08417046.1| hypothetical protein WcibK1_05770 [Weissella cibaria KACC 11862] Length = 248 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 16/223 (7%) Query: 26 GDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 D H+L VLR K G ++ ++ ++K+S +G + + + VQ Sbjct: 19 ADIAHHLMTVLRGKVGTMAEFVYPDRETMVVAKVSEIGDDVTRMTVVERVEANVELPVQA 78 Query: 84 -YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD------RVRTYTISAAE 136 I K ++ + ++QK+ E+G+ I V T ++ H+ M R+ AAE Sbjct: 79 TLILGLAKGDKPELVVQKATELGVHHIIFVETDWS-VVHWGMKADKKIARLAKIAQGAAE 137 Query: 137 QCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAI 192 Q LT+P + Y P L + +IV +E+ + A + + VA Sbjct: 138 QSHRLTVPDVQYLPNLQALTLP--EAMIKIVAWEESAKQGEAAMLAQQFAQLRSGDEVAF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L+GPEGG E E L LGPRILR++TA + A++ Sbjct: 196 LVGPEGGLKEAELELLTEKFGFVAAGLGPRILRAETAPLYALS 238 >gi|242310102|ref|ZP_04809257.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523399|gb|EEQ63265.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 20/220 (9%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K G+ YH++ R K+ +++ L N KD ++ I+ + K + QS T + Sbjct: 15 KLEGETYHHIFQSRRTKKSESLHLRNLKDSNLYIYNITNLSKK-DATLTLQSSQNTPLKN 73 Query: 82 V---QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137 I++ I ++ + E+ + I Y+Q N N++R++ ++ EQ Sbjct: 74 PPKGHLIWAMIDPKNIEKTLPFLNELNLQKITFFYAEYSQKNFKLNLERIQRILENSCEQ 133 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C +TL I L+ +L+ + + + F E + SLE + IL+G E Sbjct: 134 CGRITLLEIEVLENLQEVLEKYPNAGVLDFGGEE--PKCSLE----------IPILVGTE 181 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GG+ +E+E L + P T S ILRS+TAA+ A+A + Sbjct: 182 GGFSKKEREALKNNPKYTATSCN--ILRSETAAIYAIARI 219 >gi|225375403|ref|ZP_03752624.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM 16841] gi|225212739|gb|EEG95093.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM 16841] Length = 162 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 94 LDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 ++++IQK+VE+G+ + PV + + + R + SAA+Q +P + Sbjct: 1 MEWIIQKTVELGVYEVIPVAMKNCVVKLDDKKAKSKVTRWQAIAESAAKQSKRSLIPEVK 60 Query: 148 PPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P + E + + ++V + G + + I ++A+ IGPEGG+ EE E Sbjct: 61 MPMSYKEAVAYAKKLDVKLVPYENEHGMAGTKAAMEQIKKGESIAVFIGPEGGFAPEEIE 120 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +SLG RILR++TA + A+A++ Sbjct: 121 MVRD--EMQLISLGRRILRTETAGIVALAIL 149 >gi|168701569|ref|ZP_02733846.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 237 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 23/213 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+L V R +GD +++FNG ++ ++I GK + + ++ Sbjct: 19 TGPEAHHLVAVRRFGDGDEVVVFNGDGNDYPAQILSAGKKSVVLLVREPVFVNRELPFPV 78 Query: 85 IFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNM-DRVRTYTISAAEQCDI 140 + + K +R D++++K E+G+ P+IT R ++ ++ I A++QC Sbjct: 79 VVASALPKGDRADFLVEKLTELGVNRFIPLITTRAVVLPKVSVVEKFGRAVIEASKQCGR 138 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-----ILIG 195 L + P + WD + AD L LH + + + +G Sbjct: 139 NCLMQVDAP-------QKWD--SFVARAD----LPQPLTILHTGPGLVGASGAGGTLAVG 185 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 PEGG+ +EE E + FV SLG R+LR++T Sbjct: 186 PEGGFTTEEVERALTHGFVA-RSLGSRVLRTET 217 >gi|255525324|ref|ZP_05392264.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7] gi|296188192|ref|ZP_06856584.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7] gi|255510996|gb|EET87296.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7] gi|296047318|gb|EFG86760.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7] Length = 251 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 10/228 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 +GD ++ VLR++ GD + + N E+L +I + K + +S+V+ Sbjct: 19 NGDDVKHIYKVLRLQVGDKVNINNCGGEEFLGEIEEINKKQVIVKFIKKLPLNNESNVEV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQ 137 Y+F + K+ ++D ++QK+ E+G+ + P++T + +DR + A +Q Sbjct: 79 YLFQGLPKSAKMDLIVQKTTELGVKEVTPIVTERVVVKNELGEFKKIDRWCRIALEACKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAILIG 195 +P I P + LL+ IV E + ++ I I + I+IG Sbjct: 139 SKRSLVPKINTPIEFQSLLEVLKQMDLIVVPYENAEGYGIKKVVNNIDKDSIKKIGIIIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG+ E E L L ++LGPRILR++TA M+L+ GD Sbjct: 199 PEGGFEESEIEALEKLG-AHIVTLGPRILRTETAGFVCMSLLMYELGD 245 >gi|78357040|ref|YP_388489.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219445|gb|ABB38794.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 238 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 12/218 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 G + H++ VLRM+ GD + +GK E L I + K S++ ++ S Sbjct: 19 GSEAHHMIKVLRMRAGDTCRILDGKGREGLFIIRGMDKNSVQLELAETVMHPEPHSRAYI 78 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT--ISAAEQCDILT 142 K+ R ++ +K+VE+ I +Q+ +M + ++ ++ A+QC Sbjct: 79 ALGWGKSVRRSWIFEKAVELEAAGIWLWQAARSQSKMPDMTKESWHSQLVAGAKQCVNPW 138 Query: 143 LPFIYP----PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + T L L + +D I++ E + +L + + +IGPEG Sbjct: 139 IPELKSVAAGVTGLVELAQGFDRKF-ILWEGE---AREALLSGETLGTSGDTLFVIGPEG 194 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 G+ +E L F SLG RILR +TAA+ + L Sbjct: 195 GFADDEVSLLKESGFAAA-SLGNRILRWETAALLCLGL 231 >gi|239637611|ref|ZP_04678583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus warneri L37603] gi|239596829|gb|EEQ79354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus warneri L37603] Length = 250 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 16/219 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86 H++ +V+R EG I+ + +I ++G ++E + Q+I Sbjct: 25 HHIKNVMRQCEGQQIVTTFNDQNVYTCEIIHIGDQ-EIEIELIEKQDIDTELPQHITICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++MIQK+ E+G R ++ + ++R + AAEQ Sbjct: 84 GLIKADKYEWMIQKATELGASEFIAVEMQRSIVKLNSTKASKKLERWQKIIKEAAEQSYR 143 Query: 141 LTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGP 196 LT+P I + + + + ++C +V +E H + V ++ GP Sbjct: 144 LTIPHISYLSNSKLICDIINQYDCVLVAYEEEAKHGEISHFKHMLKQFKPQDRVLLIFGP 203 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG EE L P + LGPRILR++TA + + Sbjct: 204 EGGLSDEEVSMLK--PHSQLVGLGPRILRAETAPLYTLG 240 >gi|294155674|ref|YP_003560058.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145] gi|291599900|gb|ADE19396.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 14/157 (8%) Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-------NMDRVRTYTISAAEQCD 139 S IK +R ++++QK++E+G I P+I+ +T + Y +R + SA+EQ Sbjct: 73 SIIKIDRYEWLLQKAIELGATRIVPIISEHTDGSLYKNNKFINKYERFNSIIKSASEQSF 132 Query: 140 ILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 L + P + E ++K N +I+ ++ N +++ +V I +GPEG Sbjct: 133 RNKLIKLDNPMSFNEAIIKYRYINNKIIAHEKIDLENNDYRNINS-----DVIIFVGPEG 187 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GY +E + L +SLG RILR+++A++ ++ Sbjct: 188 GYSKKEID-LSVKNDYKVVSLGRRILRAESASIYLLS 223 >gi|54020067|ref|YP_115694.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae 232] gi|6226420|sp|O50188|RSME_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|2654771|gb|AAC32528.1| unknown [Mycoplasma hyopneumoniae] gi|53987240|gb|AAV27441.1| putative 26.3 kda protein in cilium adhesion operon (orf5) [Mycoplasma hyopneumoniae 232] Length = 227 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +KT ++ IQK+VE+G+ I P V + + + + R + +A+Q + Sbjct: 77 LKTKSFEFAIQKAVEIGVNEIWPFYSKNVSQKLSGDLEKKLKRWEQICLHSAQQSFRNLI 136 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P + LL+ + F + E + ++ + N I+IGPEGG+ Sbjct: 137 PKINLPINYKDLLEQAKN-----FPVKLISFERAKNNINIPDNPQNTIIIIGPEGGFDDV 191 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231 E + L F + ++LG RILRS+TAA+ Sbjct: 192 EIQQAEKLGFQS-ITLGKRILRSETAAI 218 >gi|253681363|ref|ZP_04862160.1| conserved surface protein [Clostridium botulinum D str. 1873] gi|253561075|gb|EES90527.1| conserved surface protein [Clostridium botulinum D str. 1873] Length = 251 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 15/231 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 G+ ++ VLR+KEG+ + + N E+L I Y+ K+ + K+ + + Sbjct: 19 EGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKVEVKLLKELEVNNEPPIEV 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-------HYNMDRVRTYTISAA 135 Y+F + K+ ++D + QK E+G+ I P++T ++ +DR A Sbjct: 79 YLFQGLPKSTKMDLITQKCTELGVKDITPIVTSRVSSSINDIKRESKKLDRWNRIAFEAC 138 Query: 136 EQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIPNVAI 192 +Q +P + EF K D + +V + E G + L + + +AI Sbjct: 139 KQNKRTLIPVVNDIIDFHEFTDKLKDMDLIVVPYENAENYGIKQMTRGLK--SEVKKIAI 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +IGPEGG+ EE +L ++ ++LGPRILR++TA +AL+ GD Sbjct: 197 VIGPEGGFEEEEITSLKNMG-AHIVTLGPRILRTETAGFTCLALLMYELGD 246 >gi|78212815|ref|YP_381594.1| hypothetical protein Syncc9605_1285 [Synechococcus sp. CC9605] gi|78197274|gb|ABB35039.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 243 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 14/213 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ HYL VLR++ G+ + + +G G + + Q+ + + + Sbjct: 25 EEQHYLRRVLRLRCGEQVDVIDGC-GRLTRATLMEPQMLGLDSSVQNIEPSPKPQLGLAV 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 + ++ +D +++ + E+G+ I+P+ R + +R T A EQC+ L +P Sbjct: 84 ALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPERWATIIREAVEQCERLWIPQ 142 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGS-----ENSLEKLHAIAHIPNVAILIGPEGGY 200 ++ L + D + FA T S + L + + + ++IGPEGG+ Sbjct: 143 LHEVNGLSEWIGEQDG---LRFAGVTRESVAPSLDQCLRQQGNASQ--TIWVVIGPEGGW 197 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S E+ L + V P+ +G ILRS TAAVA+ Sbjct: 198 TSAEQ-NLFAEAGVRPVRMGATILRSSTAAVAS 229 >gi|71893552|ref|YP_278998.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae J] gi|71851679|gb|AAZ44287.1| putative 26.3 kDa protein in cilium adhesin operon [Mycoplasma hyopneumoniae J] Length = 227 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +KT ++ IQK+VE+G+ I P V + + + + R + +A+Q + Sbjct: 77 LKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLEKKLKRWEQICLHSAQQSFRNLI 136 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P + LL+ + F + E + ++ + N I+IGPEGG+ Sbjct: 137 PKINLPINYKDLLEQAKN-----FPVKLISFERAKNNINIPDNPQNTIIIIGPEGGFDDV 191 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231 E + L F + ++LG RILRS+TAA+ Sbjct: 192 EIQQAEKLGFQS-ITLGKRILRSETAAI 218 >gi|145588414|ref|YP_001155011.1| hypothetical protein Pnuc_0226 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046820|gb|ABP33447.1| protein of unknown function DUF558 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 253 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 87/165 (52%), Gaps = 21/165 (12%) Query: 92 NRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTI-------SAAEQCD 139 +++D++++K+VE G I P+ I + T+++ +++R + + +A EQCD Sbjct: 88 DKMDWIVEKAVETGAQIIAPLQCERSILKLTRSS--DLERAQKRLLHWEGIIQAACEQCD 145 Query: 140 ILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197 L + P T +L +++ + + S S+ I + P N+ ++IGPE Sbjct: 146 RTVLAKLEPIQTFSSYLQDGVKPKLKLLLSPDATQSLYSV----LIENEPQNIILMIGPE 201 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 GG+ +E++ + + +SLG R+LR++TA V A+ V ++ G Sbjct: 202 GGHSPDEEKQAETAGYQL-VSLGERVLRTETAGVVAITAVHSVWG 245 >gi|15672086|ref|NP_266260.1| hypothetical protein L105256 [Lactococcus lactis subsp. lactis Il1403] gi|12722949|gb|AAK04202.1|AE006248_10 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] Length = 250 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 19/224 (8%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGE-WLSK-ISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85 H++ V+R K GD I L+F DGE LS+ IS +S++ K+ +S Q V Sbjct: 27 HHIFTVMRAKSGDQIRLVFT--DGEIGLSEVISPSDQSVKLIKLLTESSELPVQITVAVG 84 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 F K ++LD++++KS E+G AI V + +++ + AAEQ Sbjct: 85 FP--KGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKLTKKQEKLEKVALGAAEQSR 142 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIG 195 +P + LL + Q++ A E E ++ K L ++ V I+ G Sbjct: 143 RQMIPELQLFEQFTDLLDKFSDFDQVLIAYEESAKMGEKTMFKQALTEMSLNQKVLIIFG 202 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 PEGG +E L + LGPRILR++TA + A++ + A Sbjct: 203 PEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSSISA 245 >gi|72080539|ref|YP_287597.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae 7448] gi|71913663|gb|AAZ53574.1| 26.3 kDa protein in cilium adhesin operon [Mycoplasma hyopneumoniae 7448] Length = 227 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +KT ++ IQK+VE+G+ I P V + + + + R + +A+Q + Sbjct: 77 LKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLEKKLKRWEQICLHSAQQSFRNLI 136 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P + LL+ + F + E + ++ + N I+IGPEGG+ Sbjct: 137 PKINLPINYKDLLEQAKN-----FPVKLISFERAKNNINIPDNPQNTIIIIGPEGGFDDV 191 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231 E + L F + ++LG RILRS+TAA+ Sbjct: 192 EIQQAEKLGFQS-ITLGKRILRSETAAI 218 >gi|220904439|ref|YP_002479751.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868738|gb|ACL49073.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 252 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 20/229 (8%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74 +C++ Q + +L+ VLR+ G+ + L +G+ + + GK +++ + + R Sbjct: 17 VCLEDQ------EARHLSQVLRLGPGNEVGLLDGRGRKGRFIVRKAGKKNVQLECISEER 70 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTI 132 ++ + K R + ++K+VE+G I ++Q + + + Sbjct: 71 LPLPEARAIIALAFSKAVRRGFFMEKAVELGAHGIWLWQGDHSQGKLSAAAEEACHGQLV 130 Query: 133 SAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + A+QC LP I L L DH + E +N A+A P Sbjct: 131 AGAKQCGNPWLPEIRGLANGVDELATLAAGADHR---ILPWEA--QDNVPMLTPALAGQP 185 Query: 189 NVAI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +++ +IGPEGG+ S E + L FV +SLG R+LR +TAA + L Sbjct: 186 GLSVYVIGPEGGFSSRELDMLKRSGFVA-VSLGARVLRCETAATLCLGL 233 >gi|307266432|ref|ZP_07547968.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918540|gb|EFN48778.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii Rt8.B1] Length = 194 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 11/146 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 G+ +H+L +VLR+K G+ I+ +G E+ ++I + K I F +E + S T+ + Sbjct: 19 EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESALE 76 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 +F + K+++++ +IQK E+G+ PV+TRYT N + + R R + A Sbjct: 77 ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH 161 +Q +P I P + E + D Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDK 162 >gi|167752853|ref|ZP_02424980.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216] gi|167659922|gb|EDS04052.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216] Length = 253 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 5/219 (2%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS-DV 82 S ++ + VLRM G+ + + +G+ + +I K R +V + K + Sbjct: 17 SEEESKHCIRVLRMACGEELHITDGRGNLYRCEIVDDNPKRCRVRVRDTNSEFGKLPYRL 76 Query: 83 QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K N R ++ ++K+ E+G+ I P+ T +++ +R +A +Q Sbjct: 77 TMAVAPTKNNDRFEWFLEKATEIGVAEIIPLATEHSERRTLKPERENKVITAAVKQSLKA 136 Query: 142 TLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P ++ T L ++K +D I D + H + +V +LIGPEG + Sbjct: 137 YHPRLHEITPLRQVIKQPFDGQKFIAHCDAPRSALGKAFLPHILHKGGDVLVLIGPEGDF 196 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EE + F ++LG + LR++TAAV A ALV A Sbjct: 197 SPEEIDLAVRGGFRE-ITLGSQRLRTETAAVMATALVAA 234 >gi|328474981|gb|EGF45775.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes 220] Length = 255 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 15/218 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDV 82 +G+ +H++ V+RMKE D + + ++ I+ + F V++ ++ Sbjct: 20 TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQK E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKRTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L + P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229 GPEGG EKE + L+ LGPRILR++TA Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235 >gi|270296112|ref|ZP_06202312.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273516|gb|EFA19378.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 232 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 27/229 (11%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75 I+T + ++ + VLR++ GD ++L +GK + ++IS + + +E ++ Sbjct: 9 IQTHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128 Query: 135 AEQCDILTLP----------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +Q LP FI P + + + + + D E++L Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEKPLLKDMVHPGEDAL------ 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +LIGPEG + EE F+ P+SLG LR++TAA+ A Sbjct: 183 -------VLIGPEGDFSEEEVRKATENDFI-PISLGKSRLRTETAALVA 223 >gi|326405687|gb|ADZ62758.1| ribosomal RNA small subunit methyltransferase E [Lactococcus lactis subsp. lactis CV56] Length = 250 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 19/224 (8%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGE-WLSK-ISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85 H++ V+R K GD I L+F DGE LS+ IS +S++ K+ +S Q V Sbjct: 27 HHIFTVMRAKSGDQIRLVFT--DGEIGLSEVISPSDQSVKLIKLLTESSELPVQITVAVG 84 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 F K ++LD++++KS E+G AI V + +++ + AAEQ Sbjct: 85 FP--KGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKLTKKQEKLEKVALGAAEQSR 142 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIG 195 +P + LL + Q++ A E E ++ K L ++ V I+ G Sbjct: 143 RQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTMFKQALTEMSLNQKVLIIFG 202 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 PEGG +E L + LGPRILR++TA + A++ + A Sbjct: 203 PEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSSISA 245 >gi|325297370|ref|YP_004257287.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides salanitronis DSM 18170] gi|324316923|gb|ADY34814.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides salanitronis DSM 18170] Length = 235 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 7/214 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFK-VEYQSRSQTKQSDVQY 84 ++ + VLR+ GD ++L +G + + I S GK + K VE + + + Sbjct: 18 EEAAHCLRVLRLTMGDEVVLTDGNGFFYKAVIDSIAGKRCQVKIVESIFQEPLWKGHLHV 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q Sbjct: 78 AMAPTKNIDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKIVVSAVKQSLKARK 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + + ++ D Q A C L A+ + +LIGPEG + E Sbjct: 138 PKVNEMIDFDKFVRQ-DFKGQKFIAH--CYEGEKLLLKDALDVRMDAVVLIGPEGDFSRE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E S F P+SLG LR++TAA+ A+ L+ Sbjct: 195 EVALAESCGF-RPISLGKSRLRTETAALVAVHLM 227 >gi|315924412|ref|ZP_07920634.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622291|gb|EFV02250.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 245 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCDILT 142 K ++D ++QK+ E+G+ ++ P ++ + D+V + AA+Q Sbjct: 86 KGQKMDEIVQKNTELGISSVVPFVSAFCVAKLEEPDKVARKCGRWQRIAFEAAKQSKRGK 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P ++ P + + + ++ A E L N+A+++G EGG+ Sbjct: 146 IPQVHEPVAFQRMCEIAADFDLVIIAYEHEMDRPLQTVLEGRTQYRNIAVIVGSEGGFSR 205 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EE E L + +SLG RILR++TA + +A + Sbjct: 206 EEVERLEAAG-AKSVSLGRRILRTETAGMVLLAQI 239 >gi|329766974|ref|ZP_08258502.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341] gi|328837699|gb|EGF87324.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341] Length = 249 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 15/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64 +++ F++ L +++ + S D +++ ++R K D + + + +++ I + V K Sbjct: 1 MQQYFLNEELNVESTYELSKDDSNHIVRIMRKKINDKVYVVFNNEIKYICNIIDNNVDKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + E S + + P+K ++++Y+IQK E+G+ I R + Sbjct: 61 LITPYEQVDGSNELPTKITVAIPPLKNDKIEYLIQKLTELGVSNIILFNSERNIAKIKKD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLL--KNWDHNCQIVFADETCGSE 175 ++R AAEQ +P I Y + E +L +N+D+ + + E+ + Sbjct: 121 KVDSKLNRWNKIIKEAAEQSKRNIIPDITYVDSLKELILFSENYDYKV-VAYEKESVNED 179 Query: 176 NSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 N K L++ + NV + G EGG +E L F + LG RILR++TA + Sbjct: 180 NVNFKRLLNSDLNNKNVIAVFGSEGGLSEQEIYNLLDDNF-EVIGLGKRILRAETAPLYF 238 Query: 234 MALV 237 ++ V Sbjct: 239 VSCV 242 >gi|326799017|ref|YP_004316836.1| ribosomal RNA small subunit methyltransferase E [Sphingobacterium sp. 21] gi|326549781|gb|ADZ78166.1| Ribosomal RNA small subunit methyltransferase E [Sphingobacterium sp. 21] Length = 236 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 7/210 (3%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85 D+ + A VLR+ GD I+L +G+ + +I+ K + ++ R+ K++ +I Sbjct: 21 DESKHCARVLRLGIGDPIVLIDGRGSLFRVEIADAHPKRTKVRILTIERNYGKRNHYLHI 80 Query: 86 -FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +RL++ ++K+ E+G+ I P+I +++ ++R+ +A +Q Sbjct: 81 AVAPTKNLDRLEWFLEKATEIGIDEITPIICEHSERKELKIERLTKVVTAAVKQSLSAYH 140 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P + + C + I + +LIGPEG + Sbjct: 141 PKINEPIDFRRFAEELPAKQHFI---AHCLEATKVTLTAEIKPHGSYCVLIGPEGDFSPS 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E S +SLG LR++TAA+ A Sbjct: 198 EVEFAIS-KGCQAISLGNTRLRTETAALYA 226 >gi|258546222|ref|ZP_05706456.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC 15826] gi|258518647|gb|EEV87506.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC 15826] Length = 227 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 23/224 (10%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLF PL + + +++ VLR++ G +++LFNG ++ +++ + + Sbjct: 16 RLFSSQPLRVGEVVALDASAHRHVSAVLRLRVGASLVLFNGDGFDYAAELVACDRRAS-Q 74 Query: 69 VEYQSRSQT-KQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 V +R +S + + + +K +D ++QK+VE+G I P+ T ++ + Sbjct: 75 VRILAREAVGNESPLNLVLFAALLKGEAMDRVVQKAVELGAKRIVPLRTARSEALPADER 134 Query: 126 RVRTYT------ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENS 177 R +++A QC TLP + +L++ + +F+ D S + Sbjct: 135 LSRKLAHWQGIVVASAMQCGRATLPQVEAVRDFADILED-APGLRWIFSPHDAPAASGQA 193 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 E V++LIGPEGG+ +E + ++ P SLGP Sbjct: 194 AEA---------VSVLIGPEGGFAPDEVAAAVNAGWL-PQSLGP 227 >gi|238019341|ref|ZP_04599767.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748] gi|237864040|gb|EEP65330.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748] Length = 243 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 16/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R M++ + + + G + GK+ Sbjct: 1 MKKIFIHTPL--DETIELPTDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITEEIDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 +EY + + + + S +K +L++++QK+ E+ + + V T + Y+ Sbjct: 59 QAKLIEYVESNVSSYRTI-LVQSLLKGEKLEWVLQKATELNIDTVYLVSTANSV-AKYDD 116 Query: 125 DRVRTYT-------ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--E 175 +++T + AA+QC LP + L +L+ ++V + G + Sbjct: 117 KKLQTKATRWEKIMLEAAQQCGRNQLPTLVVGEKLSQVLEIESDALKLVAYENEDGHTIK 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L ++++ I ++ I IGPEGGY E + +SLG ILR++TAA+ ++A Sbjct: 177 DVLSQVNSDESITDILICIGPEGGYQENEINAIIE-SGGKSVSLGNTILRAETAAIGSLA 235 Query: 236 LVQ 238 +++ Sbjct: 236 MIR 238 >gi|167618664|ref|ZP_02387295.1| hypothetical protein BthaB_20312 [Burkholderia thailandensis Bt4] Length = 227 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 51/240 (21%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 9 AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQL------ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R + D F P + +++D++I+K+VE+G+ A+ Sbjct: 62 ----VEIDKRGALARIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 114 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 P V+ + + R ++ EQC +P + P ++ +D Sbjct: 115 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPGVAP-------VRGFDAWL 167 Query: 164 QIVFADETCGSENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFV 214 + G L A A +P +V +LIGPEGG +E++ + F Sbjct: 168 DALPDAPAAGELRLLLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFA 227 >gi|195941291|ref|ZP_03086673.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a] Length = 243 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDINNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H I+ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGII-----------LSKNESFDNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|51598615|ref|YP_072803.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi] gi|51573186|gb|AAU07211.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 243 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRLKKGDKLNILL---KDKESRTSEIVKIGSNFIKFATNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138 S +K ++D ++++ VE+G+ I + ++ N +T S A +Q Sbjct: 81 FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNQIVPKINFYNNFFYLPYSFCTTKYYVAHQSGMI-----------LSKNESFDNFSKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP +LR+DTA + ++A +A+ GD+ Sbjct: 190 IIIGPEGCFSKPEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLAYFKALLGDY 241 >gi|265762508|ref|ZP_06091076.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255116|gb|EEZ26462.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 229 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 11/221 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---R 74 I+T + ++ + VLR+ GD I L +GK + ++IS V R V + + Sbjct: 9 IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS-VAAHKRCLVNIKETIYQ 67 Query: 75 SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 + +P K +R ++ +K+ E+G + + R+++ +R+ +S Sbjct: 68 EPLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127 Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A +Q LP + T F+ K++ I E E L K + + + Sbjct: 128 AIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYE---GEKPLLK-DVLTKGEDALV 183 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 LIGPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 184 LIGPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVA 223 >gi|317153253|ref|YP_004121301.1| hypothetical protein Daes_1541 [Desulfovibrio aespoeensis Aspo-2] gi|316943504|gb|ADU62555.1| protein of unknown function DUF558 [Desulfovibrio aespoeensis Aspo-2] Length = 246 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 98/241 (40%), Gaps = 35/241 (14%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73 +P + + SG + H++ VLR + LF+G L K+ ++ Sbjct: 14 WPSAVGETVRFSGAEAHHMLAVLRTAPDQIVRLFDGLGRVGLFKVQKTDRNTALLEAVSL 73 Query: 74 RSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEM-GMG-AIRPVITRYTQNTHYNMDRVRTY 130 S Q + V K+ R DY+ +K VE+ G+G A Q + R Sbjct: 74 ESHPAQDTGVTLAIGWGKSKRRDYLFEKLVELQGLGVAFWSAARSQGQMPDTPKESWRDK 133 Query: 131 TISAAEQCDILTLPFIYP-PTTLEFLL---KNWDHNCQIVF-----------ADETCGSE 175 + AA+QC LP I P L LL + +D C + + AD +CG+ Sbjct: 134 CVQAAKQCGNPLLPTITVLPAGLGGLLDFARGFDR-CYVAWESDEADRPLTPADLSCGTS 192 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 I+IGPEGG +E L FV P++LG ILR +TAA ++ Sbjct: 193 ---------------LIVIGPEGGLEHDEALALLEGGFV-PVTLGQSILRWETAATYCLS 236 Query: 236 L 236 L Sbjct: 237 L 237 >gi|60680491|ref|YP_210635.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis NCTC 9343] gi|253563645|ref|ZP_04841102.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60491925|emb|CAH06684.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251947421|gb|EES87703.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162028|emb|CBW21572.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 11/221 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---R 74 I+T + ++ + VLR+ GD I L +GK + ++IS V R V + + Sbjct: 9 IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS-VATHKRCLVNIKETIYQ 67 Query: 75 SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 + +P K +R ++ +K+ E+G + + R+++ +R+ +S Sbjct: 68 EPLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127 Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A +Q LP + T F+ K++ I E E L K + + + Sbjct: 128 AIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYE---GEKPLLK-DVLTKGEDALV 183 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 LIGPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 184 LIGPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVA 223 >gi|224500510|ref|ZP_03668859.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes Finland 1988] Length = 255 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 13/217 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ + H ++ A E E L ++ P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG SE++ L LGPRILR++TA Sbjct: 200 IFGPEGGI-SEKELLLLEEANAKLAGLGPRILRTETA 235 >gi|219685489|ref|ZP_03540307.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219673045|gb|EED30066.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 243 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRFKKGDKLNILL---KDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138 S +K ++D ++++ VE+G+ I + ++ N +T S A +Q Sbjct: 81 FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H I+ L K + + + Sbjct: 141 GNQIVPKINFYNNFFYLPYSFCTTKYYVAHQSGIL-----------LSKNESFDNFSKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP +LR+DTA + ++A +A+ GD+ Sbjct: 190 IIIGPEGCFSKPEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLAYFKALLGDY 241 >gi|153854414|ref|ZP_01995692.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814] gi|149752940|gb|EDM62871.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814] Length = 245 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 109/222 (49%), Gaps = 10/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83 G +++ +VLRMK G+ + + +G+ ++L + SY K+ + + +++ + Sbjct: 19 EGGDVNHMKNVLRMKTGEELTVNDGEGSQYLCAVESYEADMAVLKILGKKQDESELASKI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 Y+F + K ++++ ++QKSVE+G + PV T+ + ++R + +SAA+ Sbjct: 79 YLFQGLPKQDKMELIVQKSVELGAYQVIPVATKRAVVKLDAKKAKKKVERWQQIAVSAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + T LK + + ++ + G E + + + I +V I I Sbjct: 139 QAGRGIIPEVGEVCTYAQALKQAEELDVVLIPYELEKGMEETKQIIAGIRPGQSVGIFI- 197 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G EE+ L P++LG RILR++TA + ++++ Sbjct: 198 GPEGGFEEEEVALAMKTGANPVTLGKRILRTETAGLTMLSVL 239 >gi|325568307|ref|ZP_08144674.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325158076|gb|EGC70229.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 251 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 25/241 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P K SG+ +H++ V+RM G + L ++KI + Sbjct: 1 MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGTKVGLVFEDHLAIIAKIKEADEETV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + E + Q K+ +Q + K ++LD ++QK E+G A I Q + Sbjct: 61 YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAF---IGFPAQTSVVKW 117 Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADET 171 D+ + AAEQ P I T L+ W ++ +V +E+ Sbjct: 118 DQKKLQKKQQRLQKIAQEAAEQSQRQIAPAI---TLLDNAKAFWQSLSQYDAVLVAYEES 174 Query: 172 CGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L I +P V + GPEGG E E LGPRILR++T Sbjct: 175 AKQGEAAMLLQVITELPVGSKVLAIFGPEGGLAPSEIEGAQE-NNAKLCGLGPRILRTET 233 Query: 229 A 229 A Sbjct: 234 A 234 >gi|254302941|ref|ZP_04970299.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323133|gb|EDK88383.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 235 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 12/214 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQSDVQYIFS 87 +++ +V R +GD I +G + E+L +I + K I K+ ++ + + +V S Sbjct: 23 NHIKNVFRKVKGDKIRAVDGTN-EYLCEIEKIEDKEIELKILEKTEDKFSLDIEVDAGIS 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R DR + A +QC + I Sbjct: 82 ILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWEIISKEALKQCQGVVPTVI 141 Query: 147 YPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL--IGPEGGYHSE 203 ++ L K++D ++ E ++++ I IL IG EGG+ E Sbjct: 142 DEIKKIDKLNFKDYD----LILVPYENEKEIFIKEIFRDLKIKPTKILYIIGAEGGFEKE 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L +SLG RILR++TAA+ ++ Sbjct: 198 EINYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230 >gi|225871292|ref|YP_002747239.1| hypothetical protein SEQ_2023 [Streptococcus equi subsp. equi 4047] gi|225700696|emb|CAW95299.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 19/225 (8%) Query: 27 DQYHYLAHVLRMKEGDN-ILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQY 84 D ++ V+R+ + + +L+F+ DG + +++ V S ++VE + + + V+ Sbjct: 20 DTIKHMFQVMRLTDKEELVLVFD--DG--IKRLARVSDSSAYEVELIKELEENLEMPVEV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAE 136 + K ++LD + QK+ E+G AI V+ ++ +++ + AAE Sbjct: 76 TIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKKLAKKQEKLAKIALGAAE 135 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVAI 192 Q +P I LLK C I + + E S +L ++ V Sbjct: 136 QSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERSTLARELAGLSPGQKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG S+E + +T + LGPRI+R++TA + A++ V Sbjct: 196 IFGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALSAV 239 >gi|225848975|ref|YP_002729139.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644488|gb|ACN99538.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 222 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 107/223 (47%), Gaps = 14/223 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83 + D+YH+ V R+KEGD + + + + +L +I + K+ + ++ + K D + Sbjct: 4 TDDEYHHAVKVRRLKEGDKVEVNDLQGNIYLGEILKIEKN-KALIKPIQKQDIKIPDYKI 62 Query: 84 --YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQ 137 Y P + +++D +I+ ++G+ PV+++ + + + + +++ +Q Sbjct: 63 TLYQCMPNQLSKIDDIIEPISQLGVDRFVPVLSKNSAVKQSDVEKKIQKWEKIALNSIKQ 122 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L I P L + N + ++VF ++ E + L N +I+IG E Sbjct: 123 CRRLYPVSIDKPVKLSNI--NSYDDLKVVFYEKE--YERKTKDLIG-KTFQNCSIVIGNE 177 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GG+ +E L F+ PLSLG IL+ +TA + + ++ I Sbjct: 178 GGFKEDEINLLVDKGFL-PLSLGNYILKMETAIIVGICQIKII 219 >gi|50365119|ref|YP_053544.1| hypothetical protein Mfl303 [Mesoplasma florum L1] gi|50363675|gb|AAT75660.1| unknown protein [Mesoplasma florum L1] Length = 238 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 15/209 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--S 87 H++ +V+++K D I+ + + +KI + VE ++ +T S+V+ + Sbjct: 23 HHIKNVVKLK-NDEIIECVYEKEVYQTKIIDLTIENNVIVEIINKVETTISNVKKVLIAG 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 ++ + DY++QKS E+G+ I PVI + + + R + +AA+Q Sbjct: 82 VLREQKWDYLLQKSTELGVDEIIPVIFKRNVVKIDEKKIDQKLQRWQAICDTAAKQAKRT 141 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE-KLHAIAHIPNVAILIGPEGGY 200 T+P + T LKN + +V ++ E ++E K + +++ +IG EGG Sbjct: 142 TIPVVNNLITNLKDLKNNLCDLNLVAWEK----EKNIELKTYLTQDFNSISFIIGCEGGI 197 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E + LH + F +SLG ILR++TA Sbjct: 198 EVSEIKILHEIGF-KNVSLGTNILRAETA 225 >gi|312890379|ref|ZP_07749916.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM 18603] gi|311297149|gb|EFQ74281.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM 18603] Length = 234 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 7/212 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDV 82 S ++ + VLR++ GD++ L +G G + ++I K + K+ Q+ + + Sbjct: 18 SEEESKHCIRVLRLQMGDHVQLIDGHGGLYEAEIVDAHPKKVALKLLSLQNEFGRRNHYL 77 Query: 83 QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K RL++ ++K+ E+G+ I +I + ++ +R+ SA +Q Sbjct: 78 HIAVAPTKNLERLEWFLEKATEIGIDEISLMICQRSERKEAKAERLNKIITSAIKQSLKA 137 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 P + T + L+ N + Q A G + L L + ILIGPEG + Sbjct: 138 YHPLLNEVTPFQKLI-NQPFDGQKFIAHCEPGDKAELSSLLKLQGC--YLILIGPEGDFS 194 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E E F P++LG LR++TAA+ A Sbjct: 195 PKEIEDALQNGF-EPITLGNSRLRTETAALEA 225 >gi|260435986|ref|ZP_05789956.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109] gi|260413860|gb|EEX07156.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109] Length = 237 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 9/216 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ HYL VLR++ G+ + L +G G + K + Q Q + Sbjct: 19 EEQHYLRRVLRLRCGERVDLIDGC-GRLTTATLVEPKLLALDKPAQLIESLAQPHLGLAV 77 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 + ++ +D +++ + E+G+ I+P+ R + +R T A EQC+ L P Sbjct: 78 ALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPERWATIIREAVEQCERLWTPQ 136 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEGGYHSE 203 + L +++ + ET S +L++ H + +++GPEGG+ E Sbjct: 137 LLDLKDLSQWMEDERGQRLVGVTRET--STPALDQWLRHQADPVQLTWLMVGPEGGWTEE 194 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA-AMALVQ 238 E + + P+ +G ILRS TAAVA A+ LV+ Sbjct: 195 ELKQFTE-AQIQPVQMGSTILRSSTAAVAGAVELVR 229 >gi|239617245|ref|YP_002940567.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1] gi|239506076|gb|ACR79563.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1] Length = 231 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 28/226 (12%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDG------EWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 + H++ V+R+K GD ++ +GK + LSK VG+ + KV + Sbjct: 21 EAHHM-KVVRVKPGDELVATDGKGTLYEFVLQELSKNYSVGRMLSKKVFHHD-----DRT 74 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIR-----PVITRYTQNTHYNMDRVRTYTISAAE 136 V + +K RL +++KS E+G I + R Q +++ R AA+ Sbjct: 75 VIVSVASMKWLRLRLILEKSTELGADRIEIFNCERTVARVDQR---KVEKFRRIVKEAAK 131 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q PF+ P + L ++ + +F D S ++L++ +++ V I++GP Sbjct: 132 QS---VNPFL-PEVVIHEKLPRFNSDDLNIFLDFKKESISTLQEKIRGSNV--VRIIVGP 185 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 EGG+ EE + +SLG RILR++TA +A+++ V G Sbjct: 186 EGGFTKEEIREMQQDSI--SVSLGSRILRTETAVIASLSFVNFSIG 229 >gi|53712317|ref|YP_098309.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis YCH46] gi|52215182|dbj|BAD47775.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 229 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 11/221 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---R 74 I+T + ++ + VLR+ GD I L +GK + ++IS V R V + + Sbjct: 9 IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS-VATHKRCLVNIKETIYQ 67 Query: 75 SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 + +P K +R ++ +K+ E+G + + R+++ +R+ +S Sbjct: 68 EPLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127 Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A +Q LP + T F+ K++ I E E L K + + + Sbjct: 128 AIKQSLKARLPRLNEMTDFYTFIEKDFKGQKFIAHCYE---GEKPLLK-DVLTKGEDALV 183 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 LIGPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 184 LIGPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVA 223 >gi|306832638|ref|ZP_07465777.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304425246|gb|EFM28373.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 247 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQYI 85 D ++ +V+R+ E D ++L + L+K+ + RF++ + S + ++V + Sbjct: 20 DTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEH-RFEIIEELDSNVELPAEVTIV 78 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139 K ++L+++ QK E+GM + V+ + D++ T+ AAEQ Sbjct: 79 AGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKLAKKADKLAKITLGAAEQSK 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195 +P + E L + +I A E E +L + + + G Sbjct: 139 RNVIPEVTLFEKKEAFLAELEQFDRIFIAYEESAKEGETAVLARELSQMKAGEKILFIFG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG EE ET L + LGPRI+R++TA + A+A V Sbjct: 199 PEGGISPEEIETFE-LKGGLKIGLGPRIMRAETAPLYALASV 239 >gi|302343725|ref|YP_003808254.1| hypothetical protein Deba_2298 [Desulfarculus baarsii DSM 2075] gi|301640338|gb|ADK85660.1| protein of unknown function DUF558 [Desulfarculus baarsii DSM 2075] Length = 251 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 12/239 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 +R V+ + + + + VLR+ GD + L +G ++++ +GK Sbjct: 4 RRFLVEPAALDGPEARLDASEAAHARKVLRLNVGDEVWLVDGHGRRAKARLTSLGKGGAS 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHY 122 ++E R + + K +D++ + E+ + +RP + + + Sbjct: 64 CRIEAVERLTPLRPRLVICPGLAKGPAMDFLAARLTELAVDEVRPFLAARGEVRLRDEDQ 123 Query: 123 NMDRVRTYTISAAEQCDILTLP--FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R R A +QC LP F L I++ E ++ + Sbjct: 124 RLERWRRLAGQALKQCGAPLLPEFFAPLDLEALLALAPARAARLILYEGE---DGRAMAQ 180 Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + A A P V LIGPEGG+ + E + ++ F TP LG ILR++TA +A A+ + Sbjct: 181 VLAEAEGPAEVWALIGPEGGFTAAEVDRAAAVGF-TPCGLGGVILRAETACLAVAAVAR 238 >gi|162455373|ref|YP_001617740.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56'] gi|161165955|emb|CAN97260.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56'] Length = 252 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 23/230 (10%) Query: 27 DQYHYLAHVLRMKEGDNILLFN---GKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDV 82 + Y+ V R++EGD ++F+ G + E L I G R + + + V Sbjct: 24 EAASYVVRVHRLREGDRFVVFDPELGVEAEATLESIGRRGAEARIDAPRPAALRPGRR-V 82 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDI 140 +I + K +++D +++ + E+G I P I+ + + R R I AA QC Sbjct: 83 TWIQAVGKGDKMDAVVRDATELGATRIIPAISARSVARPAEEKSQRWRRIAIEAARQCGR 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHN----------CQIVFADETCGSENSLEKLHAIAHIPNV 190 P + P +L L C +A+ G+ +L A++ Sbjct: 143 GDAPRVEAPMSLAAALAEAGAAPSTEGGALGMCLDPYAETPLGA-----RLAALSPGMEA 197 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A +GPEGG+ EE +L F + LG LR++T AA+ + A+ Sbjct: 198 AFAVGPEGGFTPEELGMCAALGFER-VRLGALTLRTETVCAAALGALIAV 246 >gi|167580555|ref|ZP_02373429.1| hypothetical protein BthaT_20538 [Burkholderia thailandensis TXDOH] Length = 226 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 51/239 (21%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ Sbjct: 9 AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQL------ 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R + D F P + +++D++I+K+VE+G+ A+ Sbjct: 62 ----VEIDKRGALARIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 114 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 P V+ + + R ++ EQC +P + P ++ +D Sbjct: 115 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPDVAP-------VRGFDAWL 167 Query: 164 QIVFADETCGSENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPF 213 + G L A A +P +V +LIGPEGG +E++ + F Sbjct: 168 DALPDAPAAGELRLLLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGF 226 >gi|317495255|ref|ZP_07953625.1| RNA methyltransferase [Gemella moribillum M424] gi|316914677|gb|EFV36153.1| RNA methyltransferase [Gemella moribillum M424] Length = 249 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 29/243 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSI 65 +++ FV+ I + S D +++ ++R K D I ++FN + I Y+ I Sbjct: 1 MQQYFVNDKFDINSTYNLSKDDSNHIVRIMRKKINDKIYVVFNDE-------IKYICSII 53 Query: 66 RFKVE------YQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAI------RP 111 +E Y+ + + ++ + P+K ++ +Y+IQK E+G+ +I R Sbjct: 54 NDNIESVIVKPYEEVRGSNELPIKITIAIPPLKNDKTEYLIQKLTELGVSSIVLFNSERN 113 Query: 112 VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFA 168 + ++R + AAEQ +P I E L+ K+ D+ + + Sbjct: 114 IAKIKKDKVESKLNRWQKIIKEAAEQSKRNLIPDITYIDCFEKLIEYSKSLDYK-MVAYE 172 Query: 169 DETCGSEN-SLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 E+ +N +L+K L+ +V + G EGG +E TL S F +SLG RILR+ Sbjct: 173 KESINEDNYNLKKLLNGPLENKSVIAVFGSEGGLSEKEINTLTSSEF-DVISLGKRILRA 231 Query: 227 DTA 229 +TA Sbjct: 232 ETA 234 >gi|296110360|ref|YP_003620741.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154] gi|295831891|gb|ADG39772.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154] Length = 247 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 25/175 (14%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134 +V I SP+K +R D+ +QK+ E+G+ I R V Q + + R++ +A Sbjct: 78 EVTMIVSPLKNDRSDWFVQKATELGVNRIIFTNMSRTVADWQKQQSKKGL-RLQKIAEAA 136 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDH------NCQIVFADETCGSENSLEKLHAIAHIP 188 AEQ L +P + +FL W+ IV +E+ + I +P Sbjct: 137 AEQSHRLMVPMV------DFL--PWEEVVRLPKKAGIVAWEESARQGEVATLVKVINQLP 188 Query: 189 NVA---ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A +L+GPEGG E L + LGPRILR++TA + ++ + + Sbjct: 189 KEAHVHVLLGPEGGLTLSEINLLIENGY-QAAGLGPRILRAETAPLYVLSAISVL 242 >gi|328946995|ref|YP_004364332.1| ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] gi|328447319|gb|AEB13035.1| Ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] Length = 269 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 41/270 (15%) Query: 7 LKRLFVDFPL----CIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKIS 59 +++ V+ PL CI QGK +YHYL VLR+K GD I LL ++KI Sbjct: 1 MRQFIVETPLDSDGCIGIQGK----KYHYLNSVLRVKCGDMIYARLLDGSLQQMTVAKIV 56 Query: 60 YVGKSIRFKVEYQ-----SRSQT-----KQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGA 108 K I + + S SQ K Y+F K ++D +I+++ E G+ Sbjct: 57 SCEKKIILQAAGKLNCNDSISQAAPVLEKPKAEIYLFQFEAKPPKMDLIIRQATECGVCG 116 Query: 109 IRPVITRYTQNTHYNMDRVRTYT---------ISAAEQCDILTLPFIYPPTTLEFLLKNW 159 I PV + Q + R ++ + A +Q ++ ++E W Sbjct: 117 IIPVEGEFCQKGNIESARKKSESGDERWQRIVTEARQQSGSPVETKVFYSVSVEEACGFW 176 Query: 160 -----DHNCQIVFADETCGSE---NSLEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHS 210 +H +V + + G++ N+L+ I +A+ +G EGG +E + Sbjct: 177 SSLQAEHKAALVLYERSDGTKSIYNALKNADVIKKENAKIAVAVGAEGGISVQEISIMKE 236 Query: 211 LPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 F+ P+ ILR +TA++ +A +Q + Sbjct: 237 SGFI-PVHFDTNILRCETASLYGIAALQTV 265 >gi|320104496|ref|YP_004180087.1| hypothetical protein Isop_2973 [Isosphaera pallida ATCC 43644] gi|319751778|gb|ADV63538.1| protein of unknown function DUF558 [Isosphaera pallida ATCC 43644] Length = 270 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 21/214 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSR--SQTKQSD 81 ++ +L+ VLR + GD + +F+ ++++ +G +S VE +T + Sbjct: 36 EEGRHLSIVLRHRRGDRVEVFDSLGRVVIARVESLGSKRESTVLVVEQVGGILDRTPRRR 95 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQ 137 V+ +P K RL+++I+KS E+G+ + + R + +D++R I A+Q Sbjct: 96 VRLAVAPPKGERLEWLIEKSAELGVEHVTLIHCRRGVASLEGGSPKLDKLRRKVIEVAKQ 155 Query: 138 C---DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 C ++T+ + T L W C D+ E A++ +A LI Sbjct: 156 CRRNRLMTIDALDFRTYLAQETAAWRWLCH---PDDAQPPEP-----EALSDPQPLAALI 207 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 GPEGG+ S+E + + P LG ILR +T Sbjct: 208 GPEGGFESDELAEARAWGW-RPTRLGSPILRVET 240 >gi|257899573|ref|ZP_05679226.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257837485|gb|EEV62559.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 254 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 16/231 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83 G+ YH++ V+RM+ D + L +++I+ + + + E + K+ S + Sbjct: 20 GETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAVYLKEIKKEENQKELPSSIT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 K +LD++IQKS E+G A V+ + R+ AAEQ Sbjct: 80 IASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAIL-- 193 +P + T L + D ++ A E + + I P IL Sbjct: 140 SHRQIVPSVELLETKRDLFERLDDYDMVLVAYEESAKQGEKSNVAKILSETKPGSRILAV 199 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG EE + + LGPRILR++T A + L+ A W Sbjct: 200 FGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246 >gi|16803510|ref|NP_464995.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes EGD-e] gi|47095422|ref|ZP_00233032.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 1/2a F6854] gi|224501590|ref|ZP_03669897.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes FSL R2-561] gi|254829771|ref|ZP_05234426.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes 10403S] gi|254898364|ref|ZP_05258288.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes J0161] gi|254912144|ref|ZP_05262156.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936472|ref|ZP_05268169.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|5689042|dbj|BAA82792.1| orf29 [Listeria monocytogenes] gi|16410899|emb|CAC99548.1| lmo1470 [Listeria monocytogenes EGD-e] gi|47016243|gb|EAL07166.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 1/2a F6854] gi|258609065|gb|EEW21673.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590116|gb|EFF98450.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 255 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 13/217 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82 +G+ +H++A V+RMKE D + + ++ I+ + + + V++ ++ Sbjct: 20 TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K ++L+ +IQKS E+G A R V+ + ++R++ AAE Sbjct: 80 TIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193 Q +P ++ + + L+ H ++ A E E L ++ P ++L Sbjct: 140 QSHRTIIPEVHYAASFKELMFGHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG SE++ L LGPRILR++TA Sbjct: 200 IFGPEGGI-SEKELLLLEEANAKLAGLGPRILRTETA 235 >gi|325693858|gb|EGD35777.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK150] Length = 250 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84 D ++ V+R+KEGD + L+F+ DG + +++ V + +E + + + VQ Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLARVLDPSQQSLEILEELADNTELPVQV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 I + K ++L+++ QK E+G AI ++ + +++ AAE Sbjct: 76 IIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135 Query: 137 QCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAI 192 Q +P I + +FL D + IV +E+ S + L +A V Sbjct: 136 QSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKEGESTVLVRALSGLAAGAKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG +E V+ LGPRILR++TA + A+ V + Sbjct: 196 IFGPEGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|317504916|ref|ZP_07962867.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606] gi|315663966|gb|EFV03682.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606] Length = 240 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 17/215 (7%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQYIFSPIK 90 VLR++ GDN++L +GK G + I + + E Q + +T S + +P K Sbjct: 28 RVLRLQSGDNMVLMDGK-GTFYHAIVTLASHKKCLYEIQETLPQEKTWSSQIHLAIAPTK 86 Query: 91 T-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 +R++++ +K E+G + + +++ DR+ +SAA+Q +P + Sbjct: 87 NIDRIEWLAEKVTEIGFDELSFLHCTFSERKMLRQDRIEKIVVSAAKQSRKAWMPKVNAL 146 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSE 203 + + + + + C +E +EK I N + +L+GPEG + + Sbjct: 147 ESFKEFITTPREGRKFI---AHCYTE--IEKKDFFDAITNDDLATPITVLVGPEGDFSID 201 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E + + ++LG LR++TA + A+ + Q Sbjct: 202 EVRLAMEQGYES-ITLGKSRLRTETAGLMAVTMAQ 235 >gi|183220665|ref|YP_001838661.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910767|ref|YP_001962322.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775443|gb|ABZ93744.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779087|gb|ABZ97385.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 24/229 (10%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNIL-LFNGKDGEWLSKISYVGKSIRFKVEYQS 73 P K + + ++ ++L LR++ +NI+ + +G+ G + + K + F+ E Sbjct: 12 PFFKKESIQLTKEELNHL-RALRLQSENNIIQIRDGEGGLYNYLYTPNSKDLVFQNEEFV 70 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 +T + + K NRLD+ +QK E+G+ + ++ R++ +N++R Sbjct: 71 PRKTNRKKIAIALP--KGNRLDFFLQKVTEIGLDEVIFLVFRHSIRKEFNLERAEKIVKE 128 Query: 134 AA---EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIP 188 AA +Q +IL L I P K+W H +V ++ L IP Sbjct: 129 AAAQSKQTEILNLS-IEPA-------KDWMETHKESLVVFHPFGKDIFQIQSL--AGKIP 178 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGGYH++E+E + + L+L +LR++T + A + + Sbjct: 179 ----VIGPEGGYHADEEEWMEKNQ-IPKLTLPGGVLRTETCGIVAASFL 222 >gi|257877049|ref|ZP_05656702.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257811215|gb|EEV40035.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 251 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 25/241 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P K SG+ +H++ V+RM G + L ++KI + Sbjct: 1 MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + E + Q K+ +Q + K ++LD ++QK E+G A I Q + Sbjct: 61 YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAF---IGFPAQTSVVKW 117 Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADET 171 D+ + AAEQ P I T L+ W ++ +V +E+ Sbjct: 118 DQKKLQKKQQRLQKIAQEAAEQSQRQIAPAI---TLLDNAKAFWQSLSQYDAVLVAYEES 174 Query: 172 CGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L I +P V + GPEGG E E LGPRILR++T Sbjct: 175 AKQGEAAMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQ-NNAKLCGLGPRILRTET 233 Query: 229 A 229 A Sbjct: 234 A 234 >gi|194467763|ref|ZP_03073749.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23] gi|194452616|gb|EDX41514.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23] Length = 246 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 12/219 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87 H+L V+R + G ++ L +L+ +S + K+ + + S+ S Sbjct: 22 HHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTATLKINQKLDADSELPVSVTLACGI 81 Query: 88 PIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 P + + ++QK+ E+G A R + ++R++ SAAEQ Sbjct: 82 PKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRN 141 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198 +P + L+ LL N+ +IV +E+ G ++L ++ +A+ ++ + GPEG Sbjct: 142 KIPQVEYSANLDQLLANYPATERIVAWEESAKQGETSALAQQFNALKPGDSILAVFGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G E ++ V LGPRILR++TA + MA + Sbjct: 202 GLSENEIAKMNEAGVVAA-GLGPRILRTETAPLYFMAAI 239 >gi|327468704|gb|EGF14183.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK330] Length = 250 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 11/225 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KEGD + L + L+++ G+ +E + + V Sbjct: 20 DTAKHMFSVMRLKEGDQVTLIFDDGMKRLARVLDPGQQSLEILEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK E+G AI ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196 +P I + ++FL D + IV +E+ S + A++ + V + GP Sbjct: 140 NLIPEIRFFDKKVDFLAALTDFDRIIVAYEESAKEGESAALVRALSGLEAGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 EGG +E + ++ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPDEIDAFGQAGAISA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|281423446|ref|ZP_06254359.1| RNA methyltransferase, RsmE family [Prevotella oris F0302] gi|281402782|gb|EFB33613.1| RNA methyltransferase, RsmE family [Prevotella oris F0302] Length = 240 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 11/211 (5%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 VLR++ GD++ L +G+ + +++S K + E + +T + + +P K Sbjct: 29 VLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYTIKENLPQQKTWRGHIHLAIAPTKNI 88 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 +R++++ +K+ E+G + + +++ DR+ +SAA+Q P++ T Sbjct: 89 DRMEWLAEKATEIGFDELSFLHCAFSERKVLRADRIEKIVVSAAKQS---RKPWMPQVNT 145 Query: 152 LE----FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 LE F+ + + I E ++ ++ + +L+GPEG + +E Sbjct: 146 LESFKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDNQKNEQITVLVGPEGDFSIDEVRL 205 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + + +SLG LR++TA + A+ + Q Sbjct: 206 AMAQGYES-ISLGESRLRTETAGLMAVTMAQ 235 >gi|281490567|ref|YP_003352547.1| RNA methyltransferase family protein [Lactococcus lactis subsp. lactis KF147] gi|281374385|gb|ADA63918.1| RNA methyltransferase family protein [Lactococcus lactis subsp. lactis KF147] Length = 250 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 19/224 (8%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGE-WLSK-ISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85 H++ V+R K GD I L+F DGE LS+ IS +S++ K+ +S Q V Sbjct: 27 HHIFTVMRAKIGDQIRLVFT--DGEIGLSEVISPSDQSVKLIKLLTESSELPVQITVAVG 84 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 F K ++LD++++KS E+G AI V + +++ + AAEQ Sbjct: 85 FP--KGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKLTKKQEKLEKVALGAAEQSR 142 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIG 195 +P + LL + Q++ A E E ++ K L ++ V I+ G Sbjct: 143 RQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTMFKQALTEMSLNQKVLIIFG 202 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 PEGG +E L + LGPRILR++TA + A++ + A Sbjct: 203 PEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSSISA 245 >gi|81428349|ref|YP_395349.1| hypothetical protein LSA0735 [Lactobacillus sakei subsp. sakei 23K] gi|78609991|emb|CAI55039.1| Hypothetical protein LCA_0735 [Lactobacillus sakei subsp. sakei 23K] Length = 251 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 29/243 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 ++R F++ + + + +G+ H++ V+RM+ GD I + ++ +++++ S Sbjct: 1 MQRYFIEETVTVGQSLQLTGETAHHMLKVMRMQVGDQIEIVTPEELAFITQLQSADATQK 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKT---------NRLDYMIQKSVEMGMGAIRPV---- 112 + V +S +T DV+ PI+T ++ D+++QK + +GA R + Sbjct: 61 QATVTVESAVET---DVEL---PIETTIVCGLSKGDKTDWIVQKGTQ--LGAHRFIFCNS 112 Query: 113 ---ITRYTQNTHY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168 + R+ + R++ AAEQ +P I +L + + + + Sbjct: 113 QFSVARWDAKKQVKKLARLQKIAQEAAEQAHRTHVPVIEWRASLTAIAEESADIKLVAYE 172 Query: 169 DETCGSENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + E+ ++ L + ++ + GPEGG +E E L + F+ LGPRILR+ Sbjct: 173 ESAKAGEHGQLVQSLQSAQPGQSLICVFGPEGGIAPKEIEALQAAGFLLA-GLGPRILRA 231 Query: 227 DTA 229 +TA Sbjct: 232 ETA 234 >gi|166365923|ref|YP_001658196.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843] gi|166088296|dbj|BAG03004.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843] Length = 157 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 I N D +++ + E+G+ I P++T + +DR R A EQ + +P I Sbjct: 4 IPKNGFDDIVRAATELGVYRIIPLLTERGLVNPSPQKIDRWRKIAREAVEQSERQIIPII 63 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P +L + T + + L L + + + IGPEGG+ E E Sbjct: 64 EEPQPFLAILNRGVSPGTTCYIGVTRRTVDPL--LSQLQTSTEITMAIGPEGGWTEAEIE 121 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + F+ P+SLG RILR+ TA + A+A++ A Sbjct: 122 QAIAADFL-PVSLGKRILRTITAPLVALAIINA 153 >gi|225016957|ref|ZP_03706149.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum DSM 5476] gi|224950271|gb|EEG31480.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum DSM 5476] Length = 212 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 17/211 (8%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF---SPIKTNRL 94 MK G+ I+L +GK + +IS + + VE + R + K +I + K ++ Sbjct: 1 MKAGEKIVLCDGKGVDCHGEISQITDN-EVIVEIRERVENKTEPSVHIRLYQAMPKGDKF 59 Query: 95 DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 + ++QKSVE+G+ I PV+T ++ ++R AA+Q +P + Sbjct: 60 EQIVQKSVELGVFEIIPVLTARCISRPDAKSMRKKIERYNKIAYEAAKQSGRGRIPLVRE 119 Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAILIGPEGGYHSEEKE 206 + LK+ CG +++ A+ A ++I IG EGG+ E E Sbjct: 120 LLPFDQALKDASGREGETLLFYECGG----QRIPALVDAGCSELSIFIGSEGGFEPSEVE 175 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 SLG RILR +TA + A++++ Sbjct: 176 RAME-AGAQIASLGSRILRCETAPLCALSVL 205 >gi|298694859|gb|ADI98081.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 220 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134 DV IK ++ ++++QK+ E+G + R ++ ++R + A Sbjct: 48 DVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEGKVAKKIERWQKIIKEA 107 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNV 190 AEQ L +P I + L+ + D+ I+ A E + L + L V Sbjct: 108 AEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKV 167 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ GPEGG E + T + LGPRILR++TA + A++ + Sbjct: 168 LMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 212 >gi|296140458|ref|YP_003647701.1| hypothetical protein Tpau_2764 [Tsukamurella paurometabola DSM 20162] gi|296028592|gb|ADG79362.1| protein of unknown function DUF558 [Tsukamurella paurometabola DSM 20162] Length = 252 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 18/231 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 GD+ + A V R++ G+ ++L +G G VGKS + + V Sbjct: 22 GDEGRHAAAVRRIRVGEELVLSDGAGGFARCAAEAVGKSDVTVRCAQTWTVPAPSPRVIV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY---TQNTHYNMDRVRTYTISAAE 136 + + K++R + ++ + E G I P + R+ + R R SAA+ Sbjct: 82 VQALPKSDRAELAVELATEAGADEIVPWQAARCVARWDGAKSKAEKGVARWRAVARSAAK 141 Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 Q +P ++ T L LL + D N ++ GS L ++ + V I+ Sbjct: 142 QARRAYVPRVHDLVTGRELIPLLTSMDANVVVLHE----GSAVPLGEVD-FSVTTTVVIV 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG EE + L ++ P LGP +LR+ TAA A+ + + W Sbjct: 197 VGPEGGISPEELDALVAM-GAQPALLGPTVLRTSTAAAVALGAIGVLTDRW 246 >gi|148543950|ref|YP_001271320.1| hypothetical protein Lreu_0719 [Lactobacillus reuteri DSM 20016] gi|184153346|ref|YP_001841687.1| hypothetical protein LAR_0691 [Lactobacillus reuteri JCM 1112] gi|227364863|ref|ZP_03848910.1| protein of hypothetical function DUF558 [Lactobacillus reuteri MM2-3] gi|325682512|ref|ZP_08162029.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530984|gb|ABQ82983.1| protein of unknown function DUF558 [Lactobacillus reuteri DSM 20016] gi|183224690|dbj|BAG25207.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070126|gb|EEI08502.1| protein of hypothetical function DUF558 [Lactobacillus reuteri MM2-3] gi|324978351|gb|EGC15301.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 246 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 12/219 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87 H+L V+R + G + L +L+ +S + K+ + + S+ S Sbjct: 22 HHLLKVMRAEVGTTVELVLADHCVYLATLSATEPTATLKINQKLDADSELPVSVTLACGL 81 Query: 88 PIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 P + + ++QK+ E+G A R + ++R++ SAAEQ Sbjct: 82 PKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRN 141 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198 +P + L+ LL N+ +IV +E+ G ++L ++ +A+ ++ + GPEG Sbjct: 142 KIPQVEYSANLDQLLANYPATERIVAWEESAKQGETSALAQQFNALKPGDSILAVFGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G E ++ V LGPRILR++TA + MA + Sbjct: 202 GLSENEIAKMNEAGVVA-AGLGPRILRTETAPLYFMAAI 239 >gi|13357861|ref|NP_078135.1| hypothetical protein UU301 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761930|ref|YP_001752383.1| hypothetical protein UPA3_0309 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920402|ref|ZP_02931725.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508812|ref|ZP_02958267.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701985|ref|ZP_02971610.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11356793|pir||B82909 conserved hypothetical UU301 [imported] - Ureaplasma urealyticum gi|6899276|gb|AAF30710.1|AE002127_8 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827507|gb|ACA32769.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902842|gb|EDT49131.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675768|gb|EDT87673.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700758|gb|EDU19040.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 16/214 (7%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKI-------SYVGKSIRFKVEYQSRSQTKQSDV 82 H++ +V+RM+ D +++ N K ++++I + + K E ++ Q+ Sbjct: 22 HHIKNVMRMRLHDKVIVIN-KTKAFVAEIINLEPLHATIIKPYTLNCELATKIDLFQA-- 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDIL 141 IK N ++++QK+ E+G+ +I I + T N + +R+ T A EQ Sbjct: 79 -----SIKPNNFEWIVQKACELGVNSIYQTIFKRTYNHSLIKTNRILTIIKEACEQARRN 133 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 L Y + LLK I+ A E +A++IGPEGG+ Sbjct: 134 HLVNYYAQFSFNELLKYLRDYDLILIAYENEKQNLLNNAFKEELTYQKIALVIGPEGGFE 193 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E L +SL ILRS+TA++ +A Sbjct: 194 QMEINLLKQFDNAICISLTKTILRSETASLYLLA 227 >gi|225867798|ref|YP_002743746.1| hypothetical protein SZO_01840 [Streptococcus equi subsp. zooepidemicus] gi|225701074|emb|CAW97892.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 248 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 17/224 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQYI 85 D ++ V+R+ + + ++L +DG + +++ V S ++VE + + + V+ Sbjct: 20 DTIKHMFQVMRLTDQEKLVLVF-EDG--IKRLARVSDSSAYEVELIKELEENVEMPVEVT 76 Query: 86 FSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQ 137 + K ++LD + QK+ E+G AI V+ ++ +++ + AAEQ Sbjct: 77 IASGFPKGDKLDVITQKTTELGAAAIWGFPADWSVVKWDSKKLAKKQEKLAKIALGAAEQ 136 Query: 138 CDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVAIL 193 +P I LLK C + + + E S +L ++ V + Sbjct: 137 SKRNRVPEIKLFDQKGELLKQLKQFDKCFVAYEEAAKAGERSTLARELAGLSPGQKVLFI 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG S+E + +T + LGPRI+R++TA + A++ V Sbjct: 197 FGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALSAV 239 >gi|219684646|ref|ZP_03539589.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219672008|gb|EED29062.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRFKKGDKLNILL---KDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138 S +K ++D ++++ VE+G+ I + ++ N +T S A +Q Sbjct: 81 FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNQIVPKINFYNNFFYLPYSFCTTKYYVAHQSGML-----------LSKNESFDNFSKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP +LR+DTA + ++A +A+ GD+ Sbjct: 190 IIIGPEGCFSKPEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLAYFKALLGDY 241 >gi|218249900|ref|YP_002374877.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] gi|218165088|gb|ACK75149.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E +S+I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNILL---KDKELRVSEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|227552631|ref|ZP_03982680.1| protein of hypothetical function DUF558 [Enterococcus faecium TX1330] gi|257888142|ref|ZP_05667795.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257896967|ref|ZP_05676620.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|293378677|ref|ZP_06624836.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1] gi|227178257|gb|EEI59229.1| protein of hypothetical function DUF558 [Enterococcus faecium TX1330] gi|257824196|gb|EEV51128.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257833532|gb|EEV59953.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|292642717|gb|EFF60868.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1] Length = 254 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 18/232 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83 G+ YH++ V+RM+ D + L +++I+ + + + E + K+ S + Sbjct: 20 GETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAVYLKEIKKEENQKELPSSIT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 K +LD++IQKS E+G A V+ + R+ AAEQ Sbjct: 80 IASGYPKGEKLDWVIQKSTELGAQAFIGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETC--GSENSLEKLHAIAHIPNVAIL- 193 +P + T L + D++ +V +E+ G ++++ K+ + P IL Sbjct: 140 SHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEKSNVAKILSETK-PGSRILA 198 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG EE + + LGPRILR++T A + L+ A W Sbjct: 199 VFGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246 >gi|257885342|ref|ZP_05664995.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257821198|gb|EEV48328.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 254 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 18/232 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDV 82 G+ YH++ V+RM+ D + L FN + +++I+ + + + E + K+ S + Sbjct: 20 GENYHHIVRVMRMEPEDEVFLAFNDRIA-IVAEITEITEEAVYLKEIKKEENQKELPSSI 78 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAE 136 K +LD+++QKS E+G A V+ + R+ AAE Sbjct: 79 TIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAE 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAI 192 Q +P + T + L + D ++ A E + N+ + L + Sbjct: 139 QSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEKSNAAKILSETKPDSRILA 198 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + GPEGG +E + + LGPRILR++T A + L+ A W Sbjct: 199 VFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246 >gi|117924870|ref|YP_865487.1| hypothetical protein Mmc1_1572 [Magnetococcus sp. MC-1] gi|117608626|gb|ABK44081.1| protein of unknown function DUF558 [Magnetococcus sp. MC-1] Length = 227 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 12/152 (7%) Query: 92 NRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMDRVRTYTI--SAAEQCDILTLPFIY 147 R ++++K VE+G AI PVIT Y ++ + I AA QC LP + Sbjct: 72 ERFLWILEKGVELGATAIYPVITEKSYHEDAPALAKQGGWVRILQRAARQCRRAVLPRVG 131 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 P TLE ++ Q + + E L V + +GPEGG+ E+ Sbjct: 132 EPLTLEQAIEQGVGMAQWYL--DLSPTPLLGEPLQG-----AVQLFVGPEGGW-GEQDLA 183 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + V P +LGPR+LR++TAA+ A++ + A Sbjct: 184 IFRARGVAPRNLGPRLLRTETAALMALSWIAA 215 >gi|224533193|ref|ZP_03673793.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224511920|gb|EEF82321.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] Length = 243 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|303326762|ref|ZP_07357204.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3] gi|302862750|gb|EFL85682.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3] Length = 250 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + +L VLR+ GD + L +G+ G++ RF V S+ + ++ Sbjct: 21 GQEAKHLGQVLRLVPGDEVSLLDGQ-----------GRTGRFAVRAVSKKSARLECLRES 69 Query: 86 FSP------------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYT 131 F+P K R + ++K+VE+G A+ ++Q D + Sbjct: 70 FTPRPASLAVMALAFSKAVRRGFFMEKAVELGAHAVWLWQGDHSQGKLPAGARDSCQGQM 129 Query: 132 ISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A+Q LP + T ++ L++ Q + E EN +A V Sbjct: 130 IAGAKQSGNPWLPEVRALTGGVDELVELSRVADQRILPWEM--QENVPMLTPDLAGRTGV 187 Query: 191 AI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +IGPEGG+ + E + L + F +SLG RILR +TAA + + Sbjct: 188 TVYIIGPEGGFSARELDALRAAGFAA-ISLGARILRCETAATLCLGI 233 >gi|293556305|ref|ZP_06674890.1| protein YqeU [Enterococcus faecium E1039] gi|291601564|gb|EFF31831.1| protein YqeU [Enterococcus faecium E1039] Length = 254 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83 G+ YH++ V+RM+ D + L +++I+ + + + E + K+ S + Sbjct: 20 GENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAVYLKEIKKEENQKELPSSIT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 K +LD+++QKS E+G A V+ + R+ AAEQ Sbjct: 80 IASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAIL 193 +P + T + L + D ++ A E + N+ + L + + Sbjct: 140 SHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEKSNAAKILSETKPDSRILAV 199 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG +E + + LGPRILR++T A + L+ A W Sbjct: 200 FGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246 >gi|15594703|ref|NP_212492.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31] gi|8928457|sp|O51333|RSME2_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 2; AltName: Full=16S rRNA m3U1498 methyltransferase 2 gi|2688252|gb|AAC66730.1| conserved hypothetical protein [Borrelia burgdorferi B31] Length = 243 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDINNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|154248861|ref|YP_001409686.1| 16S ribosomal RNA methyltransferase RsmE [Fervidobacterium nodosum Rt17-B1] gi|154152797|gb|ABS60029.1| protein of unknown function DUF558 [Fervidobacterium nodosum Rt17-B1] Length = 225 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 23/234 (9%) Query: 16 LCIKTQGKASGDQYHYLAH--VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEY 71 CI D+ H + H V+R+KEG+ + +G G++ I +GK+ + + Y Sbjct: 6 FCIPKNDSVYFDE-HEVTHMKVMRLKEGEIVEATDGNGGKYKVIIKSIGKNEAYGNVLSY 64 Query: 72 QSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDRVR 128 + T V +F+P + RL + I+K+VE+G+ I V + HY+ D++ Sbjct: 65 EFVEVTNNKLV--LFAPSGRWERLRWTIEKAVELGVDEIY-VFNNERASRHYDDKQDKLE 121 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A++QC P I P L+ + + F S Sbjct: 122 LIVREASKQCVRYHFPTIKPIEFLDIFSLAPESTYILDFKGRKIPKRIS----------K 171 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +V I+ GPEGG+ E + L S + LG +ILR +TA + + G Sbjct: 172 SVGIIAGPEGGFSKSELKLLKSK--FKSICLGKKILRFETAIILSTGFFAMKLG 223 >gi|29376497|ref|NP_815651.1| hypothetical protein EF1975 [Enterococcus faecalis V583] gi|227519317|ref|ZP_03949366.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX0104] gi|256964753|ref|ZP_05568924.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257419655|ref|ZP_05596649.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|29343961|gb|AAO81721.1| conserved hypothetical protein TIGR00046 [Enterococcus faecalis V583] gi|227073246|gb|EEI11209.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX0104] gi|256955249|gb|EEU71881.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257161483|gb|EEU91443.1| conserved hypothetical protein [Enterococcus faecalis T11] Length = 250 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 17 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 76 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + +++V Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSVV 242 >gi|238060562|ref|ZP_04605271.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149] gi|237882373|gb|EEP71201.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149] Length = 244 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 21/233 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 SG + H+ A V R++ G+ +LL +G+ G + ++ VG+ ++ +V + + Sbjct: 20 SGPEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGRGTLDLRVTTRGYVDAHVPRLV 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY------TISAAEQ 137 + K +R + +Q E+G+ I P + VR AA+Q Sbjct: 80 VVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGERGVRAREKWVATAREAAKQ 139 Query: 138 CDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VA 191 LP + +T + V E + E+L A A +P+ + Sbjct: 140 ARRAWLPVVAGSPDESTAAVAGRIAGAAAAFVL------HEEAQERL-ATAELPDAGEIV 192 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG E T P LGP +LR+ TA VAA++ + W Sbjct: 193 LVVGPEGGITDAELATFTEA-GARPTRLGPSVLRTSTAGVAALSALSPRLSRW 244 >gi|69247931|ref|ZP_00604547.1| Conserved hypothetical protein 46 [Enterococcus faecium DO] gi|257880295|ref|ZP_05659948.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257882150|ref|ZP_05661803.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257890954|ref|ZP_05670607.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894209|ref|ZP_05673862.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258614757|ref|ZP_05712527.1| hypothetical protein EfaeD_03512 [Enterococcus faecium DO] gi|260562402|ref|ZP_05832916.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261209224|ref|ZP_05923616.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566140|ref|ZP_06446575.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293560713|ref|ZP_06677192.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|293566148|ref|ZP_06678551.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|294614194|ref|ZP_06694114.1| protein YqeU [Enterococcus faecium E1636] gi|294618772|ref|ZP_06698299.1| protein YqeU [Enterococcus faecium E1679] gi|294622231|ref|ZP_06701291.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|314938567|ref|ZP_07845851.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04] gi|314940912|ref|ZP_07847818.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C] gi|314948067|ref|ZP_07851469.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082] gi|314952049|ref|ZP_07855072.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A] gi|314991930|ref|ZP_07857385.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B] gi|314995188|ref|ZP_07860302.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01] gi|68194633|gb|EAN09120.1| Conserved hypothetical protein 46 [Enterococcus faecium DO] gi|257814523|gb|EEV43281.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257817808|gb|EEV45136.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257827314|gb|EEV53940.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257830588|gb|EEV57195.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260073326|gb|EEW61667.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260076770|gb|EEW64505.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162085|gb|EFD09950.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291590074|gb|EFF21866.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|291592970|gb|EFF24559.1| protein YqeU [Enterococcus faecium E1636] gi|291594960|gb|EFF26310.1| protein YqeU [Enterococcus faecium E1679] gi|291598273|gb|EFF29366.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291605304|gb|EFF34759.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313590597|gb|EFR69442.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01] gi|313593514|gb|EFR72359.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B] gi|313595839|gb|EFR74684.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A] gi|313600270|gb|EFR79113.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C] gi|313642124|gb|EFS06704.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04] gi|313645483|gb|EFS10063.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082] Length = 254 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83 G+ YH++ V+RM+ D + L +++I+ + + + E + K+ S + Sbjct: 20 GENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAVYLKEIKKEENQKELPSSIT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 K +LD+++QKS E+G A V+ + R+ AAEQ Sbjct: 80 IASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAIL 193 +P + T + L + D ++ A E + N+ + L + + Sbjct: 140 SHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEKSNAAKILSETKPDSRILAV 199 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG +E + + LGPRILR++T A + L+ A W Sbjct: 200 FGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246 >gi|298243472|ref|ZP_06967279.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM 44963] gi|297556526|gb|EFH90390.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 20/223 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 H + VLR+ + ++L + E L + S G+ + +E Q +V Sbjct: 31 HQVRDVLRLALDERLVLLDNSGEETLCAVKKSARGEVVVEVLERQRGKSESPVEVMLCQG 90 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVI-----TRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +K+ R +++++K E+G+ P T + R A+EQC Sbjct: 91 MLKSARFEWILEKGTELGVSTFLPTTCQRSTTGLEEAGTSKQKRWLRIIQEASEQCGRAR 150 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIV--FADETCGSENSL--EKLHAIAHIPN----VAILI 194 +P + P L +L + + + +E + S+ E + P V + I Sbjct: 151 VPTLLPVRPLMHVLGDIPEGTLALMPWEEERTQTLRSVLREAMTNYEEAPTQRLRVMLFI 210 Query: 195 GPEGGYHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEGG+ +EE H VT LG R+LR++TAA+A++A Sbjct: 211 GPEGGFMAEEVMMARRHGAKIVT---LGERVLRAETAAIASIA 250 >gi|160889128|ref|ZP_02070131.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492] gi|317480687|ref|ZP_07939774.1| RNA methyltransferase [Bacteroides sp. 4_1_36] gi|156861135|gb|EDO54566.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492] gi|316903194|gb|EFV25061.1| RNA methyltransferase [Bacteroides sp. 4_1_36] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 27/229 (11%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75 I+ + ++ + VLR++ GD ++L +GK + ++IS + + +E ++ Sbjct: 9 IQAHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128 Query: 135 AEQCDILTLP----------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +Q LP FI P + + + + + D E++L Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEKPLLKDMVHPGEDAL------ 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +LIGPEG + EE F+ P+SLG LR++TAA+ A Sbjct: 183 -------VLIGPEGDFSEEEVRKATENGFI-PISLGKSRLRTETAALVA 223 >gi|111018255|ref|YP_701227.1| hypothetical protein RHA1_ro01245 [Rhodococcus jostii RHA1] gi|110817785|gb|ABG93069.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 253 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 23/234 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ--TKQSDVQ 83 G + + A V R+ G+ I+L +G+ G ++++ K R ++ R Q V Sbjct: 22 GPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAAKD-RLELTVHKRRQVPAPSPSVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + + K R + ++ + E G+ AI P + R+ + R R+ ++AA+Q Sbjct: 81 VVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVEKGVARWRSAALAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIP-----NV 190 +P + L + + + G L + +A +P + Sbjct: 141 SRRAIVPEVS------ELHRTAEMLAVVREVVGRGGVVAVLHEAATQGLAELPLRSAAEI 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE L V P+ LGP +LR+ TAA A+ + + W Sbjct: 195 VLVVGPEGGISEEEITALTDAGAV-PVLLGPHVLRTSTAAAVALGAIGVLTDRW 247 >gi|312149696|gb|ADQ29767.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFAKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|257866973|ref|ZP_05646626.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873307|ref|ZP_05652960.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257801029|gb|EEV29959.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807471|gb|EEV36293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 251 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 25/241 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P K SG+ +H++ V+RM G + L ++KI + Sbjct: 1 MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + E + Q K+ +Q + K ++L+ ++QK E+G A I Q + Sbjct: 61 YLEEVEKEQQDKELPLQVTIASGYPKGDKLELIVQKGTELGAAAF---IGFPAQTSVVKW 117 Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADET 171 D+ + AAEQ +P I T L+ W ++ +V +E+ Sbjct: 118 DQKKLQKKQQRLQKIAQEAAEQSQRQIVPAI---TLLDNAKAFWQSLSQYDAVLVAYEES 174 Query: 172 CGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L I +P V + GPEGG E E LGPRILR++T Sbjct: 175 AKQGEAAMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQ-NNAKLCGLGPRILRTET 233 Query: 229 A 229 A Sbjct: 234 A 234 >gi|227555475|ref|ZP_03985522.1| protein of hypothetical function DUF558 [Enterococcus faecalis HH22] gi|307272833|ref|ZP_07554080.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855] gi|227175397|gb|EEI56369.1| protein of hypothetical function DUF558 [Enterococcus faecalis HH22] gi|306510447|gb|EFM79470.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855] gi|315574554|gb|EFU86745.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309B] gi|315581804|gb|EFU93995.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309A] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + +++V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSVV 237 >gi|332882920|ref|ZP_08450527.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679128|gb|EGJ52118.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 254 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 24/241 (9%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 + + D+ + VLR++ GD I L +GK + ++I+ GK FKV E Sbjct: 12 VAVDAELPADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLFKVLEAVPHP 71 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R++++ +K+ E+G + + RY++ +R+ +SA Sbjct: 72 KEWSGHLHLALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTERIDKILVSA 131 Query: 135 AEQCDILTLPFI-----------YPPTTLEFLLKNWDHN--CQIVFADETCGSENS---- 177 +Q P + P +F+ +D + A E + Sbjct: 132 MKQSHKARKPLLNEMEDFKRFVARPFAGQKFIAHCYDEADVAGVAKASEDKAMDGGKPFL 191 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L++L A + +L+GPEG + +E + F + +SLG LR++TAA+ A+ L+ Sbjct: 192 LDELDA---GQDALVLVGPEGDFSIDEVRLAQAHGFRS-VSLGRSRLRTETAALVAVHLM 247 Query: 238 Q 238 Sbjct: 248 H 248 >gi|269792239|ref|YP_003317143.1| hypothetical protein Taci_0625 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099874|gb|ACZ18861.1| protein of unknown function DUF558 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 239 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 26/171 (15%) Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAA 135 S V + +K ++ D +++ S E+G+ I PVI + + H + R R + + Sbjct: 75 SRVVLLVGLLKADQWDQVLRFSCELGVDQIVPVICERSVPRPDDWHRKVQRYRRILLEST 134 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP------- 188 QC L P I +L L D + E L A +P Sbjct: 135 RQCGALRPPTIGDLVSLREL-------------DPSGLPELRLGAFLADGAVPIGEVVPC 181 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +VA+ +GPEG + E E L + F P+SLGPR+LR+ TA AA++LV+ Sbjct: 182 GDVALAVGPEGDWAPWEAEALIGMGF-RPVSLGPRVLRASTAVAAAVSLVR 231 >gi|329962100|ref|ZP_08300111.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057] gi|328530748|gb|EGF57606.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 11/212 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQY 84 ++ + VLR++ GD + L +G + ++IS F VE + + + Sbjct: 18 EEAAHAVRVLRLQAGDEVTLTDGNGNFYRAEISTATNKRCFVNIVETLPQPALWDAHLHI 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q L Sbjct: 78 AMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSAIKQSLKARL 137 Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYH 201 P + T +F+ + ++ I E E L L I H A +LIGPEG + Sbjct: 138 PKLNEMTDFNKFITQPFEGQKFIAHCYE---GEKPL--LKDILHKGEDALVLIGPEGDFS 192 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 EE +T + ++ P+SLG LR++TAA+ A Sbjct: 193 EEEVKTALANGYI-PISLGRSRLRTETAALVA 223 >gi|257467709|ref|ZP_05631805.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185] gi|317062002|ref|ZP_07926487.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313687678|gb|EFS24513.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 12/210 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQSDVQYIFS 87 ++L +V R+K + I +G+ + +S K I ++E ++ R K + Sbjct: 25 NHLKNVFRIKLDEEIRAVDGEKEYFCKVVSIDKKEIILEIEQIFEDRYSHKVK-IDAALG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R D+ A +QC + I Sbjct: 84 ILKNDKMDLAIQKLTEIGINKIIPLSVKRGVAKITEKKDKWDLIVREALKQCQAVKATEI 143 Query: 147 YPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPN-VAILIGPEGGYHSE 203 LE + + +D +V C E +L+ L +P V +IG EGG+ E Sbjct: 144 DEVKKLEEIEFEKYD----LVIVPYECEEEYTLKNLLRNREKLPERVLYIIGSEGGFAPE 199 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E L S ++LG RILR++TA++ Sbjct: 200 EIEFLKSKK-ADIVTLGRRILRAETASIVV 228 >gi|225549046|ref|ZP_03770021.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|226320424|ref|ZP_03795991.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|225370272|gb|EEG99710.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|226234177|gb|EEH32891.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|312147992|gb|ADQ30651.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|145595966|ref|YP_001160263.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora tropica CNB-440] gi|145305303|gb|ABP55885.1| protein of unknown function DUF558 [Salinispora tropica CNB-440] Length = 244 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 21/233 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 +G + H+ A V R++ G+ +LL +G G ++ ++ VGK ++ ++ + + Sbjct: 20 NGPEGHHAATVQRLRAGEELLLADGCGGTAVAVVTAVGKGALELRITSRDHVDAPAHRLV 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRTY------TISAAE 136 + K R + +Q E+G+ I P T T + DR VR AA+ Sbjct: 80 VVQGLAKGERGELAVQAMTEVGVDTIVP-WTAGRSVTQWRGDRGVRARGKWVATAREAAK 138 Query: 137 QCDILTLPFIY--PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VA 191 Q LP + P + + E G E+L A +P+ + Sbjct: 139 QARRAWLPVVAGAPAEDTSAVARRIAQAAAAFVLHEQAG-----ERL-VTAELPDRGEIV 192 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG E T + LG +LR+ TA VAA++++ A G W Sbjct: 193 LVVGPEGGVAPGELAAFAEAGART-VRLGSSVLRTSTAGVAALSVLAARLGRW 244 >gi|111115181|ref|YP_709799.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo] gi|110890455|gb|ABH01623.1| conserved hypothetical protein [Borrelia afzelii PKo] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 32/232 (13%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YHYL +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHYLINVRRLKKGDKLNILL---KDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I + ++ NT R A +Q Sbjct: 81 FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHQSGML-----------LSKNESFDNFSKIG 189 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 I+IGPEG + + E F T + +LR+DTA + ++A + + D Sbjct: 190 IIIGPEGCFSNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240 >gi|145219108|ref|YP_001129817.1| hypothetical protein Cvib_0293 [Prosthecochloris vibrioformis DSM 265] gi|145205272|gb|ABP36315.1| protein of unknown function DUF558 [Chlorobium phaeovibrioides DSM 265] Length = 247 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQ-- 79 + GD++H++A VLR K GD + + +G +++I VG + R+ + E SRS + Sbjct: 19 RIEGDEFHHIARVLRKKTGDRLRVTDGTG--RVAEIEVVGLAKRWLEGEVLSRSVVPRPS 76 Query: 80 SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 + V S +K R D ++K+ E+G+G I P+I+ T + + R + Sbjct: 77 TRVTVALSMLKAPARFDMFLEKATELGVGGIIPMISHRTVSQPSGEKLAGKLQRWNNIIL 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 SAA Q LP + P +L ++ +++ +E+ Sbjct: 137 SAARQSKCFHLPELIGPLPFRSVLALEGYDNRLMPYEESS 176 >gi|156089341|ref|XP_001612077.1| hypothetical protein [Babesia bovis T2Bo] gi|154799331|gb|EDO08509.1| conserved hypothetical protein [Babesia bovis] Length = 265 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 7/186 (3%) Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQ 118 ++R ++ S ++ + + + LD ++Q S MG+G I V + Y + Sbjct: 66 TVRLSDKFLSDVPPERPLIDLVVGIPRPRSLDKLLQYSASMGVGRILLVCSSRVELDYLK 125 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + M + + EQ +P + +L L ++ + G+E++L Sbjct: 126 SHQLEMQNIEESLLLGMEQGVTTYMPEVQIHRSLGSLQRSLEKEPMATRLIAHPGTEDTL 185 Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L +H+ + + IGPEGG+ E + SL F ++G RILR++ AAVA ++ + Sbjct: 186 GSLGITSHLSGPILVAIGPEGGWLDHEVDFYASLGF-RKFNIGERILRAEVAAVAIISQL 244 Query: 238 QAICGD 243 Q + D Sbjct: 245 QLLLND 250 >gi|257457364|ref|ZP_05622535.1| RNA methyltransferase family protein [Treponema vincentii ATCC 35580] gi|257445286|gb|EEV20358.1| RNA methyltransferase family protein [Treponema vincentii ATCC 35580] Length = 257 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 20/235 (8%) Query: 25 SGDQYHYLAHVLRMKEGD---NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 SG + YL V RM+EGD +L +G + I+ V K +R + + ++ + Sbjct: 19 SGKDFVYLIKVRRMREGDVLHALLPQSGAAEMVIDLINTVKKELRLRRQTAPLGASRTAP 78 Query: 82 ------VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTI 132 +Q++ +K ++ D +I+++ E G+ A+ PVI ++ N ++R R Sbjct: 79 AAELILLQWV---LKGSKTDTIIRQATEAGICAVLPVIGEFSVAKKQNPAQLERFRRIIK 135 Query: 133 SAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A +Q + P L + LK VFA + SE S+ +A P+ Sbjct: 136 EARQQSGSPVDTAVTEPAPLAAVLNTLKALIPGAGTVFAMCSENSEASIGFHQLLAAKPS 195 Query: 190 VAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +L IG EGG E L F T + +LR++TAA+ A+A Q I + Sbjct: 196 CIVLAIGAEGGISPAEAAVLRGAAFQT-VHFKTNVLRAETAALYAIAAAQTIINE 249 >gi|206896455|ref|YP_002247218.1| conserved surface protein, putative [Coprothermobacter proteolyticus DSM 5265] gi|206739072|gb|ACI18150.1| conserved surface protein, putative [Coprothermobacter proteolyticus DSM 5265] Length = 242 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 8/211 (3%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 Y+ VLR + I++F+G E+++ KS+ + + S K + + Sbjct: 28 RYIEQVLRGAQDCKIVVFDGSGKEYITTYDIETKSLVIE-DVVSNCIQKSFSISLFQAVP 86 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI---LTLPFI 146 K +D +I ++G+ + P+IT T +++ + A E C + + I Sbjct: 87 KGTAMDDIIALCSQLGVDQVYPMITARTTVKQVGSNKLMRWQRIALESCKVGGFCSTTEI 146 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L L ++ ++F E N I ++A+++GPEGG+ E E Sbjct: 147 KQPLFLRDALALFNEADLVLFLYEN-AEANLRNYTTEIERANHIALVVGPEGGFDPSEAE 205 Query: 207 TLHSLPFVTPLSLGPRILRSDTAA-VAAMAL 236 L T SLG I RS AA VA MA+ Sbjct: 206 ELSKRAITT--SLGAVIFRSRWAASVAVMAI 234 >gi|227514619|ref|ZP_03944668.1| protein of hypothetical function DUF558 [Lactobacillus fermentum ATCC 14931] gi|227087030|gb|EEI22342.1| protein of hypothetical function DUF558 [Lactobacillus fermentum ATCC 14931] Length = 249 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATL-LDPATAE 59 Query: 67 FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 KVE Q + ++ + P + + ++QK+ E+G I R V Sbjct: 60 VKVE-QDLGGDSELPIKVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175 Q ++R++ T +AAEQ +P + L+ LL + + ++V +E+ G Sbjct: 119 QRQGKKVERLQKITNAAAEQSHRDQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGER 178 Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + ++ + GPEGG E ET+ + V LGPRILR++TA + M Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237 Query: 235 ALV 237 A V Sbjct: 238 AAV 240 >gi|189501155|ref|YP_001960625.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium phaeobacteroides BS1] gi|189496596|gb|ACE05144.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides BS1] Length = 248 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/222 (20%), Positives = 105/222 (47%), Gaps = 15/222 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 G+++ ++ VLR KE + I + +G ++I+ +G++ + V + + ++V Sbjct: 22 GEEFFHITKVLRKKEREVIHITDGMGLSVTAEITKIGRNGLTAAVTEKKKVLPPSAEVTV 81 Query: 85 IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 S +K++ R D+ ++K+ E+G+ I P+IT T + ++R + +SAA Q Sbjct: 82 ALSLLKSSQRFDFFLEKATELGVAGIVPMITERTVSQPKAEKRARKLERWKKVVVSAALQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 P I P + +LK ++ +++ + + + + ++ + + Sbjct: 142 TKRYHFPEITAPLHFDAVLKREGYDSKLIACETSSIAPD-------VSFFGRKVLFLVGG 194 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 G + E+ + +S G ILR++TA + A+A+ +A Sbjct: 195 EGGFTGEELEMAVKKGFCEISFGHSILRAETAGIFAVAMARA 236 >gi|257084824|ref|ZP_05579185.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992854|gb|EEU80156.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 250 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 17/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSI 65 ++R F+ K K + + YH++ V+RM D L+F K + S+ Sbjct: 1 MQRYFIKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNT 120 FK E K+ ++ + P K ++L++++QK E+G P T + Sbjct: 61 YFK-EISKEEMDKELPIEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWD 118 Query: 121 HYNM----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 H R++ AAEQ P + + ++ +D ++ A E + Sbjct: 119 HKKRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDTYDTVLVAYEESAKQG 178 Query: 177 SLEKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +L + + +L GPEGG+ +E E LGPRILR++TA + Sbjct: 179 EKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLY 237 Query: 233 AMALV 237 ++ V Sbjct: 238 LLSAV 242 >gi|257416411|ref|ZP_05593405.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158239|gb|EEU88199.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 250 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 17 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 76 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 135 EAAEQSHRQQTPTVSLVKKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242 >gi|288925123|ref|ZP_06419059.1| RNA methyltransferase, RsmE family [Prevotella buccae D17] gi|288338313|gb|EFC76663.1| RNA methyltransferase, RsmE family [Prevotella buccae D17] Length = 244 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/225 (21%), Positives = 109/225 (48%), Gaps = 12/225 (5%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQ-SRSQTK 78 Q + ++ + VLR+K GD + L +G + ++++ V GK ++++ + + T Sbjct: 15 QSELPEEEAGHALRVLRLKAGDEMFLMDGVGTFFRAEVTVVAGKHCMYEIKDRFPQHPTW 74 Query: 79 QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + +P K R+++M++K+ E+G I + ++++ DRV +SA +Q Sbjct: 75 RGHIHLAIAPTKMMERMEWMVEKATEVGFDEISFLGCKFSERKVLRADRVEKIVVSAMKQ 134 Query: 138 CDILTLPFIYPPTTL-EFLL-----KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 P + + EF+ + + +C F + SE +++ ++ Sbjct: 135 SRKAWKPVVNTMCSFGEFMAVEHPGRKYICHCYEEFPKKDFFSE--IQETIDYEDNEDIL 192 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L+GPEG + +E + + + +SLG LR++TA ++A+ + Sbjct: 193 VLVGPEGDFSVDEVQLALEKGYES-VSLGRSRLRTETAGLSAVMM 236 >gi|259503162|ref|ZP_05746064.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168877|gb|EEW53372.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 250 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 26/230 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS-- 87 H+L VLR + G + L +L+++ K+ Q + + VQ Sbjct: 23 HHLTTVLRAQRGTQVELVLADHQAYLAEVVATQPVTTVKL-LQKLAGNSELPVQVTLLCG 81 Query: 88 -PIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 P + ++++QK+ E+G I R V + R++ AAEQ Sbjct: 82 LPKTKEKPEWIVQKATELGATTIAFFEAERSVSHWAANKRERKLARLQKIADGAAEQSHR 141 Query: 141 LTLPFI-YPPTTLEFLLKN--------WDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 P + Y P + L+ N W+ + + ET L KL A + VA Sbjct: 142 NYQPQVTYYPGLHQALVANPAPVRLVAWEESAK---QGETSALAQQLAKLTAGGRL--VA 196 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 I GPEGG + E E + + VT + LGPRILR++TA + +A V C Sbjct: 197 IF-GPEGGLTTGEVEQMQAA-GVTAVGLGPRILRTETAPLYFLAAVSYAC 244 >gi|293571365|ref|ZP_06682396.1| protein YqeU [Enterococcus faecium E980] gi|291608581|gb|EFF37872.1| protein YqeU [Enterococcus faecium E980] Length = 254 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 18/232 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83 G+ YH++ V+RM+ D + L +++I+ + + + E + K+ S + Sbjct: 20 GETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAVYLKEIKKEENQKELPSSIT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 K +LD++IQKS E+G A V+ + R+ AAEQ Sbjct: 80 IASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETC--GSENSLEKLHAIAHIPNVAIL- 193 +P + T L + D++ +V +E+ G ++++ K+ + P IL Sbjct: 140 SHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEKSNVAKILSETK-PGSRILA 198 Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG EE + LGPRILR++T A + L+ A W Sbjct: 199 VFGPEGGLSHEEINYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246 >gi|256961537|ref|ZP_05565708.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256952033|gb|EEU68665.1| conserved hypothetical protein [Enterococcus faecalis Merz96] Length = 250 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D+ L+F K + S+ FK E K+ Sbjct: 17 KVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 76 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242 >gi|225552469|ref|ZP_03773409.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371467|gb|EEH00897.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRIKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIIPKINFYNNFFYLPYSFCTTKYYVAHPSGML-----------LSKNESFGNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSEPEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|293384704|ref|ZP_06630559.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712] gi|293387404|ref|ZP_06631959.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613] gi|312908310|ref|ZP_07767274.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 512] gi|312910616|ref|ZP_07769458.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 516] gi|291078011|gb|EFE15375.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712] gi|291083195|gb|EFE20158.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613] gi|310625724|gb|EFQ09007.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 512] gi|311289164|gb|EFQ67720.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 516] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D+ L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|29349736|ref|NP_813239.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides thetaiotaomicron VPI-5482] gi|253569899|ref|ZP_04847308.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384009|ref|ZP_06993570.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14] gi|29341646|gb|AAO79433.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840280|gb|EES68362.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263613|gb|EFI06476.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14] Length = 232 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 11/212 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQ 83 ++ + VLR+ GD I L +GK + ++I+ V + R V + + + Sbjct: 18 EEAQHCTRVLRLGIGDEITLTDGKGHFYKAEIT-VATNKRCLVAIKETIFQEPLWPCHLH 76 Query: 84 YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K +R +++ +K+ E+G + + R+++ +R+ ISA +Q Sbjct: 77 IAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISAIKQSLKAR 136 Query: 143 LPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 LP + T + F+ + + I E G + L+ + + +LIGPEG + Sbjct: 137 LPKLNEMTDFDKFIAQEFQGQKFIAHCYE--GEKPQLKNVLKAGE--DALVLIGPEGDFS 192 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 EE + F TP+SLG LR++TAA+ A Sbjct: 193 EEEVKKAIECGF-TPISLGKSRLRTETAALVA 223 >gi|315167500|gb|EFU11517.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1341] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKRQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|255972384|ref|ZP_05422970.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975487|ref|ZP_05426073.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256619449|ref|ZP_05476295.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762904|ref|ZP_05503484.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853489|ref|ZP_05558859.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256959288|ref|ZP_05563459.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257079354|ref|ZP_05573715.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082206|ref|ZP_05576567.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257090256|ref|ZP_05584617.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257422237|ref|ZP_05599227.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294779744|ref|ZP_06745131.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1] gi|300860530|ref|ZP_07106617.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD Ef11] gi|255963402|gb|EET95878.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968359|gb|EET98981.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598976|gb|EEU18152.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684155|gb|EEU23850.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711948|gb|EEU26986.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949784|gb|EEU66416.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256987384|gb|EEU74686.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990236|gb|EEU77538.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256999068|gb|EEU85588.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257164061|gb|EEU94021.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294453118|gb|EFG21533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1] gi|295113239|emb|CBL31876.1| RNA methyltransferase, RsmE family [Enterococcus sp. 7L76] gi|300849569|gb|EFK77319.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD Ef11] gi|323481110|gb|ADX80549.1| RNA methyltransferase family protein [Enterococcus faecalis 62] gi|327535490|gb|AEA94324.1| RsmE family RNA methyltransferase [Enterococcus faecalis OG1RF] Length = 250 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 17 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 76 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242 >gi|216264326|ref|ZP_03436318.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221217796|ref|ZP_03589264.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223888845|ref|ZP_03623436.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224533755|ref|ZP_03674343.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225550091|ref|ZP_03771051.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|226321674|ref|ZP_03797200.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|215980799|gb|EEC21606.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221192473|gb|EEE18692.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223885661|gb|EEF56760.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224513048|gb|EEF83411.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369203|gb|EEG98656.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|226232863|gb|EEH31616.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D+ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241 >gi|307287880|ref|ZP_07567913.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109] gi|306501025|gb|EFM70332.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109] Length = 251 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|189467796|ref|ZP_03016581.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM 17393] gi|189436060|gb|EDV05045.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM 17393] Length = 232 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75 I+T+ + ++ + VLR+ GD I L +GK + ++IS + + +E + Sbjct: 9 IQTRAELPEEEAQHCIRVLRLNIGDQITLTDGKGYFYRAEISAATNKRCMVNILETIYQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ ++R+ +SA Sbjct: 69 PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKIERISKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T +F+ + + I E E L K + + +L Sbjct: 129 IKQSLKARLPQLNEMTDFNKFIAQPFKGQKFIAHCYE---GEKPLLK-DVLRKGEDALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + EE + F TP+SLG LR++TAA+ A Sbjct: 185 IGPEGDFSEEEVQKAIENGF-TPISLGKSRLRTETAALVA 223 >gi|169628757|ref|YP_001702406.1| hypothetical protein MAB_1667 [Mycobacterium abscessus ATCC 19977] gi|169240724|emb|CAM61752.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 258 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGK----DGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 GD+ H+ A VLRM+ G+ +++ +G DG ++ + G +I + + + Sbjct: 23 GDEGHHAARVLRMRVGEPVMVCDGAGEVGDGV-VASVDRTGLAIEVTGRWSVAAVNPK-- 79 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAA- 135 V + + K++R D + +VE G + P ++R+ + R AA Sbjct: 80 VTVVQALPKSDRSDLAVDLAVEAGADEVIPWQAQRCVSRWDAHKAEKGRRRWEAVAQAAS 139 Query: 136 ---EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPNVA 191 + + ++P ++ L L+ +V +E+ L L A ++ +V Sbjct: 140 RQSRRAHVPSVPELHSTAQLAELVGARAAGGAVVLVLHES-AESGLGALGARLSSASSVV 198 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +++GPEGG EE L P+ LGP +LR+ + Sbjct: 199 LIVGPEGGVADEELRILADA-GAAPVRLGPTVLRTSS 234 >gi|163840667|ref|YP_001625072.1| 16S ribosomal RNA methyltransferase RsmE [Renibacterium salmoninarum ATCC 33209] gi|162954143|gb|ABY23658.1| coserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 256 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 15/231 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDV 82 +GD+ H+ A V R+ +++ + +G G L+ I V QSR Q + Sbjct: 25 AGDEGHHAATVKRIAVDEHLDIVDGV-GLRLNCIVLQTAPGTLTVRVQSRLAEPAPQPRL 83 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAE 136 + + K R + I+ + E+G+ A+ R ++ + +M + +A + Sbjct: 84 VLVQALAKDGRDELAIETATELGVDAVIPWQADRSIVRWRPERVEKSMAKWAKTIQAATK 143 Query: 137 QCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 Q P + P L+K + +V +E + + L+ + + + ++ Sbjct: 144 QARRARTPLLLDPVDSPGLVKRIALLPKSRMLVLHEE--ATTDLLQLVDQYKDVEELLLV 201 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG E E L S L LGP +LRS TA AA+ L+ G W Sbjct: 202 VGPEGGMSDRELE-LFSSAGSEKLRLGPHVLRSSTAGPAAVVLLSEALGRW 251 >gi|299142603|ref|ZP_07035734.1| RNA methyltransferase, RsmE family [Prevotella oris C735] gi|298576038|gb|EFI47913.1| RNA methyltransferase, RsmE family [Prevotella oris C735] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/208 (19%), Positives = 98/208 (47%), Gaps = 5/208 (2%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91 VLR++ GD++ L +G+ + +++S K + E + +T + + +P K Sbjct: 29 VLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYTIKENLPQQKTWRGHIHLAIAPTKNI 88 Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 +R++++ +K+ E+G + + +++ DR+ +SA +Q +P + + Sbjct: 89 DRMEWLAEKATEIGFDELSFLHCAFSERKVLRADRIEKIVVSAVKQSRKPWMPQVNALES 148 Query: 152 L-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS 210 +F+ + + I E ++ ++ + +L+GPEG + +E + Sbjct: 149 FKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDDQKNEQITVLVGPEGDFSIDEVRLAMA 208 Query: 211 LPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + +SLG LR++TA + A+ + Q Sbjct: 209 QGYES-ISLGESRLRTETAGLMAVTMAQ 235 >gi|34558434|ref|NP_908249.1| 16S ribosomal RNA methyltransferase RsmE [Wolinella succinogenes DSM 1740] gi|34484153|emb|CAE11149.1| conserved hypothetical protein [Wolinella succinogenes] Length = 220 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 28/222 (12%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKVEYQSRSQTKQSD 81 + G+++HYL V R K + L N +DG+ + K + + K + + ++ Sbjct: 15 RIEGEEFHYLFKVRRTKSEELPLFRNLEDGKLYRYKAAEIAKR---HADLELLEAKEEEK 71 Query: 82 VQYIFSPIKTNRLDY-MIQKSV----EMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAA 135 + F + +D I+KS+ E+G+G I RY+Q + +M+R+ I + Sbjct: 72 IPCAFFHLLWAVVDAKTIEKSLPMLNELGVGKISFFYARYSQRDIRLDMERLGRILIHSC 131 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV--AIL 193 EQ LP I LE LL+ + + F E P V AI+ Sbjct: 132 EQSGRTRLPVIECFKNLEELLECYSDFGVMDFGGEILQ--------------PKVCQAIM 177 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +GPEGG+ EE+E L + S IL+S+TAA+ A+A Sbjct: 178 VGPEGGFSQEEREKLVGQKRYS--SGENLILKSETAALFALA 217 >gi|229545442|ref|ZP_04434167.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX1322] gi|229549686|ref|ZP_04438411.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC 29200] gi|307268138|ref|ZP_07549525.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248] gi|307275914|ref|ZP_07557047.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134] gi|307277697|ref|ZP_07558783.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860] gi|307295909|ref|ZP_07575741.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411] gi|312900878|ref|ZP_07760172.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470] gi|312902754|ref|ZP_07761958.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635] gi|312951285|ref|ZP_07770186.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102] gi|229305166|gb|EEN71162.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC 29200] gi|229309358|gb|EEN75345.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX1322] gi|306496240|gb|EFM65819.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411] gi|306505576|gb|EFM74760.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860] gi|306507244|gb|EFM76381.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134] gi|306515528|gb|EFM84056.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248] gi|310630721|gb|EFQ14004.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102] gi|310633808|gb|EFQ17091.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635] gi|311291977|gb|EFQ70533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470] gi|315028901|gb|EFT40833.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4000] gi|315034530|gb|EFT46462.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0027] gi|315152591|gb|EFT96607.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0031] gi|315157276|gb|EFU01293.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0043] gi|315159889|gb|EFU03906.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0312] gi|315161371|gb|EFU05388.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0645] gi|315163668|gb|EFU07685.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1302] gi|315169384|gb|EFU13401.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1342] gi|315174316|gb|EFU18333.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1346] gi|315576685|gb|EFU88876.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0630] gi|329568734|gb|EGG50534.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1467] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|308177465|ref|YP_003916871.1| hypothetical protein AARI_16860 [Arthrobacter arilaitensis Re117] gi|307744928|emb|CBT75900.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117] Length = 257 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 33/242 (13%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82 +G + H+ V R+ G+++ L +GK +++ K + V+ R++ SD V Sbjct: 25 AGAEAHHAVTVKRVTAGEHLDLLDGKGLRLTVEVTATAKDL-LSVKVLRRTEEAISDHPV 83 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAE 136 + + K +R ++ VE+G+ A+RP I R+ M + R SA + Sbjct: 84 TLVQALSKGDRDLQAVESGVELGVLAVRPWQADRSIVRWNAAKVDKAMAKWRAQVRSAQK 143 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---------ENSLEKLHAIAHI 187 Q P + P + L K + AD G+ ENS+ + I+ + Sbjct: 144 QSRRAYEPEVLAPLGSKELAKT-------IAADVANGALVLVLHEQAENSVAE-RVISWL 195 Query: 188 P------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 P V +++GPEGG E ++ L LG +LR+ TA AA+ L++ + Sbjct: 196 PRAHAGQEVIVIVGPEGGISDTELQSFIDAGAHAAL-LGQHVLRASTAGPAALVLIRHLI 254 Query: 242 GD 243 G+ Sbjct: 255 GE 256 >gi|257087179|ref|ZP_05581540.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256995209|gb|EEU82511.1| conserved hypothetical protein [Enterococcus faecalis D6] Length = 250 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 17 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 76 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEKSQLAQVLSTCQPGA 194 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242 >gi|15829013|ref|NP_326373.1| hypothetical protein MYPU_5420 [Mycoplasma pulmonis UAB CTIP] gi|14089957|emb|CAC13715.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 223 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQC-DI 140 S I T R + IQK+ E+G+ P++++ + N + R +T ++A EQ Sbjct: 73 SVINTKRFELTIQKAAELGVSLFIPMLSQNVEQKLGNDIDKKLQRWKTIALNACEQSFRN 132 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 + YP K+++ ++ ++ E + + L + N LIGPEGG+ Sbjct: 133 KVMEITYP--------KSFNEVIEMEVKNKYIAHEKAKDFLTKSSFETNSLFLIGPEGGF 184 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E + F + LG RILR++TAA ++ + Sbjct: 185 SQKEIDLAQEKSF-ELIWLGKRILRAETAAFFVLSRI 220 >gi|33240474|ref|NP_875416.1| hypothetical protein Pro1024 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238002|gb|AAQ00069.1| Uncharacterized conserved protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 254 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 36/258 (13%) Query: 5 SHLKRLFVDFPLCIKTQG------KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK- 57 + L+RL +D PL I +G + HYLA VLR++ GD+I + +G W + Sbjct: 2 AELRRLLID-PLRINKSSLNNNIIDLTGQESHYLARVLRLRYGDHINIVDGVGHLWTADF 60 Query: 58 ISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 I + + +++K++ + + + D +++ S E+G+ ++P+I+ + Sbjct: 61 IKEDLIKLHSDLSNPEVTESKKNPLICLAVVVPKQDFDDILRMSTEIGIDVLQPIISDRS 120 Query: 118 QNTHYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKN-W--DHNCQIVFADET 171 ++ +RV+ + A EQ + L + P E + N W + + A T Sbjct: 121 VVRNFQSERVKRWDSIINEAVEQSEQL-----WKPKLKEIICFNEWIDIYRKSTLMALGT 175 Query: 172 CGSENSLEKLHAIAHIPN----VAILIGPEGGYH------SEEKETLHSLPFVTPLSLGP 221 +N++ + I + + I IGPEGG+ + EKE + L L Sbjct: 176 TRIDNAIPFESLLNDIKDDLNQICIAIGPEGGWSNHEIFLAREKECANVL-------LAD 228 Query: 222 RILRSDTAAVAAMALVQA 239 IL++ TAA+ A ++ + Sbjct: 229 TILKNTTAAIVATQIMSS 246 >gi|315025980|gb|EFT37912.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2137] Length = 245 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|148272747|ref|YP_001222308.1| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830677|emb|CAN01617.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 252 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 15/232 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDV 82 +G + + V R++ G+ IL+ +G+ G S S + + +V+ V Sbjct: 24 AGQEARHAVTVSRVRSGEGILVGDGR-GTIASGTVTSAEPQRLELRVDAVEAHPEPTPRV 82 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136 + + K +R + +Q + E+G+ A+ P ++R+ Q DR R A + Sbjct: 83 VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAVK 142 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAI 192 Q +P + T + L++ +++ D T + S L +V + Sbjct: 143 QSIRPRVPEVEALATTKDLVRM-AATARVLVLDPTAVARLSRLDLATADGDAGPATDVLL 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG E E+L + + P++LGP ILR+ TA AA+ALV A G W Sbjct: 202 VVGPEGGIAPAEVESLRAAGAI-PVALGPGILRTSTAGPAALALVNAALGRW 252 >gi|330686119|gb|EGG97740.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU121] Length = 250 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 18/220 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86 H++ +V+R EG I++ + KI ++ +VE + Q+I Sbjct: 25 HHIKNVMRHSEGQLIVITFNDQNVYTCKIIHLADQ-EVEVELIEKQDIDTELPQHITICS 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 IK ++ ++MIQK+ E+G R ++ ++R + AAEQ Sbjct: 84 GLIKADKYEWMIQKATELGASGFIAVEMQRSIVKLNHTKVSKKLERWQKIIKEAAEQSYR 143 Query: 141 LTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAILIG 195 LT+P ++ ++ ++ +D+ + + +E E S K L V ++ G Sbjct: 144 LTIPHISYLSNSKSICDIINQYDY-VLVAYEEEAKHGEISHFKHMLKQFKPQDRVLLIFG 202 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 PEGG EE L S + + LGPRILR++TA + + Sbjct: 203 PEGGLSDEEVSMLKSHSQL--VGLGPRILRAETAPLYTLG 240 >gi|223934148|ref|ZP_03626091.1| protein of unknown function DUF558 [Streptococcus suis 89/1591] gi|223897189|gb|EEF63607.1| protein of unknown function DUF558 [Streptococcus suis 89/1591] Length = 248 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK+ E+GM A+ V+ + +++ AAEQ + Sbjct: 84 KGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKLGKKAEKLEKIAQGAAEQSKRNRI 143 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGP 196 P + ++FL L +D QI+ A E E N ++ L + +V +++GP Sbjct: 144 PAVRLFEKKVDFLAQLAGFD---QIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGP 200 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG EE V LGPRILR++TA + A++ + Sbjct: 201 EGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSAI 240 >gi|222100185|ref|YP_002534753.1| hypothetical protein CTN_1211 [Thermotoga neapolitana DSM 4359] gi|221572575|gb|ACM23387.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 222 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYIF 86 + H++ V+R+KEG+ + +G+ + ++ + KS K+ + + + S+ + Sbjct: 20 EAHHM-RVVRLKEGETVETTDGEGFSYTCVLTRLKKSEAVAKILKIEKKEEEPSEKLKVV 78 Query: 87 SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLP 144 PI + R +I+K VE+G I ++ R+ ++ H ++++ AA+QC Sbjct: 79 VPIGRWERTRLLIEKCVELGADEI--LLYRFERSQHSVSLEKSLLVVREAAKQCR----R 132 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 +++P + ++N D + + + D GS N LE + ++ I++GPEGG+ E Sbjct: 133 YLFPKVKM---VENLDFDEKAITLDPD-GSVNLLE----MDVSGSITIVVGPEGGFSERE 184 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 KE L + ++LG +ILR +TAA+ + + Sbjct: 185 KELLKQRTIL--VNLGRKILRFETAAILTVGYI 215 >gi|254774749|ref|ZP_05216265.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium subsp. avium ATCC 25291] Length = 253 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 25/220 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 GD+ + A V R++ G+ ++L +G G ++ + G+ +R +V + V Sbjct: 21 GGDEGFHAASVRRIRPGEQLVLGDGAGGLAHCEVEHAGRDGLRARVLKRWSVAPGTPPVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + I+ + E G A R V + + R R SAA Q Sbjct: 81 VVQALPKSARSELAIELATEAGADGFLAWQAARCVANWHGARVEKGLRRWRAVARSAARQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-------ENSLEKLHA--IAHIP 188 +P + + L DE G E++ E+L +A Sbjct: 141 SRRAHIPLVDGVLSTPALTSR--------IRDEVAGGATVLALHESATERLADADLAGAT 192 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +V +++GPEGG +E L S T + LGP++LR+ T Sbjct: 193 SVLLVVGPEGGIADDEMAAL-SDAGATAVRLGPQVLRTST 231 >gi|224531913|ref|ZP_03672545.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511378|gb|EEF81784.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 243 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 42/237 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD ILL KD E +S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRLKKGDKLKILL---KDKELRMSEIVKIGSNFIKFATNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V NT R A +Q Sbjct: 81 FISSLKGKKIDSVLRQIVEIGVSEINIINADRSVSKIDISNTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ G S E I Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTKYYVAHQSGMLL-----GKNESFENFSKI------G 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 I+IGPEG + E ++ + + F TP ILR+DTA + ++A +A+ D Sbjct: 190 IIIGPEGCFSDSEISFFKEKDFNFVRFNTP------ILRADTAIIYSLAYFKALLED 240 >gi|172041014|ref|YP_001800728.1| hypothetical protein cur_1334 [Corynebacterium urealyticum DSM 7109] gi|171852318|emb|CAQ05294.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 245 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 34/244 (13%) Query: 21 QGKASGDQYHYL------AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 QG A GD + V R+ +G+ +++ +G S G + +E Sbjct: 8 QGVAVGDSVQLTGAEARHSQVKRIADGEAVIVSDGAATAVRGTFSSAGVHVSELLELPQP 67 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRT 129 S V + + K++R + + V+ G I P I R+ + + R Sbjct: 68 SPR----VTIVQALPKSDRSELAVDLMVQAGADRIIPWAASRCIARWDKKEDKALARWEK 123 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH------- 182 +A +Q L LP I LL+N ++V + S L LH Sbjct: 124 TAFAATKQSRRLVLPEIT------GLLRNLTDLPKLVPGLASPASTARLGMLHEDARGSF 177 Query: 183 -----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + ++ ++IGPEGG EE TL L + + LGP +LR+ TA A+ + Sbjct: 178 RTFVEGAADVEDIVLVIGPEGGIAPEELATLEELGGQS-VVLGPEVLRTATAGAVALGAI 236 Query: 238 QAIC 241 A+ Sbjct: 237 GALT 240 >gi|270293092|ref|ZP_06199303.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143] gi|270279071|gb|EFA24917.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143] Length = 251 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 15/224 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88 ++ V+R+KEGD + L + L+++ V ++ +F++ + + + VQ + Sbjct: 27 KHMFQVMRLKEGDEVTLVFEDGIKRLARVLNV-EARQFEL-LEELADNVELPVQVTIASG 84 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 85 FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 144 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197 +P I L D IV A E E L+ + +A + + GPE Sbjct: 145 LVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEGEASALLQAVTGLATGAKLLFIFGPE 204 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG E E+ + V LGPRILR++TA + A++ + + Sbjct: 205 GGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 247 >gi|167765138|ref|ZP_02437251.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC 43183] gi|167696766|gb|EDS13345.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC 43183] Length = 232 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75 I++Q + ++ + VLR++ GD + L +GK + ++IS + + +E ++ Sbjct: 9 IQSQAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATTKRCLVNILETIPQA 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T F+ + ++ I E E L K + + +L Sbjct: 129 IKQSLKARLPRLNGMTDFNRFISQPFEGRKFIAHCYE---GEKPLLK-DVVRKGEDALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + EE + F P+SLG LR++TAA+ A Sbjct: 185 IGPEGDFSEEEVKQAIENGF-EPISLGRSRLRTETAALVA 223 >gi|167912563|ref|ZP_02499654.1| hypothetical protein Bpse112_18894 [Burkholderia pseudomallei 112] Length = 200 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 13/154 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 66 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 + + R ++ EQC LP I P Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP 158 >gi|330837775|ref|YP_004412416.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta coccoides DSM 17374] gi|329749678|gb|AEC03034.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta coccoides DSM 17374] Length = 263 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 35/246 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGE---WLSKISYVGKS--IRFKVEYQSRSQTKQ 79 S + YL VLR EG F+G+D WL + VG S +R + + Sbjct: 19 SPKESRYLVSVLRFPEGKT---FSGRDASGTPWLLTLQKVGASYGLRCTPATEDDATENA 75 Query: 80 SDVQYIFSP-----------IKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYN 123 +D +++ +K +L+ +I+++ EMG+ I PV + + + N Sbjct: 76 ADAMPLYTGFLPAIHLFPCLLKGKKLEGVIRQACEMGVRRITPVHSAHCVASFVDDEKRN 135 Query: 124 MDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE------TCGS 174 +++ + A +Q + + P + W + +F + + G Sbjct: 136 AGKIQRFEAQVREAVQQSGSRIITEVTPAIPFSDIPTAWGSSGPGLFFHQGQNDALSFGQ 195 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + H +A P +AI+IGPEGG EE L + F L L ILR++TAA+ A+ Sbjct: 196 RIALIRNHVLAGAP-LAIVIGPEGGLSPEECALLEASGFHGVL-LKTNILRAETAAIYAI 253 Query: 235 ALVQAI 240 A Q++ Sbjct: 254 AAAQSL 259 >gi|315033292|gb|EFT45224.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0017] gi|315143405|gb|EFT87421.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2141] Length = 245 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--- 189 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 CLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|289523493|ref|ZP_06440347.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503185|gb|EFD24349.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 225 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQS----- 80 + H+L HV R + G+ F G G+ + K+E Q R K++ Sbjct: 8 ESHHLVHVRRCRIGEE---FEG---------LLEGRKLLLKIEGYEQGRVIAKETGKLPI 55 Query: 81 -----DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTY 130 + + + +K N + ++ + E+G+ I P+ + + M+R R Sbjct: 56 YERSRQISLLIALVKNNAFEDILNHATELGVAEIIPILAERSVVQLKGQLTKKMERWRRI 115 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGSENSLEKLHAIAH 186 A + I P ++ P + L + +++ A + GS N I Sbjct: 116 IAEATKISGIGNPPLLHTPLKVLDLRDESLPSLRLLGALTDDAKPLGSVN-------IKQ 168 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +V +GPEG + E L F+ P+SLGP ILR++TAA+A ++ + Sbjct: 169 QEDVVFAVGPEGDWTEGEMAYFARLKFL-PVSLGPNILRANTAAIAGLSYI 218 >gi|254819390|ref|ZP_05224391.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium intracellulare ATCC 13950] Length = 253 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 25/220 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 GD+ + A V R++ G+ ++L +G G ++ + G+ +R +V + V Sbjct: 21 GGDEGFHAASVRRIRPGEQLVLGDGAGGLARCEVEHAGRDGLRARVLKRWSVAPGTPPVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + I+ + E G A R V + R R SAA Q Sbjct: 81 VVQALPKSERSELAIELATEAGADGFLAWRAARCVANWQGARVEKGLRRWRAVARSAARQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-------ENSLEKL-HA-IAHIP 188 +P + + L DE G E++ E+L HA +A Sbjct: 141 SRRAHIPPVDGVLSTPALTSR--------IRDEVAGGATVLALHESATERLAHADLAGAT 192 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +V +++GPEGG +E L S T + LGP++LR+ T Sbjct: 193 SVFLVVGPEGGIADDEMAAL-SDAGATAVRLGPQVLRTST 231 >gi|78779053|ref|YP_397165.1| hypothetical protein PMT9312_0668 [Prochlorococcus marinus str. MIT 9312] gi|78712552|gb|ABB49729.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 257 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 33/234 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S ++ HY+ V+R+K G I + NGK W K+I+ K + Q K+ Y Sbjct: 25 SKEEAHYINKVMRIKNGKEIFISNGKGSLW--------KAIKVKNDCLEIIQFKKP---Y 73 Query: 85 IFSP-----------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYT 131 +F I + + +++ E+G+ I+P+ + N + N R +R + Sbjct: 74 LFQEQEIYLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNS 133 Query: 132 I--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAH 186 I A EQ + L P I + LK+ D+ ++ + ++T N + A Sbjct: 134 IINEAVEQSERLWKPSILNGMDIIEWLKSRDNQERVSISITREDTTYDLNQWIRKQQEAV 193 Query: 187 IPNVAI---LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I +IGPEGG+ S+E + + +T + L ILR+ TA++ A +++ Sbjct: 194 NKKGGIFWNVIGPEGGWSSKEIDFFNK-NNITFVKLSDNILRTSTASINASSIL 246 >gi|171463044|ref|YP_001797157.1| protein of unknown function DUF558 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192582|gb|ACB43543.1| protein of unknown function DUF558 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 253 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%) Query: 30 HYLAHVLRMKEGDNILLFNGK----DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 H+L V R++ G+ +F+GK GE LS G+ + + +T + + Sbjct: 24 HHL-RVRRIQIGEFFPVFDGKGQIAKGELLSLGGKTGQVQLTNIRTDTHRETPYA-ITLA 81 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPV--------ITRYT--QNTHYNMDRVRTYTISAA 135 +++D++++K+VE G I P+ +TR + + T + +A Sbjct: 82 QGLAGGDKMDWIVEKAVETGAQNIAPMQCERSILKLTRSSDAERTQKRLAHWEGIIQAAC 141 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIP-NVAIL 193 EQCD + P T E LK +++ + + S S+ I + P ++ ++ Sbjct: 142 EQCDRTVFASLEPIQTFESYLKAAPKPALKLLLSPDASKSMYSV----LIENKPQDIVLM 197 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 IGPEGG HS E+E +SLG R+LR++TA V A+ V ++ Sbjct: 198 IGPEGG-HSPEEEAQAEAAGYQLVSLGERVLRTETAGVVAITAVHSV 243 >gi|299783149|gb|ADJ41147.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 244 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDXATA-E 59 Query: 67 FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 KVE Q + ++ + P + + ++QK+ E+G I R V Sbjct: 60 VKVE-QDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175 Q ++R++ +AAEQ +P + L+ LL + + ++V +E+ G Sbjct: 119 QRQGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGER 178 Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + ++ + GPEGG E ET+ + V LGPRILR++TA + M Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237 Query: 235 ALV 237 A V Sbjct: 238 AAV 240 >gi|315149224|gb|EFT93240.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0012] Length = 245 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|195978884|ref|YP_002124128.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975589|gb|ACG63115.1| hypothetical protein Sez_1788 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 248 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 19/225 (8%) Query: 27 DQYHYLAHVLRMKEGDN-ILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQY 84 D ++ V+R+ + + +L+F+ DG + +++ V S ++VE + + + V+ Sbjct: 20 DTIKHMFQVMRLTDKEELVLVFD--DG--IKRLARVSDSSAYEVELIKELEENLEMPVEV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAE 136 + K ++LD + QK+ E+G AI V+ ++ +++ + AAE Sbjct: 76 TIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKKLAKKQEKLAKIALGAAE 135 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVAI 192 Q +P I LLK C I + + E S +L ++ V Sbjct: 136 QSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERSTLARELAGLSPGQKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG +E +T + LGPRI+R++TA + A++ V Sbjct: 196 IFGPEGGISPKELAGFKQAGAIT-VGLGPRIMRTETAPLYALSAV 239 >gi|293363228|ref|ZP_06610112.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2] gi|292553087|gb|EFF41836.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2] Length = 230 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 16/158 (10%) Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-------NMDRVRTYTISAAEQCD 139 S IK R +++IQK++E+G I P+I+++T + Y DR T SA EQ Sbjct: 74 SIIKIERYEWLIQKAIELGATKIVPIISKHTDGSIYKHDKFAKKYDRFNTIIKSATEQS- 132 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAHI-PNVAILIGPE 197 F TL+ ++ + + + E L+K + I +V +GPE Sbjct: 133 -----FRNKLITLDPIMDYKKAIYKYKYINNKYIAHEIDLQKTSKLDKIKSDVIFFVGPE 187 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GGY E + + + LG RILR++TA++ ++ Sbjct: 188 GGYDQSEIDYALENNY-KCIYLGKRILRAETASIYLLS 224 >gi|270291335|ref|ZP_06197557.1| ribosomal RNA small subunit methyltransferase E [Pediococcus acidilactici 7_4] gi|270280181|gb|EFA26017.1| ribosomal RNA small subunit methyltransferase E [Pediococcus acidilactici 7_4] Length = 245 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 21/237 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64 ++R F++ L ++ + S H+L V+R + G+ I + WLS++ + V S Sbjct: 1 MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQKVWLSQLLDNAVPAS 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ V+ ++S +V K ++ + +I++ EMG + RY+ + Sbjct: 61 LK-AVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R +AAEQ +P + + + + H + A E E Sbjct: 120 KIDRKLQRFEEIAKAAAEQSHRQMIPTVEIISFADLVNSPVQHR---MVAYEESAKEGEF 176 Query: 179 EKLHAIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + N A + GPEGG EE ++ + F T LGPRILR+++A Sbjct: 177 ANFKRV--LSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESA 230 >gi|26553614|ref|NP_757548.1| hypothetical protein MYPE1610 [Mycoplasma penetrans HF-2] gi|26453620|dbj|BAC43952.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 234 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTY 130 +++ K D+ IK + + K E+ + I PV Y+Q N + N R+ Sbjct: 63 ENKLSNKPYDITCFLGVIKKQNFELAVVKLSELNIKKIIPVYFDYSQRNINLNYQRLDIL 122 Query: 131 TISAAEQCD-ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 + +QC+ I L P T + + K D NC + + SE K+ +++ N Sbjct: 123 IKESQKQCNRIAKLEIDEPITFNDMVNKLNDFNCNFIAYEHQDLSE--WNKIKNNSNLNN 180 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ ++GPEGG+ +E L + L L IL+++TA++ +++ Sbjct: 181 ISYIVGPEGGFSGKEINELKNKCIF--LKLTNTILKTETASIYLASIL 226 >gi|325969870|ref|YP_004246061.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] gi|324025108|gb|ADY11867.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] Length = 263 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 36/262 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 L R F PL ++ +GK S YL VLR++ G IL +G+ ++L ++ + Sbjct: 6 LPRSFDGEPL-LELEGKES----QYLTRVLRLQIGQQILGLDGQGRKFLLTLTEIKNQSC 60 Query: 64 SIRFK-VEYQSRSQTKQSDVQY---------IFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113 ++ K VE + +T + Y + K + + + +++ E+G + V Sbjct: 61 TLSCKLVEPGMQVETTDTLPSYQGPYPNLVLLQCLCKGKKEEQIFRQATEIGATTLALVS 120 Query: 114 TRYT---------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNC 163 +RY + DR+ A +Q + P L + WD Sbjct: 121 SRYCVTDLSDKKDKAVRARFDRLEAQIKEALQQSGSPIATNLVPQVLDLRDVPSWWDGQG 180 Query: 164 QIVFADETCGSE-----NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 +F ++ SE SL K H + V +LIGPEGG+ EE L F P+ Sbjct: 181 LAIFFHQSTRSEEQQTLTSLLKDHPLDK--PVCVLIGPEGGFSDEECTFLEKEGF-KPVV 237 Query: 219 LGPRILRSDTAAVAAMALVQAI 240 L ILRS+TA + A+A +Q + Sbjct: 238 LKTNILRSETAGIYALAAIQVL 259 >gi|330833709|ref|YP_004402534.1| hypothetical protein SSUST3_1939 [Streptococcus suis ST3] gi|329307932|gb|AEB82348.1| protein of unknown function DUF558 [Streptococcus suis ST3] Length = 248 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK+ E+GM A+ V+ + +++ AAEQ + Sbjct: 84 KGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKLCKKAEKLEKIAQGAAEQSKRNRI 143 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGP 196 P + ++FL L +D QI+ A E E N ++ L + +V +++GP Sbjct: 144 PAVRLFEKKVDFLAQLAGFD---QIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGP 200 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG EE V LGPRILR++TA + A++ + Sbjct: 201 EGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSAI 240 >gi|332358374|gb|EGJ36199.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK49] Length = 250 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84 D ++ V+R+KEGD + L+F+ DG + +++ V + +E + + + VQ Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFD--DG--MKRLARVLDPSQQSLEILEELADNTELPVQV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K ++L+++ QK E+G I ++ + +++ AAE Sbjct: 76 TIASGFPKGDKLEFITQKVTELGASGIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135 Query: 137 QCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAI 192 Q +P I + +FL D + IV +E+ + S + A++ + V Sbjct: 136 QSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKAGESAALVRALSGLEAGAKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG EE V+ LGPRILR++TA + A+ V + Sbjct: 196 IFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLS 243 >gi|315147638|gb|EFT91654.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4244] Length = 245 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81 K + + YH++ V+RM D L+F K + S+ FK E K+ Sbjct: 12 KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFK-EISKEEMDKELP 70 Query: 82 VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132 ++ + P K ++L++++QK E+G P T + H R++ Sbjct: 71 IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188 AAEQ P + + ++ +D ++ A E + +L + Sbjct: 130 EAAEQSHRQQTPNVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237 >gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 [Thermomonospora curvata DSM 43183] gi|268312416|gb|ACY98790.1| protein of unknown function DUF558 [Thermomonospora curvata DSM 43183] Length = 244 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 32/237 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY--QSRSQTKQSDVQ 83 G + + V R++ G+ + L +G ++ V R +E + R Q + Sbjct: 22 GPEGRHAVTVRRLRPGERVDLTDGDGLLAECVVAAVAGKDRLVLEVLARHRHQPPSPRLV 81 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAAEQ 137 + + K R + ++ E G+ I P +TR+ + + R RT AA+Q Sbjct: 82 VVQALPKGERGELAVETMTEAGVDEIVPWQAARCVTRWRPDRMDKALGRWRTTAREAAKQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI----- 192 LP I P T E + + + LH A +P A+ Sbjct: 142 SRRSRLPQIPPLATTEQVAARLAGAARAIV-------------LHEAATVPLRAVDLPSE 188 Query: 193 -----LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG EE V + LGP +LR+ TA VAA A++ + G W Sbjct: 189 GEIIAVVGPEGGITDEELACFAEAGAVA-VRLGPTVLRTSTAGVAAAAILLSATGRW 244 >gi|312864025|ref|ZP_07724261.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis F0396] gi|322517605|ref|ZP_08070473.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|311100438|gb|EFQ58645.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis F0396] gi|322123770|gb|EFX95348.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 247 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 16/233 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 P+ IK + D ++ +V+R+ E D ++L ++L++++ + +E + Sbjct: 13 PVIIKDK-----DTVKHMFNVMRLAEDDQVVLVFEDGIKYLARVTDRENHVLEVIEVLNE 67 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVR 128 + V K ++L+ + QK+ E+G AI V+ + D++ Sbjct: 68 NVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWGFPADWSVVKWDGKKLAKKEDKLD 127 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI 187 + AAEQ +P + L D+ +I A E L L +AH+ Sbjct: 128 KIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELATLARELAHV 187 Query: 188 PN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + GPEGG E + V + LGPRI+R++TA + A++ V Sbjct: 188 ESGQKILFIFGPEGGISPSEIDAFEEAGGVK-VGLGPRIMRTETAPLYALSSV 239 >gi|167895917|ref|ZP_02483319.1| hypothetical protein Bpse7_19396 [Burkholderia pseudomallei 7894] Length = 193 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 13/154 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114 R + + +++ Y + + +++D++I+K+VE+G+ A+ P V+ Sbjct: 75 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 133 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 + + R ++ EQC LP I P Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP 167 >gi|322388771|ref|ZP_08062368.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC 700779] gi|321140390|gb|EFX35898.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC 700779] Length = 247 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNLV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAHIPNVAILI---GPEGG 199 P I L +D +IV A E E S + A+A + A L+ GPEGG Sbjct: 143 PSITLFEKKADFLAQFDQFDRIVVAYEESAKEGESAALIQAVAGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSAISVLL 243 >gi|184155285|ref|YP_001843625.1| hypothetical protein LAF_0809 [Lactobacillus fermentum IFO 3956] gi|183226629|dbj|BAG27145.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 249 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATL-LDPATAE 59 Query: 67 FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 KVE Q + ++ + P + + ++QK+ E+G I R V Sbjct: 60 VKVE-QDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175 Q ++R++ +AAEQ +P + L+ LL + + ++V +E+ G Sbjct: 119 QRQGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGER 178 Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + ++ + GPEGG E ET+ + V LGPRILR++TA + M Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237 Query: 235 ALV 237 A V Sbjct: 238 AAV 240 >gi|322386664|ref|ZP_08060289.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269337|gb|EFX52272.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC 51100] Length = 247 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 24/241 (9%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQ 72 PL +K + D ++ V+R+KEGD + L+F+ DG + ++++V + + +E + Sbjct: 13 PLVVKDK-----DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLAHVLEPSQQSLEILE 63 Query: 73 SRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNM 124 + + VQ + K ++L+++ QK+ E+G AI ++ + Sbjct: 64 ELADNTELPVQVTIASGFPKGDKLEFITQKATELGANAIWAFPADWSVAKWDSKKLAKKS 123 Query: 125 DRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +++ AAEQ +P + T +FL D + +V +E+ + + A Sbjct: 124 EKLEKIAQGAAEQSKRNMIPEVRLFDTKADFLAVLADFDRIVVAYEESAKEGETAALVQA 183 Query: 184 IAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + + + GPEGG +E V+ LGPRILR++TA + A+ V + Sbjct: 184 VKGLDKGDKLLFIFGPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVM 242 Query: 241 C 241 Sbjct: 243 L 243 >gi|77409131|ref|ZP_00785845.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae COH1] gi|77172259|gb|EAO75414.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae COH1] Length = 246 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 21/226 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85 D ++ +V+R+ E D ++L + L+K+ V S RF++ + S + I Sbjct: 20 DTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKV--VDSSAHRFQILEELDSNVEMPVQVTI 77 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQC 138 S K ++LD++ QK+ E+G AI V+ + D++ + AAEQ Sbjct: 78 ASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQS 137 Query: 139 DILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVA 191 LP + L +D +I A E E + + L + + Sbjct: 138 KRNRLPQVRLFEKKADFQAELAGFD---KIFIAYEESAKEGEMSALAQNLQTVKAGDKLL 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG +E + + + LGPRI+R++TA + A++++ Sbjct: 195 FIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 239 >gi|315608164|ref|ZP_07883156.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315250133|gb|EFU30130.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 244 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/213 (21%), Positives = 103/213 (48%), Gaps = 12/213 (5%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQ-SRSQTKQSDVQYIFSPIKT 91 VLR+K GD + L +G + ++++ GK ++++ + + T + + +P K Sbjct: 28 RVLRLKAGDEMFLMDGVGTFFRAEVTVAAGKHCMYEIKDRFPQHPTWRGHIHLAIAPTKM 87 Query: 92 -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 R+++M++K+ E+G I + ++++ DRV +SA +Q P + Sbjct: 88 MERMEWMVEKATEVGFDEISFLGCKFSERKVLRADRVEKIVVSAMKQSRKAWKPVVNTMC 147 Query: 151 TL-EFLL-----KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + EF+ + + +C F + SE +++ ++ +L+GPEG + +E Sbjct: 148 SFGEFMAVEHPGRKYICHCYEEFPKKDFFSE--IQETIDYEDNEDILVLVGPEGDFSVDE 205 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + +SLG LR++TA ++A+ + Sbjct: 206 VQLALEKGYES-VSLGRSRLRTETAGLSAVMMA 237 >gi|255693403|ref|ZP_05417078.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM 17565] gi|260620787|gb|EEX43658.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM 17565] Length = 232 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR+ GD I L +GK + ++I+ ++ Q Sbjct: 9 IQKSNELPDEEAQHCIRVLRLNIGDEITLTDGKGNFYKAEITAATNKRCLVAIKETVFQE 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWPCHLHIGMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISA 128 Query: 135 AEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T + F+ + + I E G + L+ + + +L Sbjct: 129 IKQSLKARLPKLNEMTDFDKFITREFKGQKFIAHCYE--GDKPLLKNILKPGE--DALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + EE + FV P+SLG LR++TAA+AA Sbjct: 185 IGPEGDFSEEEVKKAIEQGFV-PISLGKSRLRTETAALAA 223 >gi|218129752|ref|ZP_03458556.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697] gi|317475901|ref|ZP_07935157.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|217987862|gb|EEC54187.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697] gi|316907934|gb|EFV29632.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 232 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I++ + ++ + VLR++ GD + L +GK + ++IS ++ QT Sbjct: 9 IQSHAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNLLETIPQT 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERIAKILISA 128 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T +F+ + ++ I E G + L+ + + + +L Sbjct: 129 IKQSLKARLPQLNEMTDFNKFISQPFNGRKFIAHCYE--GDKPLLKDI--VRKGEDALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + EE + F P+SLG LR++TAA+ A Sbjct: 185 IGPEGDFSEEEVKKAIENGF-EPISLGRSRLRTETAALVA 223 >gi|227544930|ref|ZP_03974979.1| protein of hypothetical function DUF558 [Lactobacillus reuteri CF48-3A] gi|300910042|ref|ZP_07127502.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227185097|gb|EEI65168.1| protein of hypothetical function DUF558 [Lactobacillus reuteri CF48-3A] gi|300892690|gb|EFK86050.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 246 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 12/219 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87 H+L V+R + G ++ L +L+ +S + K+ + + S+ S Sbjct: 22 HHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTATLKINQKLDADSELPVSVTLACGI 81 Query: 88 PIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 P + + ++QK+ E+G A R + ++R++ SAAEQ Sbjct: 82 PKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRN 141 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198 +P + L+ LL ++ +IV +E+ G ++L ++ +A+ ++ + GPEG Sbjct: 142 KIPQVEYSANLDQLLADYPATKRIVAWEESAKQGETSALAQQFNALNLGDSLLAIFGPEG 201 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G E ++ V LGPRILR++TA + MA + Sbjct: 202 GLTENEIAKMNEAGVVAA-GLGPRILRTETAPLYFMAAI 239 >gi|260662210|ref|ZP_05863106.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN] gi|260553593|gb|EEX26485.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN] Length = 249 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATL-LDPATAE 59 Query: 67 FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 KVE Q + ++ + P + + ++QK+ E+G I R V Sbjct: 60 VKVE-QDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175 Q ++R++ +AAEQ +P + L+ LL + + ++V +E+ G Sbjct: 119 QRQGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTIFSFDHRVVAWEESAKQGER 178 Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + ++ + GPEGG E ET+ + V LGPRILR++TA + M Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237 Query: 235 ALV 237 A V Sbjct: 238 AAV 240 >gi|311113633|ref|YP_003984855.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310945127|gb|ADP41421.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 267 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 17/234 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQ 83 +G + H+ A V R+ G+N+ L +G+ G + I S +V Q+ + S V Sbjct: 37 TGPEAHH-AKVKRLAIGENLDLADGQ-GHRIHGIVSAISSKGLEVTVQNLDKDDNSLSVS 94 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K NR I+ E+G+ ++ P I R+ + T+SAA + Sbjct: 95 LVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNTVSAAAKQ 154 Query: 139 D----ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----V 190 I T+ +Y L ++ V+ +E E L I + P+ + Sbjct: 155 SRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYSPDNPTRI 214 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 IL+GPEGG E E L + LG ILR+ TA AA+ + + G W Sbjct: 215 YILVGPEGGITEREIE-LFTRAGAHKALLGTEILRASTAGAAALCTINVVLGRW 267 >gi|306829961|ref|ZP_07463148.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304427972|gb|EFM31065.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 247 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 18/223 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88 ++ V+R+KEGD I L + L+++ V ++ +F++ Q + + VQ + Sbjct: 23 KHMFQVMRLKEGDEITLVFDDGIKRLARVLDV-ETRQFEL-VQELADNVELPVQVTTASG 80 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 81 FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197 +P + L +D IV A E E ++ + + V + GPE Sbjct: 141 LVPSVKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAALIQAVSGLEKGSKVLFIFGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALV 237 GG E ++ + V LGPRILR++TA AV+A++++ Sbjct: 201 GGLSPAEIKSFEAKGAVLA-GLGPRILRAETAPLYAVSALSVL 242 >gi|33861225|ref|NP_892786.1| hypothetical protein PMM0668 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639957|emb|CAE19127.1| Conserved hypothetical protein 46 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 257 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 36/261 (13%) Query: 7 LKRLFVDFPLCIKTQG---KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L RLF+ I + K + ++ Y+ V+R+K G I + NG+ W K Sbjct: 4 LTRLFMQNERIINNKNNDLKLTNNEARYINKVMRIKIGKEIFITNGEGSLW--------K 55 Query: 64 SIRFKVEYQSRS--------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV--- 112 +I + Y + Q K+ + I I N ++ +++ E+G+ I+P+ Sbjct: 56 AINLEDNYIKINDINNPYLFQEKEKILLGIAVVIPKNGVEDILKMCTEIGIDFIQPLYSD 115 Query: 113 --ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFL--LKNWDHNCQIVF 167 + +YT N + R + A EQC+ L P I L +++ L+N D V Sbjct: 116 RQVKKYT-NFSNKLIRWNSIVNEAVEQCERLWRPSILSGINLFDWINSLENKDIISVSVT 174 Query: 168 ADETCGSENS-LEKLHAIAHIPNVAI--LIGPEGGYHSEEKETL--HSLPFVTPLSLGPR 222 D++ + N L+K ++ + +IGPEGG+ E E + + FV L Sbjct: 175 RDDSTDNLNHWLKKKQSVLDKKGGVLWNVIGPEGGWSQGEIEFFIKNKIAFV---KLSES 231 Query: 223 ILRSDTAAVAAMALVQAICGD 243 ILR+ TA V A +++ D Sbjct: 232 ILRTSTATVNATSILSQWRND 252 >gi|216263941|ref|ZP_03435935.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] gi|215979985|gb|EEC20807.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] Length = 243 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 32/232 (13%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNILL---KDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I + ++ NT R A +Q Sbjct: 81 FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHQSGML-----------LSKNESFDNFSKIG 189 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 I+IGPEG + + E F T + +LR+DTA + ++A + + D Sbjct: 190 IIIGPEGCFSNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240 >gi|325955335|ref|YP_004238995.1| ribosomal RNA small subunit methyltransferase E [Weeksella virosa DSM 16922] gi|323437953|gb|ADX68417.1| Ribosomal RNA small subunit methyltransferase E [Weeksella virosa DSM 16922] Length = 237 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 21/227 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-----EYQSRSQTKQSD 81 ++ H+ VLR KEGD + + NG+ +IS + K KV E Q Q K Sbjct: 18 EESHHFTKVLRGKEGDIVYITNGEGTLAKCEISQLSKK---KVEANILEIQENFQQKPYY 74 Query: 82 VQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 + +P KT RL++ ++K+ E+G+ I + T +++ + ++R+ +A +Q Sbjct: 75 LHVAIAPTKTMERLEFFLEKATEIGIDEITFLQTFHSERRNIKIERIEKIIQAACKQSLK 134 Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLE--KLHAIAHIPNVAILIGPE 197 P + +F+ +++ +++ C + E K + + ++IGPE Sbjct: 135 AYTPKVNSLMKFHDFIDQDYQEFSKVI---AHCRDDWDRENFKTYLSTQPSKIILMIGPE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G + +EE + F +SLG + R++TAA+ A+ V DW Sbjct: 192 GDFSAEEITSALQKNF-RGVSLGTQRFRTETAALQAVFAV-----DW 232 >gi|224538561|ref|ZP_03679100.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus DSM 14838] gi|224519829|gb|EEF88934.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus DSM 14838] Length = 244 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75 I+T+ + ++ + VLR+ GD I L +GK + ++IS + + +E + Sbjct: 21 IQTRAELPEEEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISAATNKRCMVNILETIYQE 80 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 81 PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 140 Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T +F+ + + I E G + L+ + + +L Sbjct: 141 IKQSLKARLPQLNEMTDFNKFITQPFKGQKFIAHCYE--GEKPLLKDVFRKGE--DALVL 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 IGPEG + +E + F TP+SLG LR++TAA+ A Sbjct: 197 IGPEGDFSEKEVQKAIENGF-TPISLGKSRLRTETAALVA 235 >gi|157363096|ref|YP_001469863.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga lettingae TMO] gi|157313700|gb|ABV32799.1| protein of unknown function DUF558 [Thermotoga lettingae TMO] Length = 226 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 21/230 (9%) Query: 22 GKASGD----QYHYLAH--VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 GK +GD H H V+R+ G + + +GK + ++ +GK + K ++ Sbjct: 7 GKQTGDFVILDEHESRHLRVIRVSVGQKLFVTDGKGNLYNCELIELGK-LESKAVVRNVE 65 Query: 76 QT---KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI 132 QT K S + + RL ++++K+VE+G+ + T+ ++ +++R Sbjct: 66 QTEINKLSKITLCIASQNWERLRFLLEKAVELGVDELIIYKTKRSKLYIDKEEKIRLIIR 125 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA+Q P + + FL + + + V ++ G ++ ++ I Sbjct: 126 DAAKQSVRYLFPELRIFRDMSFL---QNESMKTVVLHQS-GRAAKIDDFKG-----SLRI 176 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 ++GPEG + SEE L + T L+LG +ILR +TAA+ A L + G Sbjct: 177 VVGPEGDFESEEINQLSQVG--TFLNLGKKILRFETAAILAAGLSSFLNG 224 >gi|229916343|ref|YP_002884989.1| hypothetical protein EAT1b_0613 [Exiguobacterium sp. AT1b] gi|229467772|gb|ACQ69544.1| protein of unknown function DUF558 [Exiguobacterium sp. AT1b] Length = 254 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 18/225 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQY 84 D H++ VLR G ++L +G E+ ++ + K SR T + +V Sbjct: 21 DVVHHIGTVLRQGPGYEMVLLDGTGVEYACVVTSLEKKSGEAKVMSSRQATTELPIEVTL 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138 ++ K ++++ + QK+ E+G+ + R V + ++R++ AAEQ Sbjct: 81 AYALPKGDKVELVAQKATELGVHHLLLFESTRSVAKWDGKKAPKKVERIQKIMQEAAEQS 140 Query: 139 DILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAI 192 +P P L+ + +D +V A E E + L + V + Sbjct: 141 YRAVVPTCTYISPKELQQKIDGYDA---VVIAYEESAKEGEQSAFAQLLTQLKPKQRVLV 197 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG+ E + T + GPRILRS+TA + A++ + Sbjct: 198 ITGPEGGFDVNEINQW-TQAGATACAFGPRILRSETAPLYALSAI 241 >gi|118618898|ref|YP_907230.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium ulcerans Agy99] gi|118571008|gb|ABL05759.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 253 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 35/240 (14%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-Y 84 GD+ + A V R++ G+ ++L +G G+ R VE+ +R +Q + Sbjct: 22 GDEGFHAATVRRIRPGEQLVLGDG-----------AGELARCVVEHAARDGLTARVLQRW 70 Query: 85 IFSPI-----------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRV 127 +P+ K+ R + ++ + E G A R V + R Sbjct: 71 SVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADKGLRRW 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAI 184 R+ SAA Q +P + + L++ Q +V A ++ +E A+ Sbjct: 131 RSAVRSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVET--AV 188 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A ++ +++GPEGG EE + L V+ + LGP +LR+ TAA A+ + + G W Sbjct: 189 AQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTSTAAAVALGALGVLTGRW 247 >gi|312864411|ref|ZP_07724644.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415] gi|311100132|gb|EFQ58343.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415] Length = 248 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 30/240 (12%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQS 73 PL IK + D ++ V+R+K D + L+F+ DG I + + + + Sbjct: 13 PLTIKDK-----DTLKHMFQVMRLKADDKVTLVFD--DG-----IKRLARVLNVDSQTFE 60 Query: 74 RSQTKQSDVQYIFSPI------KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTH 121 Q + +V+ S K ++LD++ QK+ E+G AI V+ + Sbjct: 61 ILQGLEDNVELPVSVTIASGFPKGDKLDWLTQKATELGADAIWAFPADWSVVKWDGKKLA 120 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 D++ + AA+Q LP + + LLK +I A E L L Sbjct: 121 KKEDKLAKIALGAAQQSKRNRLPQVKLFEKKKDLLKQLPDFDKIFLAYEESAKAGELSTL 180 Query: 182 HAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + GPEGG +E + P+ LGPRI+R++TA + A++ V Sbjct: 181 ASSLRQSQSGDKLLFIFGPEGGISPQELAEFEKSGAI-PVGLGPRIMRAETAPLYALSAV 239 >gi|324994345|gb|EGC26259.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK678] Length = 250 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 11/225 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+K GD ++L + L+++ + VE + + V Sbjct: 20 DTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSLEIVEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G AI R V + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGASAIWAFPADRSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196 +P I +FL D + IV +E+ + + A++ + V + GP Sbjct: 140 NLIPEIRLFDKKADFLAALADFDRIIVAYEESAKEGETAALVRALSGLEAGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 EGG +E V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|325262826|ref|ZP_08129562.1| RNA methyltransferase, RsmE family [Clostridium sp. D5] gi|324031920|gb|EGB93199.1| RNA methyltransferase, RsmE family [Clostridium sp. D5] Length = 245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 10/222 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83 G +++ +VLRMK G+ + +G E+L +I Y ++ ++ + + Sbjct: 19 GGPDVNHMKNVLRMKPGEKAEISDGAGIEYLCEIDRYEEDAVILRILSSAGEPAELPSKI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 ++F + K+++++ +IQK+VE+G+ I PV T + +R + +SAA+ Sbjct: 79 FLFQGLPKSDKMELIIQKAVELGVHEIIPVATNRAVVKLDEKKAAKKTERWNSIALSAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVAILIG 195 QC +P + L+ D ++ E G E + + +I +V I IG Sbjct: 139 QCGRSIIPQVAQVKNFGGALEYADGLDVVLIPYELAKGMEETKRIISSIEPGKSVGIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ EE + + + P++LG RILR++TA ++++ Sbjct: 199 PEGGFEEEEIQKAMGMGAL-PVTLGRRILRTETAGFTILSVL 239 >gi|22538104|ref|NP_688955.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae 2603V/R] gi|25011993|ref|NP_736388.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae NEM316] gi|76799724|ref|ZP_00781818.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] gi|77412896|ref|ZP_00789100.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 515] gi|22535010|gb|AAN00828.1|AE014280_20 conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 2603V/R] gi|24413536|emb|CAD47614.1| Unknown [Streptococcus agalactiae NEM316] gi|76584921|gb|EAO61585.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] gi|77161036|gb|EAO72143.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 515] Length = 246 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 23/227 (10%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85 D ++ +V+R+ E D ++L + L+K+ V S RF++ + + VQ Sbjct: 20 DTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKV--VDSSAHRFQI-LEELDNNVEMPVQVT 76 Query: 86 FSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQ 137 + K ++LD++ QK+ E+G AI V+ + D++ + AAEQ Sbjct: 77 IASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQ 136 Query: 138 CDILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNV 190 LP + L +D +I A E E L + L + + Sbjct: 137 SKRNRLPQVRLFEKKADFQAELAGFD---KIFIAYEESAKEGELSALAQNLQTVKAGDKL 193 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG +E + + + LGPRI+R++TA + A++++ Sbjct: 194 LFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 239 >gi|307709666|ref|ZP_07646118.1| RNA methyltransferase family protein [Streptococcus mitis SK564] gi|307619564|gb|EFN98688.1| RNA methyltransferase family protein [Streptococcus mitis SK564] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G A+ V + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPAVWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNMV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L +D IV A E E L A+A + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAALLQAVAGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243 >gi|300741540|ref|ZP_07071561.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567] gi|300380725|gb|EFJ77287.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567] Length = 255 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 17/234 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQ 83 +G + H+ A V R+ G+N+ L +G+ G + I S +V Q+ + S V Sbjct: 25 TGPEAHH-AKVKRLAIGENLDLADGQ-GHRIHGIVSAISSKGLEVTVQNLDKDDNSLSVS 82 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K NR I+ E+G+ ++ P I R+ + T+SAA + Sbjct: 83 LVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNTVSAAAKQ 142 Query: 139 D----ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----V 190 I T+ +Y L ++ V+ +E E L I + P+ + Sbjct: 143 SRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYSPDNPTRI 202 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 IL+GPEGG E E L + LG ILR+ TA AA+ + + G W Sbjct: 203 YILVGPEGGITEREIE-LFTRAGAHKALLGTEILRASTAGAAALCTINVVLGRW 255 >gi|313683427|ref|YP_004061165.1| hypothetical protein Sulku_2305 [Sulfuricurvum kujiense DSM 16994] gi|313156287|gb|ADR34965.1| protein of unknown function DUF558 [Sulfuricurvum kujiense DSM 16994] Length = 222 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 20/214 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKD---GEWLSKISYV-GKSIRFKVEYQSRSQTKQS 80 SGD Y YL V R K GD ++ F ++ E+ ++ G+ F ++ + ++ + Sbjct: 17 SGDDYKYLIKVRRHKAGD-LIAFRSRERLSEEYRYRLERTDGRCAYFSLQSHHHAPSESN 75 Query: 81 DVQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 +I + + ++ + E+G+ I + R + QN + +R + S+ QC Sbjct: 76 HRLHIGWCLVDPKTIEKTLPMLTELGVSKITFIHCRRSQQNFRLDFERYKRIMESSIMQC 135 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +L + + LK + + F E GS+ S+E ++IG EG Sbjct: 136 GRTSLIELSESPNMSTFLKEHNDAVVLDFGGEVLGSDESIE-----------TVVIGCEG 184 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G+ E++ + L P ILRS+TAAVA Sbjct: 185 GFDESERKVFSN--HRIRLFPSPMILRSETAAVA 216 >gi|330998339|ref|ZP_08322163.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT 11841] gi|329568445|gb|EGG50250.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT 11841] Length = 254 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 30/236 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQ 83 D+ + VLR++ GD I L +GK + ++I+ GK FKV E + + Sbjct: 20 ADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLFKVLEAVPHPKEWSGHLH 79 Query: 84 YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K +R++++ +K+ E+G + + RY++ +R+ +SA +Q Sbjct: 80 LALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTERIDKILVSAMKQSHKAR 139 Query: 143 LPFI-----------YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK---------LH 182 P + P +F+ +D AD ++ S +K L Sbjct: 140 KPLLNGMEDFKRFVDRPFAGQKFIAHCYDE------ADVAGVAKASEDKAMDGGKPFLLD 193 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + +L+GPEG + E + F + +SLG LR++TA + A+ L+ Sbjct: 194 ELDTGQDALVLVGPEGDFSINEVRLAQAHGFRS-VSLGRSRLRTETAGLVAVHLMH 248 >gi|288904368|ref|YP_003429589.1| hypothetical protein GALLO_0147 [Streptococcus gallolyticus UCN34] gi|306830400|ref|ZP_07463570.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977364|ref|YP_004287080.1| ribosomal RNA small subunit methyltransferase E [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731093|emb|CBI12639.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427425|gb|EFM30527.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177292|emb|CBZ47336.1| ribosomal RNA small subunit methyltransferase E [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 247 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQYI 85 D ++ +V+R+ E D ++L + L+K+ + RF++ + S + +V Sbjct: 20 DTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEH-RFEIIEELDSNVELPVEVTIA 78 Query: 86 FSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 K ++L+++ QK E+GM A V+ + D++ T+ AAEQ Sbjct: 79 AGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKLAKKADKLAKITLGAAEQSK 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195 ++P + L + +I A E E +L + + + G Sbjct: 139 RNSIPEVTLFEKKAAFLAELEQFDRIFIAYEESAKEGETAVLARELSQMKAGEKILFIFG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG EE ET S + + LGPRI+R++TA + A+A V Sbjct: 199 PEGGISPEEIETFESKGGLK-IGLGPRIMRAETAPLYALASV 239 >gi|304385087|ref|ZP_07367433.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|304329281|gb|EFL96501.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 19/236 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ L ++ + S H+L V+R + G+ I + WLS++ Sbjct: 1 MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQRVWLSQLLDNAAPAS 60 Query: 67 FK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K V+ ++S +V K ++ + +I++ EMG + RY+ + Sbjct: 61 LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + R +AAEQ +P + + + + H + A E E Sbjct: 121 IDRKLQRFEEIAKAAAEQSHRQMIPTVEIISFADLVNSPVQHR---MVAYEESAKEGEFA 177 Query: 180 KLHAIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + N A + GPEGG EE ++ + F T LGPRILR+++A Sbjct: 178 NFKRV--LSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESA 230 >gi|224534422|ref|ZP_03675000.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224514524|gb|EEF84840.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 243 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 42/237 (17%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E +S+I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRLKKGDKLNILL---KDKELRVSEIVNIGSNFIKFATNKIDKIEKNNFEISM 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138 S +K ++D ++++ VE+G+ I + ++ N +T S A +Q Sbjct: 81 FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H + +L K + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHQSGV-----------TLSKNENFDNFSKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 I+IGPEG + + E ++ + + F TP +LR+DTA + ++A + + D Sbjct: 190 IIIGPEGCFSNSEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLACFKVLLED 240 >gi|258508566|ref|YP_003171317.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148493|emb|CAR87466.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|259649873|dbj|BAI42035.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 242 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 V+ + K ++ ++++QK+ E+G I ++ + MDR+ T +AA Sbjct: 76 VEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHA-IAHIPNVAI 192 EQ + P T+ L + D ++V +E+ + A + H ++ + Sbjct: 136 EQSH----RNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVSALVPHPASLCV 191 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GPEGG E L + F TP LGPRILR++TA Sbjct: 192 VFGPEGGISPAELALLQARGF-TPAGLGPRILRTETA 227 >gi|241890108|ref|ZP_04777406.1| ribosomal RNA small subunit methyltransferase E [Gemella haemolysans ATCC 10379] gi|241863730|gb|EER68114.1| ribosomal RNA small subunit methyltransferase E [Gemella haemolysans ATCC 10379] Length = 249 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 15/236 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64 +++ F++ L +++ + S D +++ ++R K D + + + +++ I + V K Sbjct: 1 MQQYFINEDLNVESTYELSKDDSNHIVRIMRKKIEDKVYVVFNNEIKYICTIVDNNVDKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + E + + + P+K ++++Y++QK E+G+ I R + Sbjct: 61 LITPYEQVIGTNELSTKITVAIPPLKNDKIEYLMQKLTELGVSNIVLFNSERNIAKIKKD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSE 175 ++R AAEQ +P I +L+ L+ + +D + + E+ E Sbjct: 121 KVDSKLNRWNKIVKEAAEQSKRNVIPDITYVDSLKDLIVFSEKFDSKV-VAYEKESVNEE 179 Query: 176 NSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 N K LH+ V + G EGG +E + L F + LG RILR++TA Sbjct: 180 NINLKNLLHSDLSNKEVIAVFGSEGGLSEQEVDFLTENKF-DVIGLGKRILRAETA 234 >gi|163781828|ref|ZP_02176828.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1] gi|159883048|gb|EDP76552.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1] Length = 233 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 14/161 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVIT----RYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 I+ + ++QK+ E+G + P+IT R + MDR + + A +Q Sbjct: 81 IELKTFETIVQKATELGAAELVPLITERSFRRREVILKKMDRWKKVSKEAMKQSGRTYEL 140 Query: 145 FIYPPTTLEFLLKNWDHNCQI--VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 I P LE L D N + + + GS ++ + +V++++GPEGG+ Sbjct: 141 SIREPALLEDLEPTSDLNILLDNFYEGKPIGS-------LELSSVESVSVVVGPEGGFRR 193 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EE E L S F++ + L P +LR+DTAA + ++ + G Sbjct: 194 EEGEHLRSKGFLS-VKLEPHVLRADTAATVGVGIIMNLAGS 233 >gi|289705009|ref|ZP_06501422.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58] gi|289558268|gb|EFD51546.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58] Length = 253 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 25/237 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 G + + A +R+ G+ ++L +G G L+ G S+R + + T Sbjct: 25 GGPEARHAAAAMRLAPGEAVILADGSGTLGHGTVLAAAPD-GVSVRLDAVAEEPAPTPA- 82 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAA 135 + + + K +R +Q +VE+G+ A+ P I R+ + T AA Sbjct: 83 -LVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWADTARAA 141 Query: 136 EQCDILT-LPFI---YPPTTLEFLLKNWDHNCQIVFA---DETCG-SENSLEKLHAIAHI 187 + +P + T + L+++ D ++V D G S E+L A A I Sbjct: 142 AKQARRARVPAVRDHVSGTAVAGLVRD-DDGGRLVLVLHEDAERGVSSVPTERLSAAAEI 200 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A+++GPEGG E E + V P+ LGP +LR+ TA AA+A++Q G W Sbjct: 201 ---AVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253 >gi|199599340|ref|ZP_03212738.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001] gi|199589779|gb|EDY97887.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001] Length = 242 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 V+ + K ++ ++++QK+ E+G I ++ + MDR+ T +AA Sbjct: 76 VEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHA-IAHIPNVAI 192 EQ + P T+ L + D ++V +E+ + A + H ++ + Sbjct: 136 EQSH----RNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVSALVPHPASLCV 191 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GPEGG E L + F TP LGPRILR++TA Sbjct: 192 VFGPEGGISPAELALLQARGF-TPAGLGPRILRTETA 227 >gi|323340773|ref|ZP_08081025.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091896|gb|EFZ34516.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 250 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 15/219 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S D Y + V+RMK G L + ++ + + + V ++ Q ++ Sbjct: 18 SEDVYKHAVVVMRMKAGSKFELVTPDKVVHVMELVTIDSAKKQAVAHECERFEHQVELPV 77 Query: 85 IFSPI----KTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISA 134 + + K ++ D ++ K+ E+G+ I + R+ Q ++R++ SA Sbjct: 78 EATIVCGLPKNDKTDLIVMKATELGVSKIVFFAGDWSVARWAKQKQAKKLERLQKIAKSA 137 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAI---AHIPNV 190 AEQ T+P + LE LL + D + + G + L K+ + V Sbjct: 138 AEQSHRTTIPEVSYLDGLEDLLPDEDTVGLCAYEESAKAGEKGMLVKVFDVLKTGEKKKV 197 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GPEGG +E E L F + LGPRI+R++TA Sbjct: 198 TAVFGPEGGISPKEVELLKKKGF-SFAGLGPRIMRAETA 235 >gi|281420413|ref|ZP_06251412.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205] gi|281405558|gb|EFB36238.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205] Length = 251 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/234 (20%), Positives = 109/234 (46%), Gaps = 20/234 (8%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQT 77 TQ + ++ + VLR++ GD + L +GK + +++S K ++V E + Sbjct: 14 TQTELPQEEATHALRVLRIQTGDELFLMDGKGVFYRAEVSLATNKRCIYEVKEVMPQQPA 73 Query: 78 KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 + + +P K +R+++M +K+ E+G I + ++++ +DR+ +SA + Sbjct: 74 WRGHIHLAIAPTKMMDRIEWMAEKATEIGFDEISFLNCKFSERKVIRIDRIDKIVVSAVK 133 Query: 137 QCDILTLPFI-----------YPPTTLEFLLKNWDH-NCQIVFAD--ETCGSENSLEKLH 182 Q P + P +F+ ++ + FA+ ++C +++S Sbjct: 134 QSHKAWKPVVNELQNFKDFITAPRNGRKFICHCYEEIEKKDFFAEISKSCPADDSAGA-- 191 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A ++ +L+GPEG + +E + + +SLG LR++TA + A+ + Sbjct: 192 AQEGTDDITVLVGPEGDFSIDEVRLALENGYES-VSLGTSRLRTETAGLVAVNM 244 >gi|329956990|ref|ZP_08297558.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056] gi|328523747|gb|EGF50839.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056] Length = 232 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 9/208 (4%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91 VLR++ GD + L +GK + ++IS + + +E ++ + +P K Sbjct: 25 RVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNILETTPQAPLWSGYLHIAMAPTKN 84 Query: 92 -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 +R ++ +K+ E+G + + R+++ +R+ +SA +Q LP + T Sbjct: 85 MDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSAIKQSLKARLPRLNEMT 144 Query: 151 TL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 +F+ ++++ I E G + L+ + + + +LIGPEG + EE + Sbjct: 145 DFNKFISQSFNGRKFIAHCYE--GEKPLLKDI--VRKGEDALVLIGPEGDFSEEEVKKAI 200 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237 F P+SLG LR++TAA+ A +V Sbjct: 201 ENGF-EPISLGRSRLRTETAALVACHIV 227 >gi|226227302|ref|YP_002761408.1| hypothetical protein GAU_1896 [Gemmatimonas aurantiaca T-27] gi|226090493|dbj|BAH38938.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 240 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 13/202 (6%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK-TN 92 VLR++ G I + NG+ ++ + K+ + VE ++ P+ + Sbjct: 23 RVLRLEAGAMIGVRNGQGSIGAGQLVRLSKT-QAHVEITEAVSVSPLPAVHLLVPVADRD 81 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD------RVRTYTISAAEQCDILTLPFI 146 R+ ++ +K+ E+G + RPV+ R +++ + +VR A Q + LP Sbjct: 82 RMLWLAEKAAELGATSWRPVLWRRSRSVSPRGEGVNFQAKVRARMEGALAQSEGAWLPQP 141 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 +P LE + +IV + E L A P V I +GPEGG ++E Sbjct: 142 FPEANLERAVLAAPAGRRIVLDPD---GEPLTGALGAPLTAP-VVIAVGPEGGLEADEIA 197 Query: 207 TLHSLPFVTPLSLGPRILRSDT 228 L F SLGP ILR +T Sbjct: 198 DLEQAGFQR-RSLGPTILRFET 218 >gi|224024059|ref|ZP_03642425.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM 18228] gi|224017281|gb|EEF75293.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM 18228] Length = 232 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 9/212 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84 ++ + VLR+ GD ++L +GK + + IS K + K+ E + + + Sbjct: 18 EEAGHCLRVLRLGMGDEVMLTDGKGCFYKAVISAATNKRCQVKILETIPQEPFWKGHLHL 77 Query: 85 IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +P K +R++++ +K+ E+G + + R+++ +RV +SA +Q Sbjct: 78 ALAPTKNMDRIEWLAEKATEIGFDELSFLNCRFSERKVIKTERVEKIVVSAVKQSLKARK 137 Query: 144 PFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + T ++F+ +++ I E E L K + + +LIGPEG + Sbjct: 138 PVVNEMTDFMKFMERDFPGQKFIAHCYE---GEKPLLK-DVLVPGEDALVLIGPEGDFSP 193 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 EE F +SLG LR++TAA+ A+ Sbjct: 194 EEVARAEEKGF-HAVSLGKSRLRTETAALVAV 224 >gi|213417363|ref|ZP_03350505.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 182 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 12/144 (8%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75 TQ D +++ VLRM G + LF+G + + ++I S KS+ +V E R Sbjct: 32 TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRV--RT 129 + + S + ++++ IQKS+E+G+ I P+ + N N R + Sbjct: 92 SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149 Query: 130 YTISAAEQCDILTLPFIYPPTTLE 153 I+A EQC +P I PP L+ Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALK 173 >gi|108800424|ref|YP_640621.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. MCS] gi|119869553|ref|YP_939505.1| hypothetical protein Mkms_3521 [Mycobacterium sp. KMS] gi|108770843|gb|ABG09565.1| protein of unknown function DUF558 [Mycobacterium sp. MCS] gi|119695642|gb|ABL92715.1| protein of unknown function DUF558 [Mycobacterium sp. KMS] Length = 248 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 18/232 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 GD + +V R + G+++ L +G + VGK + R+ T + + Sbjct: 21 GDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTARVLERRTVTPPAPAVTV 80 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY--TQNTHYNMDRVRTYTISAAEQ 137 I K++R + ++ + E G A+ + R+ + R R SAA Q Sbjct: 81 VQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAGKVDKGLRRWRAVVRSAARQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 +P + T L++ D +V + G ++ A A V + Sbjct: 141 SRRAHIPPVDGVVTTAELVRRVTAEVADGATVLVLHESATGPLTGVDLTQARA----VTL 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG EE + L + V + LGP +LR+ TAA + + + W Sbjct: 197 IVGPEGGIADEELDALTAAGAVA-VRLGPTVLRTSTAAAVGLGALGVLTPRW 247 >gi|303229102|ref|ZP_07315904.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-134-V-Col7a] gi|302516226|gb|EFL58166.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-134-V-Col7a] Length = 243 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 40/254 (15%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +K++F+ PL D H++ HV R NI I+ G R Sbjct: 1 MKKIFIPTPL--DESIVLPKDVTHHILHVFR----HNIE----------KPITVTGSDNR 44 Query: 67 ---FKVEYQSRSQTKQSDVQYIFSP------------IKTNRLDYMIQKSVEMGMGAIRP 111 +++ + + S ++YI SP +K +L++++QK+ E+ + + Sbjct: 45 CGIYQINDEINGLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYL 104 Query: 112 V-----ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI 165 V + +Y + R + A++QC LP + L +L + ++ Sbjct: 105 VPTSNCVAKYDAKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVGEPLSNVLDIESESLKL 164 Query: 166 VFADETCGS--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 V + G +++L+ +++ + ++ I IGPEGG+ +E + + ++LG I Sbjct: 165 VAYENEAGYTIKDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGGQS-VTLGHTI 223 Query: 224 LRSDTAAVAAMALV 237 LR++TAA+AA+++V Sbjct: 224 LRAETAAIAALSMV 237 >gi|317052435|ref|YP_004113551.1| hypothetical protein Selin_2275 [Desulfurispirillum indicum S5] gi|316947519|gb|ADU66995.1| protein of unknown function DUF558 [Desulfurispirillum indicum S5] Length = 243 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 29/251 (11%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----S 64 +D L + + G+ +H+L VLR GD + + + + +I+ + S Sbjct: 3 FLIDQALIGQDSCRIEGEDFHHLRRVLRKNIGDPVDILSTGKVRYRGRITAMADDSAAIS 62 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT---------R 115 + + +++ S + + + IK + ++ E+G I ++ + Sbjct: 63 LSDPIAHETESSLQ---LTIACAAIKGDAFFDNVRMFCELGAHRIVVFVSENCVVQYDEK 119 Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKN--WDHNCQIVFADETC 172 Q M R+ ++ + + ++ T P I P TT E LL + W +I+ + Sbjct: 120 RAQRKREKMQRI----VNESCKQNLRTCPPAIDPLTTFEQLLSDDQWLPRQKILCYE--- 172 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G+ + L P + ++IGPEGG E + + + +SLGPRIL++ TA VA Sbjct: 173 GAREPIASLSIDTGQP-LLLMIGPEGGISQREAQKAR-MCGIQMVSLGPRILKASTAQVA 230 Query: 233 AMALVQAICGD 243 A+++VQ GD Sbjct: 231 ALSIVQHRFGD 241 >gi|229552377|ref|ZP_04441102.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus LMS2-1] gi|258539747|ref|YP_003174246.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314243|gb|EEN80216.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus LMS2-1] gi|257151423|emb|CAR90395.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 242 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 V+ + K ++ ++++QK+ E+G I ++ + MDR+ T +AA Sbjct: 76 VEVVCGVSKGDKTEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHA-IAHIPNVAI 192 EQ + P T+ L + D ++V +E+ + A + H ++ + Sbjct: 136 EQSH----RNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVSALVPHPASLCV 191 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GPEGG E L + F TP LGPRILR++TA Sbjct: 192 VFGPEGGISPAELALLQARGF-TPAGLGPRILRTETA 227 >gi|218961073|ref|YP_001740848.1| hypothetical protein CLOAM0759 [Candidatus Cloacamonas acidaminovorans] gi|167729730|emb|CAO80642.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 233 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 6/182 (3%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 G+++H+L +V R G+ + L +G K++ + K S ++ + Sbjct: 20 GEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNSAVIEIIKIETFPFPERPFAI 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDILT 142 F+ IK + +I+K E+G+ A P++T Y+ + R + ++A +QCD Sbjct: 80 AFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVRIPSKNTTQRFKRTALAAIKQCDNPW 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP I P + + ++ I C + +K+ A+ + +IGPEGG+ Sbjct: 140 LPRINEPLSFKQAIEKIISEGWIPV---LCSEKRPAKKISALPNNIKPCFIIGPEGGFSE 196 Query: 203 EE 204 E Sbjct: 197 AE 198 >gi|239979382|ref|ZP_04701906.1| 16S rRNA m3U1498 methyltransferase [Streptomyces albus J1074] gi|291451257|ref|ZP_06590647.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074] gi|291354206|gb|EFE81108.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074] Length = 243 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSIRFKVEYQSRSQ-TKQSDVQ 83 G + + V R+ G+ ++L +G G + + +S GKS + + R + + + Sbjct: 20 GPEGRHAVSVRRLNPGEPVVLTDGAGRGAFGTVVSAEGKSTLYVAVDEVREEPAPRPRIT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + + K +R + ++ E G+ AI P IT++ + ++ + R A +Q Sbjct: 80 VVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGERGLKSLGKWRATAREAGKQ 139 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-------AIAHIP-- 188 L P + P H+ + V A G + LH A A +P Sbjct: 140 SRRLRFPEVADP-----------HSTRQVAA--LLGGADFAAVLHEEGSAPLARAALPEE 186 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG SEE LGP +LR+ TA A +AL+ G W Sbjct: 187 GSIVLVVGPEGGVSSEELAAFGEAGAGA-FRLGPSVLRTSTAGTAGVALLLGRTGRW 242 >gi|327472984|gb|EGF18411.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK408] Length = 250 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 13/226 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KE + + L + L+++ G+ +E + + V Sbjct: 20 DTAKHMFSVMRLKEDEQVTLVFDDGMKRLARVLDPGQQSLEILEEMADNTELPVRVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G GA+ ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGAGALWAFPADWSVAKWDSKKLAKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIG 195 +P + + T +FL D + IV +E+ + + A++ + V + G Sbjct: 140 NLIPEVRLFDKKT-DFLATLADFDRIIVAYEESAKEGETAALVRALSGLETGAKVLFIFG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 PEGG S+E V+ LGPRILR++TA + A+ V + Sbjct: 199 PEGGLSSDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|149918557|ref|ZP_01907046.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1] gi|149820633|gb|EDM80045.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1] Length = 241 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 24/223 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS---IRFKVEYQSRSQTKQSD 81 GD+ HYLA V R + GD++ + G G+ W +++ + + + Sbjct: 23 GDESHYLAKVRRARVGDSVEVLGGAAGQAWSARVVALERRAARVLLLAPLPPPQPPPPLR 82 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMDRVRTYTISAAEQCD 139 + + P LD + S GA R + R +Q + RV +A QC Sbjct: 83 LVLLGMPDAPAVLDSL---SAASEAGATRLALVRCARSQGRGPSPARVARVLRAAQRQCG 139 Query: 140 ---ILTLPFIYPPTTLEFLLKNWDHNCQ----IVFADETCGSENSLEKLHAIAHIPNVAI 192 L + + P TLE L +H+ + + +A S L A A P + Sbjct: 140 RRLALVVEGLEQPWTLERAL---EHHAEWPGHVAWARGR--GRPSAADLDAPA--PGRRL 192 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L+GPEGG E F LSLGP +LR+ TA VA +A Sbjct: 193 LVGPEGGLTDGEVTLAMDAGFQM-LSLGPWVLRTPTAVVAGLA 234 >gi|317484787|ref|ZP_07943685.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316923969|gb|EFV45157.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 23/224 (10%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKI---SYVGKSIRFKVEYQSRSQTKQSDVQY 84 + H+L VLR++EG+++ + +G+ E ++ K++ ++ + +S V Sbjct: 35 ESHHLTRVLRIREGEDVRVLDGRGREGRFRVLPYKKNAKAVALRLLDEWTYPEPESKVIL 94 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIR---------PVITRYTQNTHYNMDRVRTYTISAA 135 K R ++++K+VE I PV + ++ + + A Sbjct: 95 AAGWTKAARRGWILEKAVEFEASGIWLWQAERSQFPVPSDIKESWQGQL-------AAGA 147 Query: 136 EQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI- 192 +QC LP + P E + + C+ G ++ + P + Sbjct: 148 KQCRNPWLPELRTMPGGVDELIALAEELGCEHRHVLVESGHKSVMSLTPDTLGQPGRTLC 207 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++GPEGG+ ++E E L F+ P +LG R+LR +TAAV + L Sbjct: 208 VVGPEGGFTAQEVEKLTRAGFL-PATLGERVLRWETAAVLCLGL 250 >gi|289167412|ref|YP_003445681.1| hypothetical protein smi_0564 [Streptococcus mitis B6] gi|288906979|emb|CBJ21813.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 247 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNVV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199 P + L +D I+ A E E L+ + +A + + GPEGG Sbjct: 143 PSVKLFEKKADFLAQFDQFDSIIVAYEESAKEGEVAVLLQAVTGLAKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243 >gi|254556845|ref|YP_003063262.1| hypothetical protein JDM1_1678 [Lactobacillus plantarum JDM1] gi|254045772|gb|ACT62565.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] Length = 250 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHY-NMDRVRTYTISAAEQCDILTL 143 K ++ + ++Q+ E+G A + + ++ N + R+ AAEQ + Sbjct: 88 KGDKPEQIVQRGTELGASAFVFFDSQWAVAKWAANKRARKLARLAKIAQGAAEQSHRTMI 147 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAILIGPEGGY 200 P + T L LL + ++ +V +E+ S ++ L + + + GPEGG Sbjct: 148 PSVSYATDLNQLLAHVSYDTGVVAWEESAKQGESSQLVQTLKTMTAPQRLLAIFGPEGGL 207 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +E TL + +T LGPRI+R++TA + ++ V C Sbjct: 208 APQEVATLQT-AGITAAGLGPRIMRAETAPLYLLSSVSFWC 247 >gi|153807645|ref|ZP_01960313.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185] gi|149130007|gb|EDM21219.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185] Length = 233 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 9/211 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SDVQ 83 ++ + VLR+ GD I L +GK + ++I+ + R V + K + Sbjct: 18 EEAQHCTRVLRLSIGDEITLTDGKGSFYKAEIT-AATNKRCLVAIKETIFQKPLWPCHLH 76 Query: 84 YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +P K +R ++ +K+ E+G + + R+++ +R+ ISA +Q Sbjct: 77 IAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKNERIEKILISAIKQSLKAR 136 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP + T + N + Q A G + L+ + + +LIGPEG + Sbjct: 137 LPKLNEMTDFNKFI-NQEFKGQKFIAHCYEGEKPLLKDVLKAGE--DALVLIGPEGDFSE 193 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E F TP+SLG LR++TAA+ A Sbjct: 194 GEVEKAIERGF-TPISLGKSRLRTETAALVA 223 >gi|323483784|ref|ZP_08089163.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163] gi|323402869|gb|EGA95188.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163] Length = 245 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 109/220 (49%), Gaps = 10/220 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ +L+ G++L + + I F + +S S+ + Sbjct: 19 TGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKILFGILEKSESEMELPARI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 ++F + K ++++ +IQK+VE+G I PV T+ ++ + R + SAA+ Sbjct: 79 HLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSKKEEARIKRWNAISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + + L+ D +++ + G E + L ++AI IG Sbjct: 139 QSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEETRRLLQTAEAGMDIAIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 PEGG+ EE V+P+SLG RILR++TA + ++ Sbjct: 199 PEGGFEEEEIRQAGERG-VSPVSLGRRILRTETAGLCVLS 237 >gi|157150621|ref|YP_001451092.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus gordonii str. Challis substr. CH1] gi|157075415|gb|ABV10098.1| conserved hypothetical protein TIGR00046 [Streptococcus gordonii str. Challis substr. CH1] Length = 247 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84 D ++ V+R+KE D + L+F+ DG + +++ V S + +E + + + V+ Sbjct: 20 DTAKHMFSVMRLKEDDQVTLVFD--DG--VKRLARVLDSSQQSLEILEELADNSELPVRV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K ++L+++ QK+ E+G AI ++ + +++ AAE Sbjct: 76 TIASGFPKGDKLEFIAQKATELGASAIWGFPADWSVAKWDGKKLDKKTEKLEKIAQGAAE 135 Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAI 192 Q +P + +FL + + +V +E+ S + L +A V Sbjct: 136 QSKRNLIPEVRLFDKKADFLAQLAQFDTIVVAYEESAKEGESAALVRALSGLAAGAKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG +E + H V+ LGPRILR++TA + + V + Sbjct: 196 IFGPEGGLSPDEIDAFHQAGAVSA-GLGPRILRAETAPLYVLTAVSVLS 243 >gi|319745949|gb|EFV98232.1| RsmE family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 246 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 21/226 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85 D ++ +V+R+ E D ++L + L+K+ V S RF++ + S + I Sbjct: 20 DTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKV--VDSSAHRFQILEELDSNVEMPVQVTI 77 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 S K ++LD + QK+ E+G AI V+ + D++ + AAEQ Sbjct: 78 ASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQS 137 Query: 139 DILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVA 191 LP + L +D +I A E E + + L + + Sbjct: 138 KRNRLPQVRLFEKKADFQAELNGFD---KIFIAYEESAKEGEMSALAQNLQTVKAGDKLL 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG +E + + + LGPRI+R++TA + A++++ Sbjct: 195 FIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 239 >gi|28493248|ref|NP_787409.1| 16S ribosomal RNA methyltransferase RsmE [Tropheryma whipplei str. Twist] gi|28572640|ref|NP_789420.1| hypothetical protein TW491 [Tropheryma whipplei TW08/27] gi|28410772|emb|CAD67158.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476289|gb|AAO44378.1| unknown [Tropheryma whipplei str. Twist] Length = 235 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 14/153 (9%) Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS--AAEQCDILTLPFIYPPTTL 152 + ++ +VE+G+ I P + + +N R +I+ AA+Q P + Sbjct: 94 ESAVRSAVELGVDRIVP----WKSDRSFNSSSRRWSSIAREAAKQSRRAWFPVVKADIPS 149 Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 E L++ + I+ GS L L + +V +LIGPEGG EE + ++ Sbjct: 150 ERLVEEIGDSLAIILDP---GSNTRLSSLGNLFLQRKSVFLLIGPEGGITREE---ISTI 203 Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P + SLG L+S TA+VAA++LV G W Sbjct: 204 PGIC-CSLGIETLKSSTASVAALSLVNFFLGRW 235 >gi|315186740|gb|EFU20498.1| protein of unknown function DUF558 [Spirochaeta thermophila DSM 6578] Length = 235 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 28/232 (12%) Query: 26 GDQ-YHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKS-IRFKVEYQS--RSQTKQ 79 GD+ Y +L VLR++EG+ + + G+ GE ++ V + +R + Sbjct: 18 GDRRYEHLVSVLRVREGEVVRVGVLGGRMGE--GRVEEVAREEVRLSCTFDRDPPPPLPV 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI-------TRYTQNTHYNMDRVRTYTI 132 + + PI RL + +G R V+ Y ++T + I Sbjct: 76 TLLVAAVRPIVGRRLLRDLSA-----LGLERVVVFPARLSERSYLESTLWKEGGWERSLI 130 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AEQ +P + +LE ++ + V DE G + + + Sbjct: 131 EGAEQGVTTRVPEVVRVRSLEEGVRMCGDGVRYV-CDEAAG------QGEGVVRGARYVV 183 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPE G+ EE+ L FV LSLGPR+LR++ A A+ V G W Sbjct: 184 AVGPERGWTDEERRVLEREGFVR-LSLGPRMLRTEVACHVALGRVAEGAGWW 234 >gi|187918227|ref|YP_001883790.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia hermsii DAH] gi|119861075|gb|AAX16870.1| hypothetical cytosolic protein [Borrelia hermsii DAH] Length = 242 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 33/224 (14%) Query: 29 YHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 YHYL V R+K GD + +L G++ + I IR + +T+ ++ S Sbjct: 24 YHYLVDVRRVKLGDTLNVLLRGREIRFAEIIGINNNLIRLSTLKIEKLKTRDFEISMFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDIL 141 +K +LD +++ VE+G+ I V + R + + R A +Q Sbjct: 84 NLKGRKLDLSLRQIVEIGVDQINIVNADNSVARIEMDDLKFKSSRFAKLIDEALKQSGNT 143 Query: 142 TLPFI----------YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P I Y P+ ++ H ++ +CG++ I+ + Sbjct: 144 QVPSINFYRNFFSIPYSPSVSYYVA----HKDGVLL---SCGND--------ISASGKIG 188 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ILIGPEG + E + L F + ILR+DTA V ++ Sbjct: 189 ILIGPEGCFSKSEIDFFKKLNF-QFVRFNTPILRADTAIVYSLV 231 >gi|120602447|ref|YP_966847.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris DP4] gi|120562676|gb|ABM28420.1| protein of unknown function DUF558 [Desulfovibrio vulgaris DP4] Length = 249 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 12/219 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ----S 80 +G + +L V+R+ GD I L +G E + +++ ++I VE S T S Sbjct: 18 TGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNI---VELTPESITTHPEPVS 74 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDRVRTYTISAAEQC 138 K R ++++K+VE+ AI ++Q+ + + ++ A+Q Sbjct: 75 RAVLAVGWGKAVRRSWLMEKAVELEASAIWLWQADHSQSPVPDDIKESWLAQMVAGAKQS 134 Query: 139 DILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP + P +E LL+ + + F + +L + + + ++GPE Sbjct: 135 ANPWLPALRTLPGGIEELLRA-SSDFERRFMLWEGETPEALLEAKDVGGVGTTLYVVGPE 193 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 GG+ + E + L + P+SLG R+LR +TAA+ + L Sbjct: 194 GGFSAREVKALREGGMM-PVSLGQRVLRWETAALLCLGL 231 >gi|149020848|ref|ZP_01835377.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP23-BS72] gi|168483305|ref|ZP_02708257.1| protein YqeU [Streptococcus pneumoniae CDC1873-00] gi|225857376|ref|YP_002738887.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae P1031] gi|147930489|gb|EDK81472.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP23-BS72] gi|172043230|gb|EDT51276.1| protein YqeU [Streptococcus pneumoniae CDC1873-00] gi|225726153|gb|ACO22005.1| protein YqeU [Streptococcus pneumoniae P1031] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E G E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLTQLDQFDSIIVAYEESGKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|315613654|ref|ZP_07888561.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314345|gb|EFU62390.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%) Query: 30 HYLAHVLRMKEGDN-ILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 ++ V+R+KE D IL+FN DG + L+++ V ++ +F++ + + + VQ + Sbjct: 23 KHMFQVMRLKEDDEVILVFN--DGIKRLARVLDV-EARQFEL-VEELADNVELPVQVTIA 78 Query: 88 P--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 K ++L+++ QK E+G I ++ + ++++ + A+EQ Sbjct: 79 SGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGASEQSK 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---G 195 +P I L D IV A E E L A+ + A L+ G Sbjct: 139 RNLVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAALLQAVTGLEKGAKLLFIFG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 PEGG E E+ S V LGPRILR++TA + A++ + + Sbjct: 199 PEGGLSPAEIESFESKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|323353566|ref|ZP_08088099.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66] gi|322121512|gb|EFX93275.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66] Length = 250 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 19/229 (8%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84 D ++ V+R+KEGD + L+F+ DG + +++ V + +E + + + VQ Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLARVLDPSQQSLEILEELADNTELPVQV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K ++L+++ QK E+G AI ++ + +++ AAE Sbjct: 76 TIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135 Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAI 192 Q +P I +FL D + IV +E+ + + + L +A V Sbjct: 136 QSKRNLIPEIRLFNKKADFLATLADFDRIIVAYEESAKAGETAALVSALSGLAAGAKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG +E V+ LGPRILR++TA + A+ V + Sbjct: 196 IFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|312867956|ref|ZP_07728160.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis F0405] gi|311096360|gb|EFQ54600.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis F0405] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 15/224 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87 ++ V+R+KE D + L + L+++ V G+ + E + Q + F Sbjct: 23 KHMFQVMRVKEEDEVTLVFDDGIKRLARVVNVEGRQLELVEELDDNVELPVQVTIASGFP 82 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 83 --KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197 +P I L D +IV A E E ++ L + + ++ GPE Sbjct: 141 LVPSITLFEKKSDFLAQLDQFDRIVVAYEESAKEGEVAALIQSLTGLEAGCKLLLIFGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG E E+ + V LGPRILR++TA + A++ V + Sbjct: 201 GGLSPAEIESFTAKGAVLA-GLGPRILRAETAPLYALSAVSVVT 243 >gi|229493162|ref|ZP_04386954.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus erythropolis SK121] gi|229319893|gb|EEN85722.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus erythropolis SK121] Length = 253 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 33/239 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + A V R+ G+ ++L +G+ ++++ VGK R + SDVQ + Sbjct: 22 GQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKD---------RLELLVSDVQVL 72 Query: 86 FSP----------IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRT 129 P K R + ++ + E G+ A+ P V + R R+ Sbjct: 73 EQPKPLVTLVQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAKGVARWRS 132 Query: 130 YTISAAEQCDILTLPFIYP----PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +SAA+Q +P I P + + + E+ + L L +A Sbjct: 133 AAVSAAKQSRRAFVPEIAELHKTPAVIALVRDAVARGAVVAVLHES--ATTPLAGLP-LA 189 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L S TP+ LGP +LR+ TA A+ + + W Sbjct: 190 SADEVFLVVGPEGGLDDSEISAL-SEAGATPVLLGPTVLRTSTAGAVALGAIGVLTDRW 247 >gi|198274982|ref|ZP_03207514.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135] gi|198272429|gb|EDY96698.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135] Length = 233 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 9/208 (4%) Query: 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK---QSDVQYIFSPIK 90 VLR+ G+ I L +GK + + IS + R V+ +++ + + + +P K Sbjct: 25 RVLRLGVGEEITLTDGKGCFYRAVISAATQK-RCVVKVVEKTEQEPFWKGHLHLALAPTK 83 Query: 91 T-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 +R++++ +K+ E+G + + R+++ +RV +SA +Q P + Sbjct: 84 NMDRMEWLAEKATEIGFDELTFLNCRFSERKVIKTERVEKIVVSAVKQSLKARKPVVNEM 143 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 T ++ + Q A G + L + + + +LIGPEG + EE L Sbjct: 144 TDFRRFMER-EFTGQKFIAHCYEGEKPLLRDV--LRKDEDAVVLIGPEGDFSPEEV-ALA 199 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +SLG LR++TAA+ A+ L+ Sbjct: 200 AEKGFQAVSLGKSRLRTETAALVAVHLM 227 >gi|237715604|ref|ZP_04546085.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408613|ref|ZP_06085159.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646252|ref|ZP_06723905.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a] gi|294808155|ref|ZP_06766923.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC 1b] gi|298481449|ref|ZP_06999641.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22] gi|229444313|gb|EEO50104.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353478|gb|EEZ02572.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638385|gb|EFF56750.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a] gi|294444662|gb|EFG13361.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC 1b] gi|295086912|emb|CBK68435.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens XB1A] gi|298272313|gb|EFI13882.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22] Length = 232 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR+ GD I L +GK + ++I+ F ++ Q Sbjct: 9 IQKSNELPEEEAQHCTRVLRLGIGDEITLTDGKGNFYKAEITVATNKRCFVTIKETIFQE 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + + ++ + Q A G + L+ + + +LI Sbjct: 129 IKQSLKARLPKLNEMIEFDPFIRQ-EFKGQKFIAHCYEGEKPLLKNVLKPGE--DALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 186 GPEGDFSEEEVKKAIEQGFV-PISLGKSRLRTETAALVA 223 >gi|46580095|ref|YP_010903.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris str. Hildenborough] gi|46449511|gb|AAS96162.1| conserved hypothetical protein TIGR00046 [Desulfovibrio vulgaris str. Hildenborough] gi|311233906|gb|ADP86760.1| protein of unknown function DUF558 [Desulfovibrio vulgaris RCH1] Length = 249 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 6/216 (2%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 +G + +L V+R+ GD I L +G E + +++ + S+ E + S Sbjct: 18 TGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNSVELTPESITTHPEPVSRAV 77 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDRVRTYTISAAEQCDIL 141 K R ++++K+VE+ AI ++Q+ + + ++ A+Q Sbjct: 78 LAVGWGKAVRRSWLMEKAVELEASAIWLWQAEHSQSPVPDDIKESWLAQMVAGAKQSANP 137 Query: 142 TLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP + P +E LL+ + + F + +L + + + ++GPEGG+ Sbjct: 138 WLPALQTLPGGIEELLRA-SSDFERRFMLWEGETPEALLEAKDVGGVGTTLYVVGPEGGF 196 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + E + L + P+SLG R+LR +TAA+ + L Sbjct: 197 SAREVKALREGGMM-PVSLGQRVLRWETAALLCLGL 231 >gi|332201188|gb|EGJ15259.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA47901] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D ++ A E G E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSVIVAYEESGKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|303232126|ref|ZP_07318829.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-049-V-Sch6] gi|302513232|gb|EFL55271.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-049-V-Sch6] Length = 243 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/251 (21%), Positives = 112/251 (44%), Gaps = 34/251 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +K++F+ PL D H++ HV R + + G D + Sbjct: 1 MKKIFIPTPL--DESIVLPKDVTHHILHVFR-HNIEKPITVTGSDN----------RCGI 47 Query: 67 FKVEYQSRSQTKQSDVQYIFSP------------IKTNRLDYMIQKSVEMGMGAIRPV-- 112 +++ + + S ++YI SP +K +L++++QK+ E+ + + V Sbjct: 48 YQINDEINGLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYLVPT 107 Query: 113 ---ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168 + +Y + R + A++QC LP + L +L ++V Sbjct: 108 SNCVAKYDAKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVDEPLSNVLDIESECLKLVAY 167 Query: 169 DETCGS--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + G +++L+ +++ + ++ I IGPEGG+ +E + + ++LG ILR+ Sbjct: 168 ENEAGYTIKDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGGQS-VALGHTILRA 226 Query: 227 DTAAVAAMALV 237 +TAA+AA+++V Sbjct: 227 ETAAIAALSMV 237 >gi|306824715|ref|ZP_07458059.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432926|gb|EFM35898.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFS 87 ++ V+R+KE D + L+F+ DG + +++ V V+ ++R + + V + Sbjct: 23 KHMFQVMRLKEDDEVTLVFD--DG--IKRLARV-------VDVENRQFELVEELVDNVEL 71 Query: 88 PI---------KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 PI K ++L+++ QK E+G I ++ + ++++ + Sbjct: 72 PIQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIAL 131 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVA 191 AAEQ +P I L D I+ A E E + L A+A + A Sbjct: 132 GAAEQSKRNIVPSIQLFEKKADFLAQLDQFDSIIVAYEESAKEGEVAALLQAVAGLEKGA 191 Query: 192 ILI---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 L+ GPEGG E E+ + V LGPRILR++TA Sbjct: 192 KLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETA 231 >gi|327402528|ref|YP_004343366.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola taffensis DSM 16823] gi|327318036|gb|AEA42528.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola taffensis DSM 16823] Length = 226 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 15/214 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85 ++ ++ VLR GD LL NG ++++ K KV + + S Sbjct: 20 EESKHIIRVLRYVNGDQFLLLNGLGLIVTAEVTDAHPKKCAVKVVSKEQKTRDGSGFHLG 79 Query: 86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC--DILT 142 +P K +R+++M++K VE+G + + ++ +DR++ ISA +Q D L Sbjct: 80 IAPTKNLDRMEWMVEKIVEIGATKLTFLNCERSERVQLKLDRLQRVAISAMKQAQHDFL- 138 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 L + +F+ KN + A GS+ S+++L P+ ILIGPEG + Sbjct: 139 LEIEELQSFSDFVAKNPNGG----LAHCMNGSKQSVKEL----KFPS-RILIGPEGDFSE 189 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E E + + LG LR++TA + A L Sbjct: 190 AELELALKHGY-EAVHLGESRLRTETAGMVASVL 222 >gi|296877184|ref|ZP_06901224.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431704|gb|EFH17511.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 11/222 (4%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ V+R+KE D + L + L+++ V VE + + V Sbjct: 23 KHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVESRQLELVEELADNVELPVQVTIASGFP 82 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLSKKVEKLEKIALGAAEQSKRNLV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199 P I L D +IV A E E ++ L + + + GPEGG Sbjct: 143 PSITLFEKKADFLAQLDQFDRIVVAYEESAKEGEAAALIQSLTGLEAGSKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + + LGPRILR++TA + A++ V + Sbjct: 203 LSPAEIESFEAKGAILA-GLGPRILRAETAPLYALSAVSVVT 243 >gi|294673777|ref|YP_003574393.1| hypothetical protein PRU_1064 [Prevotella ruminicola 23] gi|294472516|gb|ADE81905.1| conserved hypothetical protein TIGR00046 [Prevotella ruminicola 23] Length = 231 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/224 (20%), Positives = 101/224 (45%), Gaps = 5/224 (2%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + Q + D+ + VLR+K GD + L +G + ++++ + + Q Sbjct: 5 ENQTELPTDEAMHAMRVLRLKSGDELFLMDGVGNYFRAQVTVAATHHCYYEILEKLPQEP 64 Query: 79 Q--SDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135 Q + +P K +R+++M++K+ E+G+ + + ++++ + R+ +A Sbjct: 65 QWKGHLHLGIAPTKMMDRMEWMMEKATEVGIDEVSFLNCKFSERRLVKLVRLDKIVTAAV 124 Query: 136 EQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q P + FL + I E ++L + + +L+ Sbjct: 125 KQSHKAWKPQVNEMVHFNHFLEQPIQGRKYIAHCYEEVPRVELFDELRKPSDSQDATVLV 184 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + +E + + +V+ +SLG LR++TA +AA+ ++Q Sbjct: 185 GPEGDFSIDEVKAAVAAGWVS-VSLGSARLRTETAGLAAVMMMQ 227 >gi|126696059|ref|YP_001090945.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9301] gi|126543102|gb|ABO17344.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. MIT 9301] Length = 257 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 37/234 (15%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ HY+ V+R+K G I + NG+ W K+I+ K + Q K+ Y+F Sbjct: 27 EETHYINKVMRIKNGKEIFIANGEGSLW--------KAIKIKNDCLEIGQLKKP---YLF 75 Query: 87 SP-----------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYTI- 132 I + + +++ E+G+ I+P+ + N + N R +R +I Sbjct: 76 QEQEIHLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNSII 135 Query: 133 -SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENS-LEKLHAIAHI 187 A EQ + L P I + LK+ D+ ++ + +ET N L K + Sbjct: 136 NEAVEQSERLWKPSILNGMDIVEWLKSRDNQERVSISITREETLYDLNQWLRKQQEFVNR 195 Query: 188 PNVAI--LIGPEGGYHSEEKETLH--SLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGG+ S+E + + ++ FV L ILR+ TA++ A +++ Sbjct: 196 RGGIFWNVIGPEGGWSSKEIDFFNRKNIAFV---KLSDTILRTSTASINASSIL 246 >gi|331265876|ref|YP_004325506.1| hypothetical protein SOR_0503 [Streptococcus oralis Uo5] gi|326682548|emb|CBZ00165.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 247 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ T+ AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKITLGAAEQSKRNLV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D IV A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAALLQAVTGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|253583198|ref|ZP_04860396.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251833770|gb|EES62333.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 237 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 12/210 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQSDVQYIFS 87 ++L +V R+K + I +G+ + +S K I ++E ++ R K + Sbjct: 25 NHLKNVFRVKLDEKIRAVDGEKEYFCKVVSIDKKEIILEIEQIFEDRYSHKVK-IDAALG 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 +K +++D IQK E+G+ I P+ + R D+ A +QC + I Sbjct: 84 ILKNDKMDLAIQKLTEIGVNKIIPLAVKRGVVKITEKKDKWDLIVREALKQCQAVKATEI 143 Query: 147 YPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEGGYHSE 203 LE + + +D ++ C E +L+ L + + +IG EGG+ E Sbjct: 144 DEVKKLEEIEFEEYD----LIIVPYECEEEYTLKNLLRNEEKSPKKILYIIGSEGGFDPE 199 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E E L ++LG RILR++TA++ Sbjct: 200 EIEFLKRKK-ANIVTLGRRILRAETASIVV 228 >gi|297571544|ref|YP_003697318.1| hypothetical protein Arch_0977 [Arcanobacterium haemolyticum DSM 20595] gi|296931891|gb|ADH92699.1| protein of unknown function DUF558 [Arcanobacterium haemolyticum DSM 20595] Length = 245 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 31/251 (12%) Query: 10 LFVDFPL---CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++VD L C+ + GD+ + A V R + G+ I + NGK ++ V K S+ Sbjct: 5 VYVDPDLSAACVGETIRLDGDEARHAATVRRTRVGERIDIVNGKGLRATITVTDVAKSSL 64 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQ-- 118 VE+ + + + + K R + ++ + E G A P I ++ Sbjct: 65 VGTVEHVANDPAHNPQITLVQALAKGGRDEQAVETATEYGADAFIPWQAERSIVSWSDPA 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R SAA+Q +P + P + L C I + C + Sbjct: 125 KARKGVGRWEATAQSAAKQSRRSWIPTVDQPHSSASLA------CHIA---DCCADGGVV 175 Query: 179 EKLHAIAHIP----------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 H A P V I++GPEGG +E E L + L LG +LRS T Sbjct: 176 YICHESATTPITTQLDSSSRKVMIVVGPEGGITDKELELLTNAGGRVVL-LGEHVLRSAT 234 Query: 229 AAVAAMALVQA 239 A A+A+++A Sbjct: 235 AGPWAIAVIRA 245 >gi|224373445|ref|YP_002607817.1| 16S ribosomal RNA methyltransferase RsmE [Nautilia profundicola AmH] gi|223589351|gb|ACM93087.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 219 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 44/238 (18%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 FV FP Q +GD++ YL V R+K+ + + + N KD ++L Y+ +K+E Sbjct: 3 FVYFP-NPGVQITLTGDEHKYLFKVRRVKKNELVKIRNLKD-DYL----YI-----YKIE 51 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYM---------IQKSV----EMGMGAIRPVITRYT 117 ++ + S V+ SP K + ++ I+K++ E+G+G I + Y+ Sbjct: 52 AINKKEAILSLVEKKLSPNKPEKFFHLAWCIIDPKNIEKALPSLNEIGVGKITFIYCDYS 111 Query: 118 Q-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--TCGS 174 Q N ++R+ I++ +QC +L I + + + +++ + F + CG Sbjct: 112 QKNFKLKLERLTKILINSCQQCGRSSLMEIEFLDSSDEFFQKYNNFSALDFDGKEIKCGF 171 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +S LIGPEGG+ E++ F L ILRS+TAAV Sbjct: 172 YSS------------YPFLIGPEGGFSDNERKY-----FKEKFRLKGFILRSETAAVG 212 >gi|28378630|ref|NP_785522.1| hypothetical protein lp_1989 [Lactobacillus plantarum WCFS1] gi|300768158|ref|ZP_07078063.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180786|ref|YP_003924914.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271466|emb|CAD64371.1| unknown [Lactobacillus plantarum WCFS1] gi|300494222|gb|EFK29385.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046277|gb|ADN98820.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 250 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 10/161 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHY-NMDRVRTYTISAAEQCDILTL 143 K ++ + ++Q+ E+G A + + ++ N + R+ AAEQ + Sbjct: 88 KGDKPEQIVQRGTELGASAFVFFDSQWAVAKWAANKRARKLARLAKIAQGAAEQSHRTMI 147 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAILIGPEGGY 200 P + T L LL + ++ +V +E+ S ++ L + + + GPEGG Sbjct: 148 PSVSYATDLNQLLAHVSYDTGVVAWEESAKQGESSQLVQTLKTMTAPQRLLAIFGPEGGL 207 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +E TL + + + LGPRI+R++TA + ++ V C Sbjct: 208 APQEVATLQT-AGIAAVGLGPRIMRAETAPLYLLSSVSFWC 247 >gi|160887114|ref|ZP_02068117.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483] gi|156107525|gb|EDO09270.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483] Length = 232 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 7/219 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR+ GD I L +GK + ++I+ F ++ Q Sbjct: 9 IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQE 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + + ++ + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLGKSRLRTETAALVA 223 >gi|76799987|ref|ZP_00781940.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] gi|76584697|gb|EAO61466.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] Length = 222 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD++ QK+ E+G AI V+ + D++ + AAEQ L Sbjct: 59 KGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQSKRNRL 118 Query: 144 P---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 P + L +D +I A E E L + L + + + GP Sbjct: 119 PQVRLFEKKADFQAELAGFD---KIFIAYEESAKEGELSALAQNLQTVKAGDKLLFIFGP 175 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG +E + + + LGPRI+R++TA + A++++ Sbjct: 176 EGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 215 >gi|332364867|gb|EGJ42636.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 247 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KEGD + L + L+++ + VE + + V Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQSLEIVEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G AI ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKKLGKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196 +P + FL D + IV +E+ S A++ + V + GP Sbjct: 140 NLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESAALFRALSGLEAGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 EGG +E + V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|307707510|ref|ZP_07643992.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307616462|gb|EFN95653.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] Length = 247 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 29/231 (12%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------V 82 ++ V+R+KE D + L+F+ DG + ++++V VE + ++ D V Sbjct: 23 KHMFQVMRLKEDDEVTLVFD--DG--VKRLAHV-----LDVEARQFELVQELDDNVELPV 73 Query: 83 QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 Q + K ++L+++ QK E+G I ++ + ++++ + A Sbjct: 74 QVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGA 133 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNV 190 AEQ +P I L D +IV A E E L+ ++ + + Sbjct: 134 AEQSKRNLVPSIKLFEKKGDFLAQLDQFDRIVVAYEESAKEGEAAALLQAVNGLEKGAKL 193 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG E E+ + V LGPRILR++TA + A++ + + Sbjct: 194 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243 >gi|333027170|ref|ZP_08455234.1| putative RsmE family RNA methyltransferase [Streptomyces sp. Tu6071] gi|332747022|gb|EGJ77463.1| putative RsmE family RNA methyltransferase [Streptomyces sp. Tu6071] Length = 251 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 15/230 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEY-QSRSQTKQSDV 82 G + + V R++ G+ I+L +G +G W + + GK R VE + R + S Sbjct: 25 GPEGRHAVSVKRLRPGEEIVLSDG-EGRWAPCVVKAAEGKD-RLSVEVGELREEPVPSPR 82 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTISAA 135 + + K +R + ++ E G+ AI P +T++ + ++ + R A Sbjct: 83 LVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDRGAKSLAKWRATAREAG 142 Query: 136 EQCDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q P I +T E +V ++T + L L + ++ +++ Sbjct: 143 KQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPLATLP-LPDEGDIVLVV 201 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG EE + + LGP +LR+ TA AA+AL+ G W Sbjct: 202 GPEGGVAPEEIASFTAA-GAHVCRLGPSVLRTSTAGTAAVALLSGRTGRW 250 >gi|324990424|gb|EGC22362.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK353] gi|327459571|gb|EGF05917.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1] gi|327490771|gb|EGF22552.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 250 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KEGD + L + L+++ + VE + + V Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQSLEIVEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G AI ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKKLGKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196 +P + FL D + IV +E+ S A++ + V + GP Sbjct: 140 NLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESAALFRALSGLEAGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 EGG +E + V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|47459063|ref|YP_015925.1| hypothetical protein MMOB2280 [Mycoplasma mobile 163K] gi|47458392|gb|AAT27714.1| expressed protein [Mycoplasma mobile 163K] Length = 223 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYT---ISA 134 +++V + I + ++QK+ E+G I P I++++ + + ++ + ++A Sbjct: 65 KNEVVLAMALINPKNFELVLQKATELGATKIIPFISKFSNFKKDFALKKIERWNEIILNA 124 Query: 135 AEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 + Q +P + P +L N+++ I + + E L+ N + Sbjct: 125 SSQSFRNKVPILEKPLDFSQVLDLNYEYK-YIAYENTDLSKE-----LNTNLFCSNSIFI 178 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 IGPEGG+ +E +T + T +SLG RILRS+TAA ++ V Sbjct: 179 IGPEGGFFQDEIKTAIEKGWKT-ISLGKRILRSETAAFFVLSRVN 222 >gi|322375727|ref|ZP_08050239.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300] gi|321279435|gb|EFX56476.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300] Length = 247 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 15/224 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88 ++ V+R+KE D + L + L+++ V ++ +F++ Q + + VQ + Sbjct: 23 KHMFQVMRLKEEDEVTLVFDDGIKRLARVLDV-EACQFEL-VQELADNVELPVQVTIASG 80 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 81 FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENSLEKLHAIAHIPNVAILI---GPE 197 +P + L D IV A +E+ + L A+ + A L+ GPE Sbjct: 141 IVPSVKLFEKKADFLAQLDQFDSIVVAYEESAKEREAAALLQAVTGLEKGAKLLFIFGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG E E+ + V LGPRILR++TA + A++ + + Sbjct: 201 GGLSPTEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|325689540|gb|EGD31545.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK115] Length = 250 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 17/228 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYI 85 D ++ V+R+K GD + F DG + +++ V + +E + + + VQ Sbjct: 20 DTAKHMFSVMRLKAGDQVT-FVFDDG--VKRLARVLDPSQQSLEIVEELADNTELPVQVT 76 Query: 86 FSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 + K ++L+++ QK+ E+G AI ++ + +++ AAEQ Sbjct: 77 IASGFPKGDKLEFITQKATELGASAIWGFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQ 136 Query: 138 CDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAIL 193 +P I + ++FL D + IV +E S + L +A V + Sbjct: 137 SKRNLIPEIRFFDKKVDFLAALTDFDRIIVAYEELAKEGESAALVRALSGLAAGAKVLFI 196 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GPEGG +E V+ LGPRILR++TA + A+ V + Sbjct: 197 FGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|226307226|ref|YP_002767186.1| hypothetical protein RER_37390 [Rhodococcus erythropolis PR4] gi|226186343|dbj|BAH34447.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 253 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 49/247 (19%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + A V R+ G+ ++L +G+ ++++ VGK R + SDVQ + Sbjct: 22 GQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKD---------RLELLVSDVQVL 72 Query: 86 FSP----------IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRT 129 P K R + ++ + E G+ A+ P V + R R+ Sbjct: 73 EQPKPLVTLIQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAKGVARWRS 132 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHI 187 +SAA+Q +P I + L H V A + + LH A Sbjct: 133 AAVSAAKQSRRAFVPEI---SDL--------HKTAAVIALIRDAVARGAVVAVLHESATT 181 Query: 188 P----------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V +++GPEGG E L S TP+ LGP +LR+ TA A+ + Sbjct: 182 PLAGLPLASADEVFLVVGPEGGLDDSEISAL-SEAGATPVLLGPTVLRTSTAGAVALGAI 240 Query: 238 QAICGDW 244 + W Sbjct: 241 GVLTDRW 247 >gi|307297950|ref|ZP_07577754.1| protein of unknown function DUF558 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916036|gb|EFN46419.1| protein of unknown function DUF558 [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 17/218 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80 G+ H V R K GD + +G+ + + +GKS + EY R Sbjct: 18 GGETKHL--RVTRAKPGDELTGIDGRGTVYRFLLEELGKSSASGTVVEREYVERDG---K 72 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 + + K RL +I+K+ E+G+ I + + + ++ + A E Sbjct: 73 SITVAVAATKWPRLHILIEKATELGVDRIE-LFNSLRSVSRVDETKLTKFNAVAREAAKQ 131 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P+I T + L +N + F G LE +A + +++GPEGG+ Sbjct: 132 SVNPYIPEITVSQTLPLEGSYNLLLEF-----GGRPLLEVEEKLACERKLRLIVGPEGGF 186 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EE + + + TP+SLG R LR +T+ + + ++ Sbjct: 187 APEEIKDIST--RCTPVSLGRRTLRVETSVIVVLGIIN 222 >gi|126436047|ref|YP_001071738.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JLS] gi|126235847|gb|ABN99247.1| protein of unknown function DUF558 [Mycobacterium sp. JLS] Length = 248 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 18/232 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 GD + +V R + G+++ L +G + VGK + R+ T + + Sbjct: 21 GDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTARVLERRTVTPPAPAVTV 80 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY--TQNTHYNMDRVRTYTISAAEQ 137 I K++R + ++ + E G A+ + R+ + R R SAA Q Sbjct: 81 VQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAAKVDKGLRRWRAVVRSAARQ 140 Query: 138 CDILTLPFIYPP-TTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 +P + TT E + + D +V + G ++ A A V + Sbjct: 141 SRRAHIPPVDGVVTTAELVCRVTAEVADGATVLVLHESATGPLTGVDLTQARA----VTL 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG EE + L + V + LGP +LR+ TAA + + + W Sbjct: 197 IVGPEGGIADEELDALTAAGAVA-VRLGPTVLRTSTAAAVGLGALGVLTPRW 247 >gi|318061224|ref|ZP_07979945.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp. SA3_actG] gi|318076106|ref|ZP_07983438.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp. SA3_actF] Length = 251 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 15/230 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEY-QSRSQTKQSDV 82 G + + V R++ G+ I+L +G +G W + + GK R VE + R + S Sbjct: 25 GPEGRHAVSVKRLRPGEEIVLSDG-EGRWAPCVVTAAEGKD-RLSVEVGELREEPLPSPR 82 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTISAA 135 + + K +R + ++ E G+ AI P +T++ + ++ + R A Sbjct: 83 LVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDRGAKSLAKWRATAREAG 142 Query: 136 EQCDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q P I +T E +V ++T + L L + ++ +++ Sbjct: 143 KQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPLATLP-LPDEGDIVLVV 201 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG EE + + LGP +LR+ TA AA+AL+ G W Sbjct: 202 GPEGGVAPEEIASFTAA-GAHVCRLGPSVLRTSTAGTAAVALLSGRTGRW 250 >gi|76787751|ref|YP_330523.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae A909] gi|77405013|ref|ZP_00782113.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae H36B] gi|77411955|ref|ZP_00788285.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae CJB111] gi|76562808|gb|ABA45392.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae A909] gi|77161981|gb|EAO72962.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae CJB111] gi|77176307|gb|EAO79076.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae H36B] Length = 246 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 21/226 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85 D ++ +V+R+ E D ++L + L+K+ V S RF++ + S + I Sbjct: 20 DTIKHMFNVMRLTEDDQVVLVFDDTIKRLAKV--VDSSAHRFQILEELDSNVEMPVQVTI 77 Query: 86 FSPI-KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 S K ++LD + QK+ E+G AI V+ + D++ + AAEQ Sbjct: 78 ASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKLAKKEDKLAKIAMGAAEQS 137 Query: 139 DILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVA 191 LP + L +D +I A E E + + L + + Sbjct: 138 KRNRLPQVRLFEKKADFQAELNGFD---KIFIAYEESAKEGEMSALAQNLQTVKAGDKLL 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + GPEGG +E + + LGPRI+R++TA + A++++ Sbjct: 195 FIFGPEGGISPKEIAAFEEAGAIK-VGLGPRIMRTETAPLYALSVI 239 >gi|119716137|ref|YP_923102.1| 16S ribosomal RNA methyltransferase RsmE [Nocardioides sp. JS614] gi|119536798|gb|ABL81415.1| protein of unknown function DUF558 [Nocardioides sp. JS614] Length = 246 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 15/212 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQY 84 GD+ H+ V R++ G+ ++L +G + +S GK + F V +S R + + Sbjct: 24 GDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRV-FTVAVESVRVEPEPEPAVV 82 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K R + ++ E+G+ I P V + ++ R R AA+Q Sbjct: 83 VVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRATAREAAKQ 142 Query: 138 CDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 + P + P +T + + + +V ++ G L+ + + +++GP Sbjct: 143 SRRMRFPSVAPLASTGDVVELLGAADLAVVLHEDATGPVAGLD----VPAAGRIVVVVGP 198 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 EGG +E V + LG +LR+ T Sbjct: 199 EGGLTEDEVAIFVGAGAVC-VRLGAEVLRTST 229 >gi|283955406|ref|ZP_06372905.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp. jejuni 414] gi|283793166|gb|EFC31936.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp. jejuni 414] Length = 218 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 23/212 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQ 83 G+ + +L R+KE + L N +D S I + S K + KQS++ Sbjct: 18 GESFKHLK-ARRVKENSELNLRNLQDNFLYSYIITNLTRNSCTLKFLDKKSQSIKQSELN 76 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILT 142 + I L+ + E+G+ + V T ++Q N +++R IS+ EQC T Sbjct: 77 LALAIIDIKVLEKTLSFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNT 136 Query: 143 -LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 + FI +T EF+ K + + + F E N E IGPEGG+ Sbjct: 137 KMDFIIHQSTQEFVQK-FPNAIMVDFQGEKQSHFNEKE-----------LYFIGPEGGFS 184 Query: 202 SEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232 + E+ L F +SL IL+S TA +A Sbjct: 185 NNER-----LLFNQKISLKSSNILKSQTAIIA 211 >gi|260171577|ref|ZP_05757989.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. D2] gi|293370883|ref|ZP_06617428.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f] gi|315919891|ref|ZP_07916131.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292634099|gb|EFF52643.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f] gi|313693766|gb|EFS30601.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 232 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 7/219 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR+ GD I L +GK + ++I+ F ++ Q Sbjct: 9 IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQE 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + + ++ + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLGKSRLRTETAALVA 223 >gi|253752746|ref|YP_003025887.1| hypothetical protein SSUSC84_1911 [Streptococcus suis SC84] gi|253754571|ref|YP_003027712.1| hypothetical protein SSU1893 [Streptococcus suis P1/7] gi|253756504|ref|YP_003029644.1| hypothetical protein SSUBM407_1958 [Streptococcus suis BM407] gi|251817035|emb|CAZ52687.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818968|emb|CAZ56815.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820817|emb|CAR47583.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|319759164|gb|ADV71106.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis JS14] Length = 248 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85 D ++ V+R++ GD I+L + L+++ +S+ E + S + Sbjct: 21 DTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQSQSVEIIEELTDNVELPISVTIAM 80 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139 P K ++L+++ QK+ E+GM A+ V+ + +++ AAEQ Sbjct: 81 GFP-KGDKLEFVAQKATELGMSALWAFPADWSVVKWDGKKLAKKAEKLEKIAQGAAEQSK 139 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIG 195 +P + L QI+ A E E N ++ L + +V +++G Sbjct: 140 RNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVG 199 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG EE V LGPRILR++TA + A++ + Sbjct: 200 PEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSTI 240 >gi|319940233|ref|ZP_08014585.1| YqeU [Streptococcus anginosus 1_2_62CV] gi|319810535|gb|EFW06871.1| YqeU [Streptococcus anginosus 1_2_62CV] Length = 246 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 16/239 (6%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V+ P+ I+ + D ++ V+R+ E D ++L + L+++S + + VE Sbjct: 10 VENPVIIRDK-----DTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVLNLVEE 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMD 125 + V K ++L+++ QK+ E+G AI + ++ + D Sbjct: 65 LPDNAELPIHVTVASGFPKGDKLEWVAQKTTELGAAAIWAFPSDWSVAKWDGKKLAKKAD 124 Query: 126 RVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 ++ + AAEQ +P + ++FL +C IV +E+ S + A+ Sbjct: 125 KLEKIVLGAAEQSKRNLIPEVRLFEKKVDFLDCLSQFDCVIVAYEESAKEGESAALVKAV 184 Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + + GPEGG E TL + LGPRILR++TA + A++ V + Sbjct: 185 TGLKKGSRILFVFGPEGGLSPAEIATLEEAGAILA-GLGPRILRTETAPLYALSAVSVL 242 >gi|322392665|ref|ZP_08066125.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC 700780] gi|321144657|gb|EFX40058.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC 700780] Length = 247 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 11/216 (5%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ V+R+KE D + L + L+++ V VE + + V Sbjct: 23 KHMFQVMRLKEDDKVTLVFDDGIKRLARVVNVETRQLELVEELADNVELPVQVTIASGFP 82 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNLV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAHIPNVAILI---GPEGG 199 P + L D +IV A E E S + A+A + A L+ GPEGG Sbjct: 143 PEVTLFEKKADFLAQLDQFDRIVVAYEESAKEGESAALIQAVAGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E E+ + V LGPRILR++TA + A++ Sbjct: 203 LSPVEIESFEAKGAVLA-GLGPRILRAETAPLYALS 237 >gi|293365945|ref|ZP_06612648.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307702347|ref|ZP_07639305.1| RNA methyltransferase family protein [Streptococcus oralis ATCC 35037] gi|291315623|gb|EFE56073.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307624150|gb|EFO03129.1| RNA methyltransferase family protein [Streptococcus oralis ATCC 35037] Length = 247 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199 P I L +D IV A E E L+ + + + + GPEGG Sbjct: 143 PSIQLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAALLQTVTGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|146319760|ref|YP_001199472.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis 05ZYH33] gi|146321960|ref|YP_001201671.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis 98HAH33] gi|145690566|gb|ABP91072.1| Uncharacterized protein conserved in bacteria [Streptococcus suis 05ZYH33] gi|145692766|gb|ABP93271.1| Uncharacterized protein conserved in bacteria [Streptococcus suis 98HAH33] gi|292559369|gb|ADE32370.1| hypothetical protein SSGZ1_1914 [Streptococcus suis GZ1] Length = 252 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85 D ++ V+R++ GD I+L + L+++ +S+ E + S + Sbjct: 25 DTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQSQSVEIIEELTDNVELPISVTIAM 84 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139 P K ++L+++ QK+ E+GM A+ V+ + +++ AAEQ Sbjct: 85 GFP-KGDKLEFVAQKATELGMSALWAFPADWSVVKWDGKKLAKKAEKLEKIAQGAAEQSK 143 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIG 195 +P + L QI+ A E E N ++ L + +V +++G Sbjct: 144 RNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVG 203 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG EE V LGPRILR++TA + A++ + Sbjct: 204 PEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSTI 244 >gi|307705458|ref|ZP_07642313.1| RNA methyltransferase family protein [Streptococcus mitis SK597] gi|307620993|gb|EFO00075.1| RNA methyltransferase family protein [Streptococcus mitis SK597] Length = 247 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 15/218 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88 ++ V+R+KE D + L + L+++ V ++ +F++ + + + VQ + Sbjct: 23 KHMFQVMRLKEDDEVTLVFDDGIKRLARVLDV-ETRQFEL-VEELADNVELPVQVTIASG 80 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 81 FPKGDKLEFITQKVTELGARQIWAFPADWSVAKWDDKKLGKKVEKLEKIALGAAEQSKRN 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPE 197 +P + L D ++V A E E L A+A + A L+ GPE Sbjct: 141 LVPSVTLFEKKAAFLAQLDQFDRVVVAYEESAKEGEAAALLQAVAGLEKGAKLLFIFGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GG E E+ + V LGPRILR++TA + A++ Sbjct: 201 GGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALS 237 >gi|327459188|gb|EGF05536.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1057] Length = 250 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 21/218 (9%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTK-QSDVQY 84 D ++ V+R+K GD + L + L+++ G+ S+ E ++ Q + Sbjct: 20 DTAKHMFSVMRLKAGDQVTLVFDDGMKRLARVLDPGQHSLEIMEELADNTELPVQVTIAS 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 F K ++L+++ QK+ E+G GAI ++ + +++ AAEQ Sbjct: 80 GFP--KGDKLEFITQKATELGAGAIWAFQADWSVAKWDGKKLAKKSEKLEKIAQGAAEQS 137 Query: 139 DILTLPFIY---PPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVA 191 +P + + L ++D +I+ A E E + L + V Sbjct: 138 KRNLIPEVRLFDKKADFQAALADFD---RIIVAYEESAKEGETAALVRALSGLEAGAKVL 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GPEGG EE V+ LGPRILR++TA Sbjct: 195 FIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETA 231 >gi|240169914|ref|ZP_04748573.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 13/213 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 GD+ + A V R++ G+ ++L +G+ ++ G+ + +V + + + V Sbjct: 22 GDEGFHAATVRRIRPGEEVVLGDGEGDLARCRVERAGRDGLAARVLERWSTVPARPAVTV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K+ R + I+ + E G A R V + + R R+ SAA Q Sbjct: 82 VQALPKSERSELAIELATEAGADAFVAWQAARCVASWNGSRVDKGLRRWRSVARSAARQS 141 Query: 139 DILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +P + P L +++ +V A + E A+A ++ ++IG Sbjct: 142 RRAYIPPVDGPLSTAALTVRVRDEVARGAMVLALHESATARLAEV--ALAQANSLMLVIG 199 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 PEGG EE + L V + LGP +LR+ T Sbjct: 200 PEGGIAPEEIDALTGAGAVA-VRLGPTVLRTST 231 >gi|322377483|ref|ZP_08051974.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334] gi|321281683|gb|EFX58692.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334] Length = 247 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNVV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L +D I+ A E E L +A + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQFDQFDSIIVAYEESAKEGEAAALLQTVAGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243 >gi|224476685|ref|YP_002634291.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus carnosus subsp. carnosus TM300] gi|222421292|emb|CAL28106.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 250 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 12/159 (7%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNT-HYNMDRVRTYTISAAEQCDILT 142 +K ++ ++++QK E+G PV I + QN + R AAEQ L Sbjct: 86 LKADKYEWLLQKCTELGASHFIPVQMDRSIVKLNQNKIEKKLVRWNKIVKEAAEQSYRLI 145 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL----HAIAHIPNVAILIGPEG 198 +P + L+ + N D ++ A E E + +L + I+ GPEG Sbjct: 146 IPTFEFISNLKQVYVNIDKYDYVLVAYEDAAKEGEISQLKKTLQQFQSGNRILIVFGPEG 205 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G EE + + LG RILR++TA + A++ + Sbjct: 206 GLSEEEVALFQGNSEI--VGLGKRILRAETAPLYALSAI 242 >gi|183983662|ref|YP_001851953.1| hypothetical protein MMAR_3682 [Mycobacterium marinum M] gi|183176988|gb|ACC42098.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 253 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-Y 84 GD+ + A V R++ G+ ++L +G G+ R VE+ +R +Q + Sbjct: 22 GDEGFHAATVRRIRPGEQLVLGDG-----------AGELARCVVEHAARDGLTARVLQRW 70 Query: 85 IFSPI-----------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRV 127 +P+ K+ R + ++ + E G A R V + R Sbjct: 71 SVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADKGLRRW 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAI 184 R+ SAA Q +P + + L++ Q +V A ++ ++ A+ Sbjct: 131 RSAARSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVDT--AV 188 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A ++ +++GPEGG EE + L V+ + LGP +LR+ T Sbjct: 189 AQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTST 231 >gi|203287810|ref|YP_002222825.1| uncharacterized protein conserved [Borrelia recurrentis A1] gi|201085030|gb|ACH94604.1| uncharacterized protein conserved [Borrelia recurrentis A1] Length = 242 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 19/217 (8%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 YHYL +V R++ GD + + GK S+I S IRF + + ++ S Sbjct: 24 YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFEIDIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RVRTYTI--SAAEQCDI 140 +K +LD +++ VE+G+ +I ++ +MD ++R I A +Q Sbjct: 84 NLKGRKLDLSLRQVVEIGVNSIN-IVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGN 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P I + + N + ++ D EN I+ + ILIGPEG Sbjct: 143 AQIPSINFYNDFFSIPYSSSVNYYVAYSKGDFLHLGEN-------ISVFGKIGILIGPEG 195 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + E + L F + ILR+DTA V A+A Sbjct: 196 CFSKLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231 >gi|254526209|ref|ZP_05138261.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus str. MIT 9202] gi|221537633|gb|EEE40086.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus str. MIT 9202] Length = 257 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 33/234 (14%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 S ++ HYL V+R+K G I + NG+ W K+I+ K + + K+ Y Sbjct: 25 SKEEAHYLNKVMRIKNGKEIFITNGEGSLW--------KAIKVKNDCLEIIKLKKP---Y 73 Query: 85 IFSP-----------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYT 131 +F I + + +++ E+G+ I+P+ + N + N R +R + Sbjct: 74 LFQEQEIYLLGIAVVIPKSGFEDILKMCTEIGIDYIQPLFSERQVNKNLNFSRKLLRWNS 133 Query: 132 I--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSENS-LEKLHAIA 185 I A EQ + L P I + LK+ D+ ++ + +E N L K A Sbjct: 134 IIKEAVEQSERLWKPSILNGMDIIKWLKSRDNQERVSISITREEPPYDLNKWLRKQQEFA 193 Query: 186 HIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +IGPEGG+ S+E + + +T + L ILR+ TA++ A +++ Sbjct: 194 NKKGGIFWNVIGPEGGWSSKEIDFFNK-NNITFVKLSDTILRTSTASINASSIL 246 >gi|194396708|ref|YP_002038374.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae G54] gi|194356375|gb|ACF54823.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 247 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A++ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVSGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|228477933|ref|ZP_04062546.1| ribosomal RNA small subunit methyltransferase E [Streptococcus salivarius SK126] gi|228250326|gb|EEK09571.1| ribosomal RNA small subunit methyltransferase E [Streptococcus salivarius SK126] Length = 247 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 16/236 (6%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V+ P+ IK + D ++ +V+R+ E D ++L + L++++ I +E Sbjct: 10 VENPVIIKDK-----DTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHIFEVIED 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMD 125 + + V K ++LD + QK+ E+G AI V+ + D Sbjct: 65 LNDNVEMPVSVTIASGFPKGDKLDLVTQKATELGAQAIWAFPADWSVVKWDGKKLAKKED 124 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAI 184 ++ + AAEQ +P + L D+ +I A E L L + Sbjct: 125 KLAKIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELATLAREL 184 Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + N + + GPEGG E + + + LGPRI+R++TA + A++ V Sbjct: 185 VQVENSQKILFIFGPEGGISPSEIDVFEEAGGLK-IGLGPRIMRTETAPLYALSSV 239 >gi|167464493|ref|ZP_02329582.1| hypothetical protein Plarl_18376 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 163 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ T + GD H+L V+R + G+ I++ +G E L++I+ V K++ Sbjct: 1 MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R T + +Q ++ + K ++++ +IQK E+G P ++ T + Sbjct: 61 TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI 146 R + AAEQ +P + Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVV 148 >gi|332358563|gb|EGJ36387.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 250 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 11/225 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KEGD + L + L+++ + VE + + V Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQSLEIVEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G AI ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENSLEKLHAIAHI---PNVAILIGP 196 +P + L IV A +E+ + S + A++ + V + GP Sbjct: 140 NLIPEVRLFEKKSDFLNQLAQFGTIVVAYEESAKAGESAALVRALSGLEAGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 EGG EE V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLS 243 >gi|225861586|ref|YP_002743095.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae Taiwan19F-14] gi|225727552|gb|ACO23403.1| protein YqeU [Streptococcus pneumoniae Taiwan19F-14] gi|327389950|gb|EGE88295.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA04375] gi|332200328|gb|EGJ14401.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA47368] Length = 247 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 29/231 (12%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------V 82 ++ V+R+KE D + L+F+ DG + +++ V VE + ++ D V Sbjct: 23 KHMFQVMRLKEDDEVTLVFD--DG--IKRLARV-----LDVEARQFELVEELDDNVELPV 73 Query: 83 QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 Q S K ++L+++ QK E+G I ++ + ++++ + A Sbjct: 74 QVTISSGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGA 133 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAIL 193 AEQ +P I L D I+ A E E L A+ + A L Sbjct: 134 AEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKL 193 Query: 194 I---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG E E+ + V LGPRILR++TA + A++ + + Sbjct: 194 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|149011364|ref|ZP_01832611.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae SP19-BS75] gi|237649845|ref|ZP_04524097.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI 1974] gi|237820772|ref|ZP_04596617.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI 1974M2] gi|147764354|gb|EDK71285.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae SP19-BS75] Length = 247 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L AI + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAITGLDTGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|332074131|gb|EGI84609.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA41301] Length = 247 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L AI + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAITGLDTGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|119962358|ref|YP_947974.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter aurescens TC1] gi|119949217|gb|ABM08128.1| putative protein of unknown function (DUF558) [Arthrobacter aurescens TC1] Length = 255 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 21/235 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + V R+ G+ + + +G + G S V+ +Q +V+ + Sbjct: 26 GAEARHAVTVKRLTTGEPVDIADGAGVRLTGTVVDAGSST-LTVKASEVLFEEQPEVRLV 84 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + K +R + I+ + E+G+ A+ P I R+ + + ++ +AA+Q Sbjct: 85 LVQALAKGDRDELAIETATELGIDAVIPWQSERAIVRWKGERAAKAHAKWQSVVTAAAKQ 144 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEK-LHAIAHIPN------ 189 +P + L K D + I+ ++ ++N L L +A +PN Sbjct: 145 ARRAWIPEVRSIVDTVALAKAVADADMAIILHED---AKNPLRTVLEELAALPNEGKPRE 201 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L VT L LG +LRS TA AA+ L + G W Sbjct: 202 VLLIVGPEGGISPREVTRLSDSGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 255 >gi|329770528|ref|ZP_08261906.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325] gi|328836277|gb|EGF85946.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325] Length = 249 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 19/238 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64 +++ FV+ + ++ + S + +++ V+R D + + + +++ I + + + Sbjct: 1 MQQYFVNKNFNLNSEYELSKEDSNHIVRVMRKNINDKVFIVFNDEIKYICNIIDNNIDRV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 I E S ++ + P+K ++++Y++QK E+G+ I R + Sbjct: 61 IVEPFEKVEESNELKTKITVAIPPLKNDKIEYLLQKLTELGVFNIILFNSERNIAKIKAD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSE 175 + + R AAEQ +P + +L+ L+ N D+ + + E+ Sbjct: 121 KINSKLKRWDKILKEAAEQSKRNIIPTLSYVNSLQELINTTTNMDYKV-VAYEKESHNKN 179 Query: 176 NSLEKLHAIAH--IPNVAIL--IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 N E L A+ + N +I+ G EGG E L F +SLG RILR++TA Sbjct: 180 N--ENLKALLKDDLNNKSIIAVFGSEGGISENEINILTKSEF-KMVSLGKRILRAETA 234 >gi|322390789|ref|ZP_08064299.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321142459|gb|EFX37927.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 247 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 19/226 (8%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQYIFS 87 ++ V+R+KE D + L+F+ DG + +++ V K+E + + + VQ + Sbjct: 23 KHMFQVMRLKEDDEVTLVFD--DG--IKRLARVVNVEARKLELIEELADNVELPVQVTIA 78 Query: 88 P--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 79 SGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSK 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195 +P I L +D +IV A E E ++ L + + + G Sbjct: 139 RNLVPSITLFEKKADFLAQFDQFDRIVVAYEESAKEGEAAALIQSLTGLEAGCKLLFIFG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 PEGG E ++ + V LGPRILR++TA + A++ V + Sbjct: 199 PEGGLSPAEIKSFTAKGAVLA-GLGPRILRAETAPLYALSAVSVVT 243 >gi|319945702|ref|ZP_08019953.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC 700641] gi|319748062|gb|EFW00305.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC 700641] Length = 249 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNFV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199 P I L D +IV A E E ++ + + V + GPEGG Sbjct: 143 PSITLFEKKADFLAQLDQFDRIVVAYEESAKEGESAALVQAVSGLEKGSKVLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + LGPRILR++TA + A++ V + Sbjct: 203 LSPAEIESFEA-KGAALAGLGPRILRAETAPLYALSAVSVVT 243 >gi|168492597|ref|ZP_02716740.1| protein YqeU [Streptococcus pneumoniae CDC0288-04] gi|183573256|gb|EDT93784.1| protein YqeU [Streptococcus pneumoniae CDC0288-04] Length = 247 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 29/231 (12%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------V 82 ++ V+R+KE D + L+F+ DG + +++ V VE + ++ D V Sbjct: 23 KHMFQVMRLKEDDEVTLVFD--DG--IKRLARV-----LDVEARQFELVEELDDNVELPV 73 Query: 83 QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 Q S K ++L+++ QK E+G I ++ + ++++ + A Sbjct: 74 QVTISSGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGA 133 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAIL 193 AEQ +P I L D I+ A E E L A+ + A L Sbjct: 134 AEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKL 193 Query: 194 I---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG E E+ + V LGPRILR++TA + A++ + + Sbjct: 194 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|307707102|ref|ZP_07643899.1| RNA methyltransferase family protein [Streptococcus mitis SK321] gi|307617628|gb|EFN96798.1| RNA methyltransferase family protein [Streptococcus mitis SK321] Length = 247 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 15/224 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88 ++ V+R+KE D + L + L+++ V ++ +F++ + + VQ + Sbjct: 23 KHMFQVMRLKEDDEVTLVFDDGVKRLARVLDV-EARQFEL-VEELDDNVELPVQVTIASG 80 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I + ++ + ++++ + AAEQ Sbjct: 81 FPKGDKLEFITQKVTELGASQILAFPSDWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197 +P I L D IV A E E L+ + + + + GPE Sbjct: 141 VVPSIQLFENKADFLAQLDQFDSIVVAYEESAKEGEAAALLQAVTGLETGGKLLFIFGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG E E+ + V LGPRILR++TA + A++ + + Sbjct: 201 GGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243 >gi|290960538|ref|YP_003491720.1| hypothetical protein SCAB_61581 [Streptomyces scabiei 87.22] gi|260650064|emb|CBG73180.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 246 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 21/232 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQSD 81 G + + V R++ G++++L +G+ G W+ + + + V + Sbjct: 22 GPEGRHAVSVKRLQPGEDVVLTDGR-GRWVEGVVKAAEGKDRLVVMDVGCLYEEPPAEPR 80 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAA 135 + + + K +R + ++ E+G+ AI P IT++ + + R A Sbjct: 81 LTVVQALPKGDRGELAVETMTEVGIDAIVPWAAARCITQWRGERGLKALAKWRATAREAG 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAI 192 +Q P + T + + +V AD S ++ A A +P + + Sbjct: 141 KQSRRTRFPEVADAATSKQV------AALLVKADFAAVLHESGDETLATAELPAAGEIVL 194 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG EE L LGP +LR+ TA AA AL+ G W Sbjct: 195 VVGPEGGVSPEEL-ALFGEAGAGAYRLGPSVLRTSTAGTAAGALLLGRTGRW 245 >gi|300780715|ref|ZP_07090569.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532422|gb|EFK53483.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 27/236 (11%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKD-------GEWLSKISYVGKSIRFKVEYQSR 74 G+ G + + V R++ G++I+L +G E K S VG+ +R Q R Sbjct: 14 GRLDGPEGRHAVTVKRIEPGEHIMLIDGSGRTAEISVTEITGKDSLVGEVVRVDDVPQPR 73 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 + V + + K+ R + + +V+ G I P I+ T N+++ + Sbjct: 74 PR-----VTVVQAIPKSERAELAVDLAVQGGADEIIPWISHRTIARWQGPKVAKNVEKWQ 128 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 AA+Q +P + P T L + + V ++ S ++ + Sbjct: 129 ATAREAAKQSRRAWVPEVREPVTTNQLAELVRGHAAYVLHEDASTSIKDID-----LDVD 183 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG +E L +P + +S+GP +LR+ +AA+AA++ + A+ W Sbjct: 184 HLYLIVGPEGGIGQKE---LAGIPAAS-ISMGPEVLRTASAALAALSAIGALTHRW 235 >gi|239917736|ref|YP_002957294.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC 2665] gi|281413769|ref|ZP_06245511.1| hypothetical protein MlutN2_00947 [Micrococcus luteus NCTC 2665] gi|239838943|gb|ACS30740.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC 2665] Length = 253 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 25/237 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 G + + A +R+ G+ ++L +G G L+ G S+R + + T Sbjct: 25 GGPEARHAAAAMRLAPGETVILADGSGTLGHGTVLAAAPD-GVSVRLDAVAEEPAPTPA- 82 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAA 135 + + + K +R +Q +VE+G+ A+ P I R+ + T AA Sbjct: 83 -LVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWADTARAA 141 Query: 136 EQCDILT-LPFI---YPPTTLEFLLKNWDHNCQIVFA---DETCG-SENSLEKLHAIAHI 187 + +P + T + L+++ D ++V D G S E+L A I Sbjct: 142 AKQARRARVPAVRDHVSGTAVAGLVRD-DGGGRLVLVLHEDVEHGVSSVPAERLSEAAEI 200 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A+++GPEGG E E + V P+ LGP +LR+ TA AA+A++Q G W Sbjct: 201 ---AVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253 >gi|302528840|ref|ZP_07281182.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437735|gb|EFL09551.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 245 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 19/243 (7%) Query: 17 CIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----GKSIRFKVE 70 + +G+A G++ + A V R++ G+ ++L +G + V S+ V Sbjct: 8 AVPAEGRALLDGEEARHAATVRRLRVGEQLVLSDGAGAMARCAVDAVEAGRAASVTLTVL 67 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-- 123 + + + V + K +R + ++ + E G AI P + R+ Sbjct: 68 ERWQEEPPALRVHVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWDDGPRGEKA 127 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R R SAA+Q +P + P T E + +V G + L L Sbjct: 128 LARWRATARSAAKQARRAHVPAVAEPVGTRELAQLAATMSATLVL---ESGVASKLADL- 183 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 A+ ++ +++GPEGG EE L T + LGP +LR+ TAA A+ + + G Sbjct: 184 ALPDGGDLLLVVGPEGGITDEELALLEE-SGATTVRLGPTVLRTSTAAAVALGALGVLTG 242 Query: 243 DWY 245 W+ Sbjct: 243 RWH 245 >gi|257055398|ref|YP_003133230.1| hypothetical protein Svir_13560 [Saccharomonospora viridis DSM 43017] gi|256585270|gb|ACU96403.1| conserved hypothetical protein TIGR00046 [Saccharomonospora viridis DSM 43017] Length = 243 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 25/235 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDG--EWLSKISYVGK--SIRFKVEYQSRSQTKQSD 81 G++ H+ V R++EG+ + L +G+ G + ++ + G+ ++ +VE Sbjct: 17 GEEAHHAVTVRRLREGERLALSDGRGGLADCVAHAVHPGRNPTVELRVETTRHVSAPALR 76 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH--YNMDRVRTYTISA 134 V + K +R + ++ + E G+ A+ P + R+ + + R +A Sbjct: 77 VTVAQALAKGDRGELAVETATEAGVDAVVPWRAARSVARWDDGPRGAKALAKWRATARAA 136 Query: 135 AEQCDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A+Q +P + P TT + + + + +V + S ++ + ++ Sbjct: 137 AKQARRAWVPEVTEPMTTRQLAARIAETDLALVLDGDASESFVDVD----FPEEGELLLV 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTP----LSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG EE+ T FV + LGP +LR+ TAA A+ + A+ W Sbjct: 193 VGPEGGVAPEERAT-----FVEAGARCVRLGPTVLRTSTAATVALGALGALTARW 242 >gi|224532070|ref|ZP_03672702.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511535|gb|EEF81941.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 238 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 37/163 (22%) Query: 100 KSVEMGMGAIRPVITR-------------------------YTQNTHYNMDRVRTYTISA 134 K + + +G IRP++ R Y + + + + I+ Sbjct: 73 KKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKHLIAG 132 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENSLEKLHAIAHIPNV 190 A Q + LP I ++KN + Q + F + +NS + L I I N Sbjct: 133 AMQGGVTYLPKIK-------IMKNLKDSLQYIKQENFEIKILLEKNSKKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 I++GPE G+ +EK+ + F +P ++ ILR++TA +AA Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SPYNISSNILRTETAIIAA 227 >gi|112789921|gb|ABI21599.1| Smu10A [uncultured organism] Length = 185 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 11/163 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTIS--AAEQCDILT 142 K +R + ++ + E G+ A+ P + R+ + R+R + AA+Q Sbjct: 27 KGDRGELAVELATEAGVDAVVPWQASRCVARWPDAAKADKGRLRWQAAASEAAKQSRRYV 86 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P + + + E+ + + L A ++ +++GPEGG Sbjct: 87 VPEVLPAASTAGVAALVGQAALALVLHESATASLASTALPATG---DLVLIVGPEGGIAG 143 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 +E ++ + + LGP++LR+ TAA A+ + + G W Sbjct: 144 DELAAFEAVGAIA-VRLGPQVLRTSTAAAVALGAIGVLTGRWV 185 >gi|269114999|ref|YP_003302762.1| hypothetical protein MHO_2250 [Mycoplasma hominis] gi|268322624|emb|CAX37359.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 220 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 13/151 (8%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD----RVRTYTISAAEQCDILTLP 144 IK N + +QK+VE+G I ++Y ++ N D R A +Q +P Sbjct: 76 IKQNHFEIALQKAVELGAYEIYVFQSQYVDKSNLNFDSKKQRYEKIIFEACQQSFRNYIP 135 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 ++ P + L C + ++ EN + I + I++GPEGG+ +E Sbjct: 136 RLHDPISFSEL-------CVLDIKNKVLAYENK-KNNELIKDCQDALIIVGPEGGFSQQE 187 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + S V +SL ILR++TA + ++ Sbjct: 188 IDYAISCN-VQVVSLTKTILRAETALIYMLS 217 >gi|148997824|ref|ZP_01825388.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP11-BS70] gi|168575040|ref|ZP_02721003.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|307068392|ref|YP_003877358.1| hypothetical protein SPAP_1772 [Streptococcus pneumoniae AP200] gi|147756323|gb|EDK63365.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP11-BS70] gi|183578834|gb|EDT99362.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|306409929|gb|ADM85356.1| Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae AP200] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|225859537|ref|YP_002741047.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae 70585] gi|225720580|gb|ACO16434.1| protein YqeU [Streptococcus pneumoniae 70585] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 11/155 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A++ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVSGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E E+ + V + LGPRILR++TA + A+ Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYAL 236 >gi|149002075|ref|ZP_01827029.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP14-BS69] gi|303254708|ref|ZP_07340810.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455] gi|303258717|ref|ZP_07344697.1| hypothetical protein CGSSp9vBS293_06299 [Streptococcus pneumoniae SP-BS293] gi|303261881|ref|ZP_07347827.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae SP14-BS292] gi|303263744|ref|ZP_07349666.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae BS397] gi|303265722|ref|ZP_07351621.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae BS457] gi|303268575|ref|ZP_07354367.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae BS458] gi|147759884|gb|EDK66874.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP14-BS69] gi|301802477|emb|CBW35235.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302598420|gb|EFL65464.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455] gi|302636964|gb|EFL67453.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae SP14-BS292] gi|302640218|gb|EFL70673.1| hypothetical protein CGSSpBS293_06299 [Streptococcus pneumoniae SP-BS293] gi|302641854|gb|EFL72209.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae BS458] gi|302644849|gb|EFL75097.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae BS457] gi|302646782|gb|EFL77007.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae BS397] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|322373766|ref|ZP_08048301.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150] gi|321277138|gb|EFX54208.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V+ P+ IK + D ++ +V+R+ E D ++L + L++++ + +E Sbjct: 10 VENPVIIKDK-----DTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHVFEVIED 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMD 125 + + V K ++L+ + QK+ E+G AI V+ + D Sbjct: 65 LTDNVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWAFPADWSVVKWDGKKLAKKED 124 Query: 126 RVRTYTISAAEQCDILTLPFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSL---- 178 ++ + AAEQ +P + EFL L N+D +I A E L Sbjct: 125 KLAKIALGAAEQSKRNHVPEVRLFEEKGEFLSELANFD---KIFIAYEETAKAGELATLA 181 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +L + H + + GPEGG E + V + LGPRI+R++TA + A++ V Sbjct: 182 RELAQVEHGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSSV 239 >gi|168486375|ref|ZP_02710883.1| protein YqeU [Streptococcus pneumoniae CDC1087-00] gi|183570623|gb|EDT91151.1| protein YqeU [Streptococcus pneumoniae CDC1087-00] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E E+ + V + LGPRILR++TA + A++ Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALS 237 >gi|148994979|ref|ZP_01823957.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae SP9-BS68] gi|168488515|ref|ZP_02712714.1| protein YqeU [Streptococcus pneumoniae SP195] gi|147926916|gb|EDK77963.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae SP9-BS68] gi|183572849|gb|EDT93377.1| protein YqeU [Streptococcus pneumoniae SP195] gi|332072601|gb|EGI83084.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA17570] Length = 247 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLTQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|328945350|gb|EGG39503.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 250 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+KE + + L + L+++ G+ VE + + V Sbjct: 20 DTAKHMFSVMRLKEDEQVTLVFDDGVKRLARVLDPGQQSLEIVEELADNTELPVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G A+ ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGACALWGFPAEWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGP 196 +P + L +I+ A E E + L + V + GP Sbjct: 140 NLIPEVRLFDKKADFLAALAAFDRIIVAYEESAKEGETAALVRALSGLETGAKVLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 EGG S+E H V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSSDEIAAFHQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242 >gi|326333962|ref|ZP_08200192.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium Broad-1] gi|325948241|gb|EGD40351.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium Broad-1] Length = 247 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 18/233 (7%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKV-EYQSRSQTKQ 79 + SGD+ H+ V R++ G+ ++L +G GE ++ KS+ +V E + Sbjct: 21 EVSGDEGHHAVVVRRLRVGEEVVLTDGA-GEGVTGTITQTTKKSMTVRVDEIIIGDAPPE 79 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTIS 133 + + + K +R + ++ E+G A R V + ++ R R Sbjct: 80 PSLTVVQALPKGDRGELAVEMVTEIGAARIVPWAAARSVAVWKGERAVKSLARWRATARE 139 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 AA+Q L P + P T + ++ + V E E +L L A+ I +IL Sbjct: 140 AAKQSRRLWHPEVEPLATTDAVVAMIEAADVAVVLHE----EGTL-PLGAVPVIDEGSIL 194 Query: 194 I--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + GPEGG +E L T + LG +LR+ TA VAA A + A W Sbjct: 195 VVVGPEGGLTVDEI-ALFEKAGATTIRLGGEVLRTSTAGVAACAALLARTRRW 246 >gi|169834515|ref|YP_001695156.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae Hungary19A-6] gi|168997017|gb|ACA37629.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|124514677|gb|EAY56189.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 282 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 20/225 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SDVQYIF 86 +L LR KEGD+ + + G + K++ +S +++ + +F Sbjct: 35 RHLLSSLRAKEGDSFPFSDPETGTIYRGTLVSREPCSLKLDIESGRISRKHFFPRLGIVF 94 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTI--SAAEQCD 139 SP+K + + +V G+ ++PVI+ R+ + + R I ++ Sbjct: 95 SPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWPEGDGWASKAKRFAGIVREKSQLAG 154 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------NVAI 192 T I P +L LKN + + F +++ G+ + ++ + ++ P + Sbjct: 155 RATRMRIASPLSLRESLKNRASDVFLWFDEDSAGALDPMKAIDSLRRFPIQFWEQKTIWS 214 Query: 193 LIGPEGGYHSEEKETLHSLP---FVTPLSLGPRILRSDTAAVAAM 234 ++GPEGG+ +++ L V +SLG RI + A + A+ Sbjct: 215 VVGPEGGWSPRDRDCLRDPEEKGSVFRISLGERIFSGEMALLTAI 259 >gi|221232521|ref|YP_002511674.1| hypothetical protein SPN23F_17940 [Streptococcus pneumoniae ATCC 700669] gi|298230706|ref|ZP_06964387.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255499|ref|ZP_06979085.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503511|ref|YP_003725451.1| hypothetical protein HMPREF0837_12009 [Streptococcus pneumoniae TCH8431/19A] gi|220674982|emb|CAR69559.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|298239106|gb|ADI70237.1| protein of hypothetical function DUF558 [Streptococcus pneumoniae TCH8431/19A] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|118466945|ref|YP_881243.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium 104] gi|118168232|gb|ABK69129.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 253 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 17/216 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 GD+ + A V R++ G+ ++L +G G ++ + G+ +R +V + V Sbjct: 21 GGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRARVLERWTVAPPNPPVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + ++ + E G A R V + + R R +AA Q Sbjct: 81 VVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDKGLRRWRAVAKAAARQ 140 Query: 138 CD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH--AIAHIPNVAI 192 I T+ + +L +++ +V A E++ ++L +A ++ + Sbjct: 141 SRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALH----ESATDRLTDVPVAQAKSLFL 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +IGPEGG +E L ++ + LGP++LR+ T Sbjct: 197 VIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231 >gi|15901610|ref|NP_346214.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae TIGR4] gi|111657308|ref|ZP_01408070.1| hypothetical protein SpneT_02001479 [Streptococcus pneumoniae TIGR4] gi|116515693|ref|YP_817025.1| hypothetical protein SPD_1572 [Streptococcus pneumoniae D39] gi|149006564|ref|ZP_01830263.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae SP18-BS74] gi|14973278|gb|AAK75854.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] gi|116076269|gb|ABJ53989.1| conserved hypothetical protein TIGR00046 [Streptococcus pneumoniae D39] gi|147761862|gb|EDK68825.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae SP18-BS74] gi|332072939|gb|EGI83420.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA17545] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|148990495|ref|ZP_01821636.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae SP6-BS73] gi|147924253|gb|EDK75349.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae SP6-BS73] Length = 247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|15903649|ref|NP_359199.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae R6] gi|182684729|ref|YP_001836476.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14] gi|15459275|gb|AAL00410.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|182630063|gb|ACB91011.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14] Length = 251 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 87 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 146 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 147 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 206 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 207 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 247 >gi|123965976|ref|YP_001011057.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9515] gi|123200342|gb|ABM71950.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. MIT 9515] Length = 259 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 15/233 (6%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 K + ++ HYL V+R+K G I + NG+ W +K ++ Q K+ Sbjct: 23 KLTKEEAHYLNKVMRIKIGREIFITNGQGSLWKAKKLEQNFLEINNIDNPYFVQEKEKVS 82 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT--RYTQNTHYNMDRVRTYTI--SAAEQC 138 I + N + +++ E+G+ I+P+ + + N+++ +R +I A EQ Sbjct: 83 LGIAVVVPKNGFEDILKMCTEIGIDLIQPLFSERQVKNNSNFLKRNIRWNSIINEAVEQS 142 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAIL-- 193 + L P I L + + D I + D++ + N K N +L Sbjct: 143 ERLWRPLILGGVNLIDWIDSRDSKDIISISITRDDSSENLNHWLKRKQNLLKKNGGVLWN 202 Query: 194 -IGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +GPEGG+ E E + + FV L ILR+ TA V A +++ D Sbjct: 203 VVGPEGGWSRNEIEFFLKNKISFV---KLSETILRTSTATVNATSILNQWRND 252 >gi|218249710|ref|YP_002374593.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] gi|226322026|ref|ZP_03797551.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|218164898|gb|ACK74959.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] gi|226232616|gb|EEH31370.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 238 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 I+ A Q I LP I L+ LK Q F + +NS + L I I N A Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAA 186 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 I++GPE G+ +EK+ + F +P S+ LR++TA +AA Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227 >gi|195941801|ref|ZP_03087183.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a] gi|216264321|ref|ZP_03436313.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221217508|ref|ZP_03588979.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223889140|ref|ZP_03623729.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224533029|ref|ZP_03673635.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|225549337|ref|ZP_03770310.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225549765|ref|ZP_03770730.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|226320766|ref|ZP_03796322.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|215980794|gb|EEC21601.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221192786|gb|EEE19002.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223885389|gb|EEF56490.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224512023|gb|EEF82418.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|225369725|gb|EEG99173.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370195|gb|EEG99635.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|226233821|gb|EEH32546.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|312148337|gb|ADQ30996.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 238 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 I+ A Q I LP I L+ LK Q F + +NS + L I I N A Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAA 186 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 I++GPE G+ +EK+ + F +P S+ LR++TA +AA Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227 >gi|312149666|gb|ADQ29737.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 238 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 I+ A Q I LP I L+ LK Q F + +NS + L I I N A Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAA 186 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 I++GPE G+ +EK+ + F +P S+ LR++TA +AA Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227 >gi|227488406|ref|ZP_03918722.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51867] gi|227543018|ref|ZP_03973067.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51866] gi|227091620|gb|EEI26932.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51867] gi|227181240|gb|EEI62212.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51866] Length = 240 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 19/210 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83 SG + + V R+ G+ ++L +G G + ++ GK + V+ SR + + Q Sbjct: 20 SGPEGRHAVTVKRIGPGEIVMLADGHGGRSVGTVTATQGKDV-LHVDVTSREEVPPPNPQ 78 Query: 84 Y--IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136 I + K+ R + + + G I P I ++ + ++AA+ Sbjct: 79 VTVIQALPKSERQELTVDLLTQGGADVIVPWEAERCIAKWQPKKAKKWE---NAAVAAAK 135 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q LP I P L+ L D +V +E ++ ++ + +A++IGP Sbjct: 136 QSRRARLPLITKPNALDEALDGVD--LVLVLHEEASVPLAEVD----LSQVRRIALVIGP 189 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 EGG E E + P+ LGP +LR+ Sbjct: 190 EGGLSPAEVERFRAA-GARPVLLGPEVLRT 218 >gi|29832115|ref|NP_826749.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces avermitilis MA-4680] gi|29609233|dbj|BAC73284.1| putative protein involving differentiation [Streptomyces avermitilis MA-4680] Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 19/232 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQT--KQSD 81 G + + V R++ G++++L +G G W + GK R V+ S ++ ++ Sbjct: 23 GAEGRHAVSVKRLRPGEDVVLTDGA-GRWADCVVLGTEGKD-RLIVQMDSVTEEPPEEPR 80 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAA 135 + + + K +R + ++ E G+ AI P IT++ + + + R+ A Sbjct: 81 ITVVQALPKGDRGELAVETMTETGVDAIVPWAAARCITQWKGDRGQKALAKWRSTAREAG 140 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAI 192 +Q + P + T + + E +E+ E A A +P ++ + Sbjct: 141 KQSRRVRFPEVAGAMTSKQVAALLATADLAAVLHED--TEHGTEPF-ATAQLPTSGSIVL 197 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG EE E + T LG +LR+ TA A AL+ A G W Sbjct: 198 VVGPEGGISPEEIELFTGVGAKT-FHLGRTVLRTSTAGTVATALLLARTGRW 248 >gi|195943133|ref|ZP_03088515.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a] Length = 231 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 42/228 (18%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 YH+L +V R+K+GD NILL KD E S+I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 S +K ++D ++++ VE+G+ I R V N + R A +Q Sbjct: 81 FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140 Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P F Y P + H ++ L K + + + Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFAKIG 189 Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 I+IGPEG + E ++ + + F TP ILR+DTA + ++ Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSL 231 >gi|123968258|ref|YP_001009116.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. AS9601] gi|123198368|gb|ABM70009.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. AS9601] Length = 257 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 19/227 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80 S ++ HYL V+R+K G I + NG+ W K + V I+ K Y + Q + Sbjct: 25 SKEEAHYLNKVMRIKNGKKIFIANGEGSLW--KATKVKNDCLEIIKSKKPYLIQEQ--EI 80 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYTI--SAAE 136 + I I + + +++ E+G+ I+P+ + N + N R +R I A E Sbjct: 81 HLLGIAVVIPKSGFEDILKMCTEIGIDYIQPLFSERQVNKNLNFSRKLLRWNLIINEAVE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENS-LEKLHAIAHIPNVAI 192 Q + L P I + LK+ D+ ++ + +ET N L K + Sbjct: 141 QSERLWKPSILNGMDIIEWLKSRDNQERLSISITREETLYDLNQWLRKQQEFGNKKGGIF 200 Query: 193 --LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGG+ +E + +T + L ILR+ TA++ A +++ Sbjct: 201 WNVIGPEGGWSDKEIDFFKK-NNITFVKLSDTILRTSTASINASSIL 246 >gi|256847109|ref|ZP_05552555.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715773|gb|EEU30748.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 248 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 17/213 (7%) Query: 30 HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS- 87 H+ VLR + G L+F D E + + S + I + Q + V I + Sbjct: 25 HHFITVLRAEPGTQCELVF---DNEHVYRASLIDSKIAQVEVLEDLQQNAELPVHPILAC 81 Query: 88 --PIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 P + + ++QK+ E+G A R V T + R++ AAEQ Sbjct: 82 GLPKTKGKPELIVQKATELGADEVIFFEAARSVSHWATNKQTKKIARLQKIANGAAEQSH 141 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILIGP 196 LP I L +L+ ++V +E+ G ++L L + + GP Sbjct: 142 RNRLPQISYLPDLATVLQQTSAEQKVVAWEESAKQGETSALATVLQQTKSDDRMLAIFGP 201 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 EGG +E++ T V P+ LGPRILR++TA Sbjct: 202 EGGL-TEDEITQMQAAGVVPVGLGPRILRTETA 233 >gi|237721383|ref|ZP_04551864.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449179|gb|EEO54970.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 232 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR+ GD I L +GK + ++I+ F ++ Q Sbjct: 9 IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQE 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + +++ +R+ ISA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCHFSERKVIKTERIEKILISA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + + ++ + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GPEG + EE + FV P+SLG LR++TAA+ A Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLGKSRLRTETAALVA 223 >gi|323692756|ref|ZP_08106984.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323503198|gb|EGB19032.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 245 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 10/220 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 +G +++ +VLRMK G+ +L+ G++L + + I F + +S S+ + Sbjct: 19 TGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKILFGILEKSESEMELPARI 78 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136 ++F + K ++++ +IQK+VE+G I PV T+ ++ + R + SAA+ Sbjct: 79 HLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSKKEEARIKRWNAISESAAK 138 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q +P + + L+ D +++ + G E + L ++AI IG Sbjct: 139 QSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEETRRLLQTAEAGMDIAIFIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 PEGG+ EE V+ +SLG RILR++TA + ++ Sbjct: 199 PEGGFEEEEIRQAGERG-VSSVSLGRRILRTETAGLCVLS 237 >gi|50955092|ref|YP_062380.1| hypothetical protein Lxx14630 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951574|gb|AAT89275.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 241 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 23/244 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFK 68 D I + +G + + V R + G+ IL+ NG+ GE L G + Sbjct: 9 DLDAAIGDRLTLTGPEARHAVTVNRTRPGERILIGNGRGLVAAGEVLV---ATGSELTID 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN 123 V R Q ++ + + + K +R + IQ + E+G A+ P ++R+ + T Sbjct: 66 VAALDRIQRREPAITLVQALAKGDRDERAIQAATELGADAVIPWAAARSVSRW-EGTKIA 124 Query: 124 MDRVRTYTI--SAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R R TI A +Q P + TT + H +++ + + G L Sbjct: 125 KGRERWATIVREAGKQSLRPWTPEVGELSTTRQIAALAVTH--RVLVLEPSAG--GRLTD 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + A +A+++GPEGG E + + L LG ILR+ TA AA+A++ A Sbjct: 181 VTPDAR--PLALVVGPEGGIDPAELDVFRA-AGAELLRLGDTILRTSTAGPAALAVLSAA 237 Query: 241 CGDW 244 W Sbjct: 238 TRRW 241 >gi|295396065|ref|ZP_06806248.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971006|gb|EFG46898.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 259 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G N+ + + I + +++GPEGG E + L S T + LGP ILR+ TA Sbjct: 187 LGQGNTTQDNISQGDIDQIVVIVGPEGGITPAEIDALVSAGARTAV-LGPTILRASTAGP 245 Query: 232 AAMALVQAICGDW 244 A+A+VQ + G W Sbjct: 246 VALAIVQTLLGRW 258 >gi|325697805|gb|EGD39689.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK160] Length = 250 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 19/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84 D ++ V+R+K GD + L+F+ DG + +++ V S +E + + + VQ Sbjct: 20 DTAKHMFSVMRLKAGDQVTLVFD--DG--IKRLAQVLDSGHQSLEILEELADNTELPVQV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K ++L+++ QK+ E+G A+ ++ + +++ AAE Sbjct: 76 TIASGFPKGDKLEFITQKATELGACALWAFPADWSVAKWDGKKLGKKSEKLEKIAQGAAE 135 Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAI 192 Q +P + FL D + IV +E+ S A++ + V Sbjct: 136 QSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESAALFRALSGLEAGAKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + GPEGG +E + V+ LGPRILR++TA + A+ V + Sbjct: 196 IFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242 >gi|203284273|ref|YP_002222013.1| uncharacterized protein conserved [Borrelia duttonii Ly] gi|201083716|gb|ACH93307.1| uncharacterized protein conserved [Borrelia duttonii Ly] Length = 242 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 19/217 (8%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 YHYL +V R++ GD + + GK S+I S IRF + + + S Sbjct: 24 YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFAIDIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RVRTYTI--SAAEQCDI 140 +K +LD +++ VE+G+ +I ++ +MD ++R I A +Q Sbjct: 84 NLKGRKLDLSLRQVVEIGVNSIN-IVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGN 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P I + + N + ++ D EN I+ + ILIGPEG Sbjct: 143 AQIPSINFYNDFFSIPYSSSVNYYVAYSKGDFLHLGEN-------ISVFGKIGILIGPEG 195 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + E + L F + ILR+DTA V A+A Sbjct: 196 CFLKLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231 >gi|330469600|ref|YP_004407343.1| hypothetical protein VAB18032_28361 [Verrucosispora maris AB-18-032] gi|328812571|gb|AEB46743.1| hypothetical protein VAB18032_28361 [Verrucosispora maris AB-18-032] Length = 244 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 29/220 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + H+ A V R++ G+ +LL +G+ G + +S VG+ +E SR ++ + + Sbjct: 21 GPEGHHAATVQRLRVGEELLLGDGRGGTAAAVVSAVGRGT-LDIEITSRGYVDAANPRLV 79 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRTY------TISAAE 136 K +R + +Q E G+ I P + + DR VR AA+ Sbjct: 80 VVQGIAKGDRGELAVQAMTEAGVDEIVPWAAGRS-VAQWRGDRGVRARDKWVATAREAAK 138 Query: 137 QCDILTLPFIY-----PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-- 189 Q LP + P ++ + V +E ++E +P+ Sbjct: 139 QARRAWLPVVAGAPDEPTASVARRISG--AAAGYVLHEEATDRLTTVE-------LPDQG 189 Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +++GPEGG E T P+ LGP +LR+ T Sbjct: 190 EIVLVVGPEGGITPAELATFQQA-GAHPVRLGPSVLRTST 228 >gi|332199792|gb|EGJ13867.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA41317] Length = 247 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI---GPEGG 199 P I +FL + + IV +E+ + L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDFIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V + LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243 >gi|294812559|ref|ZP_06771202.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326440988|ref|ZP_08215722.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces clavuligerus ATCC 27064] gi|294325158|gb|EFG06801.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 247 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 24/233 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 G + + V R+ G+ I+L +G+ G + + GK ++ +V + + Sbjct: 24 GPEGRHAVSVRRLTSGEEIVLTDGQGRGAAGAVLRTEGKDTLVVEVRELRDEPAPRPRIT 83 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAEQ 137 + + K +R + ++ E G+ I P IT++ + ++ + R A +Q Sbjct: 84 VVQALPKGDRGELAVETMTETGVDTIVPWSAARCITQWRGERGAKSLAKWRATAREAGKQ 143 Query: 138 CDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVA 191 L P + T + LL D + E E L A A +P ++ Sbjct: 144 SRRLRFPEVADAATTKQVAALLAEADFAAVL--------HEEGAEAL-ATAELPAEGSIV 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE + + P LG +LR+ TA A +AL+ G W Sbjct: 195 LVVGPEGGVSPEELDAFAAA-GARPFRLGHSVLRTSTAGTAGVALLLGRTGRW 246 >gi|168494311|ref|ZP_02718454.1| protein YqeU [Streptococcus pneumoniae CDC3059-06] gi|225855212|ref|YP_002736724.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae JJA] gi|183575734|gb|EDT96262.1| protein YqeU [Streptococcus pneumoniae CDC3059-06] gi|225723849|gb|ACO19702.1| protein YqeU [Streptococcus pneumoniae JJA] Length = 247 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199 P I L D I+ A E E L+ + + + + GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGSKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|51245558|ref|YP_065442.1| hypothetical protein DP1706 [Desulfotalea psychrophila LSv54] gi|50876595|emb|CAG36435.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 255 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 20/228 (8%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT----KQSDVQYIF 86 ++ VLR + GD + + G ++KI + F V+ + +T ++ + + Sbjct: 26 HIVKVLRSQVGDRVRVGVIDGGRGMAKIVAIKPKFPFSVDLDIQLETTLPEEKPVIDLVL 85 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDIL 141 + + L ++ + +G+G I + ++ + + + ++ R + + EQ Sbjct: 86 ALPRPIMLRRILSQVTSLGVGRIFLIDSQRVEKSFWQASLLQNEQYREHLLIGLEQAVAT 145 Query: 142 TLP--FIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLH----AIAHIPNVAI 192 LP IYP E L+K+ D ++ AD G+ E L ++ V + Sbjct: 146 RLPEVSIYPKFKGFMDELLVKDLDDYSALIVAD-PAGTNTFSEALRQAGGSLRQGGRVLL 204 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +GPEGG+ E + F + ++G RIL+ DTA +A + + A+ Sbjct: 205 CVGPEGGWVPAEVDQFSGCGF-SICTIGERILKVDTAVIALHSRIMAL 251 >gi|325970602|ref|YP_004246793.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] gi|324025840|gb|ADY12599.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] Length = 239 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 30 HYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ +LR+KEG++ ++ GK L+ + + I F+ + K V + Sbjct: 23 QHICKILRLKEGESFQAGIINVGKGTATLTALEK--ERITFRFVLEETESAKLYPVTLLV 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQ---C 138 S ++ + ++++SV +G+ I T Y Q T Y + + A Q C Sbjct: 81 SQVRPICMRRILRESVSLGVERIILCTTETGEKSYAQATLYTSGEYHSILLDGAMQSGKC 140 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 + + F + LL + + Q + D E++ +A+ H +V + IG E Sbjct: 141 GVSAVQFAPSVASAMHLL---EQDSQRIVLDNV--RESTSLARYAL-HASSVVLAIGGER 194 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G+ E+ TL L + SLG RILR++TA A +A++ Sbjct: 195 GFTDNER-TLFDLNGFSFASLGSRILRTETACSAGLAVL 232 >gi|299148609|ref|ZP_07041671.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23] gi|298513370|gb|EFI37257.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23] Length = 232 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR+ GD I L +GK + ++I+ F ++ Q Sbjct: 9 IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGDFYKAEITVATNKRCFVNIKETIFQE 68 Query: 78 K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + + ++ + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 GPEG + EE + FV P+SL LR++TAA+ A Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLSKSRLRTETAALVA 223 >gi|269218584|ref|ZP_06162438.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211695|gb|EEZ78035.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848 str. F0332] Length = 287 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83 +G + H+ A V R G+ I + +G+ G + V K + +V R + Sbjct: 64 AGPEGHHAATVKRASPGEEIDVVDGRGGRARCAVVGVSKGEVELEVLGFEREPDPSPRIT 123 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-VITRYTQNTHYNMDRVR----TYTISAAEQC 138 + + K +R D ++ + E G+ I P R N ++ R + ++A++Q Sbjct: 124 LLQALAKGSRDDQAVETATEYGVWRIVPWASARAVANWKGKEEKARRRWESIVLAASKQS 183 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPNVAILIGPE 197 +P + T L+ + C E + A + N+ I++GPE Sbjct: 184 RRSWVPEVLDVCTTPQALRLASAEGADLL---VCHEEADMPIARAGLQGSKNLWIVVGPE 240 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALVQAICG 242 GG EE E+ + T L L P +LRS +A AVAA++ ++ G Sbjct: 241 GGLTQEEIESFERIGGRTVL-LSPNVLRSSSAGPFAVAALSGMRGSAG 287 >gi|332298871|ref|YP_004440793.1| Ribosomal RNA small subunit methyltransferase E [Treponema brennaborense DSM 12168] gi|332181974|gb|AEE17662.1| Ribosomal RNA small subunit methyltransferase E [Treponema brennaborense DSM 12168] Length = 286 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 48/259 (18%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSI---RFKVEYQSRSQT 77 +G + YL +VLR++ D+ L GE ++++ G ++ R + T Sbjct: 19 TGKDFRYLRNVLRLQP-DDTLDVRLSGGELCRMRVAEVKAAGSALVLERCGARSEGARAT 77 Query: 78 KQSDVQ-----------------YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 ++ V + F P K ++D +++++ E G+ I PV +Q + Sbjct: 78 AETGVPAGAIEGADGGVRAPLWLFQFMP-KAQKMDLIVRQAAETGVAVIVPVRGARSQKS 136 Query: 121 HYNMDRVRTYTI--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCG 173 R R I A +Q + P L+ L+ W C + +E+ G Sbjct: 137 DCIERRERWQRIVREARQQSGSPVETTVAEPLDLDGALRLWSGRCGARPCAVALYEESAG 196 Query: 174 ------------SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + + EK A A+ +G EGG +E + L F P+ Sbjct: 197 CLPLHSCAARMCASGTSEK--PTAPCTAAALAVGCEGGLSPDEIDVLQRAGFA-PVHFDT 253 Query: 222 RILRSDTAAVAAMALVQAI 240 ILR++TAA+ +A +Q I Sbjct: 254 NILRTETAALYGIAALQTI 272 >gi|225552017|ref|ZP_03772957.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371015|gb|EEH00445.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 12/151 (7%) Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILT 142 PI R+ I++ +G+ I T T+ ++ N + + + I A Q +I Sbjct: 84 PIVAKRI---IKELASIGIYKIFFFNTELTEKSYLNSKIFKNNDFKKHLIDGAMQGEITY 140 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP I L+ LK + Q F + +NS + L I I N AI++GPE G+ Sbjct: 141 LPKIKIMKNLKDSLK---YIQQENFEIKILLEKNSEKNLIDIEQINNAAIIVGPERGFTE 197 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +EK+ + F + S+ LR++TA +AA Sbjct: 198 KEKQLISQYNF-SSYSISTNTLRTETATIAA 227 >gi|307719330|ref|YP_003874862.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM 6192] gi|306533055|gb|ADN02589.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM 6192] Length = 190 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 8/129 (6%) Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 Y ++T + + AEQ +P + +LE + + V DE G Sbjct: 69 YLESTLWKGGEWERCLVEGAEQGVTTRVPEVVRVRSLEEGVGVCGEGVRYV-CDEAVGEG 127 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +A + +GPE G+ EE+ L FV LSLGPR+LR++ A A+ Sbjct: 128 GR------VARAGRYVVAVGPERGWTEEERRVLAEEGFVR-LSLGPRMLRAEVACHVAVG 180 Query: 236 LVQAICGDW 244 V G W Sbjct: 181 RVAEGAGWW 189 >gi|167740222|ref|ZP_02412996.1| hypothetical protein Bpse14_19318 [Burkholderia pseudomallei 14] Length = 148 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 29/125 (23%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARL------ 69 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R + D F P + +++D++I+K+VE+G+ A+ Sbjct: 70 ----VEIDKRGALARIDA---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 122 Query: 110 RPVIT 114 P+ T Sbjct: 123 APLST 127 >gi|328953124|ref|YP_004370458.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca acetoxidans DSM 11109] gi|328453448|gb|AEB09277.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca acetoxidans DSM 11109] Length = 261 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS-DV 82 S + H+L V+R+ GD + + +G + ++I S + R ++ + + S + Sbjct: 36 SPSESHHLIRVVRLAVGDRVEVSDGCGRIFEAEILSLEPTAARLRLLNELSVGIESSLKI 95 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTISAAEQ 137 + ++ D +I++ E+G+ + P + R + R + A + Sbjct: 96 TLGLALVRAEIFDSLIRQVTELGIYRLVPFTSTRSLVRPGGWKKSRLLRWQRLAQEALKS 155 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILI 194 L LP I PP L +++F +E + + H +A P + LI Sbjct: 156 SQRLILPEIDPPVDFPDALIG-PEEVKLMFWEE----QRQAHRPHDLAAWPRPRTIRALI 210 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG+ + E +T F L LGPR LR +TAA+AA+A++Q GD Sbjct: 211 GPEGGFTAAEADTARQAGFNL-LGLGPRRLRVETAALAAVAVLQYTWGD 258 >gi|167817439|ref|ZP_02449119.1| hypothetical protein Bpse9_20039 [Burkholderia pseudomallei 91] Length = 126 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRPV 112 R + + +++ Y + + +++D++I+K+VE+G+ A+ P+ Sbjct: 75 -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPL 125 >gi|206602521|gb|EDZ39002.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 287 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/234 (20%), Positives = 107/234 (45%), Gaps = 22/234 (9%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQ-SDVQYI 85 +L LR KEGD+ + + G + + + V + S++ V+ + ++T + + Sbjct: 35 RHLLSSLRAKEGDSFPFSDPETGT-IYRGTLVSREPCSLKLVVDSEHATRTHFFPRLGIV 93 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTI--SAAEQC 138 FSP+K + + +V G+ ++PVI+ R++++ ++ R I ++ Sbjct: 94 FSPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWSESEGWSSKAKRFAGIVREKSQLA 153 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------NVA 191 T I P +L+ LKN + + F ++ G+ + ++ + ++ + Sbjct: 154 GRTTRMHIASPLSLKESLKNRSSDVFLWFDEDPVGALDPMKVIDSLRRFSLQFWEQKTIW 213 Query: 192 ILIGPEGGYHSEEKETLHSLP---FVTPLSLGPRILRSDTAAVAAMALVQAICG 242 ++GPEGG+ ++++ L V +SLG R+ + A +A++ + G Sbjct: 214 SVVGPEGGWSPKDRDCLREPEEKGSVFRVSLGERVFSGEMALLASILFLGTFLG 267 >gi|291287910|ref|YP_003504726.1| hypothetical protein Dacet_2007 [Denitrovibrio acetiphilus DSM 12809] gi|290885070|gb|ADD68770.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM 12809] Length = 233 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 16/205 (7%) Query: 31 YLAHVLRMKEGDNIL--LFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 ++ +VL+ EG+ I + NG+ G+ + IS G ++ F+ E ++ + DV I + Sbjct: 25 HIRYVLKSAEGETIKAGILNGEIGKAVIEDISDSGVTVSFQPE---KAPPEACDVSLILA 81 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQCDILT 142 + ++ V G+ + + T Y Q+ + + + + Y + A QC Sbjct: 82 LPRPKAFRRILFGIVTAGVKDVHVINTWRVEKSYWQSPYLSDENINKYCLEALMQCRDTV 141 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I+ F ++ + T + A P A+ IGPEGG+ Sbjct: 142 MPDIH---FYRFFTDFFEEGLPTIPEKRTRFIAHPYGDSGAFVRSP-AAVAIGPEGGFID 197 Query: 203 EEKETLHSLPFVTPLSLGPRILRSD 227 E ET F TP SLG RIL ++ Sbjct: 198 RELETFIRAGF-TPFSLGERILTTE 221 >gi|324992255|gb|EGC24177.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK405] Length = 250 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQY 84 D ++ V+R+KEGD + L+F+ + +S+ E ++ Q + Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFDDSVKRLARVLDPSQQSLEILEELADNTELPVQVTIAS 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 F K ++L+++ QK E+G AI ++ + +++ AAEQ Sbjct: 80 GFP--KGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQS 137 Query: 139 DILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILI 194 +P I +FL D + IV +E G +L + + ++ + + Sbjct: 138 KRNLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAATLVQAVRGLSKGDKLLFIF 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GPEGG +E V+ LGPRILR++TA + A+ V + Sbjct: 198 GPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243 >gi|289676398|ref|ZP_06497288.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae FF5] Length = 60 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A LIGPEGG + E F LGPR+LR++TA V A+++ Q + GD+ Sbjct: 6 SLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVAQQLWGDF 60 >gi|116627096|ref|YP_819715.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus thermophilus LMD-9] gi|116100373|gb|ABJ65519.1| Uncharacterized protein conserved in bacteria [Streptococcus thermophilus LMD-9] gi|312277559|gb|ADQ62216.1| Ribosomal RNA small subunit methyltransferase E [Streptococcus thermophilus ND03] Length = 247 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 16/236 (6%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V+ P+ IK + D ++ +V+R+ E D ++L + L+++ + +E Sbjct: 10 VENPVIIKDK-----DTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVFEVIED 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMD 125 + + V K ++L+ + QK E+G AI V+ + D Sbjct: 65 LNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKLAKKED 124 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAI 184 ++ + AAEQ +P + L H +I A E L L + Sbjct: 125 KLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELATLAREL 184 Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + N + + GPEGG E + V + LGPRI+R++TA + A++ V Sbjct: 185 AKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSSV 239 >gi|119953152|ref|YP_945361.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae 91E135] gi|119861923|gb|AAX17691.1| hypothetical cytosolic protein [Borrelia turicatae 91E135] Length = 242 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%) Query: 29 YHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 YHYL V R+K GD + +L G++ + S I+ + + +V S Sbjct: 24 YHYLVDVRRVKVGDTLNVLLGGREVRFAEISSIDNNLIKLSTLKVEMLKKRDFEVSIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDIL 141 +K +LD +++ VE+G+ I V + R + + R A +Q Sbjct: 84 SLKGRKLDLSLRQVVEIGVDHINIVNADNSVARIDMDDLEFKSTRFLKLINEALKQSGNT 143 Query: 142 TLPFI----------YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +P + Y P+ ++ H ++ CG + I+ + Sbjct: 144 QVPSLNFYKNFFSISYSPSVNYYVA----HKEGVLLG---CGDD--------ISVFGKIG 188 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ILIGPEG + E + L F + ILR+DTA V ++A Sbjct: 189 ILIGPEGCFSKSEIDFFKKLNF-KFVRFNTPILRADTAVVYSLA 231 >gi|325473652|gb|EGC76841.1| hypothetical protein HMPREF9353_01943 [Treponema denticola F0402] Length = 257 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 20/229 (8%) Query: 29 YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKSIRFKV---EYQSRSQTKQSDV 82 Y+YL V R+KEG NI L K + KI+ K I ++ E+ ++ + Sbjct: 22 YNYLVSVRRIKEGQVLNISLNGVKPASAEVFKINTEKKYIELRLLKEEFAFDAEPYKPRA 81 Query: 83 QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA---EQ 137 + I IK N +D ++++ E G I PV+ ++ N+++ +Q Sbjct: 82 EIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSVIKKENINQTERRERIIREARQQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVA 191 + I P L+ L + ++ + I+ +++ GS + + L A + + Sbjct: 142 SGSVVNTKILPAQELKAALDSVLEYTAKRKTAFIMLSEKKTGSFSFFDCLSAETEV--IV 199 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + IG EGG S+E E L F + +LR++TAA+ ++A Q I Sbjct: 200 LAIGCEGGIGSKESEFLKEHKF-EEVHFNTNVLRAETAAIYSIAAAQVI 247 >gi|15594408|ref|NP_212196.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31] gi|3915343|sp|O51089|RSME1_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 1; AltName: Full=16S rRNA m3U1498 methyltransferase 1 gi|2687948|gb|AAC66455.1| predicted coding region BB0062 [Borrelia burgdorferi B31] Length = 238 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 12/106 (11%) Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENSLEKLHAIAHI 187 I+ A Q I LP I ++KN + + + F + +NS + L I I Sbjct: 130 IAGAMQGKITYLPKIK-------IIKNLKESLKYIQQENFEIKILLEKNSEKNLIDIEQI 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 N I++GPE G+ +EK+ + F +P S+ LR++TA +AA Sbjct: 183 NNAVIIVGPERGFTEKEKQLIAQYNF-SPYSISTNTLRTETATIAA 227 >gi|301165446|emb|CBW25017.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 230 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 105/237 (44%), Gaps = 28/237 (11%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++ R F++ L + Q SGD +L V+R+K+ + ILL NGK + ++ + + Sbjct: 5 YIDREFLENELGQEIQ--LSGDSARHLIKVIRIKKNETILLLNGKGQKCEARSTRID--- 59 Query: 66 RFKVEYQSRSQTKQSD---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 R +++ + S SD + K + + +++ + E+G+ I Y+Q Sbjct: 60 RREIDLEILSINNISDDRKLSLFLGLPKKDAFESIVKMASEIGIKNIYLYRAEYSQQDIE 119 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNW-----DHNCQIVFADETCGSEN 176 DR+ SA Q + P + FL + N+ D++ + F+ + + Sbjct: 120 FTDRLLKLEESAIIQSN--------NPFRINFLKVDNFSDAFKDYSNVVHFSTFSSTDAD 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 SL+ ++IGPE G+ +E++ + V+ + L I+R+ TA A Sbjct: 172 SLK------FDSETLLVIGPEAGFSQDEEDQIKGFENVSTVKLDTYIMRAPTALAVA 222 >gi|57237164|ref|YP_178176.1| hypothetical protein CJE0152 [Campylobacter jejuni RM1221] gi|86149681|ref|ZP_01067911.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597460|ref|ZP_01100695.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 84-25] gi|148926325|ref|ZP_01810009.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp. jejuni CG8486] gi|157414473|ref|YP_001481729.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni 81116] gi|205356592|ref|ZP_03223355.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561837|ref|YP_002343616.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165968|gb|AAW34747.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni RM1221] gi|85839949|gb|EAQ57208.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190521|gb|EAQ94495.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359543|emb|CAL34327.1| conserved hypothetical protein Cj0156c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844717|gb|EDK21822.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp. jejuni CG8486] gi|157385437|gb|ABV51752.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni 81116] gi|205345597|gb|EDZ32237.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925449|gb|ADC27801.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni subsp. jejuni IA3902] gi|307747117|gb|ADN90387.1| Putative uncharacterized protein [Campylobacter jejuni subsp. jejuni M1] gi|315057596|gb|ADT71925.1| Ribosomal RNA small subunit methyltransferase E [Campylobacter jejuni subsp. jejuni S3] gi|315927805|gb|EFV07131.1| RNA methyltransferase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930582|gb|EFV09615.1| RNA methyltransferase family protein [Campylobacter jejuni subsp. jejuni 305] gi|315931969|gb|EFV10922.1| RNA methyltransferase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 218 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 31/216 (14%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQT-KQS 80 G+ +++L V R+KE + L N +D ++ ++ +++F +SQ KQS Sbjct: 18 GENFNHLK-VRRVKENSELNLRNLQDNFLYNYTITNLTRNSCTLKF---LNKKSQNIKQS 73 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCD 139 ++ + I L+ + E+G+ + V T ++Q N +++R IS+ EQC Sbjct: 74 ELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCG 133 Query: 140 ILT-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPE 197 T + I +T EF+ K + + + F E +H + IGPE Sbjct: 134 RNTKMDLIIHQSTQEFVQK-FPNAIMVDFQGEQQ------------SHFDEKELYFIGPE 180 Query: 198 GGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232 GG++++E+ L F +SL IL+S TA +A Sbjct: 181 GGFNNDER-----LLFNRKISLKSSNILKSQTAIIA 211 >gi|303284987|ref|XP_003061784.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457114|gb|EEH54414.1| predicted protein [Micromonas pusilla CCMP1545] Length = 184 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 15/171 (8%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-RVRTYTISAAEQCD 139 +V +K R D++++K E+G ++ P +T + T + R +A++QC Sbjct: 3 EVAVACGGLKGGRADWLVEKLAELGAASLAPTLTARSAVTKRGREGRWVRVAAAASKQCL 62 Query: 140 ILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHA-------IAHIPNVA 191 + P + LL+ D ++ A ++L A P Sbjct: 63 RTHALVVESPCAFDALLRRVRDAPIALLAAAGAPPLRDALRDADVDDGDDGETASGPGRG 122 Query: 192 -----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++GPEG + +E L TP+ LGP LR +TAAVA MA V Sbjct: 123 ATGGLLIVGPEGDFTEDELGALIDA-GATPVGLGPLRLRVETAAVALMACV 172 >gi|312140293|ref|YP_004007629.1| RNA methyltransferase [Rhodococcus equi 103S] gi|311889632|emb|CBH48949.1| putative RNA methyltransferase [Rhodococcus equi 103S] Length = 253 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 31/238 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83 G + + A V R+K G+ +LL +G+ G + ++ GK R +E +R Q V Sbjct: 22 GPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKD-RLDLEVTARLDQQPPTPQVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + + K R + ++ + E G+ + P + R+ H + R R I+AA+Q Sbjct: 81 LVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHKGVTRWRNAAIAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAH---------- 186 +P + + H Q++ + LH A Sbjct: 141 ARRSFVPEVA----------DLHHTQQVLERVREVVGRGGVVAVLHESAKSPFASLPLRD 190 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P V +++GPEGG +E L L LGP +LR+ TAA A+ + + W Sbjct: 191 APEVMLVVGPEGGLSDDEIAALTGAGATAVL-LGPTVLRTSTAAAVALGAIGVLTDRW 247 >gi|224533961|ref|ZP_03674546.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|224512964|gb|EEF83330.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] Length = 238 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 I+ A Q I LP I L+ LK Q F + +NS + L I I N Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAV 186 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 I++GPE G+ +EK+ + F +P S+ LR++TA +AA Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227 >gi|164686290|ref|ZP_02210320.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM 16795] gi|164601892|gb|EDQ95357.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM 16795] Length = 250 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 20/225 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ- 83 G+ +++ VLR K G+ + + + + E++ +I+ + K + + + R ++SD++ Sbjct: 22 GEDVKHISKVLRCKIGEKLEICDKDNSEYICEITDINKEQVDLDI-IEKREIKRESDLKV 80 Query: 84 --YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAA 135 Y P K+ +++ ++QK E+G+ I R V+ + ++R AA Sbjct: 81 KLYQGLP-KSTKMELILQKLTEVGVDEIILVSTKRSVVKVDDKKEGKKIERWERIMYEAA 139 Query: 136 EQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 +Q +P + + + L KN D N + T ++++E A I ++ I Sbjct: 140 KQSKRGKIPKLRGILSFKEALEDMKNNDMNICPYENERTVSIKSAIEG----ADINSIGI 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +GPEGG+ EE E + + +SLGPRILR++TA+V A ++V Sbjct: 196 FVGPEGGFEEEEIENIQDINS-KVVSLGPRILRTETASVVASSIV 239 >gi|227833632|ref|YP_002835339.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC 700975] gi|262184635|ref|ZP_06044056.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium aurimucosum ATCC 700975] gi|227454648|gb|ACP33401.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC 700975] Length = 246 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%) Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + ++AA+Q +P + P T L + +V +E +E L+ L + Sbjct: 135 SAAVAAAKQSRRARVPAVRGPLTTRQLCQEISGARALVLHEE---AEVRLKDLTDLDAAE 191 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG +EE L + LGP +LR+ +A++ A+A + + W Sbjct: 192 TIYLLVGPEGGIGAEELARLQDA-GAAAIKLGPEVLRTASASMVALASIGTLTARW 246 >gi|325677133|ref|ZP_08156802.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707] gi|325552118|gb|EGD21811.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707] Length = 253 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 31/238 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83 G + + A V R+K G+ +LL +G+ G + ++ GK R +E +R Q V Sbjct: 22 GPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKD-RLDLEVTARLDQQPPTPQVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + + K R + ++ + E G+ + P + R+ H + R R I+AA+Q Sbjct: 81 LVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHKGVTRWRNAAIAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAH---------- 186 +P + + H Q++ + LH A Sbjct: 141 ARRSFVPEVA----------DLHHTQQVLERVREVVGRGGVVAVLHESAKSPFASLPLRD 190 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P V +++GPEGG +E L L LGP +LR+ TAA A+ + + W Sbjct: 191 APEVMLVVGPEGGLSDDEIAALTGAGATAVL-LGPTVLRTSTAAAVALGAIGVLTDRW 247 >gi|260891163|ref|ZP_05902426.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254] gi|260859190|gb|EEX73690.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254] Length = 90 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 +I+FA E G SL ++ ++ +IGPEGG EE + L + +SLG RI Sbjct: 14 KIIFAYENSGESKSLSEIIEKGD-KDILYIIGPEGGITQEEVDFLKNNK-AMEISLGKRI 71 Query: 224 LRSDTAAVAAMALV 237 LR++TAA+ ++ Sbjct: 72 LRAETAAIVVCGII 85 >gi|325474581|gb|EGC77767.1| hypothetical protein HMPREF9353_00614 [Treponema denticola F0402] Length = 287 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 36/250 (14%) Query: 27 DQYHYLAHVLRMKEGD--NILLFNGKDGEWL------SKISYV------GKSIRFKVEYQ 72 ++Y ++ +L +KEGD + NGK GE L KI + K+I K + Sbjct: 41 ERYLHIKKILNLKEGDVFKAGIINGKIGEALISHLSEEKIVFSFCPNPPDKNIADKGADK 100 Query: 73 SRSQTKQSDVQYI---FSPIKTN-------RLDYMIQKSVEMGMGAIRPVITR-----YT 117 ++ + +V+ I PIK +L +++ + +G I T Y Sbjct: 101 NKDRKDAYEVEKIPLPLPPIKIILGFPRPIQLRRILRDAASLGFAEIVLCGTELGERSYL 160 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFL--LKNWDHNCQIVFADETCGS 174 ++ + + ++ Y + Q LP F + + E L LK + D G Sbjct: 161 KSNLSSPEEIKKYLLDGISQAGQTLLPAFSFCSSVKEALKDLKAASFKGSKMLLD--IGD 218 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 SL I +V I IG E G+ E+E S F++ S+G RILR++TA +A+ Sbjct: 219 FPSLSTFRMIKG-ESVLIAIGSERGWTQNEREAFFSEGFIS-YSMGKRILRTETALTSAL 276 Query: 235 ALVQAICGDW 244 +++ A G W Sbjct: 277 SVLLANNGFW 286 >gi|302336696|ref|YP_003801902.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM 11293] gi|301633881|gb|ADK79308.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM 11293] Length = 272 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 40/249 (16%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGE----WLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 ++ HYL VLR+ +G +F G+D ++ S ++ + E ++ ++ ++ Sbjct: 24 ERAHYLLRVLRLSQG---AVFPGQDSRGKRYLITLESETPCTLSLRREEEASAREVEACF 80 Query: 83 QYI------FSPI-------KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNM 124 + + F PI K ++D +I+++ E G I PV+T ++T Sbjct: 81 RELPEQGPDFPPIIFYQAILKGKKMDQVIRQATEAGADFIIPVLTDRSVPQFTPGEAEKK 140 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--------WDHNCQIVFADETCGSEN 176 + + A Q T + P +L+ ++++ ++ F + + + Sbjct: 141 QKRWEIIVREAIQQSGATGTTLLLPRSLKKVIEDPPMPRPQGGGREVKLFFHERPIANGS 200 Query: 177 SLEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 LH I ++ +GPEGG+ +E E F PL ILR++TAA+ + Sbjct: 201 ----LHGYLSGEISSITAAVGPEGGFSPKESEMFLQAGFC-PLFFSGNILRAETAAIYGL 255 Query: 235 ALVQAICGD 243 A ++A+ + Sbjct: 256 AAIRALVAE 264 >gi|262283462|ref|ZP_06061228.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260953|gb|EEY79653.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 247 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 19/228 (8%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84 D ++ V+R+KEGD + L+F+ DG + +++ V + +E + + + VQ Sbjct: 20 DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLARVLDPNQQSLEILEELADNTELPVQV 75 Query: 85 IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K ++L+++ QK E+G AI ++ + +++ AAE Sbjct: 76 TIASGFPKGDKLEFITQKVTELGACAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAI 192 Q +P + L I+ A E E + L +A V Sbjct: 136 QSKRNLIPEVRLFDKKADFLAALAAFDCIIVAYEEAAKEGESAALVRALSGLAVGAKVLF 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + GPEGG EE V+ LGPRILR++TA + A+ V + Sbjct: 196 IFGPEGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242 >gi|86151272|ref|ZP_01069487.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 260.94] gi|86153813|ref|ZP_01072016.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613031|ref|YP_999881.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni subsp. jejuni 81-176] gi|167004847|ref|ZP_02270605.1| hypothetical protein Cjejjejuni_00900 [Campylobacter jejuni subsp. jejuni 81-176] gi|315123761|ref|YP_004065765.1| hypothetical protein ICDCCJ07001_153 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841619|gb|EAQ58866.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 260.94] gi|85842774|gb|EAQ59986.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250118|gb|EAQ73076.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 81-176] gi|315017483|gb|ADT65576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 218 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 31/216 (14%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQT-KQS 80 G+ +++L V R+KE + L N +D ++ ++ +++F +SQ KQS Sbjct: 18 GENFNHLK-VRRVKENSELNLRNLQDNFLYNYTITNLTRNSCTLKF---LNKKSQNIKQS 73 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCD 139 ++ + I L+ + E+G+ + V T ++Q N +++R IS+ EQC Sbjct: 74 ELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCG 133 Query: 140 ILT-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPE 197 T + I +T EF+ K + + + F G + S H + IGPE Sbjct: 134 RNTKMDLIIHQSTQEFIQK-FPNAIMVDFQ----GKQQS--------HFDEKELYFIGPE 180 Query: 198 GGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232 GG++++E+ L F +SL IL+S TA +A Sbjct: 181 GGFNNDER-----LLFNRKISLKSSNILKSQTAIIA 211 >gi|157413088|ref|YP_001483954.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9215] gi|157387663|gb|ABV50368.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9215] Length = 257 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 25/231 (10%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80 + ++ HYL V+R+K G I + NG+ W K V I+ K Y Q K+ Sbjct: 25 TNEEAHYLNKVMRIKNGKEIFIANGEGSLW--KAIKVNNDCLEIIQLKKPYL--FQEKEI 80 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYTI--SAAE 136 + I I + + +++ E+G+ I+P+ + N + N R +R I A E Sbjct: 81 YLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNAIIKEAVE 140 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI---- 192 Q + L P+I + LK+ D+ + + EN L+ I Sbjct: 141 QSERLWKPYILNGMDIIEWLKSRDNQESVSIS---ITRENPRYYLNQWLREHQEFINKKG 197 Query: 193 -----LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +IGPEGG+ S+E + + T + L ILR+ TA++ A +++ Sbjct: 198 GIFWNVIGPEGGWSSKEIDFFNK-NNNTFVKLSETILRTSTASINASSILN 247 >gi|315604659|ref|ZP_07879722.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313671|gb|EFU61725.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 262 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 18/246 (7%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74 L + + G + + A V R+ G+ + + +G+ + K ++ V R Sbjct: 18 LGVGERATLGGSEGRHAASVRRIGAGERVDIVDGRGLRLTCDVIGSDKDTLSLTVRESRR 77 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVR 128 +V + + K R + ++ E+G+ + R ++ + + Sbjct: 78 EDAPVPEVVLVQALAKGGRDEAAVEICTEIGVDRVIPWASQRAIVQWKGPKAEKGRAKWQ 137 Query: 129 TYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVF-----ADETCGSENSLEK 180 +AA+Q +P + L + + + F A E+ G+ + + Sbjct: 138 AVARAAAKQSRRAFVPPVEDAVDSARLSAWIASLTAEGGVAFVCHEEASESLGAALARIR 197 Query: 181 L-HAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L A +P +A+++GPEGG +EE L +T + LG +LRS TA A+ L++ Sbjct: 198 LGSAAGSLPARIALVVGPEGGIGAEESAQLVGAGALT-VGLGAHVLRSSTAGAVALTLIR 256 Query: 239 AICGDW 244 A G + Sbjct: 257 AAAGSY 262 >gi|42527383|ref|NP_972481.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC 35405] gi|41817968|gb|AAS12392.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC 35405] Length = 257 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 20/229 (8%) Query: 29 YHYLAHVLRMKEGDNILL-FNGKD--GEWLSKISYVGKSIRFKV---EYQSRSQTKQSDV 82 Y+YL V R+KEG + + NG + KI+ K I ++ E+ ++ + Sbjct: 22 YNYLVSVRRIKEGQVLKISLNGVKPASAEVFKINTEKKYIELRLLKEEFAFDAEPYKPRA 81 Query: 83 QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA---EQ 137 + I IK N +D ++++ E G I PV+ ++ N+++ +Q Sbjct: 82 EIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSVVKKENINQTERRERIIREARQQ 141 Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVA 191 + I P L+ L + D+ I+ +++ GS + + L A + Sbjct: 142 SGSVVNTKILPAQELKAALDSVLDYTANRKTAFIMLSEKKVGSFSFFDCLSA--ETEAIV 199 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + IG EGG S+E E L F + +LR++TAA+ ++A Q I Sbjct: 200 LAIGCEGGIGSKEIEFLKEHKF-EEVHFNTNVLRAETAAIYSIAAAQVI 247 >gi|330841125|ref|XP_003292554.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum] gi|325077196|gb|EGC30925.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum] Length = 297 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 62/289 (21%) Query: 7 LKRLFVD-FPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVG 62 ++R F++ FP +K + + SG Q +++ LR+K G+ I LF NGK+G ++KI + Sbjct: 2 VRRFFINEFPSFLKGSILQLSGQQNNHV-KTLRLKVGNTIELFDSNGKNG--VAKIIEIN 58 Query: 63 KS-IRFKVEYQSRSQTKQSDVQYI---FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 K+ ++E T ++ I S K R ++MI+K E+G+ + + T +++ Sbjct: 59 KNETILQLENLGIESTNSEEINKIDIATSLPKLARAEWMIEKLSEIGISNLILLETEFSK 118 Query: 119 N-------THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQ-- 164 + T+ +DR I +++Q + I PP +L LK+ + +C+ Sbjct: 119 SSPQSSSITNNKLDRFERIVIESSKQSRNNQIMNIIPPVSLNQFLKDRFINQKEGDCKYS 178 Query: 165 -IVFADETCGSENSL-------------------------EKLHAIAHIP-NVAILIGPE 197 + D G E L + AI P ++ + IG E Sbjct: 179 HVFIGDPYQGKELPLVLDDIKQEQQQLQQKQPQQPQQPQQQSNKAIIKKPKDILLFIGAE 238 Query: 198 GGYHSEEKETLHSLP--------FVTPLSLGPRILRSDTAAVAAMALVQ 238 GG+ E + S+ ++T +G ILR +TAA+ + +V+ Sbjct: 239 GGFSDRELYNIQSVVSNRNDSQLYLT--KMGNNILRMETAAILSSGIVK 285 >gi|154173682|ref|YP_001407502.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter curvus 525.92] gi|112803794|gb|EAU01138.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 217 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 23/204 (11%) Query: 37 RMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 R K G+ + L N KDG ++L +I G K R ++ + S + ++ + + Sbjct: 28 RAKVGERVNLRNLKDGKDYLYEIEEFGRKDARLRLVFTSTLTVRDYKFSLAWAVVDPKTI 87 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA--AEQCDILTLPFIYPPTTL 152 + I E+G+G + V T+++Q ++ +D R ISA EQC +L L Sbjct: 88 EKTIPFLNELGVGKLIFVYTKFSQ-ANFKIDVKRLEYISALSCEQCGRDSLMSFEIYKNL 146 Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212 + L + + F G +N + + IGPEGG+ EE ++S Sbjct: 147 DEFLAVYKDVALVNF-----GGKN-------LTEYKGELLFIGPEGGFALEETRKINS-- 192 Query: 213 FVTPLSLGPR-ILRSDTAAVAAMA 235 SL ILRS TAAV+ + Sbjct: 193 ---SYSLDTNSILRSQTAAVSVAS 213 >gi|268678804|ref|YP_003303235.1| hypothetical protein Sdel_0162 [Sulfurospirillum deleyianum DSM 6946] gi|268616835|gb|ACZ11200.1| protein of unknown function DUF558 [Sulfurospirillum deleyianum DSM 6946] Length = 222 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 18/148 (12%) Query: 97 MIQKSV----EMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 MI+K++ E+G+ + + ++Q +H + DR++ I++ +QC + ++ Sbjct: 88 MIEKTLPMLNELGVSKLSFIYAEFSQKSHKLDFDRMQRIVINSCQQCGRSRWMEMELFSS 147 Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 L+ L+ + + + F+ ET + +ILIGPEGG+ SE++ + S Sbjct: 148 LQAYLEAYPTSTILDFSQETMKESAEIS-----------SILIGPEGGF-SEKERNMFSN 195 Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQA 239 + L+ ILRS+TA VA + + A Sbjct: 196 HTIVGLTCKT-ILRSETAVVAVASKILA 222 >gi|295838961|ref|ZP_06825894.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74] gi|197695517|gb|EDY42450.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74] Length = 251 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEY-QSRSQTKQSDV 82 G + + V R++ G+ ++L +G G W + + GK R VE + R + S Sbjct: 25 GPEGRHAVSVKRLRPGEELVLSDGA-GRWAPCVVTAAEGKD-RLSVEVGELREEPVPSPR 82 Query: 83 QYIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAA 135 + + K +R + ++ E G+ A+ P +T++ + ++ + R A Sbjct: 83 LVVVQALPKGDRGELAVETMTETGVDAVVPWQAERCVTQWRGERGAKSLAKWRATAREAG 142 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +Q P + + + V E G+ ++ + ++ +++G Sbjct: 143 KQSRRPRFPEVAEAVSTKEAAALLSRAALAVVLHEDAGTASTPLATLPLPPSGDIVLVVG 202 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 PEGG E T + LGP +LR+ TA AA+AL+ G W Sbjct: 203 PEGGVAPAEL-TAFTAAGAHVCRLGPSVLRTSTAGTAAVALLSGRTGRW 250 >gi|149195029|ref|ZP_01872121.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2] gi|149134742|gb|EDM23226.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2] Length = 219 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 39/227 (17%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 Q + +G+ + YL V R+K+ + + + N KD I Y K + E +S T Q Sbjct: 11 NQIEITGESHKYLFKVRRIKKDELVKIRNLKDD-----ILYTYKIL----EINKKSSTLQ 61 Query: 80 SDVQYIFSPIKTNRLDYM---------IQKSV----EMGMGAIRPVITRYTQ-NTHYNMD 125 + FSP K ++ I+K + E+G+ I Y+Q N N++ Sbjct: 62 L-INKEFSPNKPKEFLHLAWCIIEPKNIEKVLPSLNEIGVSKISFTYCDYSQKNFKLNLN 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ I++++QC + I + + + + + + F G E K + Sbjct: 121 RLQKILINSSQQCGRSNIIEIEIINSSKEFFEKYQNFTALDFN----GKEIECNKKYT-- 174 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ILIGPEGG+ EE++ F + L IL+S+TAA A Sbjct: 175 ----NPILIGPEGGFSEEERKK-----FTEIIKLKSFILKSETAACA 212 >gi|256375381|ref|YP_003099041.1| hypothetical protein Amir_1243 [Actinosynnema mirum DSM 43827] gi|255919684|gb|ACU35195.1| protein of unknown function DUF558 [Actinosynnema mirum DSM 43827] Length = 244 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 18/230 (7%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 G + + A V R++ G+ ++L +G + +I+ K S+R +V + V Sbjct: 21 GPEGRHAATVRRLRAGEELVLSDGSGDQVRCEITEALKDSLRLRVVERWTVPEPGVRVVL 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH--YNMDRVRTYTISAAEQ 137 + + +K R + ++ + E G+ A+ P + ++ + R R AA+Q Sbjct: 81 VQALVKGERGELAVELATEAGVDAVLPWKAARCVAKWEDGPRGAKALGRWRATAREAAKQ 140 Query: 138 CDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILI 194 +P + P TT + +V E++ + ++A P+ V +++ Sbjct: 141 ARRARVPEVGEPVTTKQLAALASRAAAVLVL------HESAEVGIGSVALPPSGEVLLVV 194 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG +E L + LGP +LR+ TA A+ + + W Sbjct: 195 GPEGGIAEQELSALVEA-GAHVVRLGPSVLRASTAGAVALGALGVLTDRW 243 >gi|329116137|ref|ZP_08244854.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD 2020] gi|326906542|gb|EGE53456.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD 2020] Length = 247 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 15/223 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+ +GD ++L ++L+K+ G + + ++ Q + + VQ Sbjct: 20 DTIKHMFQVMRLGDGDQVVLVFDDGIKYLAKV-VDGAAYQLEI-VQDLGENLELPVQVTI 77 Query: 87 SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 + K ++LD++ QK E+G A+ V+ + +++ + AAEQ Sbjct: 78 ASGFPKGDKLDFITQKVTELGAEALWAYPADWSVVKWDGKKLAKKEEKLAKIALGAAEQS 137 Query: 139 DILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHI-PNVAILI 194 +P I +F+ + + + ++ +E+ G +++L + A V + Sbjct: 138 KRNKVPEIKLFEKKADFIGQLAEFDKILIAYEESAKEGEKSALARALATCQTGQKVLFIF 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG +E E + LGPRI+R++TA + A++ V Sbjct: 198 GPEGGISPKEIEIFEEAGGFK-IGLGPRIMRTETAPLYALSAV 239 >gi|125717118|ref|YP_001034251.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus sanguinis SK36] gi|125497035|gb|ABN43701.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 250 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ V+R+K GD ++L + L+++ + VE + + V Sbjct: 20 DTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSLEIVEELADNTELLVQVTIAS 79 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 K ++L+++ QK+ E+G A+ ++ + +++ AAEQ Sbjct: 80 GFPKGDKLEFITQKATELGACALWGFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSRR 139 Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGP 196 +P I +FL D + IV +E G +L + + ++ + + GP Sbjct: 140 NLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAATLVQAVRGLSKGDKLLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 EGG EE V+ LGPRILR++TA + A+ V + Sbjct: 200 EGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242 >gi|290991223|ref|XP_002678235.1| predicted protein [Naegleria gruberi] gi|284091846|gb|EFC45491.1| predicted protein [Naegleria gruberi] Length = 205 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 104 MGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQC-DILTLPFIYPPTTLEFLLKNW 159 MG+ I P++T Q+ Y DR+ ISA EQ +P I P +++ K Sbjct: 54 MGVNKIIPIMTEKKQHAEYFENKKDRLEKIMISAVEQSKQFYGMPEIASPLSIQDYCKQM 113 Query: 160 DH--NCQIVFADETCGSE------NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 N + VF D G + N +E+ + N+ +L+GPE +E+ L L Sbjct: 114 KEQLNERRVFLD-VDGEKPWLSLLNEIEENKQKMNKMNINLLVGPERDLFDQERAQLAEL 172 Query: 212 PFVTPLSLGPRIL-RSDTAAVAAMALVQAI 240 F + LSL +I+ RS+ A ++ + ++ Sbjct: 173 GFES-LSLARKIVYRSEVALSVSLGSITSV 201 >gi|298346299|ref|YP_003718986.1| hypothetical protein HMPREF0573_11173 [Mobiluncus curtisii ATCC 43063] gi|304389936|ref|ZP_07371893.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236360|gb|ADI67492.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC 43063] gi|304326829|gb|EFL94070.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 300 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A+++GPEGG + E T + P LGP +LR +A AA+A++Q+ G W Sbjct: 238 DIAVIVGPEGGITAPEL-TAFTAAGARPALLGPTVLRCSSAGPAALAVIQSQLGSW 292 >gi|251796224|ref|YP_003010955.1| hypothetical protein Pjdr2_2213 [Paenibacillus sp. JDR-2] gi|247543850|gb|ACT00869.1| protein of unknown function DUF558 [Paenibacillus sp. JDR-2] Length = 258 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 20/226 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQY 84 D +H + V+RMK + + +G L+ + S + VE V Sbjct: 22 DAFHAV-RVMRMKPEEKFIASDGISRVVLASVREAASSEVVADIVEELPMDSESSWSVTI 80 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQC 138 S K ++++ +IQK E+G A P +I +Y + ++R AAEQ Sbjct: 81 AQSLPKGDKMELVIQKGTEIGAYAFAPFQSERMIVQYDGKKEAKRLERWSKIAKEAAEQS 140 Query: 139 DILTLPFIYPPTT---LEFLLKNWDHN--CQIVFADETCGS--ENSLEKLHAIAHI---P 188 +P I P + L+ ++ +D C D G+ +++ H+ P Sbjct: 141 HRCRVPAIEPVRSWRELKEVIPTFDLALFCYEREGDAAAGTGIRDAVLNWKQAGHMAAEP 200 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 V +++GPEGG+ E + + V + LG RILR++TA + + Sbjct: 201 KVLLIVGPEGGFTEREADEAEAAGAVI-VGLGRRILRTETAGIVGL 245 >gi|315657188|ref|ZP_07910072.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492291|gb|EFU81898.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 300 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A+++GPEGG + E T + P LGP +LR +A AA+A++Q+ G W Sbjct: 238 DIAVIVGPEGGITAPEL-TAFTAAGARPALLGPTVLRCSSAGPAALAVIQSQLGSW 292 >gi|116333373|ref|YP_794900.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367] gi|116098720|gb|ABJ63869.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367] Length = 250 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 15/163 (9%) Query: 90 KTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K + +++ QK+ E+G+ GA V + R+ AAEQ L Sbjct: 86 KQEKAEWITQKATELGVTHIIFFGAEWSVAKWSANKVPKKLARLTKIAHGAAEQAHRLRR 145 Query: 144 PFI-YPPTTLEFLLKNWDHNC----QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P + Y P L + D + E L++LH H+ V GPEG Sbjct: 146 PTVSYAPNLAAVLATSADVTILAYEESAKQGEQAALNQQLQRLHPQQHLMAV---FGPEG 202 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 G E + + LGPRILR++TA + ++ V +C Sbjct: 203 GISPAEVTRAQAAGAIL-AGLGPRILRTETAPLYLLSAVSVVC 244 >gi|148984210|ref|ZP_01817505.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP3-BS71] gi|147923499|gb|EDK74612.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP3-BS71] gi|301800568|emb|CBW33208.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] Length = 247 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I L D I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E+ + V LG RILR++TA + A++ + + Sbjct: 203 LSPAEIESFEAKGAVLA-GLGSRILRAETAPLYALSALSVLV 243 >gi|82622375|gb|ABB86775.1| unknown [Theileria lestoquardi] Length = 201 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 19/166 (11%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE----QCDILTLPF 145 + LD ++Q S +G+G I + + + +++ ++ +I+ + Q + TL Sbjct: 31 RPKSLDKLLQYSASIGVGNIDLICSSKVEKSYWASHKLSKESINKSLILGLQQGVCTL-- 88 Query: 146 IYPPTTL-------EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPE 197 P TL E K D+ +++ + SE +L L+ H+ + + IGPE Sbjct: 89 -MPEVTLFISLGDYERAFKQKDYAMKLIAHPD---SEQTLGSLNLNTHVKGPILVAIGPE 144 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GG+ E L FV L RILR++ AAVA ++ + + D Sbjct: 145 GGWLDHELAYYKKLGFVQ-FKLTDRILRTEVAAVAILSQMSLLLND 189 >gi|88808873|ref|ZP_01124382.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805] gi|88786815|gb|EAR17973.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805] Length = 251 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 19/212 (8%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + YL VLR++ G + + +G + ++++ G + E + T + + Sbjct: 29 EARYLKRVLRLRPGAEVHVVSGCGQLFSTRLTTEG-DLALDSELGALPYTVAAPHPPLGL 87 Query: 88 PIKTNR--LDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 + R +D +++ + E+G+ ++P+ R Y DR A EQC+ L P Sbjct: 88 AVSLMRRGMDEVMRMACELGVDRLQPLQAQRCVPQAEYRPDRWGVILREAVEQCERLWAP 147 Query: 145 FIYPPTTLEFLLKNWDHNCQI-------VFADETCGSENSLEKLHAIAHIPN-VAILIGP 196 + P + + +W N V D+ C ++L L +P+ I IGP Sbjct: 148 ELLPVLSTD----DWWGNPSAEHLRLIAVTRDQACSDLSTL--LAVTKSLPDGCWITIGP 201 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 EGG+ S E + + + LG ILRS T Sbjct: 202 EGGWTSAELRSAAEAGWCG-VGLGDTILRSST 232 >gi|88855039|ref|ZP_01129704.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1] gi|88815567|gb|EAR25424.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1] Length = 243 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 15/225 (6%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + + V R+K G+ + + NG G +S + +E + +T +S + Sbjct: 25 EARHAVTVSRLKVGETVAIGNGA-GLVVSGPITTAEHTELTIEVANAERTARSTPAVFLA 83 Query: 88 PI--KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQ-NTHYNMDRVRTYTISAAEQCD 139 K +R + +Q + E+G+ + P I+R+ DR A++Q Sbjct: 84 QALAKADRDELAVQVATELGIDGVIPWSAARSISRWQGPKVAKGRDRWAAIVREASKQSL 143 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + T + L +V E +E +L +L ++ +++GPEGG Sbjct: 144 RTWLPDVLDLVTTKQLAAFAATTRMLVL--EPTATE-TLSELEVDGR--DIVLVVGPEGG 198 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E E L + T + LG +LR+ TA AA+A++ G W Sbjct: 199 VADHELELLTAAGAST-VRLGNEVLRTSTAGPAALAVLNVKLGRW 242 >gi|270263053|ref|ZP_06191323.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13] gi|270042741|gb|EFA15835.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13] Length = 90 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 H+I +P +V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 24 HSINTLPLPVDHVRLLIGPEGGLSADEIAMTTGYGF-TDILLGPRVLRTETTALTAITAL 82 Query: 238 QAICGD 243 Q GD Sbjct: 83 QVRFGD 88 >gi|312879754|ref|ZP_07739554.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM 12260] gi|310783045|gb|EFQ23443.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM 12260] Length = 243 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 33/214 (15%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQYI 85 Q H+L VLR EG L G GE + + R + E R V + Sbjct: 25 QAHHLTRVLRRYEGA---LLEGLSGEGRVLLRLRLGAGRVEAEEVERVPESPDLLRVVLV 81 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +K ++ + +++ + E G+ IR V + + R R + Q Sbjct: 82 VALLKADQFEPLLRMAAEFGVAEIRLLACERSVPRLESCREEGKLSRWRRILDESTRQSG 141 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--------NVA 191 L P ++PP + L +E + A +P A Sbjct: 142 SLRPPTLHPPVLVREL-------------EEATLPPSRFGAFLAPGTVPLGRCLPVEAAA 188 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + +GPEG + +E ETL + FV P+ LGPRILR Sbjct: 189 VAVGPEGDWSDQEVETLRAKGFV-PVGLGPRILR 221 >gi|317014464|gb|ADU81900.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Gambia94/24] Length = 226 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 25/238 (10%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLELRNLKDGFLYTYEHAEIAKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQVLEVIPSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R + I + EQC L + P+T E +L + + + F ET + + EK Sbjct: 122 KLERFQKILIHSCEQCGRSVLMELEAFPSTKE-VLNAYPNASVLDFNGETLPTSANFEK- 179 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 I+IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 ---------GIIIGPEGGFSEQEREYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225 >gi|55820236|ref|YP_138678.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus thermophilus LMG 18311] gi|55822127|ref|YP_140568.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus thermophilus CNRZ1066] gi|55736221|gb|AAV59863.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738112|gb|AAV61753.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] Length = 247 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 16/236 (6%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V+ P+ IK + + ++ +V+R+ E D ++L + L+++ + +E Sbjct: 10 VENPVIIKDK-----NTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVFEVIED 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMD 125 + + V K ++L+ + QK E+G AI V+ + D Sbjct: 65 LNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKLAKKED 124 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAI 184 ++ + AAEQ +P + L H +I A E L L + Sbjct: 125 KLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELATLAREL 184 Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + N + + GPEGG E + V + LGPRI+R++TA + A++ V Sbjct: 185 AKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSSV 239 >gi|262203051|ref|YP_003274259.1| hypothetical protein Gbro_3161 [Gordonia bronchialis DSM 43247] gi|262086398|gb|ACY22366.1| protein of unknown function DUF558 [Gordonia bronchialis DSM 43247] Length = 249 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 17/232 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82 SG + + V R+ G+ I++ +G + ++ V + + D V Sbjct: 21 SGPEGRHAVTVTRVAVGERIVIGDGAGSTAVCEVQAVESKDTLIARVREFAYVAPPDPQV 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + + + E G I P + R+ + + R SAA+Q Sbjct: 81 TVVQALPKSERSELAVDLATEAGADVIVPWQAARCVARWAGKADKGVAKWRAAASSAAKQ 140 Query: 138 CDILTLPFI---YPPTTLEFLLKNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAI 192 +P I T + L + +V +E G L +A + + Sbjct: 141 SRRAWIPEITDLATTTDVRALCADTIATGGLVAILHEEATGGLRELP----LAQANRIVL 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +IGPEGG E + L +L P+ LGP ILR+ TAA A+ + + W Sbjct: 197 VIGPEGGLDDGEVDDLTAL-GAEPVLLGPEILRTSTAAAVALGAIGVLTERW 247 >gi|195952461|ref|YP_002120751.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1] gi|195932073|gb|ACG56773.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1] Length = 219 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%) Query: 75 SQTKQSDVQY---IFSPIKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMD---RV 127 +TK DV+ + PIK L+ +I +V+ G+ I PV R Q++ ++ R+ Sbjct: 57 EKTKPPDVKIYANVCIPIKLQTLETIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRL 116 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + A +Q LP + P +L+ L+ + IVF D +N L K + Sbjct: 117 QKILKEAIKQSRPSFLPKLNHPISLQDITLQGYG----IVF-DSFEKPKNDLLKDN---- 167 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ GPEGG EE E L +L F T SLG ILR + A A + +++ Sbjct: 168 --KYTLVFGPEGGLSKEEVEFLKALGFNTH-SLGDNILREELAVFAGIFMIR 216 >gi|291515586|emb|CBK64796.1| RNA methyltransferase, RsmE family [Alistipes shahii WAL 8301] Length = 237 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 9/222 (4%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ + VLR++ G I + +G+ + +I+ R V S ++T + Y Sbjct: 19 EESKHCIRVLRLQCGGRIHITDGRGNLFCCEITD-DNPRRCTVRVVS-AETGFEKLPYAL 76 Query: 87 ----SPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K + R ++ ++K+ E+G+ A+ P+ T +++ + +R +A +Q Sbjct: 77 TMAVAPTKNSERFEWFLEKATEVGVTAVVPLETEHSERRVFKPERGEKVVTAALKQSLKA 136 Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P ++P T E +L + I A+ + IGPEG + Sbjct: 137 YRPVLHPLTPFREAVLSAPEGRKFIAHCAPAQSPAGKAYLARALRPGETATVFIGPEGDF 196 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 E + F ++LG + LR++TAA+AA+ + + G Sbjct: 197 SPGEIAFALANGF-EEITLGRQRLRTETAALAAVVMASVVNG 237 >gi|41408259|ref|NP_961095.1| hypothetical protein MAP2161c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396614|gb|AAS04478.1| hypothetical protein MAP_2161c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 253 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 17/216 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 GD+ + A V R++ G+ ++L + G ++ + G+ +R +V + V Sbjct: 21 GGDEGFHAATVRRIRPGERLVLGDRAGGLARCEVEHAGRDGLRARVLERWTVAPPNPPVT 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + ++ + E G A R V + + R R +AA Q Sbjct: 81 VVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDKGLRRWRAVAKAAARQ 140 Query: 138 CD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH--AIAHIPNVAI 192 I T+ + +L +++ +V A E++ ++L +A ++ + Sbjct: 141 SRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALH----ESATDRLTDVPVAQAKSLFL 196 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +IGPEGG +E L ++ + LGP++LR+ T Sbjct: 197 VIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231 >gi|237753184|ref|ZP_04583664.1| ribosomal RNA small subunit methyltransferase E [Helicobacter winghamensis ATCC BAA-430] gi|229375451|gb|EEO25542.1| ribosomal RNA small subunit methyltransferase E [Helicobacter winghamensis ATCC BAA-430] Length = 219 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 21/217 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 G+ Y++L R ++ D+I L N D ++ I+ +GK S +++ ++K Sbjct: 18 GEIYNHLFRSRRTRKLDSITLCNLSDTNVYIYTIAEIGKKSATLQLKTTQNMESKTPKGH 77 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI--SAAEQCDIL 141 I++ I ++ + E+ + I ++Q H+ +D +R I ++ EQC L Sbjct: 78 LIWAMIDPKNIEKTLPFLNELNLAHITFFYADFSQK-HFKLDNLRLDRILENSCEQCGRL 136 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 T + L +L+ + + F + E+SLE + LIG EGG+ Sbjct: 137 TRLKLELLNNLTEVLQKYPKIAVMDFNAKPL--ESSLE----------IPFLIGTEGGFS 184 Query: 202 SEEKETLHS-LPFVTPLSLGPRILRSDTAAVAAMALV 237 E++ L + F P ILRS+TAAV A + + Sbjct: 185 PNERKLLSTQTTFSAP---NCNILRSETAAVYATSKI 218 >gi|167837895|ref|ZP_02464778.1| hypothetical protein Bpse38_15507 [Burkholderia thailandensis MSMB43] Length = 156 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 35/163 (21%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ ++I Sbjct: 8 AAVPRFFVDAALQADATLPLPVDVARH-AQVLRLQPGDLLALFDGTGGQYRARI------ 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109 VE R + D F P++ +++D++I+K+VE+G+ A+ Sbjct: 61 ----VEIDRRGALARIDA---FEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113 Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 P V+ + + R ++ EQC +P + Sbjct: 114 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPDV 156 >gi|134098067|ref|YP_001103728.1| protein involving differentiation [Saccharopolyspora erythraea NRRL 2338] gi|291007474|ref|ZP_06565447.1| protein involving differentiation [Saccharopolyspora erythraea NRRL 2338] gi|133910690|emb|CAM00803.1| protein involving differentiation [Saccharopolyspora erythraea NRRL 2338] Length = 245 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 12/212 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 SG + + A V R+ G+ +LL +G+ G ++ + S+ VE V+ Sbjct: 20 SGPEGRHAATVRRIGVGEQLLLSDGRGGMARCSVTSTARDSLELDVEESWLVPRPALRVR 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH--YNMDRVRTYTISAAE 136 + +K +R + ++ + E G+ + P + R+ + R R+ AA+ Sbjct: 80 LAQALVKGDRGELAVELATEAGVDGVLPWKAARCVARWDDGPRGAKALGRWRSTVAQAAK 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q P + P T L + V E+ + + L A + +++GP Sbjct: 140 QARRPWTPEVGEPVTTRQLSRVVAEADAAVVLHESASTPLASVDLPAEGEL---VLVVGP 196 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 EGG +E L + LGP +LR+ T Sbjct: 197 EGGVGEDELAVLTEA-GAQAVRLGPSVLRAST 227 >gi|227548789|ref|ZP_03978838.1| protein of hypothetical function (DUF558) [Corynebacterium lipophiloflavum DSM 44291] gi|227079119|gb|EEI17082.1| protein of hypothetical function (DUF558) [Corynebacterium lipophiloflavum DSM 44291] Length = 234 Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust. Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 18/233 (7%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 +G+ G + + V R+ G+ I+L +G ++ + + E + +Q Q Sbjct: 12 ARGELDGAEGRHAVTVKRIGVGERIMLVDGAGTAAEIAVAEIRGKDYLRGEVLALTQVPQ 71 Query: 80 SD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH-YNMDRVRTYT 131 + + + K R + + +V+ G AI P I R+ + + + + Sbjct: 72 PTPRITVVQAIPKAERAELAVDLAVQGGADAIVPWLSNRTIARWPADKQGKQVAKWQAVA 131 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 AA+Q +P + P T L + +V E+++ + + V Sbjct: 132 REAAKQSRRAWVPQVAEPVTTNQLRELVVGKQALVL------HEDAVAPISGVEFADEVF 185 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE E L + + LGP +LR+ +AA AA+ + A+ W Sbjct: 186 LIVGPEGGIGPEELEALGA----DAVKLGPEVLRTASAAFAALCAIGAVTERW 234 >gi|32398792|emb|CAD98502.1| conserved hypothetical protein [Cryptosporidium parvum] Length = 343 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 12/149 (8%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS-----AAEQCDILTLPFIYP 148 + ++Q +V +G+G I V T ++ ++ N +++ +I EQ P +Y Sbjct: 184 FEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASKTLCPDVYV 243 Query: 149 PTTLEFLLKNWDH-----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + F L++ + I + G+ + + ++ +H + + IGPEGG+ E Sbjct: 244 YASWTFFLQHLRNYFFCKESMIGIVADVLGN-SKITEIGLQSHTGPIILAIGPEGGWTKE 302 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E L ++ F +++G RIL+ +TA ++ Sbjct: 303 ELTDLITMGF-KVVNMGDRILKVETALIS 330 >gi|311895971|dbj|BAJ28379.1| putative ribosomal RNA small subunit methyltransferase E [Kitasatospora setae KM-6054] Length = 247 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 22/232 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK-SIRFKVEYQSRSQTKQSDVQ 83 G + + A V R++ G+ + L +G+ +S + GK ++ V + Sbjct: 24 GAEGRHAAAVKRLQPGEALTLADGRGRGADGTVSALHGKDALDVLVAAVREEPAPAPRIT 83 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + + K +R + ++ E G+ AI P IT++ + + + R A +Q Sbjct: 84 VVQALPKGDRGELAVETMTEAGVDAIVPWAASRCITQWKGERGAKALAKWRATAREAGKQ 143 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIP---NVAI 192 L P + T LL + AD E +L A A +P + + Sbjct: 144 ARRLRFPEVGDALTTRQLLP------LLAAADFAAVLHEEGALP--LAGADLPAAGEIVL 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG +E P LGP +LR+ TA VAA AL+ G W Sbjct: 196 VVGPEGGVSPDEIAAFAEA-GAAPYRLGPSVLRTSTAGVAAGALLLGRTGRW 246 >gi|66475514|ref|XP_627573.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|46229333|gb|EAK90182.1| hypothetical protein with a C-terminus transmembrane domain [Cryptosporidium parvum Iowa II] Length = 336 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 12/149 (8%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS-----AAEQCDILTLPFIYP 148 + ++Q +V +G+G I V T ++ ++ N +++ +I EQ P +Y Sbjct: 184 FEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASKTLCPDVYV 243 Query: 149 PTTLEFLLKNWDH-----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + F L++ + I + G+ + + ++ +H + + IGPEGG+ E Sbjct: 244 YASWTFFLQHLRNYFFCKESMIGIVADVLGN-SKITEIGLQSHTGPIILAIGPEGGWTKE 302 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E L ++ F +++G RIL+ +TA ++ Sbjct: 303 ELTDLITMGF-KVVNMGDRILKVETALIS 330 >gi|294790827|ref|ZP_06755985.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304] gi|294458724|gb|EFG27077.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304] Length = 250 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 16/183 (8%) Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYN 123 +Y+ + K VQ + K++R + I+ + E+G+ I P ++ Sbjct: 72 QYEPQPSIKLGLVQAL---AKSDRDEQAIEMATEIGVDFILPWQADRSIVQWKGPKAARG 128 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLE 179 + + + I A EQ +P + P E++ K D Q++ + + S Sbjct: 129 LRKWQDQLIMATEQSRRSRIPRLNPLVASSGLEEWIRKEVDAGSQVLLLHQDA--DLSWS 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ P +++++GPEGG +E E + P+ LG ILR+ +A A+AL+ Sbjct: 187 QVSLPETSPMISVIVGPEGGISDKEVEAFAAA-GAKPVLLGHTILRASSAGPVALALLSG 245 Query: 240 ICG 242 G Sbjct: 246 ALG 248 >gi|332364548|gb|EGJ42319.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK355] Length = 250 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 15/226 (6%) Query: 27 DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQY 84 D ++ V+R+K GD + L+F+ + + +S+ E ++ Q + Sbjct: 20 DTAKHMFSVMRLKAGDQVTLVFDDGVKRLVQVLDPSQQSLEILEELADNTELPVQVTIAS 79 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 F K ++L+++ QK E+G A+ ++ + +++ AAEQ Sbjct: 80 GFP--KGDKLEFITQKVTELGACALWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQS 137 Query: 139 DILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILI 194 +P + +FL D + IV +E+ + + A++ + + V + Sbjct: 138 KRNLIPEVRLFDKKADFLAALADFDRIIVAYEESAKEGETAALVRALSGLESGAKVLFIF 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEGG +E V+ LGPRILR++TA + A+ V + Sbjct: 198 GPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242 >gi|312601158|gb|ADQ90413.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma hyopneumoniae 168] Length = 93 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query: 177 SLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 S E+ +IP N I+IGPEGG+ E + L F + ++LG RILRS+TAA+ Sbjct: 27 SFERAKNNINIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGFQS-ITLGKRILRSETAAI 84 >gi|283458058|ref|YP_003362669.1| hypothetical protein RMDY18_10170 [Rothia mucilaginosa DY-18] gi|283134084|dbj|BAI64849.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa DY-18] Length = 304 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 40/239 (16%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 A V R++ G+ I L +G L ++ + G S++ + + RS VQ + Sbjct: 79 ALVKRLELGERIDLGDGTGRRALGTVASINVDGVSVQVQELREERSVPSIYLVQAL---A 135 Query: 90 KTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K R I+ + E+G+ A R ++ + + + +AA+Q + Sbjct: 136 KDGRDLLAIETATELGVYGVLPWSADRSIVRWKGERASKAHTKWQNTVTAAAKQSRRALI 195 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----------LEKLHAIA-------H 186 P +Y L N +++ +E GSE S E+L A+A + Sbjct: 196 PEVYD-------LYNTADLVELI--EEVAGSEQSAAVFILHEQATERLSALARTLVEAEN 246 Query: 187 IPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +P + +L+GPEGG E + L LG +LRS TA AAM + + G W Sbjct: 247 LPEEIYLLVGPEGGISDREVQLFTDAGAQLAL-LGDEVLRSSTAGSAAMCTLNVVLGRW 304 >gi|317178616|dbj|BAJ56404.1| hypothetical protein HPF30_0307 [Helicobacter pylori F30] Length = 226 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 29/240 (12%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPILKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMASKKTHLILSVIEIKNVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKI 121 Query: 123 NMDRVRTYTISAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R + I + EQC ++ L P T E LK + + F ET + E Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVF--PNTKE-ALKAYPKASVLDFKGETLPASVDFE 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 K ++IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 179 K----------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|227495124|ref|ZP_03925440.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM 15436] gi|226831576|gb|EEH63959.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM 15436] Length = 248 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 21/230 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+ A V+R+ G+ I L DG L IS V + V + R ++ ++ Sbjct: 23 TGSEAHH-ACVMRVAPGEEIHLV---DGHGLRVISEVISAADKSVTVRPREIKNETSIRP 78 Query: 85 IFSPI----KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134 + + + K R + ++ + E+G+ + R ++ + N+++ +A Sbjct: 79 VTTLVQALAKGGRDEQAVEMATEVGIDKVIAWQSQRTIVKWEGKKQGKNLEKWSNLLKAA 138 Query: 135 AEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAI 192 +Q +P + Y +T L K D ++ E++LE++ +A+ Sbjct: 139 TKQSRRSRIPTVDYAESTKSLLNKLTDAKLLVLHES----GEHTLEQIPTEWFDTTEIAL 194 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 ++GPEGG +E + + + +G ++RS TA A+ALV + G Sbjct: 195 IVGPEGGI-TEAELAAFTAQGAQIVRIGNTVMRSSTAGTVALALVNYLSG 243 >gi|328882378|emb|CCA55617.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 23/234 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDV 82 G + + V R++EG+ ++L +G G W + + + + +V+ ++ + Sbjct: 21 GPEGRHAVSVKRLREGEELVLADG-GGRWAACVVLAAEGKDQLTVRVDEVHEDPAEEPRI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAE 136 + + K +R + ++ E G+ AI P IT++ + + + R+ A + Sbjct: 80 TVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGDRGLKALAKWRSTAREAGK 139 Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---V 190 Q P + P T + LL D V ++ +L A A +P + Sbjct: 140 QSRRSRFPEVAEPMTTKQVAALLAGADFAA--VLHEDRDHPSGAL----ATAELPAKGAI 193 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE + P LG +LR+ TA AA ALV G W Sbjct: 194 VLVVGPEGGVSPEELAVFEAA-GAKPYRLGRSVLRTSTAGTAATALVLGRTGRW 246 >gi|118468490|ref|YP_888775.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium smegmatis str. MC2 155] gi|118169777|gb|ABK70673.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 10/210 (4%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84 GD+ H+ A+V R++ G+ I L +G + K S+ ++ Q + V Sbjct: 22 GDEGHHAANVRRIRVGERIDLSDGAGTLAHCVVENTAKGSVSARITEQVTLPPARPSVTV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K++R + I+ + E G A R V + R SAA Q Sbjct: 82 VQALPKSDRSELAIELATEAGADAFVAWQSARCVARWDGPKADKGLRRWSAVARSAARQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + + LL+ +V A + E +A +V ++IGPEG Sbjct: 142 RRAYIPTVTGVESTRDLLRRIASTDSVVLALHESATAPFAEI--PVAQSDSVILIIGPEG 199 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 G +E L + LGP +LR+ T Sbjct: 200 GIADDEIAALTDA-GAHAVRLGPTVLRTST 228 >gi|283955603|ref|ZP_06373096.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp. jejuni 1336] gi|283792828|gb|EFC31604.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp. jejuni 1336] Length = 218 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 27/214 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSRSQTKQSDV 82 G+ +++L V R+KE + L N +D +L + S K+ + KQS++ Sbjct: 18 GENFNHLK-VRRVKENSELNLRNLQDN-FLYNYTITNLTRNSCTLKLLNKKSQNIKQSEL 75 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDIL 141 + I L+ + E+G+ + V T ++Q N +++R IS+ EQC Sbjct: 76 NLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCGRN 135 Query: 142 T-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGG 199 T + I +T EF+ K + + + F E +H + IGPEGG Sbjct: 136 TKMDLIIHQSTQEFVQK-FPNAIMVDFQGEQQ------------SHFDEKELYFIGPEGG 182 Query: 200 YHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232 + + E+ L F SL IL+S TA +A Sbjct: 183 FSNNER-----LLFNRKTSLKSSNILKSQTAIIA 211 >gi|225458830|ref|XP_002285308.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 266 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 33/187 (17%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D+ Y+ H + G +L + + E +K+ +G S RF ++ ++ +++ +F Sbjct: 88 DRCAYVGHSVSAMIG---ILASIRRPELFTKLVLIGASPRFLNDHDYHGGFEEGEIEKVF 144 Query: 87 SPIKTNRLDYMIQKSVEMGMGA---------------IRPVITRYTQNTHYNMDRVRTYT 131 S ++ N D + + +GA +RP IT + T +N D Sbjct: 145 SAMEAN-YDAWVHGFAPLSVGADVPAAVREFSRTLFNMRPDITLFVSRTIFNSDLRGVLG 203 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 + C I T + PT++ LKN G N++E L+ H+P+++ Sbjct: 204 LVKVPCCIIQTAKDVSVPTSVALYLKN------------HLGGRNTVEMLNVEGHLPHLS 251 Query: 192 --ILIGP 196 +L+ P Sbjct: 252 APMLLAP 258 >gi|260903866|ref|ZP_05912188.1| 16S ribosomal RNA methyltransferase RsmE [Brevibacterium linens BL2] Length = 248 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG E E L ++ T L LGP +LRS +A A + + Q G W Sbjct: 194 RIVLVVGPEGGISDAELEALSAIGADTVL-LGPTVLRSSSAGAAGLVMAQNSLGRW 248 >gi|225021770|ref|ZP_03710962.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii ATCC 33806] gi|224945466|gb|EEG26675.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii ATCC 33806] Length = 239 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +A + +V ++IGPEGG E + + P+ LGP +LR+ +A + A+A + A+ Sbjct: 180 VAQVDSVVLIIGPEGGISPAELDAFTAA-GARPVRLGPEVLRTASAGMVALAALGAVTDR 238 Query: 244 W 244 W Sbjct: 239 W 239 >gi|109947089|ref|YP_664317.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter acinonychis str. Sheeba] gi|109714310|emb|CAJ99318.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 226 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 21/237 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKSIRFK 68 FV PL + K G+ Y +L R+K + L N KD + + K + Sbjct: 3 FVYHPLAKEPTLKIEGESYTHLYRSRRIKSASGLDLRNLKDSFLYTYEHVEITKKHALLR 62 Query: 69 VEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 + Q + S I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGQKELEIMASKKTHLILSVIEVKSIEKILPFLNQLGVNKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I++ EQC L + + + +LK + C + F + + S EK Sbjct: 123 LERFQKILINSCEQCGRGALMELEVFSNTKEMLKAYPKACVLDFNGKMLQTNFSAEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +EK + PL + +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSKQEKGQFKEREIYRIPLDM---VLKSESACVFVASITQV 226 >gi|139474464|ref|YP_001129180.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes str. Manfredo] gi|134272711|emb|CAM30983.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 249 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L ++DH I A E L L + + P IL GP Sbjct: 143 PEVHLFEQKTEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG E + + + LGPRI+R++TA + A++ Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237 >gi|317180814|dbj|BAJ58600.1| hypothetical protein HPF32_1018 [Helicobacter pylori F32] Length = 226 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 27/239 (11%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-- 68 FV PL + K G+ Y +L R+K ++ L N KDG +Y I K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASHLDLRNLKDGFLY---TYEHAEITKKHA 59 Query: 69 ----VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 60 LLKLVGAQTLEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKID 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + ++R + I + EQC L + + + LK + + F ET + EK Sbjct: 120 NAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASVDFEK 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 ----------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|19746890|ref|NP_608026.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS8232] gi|19749135|gb|AAL98525.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 249 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL----HAIAHIPNVAILIGP 196 P ++ EFL L ++DH I A E L L + + + GP Sbjct: 143 PEVHLFEQKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKLGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + + + LGPRI+R++TA + A++++ Sbjct: 200 EGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSVL 239 >gi|297380257|gb|ADI35144.1| conserved hypothetical protein [Helicobacter pylori v225d] Length = 226 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 V Q+ + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMASKKMHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + + L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFSNTKEALNAYPKASVLDFKGETLPASVGFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQERECFKEREIYRIPLDM---VLKSESACVFMASVAQ 225 >gi|203283988|ref|YP_002221728.1| hypothetical protein BDU_66 [Borrelia duttonii Ly] gi|201083431|gb|ACH93022.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 239 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIP 188 Y I A Q I +P I L +L+N D+N S+N L L+ Sbjct: 128 YLIKGAMQGGITYIPKIKIFNNLIEVLENIKDNNFNTTKILLERNSKNKLIDLNI--KTE 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 NV ++IGPE G+ ++E + F T ++ P IL+++TA + A ++ + D Sbjct: 186 NVVVIIGPERGFITKETNLIKKYNFNT-YNISPNILKTETATIVASTIITSKIND 239 >gi|323126439|gb|ADX23736.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 252 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGTSALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196 P ++ EFL L ++DH I A E L +L + + + GP Sbjct: 143 PEVHLFEQKAEFLKSLSSFDH---IFIAYEETAKAGQLATLARELKEVKPGAKLLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + + + LGPRI+R++TA + A++ + Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSAI 239 >gi|21911245|ref|NP_665513.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS315] gi|28896621|ref|NP_802971.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes SSI-1] gi|21905458|gb|AAM80316.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28811875|dbj|BAC64804.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 249 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GPEGG 199 P ++ LKN I A E L L + + P +L GPEGG Sbjct: 143 PEVHLFEQKAEFLKNLSSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + + + LGPRI+R++TA + A++ Sbjct: 203 ISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237 >gi|94991269|ref|YP_599369.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS10270] gi|94544777|gb|ABF34825.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270] Length = 249 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 11/156 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GPEGG 199 P ++ LKN I A E L L + + P IL GPEGG Sbjct: 143 PEVHLFEQKAEFLKNLPSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + + + LGPRI+R++TA + A++ Sbjct: 203 ISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237 >gi|315654888|ref|ZP_07907793.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC 51333] gi|315490849|gb|EFU80469.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC 51333] Length = 300 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A+++GPEGG + E T P LGP +LR +A AA+A++Q+ G W Sbjct: 238 DIAVIVGPEGGITAPEL-TAFIAAGARPALLGPTVLRCSSAGPAALAVIQSQLGSW 292 >gi|315222477|ref|ZP_07864375.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211] gi|315188445|gb|EFU22162.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211] Length = 247 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 20/242 (8%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V+ P+ I+ + D ++ V+R+ E D ++L + L+++S + + VE Sbjct: 10 VENPVIIRDK-----DTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVLNLVEE 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMD 125 + V K ++L+++ QK+ E+G AI ++ + + Sbjct: 65 LPDNAELPIHVTVASGFPKGDKLEWVAQKATELGATAIWAFPADWSVAKWDGKKLAKKAE 124 Query: 126 RVRTYTISAAEQCDILTLPFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKLH 182 ++ + AAEQ +P + ++FL L +D IV +E+ S + Sbjct: 125 KLEKIVLGAAEQSKRNRVPEVRLFEKKIDFLDCLSQFDR--VIVAYEESAKEGESAALVK 182 Query: 183 AIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A+ + + + GPEGG E TL + LGPRILR++TA + A++ V Sbjct: 183 AVTGLKIGSRILFVFGPEGGLSPAEITTLEEAGAILA-GLGPRILRTETAPLYALSAVSV 241 Query: 240 IC 241 + Sbjct: 242 LI 243 >gi|320547793|ref|ZP_08042077.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447553|gb|EFW88312.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 246 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 13/222 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYI 85 D ++ +V+R+ E + ++L + L+K+ + RF++ + S + +V Sbjct: 20 DTVKHMFNVMRLTEDEEVVLVFDDHIKRLAKVVDSAEH-RFEIIKELNSNVEMPVEVTIA 78 Query: 86 FSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 K ++L+++ QK E+GM A V+ + D++ I AAEQ Sbjct: 79 AGFPKGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKKLAKKADKLAKIAIGAAEQSK 138 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195 +P + L D +I A E E +L + + + G Sbjct: 139 RNVIPGVTLFDKKAAFLAELDQFDKIFIAYEESAKEGETAILARELSQVKAGEKILFIFG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG +E + + LGPRI+R++TA + A++ V Sbjct: 199 PEGGISPDEIVAFEEKGGLK-IGLGPRIMRAETAPLYALSSV 239 >gi|153951044|ref|YP_001397414.1| hypothetical protein JJD26997_0171 [Campylobacter jejuni subsp. doylei 269.97] gi|152938490|gb|ABS43231.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. doylei 269.97] Length = 218 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 22/134 (16%) Query: 103 EMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILT-LPFIYPPTTLEFLLKNWD 160 E+G+ + V T ++Q N +++R IS+ EQC T + I +T EF+ K D Sbjct: 96 ELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPD 155 Query: 161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGGYHSEEKETLHSLPFVTPLSL 219 + F E +H + IGPEGG++++EK L F +SL Sbjct: 156 A-IMVDFQGEQQ------------SHFDEKELYFIGPEGGFNNDEK-----LLFNRKISL 197 Query: 220 -GPRILRSDTAAVA 232 IL+S TA +A Sbjct: 198 KNSNILKSQTAIIA 211 >gi|306821074|ref|ZP_07454692.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550910|gb|EFM38883.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 249 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 119/241 (49%), Gaps = 14/241 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F+D + KT + +++ VLR+ D + + + + E++ KI + K+ Sbjct: 5 MNRFFID-EVAGKTNNIIDKEDIKHISKVLRLDIDDEVEIVDREKKEYIMKIVDI-KNDN 62 Query: 67 FKVEYQSRSQTKQSD----VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 +E S ++ D + Y P K ++L+ + + + + G+ I PV + T Sbjct: 63 ICLEKVSSVDIQREDEIKVILYQGIP-KGSKLEDICKNTTQAGIYQIIPVRFKRCVATDV 121 Query: 123 N---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVF-ADETCGS-EN 176 N + R++ +A+QC +P I P + + ++K+ + N I+F DE + + Sbjct: 122 NDKKIQRLQKIMDESAKQCKRNEIPEIKMPLSFDEMMKDLEENDANILFYEDERNNTIRD 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++++ + + I+IGPEGG +E E + + LSLG RILR++ A++ A ++ Sbjct: 182 FVQRIREKKDMKRIGIIIGPEGGIDEKELEVMKK-GDIDILSLGNRILRTEIASIIAKSI 240 Query: 237 V 237 + Sbjct: 241 L 241 >gi|308063864|gb|ADO05751.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Sat464] Length = 226 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 27/239 (11%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGVQALEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R + I + EQC L ++P T + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFPNT--KEVLNAYPKASVLDFKGETLPASVGFEK 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S++A V ++VQ Sbjct: 180 ----------GVIIGPEGGFSGQERGCFKEREIYRIPLDM---VLKSESACVFVASVVQ 225 >gi|251781649|ref|YP_002995951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390278|dbj|BAH80737.1| hypothetical protein SDEG_0220 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 252 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 17/161 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L ++DH I A E L L + + P +L GP Sbjct: 143 PEVHLFEQKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKLLFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EGG E + + + LGPRI+R++TA + A++ + Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSAI 239 >gi|305681207|ref|ZP_07404014.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii ATCC 14266] gi|305659412|gb|EFM48912.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii ATCC 14266] Length = 239 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +A + +V ++IGPEGG E + + P+ LGP +LR+ +A + A+A + A+ Sbjct: 180 VAQVDSVVLIIGPEGGISPAELDAFTAA-GAHPVRLGPEVLRTASAGMVALAALGAVTDR 238 Query: 244 W 244 W Sbjct: 239 W 239 >gi|261839813|gb|ACX99578.1| hypothetical protein HPKB_1009 [Helicobacter pylori 52] Length = 226 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 37/244 (15%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSKISYVG 62 FV PL + K G+ Y +L R+K + L N KDG E K + + Sbjct: 3 FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH- 121 K+E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGGRKLEVMASKKT-----HLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEK 117 Query: 122 ---YNMDRVRTYTISAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++R + I + EQC ++ L P T E +LK + + F ET + Sbjct: 118 IDSAKLERFQKILIHSCEQCGRSALMELEVF--PNTKE-VLKAYPKASVLDFKGETLPAS 174 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234 EK ++IGPEGG+ E+E + PL + +L+S++A V Sbjct: 175 VGFEK----------GVIIGPEGGFSEPEREYFKEREIYRIPLDM---VLKSESACVFVA 221 Query: 235 ALVQ 238 ++ Q Sbjct: 222 SIAQ 225 >gi|319957587|ref|YP_004168850.1| hypothetical protein Nitsa_1856 [Nitratifractor salsuginis DSM 16511] gi|319419991|gb|ADV47101.1| protein of unknown function DUF558 [Nitratifractor salsuginis DSM 16511] Length = 225 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 19/231 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 F+ P +Q G+ Y YL V R++ D + L N +D + + R ++ Sbjct: 3 FLYHPEAGASQLLLEGESYRYLFKVRRLRSEDPLHLRNMRDDCLYTYRTETLDRRRARIA 62 Query: 71 YQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDR 126 S K + + I ++ + EMG+ I V +Q + +R Sbjct: 63 LVSCRDLKIVLNRKLHLGWCQIDPRNVEKTLPALNEMGVFGITFVRCERSQRQFEPDFER 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--CGSENSLEKLHAI 184 + I++++QC L + +LE L+ + F+D CG + + Sbjct: 123 LERILINSSQQCGRSELMRLETAESLEAFLERHPEAMLLDFSDRRLPCGGDWT------- 175 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +I++G EGG+ EE+ L S + L P ILRS+TA AA A Sbjct: 176 ----ERSIVVGCEGGFTPEER-ALFSEERIFGLE-TPTILRSETAVCAAAA 220 >gi|308062356|gb|ADO04244.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Cuz20] Length = 226 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 29/240 (12%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R + I + EQC ++ L P T E +LK + + F ET + E Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVF--PNTKE-MLKAYPKASVLDFKGETLPASVGFE 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 K ++IGPEGG+ +E+ + PL + +L+S++A V ++ Q Sbjct: 179 K----------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|42528220|ref|NP_973318.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC 35405] gi|41819490|gb|AAS13237.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC 35405] Length = 278 Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +V I IG E G+ E++ S F+ P S+G RILR++TA +A++++ A G W Sbjct: 223 SVLITIGSERGWTQNERDVFFSEGFI-PYSMGKRILRTETALTSALSVLLANNGFW 277 >gi|291548149|emb|CBL21257.1| RNA methyltransferase, RsmE family [Ruminococcus sp. SR1/5] Length = 95 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAV 231 G + + E + +I ++ + IGPEGG+ EE+E ++ P++LG RILR++TA + Sbjct: 25 GMKETKELIRSIEPGKSIGVFIGPEGGF--EEQEVADAMEAGAKPITLGHRILRTETAGL 82 Query: 232 AAMALV 237 A ++++ Sbjct: 83 AVLSVL 88 >gi|307637746|gb|ADN80196.1| Ribosomal RNA small subunit methyl transferase E [Helicobacter pylori 908] gi|325996346|gb|ADZ51751.1| Ribosomal RNA small subunit methyltransferase E [Helicobacter pylori 2018] gi|325997935|gb|ADZ50143.1| 16S ribosomal RNA methyltransferase [Helicobacter pylori 2017] Length = 226 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQPLGVIPSKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + + +L + + F E + + EK Sbjct: 122 KLERFQKILIHSCEQCGRSVLMELEAFSNTKEVLNAYPKASVLDFNGEALPASANFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 I+IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 --------GIIIGPEGGFSEQEREYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225 >gi|209878384|ref|XP_002140633.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris RN66] gi|209556239|gb|EEA06284.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris RN66] Length = 377 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 16/162 (9%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ------CDILTLPFIY 147 D ++Q + +G+G I V T ++ ++ N ++ +I + Q C+ L P +Y Sbjct: 168 FDKVLQYAASIGVGRIIFVCTNKSEKSYLNSSKLHRESIHHSIQLGLEQACNTL-FPEVY 226 Query: 148 P----PTTLEFLLKNW-DHNCQI-VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 + L++L ++ D N + + AD S + + H + I +GPEGG+ Sbjct: 227 LYASWNSCLKYLRDDFLDKNTMLGIIADNK--SSTIISDVGLQRHTGSAIIAVGPEGGWS 284 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E L L F + S+G R+L+ + A +A + V+ + D Sbjct: 285 QSEIGDLIGLGFKS-CSIGSRVLKVEAAMIALCSQVELLLRD 325 >gi|15675777|ref|NP_269951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes M1 GAS] gi|71911507|ref|YP_283057.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS5005] gi|13623001|gb|AAK34672.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|71854289|gb|AAZ52312.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005] Length = 249 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L ++DH I A E L L + + P IL GP Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG E + + + LGPRI+R++TA + A++ Sbjct: 200 EGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALS 237 >gi|317182333|dbj|BAJ60117.1| hypothetical protein HPF57_1043 [Helicobacter pylori F57] Length = 226 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVVASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|302142202|emb|CBI19405.3| unnamed protein product [Vitis vinifera] Length = 167 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 30/161 (18%) Query: 53 EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGA---- 108 E +K+ +G S RF ++ ++ +++ +FS ++ N D + + +GA Sbjct: 12 ELFTKLVLIGASPRFLNDHDYHGGFEEGEIEKVFSAMEAN-YDAWVHGFAPLSVGADVPA 70 Query: 109 -----------IRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 +RP IT + T +N D + C I T + PT++ LK Sbjct: 71 AVREFSRTLFNMRPDITLFVSRTIFNSDLRGVLGLVKVPCCIIQTAKDVSVPTSVALYLK 130 Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA--ILIGP 196 N G N++E L+ H+P+++ +L+ P Sbjct: 131 NH------------LGGRNTVEMLNVEGHLPHLSAPMLLAP 159 >gi|326773557|ref|ZP_08232840.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505] gi|326636787|gb|EGE37690.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505] Length = 270 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 48/241 (19%), Positives = 97/241 (40%), Gaps = 23/241 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSRSQTKQSD 81 +G + + V R++ + + L +G + +++ G R V R + + Sbjct: 31 TGPEARHAVTVKRLRAQERVDLVDGAGLRLVCEVTGAGVGGAKDRLAVRVLERVEEPEPS 90 Query: 82 VQYIF--SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133 ++ + K R + ++ + E+G+G + P V R + + Sbjct: 91 LRLTLVQALAKGGRDEQAVETATEVGVGLVLPWQSERCVSVWQGAKQAKGRQRWQATALQ 150 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGS-ENSLE--KLHAI 184 AA+Q +P + L+ +W +V +E ++E +L A Sbjct: 151 AAKQARRARVPEVEEVRDTRRLV-DWVGQTVRGGGVVLVLHEEASTPISTAMESVRLPAP 209 Query: 185 AHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P +A+++GPEGG EE L + T + LGP ++R+ +A A+A++ G Sbjct: 210 GEAPRALAVVVGPEGGISPEETAALETA-GATTVRLGPHVMRTASAGPVALAVLAHASGL 268 Query: 244 W 244 W Sbjct: 269 W 269 >gi|306826580|ref|ZP_07459887.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431218|gb|EFM34220.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 249 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L ++DH I A E L L + + P IL GP Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG E + + + LGPRI+R++TA + A++ Sbjct: 200 EGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALS 237 >gi|300858951|ref|YP_003783934.1| hypothetical protein cpfrc_01534 [Corynebacterium pseudotuberculosis FRC41] gi|300686405|gb|ADK29327.1| hypothetical protein cpfrc_01534 [Corynebacterium pseudotuberculosis FRC41] gi|302206652|gb|ADL10994.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis C231] gi|302331201|gb|ADL21395.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis 1002] gi|308276895|gb|ADO26794.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis I19] Length = 256 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 28/236 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFN--GKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83 G + + V R+ G+ I L + G E L + + +VE S +Q+ Sbjct: 32 GAEGRHAVSVKRIVAGERIKLIDAHGAYAEALVTETSGKDRLAARVEI-SETQSPVGPSV 90 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136 +F I K+ R + + + G+ AI P + +++ ++ + R ++AA+ Sbjct: 91 TVFQAIPKSERSELAVDLLTQGGVDAIVPWEAQRCVAKWSGTKREKSVQKWRAAAVAAAK 150 Query: 137 QCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----- 188 Q +P I P + L LK + ++ ++ A A +P Sbjct: 151 QSRRSAIPTIGSPINTSELALRLKTEGFDLVLMLHEDAQ---------QAFAALPLQQAS 201 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A++IGPEGG EE L + LGP +LR+ +A + A+A + + W Sbjct: 202 SIALIIGPEGGIGQEESSELQA-AGARLAKLGPEVLRTASAGIVALAAIGVLTSRW 256 >gi|111221445|ref|YP_712239.1| 16S ribosomal RNA methyltransferase RsmE [Frankia alni ACN14a] gi|111148977|emb|CAJ60657.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 255 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Query: 188 PNVA----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PN A +++GPEGG E + LH V LGP +LR+ TA V A ++V A G Sbjct: 189 PNPAAEILLVVGPEGGIADAEVDALHQAGAVV-ARLGPTVLRTSTAGVVASSVVLADLGR 247 Query: 244 W 244 W Sbjct: 248 W 248 >gi|311741359|ref|ZP_07715183.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303529|gb|EFQ79608.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 252 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 25/236 (10%) Query: 10 LFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGK-S 64 +F+ L G+A SG + + V RM EG+ + L +G L+ + GK S Sbjct: 5 VFIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDS 64 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + V+ + V + + K+ R + + + + G I R V + Sbjct: 65 LEGTVDSIDTAPVPTPRVSVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGK 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + + SAA+Q +P + P T L++ D + ++ Sbjct: 125 KAPKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLVQELTGG-----RDGASSNAPTV 179 Query: 179 EKLH-----AIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 LH +I +P +V +L+GPEGG E + L TP+ LGP +LR+ Sbjct: 180 LVLHEEATVSIKDVPLADDVVLLVGPEGGIGDAELDRLKEA-GATPIKLGPEVLRT 234 >gi|56808290|ref|ZP_00366055.1| COG1385: Uncharacterized protein conserved in bacteria [Streptococcus pyogenes M49 591] gi|209560117|ref|YP_002286589.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes NZ131] gi|209541318|gb|ACI61894.1| hypothetical protein Spy49_1637c [Streptococcus pyogenes NZ131] Length = 249 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 11/156 (7%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GPEGG 199 P ++ LKN I A E L L + + P IL GPEGG Sbjct: 143 PEVHLFEHKAEFLKNLPSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + + + LGPRI+R++TA + A++ Sbjct: 203 ISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237 >gi|94989324|ref|YP_597425.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS9429] gi|94993212|ref|YP_601311.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS2096] gi|94542832|gb|ABF32881.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429] gi|94546720|gb|ABF36767.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096] Length = 249 Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L ++DH I A E L L + + P IL GP Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG E + + + LGPRI+R++TA + A++ Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALS 237 >gi|297626078|ref|YP_003687841.1| hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921843|emb|CBL56403.1| Hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 249 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 13/213 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDVQ 83 G + + A V RM+ G+++L+ +G I V K S+ +V E +R V Sbjct: 23 GPEGRHAATVKRMRVGESVLVADGAGAGLRGVIDSVAKNSVSVRVGELIARRPAALHTV- 81 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K R D ++ E+G+ I I R+ + + R+ +A +Q Sbjct: 82 AVQALAKGERSDIAVEAMTELGVDEIIAWQASRSIVRWEAKAEKGLAKWRSSARAATKQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P + T + + + +V +E + L ++ +IGPEG Sbjct: 142 RRFRIPQVSTAGTPGVVERLARADLALVLHEEATTPLSGL----SVPSAGECVFVIGPEG 197 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G EE E +SL +LR+ TA V Sbjct: 198 GISPEELEAFRGA-GARLVSLSDAVLRASTAGV 229 >gi|15612072|ref|NP_223724.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori J99] gi|8928475|sp|Q9ZKD2|RSME_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|4155595|gb|AAD06587.1| putative [Helicobacter pylori J99] Length = 226 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGVQPLEIMANKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + + LK + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSVLMELEAFSNTKEALKAYPKASVLDFNGETLPASADFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225 >gi|257483560|ref|ZP_05637601.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 88 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 3 LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGK 58 >gi|224370617|ref|YP_002604781.1| 16S ribosomal RNA methyltransferase RsmE [Desulfobacterium autotrophicum HRM2] gi|223693334|gb|ACN16617.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 236 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +V + +GPEGG+ E +T L F T ++LGPRILR +TA Sbjct: 187 SVTLAVGPEGGFIQREVDTFEQLGF-TSVTLGPRILRVETA 226 >gi|306818068|ref|ZP_07451799.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304649032|gb|EFM46326.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 342 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E E ++ L LG +LR TA A+A++QA G W Sbjct: 288 EIAVVVGPEGGITEGELEGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 342 >gi|942589|gb|AAC44027.1| unknown [Mycoplasma iowae] Length = 145 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 103 EMGMGAIRPVITRYTQNTHY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 E+ + I PV+ +QN Y + R+ + + +Q + + I + LL+ Sbjct: 4 ELNISKIVPVVFSRSQNNIYLDYKRLNRIVVESCKQSNRVNPLIIENQIKFDELLEKIKG 63 Query: 162 NCQIVFAD-ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220 + + ++ ET + N+ + I N +IG EGG+ +E L+SL P++L Sbjct: 64 STTFLCSEKETSKNINNYDLKIKNGDIIN--FIIGCEGGFTIDELNQLNSLTL--PITLT 119 Query: 221 PRILRSDTAAVAAMALV 237 ILRS+TAA+ A +++ Sbjct: 120 KTILRSETAAIYAASIL 136 >gi|38234290|ref|NP_940057.1| hypothetical protein DIP1719 [Corynebacterium diphtheriae NCTC 13129] gi|38200553|emb|CAE50248.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 252 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 36/239 (15%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQ 83 G + + V RM G+ I L +G+ G W + S GKS ++ + + Sbjct: 30 GAEGRHAVSVKRMTAGEQIKLIDGRGG-WATATVASTSGKSTLNLQVFECNEEATPTPTV 88 Query: 84 YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 +F I K+ R + + + G AI P + R + A +L Sbjct: 89 TVFQAIPKSERSELAVDLLTQGGADAIVP----------WEAHRCVAKWVGAKRSKGVLK 138 Query: 143 ----------------LPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185 +P I P T + + + + +V ++ +++ ++ Sbjct: 139 WQQAAIAAAKQSRRTRIPEIAEPMTTAQIAEQLEQFDVVLVLHEDAAVPFATVD----VS 194 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A++IGPEGG +E E + LGP +LR+ +A + A+A + W Sbjct: 195 TAKSIALIIGPEGGVSPDEAEAFRKA-GARAVKLGPEVLRTASAGIVALAALGVQTSRW 252 >gi|217034479|ref|ZP_03439891.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10] gi|216943081|gb|EEC22558.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10] Length = 226 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKI 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC TL + + LK + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSTLMELEVFLNTKEALKAYPKASVLDFKGETLPASVDFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S+ A V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQERGYFKEREIYRIPLDM---VLKSENACVFVASVAQ 225 >gi|71904341|ref|YP_281144.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS6180] gi|71803436|gb|AAX72789.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180] Length = 249 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L +DH I A E L L + + P IL GP Sbjct: 143 PEVHLFEHKAEFLKSLSGFDH---IFVAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG E + + + LGPRI+R++TA + A++ Sbjct: 200 EGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237 >gi|94995181|ref|YP_603279.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS10750] gi|94548689|gb|ABF38735.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750] Length = 249 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 17/159 (10%) Query: 90 KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK E+G A+ V+ + D++ + AAEQ + Sbjct: 83 KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142 Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196 P ++ EFL L ++DH I E L L + + P IL GP Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIGYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 EGG E T V + LGPRI+R++TA + A++ Sbjct: 200 EGGISPAEI-TQFEAAGVIKVGLGPRIMRAETAPLYALS 237 >gi|203287531|ref|YP_002222546.1| hypothetical protein BRE_65 [Borrelia recurrentis A1] gi|201084751|gb|ACH94325.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 239 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 4/115 (3%) Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIP 188 Y I A Q I +P I L +L+N D N S+N L L+ Sbjct: 128 YLIKGAMQGGITYIPKIKIFNNLIEVLENIKDDNFNTTKILLERNSKNKLIDLNI--KTE 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 NV ++IGPE G+ ++E + F T ++ P IL+++TA + A ++ + D Sbjct: 186 NVVVIIGPERGFITKETNLITKYNFNT-YNISPNILKTETATIVASTIITSKMND 239 >gi|307127980|ref|YP_003880011.1| hypothetical protein SP670_1859 [Streptococcus pneumoniae 670-6B] gi|306485042|gb|ADM91911.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] Length = 247 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 15/224 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88 ++ V+R+KE D + L + L+++ V ++ +F++ + + VQ S Sbjct: 23 KHMFQVMRLKEDDEVTLVFDDGIKRLARVLDV-EARQFEL-VEELDDNVELPVQVTISSG 80 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 K ++L+++ QK E+G I ++ + ++++ + AAEQ Sbjct: 81 FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPE 197 +P I+ L D +I+ A E E L A+ + A L+ GPE Sbjct: 141 VVPSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAALIKAVTGLEKGAKLLFIFGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG E E + V LGPRILR++TA + A++ + + Sbjct: 201 GGLSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243 >gi|317012853|gb|ADU83461.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Lithuania75] Length = 226 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPILKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I++ EQC L + + + +L + + F ET + EK Sbjct: 122 KLERFQKILINSCEQCGRSALMELEVFSNTKEMLNAYPKASVLDFNGETLPASADFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ E+E + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSEPEREYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225 >gi|225164860|ref|ZP_03727082.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] gi|224800529|gb|EEG18903.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] Length = 169 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%) Query: 100 KSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 ++ +G+ AI V T Y +T ++ R + + AA+Q LP + TL Sbjct: 22 EATTLGVRAIHFVTTEKTDPNYASSTLWSSGEWRRHLVDAAQQAFDTRLPLVTWDRTLAQ 81 Query: 155 LLKNW------DHNCQIVFAD-ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 +L + D ++ + E SL + A + + IGPE G+ +++ Sbjct: 82 ILSDAVGDDVSDSPLRVALDNYEATVGLRSLTRQTAT----DACVAIGPERGWGERDRQQ 137 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + F T LGPR+LR +T VAA+ A Sbjct: 138 LRAAGF-TLAHLGPRVLRVETPVVAALPFFSA 168 >gi|313157414|gb|EFR56837.1| RNA methyltransferase, RsmE family [Alistipes sp. HGB5] Length = 237 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 25/219 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82 S ++ + VLR+ GD + + +G+ + +I+ K +V E ++ + + Sbjct: 17 SEEESKHCVRVLRLGRGDTLHITDGRGNLFCCEITDDNPKRCTVRVTETRAGWEALPYSL 76 Query: 83 QYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 +P K +R ++ ++K+ E+G+G I P+ T + + + +R +A +Q Sbjct: 77 TMAVAPTKNADRFEWFLEKATEVGVGTIIPLETEHCERRVFKPERGERVITAAMKQSLKA 136 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSLEKLHAIAHIPN-------V 190 P + P L + + F C S E A++P Sbjct: 137 YRPTLRP-------LTPFGEAAAMPFEGRKFIAHCAPAQSPE---GKAYLPATLRRGEAA 186 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 ILIGPEG + EE + F ++LG + LR++TA Sbjct: 187 LILIGPEGDFSPEEIAFARANGFEE-ITLGAQRLRTETA 224 >gi|271963819|ref|YP_003338015.1| hypothetical protein Sros_2291 [Streptosporangium roseum DSM 43021] gi|270506994|gb|ACZ85272.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 243 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 G + + A V R++ G+ + L +G + G+ S+R +V + + + Sbjct: 21 GGPEGRHAAAVRRLRAGERLDLTDGAGTVAECVVRDAGRDSLRVEVLRRYEVAAPRPRLV 80 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137 + K +R + ++ E G+ I P +T++ + +++R R+ A +Q Sbjct: 81 VVQGLPKGDRGELAVEMMTEAGVDVIVPWAAARCVTQWKGERAVKSLNRWRSTAREAGKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP + P T ++ V E S S +L I V G Sbjct: 141 SRRFHLPEVTEPATTAGVVALLSAAALGVVLHEEAASPLSTLELPGAGDIVVVVGPEG-- 198 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++E+ P LGP +LR+ TA VAA A++Q G W Sbjct: 199 --GVADEEIGAFREAGAVPALLGPTVLRTSTAGVAAAAVLQTRTGRW 243 >gi|269976809|ref|ZP_06183784.1| protein involving differentiation [Mobiluncus mulieris 28-1] gi|269935006|gb|EEZ91565.1| protein involving differentiation [Mobiluncus mulieris 28-1] Length = 337 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E E ++ L LG +LR TA A+A++QA G W Sbjct: 283 EIAVVVGPEGGITEGELEGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 337 >gi|331082512|ref|ZP_08331637.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400490|gb|EGG80120.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium 6_1_63FAA] Length = 151 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 2/109 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R FV+ Q SG +++ +VLRMK + IL+ +G+D E+ I +G+ Sbjct: 3 RFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEILA 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITR 115 + Y + + S Y+F + K+++++ +IQK+VE+G+ + PV ++ Sbjct: 63 HIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVASK 111 >gi|307330999|ref|ZP_07610130.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu 4113] gi|306883385|gb|EFN14440.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu 4113] Length = 247 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 12/227 (5%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQ 83 G + + V R++ G+ ++L +G ++ V R ++ Q D + Sbjct: 24 GPEGRHAVSVRRLRVGEPVVLTDGHGTGVQGTVAAVEGKDRLQIAVDEVRQEAAPDPRIT 83 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAEQ 137 + + K +R + ++ E G+ A+ P IT++ + + R+ A +Q Sbjct: 84 VVQALPKGDRGELAVETMTETGVDAVVPWSASRCITQWKGERGLKALGKWRSTAREAGKQ 143 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LT P + T + + E G + +L A I +++GPE Sbjct: 144 SRRLTFPEVPDAMTTKQVALLLAEAAFAAVLHEEGGEPLASAQLPARGEI---VLVVGPE 200 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GG EE P LGP +LR+ TA AA AL+ G W Sbjct: 201 GGVSPEELAAFAEA-GARPYRLGPSVLRTSTAGTAAAALLLGRTGRW 246 >gi|145223290|ref|YP_001133968.1| hypothetical protein Mflv_2703 [Mycobacterium gilvum PYR-GCK] gi|315443750|ref|YP_004076629.1| hypothetical protein Mspyr1_21400 [Mycobacterium sp. Spyr1] gi|145215776|gb|ABP45180.1| protein of unknown function DUF558 [Mycobacterium gilvum PYR-GCK] gi|315262053|gb|ADT98794.1| conserved hypothetical protein TIGR00046 [Mycobacterium sp. Spyr1] Length = 251 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 33/238 (13%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83 GD+ H+ A V R + G+++ L +G + V K R Q R V Sbjct: 21 GDEGHHAATVCRTRVGEHLDLSDGAGAVAHCVVEDVAKG-RLSARVQDRILVPVPTPAVT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRY--TQNTHYNMDRVRTYTISAAE 136 + + K++R + I+ + E G A + R+ + R R SAA Sbjct: 80 VVQALPKSDRSELAIELATEAGADAFLGWQAARCVARWDGAAKVDKGLRRWRAVARSAAR 139 Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIP------- 188 Q +P + P + + L+ D V LH A P Sbjct: 140 QSRRPHIPEVRGPVSTQDLVGFTRDAGPATVLV------------LHESATRPLTDADLT 187 Query: 189 --NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG EE L + + LGP +LR+ TAA A+ + + G W Sbjct: 188 ARSLTLVVGPEGGVADEELAALTDAGAMA-VRLGPTVLRTSTAAAVALGALGVLTGRW 244 >gi|326381611|ref|ZP_08203305.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis NRRL B-59395] gi|326199858|gb|EGD57038.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis NRRL B-59395] Length = 250 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 24/218 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQ 79 SG + + V R+ G++++L +G+ ++ V R +V++ +R++ Sbjct: 21 SGPEGRHAVTVTRIASGESVILGDGRGTTAECEVVDVAGKDRLTVRAGRVQFHTRAKPLV 80 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTIS 133 + VQ + K R + + E G+ AI P I R++ + +++ R+ + Sbjct: 81 TIVQALP---KAERSELAVDLMTEAGVDAIVPWQSSRSIARWSGSKAVKGVEKWRSTAAT 137 Query: 134 AAEQCDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSE--NSLEKLHAIAHIP 188 AA+Q +P + T + L IV GS S++ + P Sbjct: 138 AAKQARRAWIPEVADLAGTTDVRDLAARVTAGGGIVALLHEDGSVPFRSID----FSDAP 193 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 V +IGPEGG E L +L T + LGP +LR+ Sbjct: 194 EVVFVIGPEGGLADSEIADLTALGG-TSVVLGPEVLRT 230 >gi|219685331|ref|ZP_03540150.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498 methyltransferase 1) [Borrelia garinii Far04] gi|219673104|gb|EED30124.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498 methyltransferase 1) [Borrelia garinii Far04] Length = 98 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++S +KL I + N I++GPE G+ +EK+ + F + S+ ILR++TA + A Sbjct: 30 KDSKKKLIDIEQVNNATIIVGPERGFTEKEKQLIMQYNF-SSCSISSNILRTETAIITA 87 >gi|302545472|ref|ZP_07297814.1| RsmE family RNA methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302463090|gb|EFL26183.1| RsmE family RNA methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 289 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 20/231 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQY 84 G + + V R++ G+ ++L +G ++ V R VE R + S Sbjct: 66 GPEGRHAVSVKRLRAGEAVILTDGAGTGVSGTVAAVEGKDRLLVEVDGVRHEAAPSPRIT 125 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAEQ 137 + + K +R + ++ E G+ AI P IT++ + + + R+ A +Q Sbjct: 126 VVQALPKGDRGEVAVETMTETGVDAIVPWTAARCITQWKGERGQKALGKWRSTAREAGKQ 185 Query: 138 CDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAIL 193 L P + TT E D + V +E GS+ A A +P+ + ++ Sbjct: 186 SRRLIFPEVADAMTTKEVARLLADADLAAVLHEE--GSDP-----LATAQLPHEGHIVLV 238 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG EE + P LGP +LR+ TA AA AL+ G W Sbjct: 239 VGPEGGVSPEELAAFAAAGG-RPYRLGPSVLRTSTAGTAAAALLLGRTGRW 288 >gi|255323732|ref|ZP_05364860.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium tuberculostearicum SK141] gi|255299222|gb|EET78511.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium tuberculostearicum SK141] Length = 252 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 29/238 (12%) Query: 10 LFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGK-S 64 +F+ L G+A SG + + V RM EG+ + L +G L+ + GK S Sbjct: 5 VFIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDS 64 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + V+ + V + + K+ R + + + + G I R V + Sbjct: 65 LEGTVDSIDTAPEPTPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGK 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + + SAA+Q +P + P T L+ Q + S N+ Sbjct: 125 KAPKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLV-------QELTGRRDGASSNAP 177 Query: 179 -------EKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 E +I +P +V +L+GPEGG E + L TP+ LGP +LR+ Sbjct: 178 TVLVLHEEATASIKDVPLTEDVVLLVGPEGGIGDAELDRLKEA-GATPIKLGPEVLRT 234 >gi|227874773|ref|ZP_03992926.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC 35243] gi|227844548|gb|EEJ54704.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC 35243] Length = 337 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E E ++ L LG +LR TA A+A++QA G W Sbjct: 283 EIAVVVGPEGGITEGELEGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 337 >gi|256832772|ref|YP_003161499.1| hypothetical protein Jden_1548 [Jonesia denitrificans DSM 20603] gi|256686303|gb|ACV09196.1| protein of unknown function DUF558 [Jonesia denitrificans DSM 20603] Length = 257 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 25/238 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84 G + + V R G+ I + +G I++V G+ + V S Q + Sbjct: 26 GVEGRHAGVVQRRSVGEAIDIVDGHGTRLSCTITHVSGEHLDLLVTSVSHESCGQYRLTL 85 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-------VITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K +R + I+ + E+G+ + P V+ R + + V T SA +Q Sbjct: 86 VQALAKGDRDELAIEAATEVGVDRVIPWQADRSIVVWRGARAAKSHARWVATVR-SAMKQ 144 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIPNVAILI 194 LP + P T + L+ Q +V+ E++ L + P L Sbjct: 145 ARRARLPMVEQPVTSQQLVDVIAETTQTGGVVYVLH----ESATTALTSQPRPPGGEELA 200 Query: 195 --------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG E E + L LGP +LR+ TA A+AL+ A G W Sbjct: 201 PVDVVVVVGPEGGISDSELEKFTAAGAQAVL-LGPHVLRTSTAGPVALALLSASTGRW 257 >gi|25028744|ref|NP_738798.1| hypothetical protein CE2188 [Corynebacterium efficiens YS-314] gi|259507805|ref|ZP_05750705.1| RsmE family RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494030|dbj|BAC18998.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164598|gb|EEW49152.1| RsmE family RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 241 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 41/241 (17%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82 +G + + V R+ G+ ++L +G +++ V R V +S + D V Sbjct: 21 TGPEGRHAVTVKRITPGERVMLIDGHGTARTCQVTAVSGRDRMDVVVESVEEIPPPDPRV 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + + + G I + I ++ ++ + + +AA+Q Sbjct: 81 TIVQAIPKSERSELTVDLLTQAGADRIVAWQSQRTIAKWAGKEAKSLTKWQAAAEAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK------LHAIAHIP--- 188 T+P ++V +T G + +E+ LH A P Sbjct: 141 SRRATIP-------------------EVVGVVDTAGVDKLIEEADLAIILHEEASQPFRE 181 Query: 189 -----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +V ++IGPEGG EE + T + LGP +LR+ +A + A+A + + Sbjct: 182 LNFTGDVVVIIGPEGGVSPEEIHRFTAAGAHT-VKLGPEVLRTASAGMVALAAIGVLSNR 240 Query: 244 W 244 W Sbjct: 241 W 241 >gi|119952865|ref|YP_945074.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae 91E135] gi|119861636|gb|AAX17404.1| hypothetical protein BT0062 [Borrelia turicatae 91E135] Length = 240 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSENSLEKLHAIA 185 Y I A Q I +P + L +LKN ++ +I+ E S+N L L+ Sbjct: 128 YLIEGAMQGGITYIPKVNILNNLREVLKNTEYEGSNTTKILLERE---SKNKLVDLNI-- 182 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 N ++IGPE G+ ++E + F ++ ILR++TA + A A++ + Sbjct: 183 KTKNTVVIIGPERGFITKEINLIKEYNF-NAYNISSNILRTETATIVASAIITS 235 >gi|220918289|ref|YP_002493593.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] gi|219956143|gb|ACL66527.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] Length = 247 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 P A+ IGPEGG+ E L F P +LGPR+LR D A Sbjct: 188 PRAALAIGPEGGWTPYEAAALRDRGF-APFTLGPRVLRVDAA 228 >gi|71029718|ref|XP_764502.1| hypothetical protein [Theileria parva strain Muguga] gi|68351456|gb|EAN32219.1| hypothetical protein TP04_0865 [Theileria parva] Length = 295 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 13/159 (8%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE----QCDILTLPFIYPP 149 LD ++Q S +G+G I + + + ++ ++ +I+ + Q + TL P Sbjct: 129 LDKLLQYSASIGVGNIDLICSSRVEKSYLASHKLSKESINKSLILGLQQGVCTL---MPE 185 Query: 150 TTLEFLLKNWDHNC-QIVFADETCG---SENSLEKLHAIAHIPN-VAILIGPEGGYHSEE 204 + + ++ C Q +A + SE +L L H+ + + IGPEGG+ E Sbjct: 186 VNMYLSMGEYERACKQKDYAMKLIAHPDSEETLGSLKLNTHVKGPILVAIGPEGGWLDHE 245 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 L FV L RILR++ AA A ++ + + D Sbjct: 246 LTYYKKLGFVQ-FKLTDRILRTEVAAAAILSQMSLLLND 283 >gi|208434976|ref|YP_002266642.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27] gi|208432905|gb|ACI27776.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27] Length = 226 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 37/244 (15%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59 FV PL + K G+ Y +L R+K + L N KDG E K + Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 VG + +E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARL---LEVMASKKT-----HLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQR 114 Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++R + I + EQC L + + + LK + + F ET + Sbjct: 115 NEKIDSAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPAS 174 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234 EK ++IGPEGG+ E+E + PL + +L+S++A V Sbjct: 175 MDFEK----------GVIIGPEGGFSEPEREYFKEREIYRIPLDM---VLKSESACVFVA 221 Query: 235 ALVQ 238 ++ Q Sbjct: 222 SIAQ 225 >gi|308811582|ref|XP_003083099.1| unnamed protein product [Ostreococcus tauri] gi|116054977|emb|CAL57054.1| unnamed protein product [Ostreococcus tauri] Length = 317 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 58/255 (22%), Positives = 100/255 (39%), Gaps = 40/255 (15%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-------GEWLSK 57 S L R +VD L T + S ++ + A LR++ G + + +G G+ L Sbjct: 42 STLHRFYVDEELRANTTTRLSREETRHAAKALRLRPGVAVEVCDGVGRLARATLGDVLDG 101 Query: 58 ISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT--- 114 +V +V+ RS DV F+ +K R D++++K E+G + P++ Sbjct: 102 -RFVVDVEDVRVDVDGRSSGIDWDVVCAFAGLKGGRGDWLVEKCAELGARRLVPLLASRS 160 Query: 115 --RYTQNTHYNMDRVRTYT------ISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQI 165 R T+ D R AA + + TT +E L C+ Sbjct: 161 ERRSTRGEDGEGDARRGRAGRWDRVARAASKQSLRARELAVGETTDVEAL-------CRE 213 Query: 166 VFADETCGSENSLEKLHAIAHIPNVA------------ILIGPEGGYHSEEKETLHSLPF 213 + + G+ +L L A + +VA +++GPEG + EE + Sbjct: 214 MAREREVGTRVTLLALQGGAPVADVAREVGPRAMRAGRVVVGPEGDFTDEEVRAMIR-AG 272 Query: 214 VTPLSLGPRILRSDT 228 P+ LG LR +T Sbjct: 273 ARPIGLGTLRLRVET 287 >gi|315586970|gb|ADU41351.1| RsmE family RNA methyltransferase [Helicobacter pylori 35A] Length = 226 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFSNTKEVLNAYPKASVLDFKGETLPASVDFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+E + PL + +L+S++ V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESVCVFVASVAQ 225 >gi|317177831|dbj|BAJ55620.1| hypothetical protein HPF16_1023 [Helicobacter pylori F16] Length = 226 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKI 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEMLNAYPKASVLDFKGETLSASVDFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQERGYFKECEIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|148239823|ref|YP_001225210.1| hypothetical protein SynWH7803_1487 [Synechococcus sp. WH 7803] gi|147848362|emb|CAK23913.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 251 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 9/207 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 + YL VLR++ G + + +G + ++++ G+ + +R QT + + Sbjct: 29 EARYLKRVLRLRPGAEVHVVDGCGQLFGTRLTPEGE-LSLDRGADARLQTLAAPQPRLGL 87 Query: 88 PIKTNR--LDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 + R +D +++ + E+G+ ++P+ R DR A EQC+ L P Sbjct: 88 AVALMRRGMDEVMRMACELGVDHLQPLQAQRSVPQAECRPDRWGVILREAVEQCERLWAP 147 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA---ILIGPEGGYH 201 + P + + + A + L L A AH I IGPEGG+ Sbjct: 148 ELLPVLSSDDWWNGPSGQSLRLIAVTRDQASTDLSTLLA-AHGAGAGCCWIAIGPEGGWT 206 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDT 228 S+E + + + LG ILRS T Sbjct: 207 SDELRSAAEAGWCG-VGLGDTILRSST 232 >gi|301066583|ref|YP_003788606.1| hypothetical protein LCAZH_1524 [Lactobacillus casei str. Zhang] gi|300438990|gb|ADK18756.1| conserved hypothetical protein [Lactobacillus casei str. Zhang] Length = 246 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 10/155 (6%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 V+ + K ++ ++++QK+ E+G I ++ + + R++ +AA Sbjct: 76 VEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERVVKKIARLQEIAKNAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194 EQ +P + L + + + ++V +E+ + A++ P ++ ++ Sbjct: 136 EQSHRNQVPDVTMYAKLNQVGQTAE--AKLVAYEESAKQGEHGALISALSPRPASLCVVF 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG EE L F+ LGPRILR++TA Sbjct: 194 GPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETA 227 >gi|116495024|ref|YP_806758.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334] gi|191638529|ref|YP_001987695.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus casei BL23] gi|227534966|ref|ZP_03965015.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105174|gb|ABJ70316.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334] gi|190712831|emb|CAQ66837.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus casei BL23] gi|227187423|gb|EEI67490.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327382565|gb|AEA54041.1| hypothetical protein LC2W_1708 [Lactobacillus casei LC2W] gi|327385762|gb|AEA57236.1| hypothetical protein LCBD_1740 [Lactobacillus casei BD-II] Length = 246 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 10/155 (6%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 V+ + K ++ ++++QK+ E+G I ++ + + R++ +AA Sbjct: 76 VEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERVVKKIARLQEIAKNAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194 EQ +P + L + + + ++V +E+ + A++ P ++ ++ Sbjct: 136 EQSHRNQVPDVTMYAKLNQVGQTAE--AKLVAYEESAKQGEHGALISALSPRPASLCVVF 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG EE L F+ LGPRILR++TA Sbjct: 194 GPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETA 227 >gi|116670781|ref|YP_831714.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter sp. FB24] gi|116610890|gb|ABK03614.1| protein of unknown function DUF558 [Arthrobacter sp. FB24] Length = 258 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 20/236 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + V R+ G+++ + +G ++ V + VE ++ D++ + Sbjct: 26 GAEARHAITVKRIAVGESVDIADGAGKRLTGTVAAVDQG-ELTVECSVLETEERPDLRLV 84 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY----TQNTHYNMDRVRTYTISA 134 + K +R + + + E+G+ A+ P I R+ H V T Sbjct: 85 LVQALAKGDRDELAAETATELGIDAVIPWQSERSIVRWKGERAAKAHAKWQSVVTAAAKQ 144 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHIPN---- 189 A + I + L+ + D I+ D LEK H P Sbjct: 145 ARRAWIPEVRSAVDGAGLQSAVAAADLAI-ILHEDAVRPLRAVLEKWHDGEGGTPGSGPR 203 Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG E L S VT L LG +LRS TA AA L I G W Sbjct: 204 EILLIVGPEGGISPREVTKLCSAGAVTAL-LGHHVLRSSTAGPAATVLASDILGRW 258 >gi|50842401|ref|YP_055628.1| hypothetical protein PPA0917 [Propionibacterium acnes KPA171202] gi|282854139|ref|ZP_06263476.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139] gi|50840003|gb|AAT82670.1| conserved protein DUF558 [Propionibacterium acnes KPA171202] gi|282583592|gb|EFB88972.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139] gi|314923116|gb|EFS86947.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL001PA1] gi|314966883|gb|EFT10982.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL082PA2] gi|314981227|gb|EFT25321.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL110PA3] gi|315091796|gb|EFT63772.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL110PA4] gi|315093196|gb|EFT65172.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL060PA1] gi|315103299|gb|EFT75275.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL050PA2] gi|315105505|gb|EFT77481.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL030PA1] gi|327327708|gb|EGE69484.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL103PA1] Length = 246 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 36/236 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 +G + H+ V R++ G+++L+ +G+ G ++R ++ V+ Sbjct: 22 TGAEGHHAGSVRRIRVGESVLVTDGQ-----------GHAVRGPAIEVTKGSVSVETVEI 70 Query: 85 IFSPI------------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDR 126 + +P K++R + + EMG+ I R ++ + R Sbjct: 71 LHTPATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVAR 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLHAIA 185 + A +Q +P + T E + + N Q + SE + ++L A Sbjct: 131 WQAAAREATKQSRRFLVPQVELAQTREVVKRIC--NAQAAYVLHESASEPLVHQELPASG 188 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 V ++GPEGG S+E E + P+++ +LR+ TA V +A ++A+ Sbjct: 189 ---EVIFIVGPEGGITSQEVEAFVA-AGARPVTVSDGVLRTSTAGVVGLAQLRAMA 240 >gi|331082511|ref|ZP_08331636.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400489|gb|EGG80119.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium 6_1_63FAA] Length = 95 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G + + E + I +V I IGPEGG+ E ++LG RILR++TA + Sbjct: 25 GMKKTKEIIGKIKPGQSVGIFIGPEGGFEESEVALAKEKADAQVITLGKRILRTETAGLT 84 Query: 233 AMALV 237 +A++ Sbjct: 85 VLAIL 89 >gi|308183185|ref|YP_003927312.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori PeCan4] gi|308065370|gb|ADO07262.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori PeCan4] Length = 226 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQTLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + +LK + + F ET EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLKAYPKASVLDFKGETLPVSVGFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSEQERGCFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|301794754|emb|CBW37207.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] Length = 247 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+G I ++ + ++++ + AAEQ + Sbjct: 83 KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNVV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199 P I+ L D +I+ A E E L A+ + A L+ GPEGG Sbjct: 143 PSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAALIKAVTGLEKGAKLLFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E + V LGPRILR++TA + A++ + + Sbjct: 203 LSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243 >gi|210135240|ref|YP_002301679.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori P12] gi|210133208|gb|ACJ08199.1| hypothetical protein HPP12_1047 [Helicobacter pylori P12] Length = 226 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 35/244 (14%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 F----KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K+E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGGRKLEVMASKKT-----HLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEK 117 Query: 123 ----NMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + I + EQC L ++P T + +L + + F ET + Sbjct: 118 IDSTKLERFQKILIHSCEQCGRSALMELEVFPNT--KEVLNAYPKASVLDFKGETLPASV 175 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMA 235 EK ++IGPEGG+ E+E + PL + +L+S++A V + Sbjct: 176 GFEK----------GVIIGPEGGFSEPERECFKEREIYRIPLDM---VLKSESACVFMAS 222 Query: 236 LVQA 239 + Q Sbjct: 223 IAQV 226 >gi|257459141|ref|ZP_05624260.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268] gi|257443526|gb|EEV18650.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268] Length = 218 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 19/212 (8%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 DQ+ +L V R + G+ I + N +DG +L +I + K + ++S T D Sbjct: 19 DQFLHL-KVRRARAGERIDVRNLEDGASYLYEIVEISRKGAALNLVFKSSVFTPSHDFCV 77 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILTL 143 ++ +++ ++ + EMG+G + V +Q N + R+ I++++QC ++ Sbjct: 78 AWAVVESAVIEKSLPALNEMGVGRLVLVYADLSQKNVRLDPQRMERILINSSQQCGRNSI 137 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 I + + L + +++ I F G + IA +GPEGG+ Sbjct: 138 MQIEVLSGSDELAQRYENVSLIDFG----GKNIDIFGGDEIA-------FVGPEGGFSPR 186 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E+E + + P ILRS+TA +A A Sbjct: 187 EREKFKNAYALNS----PYILRSNTALIATCA 214 >gi|320533957|ref|ZP_08034521.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133834|gb|EFW26218.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171 str. F0337] Length = 270 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 48/241 (19%), Positives = 96/241 (39%), Gaps = 23/241 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQSRSQTKQ 79 +G + + V R++ + + L +G L +++ G + ++ + Sbjct: 31 TGPEARHAVTVKRLRAQERVDLVDGAGLRLLCEVTGAGVGGAKDCLAVRILERVEEPAPL 90 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133 + + + K R + ++ + E+G G + P V R + + Sbjct: 91 LRLTLVQALAKGGRDEQAVETATEVGAGLVLPWQSERCVSVWQGVKQAKGRQRWQATALQ 150 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGS-ENSLE--KLHAI 184 AA+Q +P + L +W D +V +E ++E +L A Sbjct: 151 AAKQARRARMPEVEEVRDTRRL-ADWVEQTVRDGGVVLVLHEEASTPISTAMESVRLPAP 209 Query: 185 AHIPNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P V A+++GPEGG EE L + +T + LGP ++R+ +A A+A++ G Sbjct: 210 GEAPLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVLAHASGL 268 Query: 244 W 244 W Sbjct: 269 W 269 >gi|215427748|ref|ZP_03425667.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T92] gi|289750971|ref|ZP_06510349.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691558|gb|EFD58987.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 236 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 23/223 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 GD+ + A V R++ G+ ++L +G + G+ +R +V + + V Sbjct: 22 GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K+ R + I+ + E G A R V + R R SAA Q Sbjct: 82 VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190 +P + + L+ Q V + G+ E + E++ A A ++ Sbjct: 142 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +++GPEGG +E L V + LGP +LR+ TAA A Sbjct: 195 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTSTAAAVA 236 >gi|220912725|ref|YP_002488034.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter chlorophenolicus A6] gi|219859603|gb|ACL39945.1| protein of unknown function DUF558 [Arthrobacter chlorophenolicus A6] Length = 257 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 26/237 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + V R+ G+ + + +G G +S R V + + + V+ + Sbjct: 26 GPEARHAVAVKRLAAGEAVDIVDGA-GTRMSGTVAEAAGTRLTVRCGTLVEEARPRVRLV 84 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNM-DRVRTYTISAAEQ 137 + K +R + I+ S E+G+ A+ P I R+ + + ++ +AA+Q Sbjct: 85 LVQALAKGDRDELAIETSTELGIDAVIPWQSERSIVRWKGDRAAKAHGKWQSVVGAAAKQ 144 Query: 138 CDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI---------AHI 187 +P + T + I+ E+++ L A+ Sbjct: 145 ARRAWIPEVRSAVDTAALAAAVETADLAIIL------HEDAVRPLRAVLEGWEGASGTGT 198 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L VT L LG +LRS TA AA+ L I G W Sbjct: 199 REVLLIVGPEGGISPREVTRLCDRGAVTAL-LGHHVLRSSTAGPAAVVLSSDILGRW 254 >gi|269794664|ref|YP_003314119.1| hypothetical protein Sked_13450 [Sanguibacter keddieii DSM 10542] gi|269096849|gb|ACZ21285.1| conserved hypothetical protein TIGR00046 [Sanguibacter keddieii DSM 10542] Length = 257 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 24/237 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84 G + + V R G+ I + +G +++ V + +V + T V Sbjct: 26 GLEGRHAGVVQRRGVGERIDVVDGAGLRLTCRVTAVQAAEVTLEVVESVQESTDGVSVVL 85 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-------VITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K +R + I+ + E G+ A+ P V+ R + V T +A +Q Sbjct: 86 VQALAKGDRDELAIEAATEAGVDAVLPWQAERSVVVWRGDRAAKSRARWVATVR-AATKQ 144 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--------- 188 +LP + + L E +L IA +P Sbjct: 145 ARRASLPGVGEVVDAKGLAARTAQVVASGGVVVVLHEEATLP----IAQVPLPARTGDAV 200 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG S+ + TL + T LGP +LR+ TA A+AL+ G W Sbjct: 201 AEVLVVVGPEGGI-SDRECTLLTEAGATLARLGPHVLRTSTAGPIAVALLSERLGRW 256 >gi|154149486|ref|YP_001406011.1| hypothetical protein CHAB381_0412 [Campylobacter hominis ATCC BAA-381] gi|153805495|gb|ABS52502.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 219 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 18/218 (8%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTK 78 Q K + +Q+ +L R+K G+ I + N KDG ++ +I + K ++ +++ K Sbjct: 13 QLKITNEQFSHL-KARRLKAGERIDVRNLKDGFNYIYEIMEISRKEALCELIFKNSVIEK 71 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137 D ++ ++ ++ + E+G+G + V + ++Q N ++ R+ I++++Q Sbjct: 72 TPDFTVAWAVVENAVIEKTLPSLNEIGIGKVILVYSDFSQKNIKPDLKRMERILINSSQQ 131 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C + LE + N F D+ + + L + + +GPE Sbjct: 132 CG--------RNSILEIEILNSSDELSKKFQDKISLIDFGGKSLEIFGN--DEIAFVGPE 181 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GG+ E++ + + P ILRS+TA ++ A Sbjct: 182 GGFSERERKLFKNSYAIN----SPYILRSNTAILSVCA 215 >gi|188527861|ref|YP_001910548.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Shi470] gi|188144101|gb|ACD48518.1| hypothetical protein HPSH_05545 [Helicobacter pylori Shi470] Length = 226 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 27/239 (11%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGVQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R + I + EQC L ++P T + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFPNT--KEVLNAYPKASVLDFKGETLPASVGFEK 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S++A V ++ Q Sbjct: 180 ----------GVIIGPEGGFSGQERGCFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|224012771|ref|XP_002295038.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969477|gb|EED87818.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 309 Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 28/57 (49%) Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ H P + +GPE G+ EE +LG ILR DTA +A + +V A Sbjct: 229 SVDHTPKAIVAVGPERGWTDEEANIFVDQCGFETATLGSSILRVDTAVIAGLGVVSA 285 >gi|329946944|ref|ZP_08294356.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526755|gb|EGF53768.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170 str. F0386] Length = 270 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 23/241 (9%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR---FKVEYQSRSQTKQSD 81 +G + + V R++ + + L +G L +++ G V R + + Sbjct: 31 TGPEARHAVTVKRLRAEERVDLVDGVGLRLLCEVTGAGVGGAKDCLAVRVLERVEEPEPS 90 Query: 82 VQYIF--SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133 ++ + K R + ++ + E+GMG + P V R + + Sbjct: 91 LRLTLVQALAKGGRDEQAVETATEVGMGLVLPWQAERCVSIWQAAKQAKGRQRWQATALQ 150 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGS-ENSLE--KLHAI 184 AA+Q +P + L+ +W +V +E N++E +L A Sbjct: 151 AAKQARRARVPEVDEARDTRRLV-DWVGQTVRGGGVVLVLHEEAMTPISNAMESVRLPAS 209 Query: 185 AHIPNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V A+++GPEGG EE L + +T + LGP ++R+ +A A+A++ G Sbjct: 210 GEASLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVLAHASGL 268 Query: 244 W 244 W Sbjct: 269 W 269 >gi|33865512|ref|NP_897071.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH 8102] gi|33632681|emb|CAE07493.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 237 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L A +P V ++IGPEGG+ E E ++ P+ LG R+L DTA AA+AL Sbjct: 181 LSATPAVPAV-VMIGPEGGFVPFELELAQAV-IAQPVHLGTRVLSVDTALTAALAL 234 >gi|297794975|ref|XP_002865372.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp. lyrata] gi|297311207|gb|EFH41631.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp. lyrata] Length = 139 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 13/116 (11%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDILTLPFIY 147 +K R D++I+K E+G ++ P++T + N +DR+ + + A QC L + Sbjct: 7 LKGGRADWLIEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAVATQCQRLHQIVLN 66 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENS-----LEKLHAIAHIPNVAILIGPEG 198 PP LL DH +F + C + L +++ A + +++G EG Sbjct: 67 PPIKFVTLL---DH----IFKSKLCLVATAEATPLLNAVNSSAKESSGLLIVGSEG 115 >gi|207091939|ref|ZP_03239726.1| 16S rRNA m3U1498 methyltransferase [Helicobacter pylori HPKX_438_AG0C1] Length = 226 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V+ Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VDAQPLEVIASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEAFSNTKEVLNAYPKASVLDFKGETLPTSVGFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ E+ + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSEPERGYFKEQKIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|152991814|ref|YP_001357535.1| 16S ribosomal RNA methyltransferase RsmE [Sulfurovum sp. NBC37-1] gi|151423675|dbj|BAF71178.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 223 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 24/221 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 GD + YL V R K D I L N D + I+++ K S +E + + K S V Sbjct: 18 GDAHRYLFKVRRQKADDTIYLRNLNDNQLHRYAITHIDKRSATLTLEESTVLEIKASKVL 77 Query: 84 YI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVRTYTISAAEQCDIL 141 ++ + I ++ ++ EMG+ I + + +Q + + R+ +++++Q Sbjct: 78 HVGWCVIDPKNIEKVLPSLNEMGVAKITFIYCKRSQKSFKPDFKRLEKILLNSSQQSGRS 137 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 + + L L + + F SEN+ + A I I+IG EGG+H Sbjct: 138 EMMQLEMAEDLRSFLAENPQSKMLNF------SENNF--ISGAADIE--TIVIGCEGGFH 187 Query: 202 SEEKETLHS---LPFVTPLSLGPRILRSDTA--AVAAMALV 237 +E L F TPL +L+S++A AVA+ AL+ Sbjct: 188 EDEVALFDEEMILGFDTPL-----VLKSESAVCAVASKALL 223 >gi|270263052|ref|ZP_06191322.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13] gi|270042740|gb|EFA15834.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13] Length = 166 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R++ PL + S D +++ VLRM G + LF+G + + ++I V KS Sbjct: 2 RIPRIYHPQPLIDNAEIALSEDAANHVGRVLRMSAGQTLQLFDGSNRVFNAEIVRVDKKS 61 Query: 65 IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 ++ ++ + + R + + S + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VQVQLGAGQLEDRESPLNLHLGQVIS--RGEKMEFTIQKSIELGVNVITPLFS 112 >gi|222152424|ref|YP_002561599.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus uberis 0140J] gi|222113235|emb|CAR40735.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 247 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 11/158 (6%) Query: 90 KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++LD + QK+ E+G AI V+ + +++ + AAEQ + Sbjct: 83 KADKLDLVTQKATELGAHAIWSFPADWSVVKWDGKKLAKKAEKLEKIALGAAEQSKRNLV 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEK-LHAIAHIPNVAILIGPEGG 199 P + L H +I A E G + +L K L ++ + + GPEGG Sbjct: 143 PEVVLFERKVDFLAELSHFDKIFIAYEESAKDGEKAALAKALSSLKKGDKILFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E + + LGPRI+R++TA + A++ V Sbjct: 203 ISPKEIALFEGAGAIK-VGLGPRIMRTETAPLYALSAV 239 >gi|219112567|ref|XP_002178035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410920|gb|EEC50849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 333 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHS-EEKETLHSLPFVTPLSLGPRILRSDTAAV 231 GS ++++ + + +GPEGG+ +E + F +++G R+LRSD A V Sbjct: 260 GSLKKMKQVEFPVKSSRLVVAVGPEGGWEEPDELDRFRDCGFQQ-ITMGARVLRSDCAVV 318 Query: 232 AAMALVQAICGD 243 + ++L IC D Sbjct: 319 SLLSLAHDICAD 330 >gi|217032602|ref|ZP_03438091.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128] gi|298735918|ref|YP_003728443.1| ribosomal RNA small subunit methyltransferase E [Helicobacter pylori B8] gi|216945738|gb|EEC24363.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128] gi|298355107|emb|CBI65979.1| ribosomal RNA small subunit methyltransferase E [Helicobacter pylori B8] Length = 226 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 25/238 (10%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KD + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSLLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGGRPLEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R + I++ EQC L + P T E +L + + F ET + EK Sbjct: 122 KLERFQKILINSCEQCGRSVLMELEAFPNTKE-MLNAYPKASVLDFKGETLPASADFEK- 179 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 ---------GVIIGPEGGFSEQEREQFKEREIYRIPLDM---VLKSESACVFVASIAQ 225 >gi|322378683|ref|ZP_08053116.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1] gi|321148900|gb|EFX43367.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1] Length = 222 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%) Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----NMDRVRTYTISAAEQCDI 140 I++ I + ++ ++ +MG+G I ++Q ++R R I++ EQC Sbjct: 80 IWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEKIDAPKLERFRRILIASCEQCGR 139 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 T + + L+ + F D+T G SLE I IGPEGG+ Sbjct: 140 STCMELEVLENTKMALERYPTAYIFDFHDQTQGL-VSLEN----------GIFIGPEGGF 188 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 S+E++ +P P IL S+ AA+ Sbjct: 189 CSQERQLFKDREIYSP---SPIILTSEGAAL 216 >gi|324998265|ref|ZP_08119377.1| hypothetical protein PseP1_05833 [Pseudonocardia sp. P1] Length = 139 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 15/105 (14%) Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAILIGPEGG 199 + P TT + + D + +V E+ G+ +A +P V + +GPEGG Sbjct: 43 WATPSTTRQLARRVADADVALVL-HESAGT--------GLADVPLPDAGEVLLAVGPEGG 93 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E L V P+ +GP +LR+ TAA A+ + G W Sbjct: 94 VDDHELALLADAGAV-PVRMGPEVLRASTAACVALGALAVRTGRW 137 >gi|317009689|gb|ADU80269.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori India7] Length = 226 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I++ EQC L + + + +L + + F ET + EK Sbjct: 122 KLERFQKILINSCEQCGRSALMELEAFSNTKEMLNAYPKASVLDFKGETLPTSVGFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ E+ + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225 >gi|224002613|ref|XP_002290978.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana CCMP1335] gi|220972754|gb|EED91085.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana CCMP1335] Length = 147 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + +GPEGG+ + + + ++LG R+LRSD A V+ +AL +C Sbjct: 92 VAVGPEGGWEEPFELDMFTNKGFKKITLGTRVLRSDVAVVSLLALAHEVCA 142 >gi|154509292|ref|ZP_02044934.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC 17982] gi|153798926|gb|EDN81346.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC 17982] Length = 262 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +A+++GPEGG +EE L + LG +LRS TA A+ L++A G Sbjct: 208 RIALIVGPEGGIGAEETAQLVD-AGARAIGLGDNVLRSSTAGAVALTLIRAAAG 260 >gi|255327128|ref|ZP_05368203.1| ribosomal RNA small subunit methyltransferase E [Rothia mucilaginosa ATCC 25296] gi|255295746|gb|EET75088.1| ribosomal RNA small subunit methyltransferase E [Rothia mucilaginosa ATCC 25296] Length = 259 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 20/230 (8%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 A V R++ G+ I L +G L ++ + + + R + + + + K Sbjct: 32 ALVKRLELGERIDLGDGTGRRALGTVASINADGVSVLVQELREERSVPSIYLVQALAKDG 91 Query: 93 RLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 R I+ + E+G+ A R ++ + + + +AA+Q +P + Sbjct: 92 RDLLAIETATELGVYGVLPWSADRSIVRWKGERASKAHTKWQNTVTAAAKQSRRALIPEV 151 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGS----ENSLEKLHAIA-------HIPN-VAILI 194 Y + L++ + V ++++ E + E+L A+A ++P + +L+ Sbjct: 152 YDLYSTADLVELIEEVAGEV-SEQSAAVFILHEQATERLSALARKLVEAENLPEEIYLLV 210 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG E + L LG +LRS TA AAM + + G W Sbjct: 211 GPEGGISDREVQLFTDAGAQLAL-LGDEVLRSSTAGSAAMCTLNVVLGRW 259 >gi|239631385|ref|ZP_04674416.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525850|gb|EEQ64851.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 246 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 10/155 (6%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135 V+ + K ++ ++++QK+ E+G I ++ + + R++ +AA Sbjct: 76 VEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERVVKKIARLQEIAKNAA 135 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194 EQ +P + L + + + ++V +E+ + A++ P ++ + Sbjct: 136 EQSHRNQVPDVTMYAKLNQVGQTAE--AKLVAYEESAKQGEHGVLISALSPRPASLCVFF 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 GPEGG EE L F+ LGPRILR++TA Sbjct: 194 GPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETA 227 >gi|237840771|ref|XP_002369683.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|211967347|gb|EEB02543.1| hypothetical protein, conserved [Toxoplasma gondii ME49] Length = 232 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ +E E L SLG R+LR +TA V+ +A Sbjct: 149 RVLVAIGPEGGWIDQEVEELRETQGFEFFSLGDRVLRCETAVVSVIA 195 >gi|221503309|gb|EEE29007.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 232 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ +E E L SLG R+LR +TA V+ +A Sbjct: 149 RVLVAIGPEGGWIDQEVEELRETQGFEFFSLGDRVLRCETAVVSVIA 195 >gi|221482899|gb|EEE21230.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 232 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ +E E L SLG R+LR +TA V+ +A Sbjct: 149 RVLVAIGPEGGWIDQEVEELRETQGFEFFSLGDRVLRCETAVVSVIA 195 >gi|84997543|ref|XP_953493.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304489|emb|CAI76868.1| hypothetical protein, conserved [Theileria annulata] Length = 236 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Query: 146 IYPPTTLEFLLKNWDHNC-QIVFADETCG---SENSLEKLHAIAHIPN-VAILIGPEGGY 200 + P T+ L +++ C Q +A + SE +L L+ H+ + + IGPEGG+ Sbjct: 123 LMPEVTMFISLGDYERACKQKDYAMKLIAHPDSEQTLGSLNLNTHVKGPILVAIGPEGGW 182 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E L FV L RILR++ AAVA ++ + + D Sbjct: 183 LDHELAYYKKLGFVQ-FKLTDRILRTEVAAVAILSQMSLLLND 224 >gi|15639268|ref|NP_218717.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025510|ref|YP_001933282.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum SS14] gi|3322550|gb|AAC65264.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018085|gb|ACD70703.1| hypothetical protein TPASS_0276 [Treponema pallidum subsp. pallidum SS14] gi|291059678|gb|ADD72413.1| RNA methyltransferase superfamily [Treponema pallidum subsp. pallidum str. Chicago] Length = 294 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 37/246 (15%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-----RSQTKQ 79 SG +HY+ V R + GD L ++ + +S + R + + + +T+ Sbjct: 34 SGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTRSLILHCTPMPPVDEKTQV 93 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNT-HYNMDRV----RT 129 + V + P + D +++ + E+G I P+ + R ++T H + R+ R Sbjct: 94 TLVLLQWMP-RARVFDAIVRHATELGTARIIPIRGERSLIRDEKDTQHARLQRIVREARQ 152 Query: 130 YTISAAE-----------QCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGS 174 + SA +L F YP E + H C + Sbjct: 153 QSGSAVNTRVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVGGSFHELLWTGRSTHCTA 212 Query: 175 ENSLEKLHAIAHIPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + +A + P+V + +G EGG+ E+ TLH F PL +LR +TA Sbjct: 213 HRTPTEPNAPHNTPDVRAQAVILAVGAEGGFSDTEERTLHDAHFA-PLHFRTNVLRVETA 271 Query: 230 AVAAMA 235 A+ A+A Sbjct: 272 ALYALA 277 >gi|145628643|ref|ZP_01784443.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae 22.1-21] gi|144979113|gb|EDJ88799.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae 22.1-21] Length = 99 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIG EGG ++E F T + LG R+LR++TA++AA++ +Q GD Sbjct: 43 GVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQICFGD 96 >gi|330501467|ref|YP_004378336.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] gi|328915753|gb|AEB56584.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] Length = 236 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 27/46 (58%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E E L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWTPYEVELLREAAGLQPVQLGERILRVETAVPALLA 233 >gi|297569051|ref|YP_003690395.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] gi|296924966|gb|ADH85776.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] Length = 264 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + IGPEGG+ E F TP S GPRILR DTA +AL +A+ Sbjct: 217 LAIGPEGGWVDFEINCFAKQGF-TPFSWGPRILRVDTAVPVLLALAEAL 264 >gi|300933260|ref|ZP_07148516.1| hypothetical protein CresD4_04275 [Corynebacterium resistens DSM 45100] Length = 251 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 23/224 (10%) Query: 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 A V R+K+G+ +++ +G D + V + + +V T + V + + K+ Sbjct: 34 ADVKRLKDGEALVITDGSD----QAVRAVWRGPQVEVTEVLAIATPRPFVTVVQAIPKSE 89 Query: 93 RLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 R + + V+ G I P I +++ + SAA+Q L +P + Sbjct: 90 RAELAVDLMVQAGADRIIPWESARTIAKWSGKEEKARAKWENAARSAAKQARRLRIPEVT 149 Query: 148 PP----TTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 P + + LL K ++ T G ++ + V ++IGPEGG Sbjct: 150 SPARSVSQIASLLGDAKGLQRQVLVLHESATAGLKSR------DFNCDEVVLVIGPEGGV 203 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE L L + LGP +LR+ +AA A+ + A+ W Sbjct: 204 SPEEIAQLAELGG-EAVVLGPEVLRTASAAAVALGAIGALSTRW 246 >gi|269956977|ref|YP_003326766.1| hypothetical protein Xcel_2190 [Xylanimonas cellulosilytica DSM 15894] gi|269305658|gb|ACZ31208.1| protein of unknown function DUF558 [Xylanimonas cellulosilytica DSM 15894] Length = 256 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 20/235 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKSIRFKVEYQSRSQTKQSDVQ 83 G + + A V R + G+ + + +G G L ++ G +R VE + Sbjct: 25 GGEGRHAAVVQRKRIGERVDVVDGG-GTRLRCVVVAAEGAQVRLGVEEVVTEPAPDVALT 83 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-------VITRYTQNTHYNMDRVRTYTISAAE 136 + + K +R + ++ +VE G A+ P V+ R + V T +A + Sbjct: 84 LVQALAKGDRDELAVEAAVETGADAVLPWQAERSVVVWRGDRAARSRARWVATVR-AAVK 142 Query: 137 QCDILTLPFIYPP-TTLEFLLKNWD----HNCQIVFADE--TCGSENSLEKLHAIAHIPN 189 Q +P + TT + + D +V +E T + L A A+ P Sbjct: 143 QARRAWVPDVGDAVTTPQLAARVRDVVAAGGVALVLHEEATTPVAAAPLPTPDA-ANPPE 201 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG E L + + LGP +LR+ TA A+AL+ G W Sbjct: 202 LLVVVGPEGGIGDAELTRLTDAGALA-VRLGPHVLRTSTAGPVAVALLAQRLGRW 255 >gi|157164135|ref|YP_001466041.1| hypothetical protein CCC13826_1151 [Campylobacter concisus 13826] gi|112801233|gb|EAT98577.1| conserved hypothetical protein [Campylobacter concisus 13826] Length = 218 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 16/134 (11%) Query: 103 EMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 E+G+G I V T+++Q N +++++ + EQC +L L+ L+ + + Sbjct: 96 ELGVGKIAFVYTKFSQANFKIDLEKLNYINALSCEQCGRTSLMEFEIYKNLDELMNVYKN 155 Query: 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 I F G +N EK + ++IGPEGG+ +E ++ + Sbjct: 156 VSAINF-----GGKNLNEKR------DDEILIIGPEGGFSEDETAKFKNIYGLNT----K 200 Query: 222 RILRSDTAAVAAMA 235 ILRS TA ++ A Sbjct: 201 NILRSQTAVISVAA 214 >gi|54023394|ref|YP_117636.1| 16S ribosomal RNA methyltransferase RsmE [Nocardia farcinica IFM 10152] gi|54014902|dbj|BAD56272.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 246 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 20/216 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT----KQSD 81 G + + A V R + G+ I L DG L S V + R ++E + +T + Sbjct: 22 GPEGRHAATVRRTRVGEPITL---SDGRGLLAASEVVAAQRDRLELRVLERTVAPRPAPE 78 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136 V + + K++R + + E G AI P + + +++ R+ SAA Sbjct: 79 VTVVQALPKSDRSELAVDLMTEAGADAIVPWQAARCVANWEGKAAKGVEKWRSAARSAAR 138 Query: 137 QCDILTLPFIY----PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 Q +P + LE L++ +V A G+ E + A V + Sbjct: 139 QSRRAYIPEVADLHRTRDVLE-LVRGARAEGAVVAALHESGTAKFTE--LSFAGASRVVL 195 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 ++GPEGG E L + L LGP +LR+ T Sbjct: 196 IVGPEGGLDDGELVALAAAGAQVTL-LGPTVLRTST 230 >gi|24380387|ref|NP_722342.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus mutans UA159] gi|24378409|gb|AAN59648.1|AE015027_6 conserved hypothetical protein [Streptococcus mutans UA159] Length = 247 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 15/221 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ +V+R+ E D ++L + L++++ V + F++ S + VQ + Sbjct: 20 DTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHT-FEI-VDELSDNVELPVQVVI 77 Query: 87 SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 + K ++L+++ QK+ E+G A+ V+ ++ D++ AAEQ Sbjct: 78 ASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKKLLKKADKLTKIAQGAAEQS 137 Query: 139 DILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILI 194 +P + + +FL + N V +E+ G +L + L ++ + + Sbjct: 138 KRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESAALARELAQLSADQQILFIF 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEGG E V + LGPRI+R++TA + A++ Sbjct: 198 GPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALS 237 >gi|260578252|ref|ZP_05846168.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258603554|gb|EEW16815.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 270 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 10/79 (12%) Query: 166 VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 V D+ GSE A +A+++GPEGG EE L TP+ LGP +LR Sbjct: 201 VNGDDANGSE---------AAATEIALVVGPEGGISPEELAEFEQL-GATPVRLGPEVLR 250 Query: 226 SDTAAVAAMALVQAICGDW 244 + TAA A+ + A+ W Sbjct: 251 TATAAAVALGAIGAVTDRW 269 >gi|162447807|ref|YP_001620939.1| hypothetical protein ACL_0953 [Acholeplasma laidlawii PG-8A] gi|161985914|gb|ABX81563.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A] Length = 227 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 29/235 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D + K D H++ +V+R K G ++ G G +L+ + K + Sbjct: 1 MQRYFLDH------KNKIDKDDVHHILNVMRFKSG-TVVEVCGISGCYLATLEIQHKEVG 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHY 122 F + + +V + K +++D + + + +I V + + N + Sbjct: 54 F-LTTEKLDDNPPLNVTIVQGLPKGDKMDTVTKYATLFQAKSIIFVAMKRSIAKLSNVDH 112 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R+ AAE TLP I L+ + N D Q+V DE LE+++ Sbjct: 113 KLSRLNKIAKEAAELSKRSTLPHIQLLENLKDI--NTDGK-QLVLLDE-------LERVY 162 Query: 183 AIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 I ++ +++GPEGG E+ L +T +SLG IL ++ A + Sbjct: 163 NIKDFIKDHGNKDLIVIVGPEGGIDETERNALVERGAIT-VSLGQSILPTELAHI 216 >gi|302560714|ref|ZP_07313056.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302478332|gb|EFL41425.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 246 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 26/234 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVGKSIRFKVEYQSRSQTKQS--DV 82 G + + V R++ G+ ++L +G G W ++ R V + + + Sbjct: 23 GPEGRHAVAVKRLRAGEAVVLTDGA-GRWAEGEVDGTEGKDRLIVRLGHVVEEPEEFPRL 81 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136 + + K +R + ++ E+G+ I P IT++ + ++ + R A + Sbjct: 82 TVVQALPKGDRGEVAVETMTEVGVDVIVPWSASRCITQWKGERGLKSLAKWRATAREAGK 141 Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NV 190 Q + P + T + LL D + E+ +E L A A +P +V Sbjct: 142 QSRRVRFPRVADAATTKQVASLLAEADFAAVL--------HESGVEPL-ATAGLPASGDV 192 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE LG +LR+ TA AA AL+ G W Sbjct: 193 VLVVGPEGGVSPEELAAFEGA-GARVCRLGRSVLRTSTAGTAAGALLLGRTGRW 245 >gi|153005814|ref|YP_001380139.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. Fw109-5] gi|152029387|gb|ABS27155.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5] Length = 251 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 179 EKLHAIAHIPNVAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L A+A A L IGPEGG+ E L + F TP SLGPR+LR D A A+ V Sbjct: 178 DPLEALAPGAERACLAIGPEGGWTPYEAAALCARGF-TPFSLGPRVLRVDAAVPYAVGQV 236 Query: 238 Q 238 + Sbjct: 237 E 237 >gi|297160570|gb|ADI10282.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 24/233 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSD-VQ 83 G + + V R++ G+ ++L +G ++ V R VE + R + S + Sbjct: 24 GPEGRHAVSVRRLRVGEPVVLTDGAGTGAFGAVAAVEGKDRLLVEVAEVRHEAPPSPRIT 83 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAEQ 137 + + K +R + ++ E G+ AI P +T++ + + R A +Q Sbjct: 84 VVQALPKGDRGELAVETMTETGVDAIVPWAAARCVTQWKGERGLKALGKWRATAREAGKQ 143 Query: 138 CDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVA 191 L P + T + LL D + E E L A A +P +V Sbjct: 144 SRRLLFPEVMDAMTTRQVARLLAESDFAAVL--------HEEGAEPL-ATAPLPAEGSVV 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE P LGP +LR+ TA AA AL+ G W Sbjct: 195 LVVGPEGGVSPEELAAFAEA-GARPYRLGPTVLRTSTAGTAAAALLLGRTGRW 246 >gi|182412505|ref|YP_001817571.1| hypothetical protein Oter_0682 [Opitutus terrae PB90-1] gi|177839719|gb|ACB73971.1| protein of unknown function DUF558 [Opitutus terrae PB90-1] Length = 247 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Query: 188 PNVAILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 P V + IG E G+ + E+ L H F LG R+LR++TA +AA+ LV+A G Sbjct: 192 PRVTLAIGAERGWSTPERALLRHHGFTFA---HLGERVLRTETACIAAITLVRAALG 245 >gi|302518999|ref|ZP_07271341.1| involving differentiation [Streptomyces sp. SPB78] gi|302427894|gb|EFK99709.1| involving differentiation [Streptomyces sp. SPB78] Length = 141 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG EE + + LGP +LR+ TA AA+AL+ G W Sbjct: 86 DIVLVVGPEGGVAPEEIASFTAA-GAHVCRLGPSVLRTSTAGTAAIALLSGRTGRW 140 >gi|149917598|ref|ZP_01906095.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1] gi|149821661|gb|EDM81059.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1] Length = 243 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 A + + +++GPEGG+ E+E +L + LGPRI+R +TAAVA +A Sbjct: 185 AQVGPLTLVLGPEGGFVEFERERFAALGDAL-VHLGPRIMRVETAAVALLA 234 >gi|19553487|ref|NP_601489.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum ATCC 13032] gi|62391130|ref|YP_226532.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum ATCC 13032] gi|21325060|dbj|BAB99682.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032] gi|41326469|emb|CAF20631.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 241 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 15/228 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDV 82 +G + + V R++ G+ I L +G+ ++ + R V+ V Sbjct: 21 AGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDRLNAVVDLVEEIPAPNPQV 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + I + G I + ++ ++ + + +AA+Q Sbjct: 81 TIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAKSLAKWQVAAEAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 T+P I E + K D + I+ +E + LE NV ++IGP Sbjct: 141 SRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE------FSGNVVVIIGP 194 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG E T + LGP +LR+ +A + A+A + + W Sbjct: 195 EGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLSDRW 241 >gi|261838413|gb|ACX98179.1| hypothetical protein KHP_0982 [Helicobacter pylori 51] Length = 226 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66 FV PL + K G+ Y +L R+K + L N KDG ++I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGAQALEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQERGYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225 >gi|290581320|ref|YP_003485712.1| hypothetical protein SmuNN2025_1794 [Streptococcus mutans NN2025] gi|254998219|dbj|BAH88820.1| hypothetical protein [Streptococcus mutans NN2025] Length = 247 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 15/221 (6%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 D ++ +V+R+ E D ++L + L++++ V + F++ S + VQ + Sbjct: 20 DTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHT-FEI-VDELSDNVELPVQVVI 77 Query: 87 SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 + K ++L+++ QK+ E+G A+ V+ ++ D++ AAEQ Sbjct: 78 ASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKKLLKKADKLTKIAQGAAEQS 137 Query: 139 DILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILI 194 +P + + +FL + N V +E+ G +L + L ++ + + Sbjct: 138 KRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESAALARELAQLSAGQQILFIF 197 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 GPEGG E V + LGPRI+R++TA + A++ Sbjct: 198 GPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALS 237 >gi|51598323|ref|YP_072511.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi] gi|51572894|gb|AAU06919.1| hypothetical protein BG0061 [Borrelia garinii PBi] Length = 238 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 29/153 (18%) Query: 100 KSVEMGMGAIRPVITR--------------------YTQNTHYNMDRVRT-----YTISA 134 K + + +G IRP++ R TQ ++ N + + I+ Sbjct: 73 KKLNVLIGMIRPLVARRIIKELASIGIYEIIFFNTELTQKSYLNSKIFKNNDYEKHLIAG 132 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 A Q LP I L+ LK + Q F + ++S +KL I I N I++ Sbjct: 133 AMQGGTTYLPKIKIMKNLKESLKYIE---QENFEIKILLEKDSKKKLIDIEQINNATIIV 189 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 GPE G+ +EK+ + F +P S+ ILR++ Sbjct: 190 GPERGFTEKEKQLITQYNF-SPCSISSNILRTE 221 >gi|307700645|ref|ZP_07637673.1| RNA methyltransferase [Mobiluncus mulieris FB024-16] gi|307614175|gb|EFN93416.1| RNA methyltransferase [Mobiluncus mulieris FB024-16] Length = 342 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E ++ L LG +LR TA A+A++QA G W Sbjct: 288 EIAVVVGPEGGITEGELAGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 342 >gi|160901594|ref|YP_001567175.1| hypothetical protein Pmob_0103 [Petrotoga mobilis SJ95] gi|160359238|gb|ABX30852.1| protein of unknown function DUF558 [Petrotoga mobilis SJ95] Length = 232 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 173 GSENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G+ ++L K L + + +++GPE G+ EK+ + F T ++LG I R +T+A+ Sbjct: 159 GTNDNLGKVLKELKGAQKINLVVGPEYGFSKREKDFFSTNEFKT-VNLGKSIFRFETSAI 217 Query: 232 AAMALVQ 238 AM+++ Sbjct: 218 YAMSIIN 224 >gi|262373735|ref|ZP_06067013.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311488|gb|EEY92574.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 236 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 17/212 (8%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 Q +L L++K GD L +DG+ +L+++ + Q+ S + V I Sbjct: 24 QIKHLNQHLQLKAGDT-LKVGVRDGQRYLTEVQSITAQQIMLRPIQTESVPNKVPVHLIL 82 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTL 143 + + L MI +V +G+ I + + +++ + ++ Y EQ + Sbjct: 83 ALPRPKVLRRMIMDAVTLGVERISLIHSYRVDKSYWQSPFLQQLDDYVTLGLEQAGDTIV 142 Query: 144 PFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P I + P + L A +E S+ HAIAH N +++GPEG Sbjct: 143 PEIQLYKRFKPFVEDVLPTLISEQRPAYVAHPY--AEQSMP--HAIAHGCN--LIVGPEG 196 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 G+ E E L +SLG RILR++TA Sbjct: 197 GFIPYEIELLKK-NGCQAMSLGNRILRTETAV 227 >gi|304310394|ref|YP_003809992.1| hypothetical protein HDN1F_07500 [gamma proteobacterium HdN1] gi|301796127|emb|CBL44333.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 243 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%) Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 IGPEGG+ E E L + F + LSLGPRILR +TA Sbjct: 199 IGPEGGFIPYEIEKLQAAGFRS-LSLGPRILRVETA 233 >gi|254456868|ref|ZP_05070296.1| conserved hypothetical protein TIGR00046 [Campylobacterales bacterium GD 1] gi|207085660|gb|EDZ62944.1| conserved hypothetical protein TIGR00046 [Campylobacterales bacterium GD 1] Length = 227 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 28/217 (12%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ---SRSQTKQSDV 82 G+ + YL + R GD + N D + L K V R VE + S+ + QSD Sbjct: 22 GELHKYLVKIRRHSVGDELNFRNRDDIKTLHKYRVVQVESR-AVELELISSKEEITQSDK 80 Query: 83 QY--IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAEQCD 139 Q + I ++ ++ E+G+ I + +QN + R ++ +QC Sbjct: 81 QLHIAWCVIDAKSIEKVLPSLNEIGVEKISFIYCDRSQNNIKLDFKRFERILEASMQQCG 140 Query: 140 ILT-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 + + F + EF+ + D F D S+ E+ +L+G EG Sbjct: 141 RSSYMEFDTYKSIKEFITEFEDVKV-FDFCDNILDSDADFER-----------VLVGCEG 188 Query: 199 GYHSEEKETL---HSLPFVTPLSLGPRILRSDTAAVA 232 G+ E+E L + TP+ +LRS++AAVA Sbjct: 189 GFSQVERELLSKKENFRLDTPM-----VLRSESAAVA 220 >gi|325963346|ref|YP_004241252.1| hypothetical protein Asphe3_19630 [Arthrobacter phenanthrenivorans Sphe3] gi|323469433|gb|ADX73118.1| conserved hypothetical protein TIGR00046 [Arthrobacter phenanthrenivorans Sphe3] Length = 244 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 26/237 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + V R+ G+ + + +G ++ S +VE ++ +Q + + Sbjct: 11 GQEARHAVTVKRLAPGEPVDIVDGAGTRMRGRVVAASAS-GLEVECETLVFEEQPGTRLV 69 Query: 86 F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNM-DRVRTYTISAAEQ 137 + K +R + I+ + E+G+ A+ P I R+ + + ++ +AA+Q Sbjct: 70 LVQALAKGDRDELAIETATELGIDAVIPWQSERSIVRWKGDRAAKAHAKWQSVVTAAAKQ 129 Query: 138 CDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--------AHIP 188 +P + T ++ E+++ L A+ A P Sbjct: 130 ARRAWVPEVRAAVDTAALAGAVEAAELAVIL------HEDAVRPLRAVLEAWQGADASGP 183 Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L VT L LG +LRS TA AA+ L + G W Sbjct: 184 AEVLLIVGPEGGISPREVTRLCGKGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 239 >gi|95928431|ref|ZP_01311179.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] gi|95135702|gb|EAT17353.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] Length = 237 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 125 DRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +R+R + + EQC LP + YP L K + + V + G + + H Sbjct: 125 ERIREFLVEGLEQCCDTVLPQVDCYP------LFKPYAED---VLPGQLVGKQGVVAHPH 175 Query: 183 AIA-HIPNVA----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 A H V+ + IGPEGG+ E L V PL LG RIL+ + A +A+A Sbjct: 176 VEAPHTAPVSDRYVLAIGPEGGFIPYEVNLLLDQGMV-PLVLGSRILKVEAAMTSAVA 232 >gi|145296244|ref|YP_001139065.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum R] gi|140846164|dbj|BAF55163.1| hypothetical protein [Corynebacterium glutamicum R] Length = 241 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 15/228 (6%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS-IRFKVEYQSRSQTKQSDV 82 +G + + V R++ G+ I L +G+ ++ + GK + V+ V Sbjct: 21 AGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDHLNAVVDLVEEIPAPNPQV 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + + K+ R + I + G I + ++ ++ + + +AA+Q Sbjct: 81 TIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAKSLAKWQVAAEAAAKQ 140 Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 T+P I E + K D + I+ +E + LE NV ++IGP Sbjct: 141 SRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE------FSGNVVVIIGP 194 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG E T + LGP +LR+ +A + A+A + + W Sbjct: 195 EGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLSDRW 241 >gi|15645002|ref|NP_207172.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori 26695] gi|6226368|sp|O25138|RSME_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|2313478|gb|AAD07443.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 226 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 37/244 (15%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59 FV PL + K G+ Y +L R+K + L N KDG E K + Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 VG + +E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARL---LEVMASKKT-----HLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQR 114 Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++R + I + EQC L + + + LK + + F ET + Sbjct: 115 NEKIDIAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPAS 174 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234 EK ++IGPEGG+ E+ + PL + +L+S++A V Sbjct: 175 ADFEK----------GVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVA 221 Query: 235 ALVQ 238 ++ Q Sbjct: 222 SIAQ 225 >gi|255086017|ref|XP_002508975.1| predicted protein [Micromonas sp. RCC299] gi|226524253|gb|ACO70233.1| predicted protein [Micromonas sp. RCC299] Length = 207 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 DV +K R D++++K E+G ++ P++T + + + + +AA + + Sbjct: 30 DVAVACGSLKGGRADWLVEKCSELGASSLVPLLTERSGSVGGSSEGRWERVAAAAMKQSL 89 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENSLEKLHAIAHI--------- 187 + P L C++V A L ++ ++A Sbjct: 90 RNHRLVVHPALTTTQL------CEMVRRAPVALLCAAGAPPLREVMSMAESRTGDGVEAG 143 Query: 188 ---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +++GPEG + EE ETL + P+ LGP LR +TAAVA ++ V Sbjct: 144 YSEGGGVLIVGPEGDFTPEEVETLVAA-GARPVGLGPLRLRVETAAVAIISCVS 196 >gi|293189695|ref|ZP_06608412.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus F0309] gi|292821433|gb|EFF80375.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus F0309] Length = 262 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 20/245 (8%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74 L + G + + A V R+ G+ + + +G ++S K S+ V R Sbjct: 18 LSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEVSGSDKASLSLVVRELVR 77 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVR 128 +V + + K R + ++ E+G+ + R ++ + Sbjct: 78 EDAPSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRAIVQWKGPKAEKGRAKWE 137 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----------CQIVFADETCGSENSL 178 +AA+Q +P + L +W + C D + + Sbjct: 138 GVARAAAKQSRRAFVPVVEDVKDSREL-ASWVASLIGEAGVAFVCHEEAMDSLGAALARV 196 Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ A +P+ +A+++GPEGG ++E L + LG +LRS TA A+ L+ Sbjct: 197 QESRADGTLPSRIALIVGPEGGIGADETAQLVD-AGARAIGLGDNVLRSSTAGAVALTLI 255 Query: 238 QAICG 242 +A G Sbjct: 256 RAAAG 260 >gi|322380178|ref|ZP_08054413.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5] gi|321147393|gb|EFX42058.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5] Length = 222 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 18/151 (11%) Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----NMDRVRTYTISAAEQCDI 140 I++ I + ++ ++ +MG+G I ++Q ++R R I++ EQC Sbjct: 80 IWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEKIDAPKLERFRRILIASCEQCGR 139 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 T + + L+ + F D+T G SLE I IGPEGG+ Sbjct: 140 STCMELEVLENTKMALERYPTAYIFDFHDQTQGL-VSLEN----------GIFIGPEGGF 188 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 ++E++ +P P IL S+ AA+ Sbjct: 189 CNQERQLFKDREIYSP---SPIILTSEGAAL 216 >gi|213965759|ref|ZP_03393951.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium amycolatum SK46] gi|213951518|gb|EEB62908.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium amycolatum SK46] Length = 259 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 21/216 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84 G + +++ V R+K G ILL NG D +++ +V + + +V + V Sbjct: 24 GSEAKHIS-VRRLKAGTEILLANGADKVVRAQLMHVDSREVHVRVIAAEERPRPRPHVTV 82 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTIS--AAEQ 137 + + K++R + + E G+ I P + R+ R + + + AA+Q Sbjct: 83 VQALPKSDRAELAVDLMTEAGVDEIIPWAAVNCVARWQGTAKVTKARAKWQSAAREAAKQ 142 Query: 138 CDILTLPFI---YPPTTLEFLLKNWDHN---CQIVFADETCGSENSLEKLHA-IAHIPNV 190 +P + + +E L++ ++ +ET KL A A+ V Sbjct: 143 ARRAWIPPVADLHSSADIEQLIRETTSAGGVAAVLHEEETA----PFVKLAAQAANADKV 198 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 ++GPEGG E E + + + LGP +LRS Sbjct: 199 LFIVGPEGGVSPGELEAFRAA-GASSVVLGPTVLRS 233 >gi|320538483|ref|ZP_08038346.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] gi|320144654|gb|EFW36407.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] Length = 249 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 IG E G+ EE+E + F T + +G RILR++TA AA A + + W Sbjct: 197 IGSERGWTEEERELFYEQNF-TAVGMGARILRTETAVCAACAAILSKTTVW 246 >gi|317011277|gb|ADU85024.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori SouthAfrica7] Length = 226 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 31/242 (12%) Query: 11 FVDFPLCIKTQGKASGDQYHYL--------AHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 FV PL + K G+ Y +L A VL ++ ++ L+ + E K + + Sbjct: 3 FVYHPLAKEPTLKIEGESYTHLYRSRRIKIASVLDLRNLNDNFLYTYEHVEITKKHALLR 62 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH- 121 + ++E + +T I S I+ ++ M+ ++G+ + ++Q Sbjct: 63 LVGQRELEVMTSKKT-----HLILSVIEIKSIEKMLPFLNQLGVNKLSLFYADFSQRNEK 117 Query: 122 ---YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + I++ EQC L + + + +LK + + F +T + + Sbjct: 118 IDSAKLERFQKILINSCEQCGRSALMELEVFSNTKEMLKAYPKASVLDFNGKTLQTNFNA 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALV 237 EK ++IGPEGG+ E+E + PL + +L+S++A V ++ Sbjct: 178 EK----------GVIIGPEGGFSEPEREQFREREIYRIPLDM---VLKSESACVFVASIA 224 Query: 238 QA 239 Q Sbjct: 225 QV 226 >gi|68535674|ref|YP_250379.1| hypothetical protein jk0602 [Corynebacterium jeikeium K411] gi|68263273|emb|CAI36761.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 259 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG EE L TP+ LGP +LR+ TAA A+ + A+ W Sbjct: 204 EIALVVGPEGGISPEELAEFEQL-GATPVRLGPEVLRTATAAAVALGAIGAVTDRW 258 >gi|156082025|ref|XP_001608505.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148801076|gb|EDL42481.1| hypothetical protein, conserved [Plasmodium vivax] Length = 578 Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 21/151 (13%) Query: 2 KIHSHLKRLFVDFPLCIKTQGK--------ASGDQYHYLAHVLRMKEGDNILLFNGKDGE 53 K +++L+RLF+ P C+ +G +SG+ + L + EG+N L+ +GK GE Sbjct: 349 KANANLRRLFLTIPRCVNDEGDVQVGEKVPSSGEGENNLVRSGKWGEGENNLVRSGKRGE 408 Query: 54 WLSKISYVGK-------SIRFKV----EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV 102 + + GK S+R + E S K D FS + T L+ + Sbjct: 409 GENNLVRSGKWGEGENNSVRSEKGGEGENNSVRSEKGGDATSHFSTLGTQELNALFPNDG 468 Query: 103 EMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 ++ + P + R + MD ++ +++S Sbjct: 469 KVQKRSDYPAMGRKIK--FVCMDFLKLHSVS 497 >gi|332673881|gb|AEE70698.1| RsmE family RNA methyltransferase [Helicobacter pylori 83] Length = 226 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 23/238 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66 FV PL + K G+ Y +L +K + L N KDG + +I+ +R Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRHIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 L-VGTQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPTSVDFEK-- 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + PL + +L+S++A V ++ Q Sbjct: 180 --------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQV 226 >gi|254779634|ref|YP_003057740.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori B38] gi|254001546|emb|CAX29564.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 226 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 39/245 (15%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59 FV PL + K G+ Y +L R+K + L N KDG E K + Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 VG + +E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARL---LEVMASKKT-----HLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQR 114 Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGS 174 ++R + I + EQC L + P T E LK + + F ET + Sbjct: 115 NEKIDSAKLERFQKILIHSCEQCGRSALMELEAFPNTKE-ALKAYPKASVLDFKGETLPT 173 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAA 233 EK ++IGPEGG+ +E+ + PL + +L+S++A V Sbjct: 174 SMDFEK----------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFV 220 Query: 234 MALVQ 238 ++ Q Sbjct: 221 ASIAQ 225 >gi|299473302|emb|CBN77701.1| conserved unknown protein [Ectocarpus siliculosus] Length = 450 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Query: 189 NVAILIGPEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V + +GPEGG+ +E + L S F ++LG R+LRSD A A +AL A Sbjct: 376 GVLVAVGPEGGWVEPDELQLLQSFGFQA-VTLGSRVLRSDVAVNALLALAHA 426 >gi|163784445|ref|ZP_02179323.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1] gi|159880282|gb|EDP73908.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1] Length = 202 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 93/185 (50%), Gaps = 14/185 (7%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-IRFKV-EYQSRSQTKQSDVQ 83 D+ H+ A V R+K D + N +G +L+K+ V K ++ K+ E + ++T Sbjct: 20 DEAHH-AFVKRIK-PDYFIRVNDLNGHIYLAKVLEVSKKHLKAKILEELTTNETHLKITL 77 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139 Y+ +P + +++D +I E+G+ PVI + + ++ +++ + T+++ +QC+ Sbjct: 78 YLCAPNQLSKVDELIPFITELGVYRFIPVICKNSAVKEKDILKKIEKWKKITLNSIKQCE 137 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 L I P L+ + + + N ++F + +N K + + V ++IG EGG Sbjct: 138 RLYPVIIEKPIKLKDIPSDAELN--VLFYER---EKNETLKNYCQLSVKKVNVVIGNEGG 192 Query: 200 YHSEE 204 + +E Sbjct: 193 FTQDE 197 >gi|315282369|ref|ZP_07870795.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii FSL S4-120] gi|313613989|gb|EFR87707.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii FSL S4-120] Length = 140 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLE 179 ++R++ AAEQ +P ++ + + L+ + H ++ A E G +++L Sbjct: 11 KIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSALA 70 Query: 180 KL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 L I +V + GPEGG +E L + LGPRILR++TA Sbjct: 71 SLFQTIKPGQSVLCIFGPEGGISEKELVLLQEVN-AKLAGLGPRILRTETA 120 >gi|302830234|ref|XP_002946683.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f. nagariensis] gi|300267727|gb|EFJ51909.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f. nagariensis] Length = 187 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 25/173 (14%) Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------------NTHYNMDRVRT 129 V + +K R +++++K E+G + P++T +Q + R+ Sbjct: 4 VAVACTTLKGGRAEWLVEKLTELGAFMMIPLVTERSQVGMTGRGCTAFFPNRISPGRLER 63 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFAD----ETCGSENSLEKLH 182 I+A +Q + + PPT L +L + + C I A T G + + E Sbjct: 64 VAIAATKQSLRPHVLHLAPPTALADVLPDDGGGESFCLIAVAGAPPLATRGCDAAGE--- 120 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + P + IGPEG + E L P+ LG LR++TAA+ +A Sbjct: 121 --SEGPLRVLFIGPEGDFTPAELAALVQA-GARPVGLGTNRLRTETAAIGLLA 170 >gi|145628642|ref|ZP_01784442.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae 22.1-21] gi|144979112|gb|EDJ88798.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae 22.1-21] Length = 106 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPI--KTNRL 94 M EG+ + LF+G + + +KI K KVE R K+S ++ + + R+ Sbjct: 1 MTEGEQLELFDGSNHIYPAKIIESNKK-SVKVEILGRELADKESHLKIHLGQVISRGERM 59 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 ++ IQKSVE+G+ I P+ + + +R+ + A+ CD Sbjct: 60 EFTIQKSVELGVNVITPLWSERC-GVKLDAERMDKKNPTMAKNCD 103 >gi|90415836|ref|ZP_01223769.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium HTCC2207] gi|90332210|gb|EAS47407.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium HTCC2207] Length = 236 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 26/225 (11%) Query: 25 SGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 SG Q+ +L V R + GD++ + +G G+ + K + + ++ S + Sbjct: 19 SGRQFDHLLTVQRAQVGDSVRIGVIDGPMGQGIIK-ALGSEQATLEITLDS-PPPPAIPL 76 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + I + + L +Q MG+ I V + Q+ + + I EQ Sbjct: 77 RLILALPRPKMLRRTLQSITAMGVKEIYLVNSSRVEKSFWQSPFLQPEALEEQMILGLEQ 136 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------NV 190 +P ++ L K + + + GS+ + H + +P V Sbjct: 137 ARDTQMPNLH-------LRKRFKPFVEDELGNIAKGSQALVA--HPVTEVPCPINCDSAV 187 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + IGPEGG+ E E L S+ F + + LGPRILR + A A ++ Sbjct: 188 TLAIGPEGGFIPYEIELLSSIGFQS-VHLGPRILRVEVAVPALIS 231 >gi|92113035|ref|YP_572963.1| hypothetical protein Csal_0907 [Chromohalobacter salexigens DSM 3043] gi|91796125|gb|ABE58264.1| protein of unknown function DUF558 [Chromohalobacter salexigens DSM 3043] Length = 236 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + +GPEGG+ E E L +L F T + LG RILR +TA A +A Sbjct: 189 VTLAVGPEGGFIPYEVERLQALGF-TGVHLGERILRVETAVTALLA 233 >gi|108757437|ref|YP_630256.1| 16S ribosomal RNA methyltransferase RsmE [Myxococcus xanthus DK 1622] gi|108461317|gb|ABF86502.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK 1622] Length = 254 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V + IGP+GG+ E + L + F P SLGPRILR +TA A + V + D Sbjct: 191 RVVLAIGPDGGWVPFEADLLEAHGF-HPFSLGPRILRVETAVPALLGQVALLRED 244 >gi|171778872|ref|ZP_02919934.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282518|gb|EDT47942.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 11/158 (6%) Query: 90 KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 K ++L+++ QK E+GM A V+ + D++ + AAEQ + Sbjct: 83 KGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKKLAKKADKLAKIALGAAEQSKRNVI 142 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199 P + + + +I A E E +L + + + GPEGG Sbjct: 143 PQVTLFEKRATFMAELEQFDKIFIAYEDSAKEGETAVLARELSQVKAGEKILFIFGPEGG 202 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EE + + LGPRI+R +TA + A++ V Sbjct: 203 ISPEEIAAFEEKGGLK-IGLGPRIMRVETAPLYALSSV 239 >gi|149184078|ref|ZP_01862426.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1] gi|148848212|gb|EDL62514.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1] Length = 114 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%) Query: 135 AEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNV 190 AEQ +P + P +L L+ N+D+ D G +++L L + + Sbjct: 1 AEQSHRQHVPNVEFPVSLTELVTLADNFDYKVVAFEEDAKIGEQSNLAGILRSAKPGDRL 60 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GPEGG +E L FV+ LGPRI+R++TA Sbjct: 61 LAVFGPEGGLTEKEVNVLKDHGFVS-CGLGPRIMRAETA 98 >gi|260205673|ref|ZP_05773164.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis K85] gi|289575065|ref|ZP_06455292.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539496|gb|EFD44074.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 262 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 23/218 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 GD+ + A V R++ G+ ++L +G + G+ +R +V + + V Sbjct: 22 GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K+ R + I+ + E G A R V + R R SAA Q Sbjct: 82 VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190 +P + + L+ Q V + G+ E + E++ A A ++ Sbjct: 142 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +++GPEGG +E L V + LGP +LR+ T Sbjct: 195 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTST 231 >gi|115374869|ref|ZP_01462142.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115368087|gb|EAU67049.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + P V + IGP+GG+ E L + F P +LGPRILR +TA Sbjct: 203 VGTAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETA 247 >gi|15609509|ref|NP_216888.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis H37Rv] gi|15841884|ref|NP_336921.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis CDC1551] gi|31793549|ref|NP_856042.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis AF2122/97] gi|121638251|ref|YP_978475.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662204|ref|YP_001283727.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis H37Ra] gi|148823574|ref|YP_001288328.1| hypothetical protein TBFG_12397 [Mycobacterium tuberculosis F11] gi|167968750|ref|ZP_02551027.1| hypothetical protein MtubH3_12215 [Mycobacterium tuberculosis H37Ra] gi|215404298|ref|ZP_03416479.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215412118|ref|ZP_03420882.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215431312|ref|ZP_03429231.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis EAS054] gi|215446615|ref|ZP_03433367.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T85] gi|218754100|ref|ZP_03532896.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219558363|ref|ZP_03537439.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T17] gi|224990745|ref|YP_002645432.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798551|ref|YP_003031552.1| hypothetical protein TBMG_01603 [Mycobacterium tuberculosis KZN 1435] gi|254365148|ref|ZP_04981194.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551419|ref|ZP_05141866.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187375|ref|ZP_05764849.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis CPHL_A] gi|260201496|ref|ZP_05768987.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis T46] gi|289443893|ref|ZP_06433637.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448014|ref|ZP_06437758.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium tuberculosis CPHL_A] gi|289553839|ref|ZP_06443049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570515|ref|ZP_06450742.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289746150|ref|ZP_06505528.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289754477|ref|ZP_06513855.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289758494|ref|ZP_06517872.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289762538|ref|ZP_06521916.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994523|ref|ZP_06800214.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis 210] gi|297634973|ref|ZP_06952753.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis KZN 4207] gi|297731966|ref|ZP_06961084.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis KZN R506] gi|298525853|ref|ZP_07013262.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776638|ref|ZP_07414975.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis SUMu001] gi|306780410|ref|ZP_07418747.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis SUMu002] gi|306785160|ref|ZP_07423482.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis SUMu003] gi|306789520|ref|ZP_07427842.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis SUMu004] gi|306793846|ref|ZP_07432148.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis SUMu005] gi|306798242|ref|ZP_07436544.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis SUMu006] gi|306804119|ref|ZP_07440787.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis SUMu008] gi|306972749|ref|ZP_07485410.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis SUMu010] gi|307080454|ref|ZP_07489624.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis SUMu011] gi|307085049|ref|ZP_07494162.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis SUMu012] gi|313659300|ref|ZP_07816180.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis KZN V2475] gi|54040530|sp|P67203|RSME_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|54042959|sp|P67202|RSME_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|2078027|emb|CAB08467.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882151|gb|AAK46735.1| conserved hypothetical protein TIGR00046 [Mycobacterium tuberculosis CDC1551] gi|31619142|emb|CAD97254.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493899|emb|CAL72374.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150662|gb|EBA42707.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506356|gb|ABQ74165.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148722101|gb|ABR06726.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224773858|dbj|BAH26664.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo 172] gi|253320054|gb|ACT24657.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416812|gb|EFD14052.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420972|gb|EFD18173.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium tuberculosis CPHL_A] gi|289438471|gb|EFD20964.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544269|gb|EFD47917.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289686678|gb|EFD54166.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289695064|gb|EFD62493.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289710044|gb|EFD74060.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289714058|gb|EFD78070.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298495647|gb|EFI30941.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214955|gb|EFO74354.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis SUMu001] gi|308326731|gb|EFP15582.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis SUMu002] gi|308330144|gb|EFP18995.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis SUMu003] gi|308334005|gb|EFP22856.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis SUMu004] gi|308337786|gb|EFP26637.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis SUMu005] gi|308341467|gb|EFP30318.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis SUMu006] gi|308349264|gb|EFP38115.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis SUMu008] gi|308357829|gb|EFP46680.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis SUMu010] gi|308361775|gb|EFP50626.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis SUMu011] gi|308365397|gb|EFP54248.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis SUMu012] gi|323719038|gb|EGB28186.1| hypothetical protein TMMG_01663 [Mycobacterium tuberculosis CDC1551A] gi|326903988|gb|EGE50921.1| hypothetical protein TBPG_01877 [Mycobacterium tuberculosis W-148] gi|328458319|gb|AEB03742.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 262 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 23/218 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 GD+ + A V R++ G+ ++L +G + G+ +R +V + + V Sbjct: 22 GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 81 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K+ R + I+ + E G A R V + R R SAA Q Sbjct: 82 VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 141 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190 +P + + L+ Q V + G+ E + E++ A A ++ Sbjct: 142 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +++GPEGG +E L V + LGP +LR+ T Sbjct: 195 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTST 231 >gi|308375866|ref|ZP_07445358.2| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis SUMu007] gi|308377996|ref|ZP_07481181.2| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis SUMu009] gi|308344953|gb|EFP33804.1| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis SUMu007] gi|308353884|gb|EFP42735.1| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis SUMu009] Length = 259 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 23/218 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84 GD+ + A V R++ G+ ++L +G + G+ +R +V + + V Sbjct: 19 GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 78 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K+ R + I+ + E G A R V + R R SAA Q Sbjct: 79 VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 138 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190 +P + + L+ Q V + G+ E + E++ A A ++ Sbjct: 139 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 191 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +++GPEGG +E L V + LGP +LR+ T Sbjct: 192 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTST 228 >gi|310820109|ref|YP_003952467.1| hypothetical protein STAUR_2848 [Stigmatella aurantiaca DW4/3-1] gi|309393181|gb|ADO70640.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 248 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + P V + IGP+GG+ E L + F P +LGPRILR +TA Sbjct: 186 VGTAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETA 230 >gi|297185081|gb|ADI21190.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09] Length = 44 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 15/26 (57%), Positives = 24/26 (92%) Query: 217 LSLGPRILRSDTAAVAAMALVQAICG 242 +SLGPRILR++TA++AA++++QA G Sbjct: 19 ISLGPRILRTETASLAAISIIQAKWG 44 >gi|146305552|ref|YP_001186017.1| hypothetical protein Pmen_0515 [Pseudomonas mendocina ymp] gi|145573753|gb|ABP83285.1| protein of unknown function DUF558 [Pseudomonas mendocina ymp] Length = 236 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQAAGLQPVQLGERILRVETAVPALLA 233 >gi|269214516|ref|ZP_06158620.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970] gi|269209685|gb|EEZ76140.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970] Length = 52 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG+ +E++ F ++LG RILR++TAA+AA+A +Q + GD+ Sbjct: 1 MVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 51 >gi|284990178|ref|YP_003408732.1| hypothetical protein Gobs_1645 [Geodermatophilus obscurus DSM 43160] gi|284063423|gb|ADB74361.1| protein of unknown function DUF558 [Geodermatophilus obscurus DSM 43160] Length = 255 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 43/216 (19%), Positives = 94/216 (43%), Gaps = 23/216 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 G + + VLR+ G+ + + +G+ +++ G + +R +V + ++ Sbjct: 34 GAEGRHAVDVLRLTPGERVRVGDGRGTVAAGEVTAAGPQGLRVQVSARHEVPPPALELVL 93 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAAEQC 138 + + K R ++ + E+G+ I P +TR+ ++ + + R +A++Q Sbjct: 94 VQALPKGERGPLAVELATELGVDRIVPWAASRCVTRWREDRAAKGVAKWRAAARAASKQS 153 Query: 139 DILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAI 192 +P + TT + D + +V ++ H +A I ++A+ Sbjct: 154 RRPRVPEVTDVLTTRQVCGALADVDVALVLHEQA---------RHPLARIELPTSGSIAV 204 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 ++GPEGG E L++ P+ LGP +LR+ T Sbjct: 205 IVGPEGGLSDGEVVALNAA-GARPVRLGPEVLRTST 239 >gi|224437230|ref|ZP_03658207.1| 16S rRNA m3U1498 methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313143692|ref|ZP_07805885.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128723|gb|EFR46340.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 229 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 27/230 (11%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK--SIRFKVEYQSRSQT 77 Q + S D + Y+ R++ I + N +D + + I+ + K ++ K+ Q ++ Sbjct: 13 QVEISNDDFTYIIKARRLQLDSVIKVRNLQDKKLYTYTIAEIKKKSALLTKISEQDSPKS 72 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAE 136 S + +++ I ++ + E+G+ I ++Q N+ R++ IS+ + Sbjct: 73 HFSPLHLLWAIIDPKVIEKTLPFLNELGISRISFFYAEFSQRQFSLNLQRMQKILISSCQ 132 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN 189 QC + L LE +LK++D C+ F E N + A + Sbjct: 133 QCGRIDL------MELE-VLKDFDCVCERYTPFYAFDFGGEDIRQHNPF---NEGAENGS 182 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMALVQ 238 V +++G EGG+ E++ F ++L ILRS++A+V +L + Sbjct: 183 VRVMVGAEGGFSQRERQR-----FAKIITLNDTLILRSESASVFLASLAK 227 >gi|297194445|ref|ZP_06911843.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718746|gb|EDY62654.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 248 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 20/231 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82 G + + V R++ G++I+L +G G + ++ GK R VE + + Q + + Sbjct: 25 GPEGRHAVSVRRLQPGEDIVLTDGGGRGASGTVVTTEGKD-RLTVEVRECRKEPQPEPRI 83 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAE 136 + + K +R + ++ E G+ A+ P IT++ + ++ + R A + Sbjct: 84 TVVQALPKGDRGELAVETMTETGVDAVVPWSAARCITQWRGERGAKSLAKWRATAREAGK 143 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAIL 193 Q L P + T + + E E +L A A +P ++ ++ Sbjct: 144 QSRRLRFPEVSEAATTKQVAALLADADFAAVLHE----EGALP--LATAELPTAGSIVLV 197 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +GPEGG EE L + P LG +LR+ TA AA AL+ G W Sbjct: 198 VGPEGGVSPEEL-ALFAEAGARPYRLGRSVLRTSTAGTAATALLLGRTGRW 247 >gi|328949325|ref|YP_004366662.1| ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] gi|328449649|gb|AEB15365.1| Ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] Length = 254 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%) Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RVRTYTISAAEQCDILT 142 PI+ RL ++ +G+ + T + ++ D + + + Q Sbjct: 98 PIQLKRL---LRDMASLGVQEVHLTGTELGEKSYLKSDLATKGEAEKFLLDGSVQAGSTQ 154 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL-IGPEGGYH 201 +P ++ TL+ L+ D +++ D E S A+ P AI IG E G+ Sbjct: 155 IPKLFIHQTLKNCLEQIDLEGKLLALDNI---EPSQSLSCALKEKPQKAIAAIGSERGWT 211 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + E++ F LS+G RILR++TA+ A++L+ Sbjct: 212 NYERQLFRQNGFEL-LSMGKRILRTETASTVAVSLI 246 >gi|227889814|ref|ZP_04007619.1| glycosyltransferase [Lactobacillus johnsonii ATCC 33200] gi|120400335|gb|ABM21391.1| glycosyltransferase [Lactobacillus johnsonii] gi|227849678|gb|EEJ59764.1| glycosyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 342 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + LE+ +KN +V + ++++LEKLH A N+ + +G + +SE+ + ++ Sbjct: 72 SVLEYGIKNTKTKYFLVCDPDDWLTDDALEKLHNFAKNSNLDVTVGDKYNIYSEDNKKVY 131 Query: 210 SLPFVTPLSLGPRILRSDTA 229 F L++ PR+ DTA Sbjct: 132 IPSFKKELNVKPRVA-YDTA 150 >gi|329728385|gb|EGG64822.1| RNA methyltransferase, RsmE domain protein [Staphylococcus aureus subsp. aureus 21189] Length = 106 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%) Query: 156 LKNWDHNCQIVFADETCGSE--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 + N+D+ I + +E E N + L V ++ GPEGG E + Sbjct: 18 IDNYDY-ILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS- 75 Query: 214 VTPLSLGPRILRSDTAAVAAMALV 237 T + LGPRILR++TA + A++ + Sbjct: 76 -TVVGLGPRILRAETAPLYALSAI 98 >gi|108563443|ref|YP_627759.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori HPAG1] gi|107837216|gb|ABF85085.1| hypothetical protein HPAG1_1018 [Helicobacter pylori HPAG1] Length = 226 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 37/245 (15%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59 FV PL + K G+ Y +L R+K + L N KDG E K + Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASVLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 VG + +E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARL---LEVMASKKT-----HLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQR 114 Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++R + I + EQC L + + + +LK + + F ET Sbjct: 115 NEKIDSAKLERFQKILIHSCEQCGRSALMELEVFSNTKEVLKAYPKASVLDFKGETLPIS 174 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234 EK ++IGPEGG+ E+ + PL + +L+S++A V Sbjct: 175 VGFEK----------GVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVA 221 Query: 235 ALVQA 239 ++ Q Sbjct: 222 SIAQV 226 >gi|120404793|ref|YP_954622.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium vanbaalenii PYR-1] gi|119957611|gb|ABM14616.1| protein of unknown function DUF558 [Mycobacterium vanbaalenii PYR-1] Length = 246 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 32/222 (14%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83 G++ H+ A V R + G+ + L +G + V K R Q R + V Sbjct: 21 GEEGHHAATVCRTRPGEELDLADGAGTVAHCVVEDVAKG-RLTARVQDRHLVAPPRPTVT 79 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRY--TQNTHYNMDRVRTYTISAAE 136 + + K+ R + ++ + E G A + R+ + R R SAA Sbjct: 80 VVQALPKSERSELAVELATEAGADAFIAWQASRCVARWDGAAKVDKGLRRWRAVARSAAR 139 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------- 188 Q +P + + L+++ C ++ LH A P Sbjct: 140 QSRRPYIPDVDGVVSTRDLVES-----------TRCAEPGTVLVLHESATRPLADAAAGQ 188 Query: 189 --NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +++GPEGG +E L V + LGP +LR+ T Sbjct: 189 NDPLTLIVGPEGGVADDELAALTDAGAVA-VRLGPTVLRTST 229 >gi|197123490|ref|YP_002135441.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K] gi|196173339|gb|ACG74312.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K] Length = 252 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 IGPEGG+ E L F P +LGPR+LR D A Sbjct: 194 IGPEGGWTPYEAAALRDRGF-APFTLGPRVLRVDAA 228 >gi|308184819|ref|YP_003928952.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori SJM180] gi|308060739|gb|ADO02635.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori SJM180] Length = 226 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 49/241 (20%), Positives = 94/241 (39%), Gaps = 31/241 (12%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD--------GEWLSKISYVG 62 FV PL + K G+ Y +L R+K + L N KD E K + + Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSFLYTYEHAEITKKHALLK 62 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 +E + +T I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARPLEVMANKKT-----HLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEK 117 Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + I + EQC L + + + +L + + F ET + Sbjct: 118 IDSTKLERFQKILIHSCEQCGRSVLMELEAFSNTKEMLNAYPKASVLDFKGETLPTSMGF 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALV 237 EK ++IGPEGG+ +E+ + PL + +L+S++A V ++ Sbjct: 178 EK----------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFVASIA 224 Query: 238 Q 238 Q Sbjct: 225 Q 225 >gi|296130048|ref|YP_003637298.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM 20109] gi|296021863|gb|ADG75099.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM 20109] Length = 252 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 27/236 (11%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84 G + + V R G+ + + +G ++++ VG + +R V+ + + Sbjct: 26 GSEGRHAGVVQRRGPGERVDVVDGAGVRLVARVRAVGPEGVRLDVDEVVVEPAPEPRLVL 85 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138 + + K +R + I+ + E+G+ + P ++ + + R +A +Q Sbjct: 86 VQALAKGDRDEMAIEAATEVGVDVVVPWQAERSIVVWRGERAQKSRARWIGTVRTATKQA 145 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---------- 188 +P + E L DH + + LH A P Sbjct: 146 RRARMPQV------EHAL---DHAALVARVGAVVAAGGVAVVLHETAATPLRDIALPAGG 196 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG S+ + + LGP +LR+ TA A+A++ G W Sbjct: 197 EVLVVVGPEGGI-SDREVAALTAAGAAVARLGPHVLRTSTAGPVALAVLADRLGRW 251 >gi|281357710|ref|ZP_06244197.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] gi|281315967|gb|EFA99993.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] Length = 239 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%) Query: 190 VAILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A++IGPEGG+ E + L H VTP++LG R LR++ A A +A + A Sbjct: 188 AALVIGPEGGFTGYEIDLLARHG---VTPVTLGRRTLRTEVAVPALLATLTA 236 >gi|226946565|ref|YP_002801638.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii DJ] gi|226721492|gb|ACO80663.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 235 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDKLQA-AGLAPVQLGERILRVETAVTALLA 232 >gi|219684898|ref|ZP_03539840.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219671843|gb|EED28898.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 238 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 29/153 (18%) Query: 100 KSVEMGMGAIRPVITR-------------------------YTQNTHYNMDRVRTYTISA 134 K + + +G IRP++ R Y + + + + I+ Sbjct: 73 KKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKHLIAG 132 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 A Q + LP I L+ LK + Q F + ++S +KL I + N I++ Sbjct: 133 AMQGGVTYLPKIKIMKNLKESLK---YIKQENFEIKILLEKDSKKKLIDIEQVNNATIIV 189 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 GPE G+ +EK+ + F + S+ ILR++ Sbjct: 190 GPERGFTEKEKQLITQYNF-SSCSISSNILRTE 221 >gi|308446109|ref|XP_003087098.1| hypothetical protein CRE_18396 [Caenorhabditis remanei] gi|308262620|gb|EFP06573.1| hypothetical protein CRE_18396 [Caenorhabditis remanei] Length = 410 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG+ E + L S L LG +LR+ +A A +A++ G W Sbjct: 359 LVVGPEGGFSDAELDALES-AGAEILVLGTTVLRTSSAGPAGLAVLNVALGRW 410 >gi|320010893|gb|ADW05743.1| protein of unknown function DUF558 [Streptomyces flavogriseus ATCC 33331] Length = 248 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 24/235 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQS--RSQTKQSD 81 G + + V R+ G++++L +G+ G W + + GK S Sbjct: 21 GPEGRHAVSVRRLNPGEDLVLTDGR-GRWAEGVVRAAEGKDRLLVTGLVSVHEEPAPAPR 79 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTISAA 135 + + + K +R + ++ E G+ AI P IT++ + ++ + R+ A Sbjct: 80 ITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWKGDRGLKSLAKWRSTAREAG 139 Query: 136 EQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---N 189 +Q + P + T + LL D ++ D GSE A A +P Sbjct: 140 KQSRRVRFPEVANAMTTKQVAALLAGADF-AGVLHEDRDSGSEP-----LATAELPAEGT 193 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG +E LGP +LR+ TA AA AL+ G W Sbjct: 194 IVLVVGPEGGVSPQELAAFAEAGAPA-YRLGPSVLRTSTAGTAAAALLMGRTGRW 247 >gi|296272043|ref|YP_003654674.1| hypothetical protein Arnit_0503 [Arcobacter nitrofigilis DSM 7299] gi|296096218|gb|ADG92168.1| protein of unknown function DUF558 [Arcobacter nitrofigilis DSM 7299] Length = 222 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 27/225 (12%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIRFKVEYQSRSQTK 78 K GD Y YL R K G + N K+ S IS ++R ++ + + Sbjct: 15 KVEGDIYKYLFKARREKIGSTVFFRNLKNNFIYSYEIFDISKKDANLRL-IKKEEKIVEA 73 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137 + + I++ + ++ + E+G+ I Y+Q N N+++ I++++Q Sbjct: 74 NNKLHIIWAIVDPKTIEKQLPYLNEIGVDKITFFYADYSQKNFKLNIEKFEKILINSSQQ 133 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C ++ + +L+ +L ++ + F++ + ++ +I++G E Sbjct: 134 CGRSSIIKLEIIASLDEVLTSYKDSFVFNFSNNHINDKKDIK-----------SIIVGCE 182 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPR---ILRSDTAA--VAAMALV 237 GG+ +E E F ++G ILRS+TA +AA +V Sbjct: 183 GGFSPKELE-----KFTEEKTVGINSNLILRSETAVTTIAAKLIV 222 >gi|111114883|ref|YP_709501.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo] gi|216263936|ref|ZP_03435930.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] gi|110890157|gb|ABH01325.1| hypothetical protein BAPKO_0062 [Borrelia afzelii PKo] gi|215979980|gb|EEC20802.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] Length = 238 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 +NS + L I N I++GPE G+ +EK+ + F + S+ P ILR++ Sbjct: 170 KNSKKNLIDIEQTNNATIIVGPERGFTEKEKQLITQYNFAS-YSISPNILRTE 221 >gi|332686843|ref|YP_004456617.1| ribosomal RNA small subunit methyltransferase E [Melissococcus plutonius ATCC 35311] gi|332370852|dbj|BAK21808.1| ribosomal RNA small subunit methyltransferase E [Melissococcus plutonius ATCC 35311] Length = 141 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 13/113 (11%) Query: 126 RVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKL- 181 R+ + AAEQ LP + T L L +N+D Q++ A E + L Sbjct: 12 RLNKIALEAAEQSHRQWLPSVKLLKTGKELVALFQNYD---QVIVAYEESAKQGDTHSLV 68 Query: 182 HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + + + GPEGG+ +E T+ T LGPRILR++TA Sbjct: 69 KSFTSLDKNKKNKILAIFGPEGGFSPKEI-TIFKQAGATLCGLGPRILRAETA 120 >gi|302188582|ref|ZP_07265255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae 642] Length = 235 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 187 SVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|222625729|gb|EEE59861.1| hypothetical protein OsJ_12443 [Oryza sativa Japonica Group] Length = 501 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 15/119 (12%) Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +DR++ ++A +QC + + PP + L Q V + S E Sbjct: 375 RVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADL--------QPVVSQSKLAFVASAESPP 426 Query: 183 AIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ +P +++GPEG + EE L + V P+ LGP LR +TA ++ ++ Sbjct: 427 LLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAV-PVGLGPCRLRVETATISLLS 484 >gi|149198291|ref|ZP_01875337.1| choline sulfatase [Lentisphaera araneosa HTCC2155] gi|149138587|gb|EDM26994.1| choline sulfatase [Lentisphaera araneosa HTCC2155] Length = 467 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 21/132 (15%) Query: 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP------- 144 N+L +K MG+G RP + ++ ++M + T + + DI +P Sbjct: 184 NKLTQNYEKPFFMGVGFYRPHVPQFAPQKWFDMYPLETIQMPKMREADIADIPQYGIDLT 243 Query: 145 ---FIYPPTTLEFLLKNWDHN-------CQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 + P T E+ LKN + + F D G L+ L A H N +++ Sbjct: 244 REKHVAP--TYEWALKNNEEKKLVQSYLACVSFVDAQIGK--VLDALDAGPHKENTFVVL 299 Query: 195 GPEGGYHSEEKE 206 + G+H EKE Sbjct: 300 YSDHGFHLGEKE 311 >gi|294629283|ref|ZP_06707843.1| RsmE family RNA methyltransferase [Streptomyces sp. e14] gi|292832616|gb|EFF90965.1| RsmE family RNA methyltransferase [Streptomyces sp. e14] Length = 293 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 24/235 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQS--RSQTKQSD 81 G + + V R++ G++++L +G G W + + GK + +S +Q Sbjct: 66 GPEGRHAVSVKRLRPGEDVVLTDGH-GRWAEGVVKAAEGKDRLVITDLESVVEEPPEQPR 124 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAA 135 + + + K R + ++ E+G+ AI P IT++ + + + R A Sbjct: 125 ITVVQALPKGERGELAVETMTEVGVDAIVPWQAARCITQWKGDRGLKALGKWRATAREAG 184 Query: 136 EQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---N 189 +Q + P + T + LL D ++ +D GSE A A +P Sbjct: 185 KQSRRVRFPEVAETATTKQVAALLAKADFAA-VLHSDFEYGSEP-----LATAELPAEGE 238 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG S+E LG +LR+ TA AA AL+ G W Sbjct: 239 IVLVVGPEGGVSSDELAQFREA-GARAYVLGRSVLRTSTAGTAAAALLLGRTGRW 292 >gi|296119869|ref|ZP_06838423.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes DSM 20306] gi|295967023|gb|EFG80294.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes DSM 20306] Length = 260 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 143 LPFIYPPTTLEFLLKNWDH--NCQI-VFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +PF + P T L+++ +C I V ++ S + A ++ +LIGPEGG Sbjct: 157 VPFAHGPLTTAQLVQHLAEREDCLIYVLHEDATDSIKDVPLTTDAATSTDLILLIGPEGG 216 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRS 226 EE TL P+ LGP +LR+ Sbjct: 217 IGPEELATLQKA-GAHPIKLGPEVLRT 242 >gi|158313945|ref|YP_001506453.1| 16S ribosomal RNA methyltransferase RsmE [Frankia sp. EAN1pec] gi|158109350|gb|ABW11547.1| protein of unknown function DUF558 [Frankia sp. EAN1pec] Length = 242 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 85/223 (38%), Gaps = 20/223 (8%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 G + + A V R++ G+ + + +G ++ VG+ V + RS Sbjct: 3 GGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRLV 62 Query: 85 IFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAEQ 137 + + K +R + ++ E+G+ I P + R+ + + R AA+Q Sbjct: 63 VAQALAKGDRGELAVEMLTEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAKQ 122 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-----GSENSLEKLHAIAHIPNVA- 191 P + P L + V ET G +L+ A+ +P V Sbjct: 123 SRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTPLAGLARALQPAFAVEPVPAVEP 182 Query: 192 ------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +++GPEGG E E L + V LGP +LR+ T Sbjct: 183 EIGEILLVVGPEGGVADGELEALTAAGAVAG-RLGPTVLRTST 224 >gi|330899251|gb|EGH30670.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. japonica str. M301072PT] gi|330938660|gb|EGH42225.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. pisi str. 1704B] Length = 235 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 187 QVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|297199593|ref|ZP_06916990.1| ribosomal RNA small subunit methyltransferase E [Streptomyces sviceus ATCC 29083] gi|297147443|gb|EDY57513.2| ribosomal RNA small subunit methyltransferase E [Streptomyces sviceus ATCC 29083] Length = 292 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 25/235 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 G + + V R++ G++++L +G G W + +G + ++ Q S + DVQ Sbjct: 66 GPEGRHAVSVKRLQPGEDVILTDGA-GHWADCV-VLGTEGKDRLIVQLDSVNEAPDVQPR 123 Query: 86 FSPI----KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAA 135 + + K +R + ++ E+G+ AI P IT++ + + R A Sbjct: 124 ITVVQALPKGDRGELAVETMTEVGVDAIVPWQAARCITQWKGERGLKALGKWRATAREAG 183 Query: 136 EQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--- 189 +Q + P I T + LL D ++ +D GS A A +P+ Sbjct: 184 KQSRRIRFPDIADAATTKQVAALLAKADFAA-VLHSDFERGSAP-----LATAELPDEGE 237 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG +E L LG +LR+ TA AA AL+ G W Sbjct: 238 IVLVVGPEGGVAKDEL-ALFEEAGARAYVLGSTVLRTSTAGTAATALLLGRTGRW 291 >gi|330977177|gb|EGH77135.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 235 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 A V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 183 AATEQVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|289672001|ref|ZP_06492891.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae FF5] Length = 235 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 A V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 183 AATEQVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|332670855|ref|YP_004453863.1| hypothetical protein Celf_2349 [Cellulomonas fimi ATCC 484] gi|332339893|gb|AEE46476.1| protein of unknown function DUF558 [Cellulomonas fimi ATCC 484] Length = 256 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG +E L V + LGP +LR+ TA A+A++ G W Sbjct: 204 VVVGPEGGIGEDELARLVDAGAVA-VRLGPHVLRTSTAGPVALAILAQRLGRW 255 >gi|289624222|ref|ZP_06457176.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647404|ref|ZP_06478747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 2250] gi|298485111|ref|ZP_07003207.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160363|gb|EFI01388.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330865688|gb|EGH00397.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 235 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 187 QVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|330951280|gb|EGH51540.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit 7] Length = 235 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 187 QVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|255030926|ref|ZP_05302877.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes LO28] Length = 167 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 11/140 (7%) Query: 100 KSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 KS E+G A R V+ + ++R++ AAEQ +P ++ + + Sbjct: 9 KSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFK 68 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL--IGPEGGYHSEEKETLH 209 L+ H ++ A E E L ++ P ++L GPEGG SE++ L Sbjct: 69 ELMFGHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLCIFGPEGGI-SEKELLLL 127 Query: 210 SLPFVTPLSLGPRILRSDTA 229 LGPRILR++TA Sbjct: 128 EEANAKLAGLGPRILRTETA 147 >gi|32266493|ref|NP_860525.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter hepaticus ATCC 51449] gi|32262544|gb|AAP77591.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 236 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 43/241 (17%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQTKQ 79 + + +YL V R++ G+ + L N D LS+I ++R + + S K Sbjct: 16 VNDENVNYLMKVRRVQLGETLALRNLNDDNLYTYELSEIDKKALTLRLQASQNAPSNIK- 74 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD--RVRTYTISAAEQ 137 S + +++ I+ ++ + E+G+ I ++Q H+ + R+ I + +Q Sbjct: 75 SHLHLLWAIIEPKIIEKTLPMLNELGVSRISFFYAAFSQG-HFKLSLPRMEKILIQSCQQ 133 Query: 138 C---DILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSE-------NSLEKLHAI 184 C D++ L L KN+ C+ +A + G + + K+ Sbjct: 134 CGRSDLMELE----------LYKNFHRICEEYTDFYAFDFGGVDICNFTPCQNHSKIGKE 183 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMALVQAICGD 243 H+ V I++G EGG+ ++E+E F ++L ILRS++A+V + +I Sbjct: 184 KHL--VRIMVGAEGGFSTKERER-----FAKIITLNDTLILRSESASV----FIASIAKM 232 Query: 244 W 244 W Sbjct: 233 W 233 >gi|15639026|ref|NP_218472.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025266|ref|YP_001933038.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum SS14] gi|8928461|sp|O83075|RSME_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|3322287|gb|AAC65027.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017841|gb|ACD70459.1| hypothetical protein TPASS_0032 [Treponema pallidum subsp. pallidum SS14] gi|291059447|gb|ADD72182.1| ribosomal RNA small subunit methyltransferase E [Treponema pallidum subsp. pallidum str. Chicago] Length = 266 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%) Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQCDILT 142 PI+ R+ ++ +G+ +I V T + ++ + M+++ TY I EQ Sbjct: 88 PIQLRRI---LRDVSSLGISSIHLVGTELGERSYLDSGLAHMEKMHTYLIRGLEQAGGTK 144 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADET-----CGSENSLEKLHAIAHIPNVA-ILIGP 196 LP I ++ H + D T ++N+L L + A +V I IG Sbjct: 145 LPLITVSESVRTFCSQHTH----ILGDSTHQKLILDTKNTLTDLGSAALRGDVLWIAIGS 200 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E G+ E+ ++ F + +G R LR++T Sbjct: 201 ERGWTESERLLFSAMGF-RAVDMGRRTLRTET 231 >gi|330971760|gb|EGH71826.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 235 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|330962012|gb|EGH62272.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 235 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|66043648|ref|YP_233489.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae B728a] gi|63254355|gb|AAY35451.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv. syringae B728a] Length = 235 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|330964770|gb|EGH65030.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 235 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|28872270|ref|NP_794889.1| hypothetical protein PSPTO_5158 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855524|gb|AAO58584.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 235 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|330877927|gb|EGH12076.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 235 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|213969416|ref|ZP_03397553.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] gi|301386676|ref|ZP_07235094.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato Max13] gi|302063217|ref|ZP_07254758.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato K40] gi|302132114|ref|ZP_07258104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925787|gb|EEB59345.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] gi|331016059|gb|EGH96115.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 235 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232 >gi|88705941|ref|ZP_01103649.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88699655|gb|EAQ96766.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 244 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 22/216 (10%) Query: 26 GDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83 G + +L VL+++ GDN+ + NG G + +G+ + + + Sbjct: 21 GRRLLHLNTVLKVQAGDNVRVGQLNGSIGT--GTVRSIGEDLAVIDVSLDQPAPAPLALT 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQC 138 + + + L +++ E G+ I + + Y Q+ +R +S EQ Sbjct: 79 VVMALPRPKMLRRILRGMAETGIKEIHLINSFRVEKSYWQSPLLQAPALREALLSGLEQA 138 Query: 139 DILTLPFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +P + + P + L D C D G + E A P++ + Sbjct: 139 MDTVMPTVHLHRRFRPFAEDSLPALCD-GC-----DALLGDLGAAEDYPASPSSPSL-LA 191 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +GPEGG+ E+E + + P+SLGPR+LR +TA Sbjct: 192 LGPEGGFIPFEQELIINA-GARPVSLGPRMLRLETA 226 >gi|237798073|ref|ZP_04586534.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806073|ref|ZP_04592777.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020925|gb|EGI00982.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027186|gb|EGI07241.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 138 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V + IGPEGG+ E + L + P+ LG RILR +TA A +A Sbjct: 91 VTLAIGPEGGWIPYEIDLLQK-SGLQPVQLGERILRVETAVTALLA 135 Searching..................................................done Results from round 2 >gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040837|gb|ACT57633.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 245/245 (100%), Positives = 245/245 (100%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY Sbjct: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT Sbjct: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK Sbjct: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI Sbjct: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 Query: 241 CGDWY 245 CGDWY Sbjct: 241 CGDWY 245 >gi|254720129|ref|ZP_05181940.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. 83/13] Length = 248 Score = 301 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 116/245 (47%), Positives = 159/245 (64%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTDRIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQA 239 Query: 240 ICGDW 244 + GDW Sbjct: 240 VLGDW 244 >gi|319405184|emb|CBI78789.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 247 Score = 298 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 122/245 (49%), Positives = 156/245 (63%), Gaps = 2/245 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + LKRLFV L + + G Q YL HVLRMKEG ILLFNG+DGEWL+K+ + Sbjct: 1 MRANYKLKRLFVRQLLALNEEIVIEGQQASYLVHVLRMKEGTEILLFNGQDGEWLAKLIF 60 Query: 61 VGKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K I ++ +Q R QT SD+ Y F+P+K RLDYMIQK+VEMG+ + PVIT++TQ Sbjct: 61 IKKKIVVARLIHQERPQTTHSDLFYCFAPLKHMRLDYMIQKAVEMGVSVLYPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP P +LE L+NWD + F DE S N + Sbjct: 121 TRINMARIEANIIEASEQCGILSLPKCAPAVSLETFLENWDKTRALFFCDELNESYNPIS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 P + +LIGPEGG+ EE+ L PFV +SLGPRILR+DTAAVAA+ LV A Sbjct: 181 LFKKHGTNP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNA 239 Query: 240 ICGDW 244 GDW Sbjct: 240 TMGDW 244 >gi|49473945|ref|YP_031987.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse] gi|49239448|emb|CAF25798.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse] Length = 244 Score = 289 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 153/246 (62%), Gaps = 4/246 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I+ LKRLF+ PL + + K G + YL HVLRM+EG ILLFNG+DGEWL+K+ Sbjct: 1 MHINYKLKRLFIRQPLVLNEEIKIEGQKASYLIHVLRMQEGAEILLFNGQDGEWLAKLIT 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + K+ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 IKKRFVVVKLIHQERLQTAPSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T N R+ + A+EQC IL+LP P +L LL WD + F DE N L Sbjct: 121 TRINRTRMEANVVEASEQCGILSLPECVPAVSLVELLACWDETQPLFFCDEAHKLHNPLP 180 Query: 180 KLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L +P V LIGPEGG+ EE+ L FV P+ LGPRILR+DTAAV A+AL+ Sbjct: 181 LLKKHEMTVPGV--LIGPEGGFSKEERSFLKKHSFVIPIPLGPRILRADTAAVVALALLN 238 Query: 239 AICGDW 244 A GDW Sbjct: 239 ATVGDW 244 >gi|297183994|gb|ADI20114.1| uncharacterized protein conserved in bacteria [uncultured alpha proteobacterium EB080_L06A09] Length = 243 Score = 289 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 101/245 (41%), Positives = 141/245 (57%), Gaps = 4/245 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I S + RLFVD PL DQ +YL +V+R+ GD I +FNGKDGEW + + + Sbjct: 1 MNIRSKI-RLFVDTPLGEGQSILLDRDQANYLFNVMRLNIGDYISVFNGKDGEWQADVLH 59 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K +YQS Q D+ +F+PIK R D++++K+ EMG+ I PV T YT + Sbjct: 60 ANKRKGILVAKYQSMQQLNPPDLWLLFAPIKKTRTDFIVEKATEMGVSRIFPVNTDYTNS 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R+++++I AAEQC +P + + L +LK+W + ++F DE E Sbjct: 120 DRIKQSRLQSHSIEAAEQCGGTYVPPVDELSKLTSILKDWPKDRCLIFCDENKVGEAV-- 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K + AILIGPEGG+ E + L SL FVT +SLGPRILR+DTA VAA+A+ Q Sbjct: 178 KTFKSSVCDKWAILIGPEGGFSKNEIKYLKSLEFVTSISLGPRILRADTAVVAALAIWQK 237 Query: 240 ICGDW 244 GDW Sbjct: 238 EIGDW 242 >gi|167036024|ref|YP_001671255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1] gi|166862512|gb|ABZ00920.1| protein of unknown function DUF558 [Pseudomonas putida GB-1] Length = 239 Score = 289 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + Q HY+ VLRM GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q V + R+D+ IQK+ E+G I P+++ Sbjct: 61 VRVSLDQALTGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC TLP I+PP L L + + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLTEWLSSTQADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A +A LIGPEGG E E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPAGLAFLIGPEGGLSEAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|265985135|ref|ZP_06097870.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306839033|ref|ZP_07471853.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|264663727|gb|EEZ33988.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306405856|gb|EFM62115.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 242 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 115/239 (48%), Positives = 156/239 (65%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ D Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA+ GDW Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQAVLGDW 238 >gi|315122545|ref|YP_004063034.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495947|gb|ADR52546.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 254 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 170/255 (66%), Positives = 201/255 (78%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK+H LKRLFV+F L K QGKAS QYHYLAHVLRMKE + +L+FNG+DGEW+S ISY Sbjct: 1 MKMHPPLKRLFVNFSLQPKAQGKASDAQYHYLAHVLRMKEKEKVLIFNGEDGEWISTISY 60 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + KSI F VE+Q+R+QTK SD+ YIFSPIKTNRLDYMIQKSVEMG+ AIRPVITRYTQNT Sbjct: 61 IKKSISFNVEHQTRTQTKPSDLHYIFSPIKTNRLDYMIQKSVEMGVSAIRPVITRYTQNT 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 H N++R+RTY ISAAEQC+I++LP I+PP TL+ LL++WD N IVFADETC ENS K Sbjct: 121 HCNVNRMRTYAISAAEQCNIISLPSIHPPITLDTLLEDWDQNRHIVFADETCIHENS--K 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAA 230 + AIAHI ++A+LIGPEGG+H +EKE LHSLPFVTP+SLGPRILR Sbjct: 179 IQAIAHIVHMAVLIGPEGGFHPKEKEKLHSLPFVTPISLGPRILRADTAAVAAIA----- 233 Query: 231 VAAMALVQAICGDWY 245 LVQ+ CGDWY Sbjct: 234 -----LVQSTCGDWY 243 >gi|104783966|ref|YP_610464.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila L48] gi|95112953|emb|CAK17681.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 239 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + + Q HY+ VLRM GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFIDAPLGLGEH-ELPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q + S V + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVSLDQALPGQAESSLHVHLGQGLSRGERMDWAIQKATELGVNEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC ++P I+PP TL +K D + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSSVPVIHPPVTLAEWIKGSDADLKLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A +A LIGPEGG + E E + F LGPR+LR++TA V A+++ Sbjct: 176 --PLTSHAKPARLAFLIGPEGGLNDAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|144898953|emb|CAM75817.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 245 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 102/239 (42%), Positives = 152/239 (63%), Gaps = 2/239 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + RLFV L + DQ HYLA+V+R+K G+++ LFNG+DGEWL ++ V K S+ Sbjct: 1 MIRLFVANDLSADSLIGLDKDQSHYLANVMRVKAGEDVALFNGRDGEWLGRLDKVAKASV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +V+ QSR QT + D+ + +PIK + +D + +K+ E+G+ A+ PV T T + N D Sbjct: 61 TLQVQSQSRPQTPEPDLWLLAAPIKKDCIDLVAEKATELGISALWPVFTHRTVMSRVNTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ + AAEQC+ L++P + PT L L WD +VF DE+ G + LH++ Sbjct: 121 RLAANMVEAAEQCERLSVPEMREPTDLAKALAGWDAARPLVFLDESGGGAPITQALHSLQ 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P +A+L GPEGG+ E+ L LPF P+SLGPRILR++TAA+AA+++VQA+ GDW Sbjct: 181 PGP-LAVLTGPEGGFDDSERAMLARLPFAVPVSLGPRILRAETAAIAALSVVQALLGDW 238 >gi|148550061|ref|YP_001270163.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1] gi|148514119|gb|ABQ80979.1| protein of unknown function DUF558 [Pseudomonas putida F1] Length = 239 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + Q HY+ VLRM GD + LF+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKT 60 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q V + R+D+ IQK+ E+G I P+++ Sbjct: 61 VRVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC TLP I+PP L L + + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLAEWLSSTKADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + +A +IGPEGG E E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHEKPATLAFVIGPEGGLSEAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|26991662|ref|NP_747087.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida KT2440] gi|24986759|gb|AAN70551.1|AE016697_6 conserved hypothetical protein TIGR00046 [Pseudomonas putida KT2440] gi|313500961|gb|ADR62327.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 239 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + Q HY+ VLRM GD + LF+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKT 60 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q V + R+D+ IQK+ E+G I P+++ Sbjct: 61 VRVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC TLP I+PP TL L + + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + +A +IGPEGG E E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLISHEKPATLAFVIGPEGGLSEAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|49082184|gb|AAT50492.1| PA0419 [synthetic construct] Length = 241 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R FVD PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFVDQPLSLGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60 Query: 65 IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +LP I+PP LE L+ D + ++V Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A +A L+GPEGG E E + F + LGPR+LR++TA V A+A+ Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|126727781|ref|ZP_01743611.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium HTCC2150] gi|126702908|gb|EBA02011.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium HTCC2150] Length = 246 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 137/242 (56%), Gaps = 4/242 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 L RL+ D PL DQ HYL V+R K GD + LFNG+DGEW K+ + K Sbjct: 4 LSRLYTDHPLAQGHNIPLERDQAHYLFGVMRRKLGDEVELFNGRDGEWRGKVVHANKHRG 63 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +V +Q+R D+ +F+PIK R D++++K+ EMG I PV+T YT + + Sbjct: 64 ILEVTHQTRPLQMPPDLWLMFAPIKKARTDFIVEKATEMGAARIVPVMTEYTNSDRVRQE 123 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLH 182 +++ + + AAEQC +P + L+ +L NW Q++F DE + KL Sbjct: 124 KMQIHAVEAAEQCGGTYVPEVAELQKLDRMLDNWPDGRQLLFCDEGLIGRPTGLDQSKLT 183 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 A+ AILIGPEGG+ +E+ L SL FVT SLGPRILR+DTAAVAA+ L Q G Sbjct: 184 AVNKTGPWAILIGPEGGFSEKERNRLASLDFVTTQSLGPRILRADTAAVAALTLWQRELG 243 Query: 243 DW 244 DW Sbjct: 244 DW 245 >gi|15595616|ref|NP_249110.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PAO1] gi|218889161|ref|YP_002438025.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa LESB58] gi|254237347|ref|ZP_04930670.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254243517|ref|ZP_04936839.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9946275|gb|AAG03808.1|AE004479_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126169278|gb|EAZ54789.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196895|gb|EAZ60958.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218769384|emb|CAW25144.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 240 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R FVD PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFVDQPLSLGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60 Query: 65 IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +LP I+PP LE L+ D + ++V Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A +A L+GPEGG E E + F + LGPR+LR++TA V A+A+ Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|260431629|ref|ZP_05785600.1| surface protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415457|gb|EEX08716.1| surface protein [Silicibacter lacuscaerulensis ITI-1157] Length = 241 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 3/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL + +Q HYL V+R+ G + LFNG+DGEWL++++ GK Sbjct: 6 RLYVDHPLGAGQSVPLTREQAHYLFGVMRLAVGGQVALFNGRDGEWLAEVAEAGKRGGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+R D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 SCLEQTRPLQLPPDLWLLFAPIKKARTDFIVEKAAEMGAAKIMPVQTAFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ LL NW Q++F DE S +L A Sbjct: 126 QAHAVEAAEQCGGTFVPEVCDLQRLDKLLDNWPDGRQLMFCDEAEAG--SALRLAAQDKG 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E++ L LPF +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 184 RPWAILIGPEGGFSDAERQRLKDLPFTHVVSLGPRILRADTAAVAAMTLWQQALGDW 240 >gi|149913421|ref|ZP_01901954.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b] gi|149812541|gb|EDM72370.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b] Length = 241 Score = 284 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL + DQ HYL V+R GD +L FNG+DGEWL + K Sbjct: 7 RLYVEHPLGEGQTVPLNRDQAHYLFAVMRRGAGDALLAFNGRDGEWLVTVQEASKKGGVL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +VE Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 67 RVEKQTAPQRNPPDLWVLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + I AAEQC +P + L+ LL++W Q++F DE + + L A+ Sbjct: 127 QAHAIEAAEQCGGTYVPEVADLQKLDQLLQDWPEGRQLMFCDEALAG--AAQNLGAV-GG 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E+ LH+LPF P+SLGPRILR+DTAAVAAM + Q GDW Sbjct: 184 PAWAILIGPEGGFSEAERARLHALPFAHPVSLGPRILRADTAAVAAMTVWQMALGDW 240 >gi|296386918|ref|ZP_06876417.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PAb1] gi|313111958|ref|ZP_07797747.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa 39016] gi|310884249|gb|EFQ42843.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa 39016] Length = 240 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 117/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R FVD PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFVDQPLALGQH-DLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60 Query: 65 IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +LP I+PP LE L+ D + ++V Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A +A L+GPEGG E E + F LGPR+LR++TA V A+A+ Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGF-HAARLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|170719665|ref|YP_001747353.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619] gi|169757668|gb|ACA70984.1| protein of unknown function DUF558 [Pseudomonas putida W619] Length = 239 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + Q HY+ VLRM GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q + + + R+D+ IQK+ E+G I P+++ Sbjct: 61 VRVSLDQAVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC LP I P TL +K D + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSILPIIRAPVTLGDWIKGSDADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + +A LIGPEGG E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPARLAFLIGPEGGLSEAEVDQAKGAGF-QAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|89091936|ref|ZP_01164891.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92] gi|89083671|gb|EAR62888.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92] Length = 242 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R + PL K++ + S + +++ LRMK GD ++LFNG E+L+++S V K Sbjct: 2 RIPRFYDPQPLSEKSEIQLSDEVVQHVSRALRMKVGDQLILFNGNGVEYLAELSQVEKRK 61 Query: 66 --RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 VE + V S + R+DY +QKS EMG+ I P+ + Sbjct: 62 ASAHIVETIQSNSETPLTVHIGQSLSRGERMDYAVQKSTEMGVHQITPLFSERCEVKLPE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++ + ISA EQ + P I P L+ L D ++V + Sbjct: 122 ERQAKRINHWQQIAISACEQSGRVNPPLIAKPENLKSWLAQQDAELKLVLHHHSEM---- 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +VA+LIGPEGG +E E F PL+LGPR++R++TA VAA+ L+ Sbjct: 178 --PLQEMKPPSSVALLIGPEGGLTEDEVELAQEFGF-KPLTLGPRVMRTETAPVAALTLL 234 Query: 238 QAICGD 243 + GD Sbjct: 235 NYLWGD 240 >gi|107099405|ref|ZP_01363323.1| hypothetical protein PaerPA_01000417 [Pseudomonas aeruginosa PACS2] Length = 240 Score = 282 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R FVD PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFVDQPLSLGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60 Query: 65 IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +LP I+PP LE L+ + ++V Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRGDDLRLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A +A L+GPEGG E E + F + LGPR+LR++TA V A+A+ Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|260773596|ref|ZP_05882512.1| ribosomal RNA small subunit methyltransferase E [Vibrio metschnikovii CIP 69.14] gi|260612735|gb|EEX37938.1| ribosomal RNA small subunit methyltransferase E [Vibrio metschnikovii CIP 69.14] Length = 243 Score = 281 bits (720), Expect = 6e-74, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D +++ VLRM+ G ++ LF+G D E+ + IS + K Sbjct: 2 RIPRIYHPSPIHQLGTLALSDDAANHIGKVLRMQPGQSVTLFDGSDAEFPAVISEISKK- 60 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V+ Q R + ++ + +++++ IQKSVE+G+ I P+++ Sbjct: 61 QLTVDIQQRIEKSIESPLNLHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC +P I P LE ++ S N Sbjct: 121 PKRFEKKLQQWQKIAIAACEQCGRNIVPVIRPVMELEAWCAEPSQALKLNLHPRASYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIGPEGG +E F L LGPR+LR++TAA+ A+ Sbjct: 181 TLPE-----PVNKVRLLIGPEGGLSEQEIAMTEQYHFAETL-LGPRVLRTETAALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|197334623|ref|YP_002155192.1| protein YggJ [Vibrio fischeri MJ11] gi|197316113|gb|ACH65560.1| protein YggJ [Vibrio fischeri MJ11] Length = 243 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+ L + + S D +++ V+RMKEG+++LLF+G E+ + I+ K Sbjct: 2 RIPRIHHPELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGAEFPAVITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ E RS ++ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VEVEITERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNVITPLISERCGVKLNK 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +D+ + I+A EQC T+P I P +LE ++ S N+ Sbjct: 122 ERFEKKLDQWQKIAIAACEQCGRNTIPEIRPIMSLEEWCAEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + NV +LIGPEGG S+E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVTNVRLLIGPEGGLSSDEINMTEQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|59711043|ref|YP_203819.1| hypothetical protein VF_0436 [Vibrio fischeri ES114] gi|59479144|gb|AAW84931.1| predicted protein [Vibrio fischeri ES114] Length = 243 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+ L + + S D +++ V+RMKEG+++LLF+G E+ + I+ K Sbjct: 2 RIPRIHHPELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGSEFPAVITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ E RS ++ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VEVEITERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNK 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +D+ + I+A EQC T+P I P +LE ++ S N+ Sbjct: 122 ERFEKKLDQWQKIAIAACEQCGRNTVPEIRPIMSLEEWCAEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + NV +LIGPEGG S+E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVTNVRLLIGPEGGLSSDEISMTEQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|149191952|ref|ZP_01870183.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1] gi|148834219|gb|EDL51225.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1] Length = 243 Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ P+ S D ++ VLRMKEG +LLF+G E+ + I+ +GK Sbjct: 2 RIPRIYHPEPIHALGTLALSEDAAGHVGRVLRMKEGQEVLLFDGSGHEFPATITQIGKKN 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + E S S D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VDVDIQEKVSTSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P +LE ++ S N+ Sbjct: 122 KRFEKKLQQWQKIAISACEQCGRNTIPEIRPIMSLEQWCAEPSEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVTKVRLLIGPEGGLSAQEIEMTEQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|259415138|ref|ZP_05739060.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259349048|gb|EEW60802.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 246 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 137/247 (55%), Gaps = 6/247 (2%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ + RL+VD PL DQ HYL V+R+ G + LFNG+DGEW ++++ Sbjct: 1 MNAKV-RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLAVGARVALFNGRDGEWQAEVAEAS 59 Query: 63 K-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 K S QS+ D+ IF+PIK R D++++K+ EMG I PV T +T + Sbjct: 60 KRSGVLTCVEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATDFTNSER 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-LEK 180 DR++ + + AAEQC +P + L LL +W + Q++F DE + L+ Sbjct: 120 IRQDRLQAHAVEAAEQCGGTYVPEVADLQKLSALLDHWPEDRQLMFCDEAEVGQRLFLDA 179 Query: 181 LHAIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + AILIGPEGG+ E++ L ++ +SLGPRILR+DTAAVAAM L Sbjct: 180 VQSEKPPTASGSWAILIGPEGGFSDAERKRLQAMQQAHVVSLGPRILRADTAAVAAMTLW 239 Query: 238 QAICGDW 244 Q GDW Sbjct: 240 QRALGDW 246 >gi|77461509|ref|YP_351016.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens Pf0-1] gi|77385512|gb|ABA77025.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFIDAPLSTGEH-ELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKKR 60 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +++ Q Q + + R+D+ IQK+ E+G+ I P+ + Sbjct: 61 VVVQIDEQFAGQVESPLKIHLGQGLSRGERMDWAIQKATELGVTEITPIFSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +P I+PP L LK + ++V Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A +A LIGPEGG E E + F LGPR+LR++TA V A+A+ Sbjct: 174 AEPLVSHAKPSTLAFLIGPEGGLSDAEVEQAKAGGF-HAARLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|254463111|ref|ZP_05076527.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium HTCC2083] gi|206679700|gb|EDZ44187.1| conserved hypothetical protein TIGR00046 [Rhodobacteraceae bacterium HTCC2083] Length = 240 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 133/237 (56%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RLFVD PL S Q HYL V+R+ G + LFNGKDGEW +I GK Sbjct: 6 RLFVDQPLAEGNCVSVSQAQAHYLFGVMRLAVGGAVSLFNGKDGEWRCEILEAGKRKGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q++ D+ F+PIK R D++++K+ EMG I PV T +T + +R+ Sbjct: 66 RCTVQTKPLQMPPDLWLCFAPIKKTRTDFIVEKATEMGASKICPVQTEFTNSERIKQERL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + + L +L +W QI+F DET L + + Sbjct: 126 QAHAVEAAEQCGGTYVPEVIALSKLSTMLDHWPEERQIMFCDET--ELGVASSLASASRG 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E++ LHS+P +SLGPRILR+DTAAVAAM + QA GDW Sbjct: 184 P-WAILIGPEGGFSPAERKRLHSMPEAHVVSLGPRILRADTAAVAAMTIWQAALGDW 239 >gi|183596310|ref|ZP_02958338.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827] gi|188023914|gb|EDU61954.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827] Length = 243 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I T D +++ VLRM G + LF+G + + ++IS K Sbjct: 2 RIPRIYHPEPLQINTTIALGDDAANHVGRVLRMTAGQKLELFDGSNQVFCAEISEATKKK 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S + + + ++++ IQKSVE+G+ I P+++ Sbjct: 62 VSVNIIDSHVDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDP 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P I P +LE D ++ S N+ Sbjct: 122 ERLEKKRQQWQKIAIAACEQCGRNRIPQIRPVQSLEAWCAEEDGAFKVNLHPRATQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + V +LIGPEGG EE + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----AELNKVRLLIGPEGGLSEEEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRLGD 241 >gi|148253212|ref|YP_001237797.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. BTAi1] gi|146405385|gb|ABQ33891.1| hypothetical protein BBta_1682 [Bradyrhizobium sp. BTAi1] Length = 250 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 105/237 (44%), Positives = 150/237 (63%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL+VD PL + DQ +YL +VLR+ G +L+FNG+DGEW I + Sbjct: 9 PRLYVDAPLQHGAHVELDRDQSNYLGNVLRLGAGGRVLVFNGRDGEWQGLIGGRKRPDSL 68 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +E+++R Q + +D+ Y+F+P+K RLDYM+QK+VEMG+ ++ PVITR+TQ + N +R+ Sbjct: 69 TIEHRTRPQDRLADLAYVFAPLKHARLDYMVQKAVEMGVSSLAPVITRHTQVSRVNGERM 128 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC IL+L + P +LE L + +VF DE + L+ L + Sbjct: 129 RANVIEAAEQCGILSLAEVREPVSLERFLAQRPPDRLLVFCDEAADVADPLQALRGGSDY 188 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +LIGPEGG+ SEE+E L P V ++LGPRILR+DTA VAA+AL+QA GDW Sbjct: 189 AGIDLLIGPEGGFASEERELLLRQPLVLRVALGPRILRADTAGVAALALIQATLGDW 245 >gi|300723910|ref|YP_003713221.1| hypothetical protein XNC1_3049 [Xenorhabdus nematophila ATCC 19061] gi|297630438|emb|CBJ91103.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 243 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R++ PL I+T+ S D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RTPRIYHPEPLSIETEIYLSDDAANHVGRVLRMSLGQELQLFDGSNQIFNAEITETSKKT 61 Query: 66 RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ + ++++ IQKSVE+G+ I P+++ Sbjct: 62 VKIRILNGKFSDHESPLNLHLGQVMSRGEKMEFTIQKSVELGVSTITPLLSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE K D + ++ S N+ Sbjct: 122 ERLEKKLQQWKKIAISACEQCGRNRIPEIRPVMSLEAWCKENDDSLKLNLHPRASQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LTL-----PVKKVRLLIGPEGGLSAEEIDMTAKYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|149375982|ref|ZP_01893748.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893] gi|149359619|gb|EDM48077.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893] Length = 244 Score = 279 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 126/247 (51%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ D PL + ++ VLRM+ G +LLFNG ++ + I+ GK Sbjct: 2 RIPRIYTDSPLSEGATAGLDDNAAQHVGRVLRMQPGQELLLFNGDGNDYPATITEAGKKH 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V S + T+ ++ + K +R+DY +QK+VEMG+ I P+ T Sbjct: 62 VSVEVGTPSANATESHLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERCDVKLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176 + ++ ISAAEQC +P I P TL +N D + ++V T S N Sbjct: 122 DREDKRLRHWQSVAISAAEQCGRARVPEIVPVMTLSEWFENSGDCDLRLVLHHRTEQSLN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L A VA++IGPEGG +E + F+ P++LGPR+LR++TA VAAMAL Sbjct: 182 TL------AKPTRVALMIGPEGGLSPDEITAAANAGFL-PVALGPRVLRTETAPVAAMAL 234 Query: 237 VQAICGD 243 Q + GD Sbjct: 235 CQWLWGD 241 >gi|312963582|ref|ZP_07778063.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6] gi|311282091|gb|EFQ60691.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6] Length = 239 Score = 279 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 117/248 (47%), Gaps = 19/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F D PL + + Q HY++ VLRM EGD + LF+G E+L + VGK Sbjct: 2 RLSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKK- 59 Query: 66 RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 R V+ + + R+D+ IQK+ E+G+ AI P+ + Sbjct: 60 RVTVQLTQHFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRLK 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + R ISA EQC T+P I+PP L LK + + ++V Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVLHP------- 172 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E + + A ++A LIGPEGG E ET + LGPR+LR++TA V A+A+ Sbjct: 173 VAEPMVSHAKPSSLAFLIGPEGGLTDNEVETAQGAGY-HAARLGPRVLRTETAPVVALAV 231 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 232 AQQLWGDF 239 >gi|84685244|ref|ZP_01013143.1| hypothetical protein 1099457000257_RB2654_10264 [Maritimibacter alkaliphilus HTCC2654] gi|84666976|gb|EAQ13447.1| hypothetical protein RB2654_10264 [Rhodobacterales bacterium HTCC2654] Length = 241 Score = 279 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 136/237 (57%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RLFVD L D+ HYL V+R GD + LFNG+DGEW ++++ GK Sbjct: 8 RLFVDESLREGQTIPLERDKAHYLFGVMRQAVGDRVALFNGRDGEWTAEVTLAGKRNGVL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+ Q D+ +F+PIK R D++++K+ EMG I PV+T +T + +DR+ Sbjct: 68 TCLGQAAPQLDPPDLWLMFAPIKKARTDFIVEKAAEMGASRIVPVLTEFTNSERVRVDRL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + P L+ LL WD +++F DE EN + L A Sbjct: 128 QAHAVEAAEQCGGTFVPEVAEPEKLDRLLDGWDGARRLMFCDEALAGEN--KPLSGAAGA 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E++ LH + +SLGPRILR+DTAAVAAM L Q+ GDW Sbjct: 186 P-WAILIGPEGGFSDAERKRLHGMESAVSVSLGPRILRADTAAVAAMTLWQSALGDW 241 >gi|152984501|ref|YP_001345914.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PA7] gi|150959659|gb|ABR81684.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 240 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R FVD PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFVDQPLALGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELIEVGKKN 60 Query: 65 IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +LP I+PP LE L+ D ++V Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPRIHPPLALEDWLRQRDDELRLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A ++A L+GPEGG E E + F + LGPR+LR++TA V A+A+ Sbjct: 176 --PLASHARPASLAFLVGPEGGLGDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|213971885|ref|ZP_03399986.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] gi|301385288|ref|ZP_07233706.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato Max13] gi|302061292|ref|ZP_07252833.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato K40] gi|302131396|ref|ZP_07257386.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923369|gb|EEB56963.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] Length = 239 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ + Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|283835293|ref|ZP_06355034.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220] gi|291068451|gb|EFE06560.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220] Length = 243 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL +Q D +++ VLRM G + LF+G + + ++I++ K Sbjct: 2 RIPRIYHPEPLTSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VDVKVLNVELDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|28872189|ref|NP_794808.1| hypothetical protein PSPTO_5076 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855443|gb|AAO58503.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato str. DC3000] Length = 239 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFSGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 +R ++ + Q + + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 61 VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|192360419|ref|YP_001980593.1| hypothetical protein CJA_0070 [Cellvibrio japonicus Ueda107] gi|190686584|gb|ACE84262.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus Ueda107] Length = 241 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + L + + H+L+ VLRM+ G ++LFNG GE+ + I + K Sbjct: 2 RIPRIYTNQTLLTGNKVQLEESASHHLSKVLRMQPGRELVLFNGAGGEFAATIDEISKRH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S +Q + + R ++++QK+ E+G+ I P++T T Sbjct: 62 VTASIAAHNPHNRESPLQLELAIGISRGERFEWVLQKATELGVTKITPLMTERTEVKVSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M+R + ISA EQC LP + P + LK D + V Sbjct: 122 ERQEKIMERWQHILISACEQCQRNLLPQLSAPVPITDWLKTVDAELRFVLHHRDS----- 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L A + A+LIGPEGG +E F L+LGPR+LR++TA +AA+++V Sbjct: 177 -QTLPADKKPHSAALLIGPEGGLSDDEIALAKQQEFA-ALTLGPRVLRTETAPIAAISVV 234 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 235 QYLWGDF 241 >gi|188534950|ref|YP_001908747.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99] gi|188029992|emb|CAO97876.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99] Length = 243 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + S + +++ VLRM G + LF+G D + ++I+ K Sbjct: 2 RIPRIYHPAPLDAGNEIALSEEAANHVGRVLRMGPGQRLELFDGTDLTFAAEITQADKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +R +++S + + + ++++ IQK+VE+G+ I P+ + Sbjct: 62 VHVRIHTARDDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P + TLE D ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRIPEVRQAMTLEAWCAEQDRGLKLNLHPRADHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEISMTARYGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|325273070|ref|ZP_08139378.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51] gi|324101804|gb|EGB99342.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51] Length = 239 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 113/247 (45%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + Q HY+ VLRM GD + LF+G E+ + VGK Sbjct: 2 RLSRFFIDAPLSLGEH-DLPEAQAHYVGRVLRMAPGDAVQLFDGSGQEYRGHLLEVGKKT 60 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q + + R+D+ IQK+ E+G AI P+I+ Sbjct: 61 VRVSLDQAFAGQADSPLHIHLGQGLSRGERMDWAIQKATELGANAITPIISERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC TLP I PPTTL L + ++V Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPAINPPTTLAEWLSSTHAELKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A +A LIGPEGG E E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHARPATLAFLIGPEGGLGDAEVEQAQRAGF-QAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|120555960|ref|YP_960311.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei VT8] gi|120325809|gb|ABM20124.1| 16S rRNA m(3)U-1498 methyltransferase [Marinobacter aquaeolei VT8] Length = 244 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F D PL + Q + + +++ VLRM+ G +LLFNG ++ + I+ GK Sbjct: 2 RIPRIFTDSPLAVGGQCQLDDNAANHVGRVLRMQAGQALLLFNGDGQDYHATITEAGKKH 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ V + ++T+ S V + K +R+DY +QK+VEMG+ I P+ T Sbjct: 62 VQVAVTEAAENETESSLRVVLAQTLSKGDRMDYAVQKAVEMGVSEIVPLTTERCDVKLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + + ISAAEQC +P I P T++ L++ + ++V T S N Sbjct: 122 DREDKRLRHWQQVAISAAEQCGRARVPEIQPVMTVQQWLEHARACDLRLVLHHRTERSLN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +LEK ++A++IGPEGG +EE F+ P++LGPR+LR++TA VAA+AL Sbjct: 182 TLEK------PSSIALMIGPEGGLTAEEIALAEDNGFL-PVALGPRVLRTETAPVAAIAL 234 Query: 237 VQAICGD 243 Q + GD Sbjct: 235 CQWLWGD 241 >gi|170765588|ref|ZP_02900399.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627] gi|170124734|gb|EDS93665.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627] Length = 243 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGRLDDHESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P +LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMSLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|301027303|ref|ZP_07190649.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1] gi|300395109|gb|EFJ78647.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1] Length = 255 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 14 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 74 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 133 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 134 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 193 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 194 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 247 Query: 238 QAICGD 243 Q GD Sbjct: 248 QVRFGD 253 >gi|28899384|ref|NP_798989.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus RIMD 2210633] gi|153839188|ref|ZP_01991855.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|260366255|ref|ZP_05778714.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus K5030] gi|260878928|ref|ZP_05891283.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AN-5034] gi|260898271|ref|ZP_05906767.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus Peru-466] gi|260903375|ref|ZP_05911770.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AQ4037] gi|28807620|dbj|BAC60873.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747290|gb|EDM58274.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|308085866|gb|EFO35561.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus Peru-466] gi|308090439|gb|EFO40134.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AN-5034] gi|308107481|gb|EFO45021.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus AQ4037] gi|308113508|gb|EFO51048.1| ribosomal RNA small subunit methyltransferase E [Vibrio parahaemolyticus K5030] Length = 243 Score = 278 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG +LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPETIHQLGTIALSEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKKN 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E + D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VLVDVTERVESNIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE + ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG SEE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|268593084|ref|ZP_06127305.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131] gi|291311353|gb|EFE51806.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131] Length = 243 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I T D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLQINTTISLGDDAANHVGRVLRMTAGQKLELFDGSNQTFSAEITEATKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 F S+ ++S + + + ++++ IQKSVE+G+ I P+++ Sbjct: 62 VFVHIENSQIDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P TLE D ++ S N+ Sbjct: 122 ERLEKKLLQWQKIAIAACEQCGRNRIPEIRPVQTLEAWCTENDGAFKVNLHPRATESINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPT-----ELKKVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRLGD 241 >gi|90020116|ref|YP_525943.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus degradans 2-40] gi|89949716|gb|ABD79731.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus degradans 2-40] Length = 241 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+++D P+ G HYL VLRM+ G ++LFNGK GE+ + I GK Sbjct: 2 RIPRIYIDKPITANANLDLDGPTAHYLLKVLRMESGRELILFNGKGGEYSAVIESAGKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 F + ++ +S +Q + +R+D+++QK+ E+G+ I P+ + Sbjct: 62 VFCKVGKHNTRESESSLQTELAIGISRGDRMDWVLQKATELGVSRIIPLFADRSEVKLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M + ISA EQC TLP + P L+ L + + V T Sbjct: 122 ERLEKKMQHWQQILISACEQCTRNTLPTLLPACPLDEYLASTQAEQKFVLHHRTH----- 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL I + A+LIGPEGG E + F L+LGPRILR++TA +AA++++ Sbjct: 177 -KKLRDITKPKSAALLIGPEGGLTDNEIQNAERKGF-NALALGPRILRTETAPIAALSIL 234 Query: 238 QAICGD 243 Q + GD Sbjct: 235 QFVWGD 240 >gi|197284242|ref|YP_002150114.1| hypothetical protein PMI0341 [Proteus mirabilis HI4320] gi|227357855|ref|ZP_03842203.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC 29906] gi|194681729|emb|CAR40885.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227161965|gb|EEI46983.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC 29906] Length = 243 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL TQ + + +++ VLRM +G + LF+G + + + I K Sbjct: 2 RIPRIYHPEPLSAGTQTSLAEEAANHVGRVLRMSKGQKLALFDGSNQVFDADIIESSKKS 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q + D+ + ++++ IQKSVE+G+ I P+I+ Sbjct: 62 VIVQINEGQMDDRESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDP 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P + P +LE D + ++ S N+ Sbjct: 122 SRLEKKHQQWQKIIISACEQCGRNKIPQLMPVMSLEAWCAQTDDSLKLNLHPRASQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVKKVRLLIGPEGGLSPEEIAMTAKYHF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|254230223|ref|ZP_04923615.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262393236|ref|YP_003285090.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25] gi|151937255|gb|EDN56121.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262336830|gb|ACY50625.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25] Length = 243 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG ++LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPETIHQLGSLALSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKKT 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE K ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRANYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG SEE E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|324005502|gb|EGB74721.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 57-2] Length = 261 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 20 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 79 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 80 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 139 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 140 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 199 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 200 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 253 Query: 238 QAICGD 243 Q GD Sbjct: 254 QVRFGD 259 >gi|300995473|ref|ZP_07181121.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1] gi|300304835|gb|EFJ59355.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1] Length = 254 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 13 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 72 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 73 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 132 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 133 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 192 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 193 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 246 Query: 238 QAICGD 243 Q GD Sbjct: 247 QVRFGD 252 >gi|89070197|ref|ZP_01157525.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516] gi|89044213|gb|EAR50364.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516] Length = 237 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 95/237 (40%), Positives = 138/237 (58%), Gaps = 5/237 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL +Q HYL V+R+ EG +LLFNG+DGEW ++++ GK Sbjct: 5 RLYVDHPLGAGQTVPLIREQAHYLFGVMRLGEGAEVLLFNGRDGEWSARVAEAGKRGGTL 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+R D+ +F+P+K R D++++K+VEMG + PV T +T + DR+ Sbjct: 65 ACAAQTRPLAPPPDLWLLFAPVKKARTDFIVEKAVEMGAARLCPVQTEFTNSERIRRDRL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC T+P + L+ LL WD + +I+ DET +++ A Sbjct: 125 QAHAVEAAEQCGATTVPEVADLARLDRLLDGWDPSRRIMLCDETRAGDDAALP----AEP 180 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L +LPF P++LGPRILR+DTAAVAA+ L Q GDW Sbjct: 181 GPWAILIGPEGGFSDAERARLAALPFTRPVALGPRILRADTAAVAALTLWQTQLGDW 237 >gi|194431744|ref|ZP_03064035.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012] gi|194420100|gb|EDX36178.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012] gi|320181049|gb|EFW55970.1| Ribosomal RNA small subunit methyltransferase E [Shigella boydii ATCC 9905] gi|332086875|gb|EGI92011.1| RNA methyltransferase family protein [Shigella boydii 5216-82] gi|332087723|gb|EGI92850.1| RNA methyltransferase family protein [Shigella dysenteriae 155-74] Length = 243 Score = 277 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VKVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEHDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|330878069|gb|EGH12218.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 239 Score = 277 bits (711), Expect = 6e-73, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQLTECFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K D + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTDADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHARPASLAFLIGPEGGLNDAEVHQAQTAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|212709359|ref|ZP_03317487.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM 30120] gi|212688271|gb|EEB47799.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM 30120] Length = 243 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I T D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RVPRIYHPEPLQINTTISLCDDAANHVGRVLRMTAGQQLELFDGSNHIFNAEITEATKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 F S ++S + + + ++++ IQKSVE+G+ I P+++ Sbjct: 62 VFVRVLNSTLDDRESPLDIHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P +LE D +I S N+ Sbjct: 122 ERLEKKLQQWQKIAIAACEQSGRNRIPVIRPVQSLEAWCAENDGAFKINLHPRASESINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + +V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----ADLKHVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRLGD 241 >gi|194436810|ref|ZP_03068910.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1] gi|194424292|gb|EDX40279.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1] Length = 243 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PIERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|114705941|ref|ZP_01438844.1| surface protein [Fulvimarina pelagi HTCC2506] gi|114538787|gb|EAU41908.1| surface protein [Fulvimarina pelagi HTCC2506] Length = 295 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 2/238 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV+ + T A+ Q +YL +VLR EGD++LLFNG+DGEW +++ K + Sbjct: 55 PRLFVEERITADTPIAATSPQANYLLNVLRKDEGDSVLLFNGQDGEWRAELRKASKKKLD 114 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + R Q D+ Y F+P+K RLDYM+QK+VEMG G ++PV+T TQN D+ Sbjct: 115 LFPVAKVRVQQPPYDLIYCFAPLKVGRLDYMVQKAVEMGAGILQPVLTHRTQNHRVRTDK 174 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC IL +P P + LL NW + +VF DE + + ++ L + Sbjct: 175 IRANAIEAAEQCGILAIPECREPVKFDDLLSNWSSSIPLVFCDEKMDAASPIDALRELGD 234 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++IGPEGG+ +E+ +L F T +SLGPRILR+DTAAVAA+ +VQA+CGDW Sbjct: 235 GRK-GLIIGPEGGFSQDERVSLLGAEFTTAISLGPRILRADTAAVAALTMVQAVCGDW 291 >gi|237808014|ref|YP_002892454.1| hypothetical protein Tola_1251 [Tolumonas auensis DSM 9187] gi|237500275|gb|ACQ92868.1| protein of unknown function DUF558 [Tolumonas auensis DSM 9187] Length = 243 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ + PL + D +++ VLRM I LFNG+ G++ + I+ GK Sbjct: 2 RVPRIYQNSPLNVGASVSLDDDAANHVGRVLRMVPDQEICLFNGQGGQYQAVITESGKKH 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + K+ ++ + S + + +++++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKITDFSAHSVESPLSIHLGQVISRGDKMEFTIQKSVELGVNVITPLWSSRCGVKLQG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +++ + ISA EQC ++P I P +LE L ++ S + Sbjct: 122 DRLDKKLEQWQKIAISACEQCGRNSVPLIRPVMSLENWLAEPTDELKLTLHPRAQYSVGT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V ++IGPEGG +E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PTHGVRLVIGPEGGLSDDEIALTEQYNFQEML-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QCRFGD 241 >gi|188496461|ref|ZP_03003731.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638] gi|218701656|ref|YP_002409285.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI39] gi|254162856|ref|YP_003045964.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli B str. REL606] gi|301027729|ref|ZP_07191039.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1] gi|331684573|ref|ZP_08385165.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299] gi|188491660|gb|EDU66763.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638] gi|218371642|emb|CAR19481.1| conserved hypothetical protein [Escherichia coli IAI39] gi|242378472|emb|CAQ33256.1| 16S rRNA m[3]U1498 methyltransferase monomer, subunit of 16S rRNA m[3]U1498 methyltransferase [Escherichia coli BL21(DE3)] gi|253974757|gb|ACT40428.1| hypothetical protein ECB_02776 [Escherichia coli B str. REL606] gi|253978923|gb|ACT44593.1| hypothetical protein ECD_02776 [Escherichia coli BL21(DE3)] gi|299879165|gb|EFI87376.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1] gi|309703301|emb|CBJ02637.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|323936051|gb|EGB32346.1| RsmE family protein RNA methyltransferase [Escherichia coli E1520] gi|323966463|gb|EGB61896.1| RsmE family protein RNA methyltransferase [Escherichia coli M863] gi|323971707|gb|EGB66935.1| RsmE family protein RNA methyltransferase [Escherichia coli TA007] gi|323978759|gb|EGB73840.1| RsmE family protein RNA methyltransferase [Escherichia coli TW10509] gi|327251714|gb|EGE63400.1| RNA methyltransferase family protein [Escherichia coli STEC_7v] gi|331078188|gb|EGI49394.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299] gi|332344845|gb|AEE58179.1| RNA methyltransferase [Escherichia coli UMNK88] Length = 243 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|260599273|ref|YP_003211844.1| ribosomal RNA small subunit methyltransferase E [Cronobacter turicensis z3032] gi|260218450|emb|CBA33577.1| Ribosomal RNA small subunit methyltransferase E [Cronobacter turicensis z3032] Length = 243 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + ++ D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLVVGSEIALDEDAANHVGRVLRMSAGQALQLFDGSNQVFAAEITQANKKS 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V + ++ + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VLVNVVSAEEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMDLEAWCAEPDTGLKLNLHPRAAHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|30064262|ref|NP_838433.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str. 2457T] gi|38704129|ref|NP_311849.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. Sakai] gi|56480218|ref|NP_708711.2| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str. 301] gi|89109723|ref|AP_003503.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|90111515|ref|NP_417421.4| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|110643095|ref|YP_670825.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 536] gi|110806854|ref|YP_690374.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 5 str. 8401] gi|117625173|ref|YP_854161.1| hypothetical protein APECO1_3575 [Escherichia coli APEC O1] gi|157156709|ref|YP_001464298.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli E24377A] gi|157162405|ref|YP_001459723.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli HS] gi|161367531|ref|NP_289518.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 EDL933] gi|161486126|ref|NP_755407.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli CFT073] gi|162138377|ref|YP_542314.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UTI89] gi|168747562|ref|ZP_02772584.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4113] gi|168753898|ref|ZP_02778905.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4401] gi|168760088|ref|ZP_02785095.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4501] gi|168766953|ref|ZP_02791960.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4486] gi|168773415|ref|ZP_02798422.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4196] gi|168781805|ref|ZP_02806812.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4076] gi|168785804|ref|ZP_02810811.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC869] gi|168797521|ref|ZP_02822528.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC508] gi|170018813|ref|YP_001723767.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ATCC 8739] gi|170082498|ref|YP_001731818.1| hypothetical protein ECDH10B_3121 [Escherichia coli str. K-12 substr. DH10B] gi|191171800|ref|ZP_03033346.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11] gi|195937084|ref|ZP_03082466.1| 16S rRNA m3U1498 methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208807472|ref|ZP_03249809.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4206] gi|208813470|ref|ZP_03254799.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4045] gi|208818613|ref|ZP_03258933.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4042] gi|209396394|ref|YP_002272426.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4115] gi|217326972|ref|ZP_03443055.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. TW14588] gi|218555505|ref|YP_002388418.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI1] gi|218559937|ref|YP_002392850.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli S88] gi|218691070|ref|YP_002399282.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ED1a] gi|218706461|ref|YP_002413980.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UMN026] gi|238902068|ref|YP_002927864.1| hypothetical protein BWG_2668 [Escherichia coli BW2952] gi|253772216|ref|YP_003035047.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254794898|ref|YP_003079735.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. TW14359] gi|256024545|ref|ZP_05438410.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia sp. 4_1_40B] gi|261226258|ref|ZP_05940539.1| hypothetical protein EscherichiacoliO157_16928 [Escherichia coli O157:H7 str. FRIK2000] gi|261256484|ref|ZP_05949017.1| hypothetical protein EscherichiacoliO157EcO_11691 [Escherichia coli O157:H7 str. FRIK966] gi|291284267|ref|YP_003501085.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str. CB9615] gi|293406453|ref|ZP_06650379.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1412] gi|293412306|ref|ZP_06655029.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B354] gi|293416207|ref|ZP_06658847.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B185] gi|298382190|ref|ZP_06991787.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1302] gi|300947676|ref|ZP_07161845.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1] gi|306812150|ref|ZP_07446348.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101] gi|307139631|ref|ZP_07498987.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli H736] gi|312964791|ref|ZP_07779031.1| RNA methyltransferase family protein [Escherichia coli 2362-75] gi|331664529|ref|ZP_08365435.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143] gi|84027952|sp|P0AGL8|RSME_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|84027953|sp|P0AGL7|RSME_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|84027954|sp|P0AGL9|RSME_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|30042519|gb|AAP18243.1| hypothetical protein S3141 [Shigella flexneri 2a str. 2457T] gi|56383769|gb|AAN44418.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|85675756|dbj|BAE77009.1| hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|87082186|gb|AAC75983.2| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|110344687|gb|ABG70924.1| hypothetical protein YggJ [Escherichia coli 536] gi|110616402|gb|ABF05069.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115514297|gb|ABJ02372.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157068085|gb|ABV07340.1| conserved hypothetical protein TIGR00046 [Escherichia coli HS] gi|157078739|gb|ABV18447.1| conserved hypothetical protein TIGR00046 [Escherichia coli E24377A] gi|169753741|gb|ACA76440.1| protein of unknown function DUF558 [Escherichia coli ATCC 8739] gi|169890333|gb|ACB04040.1| predicted protein [Escherichia coli str. K-12 substr. DH10B] gi|187770823|gb|EDU34667.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4196] gi|188017770|gb|EDU55892.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4113] gi|189000650|gb|EDU69636.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4076] gi|189358446|gb|EDU76865.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4401] gi|189363856|gb|EDU82275.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4486] gi|189369285|gb|EDU87701.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4501] gi|189373969|gb|EDU92385.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC869] gi|189379845|gb|EDU98261.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC508] gi|190907835|gb|EDV67428.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11] gi|208727273|gb|EDZ76874.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4206] gi|208734747|gb|EDZ83434.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4045] gi|208738736|gb|EDZ86418.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4042] gi|209157794|gb|ACI35227.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. EC4115] gi|217319339|gb|EEC27764.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str. TW14588] gi|218362273|emb|CAQ99894.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218366706|emb|CAR04463.1| conserved hypothetical protein [Escherichia coli S88] gi|218428634|emb|CAR09563.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218433558|emb|CAR14461.1| conserved hypothetical protein [Escherichia coli UMN026] gi|238863019|gb|ACR65017.1| predicted protein [Escherichia coli BW2952] gi|253323260|gb|ACT27862.1| protein of unknown function DUF558 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254594298|gb|ACT73659.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|260448011|gb|ACX38433.1| protein of unknown function DUF558 [Escherichia coli DH1] gi|284922889|emb|CBG35978.1| conserved hypothetical protein [Escherichia coli 042] gi|290764140|gb|ADD58101.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str. CB9615] gi|291426459|gb|EFE99491.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1412] gi|291432396|gb|EFF05378.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B185] gi|291469077|gb|EFF11568.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B354] gi|294490749|gb|ADE89505.1| conserved hypothetical protein TIGR00046 [Escherichia coli IHE3034] gi|298277330|gb|EFI18846.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli FVEC1302] gi|300452722|gb|EFK16342.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1] gi|305854188|gb|EFM54626.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101] gi|307554928|gb|ADN47703.1| 16S rRNA methyltransferase RsmE [Escherichia coli ABU 83972] gi|307625480|gb|ADN69784.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UM146] gi|312290347|gb|EFR18227.1| RNA methyltransferase family protein [Escherichia coli 2362-75] gi|313647996|gb|EFS12442.1| RNA methyltransferase family protein [Shigella flexneri 2a str. 2457T] gi|315137543|dbj|BAJ44702.1| hypothetical protein ECDH1ME8569_2846 [Escherichia coli DH1] gi|315614893|gb|EFU95531.1| RNA methyltransferase family protein [Escherichia coli 3431] gi|320189294|gb|EFW63953.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli O157:H7 str. EC1212] gi|320195065|gb|EFW69694.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli WV_060327] gi|320640592|gb|EFX10131.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. G5101] gi|320656635|gb|EFX24531.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662154|gb|EFX29555.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7 str. USDA 5905] gi|320667230|gb|EFX34193.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7 str. LSU-61] gi|323188660|gb|EFZ73945.1| RNA methyltransferase family protein [Escherichia coli RN587/1] gi|323941968|gb|EGB38147.1| RsmE family protein RNA methyltransferase [Escherichia coli E482] gi|323951616|gb|EGB47491.1| RsmE family protein RNA methyltransferase [Escherichia coli H252] gi|323957330|gb|EGB53052.1| RsmE family protein RNA methyltransferase [Escherichia coli H263] gi|323960761|gb|EGB56382.1| RsmE family protein RNA methyltransferase [Escherichia coli H489] gi|324115039|gb|EGC09004.1| RsmE family protein RNA methyltransferase [Escherichia fergusonii B253] gi|325498503|gb|EGC96362.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii ECD227] gi|326338967|gb|EGD62782.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli O157:H7 str. 1044] gi|326343152|gb|EGD66920.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli O157:H7 str. 1125] gi|330908981|gb|EGH37495.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli AA86] gi|331058460|gb|EGI30441.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143] gi|332752989|gb|EGJ83373.1| RNA methyltransferase family protein [Shigella flexneri 4343-70] gi|332765363|gb|EGJ95581.1| ribosomal RNA small subunit methyltransferase E [Shigella flexneri 2930-71] gi|332999693|gb|EGK19278.1| RNA methyltransferase family protein [Shigella flexneri VA-6] gi|333000409|gb|EGK19992.1| RNA methyltransferase family protein [Shigella flexneri K-218] gi|333000605|gb|EGK20183.1| RNA methyltransferase family protein [Shigella flexneri K-272] gi|333015165|gb|EGK34508.1| RNA methyltransferase family protein [Shigella flexneri K-304] gi|333015286|gb|EGK34628.1| RNA methyltransferase family protein [Shigella flexneri K-227] Length = 243 Score = 277 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|161950046|ref|YP_404631.2| 16S ribosomal RNA methyltransferase RsmE [Shigella dysenteriae Sd197] gi|309785226|ref|ZP_07679857.1| RNA methyltransferase family protein [Shigella dysenteriae 1617] gi|308926346|gb|EFP71822.1| RNA methyltransferase family protein [Shigella dysenteriae 1617] Length = 243 Score = 277 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ ++ Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|84499775|ref|ZP_00998063.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597] gi|84392919|gb|EAQ05130.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597] Length = 241 Score = 277 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD L + DQ HYL V+RM GD + LFNG+ GEW +++ GK Sbjct: 7 RLYVDHALGEGQTVPLARDQAHYLFGVMRMGVGDAVALFNGRAGEWRAEVVEAGKRAGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + QS Q D+ F+PIK R D++++K+ EMG I PV T +T + +DR+ Sbjct: 67 ECVGQSAPQMDPPDLWLAFAPIKKARTDFIVEKATEMGARRILPVQTDFTNSERVRIDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + P L LL W Q++F DE + + A Sbjct: 127 QAHCVEAAEQCGGTFVPEVAEPVKLGTLLSGWPEGRQLMFCDEALAGGPAALPTRSDAP- 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L + P++LGPR+LR+DTAAVAA+ L Q GDW Sbjct: 186 --WAILIGPEGGFSEAERARLRGMDQAHPVALGPRVLRADTAAVAALTLWQDRLGDW 240 >gi|229593101|ref|YP_002875220.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens SBW25] gi|229364967|emb|CAY53089.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 239 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F D PL + + Q HY++ VLRM EGD + LF+G E+L + VGK Sbjct: 2 RLSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGSLLEVGKKR 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E + + + R+D+ IQK+ E+G+ AI P+ + Sbjct: 61 VTVQLTESVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC T+P I+PP L LK + + ++V Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSTVPLIHPPLLLADWLKQTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + + A ++A LIGPEGG E + + LGPR+LR++TA V A+A+ Sbjct: 174 AEPMVSHAKPSSLAFLIGPEGGLTDAEVQAAQGAGY-HAARLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|215488244|ref|YP_002330675.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O127:H6 str. E2348/69] gi|215266316|emb|CAS10747.1| 16S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69] Length = 243 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVISRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|281179955|dbj|BAI56285.1| conserved hypothetical protein [Escherichia coli SE15] Length = 243 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQVLQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPVMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|300940772|ref|ZP_07155318.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1] gi|300454472|gb|EFK17965.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1] Length = 253 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 12 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 71 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 72 VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 131 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 132 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 191 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 192 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 245 Query: 238 QAICGD 243 Q GD Sbjct: 246 QVRFGD 251 >gi|330964692|gb|EGH64952.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 239 Score = 277 bits (710), Expect = 8e-73, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 +R ++ Q + + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 61 VRVQLNKCFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ISA EQC +P I+PP TL +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMTLADWIKLTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPVSLAFLIGPEGGLNDAEVDQAQTAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|218550193|ref|YP_002383984.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii ATCC 35469] gi|218357734|emb|CAQ90378.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 243 Score = 277 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPDPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|315295635|gb|EFU54958.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 16-3] Length = 253 Score = 277 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 12 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 71 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 72 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 131 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 132 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 191 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 192 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 245 Query: 238 QAICGD 243 Q GD Sbjct: 246 QVRFGD 251 >gi|269101820|ref|ZP_06154517.1| ribosomal RNA small subunit methyltransferase E [Photobacterium damselae subsp. damselae CIP 102761] gi|268161718|gb|EEZ40214.1| ribosomal RNA small subunit methyltransferase E [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + S D +++ V+RM+ G I+LF+G + E+ + I+ K Sbjct: 2 RIPRIYHPESLPSQGSVMLSDDAANHVGRVMRMQAGQEIMLFDGSNAEFPAIITNASKK- 60 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +VE Q R + ++ + ++++ IQKSVE+G+ I P+I+ Sbjct: 61 NVEVEIQQRVECSIESPLNIHLGQVVSRGEKMEFTIQKSVELGVNTITPLISERCGVKLN 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQ +P I P LE ++ S N Sbjct: 121 GERFDKKLAQWQKIAIAACEQSGRNVVPEIRPIMKLEDWCAEEFSGLKLNLHPRAKYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + +V +LIGPEGG S+E + + F + LGPR+LR++TAA+ A+ Sbjct: 181 TLPT-----PVTDVRLLIGPEGGLSSDEIDMTENYNFDE-ILLGPRVLRTETAAMTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|237706401|ref|ZP_04536882.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|254037995|ref|ZP_04872053.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|331643639|ref|ZP_08344770.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736] gi|331648701|ref|ZP_08349789.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605] gi|331654458|ref|ZP_08355458.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718] gi|331674427|ref|ZP_08375187.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280] gi|12517492|gb|AAG58077.1|AE005525_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26109775|gb|AAN81980.1|AE016766_68 Hypothetical protein yggJ [Escherichia coli CFT073] gi|882475|gb|AAA69113.1| ORF_o252 [Escherichia coli str. K-12 substr. MG1655] gi|13363294|dbj|BAB37245.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|91073902|gb|ABE08783.1| hypothetical protein UTI89_C3335 [Escherichia coli UTI89] gi|209760100|gb|ACI78362.1| hypothetical protein ECs3822 [Escherichia coli] gi|209760102|gb|ACI78363.1| hypothetical protein ECs3822 [Escherichia coli] gi|209760104|gb|ACI78364.1| hypothetical protein ECs3822 [Escherichia coli] gi|209760106|gb|ACI78365.1| hypothetical protein ECs3822 [Escherichia coli] gi|226839619|gb|EEH71640.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|226899441|gb|EEH85700.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|281602283|gb|ADA75267.1| hypothetical protein SFxv_3218 [Shigella flexneri 2002017] gi|331037110|gb|EGI09334.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736] gi|331042448|gb|EGI14590.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605] gi|331047840|gb|EGI19917.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718] gi|331068521|gb|EGI39916.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280] Length = 252 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 71 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244 Query: 238 QAICGD 243 Q GD Sbjct: 245 QVRFGD 250 >gi|262273734|ref|ZP_06051547.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae CIP 101886] gi|262222149|gb|EEY73461.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae CIP 101886] Length = 243 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F PL + S D +++ VLRM+ G +LLF+G E+ + I+ GK Sbjct: 2 RIPRIFHPEPLPDTGRVALSDDAANHVGRVLRMQAGQEVLLFDGSGAEFPAVIAESGKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + V E RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VTVDVAERVERSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNVITPLISERCGVKLNA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+A EQC +P + P +L+ ++ ++ S N+ Sbjct: 122 DRFDKKWQQWQKIAIAACEQCGRNIVPEVRPVMSLDAWMQEPFDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + + +LIGPEGG SEE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVSRLRLLIGPEGGLSSEEIARTRKFGFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|81242430|gb|ABB63140.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 252 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ ++ Sbjct: 71 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLDS 130 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244 Query: 238 QAICGD 243 Q GD Sbjct: 245 QVRFGD 250 >gi|258620733|ref|ZP_05715768.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258586931|gb|EEW11645.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 243 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPSEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|170682172|ref|YP_001745107.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SMS-3-5] gi|170519890|gb|ACB18068.1| 16S rRNA methyltransferase RsmE [Escherichia coli SMS-3-5] Length = 243 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNRVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|320645839|gb|EFX14824.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H- str. 493-89] gi|320651139|gb|EFX19579.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H- str. H 2687] Length = 243 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKLLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|330812331|ref|YP_004356793.1| RNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380439|gb|AEA71789.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 239 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + + + HY+ VLRM EGD + +F+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLSLGDH-ELPEAKAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKR 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R +++ Q Q + + + R+D+ IQK+ E+G+ I P+ + Sbjct: 61 VRVQLDEQFAGQPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC ++P I+PP L LK + ++V Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAELRLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + +A LIGPEGG E E + + LGPR+LR++TA V A+A+ Sbjct: 174 AEPLVSHDKPSTLAFLIGPEGGLSDAEVEQAKTAGY-HAARLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|237729877|ref|ZP_04560358.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908483|gb|EEH94401.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 243 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ +Q D +++ VLRM G + LF+G + + ++I++ K Sbjct: 2 RIPRIYHPEPITSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VDVKVLNAELDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|161984861|ref|YP_409378.2| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii Sb227] gi|187732729|ref|YP_001881719.1| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii CDC 3083-94] gi|191167926|ref|ZP_03029729.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A] gi|193063533|ref|ZP_03044622.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22] gi|193067437|ref|ZP_03048405.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019] gi|194426231|ref|ZP_03058786.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171] gi|209920405|ref|YP_002294489.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SE11] gi|218696544|ref|YP_002404211.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 55989] gi|256019252|ref|ZP_05433117.1| 16S ribosomal RNA methyltransferase RsmE [Shigella sp. D9] gi|260845616|ref|YP_003223394.1| hypothetical protein ECO103_3526 [Escherichia coli O103:H2 str. 12009] gi|260857079|ref|YP_003230970.1| hypothetical protein ECO26_4045 [Escherichia coli O26:H11 str. 11368] gi|260869633|ref|YP_003236035.1| hypothetical protein ECO111_3694 [Escherichia coli O111:H- str. 11128] gi|293449276|ref|ZP_06663697.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B088] gi|300824847|ref|ZP_07104950.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7] gi|301306391|ref|ZP_07212460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1] gi|301327362|ref|ZP_07220612.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1] gi|307310433|ref|ZP_07590081.1| protein of unknown function DUF558 [Escherichia coli W] gi|309794035|ref|ZP_07688460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7] gi|331669689|ref|ZP_08370535.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271] gi|187429721|gb|ACD08995.1| 16S rRNA methyltransferase RsmE [Shigella boydii CDC 3083-94] gi|190902011|gb|EDV61757.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A] gi|192930810|gb|EDV83415.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22] gi|192959394|gb|EDV89829.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019] gi|194415539|gb|EDX31806.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171] gi|209913664|dbj|BAG78738.1| conserved hypothetical protein [Escherichia coli SE11] gi|218353276|emb|CAU99232.1| conserved hypothetical protein [Escherichia coli 55989] gi|257755728|dbj|BAI27230.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257760763|dbj|BAI32260.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257765989|dbj|BAI37484.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|291322366|gb|EFE61795.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli B088] gi|300522685|gb|EFK43754.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7] gi|300838386|gb|EFK66146.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1] gi|300846046|gb|EFK73806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1] gi|306909328|gb|EFN39823.1| protein of unknown function DUF558 [Escherichia coli W] gi|308122442|gb|EFO59704.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7] gi|315062252|gb|ADT76579.1| 16S rRNA methyltransferase [Escherichia coli W] gi|315256838|gb|EFU36806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 85-1] gi|320174058|gb|EFW49228.1| Ribosomal RNA small subunit methyltransferase E [Shigella dysenteriae CDC 74-1112] gi|320184293|gb|EFW59105.1| Ribosomal RNA small subunit methyltransferase E [Shigella flexneri CDC 796-83] gi|320202610|gb|EFW77180.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli EC4100B] gi|323168002|gb|EFZ53691.1| RNA methyltransferase family protein [Shigella sonnei 53G] gi|323180406|gb|EFZ65958.1| RNA methyltransferase family protein [Escherichia coli 1180] gi|323183517|gb|EFZ68914.1| RNA methyltransferase family protein [Escherichia coli 1357] gi|323377164|gb|ADX49432.1| protein of unknown function DUF558 [Escherichia coli KO11] gi|323946556|gb|EGB42579.1| RsmE family protein RNA methyltransferase [Escherichia coli H120] gi|324119741|gb|EGC13621.1| RsmE family protein RNA methyltransferase [Escherichia coli E1167] gi|331063357|gb|EGI35270.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271] gi|332091330|gb|EGI96418.1| RNA methyltransferase family protein [Shigella boydii 3594-74] Length = 243 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|327482639|gb|AEA85949.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM 4166] Length = 238 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 20/248 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F+D PL + HY+ VLR+ G + LF+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLSLGQHA-LPEASAHYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKK- 59 Query: 66 RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 VE R + + R+D+ IQK+ E+G+ I P+I+ Sbjct: 60 SVSVELHERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCEVRLN 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + R ISA EQC LP I+ P TL L + + + ++V Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWL-DVEADLKLVLHP------- 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + A ++A LIGPEGG E E F+ P LGPR+LR++TA V A+++ Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDNEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 231 AQQLWGDF 238 >gi|160873963|ref|YP_001553279.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS195] gi|160859485|gb|ABX48019.1| protein of unknown function DUF558 [Shewanella baltica OS195] gi|315266197|gb|ADT93050.1| protein of unknown function DUF558 [Shewanella baltica OS678] Length = 243 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + +S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKLLSCEANSSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ +P + P L ++ N Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|238787363|ref|ZP_04631162.1| Ribosomal RNA small subunit methyltransferase E [Yersinia frederiksenii ATCC 33641] gi|238724625|gb|EEQ16266.1| Ribosomal RNA small subunit methyltransferase E [Yersinia frederiksenii ATCC 33641] Length = 243 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELTLSDEAANHVGRVLRMGEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + ++S + + + ++++ +QKS+E+G+ I P+ + Sbjct: 62 LTVRLAEGQPEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC T+P I L D + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNTVPEIREAMQLSDWCAEQDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|209760098|gb|ACI78361.1| hypothetical protein ECs3822 [Escherichia coli] Length = 252 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 71 VEVKLLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244 Query: 238 QAICGD 243 Q GD Sbjct: 245 QVRFGD 250 >gi|121728575|ref|ZP_01681596.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674458|ref|YP_001215995.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O395] gi|229519855|ref|ZP_04409289.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM 11079-80] gi|229530311|ref|ZP_04419699.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae 12129(1)] gi|254291180|ref|ZP_04961976.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|261210046|ref|ZP_05924344.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341] gi|262167137|ref|ZP_06034851.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC27] gi|121629131|gb|EAX61574.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316341|gb|ABQ20880.1| conserved hypothetical protein [Vibrio cholerae O395] gi|150422874|gb|EDN14825.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227012322|gb|ACP08532.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229332084|gb|EEN97572.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae 12129(1)] gi|229343143|gb|EEO08127.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM 11079-80] gi|260840811|gb|EEX67353.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341] gi|262024437|gb|EEY43124.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC27] gi|327483322|gb|AEA77729.1| Ribosomal RNA small subunit methyltransferase E [Vibrio cholerae LMA3894-4] Length = 243 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|325292039|ref|YP_004277903.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3] gi|325059892|gb|ADY63583.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3] Length = 261 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV+ PL +A+ +Q++YLA+VLRM +G ILLFNG+DGEW +++S+ Sbjct: 17 MRANFRMQRLFVETPLVAGAAQEATTEQFNYLANVLRMTDGAEILLFNGRDGEWKARLSF 76 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q+R Q SD+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 77 PSRKKITLIPLEQTRPQPSASDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 136 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +N +++R I AAEQC IL+LP + P L+ +L+ W + +I++ DE +N L Sbjct: 137 KIHNTEKLRANAIEAAEQCGILSLPDVAEPVKLKDMLETWPRDRRIIYCDEGDAGQNPLP 196 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L +I +A+L+GPEGG+ EE+E L SL FVTP+ LGPRILR Sbjct: 197 VLQSIKE-RKIALLVGPEGGFSEEERELLRSLAFVTPIPLGPRILR 241 >gi|331678938|ref|ZP_08379612.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591] gi|332280360|ref|ZP_08392773.1| conserved hypothetical protein [Shigella sp. D9] gi|81246842|gb|ABB67550.1| conserved hypothetical protein [Shigella boydii Sb227] gi|331073768|gb|EGI45089.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591] gi|332102712|gb|EGJ06058.1| conserved hypothetical protein [Shigella sp. D9] Length = 252 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 11 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 71 VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244 Query: 238 QAICGD 243 Q GD Sbjct: 245 QVRFGD 250 >gi|217972024|ref|YP_002356775.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS223] gi|217497159|gb|ACK45352.1| protein of unknown function DUF558 [Shewanella baltica OS223] Length = 243 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F PL I Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 2 RVPRIFQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKLLSCEVNLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + +SA EQ +P + P L ++ N Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|121590723|ref|ZP_01678055.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153819149|ref|ZP_01971816.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|227080679|ref|YP_002809230.1| hypothetical protein VCM66_0454 [Vibrio cholerae M66-2] gi|229507107|ref|ZP_04396613.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX 330286] gi|298501000|ref|ZP_07010801.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|121547454|gb|EAX57563.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126510294|gb|EAZ72888.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|227008567|gb|ACP04779.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229355852|gb|EEO20772.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX 330286] gi|297540248|gb|EFH76308.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 243 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|157085700|gb|ABV15378.1| hypothetical protein CKO_04321 [Citrobacter koseri ATCC BAA-895] Length = 254 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ P+ +Q D +++ VLRM G + LF+G + + ++I+ K Sbjct: 13 RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 72 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + + + + ++++ IQKS+E+G+ I P+ + Sbjct: 73 VDVKVLSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 132 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 133 ERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 192 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 193 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 246 Query: 238 QAICGD 243 Q GD Sbjct: 247 QVRFGD 252 >gi|153802600|ref|ZP_01957186.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124121863|gb|EAY40606.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 243 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKK 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|300921287|ref|ZP_07137656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1] gi|300411749|gb|EFJ95059.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1] Length = 255 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 14 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 74 VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 133 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 134 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMVLEAWCAEQDEGLKLNLHPRASNSINT 193 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 194 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 247 Query: 238 QAICGD 243 Q GD Sbjct: 248 QVRFGD 253 >gi|258625617|ref|ZP_05720499.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|262172417|ref|ZP_06040095.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus MB-451] gi|258582119|gb|EEW06986.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|261893493|gb|EEY39479.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus MB-451] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|153216268|ref|ZP_01950361.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124114357|gb|EAY33177.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQTGQEVLLFDGLGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|156932614|ref|YP_001436530.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894] gi|156530868|gb|ABU75694.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 14/249 (5%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + + R++ PL + + D +++ VLRM G + LF+G + + ++I+ Sbjct: 1 MSMRIPRIYHPEPLVVGREIALDEDAANHVGRVLRMSAGQALQLFDGSNHVFAAEITQAS 60 Query: 63 KSIRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 K V + ++ + + ++++ IQKS+E+G+ I P+ + Sbjct: 61 KKSVLVNVVSREEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVK 120 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + + + + I+A EQC +P I P LE D ++ S Sbjct: 121 LDEERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMELEAWCAEPDSGLKLNLHPRAAHS 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAI 234 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 235 TALQVRFGD 243 >gi|91228680|ref|ZP_01262594.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01] gi|91187751|gb|EAS74069.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R++ + S D ++ VLRMKEG ++LLF+G E+ + IS V K Sbjct: 2 RTPRIYHPETIHQLGSLALSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKS 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E + D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VLVNITERLENNIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE K ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG SEE E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|126175723|ref|YP_001051872.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS155] gi|152999348|ref|YP_001365029.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS185] gi|304411141|ref|ZP_07392756.1| protein of unknown function DUF558 [Shewanella baltica OS183] gi|307306436|ref|ZP_07586179.1| protein of unknown function DUF558 [Shewanella baltica BA175] gi|125998928|gb|ABN63003.1| protein of unknown function DUF558 [Shewanella baltica OS155] gi|151363966|gb|ABS06966.1| protein of unknown function DUF558 [Shewanella baltica OS185] gi|304350334|gb|EFM14737.1| protein of unknown function DUF558 [Shewanella baltica OS183] gi|306910727|gb|EFN41155.1| protein of unknown function DUF558 [Shewanella baltica BA175] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + +SA EQ +P + P L ++ N Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|146284257|ref|YP_001174410.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri A1501] gi|145572462|gb|ABP81568.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 238 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 20/248 (8%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F+D PL + HY+ VLR+ G + LF+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLSLGQHA-LPEASAHYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKK- 59 Query: 66 RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 VE R + + R+D+ IQK+ E+G+ I P+I+ Sbjct: 60 SVSVELYERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCEVRLN 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + R ISA EQC LP I+ P TL L + + + ++V Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWL-DVEADLKLVLHP------- 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + A ++A LIGPEGG E E F+ P LGPR+LR++TA V A+++ Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDSEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 231 AQQLWGDF 238 >gi|146276272|ref|YP_001166431.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides ATCC 17025] gi|145554513|gb|ABP69126.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC 17025] Length = 257 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 14/250 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL + + DQ HYL V+R+ G +LLFNG+DGEW ++++ GK Sbjct: 7 RLYVDQPLGPGQPVRLTQDQAHYLFGVMRLARGAAVLLFNGRDGEWRAEVTEAGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+ + D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 TCAAQTAPLRRPPDLWLMFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177 + + + AAEQC +P + L+ LL W + +I++ DE + Sbjct: 127 QAHAVEAAEQCGGTYVPEVAELAALDRLLSGWPADRRIMWCDENLLGARAGLLEGAGAIE 186 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+ + AILIGPEGG+ +E+ L +P V P+SLGPRILR+DTAAVAA+ Sbjct: 187 ARGFEEAPSQPSPGPWAILIGPEGGFSEDEQARLRRMPQVVPVSLGPRILRADTAAVAAL 246 Query: 235 ALVQAICGDW 244 L Q++ GDW Sbjct: 247 TLWQSVLGDW 256 >gi|328474086|gb|EGF44891.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus 10329] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG +LLF+G E+ + I V K Sbjct: 2 RIPRIYHPETIHQLGTIALSEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVIREVSKKN 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E + D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VLVDVTERVESNIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE + ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG SEE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|222034641|emb|CAP77383.1| UPF0088 protein yggJ [Escherichia coli LF82] gi|312947477|gb|ADR28304.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O83:H1 str. NRG 857C] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTALYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|209694142|ref|YP_002262070.1| 16S ribosomal RNA methyltransferase RsmE [Aliivibrio salmonicida LFI1238] gi|208008093|emb|CAQ78234.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+ L + + S D +++ V+RMKEG+ +LLF+G E+ + I+ K Sbjct: 2 RIPRIHHPELLPSQGKVNLSDDAANHVGRVMRMKEGEAVLLFDGSGAEFPAVITSSSKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ E S ++ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VEVEISERIDHSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNK 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +D+ I+A EQC T+P I P +LE ++ S N+ Sbjct: 122 ERFEKKLDQWHKIAIAACEQCGRNTIPEIRPIMSLEEWCAEEYEGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + NV +LIGPEGG SEE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVTNVRLLIGPEGGLSSEEITMTEQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|153826558|ref|ZP_01979225.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149739650|gb|EDM53864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 243 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLANITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|226328796|ref|ZP_03804314.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198] gi|225201982|gb|EEG84336.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198] Length = 243 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKS 64 + R++ PL TQ + +++ VLRM G + LF+G + + ++I KS Sbjct: 2 RIPRIYHPEPLTAGTQTVLGEEASNHVGRVLRMSSGQKLALFDGSNQVFDAEIIESTKKS 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V + D+ + ++++ IQKSVE+G+ I P+I+ Sbjct: 62 VTVQVNVGIVDDKESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDP 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC ++P + P +LE D + ++ N+ Sbjct: 122 SRLEKKHQQWQKIIISACEQCGRNSIPQLMPVMSLEEWCAQDDGSLKLNLHPRANQRINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVKKVRLLIGPEGGLSPEEIAMTAEHNF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|262164080|ref|ZP_06031819.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus VM223] gi|262027608|gb|EEY46274.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus VM223] Length = 243 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVRLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|262403905|ref|ZP_06080462.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586] gi|262349867|gb|EEY99003.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586] Length = 243 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ + S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLSTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITARVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|330951354|gb|EGH51614.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit 7] Length = 239 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 66 RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +S + Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQQESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|304396754|ref|ZP_07378634.1| protein of unknown function DUF558 [Pantoea sp. aB] gi|304355550|gb|EFM19917.1| protein of unknown function DUF558 [Pantoea sp. aB] Length = 243 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I ++ D +++ VLRM G + LF+G + + ++I++V K Sbjct: 2 RIPRIYHAEPLDIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKK- 60 Query: 66 RFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 R KV E Q + + ++++ IQKS+E+G+ I P+ + Sbjct: 61 RVKVSVTESQPDDHESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPLFSERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC +P I TLE D ++ S N Sbjct: 121 AERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 181 TLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|262191080|ref|ZP_06049287.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT 5369-93] gi|297580608|ref|ZP_06942534.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|262033056|gb|EEY51587.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT 5369-93] gi|297535024|gb|EFH73859.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 243 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITDRVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|229512531|ref|ZP_04402002.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae TMA 21] gi|229350424|gb|EEO15373.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae TMA 21] Length = 243 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITDRVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCSEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|229593532|ref|YP_001455814.2| 16S ribosomal RNA methyltransferase RsmE [Citrobacter koseri ATCC BAA-895] Length = 243 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ P+ +Q D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VDVKVLSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|153835274|ref|ZP_01987941.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156975827|ref|YP_001446734.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116] gi|148868249|gb|EDL67389.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156527421|gb|ABU72507.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116] Length = 243 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG +LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPETIQQLGVIALSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKKN 61 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 VE R + D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VM-VEISERVESSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + ISA EQC +P I P +LE + ++ S N Sbjct: 121 QKRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG S+E + F L LGPR+LR++TAA+ A+ Sbjct: 181 TLPT-----PVEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|163738856|ref|ZP_02146269.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis BS107] gi|161387661|gb|EDQ12017.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis BS107] Length = 242 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 131/237 (55%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL DQ HYL V+R G +LLFNG+DGEW ++++ K S Sbjct: 6 RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L LL +W Q++F DE A Sbjct: 126 QAHAVEAAEQCGGTYVPEVADLQKLSRLLDHWPEERQLMFCDEAEVGSALALASETAAQA 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AI+IGPEGG+ E++ LH+LP +SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 186 P-WAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241 >gi|269960438|ref|ZP_06174811.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834865|gb|EEZ88951.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 243 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG +LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPETIQQLGAIALSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKKN 61 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 VE R + D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VM-VEISERVESSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + +SA EQC +P I P +LE + ++ S N Sbjct: 121 QKRFEKKLAQWQKIAVSACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG S+E + F L LGPR+LR++TAA+ A+ Sbjct: 181 TLPT-----PVEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|237798149|ref|ZP_04586610.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021001|gb|EGI01058.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 239 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQVHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 +R ++ + Q + + + R+D+ IQK+ E+G+ I P+++ + Sbjct: 61 VRVQMTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEIDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|330957011|gb|EGH57271.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 239 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q + + + R+D+ IQK+ E+G+ I P+I+ Sbjct: 61 VRVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIISERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L ++ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIRLTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + A ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNEAEVDQAQTAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|117921881|ref|YP_871073.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. ANA-3] gi|117614213|gb|ABK49667.1| protein of unknown function DUF558 [Shewanella sp. ANA-3] Length = 243 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++ ++ + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ +P + P L+ ++ N Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQQWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|24372421|ref|NP_716463.1| hypothetical protein SO_0832 [Shewanella oneidensis MR-1] gi|24346395|gb|AAN53908.1|AE015528_1 conserved hypothetical protein TIGR00046 [Shewanella oneidensis MR-1] Length = 243 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + Q D ++ VLRM G+ I LFNG ++L++I K Sbjct: 2 RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++ ++ + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ +P + P L+ ++ N Sbjct: 122 ERLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETHQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|323162608|gb|EFZ48455.1| RNA methyltransferase family protein [Escherichia coli E128010] Length = 243 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEITSASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|113969034|ref|YP_732827.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-4] gi|113883718|gb|ABI37770.1| protein of unknown function DUF558 [Shewanella sp. MR-4] Length = 243 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++ ++ + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ +P + P L+ ++ N Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|317049423|ref|YP_004117071.1| hypothetical protein Pat9b_3219 [Pantoea sp. At-9b] gi|316951040|gb|ADU70515.1| protein of unknown function DUF558 [Pantoea sp. At-9b] Length = 243 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F PL + ++ D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIFHPEPLAVNSEVFLDEDAANHVGRVLRMSAGQRLELFDGSNLTFAAEITQADKKR 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S+ ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VKVRVLDSQQDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I TLE ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEAADGLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + + +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERIRLLIGPEGGLSTEEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|254226308|ref|ZP_04919899.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621170|gb|EAZ49513.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 243 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGITTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|303238634|ref|ZP_07325167.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2] gi|302593753|gb|EFL63468.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2] Length = 247 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 12/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ +G+ Y+++ VLR+K + + L +G E++++I G Sbjct: 1 MPRFFINSKDVFDDNINITGEDYNHIKKVLRLKCEEIVTLSDGIGNEYVAEIKDFGDGFV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 +E + V K++++D++IQKSVE+G+ I PV+T T Sbjct: 61 HTKVIESYKNTTEPPIKVTLYQGLPKSDKMDFIIQKSVELGISRIVPVLTERTVVRLDSE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ +R + AA+QC+ +P I P + + +K H+ + S+NS Sbjct: 121 KDAAKKCERWNRISQEAAKQCNRGIIPKIEVPISFKEAIKKV-HDVPLSLIPYEKESKNS 179 Query: 178 LEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L++ L ++ I V++ IGPEGG+ +E E + ++ ++LGPRILR++TA + + + Sbjct: 180 LKQILKSVGDISEVSVFIGPEGGFTEQEIEEAVNCG-LSSVTLGPRILRTETAGITVLTI 238 Query: 237 VQAICGD 243 + GD Sbjct: 239 LMYELGD 245 >gi|114048821|ref|YP_739371.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-7] gi|113890263|gb|ABI44314.1| protein of unknown function DUF558 [Shewanella sp. MR-7] Length = 243 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + Q D ++ VLRM G++I LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGNGNDYLAEIVDAGKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++ ++ + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ +P + P L+ ++ N Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|238754605|ref|ZP_04615959.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri ATCC 29473] gi|238707236|gb|EEP99599.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri ATCC 29473] Length = 243 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S D +++ VLRM EG ++ LF+G + + ++I +V K Sbjct: 2 RIPRIYHPQPLSAHTELALSDDAANHVGRVLRMSEGHHLQLFDGSNQVFSAEIIHVDKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VHVHLGEAALEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC TLP I LE D + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNTLPEIREAMQLEAWCAEQDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVNRVRLLIGPEGGLTADEIEMTSHHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|163732851|ref|ZP_02140296.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149] gi|161394211|gb|EDQ18535.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149] Length = 247 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 95/237 (40%), Positives = 134/237 (56%), Gaps = 5/237 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL S DQ HYL V+R+ G ++L+F+G+ GEWL++++ GK Sbjct: 14 RLYVDHPLGEGQSVPVSRDQAHYLFGVMRLGVGAHVLVFDGQSGEWLAEVAQAGKRAGEL 73 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+VEMG I PV T +T DR+ Sbjct: 74 HLLRQTRPLLMPPDLWLLFAPIKKARTDFIVEKAVEMGAARIMPVQTEFTNAGRIQRDRL 133 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+++L WD I+F DE E L + Sbjct: 134 QAHAVEAAEQCGGTFVPKVDDLARLDWVLGGWDTTRSIMFCDEERAGE----SLTLLQKA 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E E L SL P+SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 190 GPWAILIGPEGGFSPREHEKLGSLAHAHPVSLGPRILRADTAAVAALTVWQQALGDW 246 >gi|322834233|ref|YP_004214260.1| hypothetical protein Rahaq_3541 [Rahnella sp. Y9602] gi|321169434|gb|ADW75133.1| protein of unknown function DUF558 [Rahnella sp. Y9602] Length = 243 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L ++ S D +++ VLRM+ G I LF+G + + + I+ V K Sbjct: 2 RIPRIYHPEILTAHSEIALSEDAANHVGRVLRMQPGQAIQLFDGSNQVFEASITQVDKKS 61 Query: 66 RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q ++ + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VSVSLNQGVLADNESPLNLHLGQVISRGEKMEFTIQKSIELGVNTITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE D + ++ S N+ Sbjct: 122 ERLEKKLQQWQKIAIAACEQCGRNRIPEIRPAMQLEAWCNEQDDSLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVSHVRLLIGPEGGLSAEEIAMTSGYGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|269965751|ref|ZP_06179848.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829619|gb|EEZ83856.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 243 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R++ + S D ++ VLRMKEG ++LLF+G E+ + IS V K Sbjct: 2 RTPRIYHPETIHQLGSLALSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKS 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VLVNITERVESSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE + ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG SEE E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|302188983|ref|ZP_07265656.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae 642] Length = 239 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLNESFAGQVESVLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLTEWIKQTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|146305452|ref|YP_001185917.1| hypothetical protein Pmen_0412 [Pseudomonas mendocina ymp] gi|145573653|gb|ABP83185.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas mendocina ymp] Length = 241 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 19/247 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F+D PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFIDAPLSLGQH-DLPEAQAHYIGRVLRHAVGDALQLFDGSGQEYLGELIEVGKK- 59 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +VE + + + R+D+ IQK+ E+G I P+++ Sbjct: 60 SVRVELREAIAGMSESPLRIHLGQGLSRGERMDWAIQKATELGAAEITPIVSARCEVRLK 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + M R ISA EQC LP I PP L L+ + + ++V Sbjct: 120 DERADKRMAHWRQVAISACEQCGRSVLPLINPPLELAAWLQQIEADLKLVLHPVAA---- 175 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + ++A L+GPEGG E + + F LGPR+LR++TA V A+++ Sbjct: 176 ---PLQSHDKPNSLAFLVGPEGGLSEAEVDQTKAAGF-HAARLGPRVLRTETAPVVALSV 231 Query: 237 VQAICGD 243 Q + GD Sbjct: 232 AQQLWGD 238 >gi|116054150|ref|YP_788593.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa UCBPP-PA14] gi|115589371|gb|ABJ15386.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 240 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R FVD PL + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFVDQPLALGQH-DLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60 Query: 65 IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ Q Q + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC +LP I+PP LE L+ D ++V Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDELRLVLHPVAA----- 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +A L+GP+GG E E + F LGPR+LR++TA V A+A+ Sbjct: 176 --PLASHVPPSRLAFLVGPKGGLSDAEVEQAKAAGF-HAARLGPRVLRTETAPVVALAVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|330984681|gb|EGH82784.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009640|gb|EGH89696.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 239 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|229525160|ref|ZP_04414565.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae bv. albensis VL426] gi|229338741|gb|EEO03758.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae bv. albensis VL426] Length = 243 Score = 274 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S ++ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEAMKLNLHPRAKYSIHT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|323498678|ref|ZP_08103669.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM 21326] gi|323316278|gb|EGA69298.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM 21326] Length = 243 Score = 274 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ + S D ++ VLRMKEG +LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPDAITQLGSLMLSDDAAGHIGRVLRMKEGQQVLLFDGSGSEFPATISSVSKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V E RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VEVEVTERIERSAESPLDLHLGQVVSRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKMAQWQKIAISACEQCGRNTVPEIRPIMQLEDWCGEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVERVRLLIGPEGGLSAEEISMTEKYKFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|320322008|gb|EFW78104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. B076] gi|320330886|gb|EFW86860.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. race 4] gi|330872110|gb|EGH06259.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. race 4] Length = 239 Score = 274 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|293390908|ref|ZP_06635242.1| 16S rRNA methyltransferase RsmE [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951442|gb|EFE01561.1| 16S rRNA methyltransferase RsmE [Aggregatibacter actinomycetemcomitans D7S-1] Length = 244 Score = 274 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T S D +++ VLRM+ GD + LF+G + + + I+ V K Sbjct: 2 RVPRIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVTKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VEVDILNRQFDNRESHLTIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 122 ERMEKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAERDEALKLNLHPRASYSIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L ++ A V +LIG EGG +E FV + LG R+LR++TAA+AA+ ++ Sbjct: 182 LPEIPAA----GVRLLIGSEGGLSPQEIAQTEQQGFVE-VLLGKRVLRTETAAIAAITVL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|330942525|gb|EGH45109.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 274 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|260575962|ref|ZP_05843957.1| protein of unknown function DUF558 [Rhodobacter sp. SW2] gi|259021888|gb|EEW25189.1| protein of unknown function DUF558 [Rhodobacter sp. SW2] Length = 245 Score = 274 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 138/238 (57%), Gaps = 2/238 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL + + DQ +YL V+R+ GD +LLFNG+DGEW ++ GK Sbjct: 7 RLYVDQPLGVGQPVPLNADQANYLFAVMRLGRGDAVLLFNGRDGEWRGVVAEAGKRGGVL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+ E+G I PV TR+T DR+ Sbjct: 67 VCDAQTRPLQMPPDLWLLFAPIKKARTDFIVEKAAELGASRILPVQTRFTNAERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186 + + + AAEQC +P + L+ +L W ++++ DE G ++L L A A Sbjct: 127 QAHAVEAAEQCGGTFVPEVCDLQGLDKVLDTWPAERRLLWCDEHMVGGSSALTGLLATAR 186 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L LP V P+SLGPRILR+DTAAVAA+ L QA GDW Sbjct: 187 GGPWAILIGPEGGFAESEQARLRGLPQVVPISLGPRILRADTAAVAALVLWQAALGDW 244 >gi|259909605|ref|YP_002649961.1| hypothetical protein EpC_29800 [Erwinia pyrifoliae Ep1/96] gi|224965227|emb|CAX56759.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] gi|310766488|gb|ADP11438.1| conserved uncharacterized protein [Erwinia sp. Ejp617] Length = 243 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL S + H++ VLRM G + LF+G + ++I K Sbjct: 2 RIPRIYQPEPLQTGNDIALSEEAAHHVGRVLRMGTGQMLELFDGTGLVFAAEIIQADKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 SR +++S + + + ++++ IQK+VE+G+ I P+ + Sbjct: 62 VCVKINASREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P + L+ + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEITMTAQHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|256004286|ref|ZP_05429268.1| protein of unknown function DUF558 [Clostridium thermocellum DSM 2360] gi|255991720|gb|EEU01820.1| protein of unknown function DUF558 [Clostridium thermocellum DSM 2360] Length = 254 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 123/247 (49%), Gaps = 9/247 (3%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FV SG+ ++++ VLR+ +GD + + +G+ ++L +I + + Sbjct: 6 FKMPRFFVRKSDIYGDFINISGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDA 65 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + VE + V K++++DY+IQK+VE+G+ I PVIT T Sbjct: 66 VINTRIVEAMKNATEPPLKVTLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMD 125 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ +R ++ AA+QC+ +P + P + + L N + + E Sbjct: 126 EKSGSKKYERWNRISMEAAKQCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIK 185 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + + + V++ IGPEGG+ E ET S + P++LGPRILR++TA +A +++ Sbjct: 186 LKEVLSSSSSVEKVSVFIGPEGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSI 244 Query: 237 VQAICGD 243 + GD Sbjct: 245 LMYELGD 251 >gi|308188039|ref|YP_003932170.1| UPF0088 protein yggJ [Pantoea vagans C9-1] gi|308058549|gb|ADO10721.1| UPF0088 protein yggJ [Pantoea vagans C9-1] Length = 243 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I ++ D +++ VLRM G + LF+G + + ++I++V K Sbjct: 2 RIPRIYHAGPLEIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKKR 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +S+ ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VKVSVTESQPDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I TLE D ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|311278138|ref|YP_003940369.1| hypothetical protein Entcl_0810 [Enterobacter cloacae SCF1] gi|308747333|gb|ADO47085.1| protein of unknown function DUF558 [Enterobacter cloacae SCF1] Length = 243 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ P+ + Q S D +++ VLRM G I LF+G + + ++I + K Sbjct: 2 RIPRIYHPEPVTVGQQMALSDDAANHVGRVLRMGIGQAIQLFDGSNQLFDAEIVHADKKS 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R V ++ + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VRVTVLKGETDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKIQQWQKIAIAACEQCGRNRIPEIRPAMDLEQWCAEQDDALKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTARYRF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|27364902|ref|NP_760430.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio vulnificus CMCP6] gi|37681051|ref|NP_935660.1| hypothetical protein VV2867 [Vibrio vulnificus YJ016] gi|320155285|ref|YP_004187664.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus MO6-24/O] gi|27361047|gb|AAO09957.1| Ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus CMCP6] gi|37199801|dbj|BAC95631.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319930597|gb|ADV85461.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus MO6-24/O] Length = 243 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPETIQHLGVIALSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVGKKS 61 Query: 66 RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E RS D+ + ++++ IQKSVE+G+ I P+I+ Sbjct: 62 VMVELSERVERSSESPLDLHLGQVISRGEKMEFTIQKSVELGVNTITPLISDRCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P +LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNTIPEIRPIMSLEAWCAEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG SEE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVTKVRLLIGPEGGLSSEEIDMTQQYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|253990749|ref|YP_003042105.1| 16S ribosomal RNA methyltransferase RsmE [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639080|emb|CAR67692.1| Hypothetical protein yggJ [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782199|emb|CAQ85363.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 270 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 14/248 (5%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + + R++ L T+ S + +++ VLRM G + LF+G + + ++I+ K Sbjct: 27 NMRIPRIYHPELLSSSTEIYLSDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAEITEASK 86 Query: 64 S-IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 ++ + + + + ++ + ++++ IQKSVE+G+ I P+I+ Sbjct: 87 KSVKVHISNSTLADNESPLNLHLGQVISRGEKMEFTIQKSVELGVNTITPLISERCGVKL 146 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + + I+A EQC +P I P LE D + ++ S Sbjct: 147 DGDRLAKKLQQWQKIAIAACEQCCRNRIPEIRPVMQLEQWCAENDGSLKLNLHPRANQSI 206 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+L + V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ Sbjct: 207 NTLPL-----PVEKVRLLIGPEGGLSTDEIAMTANHQF-TDILLGPRVLRTETTALTAIT 260 Query: 236 LVQAICGD 243 +Q GD Sbjct: 261 ALQVRFGD 268 >gi|254475767|ref|ZP_05089153.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11] gi|214030010|gb|EEB70845.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11] Length = 242 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 129/237 (54%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V+ PL DQ HYL V+R G + LFNG+DGEW ++I+ GK Sbjct: 6 RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQAVGGQVSLFNGRDGEWRAEIAEAGKRNGLL 65 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V + QSR D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 VCQEQSRPLMLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSDRIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L +L W Q++F DE A Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLSRVLDQWPQERQLMFCDEAEVGTALTLAAADHAKA 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AI+IGPEGG+ E++ LH LP +SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 186 P-WAIVIGPEGGFSEAERKRLHGLPQSHVVSLGPRILRADTAAVAALTIWQQAYGDW 241 >gi|56698449|ref|YP_168823.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria pomeroyi DSS-3] gi|56680186|gb|AAV96852.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 251 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 130/246 (52%), Gaps = 10/246 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ L + S DQ HYL V+R+ GD + LFNG+DGEW +++ GK Sbjct: 6 RLYVEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGEL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 E QS D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 LCESQSAPLRMPPDLWLLFAPIKKARTDFIVEKAAEMGAARIVPVQTEFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--------- 178 + + + AAEQC +P + L LL W Q++F DET +S Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLGPLLDRWPAERQLMFCDETLAGRSSALSGLLAGQG 185 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E AILIGPEGG+ E+ L +LP +SLGPRILR+DTAAVAA+ L Q Sbjct: 186 ENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILRADTAAVAALTLWQ 245 Query: 239 AICGDW 244 GDW Sbjct: 246 QALGDW 251 >gi|99078057|ref|YP_611315.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria sp. TM1040] gi|99035195|gb|ABF62053.1| protein of unknown function DUF558 [Ruegeria sp. TM1040] Length = 246 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 130/241 (53%), Gaps = 5/241 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL DQ HYL V+R+ + LFNG+DGEW ++++ GK Sbjct: 6 RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLSVAARVALFNGRDGEWQAEVAEAGKRGGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 QS+ D+ IF+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 ACLEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATEFTNSERIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-- 185 + + + AAEQC +P + L LL +W Q++F DE + + + Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLPSLLDHWPAERQLMFCDEAEIGQRLFLDVAQVEGS 185 Query: 186 --HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 AILIGPEGG+ E++ LH++P +SLGPRILR+DTAAVAA+ L Q GD Sbjct: 186 AGAAGPWAILIGPEGGFSDAERKRLHAMPQAHVVSLGPRILRADTAAVAALTLWQQRLGD 245 Query: 244 W 244 W Sbjct: 246 W 246 >gi|289625569|ref|ZP_06458523.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647472|ref|ZP_06478815.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 2250] gi|298485033|ref|ZP_07003130.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160443|gb|EFI01467.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330865771|gb|EGH00480.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 239 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+G I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|330446905|ref|ZP_08310556.1| ribosomal RNA small subunit methyltransferase E [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491096|dbj|GAA05053.1| ribosomal RNA small subunit methyltransferase E [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 243 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + + S D +++ V+RM+ G +L+F+G D E+ + I+ K Sbjct: 2 RIPRIYHPESLPSQGKVMLSDDAANHVGRVMRMQAGQELLMFDGSDAEFPAVITSASKK- 60 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +VE QSR + ++ + +++++ IQKSVE+G+ I P+I+ Sbjct: 61 SVEVEIQSRVEHSVESPLNIHLGQVISRGDKMEFTIQKSVELGVSTITPLISERCGVKLN 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +D+ + I+A EQC +P I P LE ++ S N Sbjct: 121 AERFEKKLDQWQKIAIAACEQCGRNVVPTIRPVMKLEQWCAEEYDGLKLNLHPRAKYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + NV +LIGPEGG +EE F + LGPR+LR++T A+ A+ Sbjct: 181 TLPT-----PVTNVRLLIGPEGGLSAEEIGMTEEYKFDE-ILLGPRVLRTETTAMTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|293394489|ref|ZP_06638785.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582] gi|291422954|gb|EFE96187.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582] Length = 243 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ PL T+ S D +++ VLRM G + LF+G + + ++I+ V K Sbjct: 2 RIPRIHHPEPLRSDTEIVLSEDAANHVGRVLRMSPGQLLQLFDGSNQVFDAEITRVDKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 R + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VQVQIGAGRQEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNTITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC + I P LE D + ++ S N+ Sbjct: 122 ERLAKKLQQWQKIAIAACEQCGRNRIADIRPAMPLEAWCAEQDDSLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +V +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LAL-----PVNHVRLLIGPEGGLSADEIAMTSAHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|170728459|ref|YP_001762485.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella woodyi ATCC 51908] gi|169813806|gb|ACA88390.1| protein of unknown function DUF558 [Shewanella woodyi ATCC 51908] Length = 243 Score = 274 bits (701), Expect = 9e-72, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL I Q + + ++ VLRM G+ I LFNG E+LS+I K Sbjct: 2 RIPRIYQASPLQIGNQVELDDEPASHIGRVLRMNAGEQISLFNGDGHEYLSEIISASKKN 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++++ + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 VSVKVLSSTLNESESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I A EQ +P I P T+E ++ Sbjct: 122 ERLEKKIQQWQKIVIGACEQSGRSQVPEIRPAMTIEAWSAEQTDATKLNLHPRAAHGIGG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L P V +LIGPEGG E F T + LGPR+LR++TAA+ A++ + Sbjct: 182 LSLTS-----PKVRLLIGPEGGLSEAEIMMTEQYQF-TDVLLGPRVLRTETAALTAISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|238918250|ref|YP_002931764.1| hypothetical protein NT01EI_0287 [Edwardsiella ictaluri 93-146] gi|238867818|gb|ACR67529.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL I + D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIVSADKKN 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R +++ + + + ++++ IQKS+E+G+ I P+I+ Sbjct: 62 VRVRLDGVREEDSESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERCGVRLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P I P TLE D ++ S N+ Sbjct: 122 ERMAKKQQQWQKIAIAACEQCGRNRIPQIRPIMTLEAWCAEPDDGLRLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PQHRIRLLIGPEGGLSADEIAMTANHRF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|66043720|ref|YP_233561.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae B728a] gi|63254427|gb|AAY35523.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv. syringae B728a] gi|330971683|gb|EGH71749.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 239 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVTQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|330899324|gb|EGH30743.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. japonica str. M301072PT] Length = 239 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|238795147|ref|ZP_04638737.1| Ribosomal RNA small subunit methyltransferase E [Yersinia intermedia ATCC 29909] gi|238725546|gb|EEQ17110.1| Ribosomal RNA small subunit methyltransferase E [Yersinia intermedia ATCC 29909] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIVRSDKKS 61 Query: 66 RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q + ++ + ++++ +QKS+E+G+ I P+ + Sbjct: 62 LLVRLGEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I L D + ++ S N+ Sbjct: 122 ERLAKKLQQWQKIAIAACEQCGRNRIPEIRSAMQLSDWCAEQDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + NV +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----PTLNNVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|290476315|ref|YP_003469219.1| hypothetical protein XBJ1_3337 [Xenorhabdus bovienii SS-2004] gi|289175652|emb|CBJ82455.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L ++T+ S + +++ VLRM G + LF+G + + +++ K Sbjct: 2 RIPRIYHPERLSVETEIYLSDEAANHVGRVLRMSNGQPLQLFDGSNQVFDAELIEASKKT 61 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I+ ++ S ++ + ++++ IQKSVE+G+ I P+++ Sbjct: 62 IKVRITDGKLSDHESPLNLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE D + ++ S N+ Sbjct: 122 ERLEKKLQQWKKIVISACEQCGRNCIPEIRPVMSLEAWCAENDGSLKLNLHPRASQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + +LIGPEGG +EE E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVEKIRLLIGPEGGLSAEEIEMTANHQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|123443620|ref|YP_001007592.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090581|emb|CAL13450.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL ++ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANSELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I E Q + ++ + ++++ +QKS+E+G+ I P+ + Sbjct: 62 LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I L D + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAAQDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|308048318|ref|YP_003911884.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM 9799] gi|307630508|gb|ADN74810.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM 9799] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL Q D +++ VLRM+ G ++LFNG ++ + I GK Sbjct: 2 RVPRIYQPVPLAAGQQLALDDDGANHIGRVLRMQPGQAVMLFNGDGQQYPAIIDEAGKKN 61 Query: 66 RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + ++++ IQKSVE+G +I P+ + Sbjct: 62 VLVTVQSVEQHHVESPLALHLGQVISRGEKMEFTIQKSVELGAASITPLWSERCGVKLAG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P + P L+ + ++ S N+ Sbjct: 122 DRLDKKVAQWQKIAIAACEQCGRNVVPEVRPVMRLDQWMAEPFEGLKLNLHPRAEYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + + +LIGPEGG +EE F T + LGPR+LR++TAA+ AM + Sbjct: 182 LPE-----PVQALRLLIGPEGGLSAEEIAAAREFDF-TDILLGPRVLRTETAALTAMTAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|120597613|ref|YP_962187.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. W3-18-1] gi|146294248|ref|YP_001184672.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella putrefaciens CN-32] gi|120557706|gb|ABM23633.1| protein of unknown function DUF558 [Shewanella sp. W3-18-1] gi|145565938|gb|ABP76873.1| protein of unknown function DUF558 [Shewanella putrefaciens CN-32] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I D ++ VLRM G+NI LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + +SA EQ +P + P L ++ N Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|114570791|ref|YP_757471.1| 16S ribosomal RNA methyltransferase RsmE [Maricaulis maris MCS10] gi|114341253|gb|ABI66533.1| protein of unknown function DUF558 [Maricaulis maris MCS10] Length = 254 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 138/249 (55%), Gaps = 12/249 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66 RLF+D PL + + HYL +V+R EGD + +FNG+DGEW + I++ + Sbjct: 5 PRLFIDAPLSASAAIPLAREDAHYLINVMRRGEGDVVRVFNGRDGEWSAVIAHASRKGAG 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V Q+R Q D+ +F+P++ ++ + +++K+ E+G I PV+T TQ+ +R Sbjct: 65 LTVADQTRPQQGVPDLWLMFAPVRRSKTELIVEKATELGAAVIAPVVTERTQSDRIKFER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-----------TCGSE 175 ++ T AAEQ + L LP + L +L NW + ++F DE G Sbjct: 125 LQAITKEAAEQTERLDLPELRTSEKLAAVLDNWPDDRLLIFCDESGDEADAAWGGARGRG 184 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + A A AILIGPEGG+ E++ L SL V P++LGPRILR++TAA+AA+ Sbjct: 185 QPMAAALAGAGDRPAAILIGPEGGFSPAERDRLRSLQHVVPVTLGPRILRAETAAIAALT 244 Query: 236 LVQAICGDW 244 + Q+ CGDW Sbjct: 245 IWQSTCGDW 253 >gi|332162804|ref|YP_004299381.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604355|emb|CBY25853.1| ribosomal RNA small subunit methyltransferase E [Yersinia enterocolitica subsp. palearctica Y11] gi|325667034|gb|ADZ43678.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330858994|emb|CBX69352.1| ribosomal RNA small subunit methyltransferase E [Yersinia enterocolitica W22703] Length = 243 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I E Q + ++ + ++++ IQKS+E+G+ I P+ + Sbjct: 62 LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVDVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I L D + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCTEQDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|261250170|ref|ZP_05942746.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis CIP 102891] gi|260939286|gb|EEX95272.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis CIP 102891] Length = 258 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S D ++ VLRMKEG +LLF+G E+ ++I+ V K Sbjct: 17 RIPRIYHPEAINQLGSLMLSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAEIASVSKKN 76 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 77 VEVSIIQRVERSSESPLDLHLGQVVSRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 136 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 137 KRFEKKLAQWQKIAISACEQCGRNTVPEIRPIMQLEEWCGEEYDGLKLNLHPRAKYSINT 196 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 197 LPT-----PVEKVRLLIGPEGGLSAEEIGMTENYKFEETL-LGPRVLRTETAALTAITAL 250 Query: 238 QAICGD 243 Q GD Sbjct: 251 QVRFGD 256 >gi|119773713|ref|YP_926453.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella amazonensis SB2B] gi|119766213|gb|ABL98783.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 243 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F L + D + ++ VLRM EG+ I +FNG ++L+ I GK Sbjct: 2 RIPRIFQPLDLSPSAEFALDEDGFAHVGRVLRMGEGEQIRVFNGDGKDYLADIVSAGKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV +Q++ + + +R+D+ +QKSVE+G+ I P+ + Sbjct: 62 LTVKVVAVEDNQSESPLHLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P + P L ++ N Sbjct: 122 ERLDKKIAQWQKIVISACEQCGRATVPVVRPVMDLAEWCAEQTSALKLNLHPRADHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P V +LIGPEGG +EE + F T + LGPR+LR++TAA+ A+ + Sbjct: 182 L-----VLDNPRVRLLIGPEGGLSAEEIAMTETHKF-TEVLLGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QMKFGD 241 >gi|71737741|ref|YP_272747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558294|gb|AAZ37505.1| uncharacterized conserved protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 239 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTEAPLSLGEH-ELPEAQTHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|238798622|ref|ZP_04642097.1| Ribosomal RNA small subunit methyltransferase E [Yersinia mollaretii ATCC 43969] gi|238717508|gb|EEQ09349.1| Ribosomal RNA small subunit methyltransferase E [Yersinia mollaretii ATCC 43969] Length = 243 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG N+ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMSEGQNLQLFDGSNQVFTAEIIRVDKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + ++S + + + ++++ +QKS+E+G+ I P+ + Sbjct: 62 LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC T+P I L D + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLSDWCAEQDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----PSLNKVRLLIGPEGGLSVDEIAMTSHLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|163741896|ref|ZP_02149286.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10] gi|161385069|gb|EDQ09448.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10] Length = 242 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+V+ PL DQ HYL V+R G +LLFNG+DGEW ++++ K S Sbjct: 6 RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 66 ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L +L +W Q++F DE ++L A Sbjct: 126 QAHAVEAAEQCGGTYVPEVVDLQKLSRVLDHWPEERQLMFCDEAEVG-SALALARDTAVQ 184 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AI+IGPEGG+ E++ LH+LP +SLGPRILR+DTAAVAA+ + Q GDW Sbjct: 185 APWAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241 >gi|162139548|ref|YP_218021.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 243 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ F S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|70733090|ref|YP_262863.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens Pf-5] gi|68347389|gb|AAY94995.1| conserved hypothetical protein TIGR00046 [Pseudomonas fluorescens Pf-5] Length = 239 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 19/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F+D PL + + Q HY+ VLRM EG + +F+G E+ + VGK Sbjct: 2 RLSRFFIDAPLSLGEH-ELPEAQAHYIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKK- 59 Query: 66 RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 R +V+ Q + + R+D+ IQK+ E+G+ I P+ + Sbjct: 60 RVRVQLNESFAGQQESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLK 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + R ISA EQC +P I+PP L +K + ++V Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSQVPVIHPPVLLADWIKQARADLKLVLHP------- 172 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + A ++A LIGPEGG E E HS F+ P LGPR+LR++TA V A+A+ Sbjct: 173 VAQPLESHAKPASLAFLIGPEGGLTDAEVELSHSAGFL-PARLGPRVLRTETAPVVALAV 231 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 232 AQQLWGDF 239 >gi|126665848|ref|ZP_01736829.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17] gi|126629782|gb|EBA00399.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17] Length = 244 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 16/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ D PL + + ++ VLRM+ G + LFNG ++ + I+ K Sbjct: 2 RIPRIYTDTPLQAGADAQLDDNAAQHVGRVLRMQPGQALSLFNGDGQDYRALIASASKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q + + +S ++ + K +R+DY +QK+ EMG+ I P+ T Sbjct: 62 VTVQVEQPTANSSESALEIVLGQTLSKGDRMDYAVQKATEMGVTRIVPLSTERCDVRLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176 + R+ ISAAEQC +P I P + L+ + + ++V T Sbjct: 122 DREDKRLSHWRSVAISAAEQCGRARVPDILPVMNITEWLEYSQRCDVRLVLHHRTE---- 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++A +VA++IGPEGG ++E F+ P++LGPR+LR++TA VAAMAL Sbjct: 178 --QSLDSLAKPNSVALMIGPEGGLSADEIAQAEKSGFL-PIALGPRVLRTETAPVAAMAL 234 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 235 CQWLWGDF 242 >gi|62129237|gb|AAX66940.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716087|gb|EFZ07658.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 259 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ F S N+ Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINT 197 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251 Query: 238 QAICGD 243 Q GD Sbjct: 252 QVRFGD 257 >gi|297568502|ref|YP_003689846.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] gi|296924417|gb|ADH85227.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] Length = 242 Score = 272 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 5/243 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 ++R F+D + +G H+L HVLR+ G+ + LF+G+ + + I ++ + Sbjct: 1 MRRFFIDPEAIQGREASLTGSDAHHLQHVLRLTPGERVELFDGRGTVYQAAIDHIEPGLT 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHY 122 R + S + + + + +K ++D ++QK E+G+ ++RP +++T Sbjct: 61 RLTLLSSSDTPPDRLAIHLGQAMLKGKKMDLVVQKCTELGVRSLRPYTSQHTTTPPPGAE 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R + + +QC+ P +PP T LL + + E + Sbjct: 121 KLARWQRIIHESCKQCNQPWPPSCHPPQTFAELLADAADFDLRLICWEEPEAPPLSNIAE 180 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + +V +LIGPEGG+ EE + F+ + LG RILR++TA++ +AL+Q I Sbjct: 181 QLGAPASVLVLIGPEGGFSREEIDLARQAGFI-VIGLGRRILRAETASIVIIALLQYIFN 239 Query: 243 DWY 245 D Y Sbjct: 240 DLY 242 >gi|319427610|gb|ADV55684.1| rRNA base methyltransferase, RsmE [Shewanella putrefaciens 200] Length = 243 Score = 272 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I D ++ VLRM G+NI LFNG ++L++I GK Sbjct: 2 RVPRIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVKLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + +SA EQ +P I P L ++ N Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPLIRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ H V +LIGPEGG +EE + F T + LGPR+LR++TA++ A+ + Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLRFGD 241 >gi|22127196|ref|NP_670619.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis KIM 10] gi|45443246|ref|NP_994785.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis biovar Microtus str. 91001] gi|51597516|ref|YP_071707.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis IP 32953] gi|108806328|ref|YP_650244.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Antiqua] gi|108813291|ref|YP_649058.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Nepal516] gi|145597888|ref|YP_001161964.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Pestoides F] gi|149367057|ref|ZP_01889090.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125] gi|153949952|ref|YP_001399821.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis IP 31758] gi|162418368|ref|YP_001607686.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Angola] gi|165924866|ref|ZP_02220698.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165937327|ref|ZP_02225891.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. IP275] gi|166010231|ref|ZP_02231129.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166212766|ref|ZP_02238801.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. B42003004] gi|167399760|ref|ZP_02305278.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421908|ref|ZP_02313661.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426701|ref|ZP_02318454.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470902|ref|ZP_02335606.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis FV-1] gi|170023088|ref|YP_001719593.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis YPIII] gi|186896639|ref|YP_001873751.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pseudotuberculosis PB1/+] gi|218928106|ref|YP_002345981.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis CO92] gi|229837626|ref|ZP_04457788.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A] gi|229840853|ref|ZP_04461012.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842587|ref|ZP_04462742.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis str. India 195] gi|229903754|ref|ZP_04518867.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516] gi|270487532|ref|ZP_06204606.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27] gi|294502903|ref|YP_003566965.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003] gi|21960262|gb|AAM86870.1|AE013933_7 hypothetical protein y3320 [Yersinia pestis KIM 10] gi|45438114|gb|AAS63662.1| conserved hypothetical protein [Yersinia pestis biovar Microtus str. 91001] gi|51590798|emb|CAH22444.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108776939|gb|ABG19458.1| hypothetical protein YPN_3131 [Yersinia pestis Nepal516] gi|108778241|gb|ABG12299.1| hypothetical protein YPA_0331 [Yersinia pestis Antiqua] gi|115346717|emb|CAL19600.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209584|gb|ABP38991.1| hypothetical protein YPDSF_0581 [Yersinia pestis Pestoides F] gi|149290671|gb|EDM40747.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125] gi|152961447|gb|ABS48908.1| ribosomal small subunit methyltransferase RsmE [Yersinia pseudotuberculosis IP 31758] gi|162351183|gb|ABX85131.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis Angola] gi|165914801|gb|EDR33414.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. IP275] gi|165923066|gb|EDR40217.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. F1991016] gi|165990717|gb|EDR43018.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. E1979001] gi|166206058|gb|EDR50538.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. B42003004] gi|166960045|gb|EDR56066.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050468|gb|EDR61876.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054304|gb|EDR64123.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749622|gb|ACA67140.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis YPIII] gi|186699665|gb|ACC90294.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis PB1/+] gi|229679524|gb|EEO75627.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516] gi|229690897|gb|EEO82951.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis str. India 195] gi|229697219|gb|EEO87266.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704314|gb|EEO91325.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A] gi|262360938|gb|ACY57659.1| hypothetical protein YPD4_0750 [Yersinia pestis D106004] gi|262364878|gb|ACY61435.1| hypothetical protein YPD8_0745 [Yersinia pestis D182038] gi|270336036|gb|EFA46813.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27] gi|294353362|gb|ADE63703.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003] gi|320013984|gb|ADV97555.1| hypothetical protein YPC_0866 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 243 Score = 272 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL T+ + + +++ VLRM EG ++ LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLQANTELALTDEAANHVGRVLRMTEGQSLQLFDGSNQIFDAEIIRADKKN 61 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I E Q + ++ + ++++ +QKS+E+G+ I P+ + Sbjct: 62 LIVRLAEGQWEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSARCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC T+P I L D + ++ S N+ Sbjct: 122 ERLTKKIQQWQKIAIAACEQCGRNTIPEIRDAMQLADWCAESDDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|119383376|ref|YP_914432.1| hypothetical protein Pden_0624 [Paracoccus denitrificans PD1222] gi|119373143|gb|ABL68736.1| protein of unknown function DUF558 [Paracoccus denitrificans PD1222] Length = 239 Score = 272 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLF+D PL + + DQ HYL+ V+R GD IL+FNG+DGEWL++I + K Sbjct: 5 RLFIDHPLAEGQGIELNADQSHYLSSVMRQGAGDEILVFNGQDGEWLARIERIAKRGGAL 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 65 EALRQTAPQLNPPDLWLVFAPIKKARTDFIVEKAAEMGAARILPVQTDHTNSERIRQDRL 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L LL WD +I++ADE + L + Sbjct: 125 QAHAVEAAEQCGGTHVPEVCDLVPLSRLLDGWDAGRRILWADEALAG--PAQVLSGLPRG 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E++ L ++ VT ++LGPRILR+DTAAVA++AL QA GDW Sbjct: 183 P-WAILIGPEGGWSESERKRLSAMDCVTRIALGPRILRADTAAVASLALWQASLGDW 238 >gi|238896476|ref|YP_002921214.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae NTUH-K2044] gi|238548796|dbj|BAH65147.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 268 Score = 272 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 27 RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 86 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 87 VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 146 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P LE D ++ S N+ Sbjct: 147 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINT 206 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 207 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 260 Query: 238 QAICGD 243 Q GD Sbjct: 261 QVRFGD 266 >gi|113461711|ref|YP_719780.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 129PT] gi|112823754|gb|ABI25843.1| 16S rRNA m(3)U-1498 methyltransferase [Haemophilus somnus 129PT] Length = 245 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + + S D +++ VLRM+ G+ I LF+G + + + I+ K Sbjct: 2 RIPRIYHPTSLENQQTCQLSDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA 61 Query: 66 RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 IEVNILSRQLDNRESPLFIHLGQVISRGERMEFTIQKSVELGVNIITPLWSERCGVKLDK 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ISA EQC +P I P L+ D ++ + + Sbjct: 122 DRMEKKIQQWQKIAISACEQCGRNIVPEIRPLMKLQDWCAEQDGTLKLNLHPRAKYTIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L ++ V +LIGPEGG ++E + F T + LG R+LR++TAA++A+ + Sbjct: 182 LPEI----PPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETAALSAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|294634386|ref|ZP_06712923.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685] gi|291092194|gb|EFE24755.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685] Length = 243 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL I + S D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLSIPGEVNLSDDAANHVGRVLRMGPGHALQLFDGSNRVFDAEIVSADKKS 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ ++ + + ++++ IQKS+E+G+ I P+I+ Sbjct: 62 VRVRLTAVHEENRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLISERCGVRLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +L I P TLE D ++ S N+ Sbjct: 122 ERLAKKQQQWQKIAIAACEQCGRNSLALIRPAMTLEAWCAEPDDGLRLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG + E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PLSRVRLLIGPEGGLSASEIAMTADYHF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|292487087|ref|YP_003529957.1| hypothetical protein EAMY_0599 [Erwinia amylovora CFBP1430] gi|292900528|ref|YP_003539897.1| hypothetical protein EAM_2830 [Erwinia amylovora ATCC 49946] gi|291200376|emb|CBJ47504.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291552504|emb|CBA19549.1| UPF0088 protein yggJ [Erwinia amylovora CFBP1430] gi|312171190|emb|CBX79449.1| UPF0088 protein yggJ [Erwinia amylovora ATCC BAA-2158] Length = 243 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I + S + +++ VLRM G + LF+G + ++I K Sbjct: 2 RIPRIYQPRPLQIGNEIALSEEAANHVGRVLRMSAGQMLELFDGTSLVFAAEIIQADKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 SR +++S + + + ++++ +QK+VE+G+ I P+ + Sbjct: 62 VCVRINASREDSRESPLHLHLGQVMSRGEKMEFTVQKAVELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M + + I+A EQC +P + L+ + ++ S N+ Sbjct: 122 ERLAKKMQQWQKIAIAACEQCGRNCIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PIERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|84515820|ref|ZP_01003181.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53] gi|84510262|gb|EAQ06718.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53] Length = 244 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 134/238 (56%), Gaps = 6/238 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RL+VD PL + + DQ HYL V+R+ GD + L N +DGEW + + G K Sbjct: 10 RLYVDHPLGVGQSVPLNRDQAHYLFGVMRLGAGDVLSLINSRDGEWDAVVEKAGNKGGVL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDR 126 + Q+R D+ +F+PI+ R ++++K+VE+G I PV T +TQ D+ Sbjct: 70 ACQAQTRPLQTPPDLWLVFAPIRKERTAFIVEKAVELGAARIIPVQTAFTQAANRIRQDK 129 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++ + + A+EQC +P + L+ LL +W + Q++F DE +L AI Sbjct: 130 LQAHAVEASEQCGGTFVPPVDDLAKLDRLLADWPKDRQLMFCDEAAIGAPV--RLPAIPG 187 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E++ L +LPF +SLGPRILR+DTAAVAA+ L Q GDW Sbjct: 188 P--WAILIGPEGGFSPAERDKLRALPFAHAVSLGPRILRADTAAVAALTLWQQALGDW 243 >gi|260767459|ref|ZP_05876396.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii CIP 102972] gi|260617571|gb|EEX42753.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii CIP 102972] gi|315181239|gb|ADT88153.1| hypothetical protein vfu_A03045 [Vibrio furnissii NCTC 11218] Length = 243 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++A VLRM+EG +L+F+G E+ + I GK Sbjct: 2 RVPRIYHPHPITHLGPLALSDDAAGHIARVLRMQEGQEVLVFDGSGAEFPAIIHEAGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E + ++ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VVVDLAERIDTNLESPLNLHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P TLE ++ S N+ Sbjct: 122 KRFEKKLQQWQKIAISACEQCGRNVVPDIRPIMTLEAWCAEQTDALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVTKVRLLIGPEGGLSAEEIDMTQQYHFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|288933585|ref|YP_003437644.1| hypothetical protein Kvar_0702 [Klebsiella variicola At-22] gi|288888314|gb|ADC56632.1| protein of unknown function DUF558 [Klebsiella variicola At-22] Length = 243 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ L I +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 2 RIPRIHHPERLTIGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P LE D ++ S N+ Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|238759323|ref|ZP_04620489.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae ATCC 35236] gi|238702484|gb|EEP95035.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae ATCC 35236] Length = 261 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T+ S + +++ VLRM EG N+ LF+G + + ++I K Sbjct: 20 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMMEGQNLQLFDGSNQVFTAEIIRADKKN 79 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + ++S + + + ++++ +QKS+E+G+ I P+ + Sbjct: 80 LIVRIAEGLLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 139 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I L D + ++ S N+ Sbjct: 140 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAEQDDSLKLNLHPRANNSINT 199 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 200 LS-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 253 Query: 238 QAICGD 243 Q GD Sbjct: 254 QVRFGD 259 >gi|206576729|ref|YP_002236603.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella pneumoniae 342] gi|290511348|ref|ZP_06550717.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp. 1_1_55] gi|206565787|gb|ACI07563.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella pneumoniae 342] gi|289776341|gb|EFD84340.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp. 1_1_55] Length = 243 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 2 RIPRIHHPERLTVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P LE D ++ S N+ Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|255264688|ref|ZP_05344030.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255107023|gb|EET49697.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 239 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+VD L + +Q HYL V+R + + LFNG+DGEW +++ GK Sbjct: 6 RLYVDHDLGAGQSVLLTKEQAHYLFGVMRKGVDEVLSLFNGRDGEWDARVVEAGKRKGIL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 E QS+ DV +F+PIK R D++++K+ EMG I PV T +T + +++ Sbjct: 66 VCEAQSKPLQLPPDVWLMFAPIKKARTDFIVEKATEMGAARIMPVQTEFTNSDRVRHEKL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + AAEQC +P + P L +L W + +++F DE + + A A Sbjct: 126 VAHAVEAAEQCGGTYVPPVDPLAKLTKVLAAWPEDRKLLFCDEALVG---AQAVFAEASH 182 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+E L + P+VT SLGPRILR+DTAAVAA+ L Q GDW Sbjct: 183 DKWAILIGPEGGFSQAERELLGAKPYVTQASLGPRILRADTAAVAALTLWQTTQGDW 239 >gi|56415032|ref|YP_152107.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363961|ref|YP_002143598.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|229307087|ref|YP_001590023.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|229597264|ref|YP_002047082.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|56129289|gb|AAV78795.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095438|emb|CAR60997.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 243 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|121602013|ref|YP_988622.1| hypothetical protein BARBAKC583_0300 [Bartonella bacilliformis KC583] gi|120614190|gb|ABM44791.1| conserved hypothetical protein TIGR00046 [Bartonella bacilliformis KC583] Length = 247 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 106/226 (46%), Positives = 143/226 (63%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + +RLF+ PL + + G Q YL HVLRM+EG ILLFNG DGEWL+++ Sbjct: 1 MRANYKFQRLFIQQPLVLNAEVIIEGSQASYLIHVLRMREGARILLFNGCDGEWLAELIT 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ +Q R QT +SD+ Y F+PIK+ RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 IKKKIVVVRIIHQERVQTVRSDLVYCFAPIKSARLDYMVQKAVEMGVSVLQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+L P +LE LL +WD + F DE+ N L Sbjct: 121 TRINMARIEANIIEASEQCGILSLSECAPTVSLEALLTSWDEARPLFFCDESHEFHNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L +P V +LIGPEGG+ EE+ L PFV P+SLGPRILR Sbjct: 181 LLKKYRAMP-VGVLIGPEGGFSEEERILLKKYPFVVPISLGPRILR 225 >gi|194442934|ref|YP_002042353.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194737195|ref|YP_002116042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195873572|ref|ZP_02697636.2| protein YggJ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197300804|ref|ZP_02661220.2| protein YggJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204928270|ref|ZP_03219470.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357183|ref|ZP_02345767.2| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205359187|ref|ZP_02667829.2| protein YggJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360780|ref|ZP_02686433.2| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224584887|ref|YP_002638686.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909892|ref|ZP_04653729.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161365422|gb|ABX69190.1| hypothetical protein SPAB_03859 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401597|gb|ACF61819.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408317|gb|ACF68536.1| protein YggJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712697|gb|ACF91918.1| protein YggJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633273|gb|EDX51687.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197290907|gb|EDY30261.1| protein YggJ [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322592|gb|EDZ07789.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323264|gb|EDZ11103.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338220|gb|EDZ24984.1| protein YggJ [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347043|gb|EDZ33674.1| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469415|gb|ACN47245.1| hypothetical protein SPC_3159 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322613491|gb|EFY10432.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621083|gb|EFY17941.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624147|gb|EFY20981.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628114|gb|EFY24903.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633233|gb|EFY29975.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636189|gb|EFY32897.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639527|gb|EFY36215.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647540|gb|EFY44029.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648724|gb|EFY45171.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653779|gb|EFY50105.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657885|gb|EFY54153.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663988|gb|EFY60187.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669001|gb|EFY65152.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673005|gb|EFY69112.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678004|gb|EFY74067.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681180|gb|EFY77213.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687890|gb|EFY83857.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194914|gb|EFZ80101.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196665|gb|EFZ81813.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202635|gb|EFZ87675.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207878|gb|EFZ92824.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212570|gb|EFZ97387.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214947|gb|EFZ99695.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222677|gb|EGA07042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225420|gb|EGA09652.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230565|gb|EGA14683.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235084|gb|EGA19170.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239123|gb|EGA23173.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244519|gb|EGA28525.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247134|gb|EGA31100.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253383|gb|EGA37212.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256310|gb|EGA40046.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262514|gb|EGA46070.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267390|gb|EGA50874.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269206|gb|EGA52661.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 259 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251 Query: 238 QAICGD 243 Q GD Sbjct: 252 QVRFGD 257 >gi|168826710|gb|ACA32081.1| protein of unknown function DUF558 [Haemophilus somnus 2336] Length = 272 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 13/248 (5%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + + R++ L + + S D +++ VLRM+ G+ I LF+G + + + I+ K Sbjct: 27 NMRIPRIYHPTSLENQQTCQLSDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNK 86 Query: 64 SIRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 Q ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 87 KAIEVNILSRQLDNRESPLFIHLGQVISRGERMEFTIQKSVELGVNIITPLWSERCGVKL 146 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + + ISA EQC +P I P L+ D ++ + Sbjct: 147 DKDRMEKKIQQWQKIAISACEQCGRNIVPEIRPLMKLQDWCAEQDGTLKLNLHPRAKYTI 206 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L ++ V +LIGPEGG ++E + F T + LG R+LR++T A++A+ Sbjct: 207 RTLPEI----PPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAIT 261 Query: 236 LVQAICGD 243 +Q GD Sbjct: 262 ALQVCFGD 269 >gi|161353586|ref|NP_462010.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267995259|gb|ACY90144.1| hypothetical protein STM14_3738 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 243 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|126740599|ref|ZP_01756286.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6] gi|126718400|gb|EBA15115.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6] Length = 261 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 131/252 (51%), Gaps = 16/252 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL + DQ HYL V+R G ++ LFNG+DGEW ++IS GK Sbjct: 10 RLYVEHPLGVGQSIPLEKDQAHYLFGVMRQALGGHVALFNGRDGEWQAEISEAGKRGGTL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 QS+ D+ IF+PIK R D++++K+ EMG I PV T YT + DR+ Sbjct: 70 TCIEQSKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGAAKILPVGTEYTNSERIRQDRL 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L LL +W Q++F DE + L Sbjct: 130 QAHAVEAAEQCGGTYVPEVCDLQKLSRLLDDWPAKRQLMFCDEAEVGQQRFLDLTQGGGT 189 Query: 188 ---------------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 AILIGPEGG+ +E++ LH++ +SLGPRILR+DTAAVA Sbjct: 190 GADRSASEPVPGAVSQPWAILIGPEGGFSDKERKRLHAMEQAHVVSLGPRILRADTAAVA 249 Query: 233 AMALVQAICGDW 244 AM + Q GDW Sbjct: 250 AMTVWQQTLGDW 261 >gi|329998571|ref|ZP_08303168.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3] gi|328538642|gb|EGF64741.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3] Length = 243 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 2 RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P LE D ++ S N+ Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|197263143|ref|ZP_03163217.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388493|ref|ZP_03215105.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205357558|ref|ZP_02571479.2| protein YggJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16421647|gb|AAL21969.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241398|gb|EDY24018.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199605591|gb|EDZ04136.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331209|gb|EDZ17973.1| protein YggJ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248225|emb|CBG26062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159649|emb|CBW19168.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914116|dbj|BAJ38090.1| 16S rRNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225767|gb|EFX50821.1| Ribosomal RNA small subunit methyltransferase E [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131450|gb|ADX18880.1| protein YggJ [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989961|gb|AEF08944.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 259 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251 Query: 238 QAICGD 243 Q GD Sbjct: 252 QVRFGD 257 >gi|238785646|ref|ZP_04629623.1| Ribosomal RNA small subunit methyltransferase E [Yersinia bercovieri ATCC 43970] gi|238713425|gb|EEQ05460.1| Ribosomal RNA small subunit methyltransferase E [Yersinia bercovieri ATCC 43970] Length = 253 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL ++ S + +++ VLRM EG ++ LF+G + + +KI K Sbjct: 12 RIPRIYHPQPLQANSELALSDEAANHVGRVLRMAEGQSLQLFDGSNQVFDAKIIRADKKS 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + ++S + + + ++++ +QKS+E+G+ I P+ + Sbjct: 72 LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 131 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC T+P I L D + ++ S N+ Sbjct: 132 ERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLADWCAEQDDSLKLNLHPRASNSINT 191 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 192 LP-----PSLNKVRLLIGPEGGLSADEITMTSRLGF-TDILLGPRVLRTETTALTAITAL 245 Query: 238 QAICGD 243 Q GD Sbjct: 246 QVRFGD 251 >gi|125973834|ref|YP_001037744.1| hypothetical protein Cthe_1319 [Clostridium thermocellum ATCC 27405] gi|281417994|ref|ZP_06249014.1| protein of unknown function DUF558 [Clostridium thermocellum JW20] gi|125714059|gb|ABN52551.1| protein of unknown function DUF558 [Clostridium thermocellum ATCC 27405] gi|281409396|gb|EFB39654.1| protein of unknown function DUF558 [Clostridium thermocellum JW20] gi|316939970|gb|ADU74004.1| protein of unknown function DUF558 [Clostridium thermocellum DSM 1313] Length = 247 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 9/245 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV SG+ ++++ VLR+ +GD + + +G+ ++L +I + ++ Sbjct: 1 MPRFFVRKSDIYGDFINISGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDAVI 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE + V K++++DY+IQK+VE+G+ I PVIT T + Sbjct: 61 NTRIVEAMKNATEPPLKVTLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +R ++ AA+QC+ +P + P + + L N + + E Sbjct: 121 SGSKKYERWNRISMEAAKQCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIKLK 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + + + V++ IGPEGG+ E ET S + P++LGPRILR++TA +A ++++ Sbjct: 181 EVLSSSSSVEKVSVFIGPEGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSILM 239 Query: 239 AICGD 243 GD Sbjct: 240 YELGD 244 >gi|327395101|dbj|BAK12523.1| hypothetical UPF0088 protein YggJ [Pantoea ananatis AJ13355] Length = 243 Score = 271 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ + ++ D ++ VLRM G ++ LF+G + + ++I++V K Sbjct: 2 RIPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKKR 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S+ ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ++A EQC +P I P LE + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|330886230|gb|EGH20131.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. mori str. 301020] Length = 239 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+G I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A LIGPEGG + E + + F LGPR+LR++TA A+++ Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGF-HAARLGPRVLRTETAPAVALSVA 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QQLWGDF 239 >gi|300024089|ref|YP_003756700.1| hypothetical protein Hden_2583 [Hyphomicrobium denitrificans ATCC 51888] gi|299525910|gb|ADJ24379.1| protein of unknown function DUF558 [Hyphomicrobium denitrificans ATCC 51888] Length = 248 Score = 271 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67 RLF+ L + + Q HYL +VLR++ G +L+FNG+DGEW + I ++ Sbjct: 10 RLFIADDLAAGVSVELAQQQAHYLTNVLRLRPGAKLLVFNGRDGEWQASLIESRKRTTVL 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +E Q+R Q + D+ Y+F+P+K +RLDYM+QK+ EMG+ +RPVIT T N +R+ Sbjct: 70 GIEEQTRPQEQGPDIDYLFAPLKRSRLDYMVQKATEMGVRRLRPVITERTIAERVNSERM 129 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQC IL +P + PP +LE L WD +++ DE + + + L + Sbjct: 130 LANAIEAAEQCGILRVPEVEPPVSLETALAAWDPARALIYCDEHETAADPIATLRKVPAG 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P VA+LIGPEGG+ + E+ L + +V PL LGPRI+R+DTAAVAA+ LV A+ GDW Sbjct: 190 P-VAVLIGPEGGFSNGERSRLLANSYVVPLPLGPRIMRADTAAVAALTLVNAVLGDW 245 >gi|262042596|ref|ZP_06015752.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040030|gb|EEW41145.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 243 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 2 RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P LE D ++ S N+ Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLETWCAEQDSGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|237816954|ref|ZP_04595946.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|297249441|ref|ZP_06933142.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus bv. 5 str. B3196] gi|237787767|gb|EEP61983.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|297173310|gb|EFH32674.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus bv. 5 str. B3196] Length = 285 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 38 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 98 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMA---- 272 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 273 ------LVQAVLGDW 281 >gi|152971897|ref|YP_001337006.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956746|gb|ABR78776.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 243 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ L + +Q S D +++ VLRM G ++ LF+G + + + I+ GK Sbjct: 2 RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VTAEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ +P I P LE D ++ S N+ Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|301154799|emb|CBW14262.1| predicted protein [Haemophilus parainfluenzae T3T1] Length = 244 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L ++ + S D +++ VLRM EG+ I LF+G + + +KI K Sbjct: 2 RIPRIYHPKSLKNQSTCQLSEDAANHVGRVLRMTEGEQIELFDGSNHIYPAKIIEASKKA 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 K+S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPLWSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGALKLNLHPRAQYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPSI----PKEGVRLLIGSEGGLSPQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|77464587|ref|YP_354091.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides 2.4.1] gi|77389005|gb|ABA80190.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 257 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 14/250 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL + DQ HYL V+R+ G + LFNG+DGEW ++++ GK Sbjct: 7 RLYVEQPLGPGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+ D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 LCKDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177 + + + AAEQC +P + T LE LL +W + +I++ DE+ + Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGLLEAAGGFE 186 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+ AILIGPEGG+ EE+ L + V P+SLGPRILR+DTAAVAA+ Sbjct: 187 ARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVAAL 246 Query: 235 ALVQAICGDW 244 L Q++ GDW Sbjct: 247 TLWQSVLGDW 256 >gi|291618768|ref|YP_003521510.1| YggJ [Pantoea ananatis LMG 20103] gi|291153798|gb|ADD78382.1| YggJ [Pantoea ananatis LMG 20103] Length = 243 Score = 271 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 115/246 (46%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ + ++ D ++ VLRM G ++ LF+G + + ++I++V K Sbjct: 2 RIPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKKR 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S+ ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ++A EQC +P I P LE + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSTDEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|148558128|ref|YP_001257708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ovis ATCC 25840] gi|225629236|ref|ZP_03787269.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|148369413|gb|ABQ62285.1| conserved hypothetical protein TIGR00046 [Brucella ovis ATCC 25840] gi|225615732|gb|EEH12781.1| conserved hypothetical protein [Brucella ceti str. Cudo] Length = 285 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 38 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 98 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 158 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 272 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 273 ------LVQAVLGDW 281 >gi|90415442|ref|ZP_01223376.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium HTCC2207] gi|90332765|gb|EAS47935.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium HTCC2207] Length = 245 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 18/249 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F D PL SG +L+ LRM G I LFNG GE+ + ++ KS Sbjct: 2 RIPRIFTDQPLSSGANLALSGSAARHLSSALRMSAGQEITLFNGLGGEFSATLTRATKSQ 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + +++ + ++ + + R+D+++QK+ E+G+ I P+ + T Sbjct: 62 VDVSIGDFRDIDRESPLNLHLAIAVSRGERMDWIVQKATELGVSEITPLFSERTEVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGS 174 + + + +ISA EQC +P I P TL+ L ++V + S Sbjct: 122 ERLEKKLRHWQQVSISACEQCQRNLVPSINPALTLDQWLSQDTGNAEQLKLVLHHRSDKS 181 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + +L+GPEGG E F L+LGPR++R++TA +AA+ Sbjct: 182 ------LAQHQPPKSACLLVGPEGGLSDNEISRAMDNGFA-ALTLGPRVMRTETAPLAAI 234 Query: 235 ALVQAICGD 243 +++Q++ GD Sbjct: 235 SIMQSVWGD 243 >gi|326410911|gb|ADZ67975.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M28] gi|326554202|gb|ADZ88841.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M5-90] Length = 285 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 38 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 98 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 157 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 272 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 273 ------LVQAVLGDW 281 >gi|109899639|ref|YP_662894.1| hypothetical protein Patl_3334 [Pseudoalteromonas atlantica T6c] gi|109701920|gb|ABG41840.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudoalteromonas atlantica T6c] Length = 242 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ L + + D +++A+VLR K G ++LFNG E+ + V K Sbjct: 2 RISRIYHPDTLHPDQELSLTPDASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRK 61 Query: 65 IRFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R +++ + S S + + +R+D+++QKSVE+G+ I P+IT Sbjct: 62 VRVQIDAKLSMSLESPLSIHLGQGVSRGDRMDWVLQKSVELGVTEITPLITERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + + I+A EQC LP ++ P + + ++ S Sbjct: 122 QRWQKKHAQWQKIIIAACEQCGRNVLPVLHMPMDFQSWVNQSTQALRLALHPRAEKSFR- 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 H V +LIGPEGG+ +E F T + LGPR+LR++TAA+ A++ + Sbjct: 181 ----HTSVGKDGVRLLIGPEGGFSDQELYQTEQGGFQT-VQLGPRVLRTETAAITAISAL 235 Query: 238 QAICGD 243 QAI GD Sbjct: 236 QAIYGD 241 >gi|261867348|ref|YP_003255270.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412680|gb|ACX82051.1| hypothetical protein D11S_0649 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 244 Score = 271 bits (693), Expect = 8e-71, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL T S D +++ VLRM+ GD + LF+G + + + I+ V K Sbjct: 2 RVPRIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVAKKS 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + Q + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VEVDILSRQFDDRESPLAIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ + ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAEPNDALKLNLHPRARYSIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L ++ A V +LIG EGG +E FV + LG R+LR++TAA+AA+ + Sbjct: 182 LPEIPAA----GVRLLIGSEGGLSPQEIAQTEQQGFV-DVLLGKRVLRTETAAMAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|88859066|ref|ZP_01133707.1| putative RNA methyltransferase with a deep trefoil knot [Pseudoalteromonas tunicata D2] gi|88819292|gb|EAR29106.1| putative RNA methyltransferase with a deep trefoil knot [Pseudoalteromonas tunicata D2] Length = 243 Score = 271 bits (693), Expect = 8e-71, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + ++ + I + D ++ VLRM GD + LFNG+ G++L++++ V K Sbjct: 2 RIPHIYHPGSIEIGQILQLDDDAAGHIGRVLRMSIGDKVCLFNGQGGQFLAELTEVSKKG 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++E ++ + + +++D+ IQKSVE+G+ I P+ T Sbjct: 62 VNVQIESFEEHDVESPLKIHLGQGISRGDKMDFTIQKSVELGVTEITPLFTERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+AAEQ + I+PP LE L ++ S + Sbjct: 122 DRLEKKHQQWQKIAIAAAEQSGRNFVTVIHPPIKLEQWLSQQSDELKLTLHPRAEHSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + K + ++GPEGG+ E + F+ + LGPRILR++TAA+ ++ + Sbjct: 182 ITK-----PTEGLRFIVGPEGGFTDAEMLMTKNSGFI-DIRLGPRILRTETAALTVLSAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLEFGD 241 >gi|238763255|ref|ZP_04624220.1| Ribosomal RNA small subunit methyltransferase E [Yersinia kristensenii ATCC 33638] gi|238698528|gb|EEP91280.1| Ribosomal RNA small subunit methyltransferase E [Yersinia kristensenii ATCC 33638] Length = 243 Score = 271 bits (693), Expect = 8e-71, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL T+ S + +++ VLRM EG ++ LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I E Q + ++ + ++++ +QKS+E+G+ I P+ + Sbjct: 62 LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPLFSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I L + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLADWCAEQGDSLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ + Sbjct: 182 LP-----SSLSKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|319408122|emb|CBI81775.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 247 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 105/226 (46%), Positives = 146/226 (64%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+++ +RLF+ PL + + + G Q YL HVLRMKEG ILLFNG+DGEWL+KI+ Sbjct: 1 MRVNYKFQRLFIQQPLSLNREIEIEGAQVSYLVHVLRMKEGAQILLFNGQDGEWLAKITA 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ +Q+R QT SD+ Y F+P+K RLDYM+QK VEMG+ ++PVIT +TQ Sbjct: 61 IKKKFVVVQLIHQTRPQTTCSDLIYCFAPLKHARLDYMVQKVVEMGVSILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + NM R++ I AAEQC IL+LP P +L+ LL +WD + F DE+ +N L Sbjct: 121 SRINMARIKANIIEAAEQCGILSLPECLPAVSLKTLLAHWDKTHSLFFCDESHEIQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L +P + +LIGPEGG+ EE+ L FV +SLGPRILR Sbjct: 181 LLKKHGTVP-LGVLIGPEGGFSEEEQVLLRKHSFVISISLGPRILR 225 >gi|229007176|ref|NP_353680.3| hypothetical protein Atu0657 [Agrobacterium tumefaciens str. C58] Length = 245 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 151/226 (66%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLF++ L +A+G+Q++YLA+VLRM +G ILLFNG+DGEW +K+S+ Sbjct: 1 MRANFRMQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSF 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q+R Q +++ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKKISLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +N +++R I AAEQC IL+LP + P L+ +L+ W + +I++ DE +N L Sbjct: 121 KIHNSEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L A+ +A+L+GPEGG+ EE+ L SL FVTP+ LGPRILR Sbjct: 181 ILQAVKE-RKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILR 225 >gi|149202038|ref|ZP_01879011.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035] gi|149144136|gb|EDM32167.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035] Length = 243 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 90/237 (37%), Positives = 129/237 (54%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL + Q HYL V+R GD +LLF+G+ GEW + + GK Sbjct: 7 RLYVEHPLGEGQTIPLTQPQAHYLFGVMRQGVGDAVLLFDGRHGEWRADVIEAGKRGGVL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T DR+ Sbjct: 67 QVAEQTAPQRDPPDLWLLFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNAERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ +L +W + Q++F DE + + Sbjct: 127 QAHAVEAAEQCGGTFVPEVGDLHRLDRMLADWPKDRQLMFCDEGLAGH-AATLAGDLPRG 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L +LP +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 186 APWAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQRALGDW 242 >gi|117617899|ref|YP_857627.1| hypothetical protein AHA_3127 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559306|gb|ABK36254.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 243 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + S D +++ VLRM+ G + LFNG ++ + I+ VGK Sbjct: 2 RIPRIYEPAALQVGQTLALSEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKS 61 Query: 66 RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + S + + +++D+ IQKSVE+G+ I P+ + Sbjct: 62 VEVTIDRCDTHSVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERCGVKLPA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ + ISA EQC T+P + P L+ L + ++ S N+ Sbjct: 122 DRLEKKREQWQKVVISACEQCGRNTVPEVRMPMELDAWLAEETNELKLNLHPRAPYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L V +LIGPEGG S+E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPI-----PEHGVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QCRFGD 241 >gi|157372259|ref|YP_001480248.1| hypothetical protein Spro_4025 [Serratia proteamaculans 568] gi|157324023|gb|ABV43120.1| protein of unknown function DUF558 [Serratia proteamaculans 568] Length = 243 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + S D +++ VLRM G + LF+G + + + I+ V K Sbjct: 2 RIPRIYHPQPLIDHAEIFLSEDAANHIGRVLRMNAGQALQLFDGSNQVFDAVIAQVDKKS 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ Q + ++ + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VQVQLSAGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPLFSERCGVALSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I LE D + ++ S N+ Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRIPEIREAMQLEAWCAEQDGSLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + NV +LIGPEGG + E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVENVRLLIGPEGGLSTGEIAMTTGHGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|161936292|ref|YP_131254.2| 16S ribosomal RNA methyltransferase RsmE [Photobacterium profundum SS9] Length = 243 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + + S D +++ V+RM+ G +LLF+G D E+ + IS K Sbjct: 2 RIPRIYHPELLPSQGKVMLSDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK- 60 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +V+ Q R++ ++ + ++++ IQKSVE+G+ I P+I+ Sbjct: 61 NVEVDIQCRNENSIESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERCGVKLN 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + ++A EQC +P I P LE ++ S N Sbjct: 121 AERFEKKLSQWQKIVVAACEQCGRNVIPEIRPVMKLEDWCAEEYDGLKLNLHPRANYSIN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIGPEGG +EE F + LGPR+LR++T A+ A+ Sbjct: 181 TLPE-----PVTKVRLLIGPEGGLSAEEISMTEQYKFDE-ILLGPRVLRTETTAMTAITA 234 Query: 237 VQAICGD 243 +Q GD Sbjct: 235 LQVRFGD 241 >gi|269137637|ref|YP_003294337.1| hypothetical protein ETAE_0279 [Edwardsiella tarda EIB202] gi|267983297|gb|ACY83126.1| conserved hypothetical protein [Edwardsiella tarda EIB202] gi|304557702|gb|ADM40366.1| Ribosomal RNA small subunit methyltransferase E [Edwardsiella tarda FL6-60] Length = 243 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL I + D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIISADKKS 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ + Q + + + ++++ IQKS+E+G+ I P+I+ Sbjct: 62 VRVRLNHVQEADRESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERCGVRLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERMAKKQQQWQKIAIAACEQCGRNRIPQIRPAMDLEAWCAEEDDCLRLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG + E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPQ-----PLTRVRLLIGPEGGLSAAEIAMTADYRF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|116250629|ref|YP_766467.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum bv. viciae 3841] gi|115255277|emb|CAK06352.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 147/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ DQ++YL +VLRM+EG ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSSGAVVEANADQFNYLGNVLRMEEGAEILLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q + D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC IL +P + P L LL +W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGILGIPDVAEPVRLLDLLDHWPSERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225 >gi|330721278|gb|EGG99366.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC2047] Length = 241 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 16/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F+D PL Q + + HYL VLR+ + +FNG+ GE+ ++I K+ Sbjct: 2 RIPRIFIDLPLNEHQQVELPRETSHYLNRVLRLPVDAQLRVFNGQGGEYQAQICAANKNA 61 Query: 66 RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + + + K +R+D+++QK+ E+G+ I + + T Sbjct: 62 VSLAIGAFSAEDNSSPLHIHLGIALSKGDRMDFVVQKATELGIKEISLLYSERTEVKLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ISA EQC +P I+ PT L L+ +++ + Sbjct: 122 EREEKRLQHWQKVAISACEQCASNHVPTIHAPTPLNQWLEERHETVKLI-------MQPG 174 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ + VA+L+GPEGG+ E + F LSLGPRILR++TA + A++++ Sbjct: 175 TDQPFKQDNPGKVALLVGPEGGFSESEVNAANQAGFNN-LSLGPRILRTETAPLVAISIL 233 Query: 238 QAICGD 243 Q GD Sbjct: 234 QHHWGD 239 >gi|167622641|ref|YP_001672935.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella halifaxensis HAW-EB4] gi|167352663|gb|ABZ75276.1| protein of unknown function DUF558 [Shewanella halifaxensis HAW-EB4] Length = 243 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ + L I + ++ VLRM G+ + LFNG ++L++I K Sbjct: 2 RVPRIYQESSLVIGQAVALDDEAAGHVGRVLRMSVGEQVSLFNGDGNDYLAEIISASKKN 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++ + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 VEVKVLSCEANNSESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + +SA EQ +P I P L ++ N Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSVVPVIRPAMQLSDWCAEPSDAVKLNLHPRASHGVNG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L V ++IGPEGG + E F T + LGPR+LR++TAA+ ++ + Sbjct: 182 LTL-----PNNRVRLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|33152802|ref|NP_874155.1| hypothetical protein HD1793 [Haemophilus ducreyi 35000HP] gi|33149026|gb|AAP96544.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 243 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL +T S D +++ VLRM G+ I+LF+G + + + + V K Sbjct: 2 RIPRIYHPEPLKNQTSCSLSEDATNHIGRVLRMNVGEKIILFDGSNHIFHAVLETVQKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IQVKILHSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKIITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC+ +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCERNQVPQIRPIMKLTDWCKEQDEMLKLNLHPRAKYTIRQ 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L ++ V +LIG EGG +EE + F T + LG R+LR++TA++AA+ + Sbjct: 182 LPQI----PTAGVRLLIGSEGGLSAEEIAMTENQGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|163749088|ref|ZP_02156338.1| hypothetical protein KT99_19644 [Shewanella benthica KT99] gi|161331158|gb|EDQ02047.1| hypothetical protein KT99_19644 [Shewanella benthica KT99] Length = 242 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ D PL I + ++ VLRM G+ I LFNG D ++L++I K Sbjct: 2 RIPRIYQDSPLVIGDSLALHDEAASHIGRVLRMTPGEQISLFNGSDHDYLAEIISASKKN 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I KV + + + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 ISVKVLSSNTNASESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ++A EQ +P I P +LE + ++ Sbjct: 122 DRLEKKRQQWQKIVVAACEQSGRSRVPEIRPAMSLEAWCGEPTDSLKLNLHPRAAHGIGG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG E F T + LGPR+LR++TAA+ A++ + Sbjct: 182 LPL-----EVAKVRLLIGPEGGLSDTEILQTEQDEF-TDILLGPRVLRTETAALTAISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|194472615|ref|ZP_03078599.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248239|ref|YP_002148008.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245476|ref|YP_002217069.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205358823|ref|ZP_02659413.2| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359716|ref|ZP_02831876.2| protein YggJ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|207858355|ref|YP_002245006.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194458979|gb|EDX47818.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211942|gb|ACH49339.1| protein YggJ [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939992|gb|ACH77325.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205331705|gb|EDZ18469.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343320|gb|EDZ30084.1| protein YggJ [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206710158|emb|CAR34514.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087526|emb|CBY97291.1| Ribosomal RNA small subunit methyltransferase E 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|326624841|gb|EGE31186.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 259 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251 Query: 238 QAICGD 243 Q GD Sbjct: 252 QVRFGD 257 >gi|223042063|ref|ZP_03612239.1| hypothetical protein AM202_0654 [Actinobacillus minor 202] gi|223017138|gb|EEF15574.1| hypothetical protein AM202_0654 [Actinobacillus minor 202] Length = 243 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL KT S D +++ VLRM G+ I LF+G + + + + V K Sbjct: 2 RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQITLFDGSNHVFHATLQAVEKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG EE F T + LG R+LR++TA++AA+ + Sbjct: 182 LPNMPAA----GVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|163803743|ref|ZP_02197601.1| hypothetical protein 1103602000580_AND4_13698 [Vibrio sp. AND4] gi|159172462|gb|EDP57330.1| hypothetical protein AND4_13698 [Vibrio sp. AND4] Length = 243 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + D ++ VLRMKEG ++LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPETIQQLGTIVVREDAASHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + +S + F + + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VLVELSERTENSIESPLDLHFGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE + ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNIVPEIRPIMSLEAWCQEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG E + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVKKVRLLIGPEGGLSCSEIDMTREYQFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|330501385|ref|YP_004378254.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] gi|328915671|gb|AEB56502.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] Length = 239 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 17/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F+D PL + + Q HY+ VLR GD + LF+G E+L ++ VGK Sbjct: 2 RLSRFFIDAPLSLGQH-ELPEAQAHYIGRVLRHAVGDAVQLFDGSGQEYLGELIEVGKKS 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ E + + + R+D+ IQK+ E+G I P+++ Sbjct: 61 VRVELRESIAGLAESPLRIHLGQGLSRGERMDWAIQKATELGASEITPIVSTRCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + M R ISA EQC LP I+ P L+ L+ + + ++V Sbjct: 121 ERADKRMAHWRQVAISACEQCGRSVLPLIHAPLELDAWLQQIEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E A +A LIGPEGG E + F LGPR+LR++TA V A+++ Sbjct: 174 AEPWVGHAPPRALAFLIGPEGGLSDAEVDQAKGAGF-HAARLGPRVLRTETAPVVALSVA 232 Query: 238 QAICGD 243 Q + GD Sbjct: 233 QQLWGD 238 >gi|229220845|ref|YP_223253.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 1 str. 9-941] gi|229358031|ref|YP_418671.2| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis biovar Abortus 2308] gi|229597252|ref|YP_001932396.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus S19] gi|254690902|ref|ZP_05154156.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 6 str. 870] gi|254695788|ref|ZP_05157616.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 3 str. Tulya] gi|254698683|ref|ZP_05160511.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 2 str. 86/8/59] gi|254732130|ref|ZP_05190708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 4 str. 292] gi|256256087|ref|ZP_05461623.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 9 str. C68] gi|260544638|ref|ZP_05820459.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260097909|gb|EEW81783.1| conserved hypothetical protein [Brucella abortus NCTC 8038] Length = 248 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|146312989|ref|YP_001178063.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter sp. 638] gi|145319865|gb|ABP62012.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter sp. 638] Length = 243 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + ++ S D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPELITAGSEIALSDDAANHVGRVLRMGAGQAVQLFDGSNQVFDAEITRADKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VQVSILRGEVDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I PP LE + ++ S N+ Sbjct: 122 ERLNKKIQQWQKIAIAACEQCGRNRIPEIRPPMDLEAWCAEEESGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|323493586|ref|ZP_08098707.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG 20546] gi|323312109|gb|EGA65252.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG 20546] Length = 243 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + S + ++ VLRMKE +LLF+G E+ + IS V K Sbjct: 2 RIPRIYHPETITQLGSLMLSEEAAGHVGRVLRMKEEQQVLLFDGSGAEFPATISEVSKKS 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VEVNVIERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDH 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNTVPEIRPIMQLEEWCGEEYDGLKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE + F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSAEEISMTENYKFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|75676748|ref|YP_319169.1| hypothetical protein Nwi_2564 [Nitrobacter winogradskyi Nb-255] gi|74421618|gb|ABA05817.1| Conserved hypothetical protein 46 [Nitrobacter winogradskyi Nb-255] Length = 257 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 104/243 (42%), Positives = 147/243 (60%), Gaps = 1/243 (0%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 I RL+VD PL + + +Q +YL +VLR+ G N+L+FNG+DGEW + IS Sbjct: 6 IDFRSPRLYVDAPLAAGNRVPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAISGRK 65 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + ++ +R Q DV Y F+P+K RLDYM+QK+VEMG A++PV+TR+TQ Sbjct: 66 RPEHLEIVAATRKQDHLRDVHYAFAPLKHARLDYMVQKAVEMGASALQPVLTRFTQVGRV 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N +R+R I AAEQC IL+L + P L+ L +VF DE + N + L Sbjct: 126 NGERMRANVIEAAEQCGILSLAAVEEPAQLDRWLGRRAGERLLVFCDEAASTANPVRALE 185 Query: 183 AIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + + +L+GPEGG+ E+E L + P + LSLGPRILR+DTAAVA +ALVQ + Sbjct: 186 TVRSVARGIDVLVGPEGGFADNERENLLNQPNILRLSLGPRILRADTAAVAVLALVQTVL 245 Query: 242 GDW 244 GDW Sbjct: 246 GDW 248 >gi|256111326|ref|ZP_05452352.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 3 str. Ether] gi|265992832|ref|ZP_06105389.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262763702|gb|EEZ09734.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 248 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 150/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + + L WD + +++F DE S++ L Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCWEALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|16761869|ref|NP_457486.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143356|ref|NP_806698.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|291084775|ref|ZP_06542159.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25345391|pir||AF0877 conserved hypothetical protein STY3247 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504171|emb|CAD02918.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138990|gb|AAO70558.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 243 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|213023350|ref|ZP_03337797.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163039|ref|ZP_03348749.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424112|ref|ZP_03357005.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580648|ref|ZP_03362474.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612784|ref|ZP_03370610.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648200|ref|ZP_03378253.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850166|ref|ZP_03381064.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828647|ref|ZP_06546457.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 259 Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINT 197 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251 Query: 238 QAICGD 243 Q GD Sbjct: 252 QVRFGD 257 >gi|254699975|ref|ZP_05161803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 5 str. 513] gi|254710992|ref|ZP_05172803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis B2/94] gi|254712536|ref|ZP_05174347.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M644/93/1] gi|254715608|ref|ZP_05177419.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M13/05/1] gi|256029374|ref|ZP_05442988.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis M292/94/1] gi|256059062|ref|ZP_05449271.1| 16S ribosomal RNA methyltransferase RsmE [Brucella neotomae 5K33] gi|256157566|ref|ZP_05455484.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M490/95/1] gi|256253459|ref|ZP_05458995.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti B1/94] gi|260167538|ref|ZP_05754349.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. F5/99] Length = 248 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|332559480|ref|ZP_08413802.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides WS8N] gi|332277192|gb|EGJ22507.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides WS8N] Length = 257 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 138/250 (55%), Gaps = 14/250 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL + DQ HYL V+R+ G + LFNG+DGEW ++++ GK Sbjct: 7 RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 LCTHRTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177 + + + AAEQC +P + T LE LL +W + +I++ DE+ + Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGLLEAAGGFE 186 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+ AILIGPEGG+ EE+ L + V P+SLGPRILR+DTAAVAA+ Sbjct: 187 ARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVAAL 246 Query: 235 ALVQAICGDW 244 L Q++ GDW Sbjct: 247 TLWQSVLGDW 256 >gi|294675943|ref|YP_003576558.1| hypothetical protein RCAP_rcc00386 [Rhodobacter capsulatus SB 1003] gi|294474763|gb|ADE84151.1| protein of unknown function DUF558, methyltransferase predicted [Rhodobacter capsulatus SB 1003] Length = 241 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 4/237 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL V PL S DQ +YL V+R+ GD + LFNG+DGEW +++ K Sbjct: 7 RLCVTHPLGPGQAVPLSPDQANYLFAVMRLGPGDRVALFNGRDGEWTAEVVEGSKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q D+ +F+PIK R D++++K+ E+G I PV T +T DR+ Sbjct: 67 ACLGLAAPQLNPPDLWLLFAPIKKERTDFIVEKAAELGCAKILPVQTEFTNAARIKQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + L+ +LK+W+ +I++ DE+ + L +A Sbjct: 127 QAHALEAAEQCLGTYVPEVSDLQPLQKVLKSWNPARRILWGDESLVG--PAQTLAGLAPG 184 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AIL+GPEGG+ E+ L +LPFVTP+SLGPRILR+DTAA AA+ L Q+ GDW Sbjct: 185 P-WAILVGPEGGFSETERHQLRALPFVTPVSLGPRILRADTAACAAITLWQSSLGDW 240 >gi|37525153|ref|NP_928497.1| hypothetical protein plu1185 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784579|emb|CAE13479.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 243 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L T+ S + +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRVYHPELLSSNTEIYLSDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAQITEASKKS 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ + + + ++ + ++++ IQKSVE+G+ I P+I+ Sbjct: 62 VKVHISNSELADNESPLNLHLGQVISRGEKMEFTIQKSVELGVNVITPLISERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE D + ++ S N+ Sbjct: 122 ERLAKKLQQWQKIAIAACEQCCRNRVPEIRPVMQLEHWCAENDGSLKLNLHPRASQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +E + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVEKVRLLIGPEGGLSIDEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|330830726|ref|YP_004393678.1| hypothetical protein B565_3026 [Aeromonas veronii B565] gi|328805862|gb|AEB51061.1| hypothetical protein B565_3026 [Aeromonas veronii B565] Length = 243 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + S D +++ VLRM+ G + LFNG ++ + I+ VGK Sbjct: 2 RIPRIYEPATLQVGQTIALSEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKS 61 Query: 66 RFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q + + +++D+ IQKSVE+G+ I P+ + Sbjct: 62 VEVTIDSCDVQSVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERCGVKLPA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ + ISA EQC +P + P L+ L ++ S N+ Sbjct: 122 DRLEKKREQWQKVVISACEQCGRNVVPEVRMPIELDAWLAEETKELKLNLHPRAEYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L V +LIGPEGG S+E F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPV-----PEHGVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QCRFGD 241 >gi|254360572|ref|ZP_04976721.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213] gi|153091112|gb|EDN73117.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213] Length = 243 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL S D +++ VLRMK+G+ I+LF+G + + + + V K Sbjct: 2 RIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRE 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +EE S F T + LG R+LR++TA++AA+ + Sbjct: 182 LPNV----PKAGVRLLIGSEGGLSAEEIAMTESEGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|126463427|ref|YP_001044541.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides ATCC 17029] gi|126105091|gb|ABN77769.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC 17029] Length = 257 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 137/250 (54%), Gaps = 14/250 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL + DQ HYL V+R+ G + LFNG+DGEW ++++ GK Sbjct: 7 RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAETGKRGGTL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+ D+ +F+PIK R D++++K+ EMG I PV TR+T + DR+ Sbjct: 67 LCTDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177 + + + AAEQC +P + T LE LL +W + +I++ DE+ + Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGLLEAAGGFE 186 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+ AILIGPEGG+ EE+ L + V P+SLGPRILR+DTAAVAA+ Sbjct: 187 ARGFEEGPKRPSPRPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVAAL 246 Query: 235 ALVQAICGDW 244 L Q++ GDW Sbjct: 247 TLWQSVLGDW 256 >gi|283788532|ref|YP_003368397.1| hypothetical protein ROD_50401 [Citrobacter rodentium ICC168] gi|282951986|emb|CBG91713.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 243 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R++ P+ TQ D ++ VLRM G + LF+G + + ++I K Sbjct: 2 RTPRIYHPEPVTPGTQISLCEDAANHTGRVLRMGPGQPLQLFDGSNQVFDAEIVLASKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLRGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASDSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|254705760|ref|ZP_05167588.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis M163/99/10] Length = 248 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRXPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|240949405|ref|ZP_04753746.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305] gi|240296154|gb|EER46810.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305] Length = 243 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL KT S D +++ VLRM G+ I+LF+G + + + + V K Sbjct: 2 RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQIILFDGSNHVFHATLQAVEKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKVITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIG EGG EE F T + LG R+LR++TA++AA+ + Sbjct: 182 LPNM----PVAGVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|297517146|ref|ZP_06935532.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli OP50] Length = 236 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 14/241 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV E Q + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQC +P I P LE D ++ S N+ Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 Q 238 Q Sbjct: 236 Q 236 >gi|205354017|ref|YP_002227818.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273798|emb|CAR38793.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629130|gb|EGE35473.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 259 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I PP LE D ++ S N+ Sbjct: 138 ERLNKRRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251 Query: 238 QAICGD 243 Q GD Sbjct: 252 QVRFGD 257 >gi|77361513|ref|YP_341088.1| hypothetical protein PSHAa2598 [Pseudoalteromonas haloplanktis TAC125] gi|76876424|emb|CAI87646.1| putative RNA methyltransferase with a deep trefoil knot, RrmA and YibK are structural paralogs [Pseudoalteromonas haloplanktis TAC125] Length = 244 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + ++ + + T D ++ VLRMK G+++ +FNG+ GE+LS+I V K Sbjct: 2 RVPHIYQASSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKN 61 Query: 66 RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + Q + + + +++D+ IQKSVE+G+ I P+ ++ Sbjct: 62 VVVMPQQLNTHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLMG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+AAEQ +P ++PP L+ L ++ S + Sbjct: 122 DRLDKKHQQWQKIAIAAAEQSGRNFVPVVHPPVDLKQWLAQQSAAIKLTLHPRAEHSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + V L+GPEGG+ EE FV + LGPR+LR++TAA+ ++ + Sbjct: 182 ITV-----PKDGVRFLVGPEGGFTDEEMAQTKQQNFV-DIRLGPRVLRTETAALTVLSAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLQFGD 241 >gi|229220771|ref|YP_001783785.2| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 2336] Length = 245 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + + S D +++ VLRM+ G+ I LF+G + + + I+ K Sbjct: 2 RIPRIYHPTSLENQQTCQLSDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA 61 Query: 66 RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 IEVNILSRQLDNRESPLFIHLGQVISRGERMEFTIQKSVELGVNIITPLWSERCGVKLDK 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ISA EQC +P I P L+ D ++ + + Sbjct: 122 DRMEKKIQQWQKIAISACEQCGRNIVPEIRPLMKLQDWCAEQDGTLKLNLHPRAKYTIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L ++ V +LIGPEGG ++E + F T + LG R+LR++T A++A+ + Sbjct: 182 LPEI----PPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|17988874|ref|NP_541507.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1 str. 16M] gi|256043637|ref|ZP_05446562.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1 str. Rev.1] gi|256262333|ref|ZP_05464865.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260564827|ref|ZP_05835312.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265990057|ref|ZP_06102614.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|17984700|gb|AAL53771.1| surface protein [Brucella melitensis bv. 1 str. 16M] gi|260152470|gb|EEW87563.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263000726|gb|EEZ13416.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092061|gb|EEZ16358.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] Length = 248 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|297544383|ref|YP_003676685.1| hypothetical protein Tmath_0939 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842158|gb|ADH60674.1| protein of unknown function DUF558 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 245 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 +++ FVD + G H++ +VLR+K+GD I++ +G E+ + I V K + Sbjct: 1 MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDGS-TEYQTSIYGVEKNRV 59 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + +S T+ S + K+++++ +IQK E+G+ P+ITRY+ Sbjct: 60 ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + ++R + A +Q +LP I P + E LK + + E + Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + +I VAI IGPEGG+ EE + +SLGPRILR++TAA++ ++V Sbjct: 180 EVLDGVKNIKKVAIFIGPEGGFSEEEVDLALRYS-AKLVSLGPRILRTETAAISVCSIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YELGD 243 >gi|85703484|ref|ZP_01034588.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217] gi|85672412|gb|EAQ27269.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217] Length = 243 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 4/238 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+++ PL S Q HYL V+R GD +L+FNG+ GEW +++ GK Sbjct: 7 RLYLEHPLGEGQTIPLSQPQAHYLFGVMRQGVGDAVLVFNGEAGEWRAEVIEAGKRGGIL 66 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ Q+ Q D+ +F+PIK R D++++K+ EMG I PV T +T + DR+ Sbjct: 67 QIAEQTAPQRDPPDLWLMFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNSERIRQDRL 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186 + + + AAEQC +P + L+ +L +W Q++F DE E L + Sbjct: 127 QAHAVEAAEQCGGTYVPEVSDLHRLDRMLADWPEARQVMFCDEALAG--CAEGLGRDLPR 184 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L +LP +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 185 GAPWAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQNSLGDW 242 >gi|149911573|ref|ZP_01900186.1| hypothetical protein PE36_05278 [Moritella sp. PE36] gi|149805352|gb|EDM65364.1| hypothetical protein PE36_05278 [Moritella sp. PE36] Length = 243 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIR 66 R+F L + + + S D ++ VLRM GD + LFNGK G++ + I KS+ Sbjct: 4 PRIFESGELIVGSSFELSPDGAGHVGRVLRMTTGDTLTLFNGKGGQYQATIEQTTKKSVT 63 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + E+Q + + + + +++D+ IQKSVE+G+ AI P+ + + Sbjct: 64 VHIDEFQDINSESPLKIHLGQAISRGDKMDFTIQKSVELGVTAITPLFSERCGVKLSGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + I+A EQ +P + PP L+ ++ S N+L Sbjct: 124 LEKKIQQWQKIVIAACEQSGRNFVPQVLPPKQLKDWAAEETTELKLNLHPRAKYSINTLP 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + V +LIGPEGG ++E F L LGPR+LR++TAA+ A+ +Q Sbjct: 184 E-----PKHGVRLLIGPEGGLSADEINMTEQFNFEETL-LGPRVLRTETAALTAITALQC 237 Query: 240 ICGD 243 GD Sbjct: 238 RFGD 241 >gi|327412916|emb|CAX67930.1| conserved hypothetical protein [Salmonella bongori] Length = 243 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQVLQLFDGSNQVFAAEIISASKKS 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V ++ + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEVQVMKGETDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE + ++ S N+ Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQEPGLKLNLHPRAHASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG +EE F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|327191156|gb|EGE58200.1| hypothetical protein RHECNPAF_3350022 [Rhizobium etli CNPAF512] Length = 245 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 144/226 (63%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ +Q++YLA+VLRM+ ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSSGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q+R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEQTRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 VLSAIRE-KHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225 >gi|254293386|ref|YP_003059409.1| 16S ribosomal RNA methyltransferase RsmE [Hirschia baltica ATCC 49814] gi|254041917|gb|ACT58712.1| protein of unknown function DUF558 [Hirschia baltica ATCC 49814] Length = 256 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S + RLFV L + + +Q +YL VLR+ + D + +FNG+DGEW + ++ V + Sbjct: 1 MSTIPRLFVKADLTLGAPIALTSEQANYLFRVLRLSKNDAVRVFNGRDGEWRASVTEVMR 60 Query: 64 SIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 S F +E Q D+Q +F+P+K D++++K+ E+G+ I+PVIT+ TQ + Sbjct: 61 SAGFLCLEELIVPQAVIGDLQLLFAPLKKTCTDFVVEKATELGVTMIQPVITKRTQTSTV 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------- 175 + R+ AAEQ + L +P + P L L WD N ++VF DE Sbjct: 121 RVSRLEKIVEEAAEQTERLDIPLVQEPIQLLEALGKWDKNRRLVFCDEAGDDPTENWGGD 180 Query: 176 --NSLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + + AI+ + + AILIGPEGG+ EE++ L +V P++LGPRILR++TAAV Sbjct: 181 VGRARPMMEAISELKDGLAAILIGPEGGFSPEERKYLRQQDYVIPVTLGPRILRAETAAV 240 Query: 232 AAMALVQAICGDW 244 +A+ L QA GDW Sbjct: 241 SALTLWQAARGDW 253 >gi|218710623|ref|YP_002418244.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio splendidus LGP32] gi|218323642|emb|CAV19930.1| Hypothetical protein VS_2677 [Vibrio splendidus LGP32] Length = 243 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R++ + Q S D ++ VLRMKEG ++LLF+G E+ + I+ V K Sbjct: 2 RTPRIYHPELINQLGQLALSEDAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKN 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ T+P I P LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAIAACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + I V +LIGPEGG +EE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PISKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|148980482|ref|ZP_01816079.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3] gi|145961207|gb|EDK26521.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3] Length = 243 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ + D ++ VLRMKEG +LLF+G E+ + I+ V K Sbjct: 2 RIPRIHHPERIHQLGSLALGEDAAGHVGRVLRMKEGQEVLLFDGSGTEFPATIAEVSKKN 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAIAACEQCGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + I V +LIGPEGG +EE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PISKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|114561729|ref|YP_749242.1| hypothetical protein Sfri_0543 [Shewanella frigidimarina NCIMB 400] gi|114333022|gb|ABI70404.1| protein of unknown function DUF558 [Shewanella frigidimarina NCIMB 400] Length = 246 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 13/247 (5%) Query: 6 HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + D ++ VLRM GD I LFNG ++L++I K Sbjct: 2 RVPRIFQPLDNLQQGQTLQLDEDGVAHIGRVLRMGMGDQISLFNGDGNDYLAEIIETSKK 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + +S + + + +R+++ +QKSVE+G+ I P+ + Sbjct: 62 SIAVTVLSCEANNSESPLDLHLGQVISRGDRMEFTVQKSVELGVTTITPLFSDRCGVKLS 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + ISA EQ +P + P TL + ++ N Sbjct: 122 GERLEKKLQQWQKIVISACEQSGRSIVPIVRPAMTLAQWCEESTEALKLNLHPRASHGIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ V +LIGPEGG EE + F T + LGPR+LR++TA++ A+ Sbjct: 182 GLQL---SGQHHKVRLLIGPEGGLSDEEIAMTETQHF-TDILLGPRVLRTETASLTAITA 237 Query: 237 VQAICGD 243 +Q GD Sbjct: 238 LQVKFGD 244 >gi|312114482|ref|YP_004012078.1| hypothetical protein Rvan_1732 [Rhodomicrobium vannielii ATCC 17100] gi|311219611|gb|ADP70979.1| protein of unknown function DUF558 [Rhodomicrobium vannielii ATCC 17100] Length = 242 Score = 267 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 101/240 (42%), Positives = 141/240 (58%), Gaps = 2/240 (0%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R+FV L + Q HYL +VLR+ EG +L F+G GEW +KI KS Sbjct: 2 AMQRIFVANKLDPDGEIALDTAQAHYLLNVLRLSEGAEVLTFDGTSGEWRAKIVKARKSA 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + R QT + + Y F+P+K RLDYM+QK+VEMG ++PVIT++T Sbjct: 62 CTIRLMEKVREQTAPTGIHYAFAPLKQARLDYMVQKAVEMGASLLQPVITQHTAVPRLGA 121 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DR++ I AAEQC +LTLP I P L+ +D + +VF DE + L+ L A+ Sbjct: 122 DRMKANAIEAAEQCGVLTLPEIKAPVKFAAFLQAFDKDRALVFCDERAEVASPLDALSAL 181 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + V LIGPEGG+ E+ L S FV P+SLGPRI+R+DTAAVA +AL+ GDW Sbjct: 182 S-GRKVTALIGPEGGFSENERADLLSRSFVCPISLGPRIMRADTAAVAVLALLNVTVGDW 240 >gi|110632733|ref|YP_672941.1| hypothetical protein Meso_0372 [Mesorhizobium sp. BNC1] gi|110283717|gb|ABG61776.1| protein of unknown function DUF558 [Chelativorans sp. BNC1] Length = 248 Score = 267 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 142/226 (62%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL++ L + + + +Q HYL +VLRM+ G +L+FNG+ GEWL+++ Sbjct: 1 MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKE 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K V +R QT Q D+ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 ISKKSALLAVRELTREQTPQPDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQI 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR++ I AAEQC IL++P + P L+ LL W+ ++VF DE +N Sbjct: 121 PKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRWEEGRRLVFCDEDAPGQNPFP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +L A+A + +L+GPEGG+ E+ TL SL FV P+ LGPRILR Sbjct: 181 RLSALA-GERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILR 225 >gi|240850045|ref|YP_002971438.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup] gi|240267168|gb|ACS50756.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup] Length = 247 Score = 267 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 108/226 (47%), Positives = 139/226 (61%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ L + + K G Q YL HVLRMKEG ILLFNG+DGEWL+K+ Sbjct: 1 MRINYKLKRLFIRQTLALNEEIKIEGAQASYLVHVLRMKEGAEILLFNGQDGEWLAKLII 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 V K + ++ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP +L LL WD + F DE S N L Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLARWDETQPLFFCDEEHKSHNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + ILIGPEGG+ EE+ L PFV P+SLGPRILR Sbjct: 181 SFKK-RDVTTPGILIGPEGGFSEEERSFLKKHPFVVPISLGPRILR 225 >gi|325577675|ref|ZP_08147950.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC 33392] gi|325160420|gb|EGC72546.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC 33392] Length = 263 Score = 267 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L ++ + S D +++ VLRM E + I LF+G + + +KI V K Sbjct: 21 RIPRIYHPESLKNQSTCQLSEDAANHVGRVLRMTESEQIELFDGSNHIYPAKIIEVSKKA 80 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 K+S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 81 VKVEILGCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPLWSERCGVKLDG 140 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 141 ERMDKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGTLKLNLHPRAQYSIKT 200 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +E F T + LG R+LR++TA++AA++ + Sbjct: 201 LPSI----PKEGVRLLIGSEGGLSPQEIVQTEQQGF-TEILLGKRVLRTETASLAAISAL 255 Query: 238 QAICGD 243 Q GD Sbjct: 256 QICFGD 261 >gi|311695817|gb|ADP98690.1| ribosomal RNA small subunit methyltransferase E [marine bacterium HP15] Length = 244 Score = 267 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 16/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ + L + + + ++ VLRM+ G +LLFNG ++ + IS K Sbjct: 2 RIPRIYTNSALAQGSTAELDDNAAQHVGRVLRMQAGQELLLFNGDGNDYPATISSASKKN 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V + T+ ++ + K +R+DY +QK+VEMG+ I P+ T Sbjct: 62 VEVQVGTPEANTTESPLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERCDVKLKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176 + ++ ISAAEQC +P I P T+ L+ + D ++V T Sbjct: 122 DREDKRLRHWQSVAISAAEQCGRARVPEILPVMTVSEWLEHSRDCEVRLVLHHRTEH--- 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L +I VA++IGPEGG EE F+ P++LGPR+LR++TA VAAMAL Sbjct: 179 ---ALKSIIPPERVALMIGPEGGLSPEEIAHAEKEGFL-PVALGPRVLRTETAPVAAMAL 234 Query: 237 VQAICGD 243 Q + GD Sbjct: 235 CQWLWGD 241 >gi|157960429|ref|YP_001500463.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella pealeana ATCC 700345] gi|157845429|gb|ABV85928.1| protein of unknown function DUF558 [Shewanella pealeana ATCC 700345] Length = 243 Score = 267 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L + + ++ VLRM G+ + LFNG ++L++I K Sbjct: 2 RVPRIYQQSTLVVGQSVALDDEAAGHVGRVLRMSSGEQVSLFNGDGNDYLAEIISASKKN 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + KV + ++ ++ + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 VEVKVLSCEANDSESPLNLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLTG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ +P I P L ++ N Sbjct: 122 ERLDKKIQQWQKIVISACEQSGRSVVPVIRPAMQLSDWCAEDSDAVKLNLHPRASHGVNG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L V ++IGPEGG + E F T + LGPR+LR++TAA+ ++ + Sbjct: 182 LTL-----PNNRVRLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|167040699|ref|YP_001663684.1| 16S ribosomal RNA methyltransferase RsmE [Thermoanaerobacter sp. X514] gi|300914740|ref|ZP_07132056.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561] gi|307724026|ref|YP_003903777.1| hypothetical protein Thet_0859 [Thermoanaerobacter sp. X513] gi|166854939|gb|ABY93348.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X514] gi|300889675|gb|EFK84821.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561] gi|307581087|gb|ADN54486.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X513] Length = 245 Score = 267 bits (685), Expect = 7e-70, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 +++ FVD + G H++ +VLR+K+GD I++ +G E+ + I V K + Sbjct: 1 MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDGS-TEYQTSIYGVEKNRV 59 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + +S T+ S + K+++++ +IQK E+G+ P+ITRY+ Sbjct: 60 ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + ++R + A +Q +LP I P + E LK + + E + Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + +I VAI +GPEGG+ EE + +SLGPRILR++TAA++ ++V Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDLALRYS-AKLVSLGPRILRTETAAISVCSIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YELGD 243 >gi|307132693|ref|YP_003884709.1| hypothetical protein Dda3937_00423 [Dickeya dadantii 3937] gi|313104178|sp|P37995|RSME_DICD3 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|306530222|gb|ADN00153.1| predicted protein [Dickeya dadantii 3937] Length = 244 Score = 267 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + S D +++ VLRM G + LF+G + + ++I GK Sbjct: 2 RIPRIFHPDTLTPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R + Q+ ++ + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 NVRVRYAAGQTENRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC +P I P TLE D+ ++ S N Sbjct: 122 GERLEKKIAQWQKIAIAACEQCGRNRVPEIRPVQTLESWCAEPDNGLKLNLHPRAAHSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ Sbjct: 182 TLPL-----PVSRIRLLIGPEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|322514739|ref|ZP_08067765.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976] gi|322119334|gb|EFX91450.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976] Length = 248 Score = 267 bits (684), Expect = 9e-70, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +T+ S D +++ VLRM EGD I+LF+G + + + + VGK Sbjct: 7 RIPRIYHPELLANQTRCILSEDATNHVGRVLRMTEGDQIILFDGSNHIFHATLQAVGKKQ 66 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 67 IIAKIDSSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLCSERCGVKLND 126 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 127 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPFMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 186 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +EE + F T + LG R+LR++TA++ A+ + Sbjct: 187 LPNV----PEAGVRLLIGSEGGLSAEEIAMTETEGF-TEVLLGKRVLRTETASLTAITAL 241 Query: 238 QAICGD 243 Q GD Sbjct: 242 QVCFGD 247 >gi|332535117|ref|ZP_08410927.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas haloplanktis ANT/505] gi|332035435|gb|EGI71933.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas haloplanktis ANT/505] Length = 244 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + ++ + + T D ++ VLRMK G+++ +FNG+ GE+LS+I V K Sbjct: 2 RVPHIYQTSSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKT 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E + + +++D+ IQKSVE+G+ I P+ ++ Sbjct: 62 VVVMPLELNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLMG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+AAEQ +P I+PP L+ L ++ S + Sbjct: 122 DRLEKKHQQWQKIAIAAAEQSGRNFVPIIHPPIDLKQWLAQQTDAIKLTLHPRAEHSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + V L+GPEGG+ +E L FV + LGPR+LR++TAA+ ++ + Sbjct: 182 ITV-----PKDGVRFLVGPEGGFTDDEMALTKQLEFV-DIRLGPRVLRTETAALTVLSAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLQFGD 241 >gi|190890510|ref|YP_001977052.1| hypothetical protein RHECIAT_CH0000889 [Rhizobium etli CIAT 652] gi|190695789|gb|ACE89874.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 245 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 144/226 (63%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +AS +Q++YLA+VLRM+ ILLFNG+DGEW + +S+ Sbjct: 1 MRANFRMQRLFVDAPLSAGAVVEASAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEETRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225 >gi|161017487|emb|CAK01045.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 277 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ L + + K G Q YL HVLRMKEG IL+FNG+DGEWL+K+ Sbjct: 31 MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 90 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 V K + ++ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG ++PVIT +TQ Sbjct: 91 VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 150 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP +L LL+ WD + F DE S N L Sbjct: 151 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 210 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ +LIGPEGG+ EE+ L PFV P+SLGPRILR Sbjct: 211 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILR 255 >gi|229597125|ref|YP_001622546.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis ATCC 23445] Length = 248 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 ILTGLELGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|295097485|emb|CBK86575.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 248 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + + S D +++ VLRM G I LF+G + + ++I+ K Sbjct: 7 RIPRIYHPELITPGGEIALSDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKS 66 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 67 VHVKVLRGEVDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 126 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQ +P I P LE + ++ S N+ Sbjct: 127 ERLNKKIQQWQKIAIAACEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINT 186 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 187 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 240 Query: 238 QAICGD 243 Q GD Sbjct: 241 QVRFGD 246 >gi|119470540|ref|ZP_01613243.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7] gi|119446241|gb|EAW27518.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7] Length = 244 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + ++ + + T D ++ VLRMK G+++ +FNG+ GE+LS+I V K Sbjct: 2 RVPHIYQASSITLNTPVSLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVSKKN 61 Query: 66 RFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + Q + + +++D+ IQKSVE+G+ I P+ ++ Sbjct: 62 VVVMPQQFNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLIG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+AAEQ +P ++PP ++ L+ + ++ S + Sbjct: 122 DRLDKKHQQWQKIAIAAAEQSGRNYVPVVHPPIDIKQWLEQSTNAIKLTLHPRAEHSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + V L+GPEGG+ EE FV + LGPR+LR++TAA+ ++ + Sbjct: 182 ITV-----PEDGVRFLVGPEGGFTDEEMAQTKQQEFV-DIRLGPRVLRTETAALTVLSAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLQFGD 241 >gi|254787838|ref|YP_003075267.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901] gi|237684009|gb|ACR11273.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901] Length = 241 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + H+L VLRM+ G ++LFNG GE+ + I+ K Sbjct: 2 RIPRIYTQQLLQPEVDVVLEEAASHHLLKVLRMETGRELILFNGLGGEYRATITSATKKA 61 Query: 66 RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + +R D+++QK+ E+G+ I P+ + + Sbjct: 62 ATVTISEHDPVERESPLVTELAVGISRGDRFDWVLQKATELGISRIVPLFSERSEVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I A EQC TLP + P ++E + + + + V + Sbjct: 122 ERLEKRLSQWQKVVIGACEQCQRNTLPELTAPQSVENYVTDSLCDLRFVLHHRSTHH--- 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L +A +VA+L+GPEGG E + + F +PL+LGPR+LR++TA + A+++V Sbjct: 179 ---LSQLAAPASVALLVGPEGGLSDAEIQLAENAGF-SPLALGPRVLRTETAPLVALSVV 234 Query: 238 QAICGDW 244 QA GD+ Sbjct: 235 QATWGDF 241 >gi|167855789|ref|ZP_02478542.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755] gi|167853068|gb|EDS24329.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755] Length = 244 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L K+ S D ++++ VLRM EG ++LF+G + + + I V K Sbjct: 2 RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I K++ Q + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 ISVKIQNSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPLWSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P L K D ++ S S Sbjct: 122 ERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKLTDWCKEQDGMLKLNLHPRAKYSLKS 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG EE + F T + LG RILR++TA++A + ++ Sbjct: 182 LLNV----PQEGVRLLIGSEGGLSPEEIAMTEAENF-TEVLLGKRILRTETASLATITVL 236 Query: 238 QAICGD 243 Q + GD Sbjct: 237 QMLYGD 242 >gi|197104001|ref|YP_002129378.1| hypothetical protein PHZ_c0535 [Phenylobacterium zucineum HLK1] gi|196477421|gb|ACG76949.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 239 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 3/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + RLFV L + Q YLA V+R K GD + +FNG+DGEW + ++ VGK + Sbjct: 1 MIRLFVTHDLSAGAELALDEGQSRYLAAVMRAKAGDELRVFNGRDGEWRALVAAVGKRAV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +V +R Q D+ + + +K L+ +++K+ E+G IRPV+T T H ++ Sbjct: 61 TLQVIDPARPQAPGPDLDLVVALVKRAPLETIVEKAAELGARRIRPVVTERTNADHTRVE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R A+EQ L +P + P LE LL W+ +++F DE + LE L A Sbjct: 121 RLRAIATEASEQTGRLDVPEVTEPVKLERLLAEWEPGRRLLFCDEAGDARPVLEALEGAA 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+E L +LP+ P SLGPRILR+DTAA++A+AL QA GDW Sbjct: 181 GP--WAILIGPEGGFSPREREALRALPYAVPASLGPRILRADTAAISALALWQAAAGDW 237 >gi|209548049|ref|YP_002279966.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533805|gb|ACI53740.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 147/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ DQ++YLA+VLRM+EG +LLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSSGAALEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I+ ++R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRIQLTAIEETRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225 >gi|219871131|ref|YP_002475506.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus parasuis SH0165] gi|219691335|gb|ACL32558.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 244 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L K+ S D ++++ VLRM EG ++LF+G + + + I V K Sbjct: 2 RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I K++ Q + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 ISVKIQNSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPLWSERCGVKLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P L + D ++ S S Sbjct: 122 ERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKLTDWCQEQDGMLKLNLHPRAKYSLKS 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG SEE + F T + LG RILR++TA++A + + Sbjct: 182 LPNI----PKEGVRLLIGSEGGLSSEEIAMTEAENF-TEVLLGKRILRTETASLATITAL 236 Query: 238 QAICGD 243 Q + GD Sbjct: 237 QMLYGD 242 >gi|159045639|ref|YP_001534433.1| 16S ribosomal RNA methyltransferase RsmE [Dinoroseobacter shibae DFL 12] gi|157913399|gb|ABV94832.1| protein of unknown function DUF558 [Dinoroseobacter shibae DFL 12] Length = 249 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 2/238 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ PL SG Q HYL V+R G+ + LFNG G W +++ GK Sbjct: 11 RLYVEHPLGQGQTVPLSGAQAHYLFGVMRRGVGEVVTLFNGHAGAWAARVVEAGKRGGVL 70 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +VE Q+ Q D+ F+PIK R D++++K+ EMG I PV T +T DR+ Sbjct: 71 EVETQTAPQRDPPDLWLCFAPIKKARTDFIVEKAAEMGARRIVPVQTAFTNAERIRRDRL 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-H 186 + + + AAEQC +P + L+ LL +W + ++F DE E + A Sbjct: 131 QAHAVEAAEQCGGTFVPEVADLVGLDRLLSDWPSDRSLMFCDEALAEEGAAAAADTPALP 190 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ L ++P + LGPRILR+DTAAVAA+ L Q GDW Sbjct: 191 DGPWAILIGPEGGFSEPERARLRAMPQAQSVRLGPRILRADTAAVAALTLWQIRYGDW 248 >gi|315127638|ref|YP_004069641.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913] gi|315016152|gb|ADT69490.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913] Length = 244 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + ++ P+ + T D ++ VLRMK G+ + +FNG+ GE+LS+I V K Sbjct: 2 RVPHIYQSSPIALNTPLNLDDDAAGHVGRVLRMKVGEQVSMFNGEGGEFLSEIIEVSKKT 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E+ + + +++D+ IQKSVE+G+ I P+ ++ Sbjct: 62 VVVMPLEFNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+AAEQ +P I PP L+ L+ ++ S + Sbjct: 122 DRLEKKHQQWQKIAIAAAEQSGRNFVPIINPPVDLKHWLEQQTDAIKLTLHPRAEHSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + V L+GPEGG+ +E FV + LGPR+LR++TAA+ ++ + Sbjct: 182 ITV-----PDGGVRFLVGPEGGFTDDEMAQTKQQEFV-DIRLGPRVLRTETAALTVLSAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLQFGD 241 >gi|260913267|ref|ZP_05919749.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325] gi|260632854|gb|EEX51023.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325] Length = 244 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L T + S D +++ VLRM+ G+ + LF+G + + + I+ V K Sbjct: 2 RIPRIYHPTSLQGITFCELSEDAANHVGRVLRMQVGEQLELFDGSNHTYAATITQVSKKA 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVEILSQQLDDRESHLKIHLGQVISRGERMEFTIQKSVELGVSVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P I P L+ D ++ + S + Sbjct: 122 DRMEKKIQQWQKIAIAACEQCGRNVIPEIRPLMRLQDWCAEKDGALKLNLHPKAQYSIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPAI----PEEGVRLLIGSEGGLSPQEISQTEQQGF-TEVLLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|288550384|ref|ZP_05970221.2| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC 35316] gi|288314998|gb|EFC53936.1| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC 35316] Length = 248 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + + S D +++ VLRM G I LF+G + + ++I+ K Sbjct: 7 RIPRIYHPELITAGREIALSDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKS 66 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 67 VHVNVLRGEVDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 126 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + ++A EQ +P I P LE + ++ S N+ Sbjct: 127 ERLNKKIQQWQKIAVAACEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINT 186 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 187 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 240 Query: 238 QAICGD 243 Q GD Sbjct: 241 QVRFGD 246 >gi|160931277|ref|ZP_02078678.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753] gi|156869755|gb|EDO63127.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753] Length = 242 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 14/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64 + R FV+ Q +G ++ LRMK GD + L + + ++ + + ++ Sbjct: 1 MPRFFVES--VSGGQVILTGPDAAHMCRSLRMKPGDTVTLCDTQGFDYQCVVQRLSPEEA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ V K ++D+++QK+VE+G+ I PV + Sbjct: 59 ALTIIDKHQCENEPSLSVILYQGLPKGEKMDWIVQKAVELGVSQIVPVRMERCVSRPDGK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + DR + + AA+QC LP + PP L +F E G S+ Sbjct: 119 ASQKKTDRWQKIAVEAAKQCGRGILPQVCPPADFHQALIQAAQAEVFLFCYE--GGGESV 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +L V++LIGPEGG+ E E V P++LG RILR++TA +AA++++ Sbjct: 177 SRLIT-QKTKTVSVLIGPEGGFSLPEAEAARKAGGV-PVTLGKRILRTETAPLAALSVIM 234 Query: 239 AICG 242 G Sbjct: 235 YASG 238 >gi|188580094|ref|YP_001923539.1| hypothetical protein Mpop_0826 [Methylobacterium populi BJ001] gi|179343592|gb|ACB79004.1| protein of unknown function DUF558 [Methylobacterium populi BJ001] Length = 250 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 112/240 (46%), Positives = 145/240 (60%), Gaps = 4/240 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW S+I G KS Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRSEIVPQGRKSAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V Q+R Q SD+ Y+F+P+KT RLDYM QK+VEMG G ++PV TR+TQ +DR Sbjct: 69 LRVVAQTRPQPAPSDLHYLFAPLKTGRLDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-- 184 ++ I AAEQC IL +P I P L L D +VF DE + + L Sbjct: 129 LQANAIEAAEQCGILAVPEIGEPDRLPACLAALDPGRLLVFCDEDAPVTDPVAALRGAAD 188 Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A P +A+L+GPEGG+H EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 189 PADPPPLAVLVGPEGGFHPEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|300718242|ref|YP_003743045.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064078|emb|CAX61198.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 243 Score = 265 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F L ++ + +++ VLRM G + LF+G + + ++I K Sbjct: 2 RIPRIFHPELLTAGSEIALCDEAANHVGRVLRMGAGQALELFDGSNLTFAAEIVQADKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +SR +++S + + + ++++ IQK+VE+G+ I P+ + Sbjct: 62 VRVSLGESREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC ++P + LE D ++ S N+ Sbjct: 122 ERLAKKHQQWQKIVIAACEQCGRNSVPEVREAMMLERWSAEQDDGLKLNLHPRASQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLTADEISMTAQYGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|332142455|ref|YP_004428193.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep ecotype'] gi|327552477|gb|AEA99195.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep ecotype'] Length = 242 Score = 265 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ ++ + + + D H++A VLR+K I+LFNG E+ +++ V + Sbjct: 2 RIPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQVISVQRKK 61 Query: 66 RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S + + K +R+D ++QKSVE+G+ I PVIT Sbjct: 62 VIVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERCTVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I A EQ +P + P +L L + + ++V A G+E Sbjct: 122 SRWEKKIQQWQKIVIGACEQSGRNIIPKLNAPVSLNTWLSSSTNTTRLVLAP---GAEQP 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +LIGPEGG E + + +SLGPRILR++TAA+ +++++ Sbjct: 179 LA--RQPYNAQGFRLLIGPEGGLSDTEIHQANENGY-QSVSLGPRILRTETAAITSLSIL 235 Query: 238 QAICGDW 244 QA GD+ Sbjct: 236 QAQHGDF 242 >gi|256752132|ref|ZP_05492998.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus CCSD1] gi|256748946|gb|EEU61984.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus CCSD1] Length = 245 Score = 265 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++++F+D G+ +H+L +VLR+K G+ I+ +G E+ ++I + K + Sbjct: 1 MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + S T+ ++ K+++++ +IQK E+G+ PV+TRYT Sbjct: 60 ILFLERELESNTESPLEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + + R R + A +Q +P I P + E + D + E + Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + + I IGPEGG+ EE E + + P+SLGPRILR++TAA+A ++V Sbjct: 180 EVLKKAKGVKKIGIFIGPEGGFSQEEIELALNKS-IKPVSLGPRILRTETAAIAVCSIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YELGD 243 >gi|226942481|ref|YP_002797554.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii DJ] gi|226717408|gb|ACO76579.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 239 Score = 265 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 19/248 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F+D PL + Q HY+ VLR+ GD + LF+G E+ ++ VGK Sbjct: 2 RLSRFFIDAPLALGL-LDLPEAQAHYIGRVLRLAPGDAVQLFDGSGREFRGELVEVGKK- 59 Query: 66 RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +VE + + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 60 SVRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVRLK 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + ISA EQC LP I+PP LE LK + ++V Sbjct: 120 DERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVLHPFA----- 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + A ++A LIGPEGG E + LGPR+LR++TA V A+++ Sbjct: 175 --EPLASHARPASLAFLIGPEGGLSETEVDA-ARRAGYRAARLGPRVLRTETAPVVALSV 231 Query: 237 VQAICGDW 244 Q + GD+ Sbjct: 232 AQQLWGDF 239 >gi|150395613|ref|YP_001326080.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium medicae WSM419] gi|150027128|gb|ABR59245.1| protein of unknown function DUF558 [Sinorhizobium medicae WSM419] Length = 245 Score = 265 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 100/226 (44%), Positives = 149/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV+ PL +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++IS Sbjct: 1 MRANFRMQRLFVESPLHNGASHQATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEISM 60 Query: 61 VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + V Q+R Q D+ Y+F+P+KT RLDY++QK+VEMG G ++PVIT++ Q Sbjct: 61 PSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVITQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++R+R I AAEQC +L +P + P LE LL W + +IVF DE S+N L Sbjct: 121 KIGSLERIRANAIEAAEQCGVLGIPAVEEPRRLEDLLAAWPRDRRIVFCDEGNESQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L+ +A +A+LIGPEGG+ E++ L SL FVT + LGPRILR Sbjct: 181 ILNELAEH-RLALLIGPEGGFSETERDLLRSLDFVTAIPLGPRILR 225 >gi|85714212|ref|ZP_01045200.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A] gi|85698659|gb|EAQ36528.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A] Length = 256 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 148/243 (60%), Gaps = 1/243 (0%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 I RL+VD PL + + +Q +YL +VLR+ G N+L+FNG+DGEW + I Sbjct: 11 IDFRSPRLYVDAPLAAGCRIPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAIFGRK 70 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + ++ +R Q + DV+Y F+P+K RLDYM+QK+VEMG+ A++P++TR+TQ Sbjct: 71 RLENLEIVAATRKQDQLPDVRYAFAPLKHARLDYMVQKAVEMGVCALQPLLTRFTQVGRV 130 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N +R+R I AAEQC IL+L + P +L+ L +VF DE + N L L Sbjct: 131 NGERMRANVIEAAEQCGILSLAAVEEPASLDQWLGRRGPERLLVFCDEAASTANPLRTLE 190 Query: 183 AIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +L+GPEGG+ +E+ L P V LSLGPRILR+DTAAVA +ALVQ + Sbjct: 191 PARRVAQGIDVLVGPEGGFAEDERVNLLKQPNVLRLSLGPRILRADTAAVAVLALVQTVL 250 Query: 242 GDW 244 GDW Sbjct: 251 GDW 253 >gi|52424293|ref|YP_087430.1| hypothetical protein MS0238 [Mannheimia succiniciproducens MBEL55E] gi|52306345|gb|AAU36845.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 243 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + + + +++ VLRM+ G+ + LF+G + + + I K Sbjct: 2 RIPRIYHPDSLTNIKTCRLTDEAANHVGRVLRMQAGERLELFDGSNHVYTAVILQADKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S ++ + + R+++ +QKSVE+G+ I P+ + Sbjct: 62 VTAEIRDCQLDDRESHLKIHLGQVISRGERMEFTVQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ++A EQC +P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAVAACEQCGRNIVPEIRPMMKLQDWCAEQDGMLKLNLHPRAKYSIQT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG +E F T + LG R+LR++TA++ A+ + Sbjct: 182 LPDIPA----EGVRLLIGSEGGLSPQEIAQTERQGF-TEVLLGKRVLRTETASLVAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QLCFGD 242 >gi|296104610|ref|YP_003614756.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059069|gb|ADF63807.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + + S D +++ VLRM G I LF+G + + ++I+ K Sbjct: 2 RIPRIYHPELITAGREIALSDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VHVNVLRGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + + I+A EQ +P I P LE + ++ S N+ Sbjct: 122 ERLNKKIQQWQKIAIAACEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|307245046|ref|ZP_07527140.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854034|gb|EFM86245.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 243 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +T S D +++ VLRM EG+ I+LF+G + + + + VGK Sbjct: 2 RIPRIYHPELLANRTDCILSEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAKIDGSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +EE E + F T + LG R+LR++TA++AA+ + Sbjct: 182 LPNV----PEAGVRLLIGSEGGLSAEEIEMTETQGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|319782233|ref|YP_004141709.1| hypothetical protein Mesci_2516 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168121|gb|ADV11659.1| protein of unknown function DUF558 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 244 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV L + +A Q HYL HVLR+ EG IL+FNG+DGEW + IS Sbjct: 1 MRANYKMQRLFVTDDLAPDIEFEAGQQQSHYLLHVLRLGEGAEILVFNGRDGEWSAAISA 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +++R KV R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ Sbjct: 61 KTKRAVRLKVSALQRPQPPLPDLVYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++DR+R + AAEQC IL +P + + LL WD +++F DE + N L Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPQVREAEKFDRLLTGWDTERRLIFCDEDASTNNPLA 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L A+ + +L+GPEGG+ +E++ L +LPFVT + LGPRILR Sbjct: 181 ALQAVKE-KKLGLLVGPEGGFSDDERKMLRALPFVTAIPLGPRILR 225 >gi|241203235|ref|YP_002974331.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857125|gb|ACS54792.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 245 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 99/226 (43%), Positives = 147/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ DQ++YLA+VLRM++G ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLTRGAGVEANADQFNYLANVLRMEDGGEILLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q + D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R I AAEQC IL +P + P L LL W +I++ DE +N L Sbjct: 121 KVTNLDKLRANVIEAAEQCGILGIPDVAEPVRLLDLLDRWPSERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225 >gi|83859513|ref|ZP_00953034.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii HTCC2633] gi|83852960|gb|EAP90813.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii HTCC2633] Length = 254 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 99/250 (39%), Positives = 148/250 (59%), Gaps = 13/250 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RL++D PL DQ HYL +V+R K GD + LFNG+DGEW ++++ K Sbjct: 5 PRLYIDAPLEAGAVLDLDRDQAHYLVNVMRRKPGDGVRLFNGRDGEWRAEVASADRKRAS 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ Q RSQ+ D+ F+P+K R D++++K+ E+G+ +I PVIT+ TQ+ DR Sbjct: 65 LQIVQQRRSQSATPDMALYFAPVKKARTDFIVEKATELGVASITPVITQRTQSERVRTDR 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----------- 175 ++ T A+EQ + L LP I+ P +L +LK WD ++FADE+ S+ Sbjct: 125 MQALTREASEQTERLDLPVIHEPVSLTQMLKGWDEARTLMFADESGDSQTEPWGGEHGRA 184 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L A+L+GPEGG+ EE+ LH+ FV P+SLGPRILR+DTAA AA+ Sbjct: 185 RPMAEALAGRERGGKWAMLVGPEGGFSVEERTLLHAQTFVLPVSLGPRILRADTAAAAAL 244 Query: 235 ALVQAICGDW 244 ++ Q++ GDW Sbjct: 245 SVWQSMLGDW 254 >gi|254437857|ref|ZP_05051351.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 307] gi|198253303|gb|EDY77617.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 307] Length = 234 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 6/236 (2%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV 69 +VD PL + + S +Q HYL V+R+ G ++ LFNG+DGEW + ++ K Sbjct: 2 YVDHPLGPQERVALSREQAHYLFGVMRLDVGADVSLFNGRDGEWRALVAAASKKSGVLDC 61 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVR 128 Q++ D+ +F+PIK +R ++++K+ E+G I P+ T YTQ+ DR++ Sbjct: 62 VVQTKPLQMPPDLWLVFAPIKKDRTSFIVEKAAELGAARIVPLQTEYTQSANRVRQDRLQ 121 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + + AAEQC +P + +L W+ +I+F DE + + +A Sbjct: 122 AHALEAAEQCGGTYVPEVAELQKFAKMLDTWNPTRRILFCDEAMVDKPLILPTNA----G 177 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ +E++ L+S+ +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 178 PWAILIGPEGGFSDKERDRLNSMLCAHAISLGPRILRADTAAVAAMTLWQQAMGDW 233 >gi|83644376|ref|YP_432811.1| 16S ribosomal RNA methyltransferase RsmE [Hahella chejuensis KCTC 2396] gi|83632419|gb|ABC28386.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 247 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 19/251 (7%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + R+F+D PL +Q +GDQ +Y+ VLRM+ GD LF+G ++ K+ Sbjct: 1 MRNN----RIFIDQPLDGLSQLTLTGDQANYVGRVLRMRPGDAFHLFSGDGRDFPVKVLA 56 Query: 61 VGKSIRFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 VG+ + V + R+DY +QKS EMG+ A+ P+++ Sbjct: 57 VGRRDVEVALSEPLAIEAESPLRVHLGQVLSRGERMDYAVQKSTEMGVTALTPLLSERCE 116 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + R +ISA EQC +P I T LE L++ + +++ Sbjct: 117 VRLDGERQDKRWRHWRQVSISACEQCGRARVPDIGDVTPLESWLQSATADLKLILHP--- 173 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +V +LIGPEGG+ EE FV LGPRILR++TA VA Sbjct: 174 ---GDARAWSPAQPPASVCLLIGPEGGFTDEEVALAERHGFVHA-PLGPRILRTETAPVA 229 Query: 233 AMALVQAICGD 243 A+AL+Q + GD Sbjct: 230 ALALMQWLWGD 240 >gi|157377104|ref|YP_001475704.1| hypothetical protein Ssed_3972 [Shewanella sediminis HAW-EB3] gi|157319478|gb|ABV38576.1| protein of unknown function DUF558 [Shewanella sediminis HAW-EB3] Length = 243 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + + ++ VLRM G+ + LFNG E+L++I K Sbjct: 2 RIPRIYQASTFTVGMSVALDDEAASHVGRVLRMSSGEQVSLFNGDGNEYLAQIESASKKN 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S + +S + + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 VQVTILSSVANESESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I A EQ +P + P +LE + ++ Sbjct: 122 ERLEKKIHQWQKIVIGACEQSGRSLVPQVRPAMSLEAWSAEQTDSLKLNLHPRAAHGIGG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L P V +LIGPEGG E F T + LGPR+LR++TAA+ A++ + Sbjct: 182 LTL-----PEPRVRLLIGPEGGLSETEILMTEQHAF-TDVLLGPRVLRTETAALTAISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|127514152|ref|YP_001095349.1| hypothetical protein Shew_3224 [Shewanella loihica PV-4] gi|126639447|gb|ABO25090.1| protein of unknown function DUF558 [Shewanella loihica PV-4] Length = 243 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ + Q + ++ VLRM G+ + LFNG +L++I K Sbjct: 2 RIPRIYQLGNYDLNQQLMLDEEAAGHVGRVLRMGAGEQLELFNGDGHNYLTEIVTASKKN 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V + + + ++ + +R+D+ +QKSVE+G+ I P+ + Sbjct: 62 VEVRVLSKEANDNESPLNLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLTG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQ T+P + P L+ ++ N Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSTVPEVRPAMQLDDWCGEATQALKLNLHPRADHGING 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P V +LIGPEGG +E + F T + LGPR+LR++TAA+ A++ + Sbjct: 182 L-----VMETPRVRLLIGPEGGLSPQEIAMTETHAF-TDVLLGPRVLRTETAALTAISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|271502142|ref|YP_003335168.1| hypothetical protein Dd586_3632 [Dickeya dadantii Ech586] gi|270345697|gb|ACZ78462.1| protein of unknown function DUF558 [Dickeya dadantii Ech586] Length = 244 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + S D +++ VLRM G + LF+G + + ++I GK Sbjct: 2 RIPRIFHPDTLAPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFEAEIVQAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R + Q+ + + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVRYATGQTEDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC +P I P TLE D+ ++ N Sbjct: 122 GERLEKKIAQWQKIAIAACEQCGRNRVPDIRPVQTLESWCAESDNGLKLNLHPRASQHIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ Sbjct: 182 TLPL-----PVSRIRLLIGPEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|260462657|ref|ZP_05810863.1| protein of unknown function DUF558 [Mesorhizobium opportunistum WSM2075] gi|259031563|gb|EEW32833.1| protein of unknown function DUF558 [Mesorhizobium opportunistum WSM2075] Length = 273 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 140/226 (61%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV L + A Q HYL HVLR+ EG IL+FNG+DGEW + I+ Sbjct: 30 MRANYKMQRLFVPDDLAGDAEFDAGQQQSHYLMHVLRLGEGAEILVFNGRDGEWSAAIAA 89 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +++R KV R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ Sbjct: 90 KTKRAVRLKVLALQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 149 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++DR+R + AAEQC IL +P + E +L WD +++F DE + N L Sbjct: 150 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERVLTGWDKGRRLIFCDEDASTNNPLP 209 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI + +L+GPEGG+ EE++ L +LPFV+ + LGPRILR Sbjct: 210 ALQAIRE-KKLGLLVGPEGGFSDEERKMLRALPFVSAIPLGPRILR 254 >gi|260427823|ref|ZP_05781802.1| surface protein [Citreicella sp. SE45] gi|260422315|gb|EEX15566.1| surface protein [Citreicella sp. SE45] Length = 269 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 140/245 (57%), Gaps = 4/245 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 +++ + RLFVD PL + +Q HYL V+R+ G ILLFNG+DGEWL +++ Sbjct: 27 VRLMTAKVRLFVDHPLGAGQPVPLTREQAHYLFSVMRLGAGAPILLFNGRDGEWLCEVTE 86 Query: 61 VGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK + Q+R Q D+ +F+PIK R D++++K+VE+G+ + PV T++T + Sbjct: 87 AGKRGGEAVCDTQTRPQQMPPDLWLLFAPIKKARTDFIVEKAVELGVRRLLPVQTQFTNS 146 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR++ + + AAEQC L +P + L+ LL +W ++F DE + Sbjct: 147 ERIRQDRLQAHAVEAAEQCGALFVPEVAELARLDRLLADWPAGRALLFCDEAEAGSRAAA 206 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A A A+LIGPEGG+ E+ L ++ ++LGPRILR+DTA V+A+ L Q Sbjct: 207 LDAAPAPA---AVLIGPEGGFADAERARLGAMDETRVIALGPRILRADTATVSAITLWQV 263 Query: 240 ICGDW 244 CGDW Sbjct: 264 ACGDW 268 >gi|83854893|ref|ZP_00948423.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1] gi|83842736|gb|EAP81903.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1] Length = 240 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 5/243 (2%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ + RL+VD PL Q HYL V+R G ++LLFNG DGEW ++++ G Sbjct: 1 MNAKI-RLYVDHPLGQGQSVPLDKAQAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAG 59 Query: 63 KSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 K Q++ D+ IF+PIK R D++++K+ EMG I PV + +T Sbjct: 60 KRGGVLVCAEQTKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGR 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 DR++ + + AAEQC +P + L+ L+ W+ ++F DE E E+ Sbjct: 120 VQRDRLQAHAVEAAEQCGGTFVPEVADMVRLDRLIDRWEPERSLMFCDEALAGE---EEG 176 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A A AILIGPEGG+ E+ L L + P++LGPRILR+DTAAVAAM L Q Sbjct: 177 LASARPGPWAILIGPEGGFSDSERVRLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTL 236 Query: 242 GDW 244 GDW Sbjct: 237 GDW 239 >gi|68248905|ref|YP_248017.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae 86-028NP] gi|68057104|gb|AAX87357.1| conserved hypothetical RNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 245 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDT 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|86146407|ref|ZP_01064731.1| hypothetical protein MED222_22541 [Vibrio sp. MED222] gi|85835886|gb|EAQ54020.1| hypothetical protein MED222_22541 [Vibrio sp. MED222] Length = 243 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ + D ++ VLRMKEG +ILLF+G E+ + I+ V K Sbjct: 2 RIPRIHHPERIHQLGSLALGEDAAGHVGRVLRMKEGQDILLFDGSGAEFPATIAEVSKKN 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E RS D+ + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDT 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ T+P I P LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAIAACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + I V +LIGPEGG +EE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PISKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|251788143|ref|YP_003002864.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya zeae Ech1591] gi|247536764|gb|ACT05385.1| protein of unknown function DUF558 [Dickeya zeae Ech1591] Length = 244 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + S D +++ VLRM G + LF+G + + ++I GK Sbjct: 2 RIPRIFHPDTLALLGGEMDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIIQAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R + Q+ ++ + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVRYAAGQTENRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGIKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC +P I P TLE D+ ++ S N Sbjct: 122 GERLEKKISQWQKIAIAACEQCGRNRVPEIRPVQTLESWCAESDNGLKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + +LIGPEGG ++E + F T + LGPR+LR++T A+ A+ Sbjct: 182 TLPL-----PVSRIRLLIGPEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|145638791|ref|ZP_01794400.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII] gi|145272386|gb|EDK12294.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII] gi|309750281|gb|ADO80265.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2866] Length = 245 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ I LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQIELFDGSNHIYPAKIIESNKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 K+S ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGREVADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|319898419|ref|YP_004158512.1| hypothetical protein BARCL_0241 [Bartonella clarridgeiae 73] gi|319402383|emb|CBI75922.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 240 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 111/229 (48%), Positives = 144/229 (62%), Gaps = 2/229 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+++ LKRLFV L + + G Q YL HVLRMKEG ILLFNG+DGEWL+K+++ Sbjct: 1 MRVNYKLKRLFVRQLLALNKEIVIEGQQASYLMHVLRMKEGAKILLFNGQDGEWLAKLTF 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ Q R QTK SD+ Y F+P+K RLDYMIQK+VEMG + P+IT YTQ Sbjct: 61 IKKKFVVVRLINQERLQTKSSDLFYCFAPLKYMRLDYMIQKAVEMGASVLHPIITHYTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I AAEQC IL+LP P L+ L+NWD + F DE S N++ Sbjct: 121 TRINMARIEANIIEAAEQCGILSLPKCAPAVPLKTFLENWDETHALFFCDELSESYNTIP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P + +LIGPEGG+ EE+ L PFV +SLGPRILR+DT Sbjct: 181 LFKKHRTTP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADT 228 >gi|32034407|ref|ZP_00134589.1| COG1385: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207721|ref|YP_001052946.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus pleuropneumoniae L20] gi|165975693|ref|YP_001651286.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149504|ref|YP_001968029.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251645|ref|ZP_07337818.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252796|ref|ZP_07338956.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247218|ref|ZP_07529268.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249446|ref|ZP_07531435.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251763|ref|ZP_07533666.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254000|ref|ZP_07535848.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256261|ref|ZP_07538045.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258455|ref|ZP_07540193.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262823|ref|ZP_07544448.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096513|gb|ABN73341.1| hypothetical protein APL_0233 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875794|gb|ABY68842.1| hypothetical protein APJL_0238 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914635|gb|ACE60887.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648357|gb|EFL78553.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649487|gb|EFL79670.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856276|gb|EFM88429.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858520|gb|EFM90587.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860764|gb|EFM92774.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863026|gb|EFM94972.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865225|gb|EFM97124.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867460|gb|EFM99310.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871838|gb|EFN03557.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 243 Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +T S D +++ VLRM EG+ I+LF+G + + + + VGK Sbjct: 2 RIPRIYHPELLANRTDCILSEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAKIDGSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +EE + F T + LG R+LR++TA++AA+ + Sbjct: 182 LPNV----PEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|289578110|ref|YP_003476737.1| hypothetical protein Thit_0897 [Thermoanaerobacter italicus Ab9] gi|289527823|gb|ADD02175.1| protein of unknown function DUF558 [Thermoanaerobacter italicus Ab9] Length = 245 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 +++ FVD + G H++ +VLR+K+GD I++ +G E+ + I V K + Sbjct: 1 MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDGS-TEYQTSIYGVEKNRV 59 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + +S T+ S + K+++++ +IQK E+G+ P+ITRY+ Sbjct: 60 ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + ++R + A +Q +LP I P + LK + + E + Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFGEALKRIEEFDLCIIPYEKEKTLKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + +I VAI +GPEGG+ EE + +SLGPRILR++TAA++ ++V Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDLALRYS-AKLVSLGPRILRTETAAISVCSIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YELGD 243 >gi|309972536|gb|ADO95737.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2846] Length = 245 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|86356450|ref|YP_468342.1| hypothetical protein RHE_CH00804 [Rhizobium etli CFN 42] gi|86280552|gb|ABC89615.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 245 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV PL +A+ DQ++YLA+VLRM++G ILLFNG+DGEW + +S+ Sbjct: 1 MRANFRMQRLFVYAPLSAGAAVEANADQFNYLANVLRMEDGAEILLFNGRDGEWKATLSF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I +R Q D+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEATRPQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGRLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D++R + AAEQC +L +P + P L LL W +I++ DE +N L Sbjct: 121 KITNLDKLRANVVEAAEQCGVLAIPEVAEPVKLSDLLDRWPSERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 VLAAIQE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225 >gi|167644342|ref|YP_001682005.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter sp. K31] gi|167346772|gb|ABZ69507.1| protein of unknown function DUF558 [Caulobacter sp. K31] Length = 238 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 136/239 (56%), Gaps = 3/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + RLFV PL + + DQ YL V+R+ GD IL+FNG+DGEW ++ GK Sbjct: 1 MIRLFVPHPLKVGAGVAPTVDQSRYLTAVMRLNVGDEILVFNGQDGEWRCGLTEAGKRGC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + E Q+R Q D+ + + +K R++ +++K+ E+G +R TR T + Sbjct: 61 LLRCEEQTREQDHAPDLDLVVAMVKRGRVETIVEKAAELGARRVRLTQTRRTNVDFLKLG 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ I AAEQ L +P I P L+ +L WD ++VF DE + +E + Sbjct: 121 RLDAIAIEAAEQTGRLDVPVIDDPMKLDKILDTWDPARRLVFCDEGGDARTMIEAVTGTG 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE++ L SLPFV P+SLGPRILR+DTAA+AAM L QA GDW Sbjct: 181 AP--AAILIGPEGGFAPEERKRLRSLPFVIPVSLGPRILRADTAAIAAMTLWQAAAGDW 237 >gi|148827457|ref|YP_001292210.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae PittGG] gi|148718699|gb|ABQ99826.1| hypothetical protein CGSHiGG_04330 [Haemophilus influenzae PittGG] Length = 245 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDT 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|145636562|ref|ZP_01792230.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH] gi|145270387|gb|EDK10322.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH] Length = 245 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|332799054|ref|YP_004460553.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter sp. Re1] gi|332696789|gb|AEE91246.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter sp. Re1] Length = 252 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63 + R FV L I Q SG+ H++ VLR + GD I + +G + E + I + G Sbjct: 1 MSRFFVFQDLNINDQITISGEDAHHIIRVLRYQTGDVIHISDGANTESIGVILDIDTQGP 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 S++ K+ +++ ++ + K + D+++QK+ E+G+ P+IT+ T Sbjct: 61 SVKLKIIEKNKVESISPYITLFQGLPKGEKFDWILQKNTEIGVSEFIPIITQRTVVNISP 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--- 174 + +R AA+QC + +P I + + L+ + E Sbjct: 121 SKLGHRKNRWGKIVKEAAKQCMRMDIPKIGDVLSFDLALQEIKKYSLCIIPWENEKEISI 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + ++ ++ I +A+ IG EGG+ +E E + V P+SLGPRILR++TA + A Sbjct: 181 RHIIKDMNENKSISKIAVFIGSEGGFSKDEVEKAKAAGAV-PVSLGPRILRTETAGIVAC 239 Query: 235 ALVQAICGD 243 +++ GD Sbjct: 240 SVLMYEIGD 248 >gi|218528889|ref|YP_002419705.1| hypothetical protein Mchl_0859 [Methylobacterium chloromethanicum CM4] gi|218521192|gb|ACK81777.1| protein of unknown function DUF558 [Methylobacterium chloromethanicum CM4] Length = 250 Score = 264 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 109/240 (45%), Positives = 148/240 (61%), Gaps = 4/240 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW ++I G KS Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR Sbjct: 69 LRVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++ I AAEQC IL++P I P L L + N +VF DE + + L A Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEEASVTDPVAALRGAAD 188 Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 189 PASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|240137404|ref|YP_002961875.1| hypothetical protein MexAM1_META1p0669 [Methylobacterium extorquens AM1] gi|240007372|gb|ACS38598.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 250 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 4/240 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW ++I G KS Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR Sbjct: 69 LRVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-- 184 ++ I AAEQC IL++P I P L L + N +VF DE + + L Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVAALRGAAD 188 Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A+ P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 189 PANPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|145634697|ref|ZP_01790406.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA] gi|145268242|gb|EDK08237.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA] Length = 245 Score = 264 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPDIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|145632547|ref|ZP_01788281.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655] gi|144986742|gb|EDJ93294.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655] Length = 245 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|145640243|ref|ZP_01795827.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae R3021] gi|145274829|gb|EDK14691.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae 22.4-21] Length = 245 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|251793469|ref|YP_003008198.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter aphrophilus NJ8700] gi|247534865|gb|ACS98111.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700] Length = 244 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L T S D +++ VLRM G+++ LF+G + + + I+ VGK Sbjct: 2 RVPRIYHPTALNHLTFCTLSEDGANHVGRVLRMLPGEHLELFDGTNHIYQAVITQVGKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VDVEILSQQFDDRESPLSIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I+A EQC +P I P L+ D ++ S + Sbjct: 122 DRMEKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAEQDDTLKLNLHPRATHSIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG +E FV + LG R+LR++TAA+AA+ + Sbjct: 182 LPAIPAA----GVRLLIGSEGGLSPQEIAQTEQQGFVE-VLLGKRVLRTETAAMAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|16272258|ref|NP_438470.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae Rd KW20] gi|260581228|ref|ZP_05849047.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae RdAW] gi|1176097|sp|P44627|RSME_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|1573272|gb|AAC21968.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092153|gb|EEW76097.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae RdAW] Length = 245 Score = 264 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|71280059|ref|YP_267997.1| 16S ribosomal RNA methyltransferase RsmE [Colwellia psychrerythraea 34H] gi|71145799|gb|AAZ26272.1| conserved hypothetical protein TIGR00046 [Colwellia psychrerythraea 34H] Length = 244 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-I 65 R+F + S D + ++ VLR+KEGD I LFNG++ + + + V K Sbjct: 4 PRIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSA 63 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 KV Q + ++ ++ + +R+D+ +QKSVE+G+ I P+ T + Sbjct: 64 DVKVTSQEENNSESPLNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERCGVKLNAE 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + ISA EQ ++P + P L LK +I + S SL Sbjct: 124 RLEKKRQQWQKIVISACEQSGRASVPIVAEPMLLADWLKQETSALKINLHPKAQHSIMSL 183 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V +LIGPEGG EE + F + LGPR+LR++TAA+ A+ +Q Sbjct: 184 PM-----ENTRVRLLIGPEGGLSDEEITQANDSDF-HDVLLGPRVLRTETAALTAITALQ 237 Query: 239 AICGDWY 245 GD + Sbjct: 238 CRFGDLH 244 >gi|84394071|ref|ZP_00992807.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01] gi|84375313|gb|EAP92224.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01] Length = 243 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+ + D ++ VLRMKEG ++LLF+G E+ + I+ V K Sbjct: 2 RIPRIHHPERIHQLGSLALGEDAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKN 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E RS D+ + +++++ IQKSVE+G I P+I+ Sbjct: 62 VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGANTITPLISERCGVKLDT 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQ T+P I P LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAIAACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + V +LIGPEGG +EE F L LGPR+LR++TAA+ A+ + Sbjct: 182 LPE-----PVSKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|227820965|ref|YP_002824935.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium fredii NGR234] gi|227339964|gb|ACP24182.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 245 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 103/226 (45%), Positives = 148/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV+ PL + +A+ DQ++YL +VLR EG +IL+FNG+DGEW +++S Sbjct: 1 MRANFRMQRLFVESPLHAGARHEATKDQFNYLINVLRFGEGSSILVFNGRDGEWRAELSL 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K + Q+R Q SD+ Y+F+P+KT RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKQLVLTAVEQTRPQPAPSDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+DR+R AAEQC +L +P + P LE LL NW +I+F DE S+N L Sbjct: 121 KLGNLDRLRANVTEAAEQCGVLGIPSVETPRKLEELLANWPRERRIIFCDEGNESQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L I+ +A+LIGPEGG+ E+ LHSL FVT + LGPRILR Sbjct: 181 ILGGISE-RRLALLIGPEGGFSEAERVLLHSLDFVTAVPLGPRILR 225 >gi|153010322|ref|YP_001371536.1| hypothetical protein Oant_2999 [Ochrobactrum anthropi ATCC 49188] gi|151562210|gb|ABS15707.1| protein of unknown function DUF558 [Ochrobactrum anthropi ATCC 49188] Length = 248 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 105/255 (41%), Positives = 152/255 (59%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L Q + + HYL HVLR+K+GD IL FNG+ GEW S++ Sbjct: 1 MRANYKMQRLYVENDLDDGDQIEVAPQAAHYLTHVLRLKDGDEILAFNGRHGEWKSRLKP 60 Query: 61 VGKSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK F + Q+R Q SD+ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGKKRLFLMPFEQTRPQPLASDLVYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR++ I AAEQC +L++P + ++ WD + ++F DE S++ L Sbjct: 121 PRLGADRIKANAIEAAEQCGVLSIPECCEAIRFDRFIEQWDKSRHLIFCDEGYESDDPLT 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L +A P VA+LIGPEGG+ +E++TL +LPFVT + LGPRILR Sbjct: 181 ILQKMAPGP-VALLIGPEGGFSEDERQTLRNLPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQ++ GDW Sbjct: 236 ------LVQSVLGDW 244 >gi|238897814|ref|YP_002923493.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465571|gb|ACQ67345.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 243 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ +P TQ + S + H++ VLRMK G ++ LF+ + + I + K Sbjct: 2 RIPRIYHPYPFFAHTQIELSEEAAHHVIRVLRMKPGQSLYLFHDSNDIIQANIIRIDKKK 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + E ++ + ++ +++Y +QKSVE+G+ ++ P+ + Sbjct: 62 VYVQLKEAILKNNESPLYLHLGQVICRSEKMEYTLQKSVELGVHSVTPLFSERCGVKIDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P IY L + D++ ++ F + N+ Sbjct: 122 ERLQKKIQQWKKIAISACEQCGRNKIPKIYNALPLHNWCAHQDNSLKLNFVPKANNRINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I + V ILIGPEGG ++E F+ P+SLGPR+LR++T A+ A+ + Sbjct: 182 L-----IPPVSRVRILIGPEGGLSNDEIAMAADYEFL-PISLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|152977886|ref|YP_001343515.1| hypothetical protein Asuc_0200 [Actinobacillus succinogenes 130Z] gi|150839609|gb|ABR73580.1| protein of unknown function DUF558 [Actinobacillus succinogenes 130Z] Length = 243 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L ++ + S + +++ VLRM+ G+ + LF+G + + + IS K Sbjct: 2 RVPRIYHPESLLNQSSCRLSEEAANHVGRVLRMQAGEALELFDGSNHIYPAVISRADKKT 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + S ++S + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VTVNIRERISDDRESPLAIHLGQVISRGERMEFTIQKSVELGVKVITPLWSERCGVKLEG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + +SA EQC +P I P L+ D ++ S + Sbjct: 122 DRLAKKIRQWQKIAVSACEQCGRNVIPQIRPMMKLQDWCAENDGALKLNLHPRAQYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A + +LIG EGG +E F T + LG RILR++TAA+ A+ + Sbjct: 182 LPTIPA----EGIRLLIGSEGGLSPQEIALTEQQGF-TEILLGKRILRTETAALTAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|320116218|ref|YP_004186377.1| hypothetical protein Thebr_1425 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319929309|gb|ADV79994.1| protein of unknown function DUF558 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 245 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++++F+D G+ +H+L +VLR+K G+ I+ +G E+ ++I + K + Sbjct: 1 MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + S T+ + ++ K+++++ +IQK E+G+ PV+TRYT Sbjct: 60 ILFLERELESNTESALEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + + R R + A +Q +P I P + E + D + E + Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + + I IGPEGG+ EE E + + P+SLGPRILR++TAA+A ++V Sbjct: 180 EVLKKAKGVKKIGIFIGPEGGFSQEEIELALNKS-IKPVSLGPRILRTETAAIAVCSIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YELGD 243 >gi|301169013|emb|CBW28610.1| predicted protein [Haemophilus influenzae 10810] Length = 245 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|254486640|ref|ZP_05099845.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101] gi|214043509|gb|EEB84147.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101] Length = 240 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 5/243 (2%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ + RL+V+ L Q HYL V+R G +LLFNGKDGEW +++ G Sbjct: 1 MNAKI-RLYVEHGLGQGQSVPLDKAQAHYLFGVMRQAVGAAVLLFNGKDGEWRAEVVEAG 59 Query: 63 KSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 K + Q++ D+ IF+PIK R D++++K+ EMG I PV T +T Sbjct: 60 KRGGVLQCVAQTKPLQMPPDLWLIFAPIKKTRTDFIVEKAAEMGARRIVPVQTDFTNAGR 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 DR++ + + AAEQC + + L+ L+ WD ++F DE + + Sbjct: 120 VQRDRLQAHAVEAAEQCGATFVAEVTEMVKLDRLIDQWDAGRSLMFCDEALAGS---DAV 176 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + ILIGPEGG+ E+ L L + ++LGPRILR+DTAAVAAM + Q Sbjct: 177 LGQSGRGAWGILIGPEGGFSDRERSRLRGLEYARSVTLGPRILRADTAAVAAMTVWQQAF 236 Query: 242 GDW 244 GDW Sbjct: 237 GDW 239 >gi|103487756|ref|YP_617317.1| 16S ribosomal RNA methyltransferase RsmE [Sphingopyxis alaskensis RB2256] gi|98977833|gb|ABF53984.1| protein of unknown function DUF558 [Sphingopyxis alaskensis RB2256] Length = 249 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 6/238 (2%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 RLF+D PL + G HYL V+R+K GD +LLF+ + GEWL+ ++ K S+ Sbjct: 13 PRLFIDQPLGAGSAPVIDGAAAHYLLGVMRLKAGDPVLLFDNRSGEWLAVVADAAKRSVT 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++E R D+ F+P+K RLD++I+K+ E+G+ ++PV+T T +R Sbjct: 73 LRIERHMRDIEAVPDLWLCFAPVKKARLDWIIEKATELGVRRLQPVMTERTIVERVRRER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I A EQC LP + P L LLK W ++FADE G + +A Sbjct: 133 LEAQIIEACEQCGRTALPALAEPVKLPQLLKAWPAERALLFADEAGGV-----PMARLAA 187 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AIL GPEGG+ E+ L + P V L+LGPRILR++TAA+AA +L A GDW Sbjct: 188 PAPAAILTGPEGGFTDRERALLAAHPAVHRLALGPRILRAETAAIAATSLWMAQHGDW 245 >gi|15603733|ref|NP_246807.1| hypothetical protein PM1868 [Pasteurella multocida subsp. multocida str. Pm70] gi|12722296|gb|AAK03952.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 244 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + S D +++ VLRM+ GD ++LF+G + + ++I+ + K Sbjct: 2 RIPRIYHPVLLQGVKHCELSEDAANHVGRVLRMQAGDKLVLFDGSNHVYDAQITQISKKH 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q + ++S ++ + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VEVDILQHQWDDRESPLKIHLGQVISRGERMEFTIQKSVELGVHVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ++A EQC +P I P L+ D ++ S + Sbjct: 122 DRLEKKIQQWQKIAVAACEQCGRNVVPEIRPMMKLQDWCAEKDGALKLNLHPRAQYSIRT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F+ + LG R+LR++TA++AA+ + Sbjct: 182 LPDIPAA----GVRLLIGSEGGLSAQEIAQTEQQDFIE-VLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|294142457|ref|YP_003558435.1| hypothetical protein SVI_3686 [Shewanella violacea DSS12] gi|293328926|dbj|BAJ03657.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 242 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ D PL + + ++ VLRM +G+ I LFNG + ++L++I K Sbjct: 2 RIPRIYQDSPLAVGDTLALHDEAASHIGRVLRMSQGEQISLFNGSEHDYLAEIISASKKN 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + K+ S + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 62 VSVKILSSSINSSESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I A EQ +P I P +LE + ++ Sbjct: 122 ERLEKKIHQWQKIVIGACEQSGRSRVPEIRPAMSLEAWCGEQTDSLKLNLHPRASHGIQG 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L +P V +LIGPEGG E F T + LGPR+LR++TAA+ A++ + Sbjct: 182 LSL-----DVPKVRLLIGPEGGLSETEILKTEQDKF-TDILLGPRVLRTETAALTAISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QLKFGD 241 >gi|56461316|ref|YP_156597.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina loihiensis L2TR] gi|56180326|gb|AAV83048.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR] Length = 243 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ + ++ + + S D + +L VLR+ GD+I+LFNG + +KI+ V K Sbjct: 2 RVPRIYHPASISLQNETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKS 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V S++ +S V + + + +R+D+++QKSVE+G+ I P+ + Sbjct: 62 AQFVATSSQANASESPVNIHLAQVVSRGDRMDFVLQKSVELGVTEITPLFSERCGVKLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + SA EQC +P + P L + + ++ +S Sbjct: 122 DRLEKKQLQWQKIVHSACEQCGRSVVPQVKPAQQLTDFIASSFEGLRLTLDPTATQPLSS 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ + +LIGPEGG+ E L F P+ LGPRILR++TAA++A+ V Sbjct: 182 FQQAE-----KGIQLLIGPEGGFTDTEVSAAGQLGF-KPMRLGPRILRTETAALSALTAV 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QYQFGD 241 >gi|239995591|ref|ZP_04716115.1| hypothetical protein AmacA2_14079 [Alteromonas macleodii ATCC 27126] Length = 242 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 + R++ P+ ++ + + + H++A VLR+K I+LFNG E+ ++I V K Sbjct: 2 RIPRVYYPNPIPLEQEFELTEGAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRKK 61 Query: 65 IRFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + S ++ + K +R+D ++QKSVE+G+ I PVIT Sbjct: 62 VTVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERCTVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I A EQ +P + P +L L + + ++V A G+E S Sbjct: 122 SRWEKKIQQWQKIIIGACEQSGRNIIPALNAPVSLNQWLSSSTNTTRLVLAP---GAEQS 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +LIGPEGG E + + +SLGPRILR++TAA+ +++++ Sbjct: 179 LA--RQPYNAQGFRLLIGPEGGLSETEVHQANENGY-QSVSLGPRILRTETAAITSLSIL 235 Query: 238 QAICGDW 244 QA GD+ Sbjct: 236 QAQHGDF 242 >gi|302381943|ref|YP_003817766.1| hypothetical protein Bresu_0829 [Brevundimonas subvibrioides ATCC 15264] gi|302192571|gb|ADL00143.1| protein of unknown function DUF558 [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 5/239 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + RL V PL + DQ YL V+R+K GD++L+FNG+DGEW + + + K + Sbjct: 1 MIRLHVTQPLAPGAAVAPTLDQSRYLTQVMRLKLGDDLLVFNGRDGEWRATLVEILKKGV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + E Q R Q D++ I + +K +R++ +++K+ E+G +R IT+ T H +D Sbjct: 61 ILRAEDQVRPQAYGPDLELIVAVVKKSRVETIVEKAAELGAARVRLTITQRTNVDHVRLD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ I AAEQ L +P + P L LL WD + +++F DET G+ A+ Sbjct: 121 RLDAIAIEAAEQTGRLDVPTVDDPQKLGALLDGWDPSRRLMFCDETGGA----PVASAVT 176 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE++ L +LPF T +SLGPRILR+DTAA+AAM L QA GDW Sbjct: 177 ESGPWAILIGPEGGFSPEERDRLRALPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 235 >gi|291549888|emb|CBL26150.1| RNA methyltransferase, RsmE family [Ruminococcus torques L2-14] Length = 255 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 ++ F D Q + +G +++ +VLRMK G+ + + +G+ ++ + Y K Sbjct: 1 MQHFFADPSCVDGEQIRLAGSDVNHMKNVLRMKPGEEVWVSDGEGMDYFCSVEGYEEKEA 60 Query: 66 RFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V + SQT+ S + K +++++++QK+VE+G I P + + + Sbjct: 61 VLRVVKKEVSQTELASRLILFQGLPKGDKMEWIVQKAVELGAYRIVPFAAKRSVVKLDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 +R + AAEQ +P + + + + + +V + G + + Sbjct: 121 KAGKKRERWQAIAKGAAEQSKRGIVPQVQDVMSFQEAMNYAKELDVVLVPYELQEGMKAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + I +V I IGPEGG+ E E + P++LG RILR++TA + ++++ Sbjct: 181 EAVISKIEPGQSVGIFIGPEGGFDESEIEQAKEAGAI-PITLGKRILRTETAGLTTLSIL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|261823140|ref|YP_003261246.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium wasabiae WPP163] gi|261607153|gb|ACX89639.1| protein of unknown function DUF558 [Pectobacterium wasabiae WPP163] Length = 244 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + + S D +++ VLRM G ++ LF+G + + ++I GK Sbjct: 2 RVPRIFHPETLPLNGGEVELSDDAANHVGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKK 61 Query: 65 -IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R V + + + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVSVTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + ++A EQ +P + P TLE D+ ++ S N Sbjct: 122 AERMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG + E F T + LGPR+LR++T A+ AM Sbjct: 182 TLPL-----PVDRVRLLIGPEGGLTATEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|85708013|ref|ZP_01039079.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1] gi|85689547|gb|EAQ29550.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1] Length = 253 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 127/238 (53%), Gaps = 4/238 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV+ L G+Q HYL V+R+ GD ++L + GEW +++ V K + Sbjct: 13 PRLFVEDELGDGRIFALEGNQAHYLGKVMRVSPGDTVILCDNITGEWAARVGQVEKRRVD 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V R + + D+ + +K +R D++++K+ E+G I+P+ITR NM+R Sbjct: 73 LTVTDHLRPRGEVPDLWLCPALLKKDRFDFVLEKATELGSARIQPMITRRCVADKLNMER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R AAEQC LP I P L+ LL +W I FADE G E++ + Sbjct: 133 ARIIATEAAEQCARTALPDIAEPVKLDALLADWPSERAIFFADEE-GGEHAADAFCFHEG 191 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ E+ + + P +SLGPRILR +TAA+AA+++ A GDW Sbjct: 192 P--AAILIGPEGGFDDAERAAIRAHPQARAISLGPRILRGETAAIAALSVWMAEAGDW 247 >gi|288957600|ref|YP_003447941.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp. B510] gi|288909908|dbj|BAI71397.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp. B510] Length = 259 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 134/237 (56%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RL+VD PL ++ H+L HVLR+ GD + +FNG+DGEW + I GK Sbjct: 8 RLYVDSPLAEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGWCSL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R Q D+ +F+P+K R+D++ +K+ EMG+ + PV TR T N+DR+ Sbjct: 68 TLAEQRREQDTGPDLWLVFAPLKKGRIDFVAEKATEMGVSRLCPVFTRRTDPNRVNLDRL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R + AAEQC+ L++P + L+ L W ++ E + E L A Sbjct: 128 RANAVEAAEQCERLSVPDLADALPLDRALAAWPAERRLYLCAEAGAARPIAEVLRDAAAG 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P A+L+GPEGG+ E + L LPFV P+ LGPRILR+DTA VAA+A Q++ GDW Sbjct: 188 P-AALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQSLAGDW 243 >gi|148825417|ref|YP_001290170.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae PittEE] gi|229846392|ref|ZP_04466500.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae 7P49H1] gi|148715577|gb|ABQ97787.1| hypothetical protein CGSHiEE_01535 [Haemophilus influenzae PittEE] gi|229810485|gb|EEP46203.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae 7P49H1] Length = 245 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 KVE R + + + R+++ IQKSVE+G+ I P+ + Sbjct: 61 SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC ++P I P L+ D ++ S Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIK 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIG EGG ++E F T + LG R+LR++TA++AA+ Sbjct: 181 TLPTIPS----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQICFGD 242 >gi|49475195|ref|YP_033236.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1] gi|49238000|emb|CAF27205.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1] Length = 247 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 107/226 (47%), Positives = 142/226 (62%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ PL I + K G Q Y+ HVLRM+EG ILLFNG+DGEWL+K+ Sbjct: 1 MRINYKLKRLFIRQPLVINEKIKIEGPQAFYIVHVLRMQEGAEILLFNGQDGEWLAKLIT 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K + ++ +Q R QT S++ Y F+P+KT RLDYM+QK+VEMG+ ++PVIT +TQ Sbjct: 61 IKKKFVVVQLIHQERFQTALSNLIYCFAPLKTARLDYMVQKAVEMGVSVLQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ + + A+EQC IL+LP P +L LL WD + F DET S N L Sbjct: 121 TRINMARMESNVVEASEQCGILSLPECVPAVSLAELLARWDETQPLFFCDETHKSHNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + ILIGPEGG+ EE+ L PFV + LGPRILR Sbjct: 181 LFKKREMLAP-GILIGPEGGFSQEERSFLKKHPFVISIPLGPRILR 225 >gi|326389861|ref|ZP_08211425.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus JW 200] gi|325994129|gb|EGD52557.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus JW 200] Length = 245 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++++F+D G+ +H+L +VLR+K G+ I+ +G E+ ++I + K + Sbjct: 1 MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + S T+ + ++ K+++++ +IQK E+G+ PV+TRYT Sbjct: 60 ILFLERELESNTESALEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + + R R + A +Q +P I P + E + D + E + Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + + I IGPEGG+ EE E + + P+SLGPRILR++TAA+A ++V Sbjct: 180 EVLEKAKGVKKIGIFIGPEGGFSQEEIELALNKS-IKPVSLGPRILRTETAAIAVCSIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YELGD 243 >gi|307260690|ref|ZP_07542380.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869611|gb|EFN01398.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 243 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +T S D +++ VLRM EG+ I+LF+G + + + + VGK Sbjct: 2 RIPRIYHPELLANRTDCILSEDATNHVGRVLRMTEGEQIILFDGSNHIFHTTLQAVGKKQ 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S ++S++ + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 IIAKIDGSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L K D ++ + Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIG EGG +EE + F T + LG R+LR++TA++AA+ + Sbjct: 182 LPNV----PEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QVCFGD 242 >gi|182679209|ref|YP_001833355.1| hypothetical protein Bind_2249 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635092|gb|ACB95866.1| protein of unknown function DUF558 [Beijerinckia indica subsp. indica ATCC 9039] Length = 250 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 143/239 (59%), Gaps = 6/239 (2%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RL++D PL Q HYL VLR+ GD+IL+FNG++GEW + + G K+++ Sbjct: 9 PRLYLDQPLRAGGTVALDKSQAHYLCTVLRLVAGDHILVFNGREGEWRAALKESGRKTVQ 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + Q R+Q +D+ Y+F+P+K RLDYM QK+VEMG ++P+ TR TQN N++R Sbjct: 69 IEPIEQVRTQEPDNDLHYLFAPLKHARLDYMAQKAVEMGASLLQPLFTRRTQNERINLER 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC ILTLP I L+ L D N +VF DE L L Sbjct: 129 LRANAIEAAEQCGILTLPEIAEAVKLDAYLARRDQNRVLVFCDEDAPPIGPLAALREALR 188 Query: 187 IPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 VA +LIGPEGG+ + E++ L S P +SLGPRILR+DTAAVA +ALVQAI Sbjct: 189 PGGVACRGADVLIGPEGGFDATERDLLVSQPNHIRISLGPRILRADTAAVAVLALVQAI 247 >gi|229845005|ref|ZP_04465142.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae 6P18H1] gi|229812139|gb|EEP47831.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae 6P18H1] Length = 245 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA+++A++ + Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLSAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|319775828|ref|YP_004138316.1| RNA methyltransferase [Haemophilus influenzae F3047] gi|319896636|ref|YP_004134829.1| RNA methyltransferase [Haemophilus influenzae F3031] gi|329123672|ref|ZP_08252232.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116] gi|317432138|emb|CBY80489.1| conserved hypothetical RNA methyltransferase [Haemophilus influenzae F3031] gi|317450419|emb|CBY86635.1| conserved hypothetical RNA methyltransferase [Haemophilus influenzae F3047] gi|327469871|gb|EGF15336.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116] Length = 245 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R+++ IQKSVE+G+ I P+ + Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC ++P I P L+ D ++ S + Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236 Query: 238 QAICGD 243 Q GD Sbjct: 237 QICFGD 242 >gi|212637179|ref|YP_002313704.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella piezotolerans WP3] gi|212558663|gb|ACJ31117.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 261 Score = 262 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L I + ++ VLRM G+ + LFNG +L++I K Sbjct: 20 RVPRIYQASSLAIDETVSLHEEAAGHVGRVLRMAAGEQVCLFNGDGNNYLAEILSASKKN 79 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S +S + + + +R+D+ IQKSVE+G+ I P+ + Sbjct: 80 VAVKVLSCESNDSESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 139 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + +SA EQ +P I P L + +I N Sbjct: 140 ERLEKKIQQWQKIVVSACEQSGRSVVPVIRPAMQLSDWCAEETSSLKINLHPRASHGVNG 199 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L V ++IGPEGG + E + F T + LGPR+LR++TAA+ + + Sbjct: 200 L-----CLPNNRVRLVIGPEGGLSATEITMTETHKF-TDVLLGPRVLRTETAALTTITAL 253 Query: 238 QAICGD 243 Q GD Sbjct: 254 QLKFGD 259 >gi|229597123|ref|YP_001609040.2| 16S ribosomal RNA methyltransferase RsmE [Bartonella tribocorum CIP 105476] Length = 247 Score = 262 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+I+ LKRLF+ L + + K G Q YL HVLRMKEG IL+FNG+DGEWL+K+ Sbjct: 1 MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 V K + ++ +Q R QT S++ Y F+P+K RLDYM+QK+VEMG ++PVIT +TQ Sbjct: 61 VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 T NM R+ I A+EQC IL+LP +L LL+ WD + F DE S N L Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ +LIGPEGG+ EE+ L PFV P+SLGPRILR Sbjct: 181 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILR 225 >gi|119475424|ref|ZP_01615777.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium HTCC2143] gi|119451627|gb|EAW32860.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium HTCC2143] Length = 241 Score = 262 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L + H+L+ VLR+K G +++LFNG ++ I+ +GK Sbjct: 2 RISRIYTQATLQASQSVELEEKPSHHLSKVLRLKVGSDVILFNGDGYDYSGHINAIGKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + ++ + ++ S + + K +R+D++IQKS E+G+ I P++T T+ Sbjct: 62 VGIYIDSREIKHSESSLKIHLGVAVSKGDRMDWIIQKSTELGVDEITPLLTERTELKLKG 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ISA EQ LP I L ++ + + V + Sbjct: 122 DRKEKKQHHWQQIAISACEQSGRAQLPSINRIQHLSEWIQTIEATRKFVLHHRSTA---- 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L++ + + +LIGPEGG +E F L LGPRILR++TA +AA++++ Sbjct: 178 --LLNSNDDVSSACLLIGPEGGLSEDEIALAEHYHF-DALQLGPRILRTETAPLAAISIL 234 Query: 238 QAICGD 243 Q GD Sbjct: 235 QHHWGD 240 >gi|83950615|ref|ZP_00959348.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM] gi|83838514|gb|EAP77810.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM] Length = 234 Score = 262 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83 DQ +YL +V+R+ +G ++ LFNG+DG W ++++ GK +V Q+ Q D+ Sbjct: 2 DRDQANYLFNVMRLDQGASVTLFNGRDGAWRAEVAERGKRGGALQVAEQTAPQRNPPDLW 61 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +F+PIK R D++++K+ EMG I PV T +T + DR++ + I AAEQC + Sbjct: 62 LLFAPIKKARTDFIVEKAAEMGASRILPVQTEFTNSERIRQDRLQAHAIEAAEQCGGTFV 121 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK---LHAIAHIPNVAILIGPEGGY 200 P + L+ LL +W Q++F DE S + AILIGPEGG+ Sbjct: 122 PEVADLARLDRLLSDWPEERQLMFCDEALFDRPSPLTNGDATSSGTGTPWAILIGPEGGF 181 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E+ LH+LPF P+SLGPRILR+DTAAVAAM L Q GDW Sbjct: 182 SDAERSRLHALPFAHPVSLGPRILRADTAAVAAMTLWQDRLGDW 225 >gi|242237998|ref|YP_002986179.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya dadantii Ech703] gi|242130055|gb|ACS84357.1| protein of unknown function DUF558 [Dickeya dadantii Ech703] Length = 244 Score = 262 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + S D +++ VLRM G + LF+G + + ++I GK Sbjct: 2 RIPRIFHPELLALHGGETDLSEDAANHVGRVLRMTAGQALQLFDGSNQVFDAEILQTGKK 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 R + +S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 SVCVRYAAGRVEDCESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + ISA EQC +P I P TLE D+ ++ S N Sbjct: 122 GDRLDKKIAQWQNIAISACEQCGRNRIPEIRPAMTLESWCAESDNGLKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L I + +LIGPEGG S E + F T + LGPR+LR++T A+ A+ Sbjct: 182 TLSL-----PISRIRLLIGPEGGLSSGEIAMTAAQGF-TDILLGPRVLRTETTALTAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|300853987|ref|YP_003778971.1| hypothetical protein CLJU_c08010 [Clostridium ljungdahlii DSM 13528] gi|300434102|gb|ADK13869.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 251 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV G+ ++ VLR+K GD I + N E+L I + K Sbjct: 1 MNKFFVPQEDINFNTAYIRGEDVKHIRKVLRLKCGDKININNCNGKEFLGAIEKIDKDEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 +E + + + K+ ++D ++QK+VE+G+ I PV+T + Sbjct: 61 VVNIIEELTLYNESKIKIYLFQGLPKSGKMDLIVQKAVELGVYEITPVVTSRVVVKNDSG 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 +DR A +QC +P + P + + LL ++ IV E G + Sbjct: 121 EFKKVDRWNKIAKEACKQCKRSIIPKVNVPISFKELLSEGEYMDVIVVPYENESNTGIKK 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + +++ +AI+IGPEGG+ +E + L ++ +LGPRILR++TA ++L Sbjct: 181 IVNSIKDKSNLEKIAIVIGPEGGFEEQEIDELKNIN-SHIATLGPRILRTETAGFVCISL 239 Query: 237 VQAICGD 243 + GD Sbjct: 240 IMYELGD 246 >gi|256821459|ref|YP_003145422.1| hypothetical protein Kkor_0233 [Kangiella koreensis DSM 16069] gi|256794998|gb|ACV25654.1| protein of unknown function DUF558 [Kangiella koreensis DSM 16069] Length = 242 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F L + T+ + +++ VLRM G I LFNG + ++I + ++ Sbjct: 2 RVPRIFTSEALSLSTEMALDKEASTHISRVLRMNTGQQIELFNGDGFSYFAQIQAIERNQ 61 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 VE + ++ + ++++ +QK VE+G+ P+IT Sbjct: 62 VSVRVVEAIEVNNESPLNIHLFQGISRGDKMELTLQKGVELGVKQFTPLITERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + SA EQC ++P +YP L+ L ++ + D S++S Sbjct: 122 KRWQKKLQHWQKVIESACEQCGRNSIPSLYPAVKLQDALSQLNNTSFFMHPD----SKHS 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + A A + + +GPEGG+ EE E + S P+ LGPRILR++TAA+AA++++ Sbjct: 178 FKTIIADAQ-SELQLWVGPEGGFSDEEVEWVESHG-CKPVQLGPRILRTETAALAAVSVM 235 Query: 238 QAICGDW 244 ++ GD+ Sbjct: 236 NSLWGDF 242 >gi|332305394|ref|YP_004433245.1| hypothetical protein Glaag_1016 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172723|gb|AEE21977.1| protein of unknown function DUF558 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 242 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R++ L + + D +++A+VLR K G ++LFNG E+ + V K Sbjct: 2 RISRIYHPGALHSDQVLELTSDASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRK 61 Query: 65 IRFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R +++ + S S + + +R+D ++QKSVE+G+ I P+IT Sbjct: 62 VRVQIDAKLSISLESPLSIHLGQGISRGDRMDLVLQKSVELGVTEITPLITERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + + I+A EQC +P ++ PT + + ++ S Sbjct: 122 QRWQKKHAQWQKIIIAACEQCGRNVIPTLHMPTEFQAWVNQSTPALRLTLHPRAEKSFR- 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 H V +LIGPEGG+ +E F T + LGPR+LR++TAA+ A++ + Sbjct: 181 ----HTAVGSDGVRLLIGPEGGFSDQELYQTEQGGFHT-VQLGPRVLRTETAAITAISAL 235 Query: 238 QAICGD 243 QAI GD Sbjct: 236 QAIYGD 241 >gi|85059999|ref|YP_455701.1| hypothetical protein SG2021 [Sodalis glossinidius str. 'morsitans'] gi|84780519|dbj|BAE75296.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 243 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + T D H+++ VLRM I LF+G + + ++++ V K Sbjct: 2 RIPRIYHPAPLTVGTVLALGDDAAHHVSRVLRMTVDAPIALFDGSNHVFAARLTRVDKKG 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VEATVLATQMEDRESLLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSARCGVKLEG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I A EQC L I P TLE + ++ S N+ Sbjct: 122 ERLEKKLQQWHKIAIGACEQCGRNRLAEIRPAMTLEAWCAEQEAGLKLNLHPRAQQSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +LIGPEGG +EE + F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PAHGIRLLIGPEGGLSAEEIALTANYGF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|39934226|ref|NP_946502.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris CGA009] gi|39648074|emb|CAE26594.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 251 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 145/246 (58%), Gaps = 3/246 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RLFVD L Q DQ +YL +VLR+ G +L FNG+DGEW + I+ Sbjct: 3 RYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGR 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + +V Q+R Q + DV Y+F+P+K RLDYM QK+VEMG G ++PV+T++TQ Sbjct: 63 KRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSL-- 178 N DR+R I AAEQC IL+L + P L+ L + +VF DE + + Sbjct: 123 LNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLAGRANGERLLVFCDEDAEIADPVAA 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + A V +L+GPEGG+ +EE+ L P + L+LGPRI+R+DTAAVAA+ LVQ Sbjct: 183 LQAARDAAARGVDLLVGPEGGFSTEERALLLKQPAILRLALGPRIMRADTAAVAALTLVQ 242 Query: 239 AICGDW 244 A+ GDW Sbjct: 243 AVLGDW 248 >gi|253690071|ref|YP_003019261.1| hypothetical protein PC1_3710 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756649|gb|ACT14725.1| protein of unknown function DUF558 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 244 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + + S D +++ VLRM G + LF+G + + ++I GK Sbjct: 2 RVPRIFHPDTLPLNGGEVELSDDAANHVGRVLRMNTGQALQLFDGSNHVFDAEIIAAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R + ++ + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVHFTAGKLENKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +++ + I+A EQ +P + P TLE D ++ S N Sbjct: 122 AERMEKKINQWQKIAIAACEQSGRNCVPLVRPAMTLEAWCAEQDSALKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG + E F T + LGPR+LR++T A+ AM Sbjct: 182 TLPL-----PVDRVRLLIGPEGGLTASEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|254510112|ref|ZP_05122179.1| surface protein [Rhodobacteraceae bacterium KLH11] gi|221533823|gb|EEE36811.1| surface protein [Rhodobacteraceae bacterium KLH11] Length = 229 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQ 76 + DQ HYL V+R+ G + LFNG+DGEWLS+++ GK Q++ Sbjct: 3 PGQSVPLTRDQAHYLFGVMRLSVGARVALFNGQDGEWLSEVAEAGKRGGVLGCIAQTKPL 62 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 D+ +F+PIK R D++++K+ EMG I PV T +T + DR++ + + AAE Sbjct: 63 QLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRLQAHAVEAAE 122 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +P + L+ +L W Q++F DE S +L AILIGP Sbjct: 123 QCGGTFVPEVAELQRLDRVLDAWPETRQLMFCDEAEVG--SALRLAKQEQNQPWAILIGP 180 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG+ +E++ L +LP+ +SLGPRILR+DTA VAAM + Q GDW Sbjct: 181 EGGFSDKERKRLAALPYSHTVSLGPRILRADTAVVAAMTMWQQALGDW 228 >gi|145631448|ref|ZP_01787218.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae R3021] gi|144982985|gb|EDJ90494.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae R3021] Length = 245 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCLLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 KVE R + + + R+++ IQKSVE+G+ I P+ + Sbjct: 61 SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC ++P I P L+ D ++ S Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIK 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIG EGG ++E F T + LG R+LR++TA++AA+ Sbjct: 181 TLPTIPS----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQICFGD 242 >gi|222106772|ref|YP_002547563.1| hypothetical protein Avi_5780 [Agrobacterium vitis S4] gi|221737951|gb|ACM38847.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 245 Score = 261 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 149/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+VD L + +QY+YLA+VLR+ EG +L+FNG+DGEW + +++ Sbjct: 1 MRANYKMQRLYVDAGLEAANPVATTPEQYNYLANVLRLTEGAEVLVFNGRDGEWKASLAF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I + Q+R Q + SD+ ++F+P+K R+DY++QK+VEMG GA++PV+T++ Q Sbjct: 61 PTRKRIALIPQSQTRPQPRPSDLTFLFAPLKVGRMDYLVQKAVEMGAGALQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++R++ I AAEQC IL++P + P L+ LL+ W +I+F DE ++N + Sbjct: 121 RIGSIERLQANVIEAAEQCGILSVPKVAPLVKLKDLLETWPATHRIIFCDEDSATDNPMP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L AI +A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 ALAAIEERQ-LALLVGPEGGFSDEERSLLRSLGFVTAIPLGPRILR 225 >gi|254559584|ref|YP_003066679.1| hypothetical protein METDI1041 [Methylobacterium extorquens DM4] gi|254266862|emb|CAX22661.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 250 Score = 261 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 108/240 (45%), Positives = 149/240 (62%), Gaps = 4/240 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW +++ G KS Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAELVPQGRKSAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR Sbjct: 69 LRVVVQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-- 184 ++ I AAEQC IL++P I P L L + N +VF DE + + L Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPGCLDALEANRLLVFCDEDASVTDPVAALRGAAD 188 Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A+ P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ GD Sbjct: 189 PANPPPLAVLVGPEGGFHAEERALIAARPNTVVLSLGPRILRADTAAVAVLALVQAVLGD 248 >gi|296133940|ref|YP_003641187.1| protein of unknown function DUF558 [Thermincola sp. JR] gi|296032518|gb|ADG83286.1| protein of unknown function DUF558 [Thermincola potens JR] Length = 249 Score = 261 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 9/245 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + R FV Q G +++ VLRM+ GD + L + E+ ++I+ + + I Sbjct: 1 MARFFVKDEQVKGVQVFIVGSDVRHISKVLRMRPGDCLTLIDEAGTEYEARITQIAPERI 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ ++ + +V K ++L+ +IQK VE+G+ I PV + + Sbjct: 61 TCEIVTETSVNREPPLEVILCQGLPKGDKLELIIQKGVELGVTRIIPVSCTRSVVQLTEE 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + + AA+QC +P + P T + L+ V E Sbjct: 121 KAAKRRERWQRVALEAAKQCRRNKVPEVSPLTGFDEALQLIPDGVLAVIPWEDAVGTGLK 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L + + V I IGPEGG+ E E V P++LG RILR++TA +AA+ +V Sbjct: 181 KVLRSYNNRGQVWIFIGPEGGFTEAEIEKAKGKG-VVPVTLGRRILRAETAGIAAITMVL 239 Query: 239 AICGD 243 GD Sbjct: 240 YQLGD 244 >gi|16127645|ref|NP_422209.1| hypothetical protein CC_3415 [Caulobacter crescentus CB15] gi|221236464|ref|YP_002518901.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter crescentus NA1000] gi|13425129|gb|AAK25377.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965637|gb|ACL96993.1| surface protein [Caulobacter crescentus NA1000] Length = 238 Score = 261 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 132/239 (55%), Gaps = 3/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + RLFV L + DQ YL V+R+ G +LLFNG+DGEW + + K Sbjct: 1 MIRLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGAELLLFNGRDGEWRATLVEATKRGC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 K E Q+R T D+ I + +K R++ +++K+ E+G +R ITR T + Sbjct: 61 LLKAEEQTRPMTLGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLG 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ + AAEQ L +P + P L+ +L WD ++VF DE + +E L Sbjct: 121 RLDAIAMEAAEQTGRLDVPEVADPEKLDKILDAWDPARRLVFCDEGGDARPMIEALSGTT 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE+E L L FVTP+SLGPRILR+DTAA++AM L QA GDW Sbjct: 181 GP--AAILIGPEGGFAPEERERLRGLAFVTPVSLGPRILRADTAAISAMTLWQAAAGDW 237 >gi|126734662|ref|ZP_01750408.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2] gi|126715217|gb|EBA12082.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2] Length = 244 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 6/246 (2%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 +++ + RL+VD L S +Q HYL V+R+ EG + L NG+DG W + + Sbjct: 2 VRLMASKVRLYVDHALGQGQSVPLSREQAHYLFGVMRLAEGAVLSLINGRDGAWDADVVK 61 Query: 61 VGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 GK + Q+ DV +F+PI+ R ++++K+VEMG+ + PV T +TQ+ Sbjct: 62 AGKKGGILECSAQTGPLQMPPDVWLLFAPIRKERTAFIVEKAVEMGVSRVCPVQTDFTQS 121 Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D+++T+ I AAEQC +P + L+ LL W + Q++F DE + Sbjct: 122 ANRVRQDKLQTHAIEAAEQCGGTFVPPVDDLAKLDRLLAAWPEDRQLMFCDEVLIGDRVG 181 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L AILIGPEGG+ E++ L LPF P+SLGPRILR+DTAAVAA+ + Q Sbjct: 182 LPLVE----GPWAILIGPEGGFSPAERDRLRGLPFAHPVSLGPRILRADTAAVAALTVWQ 237 Query: 239 AICGDW 244 GDW Sbjct: 238 QALGDW 243 >gi|239833512|ref|ZP_04681840.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239821575|gb|EEQ93144.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 248 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 108/256 (42%), Positives = 152/256 (59%), Gaps = 24/256 (9%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RL+V+ L +Q + + HYL HVLR+KEGD IL FNG+DGEW S++ Sbjct: 1 MRANYKMQRLYVENDLQSGSQIEVASQAAHYLTHVLRLKEGDEILAFNGRDGEWKSRLRP 60 Query: 61 VGKSIRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 GK R +E Q+R Q SD+ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGKK-RLFLEPFDQTRPQPPASDLIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQ 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 DR+R I AAEQC +L+LP + ++ WD ++F DE S++ L Sbjct: 120 VPKLGTDRIRVNAIEAAEQCGVLSLPACRETIRFDRFIEQWDETRHLIFCDEGHESDDPL 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDT 228 L A+ P A+LIGPEGG+ +E++TL LP+VT + LGPRILR Sbjct: 180 TILQAMKPGP-AALLIGPEGGFSEDERQTLRRLPYVTAIPLGPRILRADTAAVAAMA--- 235 Query: 229 AAVAAMALVQAICGDW 244 LVQ++ GDW Sbjct: 236 -------LVQSVLGDW 244 >gi|229107039|ref|NP_699939.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis 1330] Length = 248 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 104/255 (40%), Positives = 148/255 (58%), Gaps = 22/255 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++R +V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + Sbjct: 1 MRANYRMQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 G K + + Q+R Q K S++ Y F+P+K +LDYM+QK+VEMG G ++PVIT++TQ Sbjct: 61 EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R+R I AAEQC +L+LP + L WD + +++F DE S++ L Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229 L + P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235 Query: 230 AVAAMALVQAICGDW 244 LVQA+ GDW Sbjct: 236 ------LVQAVLGDW 244 >gi|229259630|ref|NP_107316.2| 16S ribosomal RNA methyltransferase RsmE [Mesorhizobium loti MAFF303099] Length = 244 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 100/226 (44%), Positives = 141/226 (62%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV L + A Q HYL HVLR+ EG ILLFNG+DGEW + I+ Sbjct: 1 MRANYKMQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAA 60 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K +R +V+ R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ Sbjct: 61 KSKKAVRLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++DR+R + AAEQC IL +P + E LL WD ++VF DE + N L Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L A+ +A+L+GPEGG+ +E++ L +LPFVT + LGPRILR Sbjct: 181 ALRAVKE-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILR 225 >gi|227115169|ref|ZP_03828825.1| hypothetical protein PcarbP_19518 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + + S D +++ VLRM G ++ LF+G + + ++I GK Sbjct: 2 RVPRIFHPDTLPLNGGEVELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R + + + + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVRFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQ +P + P TLE D+ ++ S N Sbjct: 122 AERMEKKISQWQKIAIAACEQSGRNCVPQVRPAMTLEAWCAEQDNALKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG + E F T + LGPR+LR++T A+ AM Sbjct: 182 TLPL-----PVARVRLLIGPEGGLTASEITMTSEYGF-TDILLGPRVLRTETTALTAMTA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus nasoniae] Length = 245 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 14/249 (5%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + + R++ PL + S + ++++ VLRM G NI LF+G + ++ +I Sbjct: 1 MTMRVPRIYHPNPLESGAIIQLSDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEAN 60 Query: 63 KS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-- 118 K ++ ++ ++ D+ + ++++ IQKSVE+G+ I P+++ Sbjct: 61 KKSVKIQLGLATIANRESPLDLHLGQVISRGEKMEFTIQKSVELGVNIITPLLSERCNVK 120 Query: 119 ----NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + ++ ISA EQC +P I P +E D +I + S Sbjct: 121 LDPRRLSKKQQQWQSIAISACEQCGRNKIPLIRPVMPIEAWCMEKDDALKINLHPKAQSS 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L +A + + +LIGPEGG +E + F T + LGPRILR++T A+ A+ Sbjct: 181 INTL-----LASVNKIRLLIGPEGGLSPDEIIMTTNYQF-TNILLGPRILRTETTALTAI 234 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 235 TALQVRFGD 243 >gi|192289752|ref|YP_001990357.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris TIE-1] gi|192283501|gb|ACE99881.1| protein of unknown function DUF558 [Rhodopseudomonas palustris TIE-1] Length = 251 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 146/246 (59%), Gaps = 3/246 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RLFVD L Q DQ +YL +VLR+ G +L FNG+DGEW + I+ Sbjct: 3 RYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGR 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + +V Q+R Q + DV Y+F+P+K RLDYM QK+VEMG G ++PV+T++TQ Sbjct: 63 KRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSL-- 178 N DR+R I AAEQC IL+L + P L+ L + + +VF DE + + Sbjct: 123 LNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASRANGERLLVFCDEDAEIADPVAA 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + A V +L+GPEGG+ +EE+ L P + L+LGPRI+R+DTAAVAA+ LVQ Sbjct: 183 LQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTLVQ 242 Query: 239 AICGDW 244 A+ GDW Sbjct: 243 AVLGDW 248 >gi|295687718|ref|YP_003591411.1| hypothetical protein Cseg_0273 [Caulobacter segnis ATCC 21756] gi|295429621|gb|ADG08793.1| protein of unknown function DUF558 [Caulobacter segnis ATCC 21756] Length = 238 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 133/239 (55%), Gaps = 3/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + RLFV L + DQ YL V+R+ GD +LLFNG+DGEW + I K Sbjct: 1 MIRLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGDEVLLFNGRDGEWRASIVEATKRGC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 K + Q+R D+ I + +K R++ +++K+ E+G +R ITR T + Sbjct: 61 LLKADVQTRPMDTGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLG 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ + AAEQ L +P I P L+ +L WD ++VF DE + ++E L Sbjct: 121 RLDAIAMEAAEQTGRLDVPEIVDPEKLDKILDGWDPTRRLVFCDEGGDARPAIEALAGTG 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE+E L L FVTP+SLGPRILR+DTAA++AM L QA GDW Sbjct: 181 AP--AAILIGPEGGFAPEERERLRGLSFVTPVSLGPRILRADTAAISAMTLWQASAGDW 237 >gi|260582598|ref|ZP_05850388.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae NT127] gi|260094409|gb|EEW78307.1| ribosomal RNA small subunit methyltransferase E [Haemophilus influenzae NT127] Length = 245 Score = 261 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L +TQ S D +++A VLRM EG+ + LF+ + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDDSNHIYPAKIIESNKK- 60 Query: 66 RFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 KVE R + + + R+++ IQKSVE+G+ I P+ + Sbjct: 61 SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + I+A EQC ++P I P L+ D ++ S Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIK 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V +LIG EGG ++E F T + LG R+LR++TA++AA+ Sbjct: 181 TLPSIPS----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQICFGD 242 >gi|163850332|ref|YP_001638375.1| hypothetical protein Mext_0899 [Methylobacterium extorquens PA1] gi|163661937|gb|ABY29304.1| protein of unknown function DUF558 [Methylobacterium extorquens PA1] Length = 250 Score = 260 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 108/239 (45%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RLFV+ L Q +YL VLR EG+ +LLFNG+DGEW ++I G KS Sbjct: 9 PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V Q+R Q +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ +DR Sbjct: 69 LRVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++ I AAEQC IL++P I P L L + N +VF DE + + L A+ Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVVALRGAAN 188 Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 P +A+L+GPEGG+H+EE+ + + P LSLGPRILR+DTAAVA +ALVQA+ G Sbjct: 189 PASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLG 247 >gi|317493538|ref|ZP_07951959.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918481|gb|EFV39819.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 243 Score = 260 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L + S + +++ VLRM EG I LF+G + +++ I K Sbjct: 2 RIPRIYHPERLEAPCEIDLSEEAANHVGRVLRMSEGHEIQLFDGSNQVFVAHIVAASKKN 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R KV+ + + + ++++ IQKS+E+G I P+I+ Sbjct: 62 VRVKVQSGVLEDRESPLHLHLGQVISRGEKMEFTIQKSIELGASIITPLISERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P LE D + ++ S N+ Sbjct: 122 ERMAKKLGQWQKIAIAACEQCGRNVIPEIRPTMLLEQWCAEQDDSLKLNLHPRANASINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ + Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTAGYQF-TDILLGPRVLRTETTALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|331007217|ref|ZP_08330426.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC1989] gi|330418984|gb|EGG93441.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC1989] Length = 257 Score = 260 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 19/257 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-----NGKDGEWLSKISY 60 H+ R+++ PL TQ + H+L V+RMK G ++LF +G+ GE+ + ++ Sbjct: 2 HIPRIYIPLPLSEHTQIELDKASMHHLVTVMRMKVGRQVILFNNVPIDGRYGEFTATLAS 61 Query: 61 VGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 V K R + E+ S V IK +R+D+++QK+ E+G+ I P+ ++YT Sbjct: 62 VDKKQARVDIGEFVSPQIESPLQVHLGACLIKNDRMDWLLQKATELGVSEITPLFSQYTD 121 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADET 171 + M R I+A EQ + LP ++ P LE + + H + V Sbjct: 122 VKLPAERIEKKMGHWRKIVINACEQSGRVRLPVLHTPLALEKWVASSTHVRQKFVLHPYA 181 Query: 172 CGSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 S ++ + + + +A+L+GPEGG +E + F + LGPRILR++ Sbjct: 182 SSSPHTSADRPQESSLSSDINAIALLVGPEGGLTEDEVDLAVQSQF-KGMRLGPRILRAE 240 Query: 228 TAAVAAMALVQAICGDW 244 TA + A+A++ GD+ Sbjct: 241 TAPLVALAVLSQQLGDF 257 >gi|297184217|gb|ADI20335.1| uncharacterized protein conserved in bacteria [uncultured alpha proteobacterium EB080_L27A02] Length = 243 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I S + RLFVD PL + DQ +YL +V+R+ GD I +FNGKDGEW +++ Sbjct: 1 MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K V+ QS Q DV +F+PIK R D++++K+ EMG+ I PV T YT + Sbjct: 60 ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKARTDFIVEKATEMGVSRICPVFTDYTNS 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R++ ++I AAEQC +P + +TL +LK+W ++F DE EN Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGENVKS 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 AILIGPEGG+ E L SL FVT +SLGPRILR Sbjct: 180 --MKATKSDKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILR 223 >gi|90426187|ref|YP_534557.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris BisB18] gi|90108201|gb|ABD90238.1| protein of unknown function DUF558 [Rhodopseudomonas palustris BisB18] Length = 251 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 102/245 (41%), Positives = 146/245 (59%), Gaps = 2/245 (0%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 +I RL+VD L Q + +Q +YL +VLR+ G +L+FNG+DGEW + I Sbjct: 3 QIEFRSPRLYVDADLSAGLQVPLTREQGNYLGNVLRLSAGAAVLVFNGRDGEWQAMIGAG 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + R + ++R+Q DV Y+F+P+K RLDYM+QK++EMG A++PV+TR+TQ T Sbjct: 63 KRVDRLDILSRARAQDGLPDVTYVFAPLKHARLDYMVQKAIEMGACALQPVLTRFTQVTR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 N +R+R I AAEQC IL++ + P LE L D +VF DE + + L Sbjct: 123 VNTERMRANVIEAAEQCGILSIAAVEEPLKLERYLSTRDTGRLLVFCDEAAEVADPVAAL 182 Query: 182 HAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + I +IGPEGG+ EE+ L P + L+LGPRI+R+DTAAVAA+ LVQ Sbjct: 183 GGARERASAGIDVVIGPEGGFAEEERALLLRQPNILRLALGPRIMRADTAAVAALTLVQT 242 Query: 240 ICGDW 244 + GDW Sbjct: 243 VLGDW 247 >gi|255318401|ref|ZP_05359634.1| RNA methyltransferase [Acinetobacter radioresistens SK82] gi|262378631|ref|ZP_06071788.1| RNA methyltransferase [Acinetobacter radioresistens SH164] gi|255304393|gb|EET83577.1| RNA methyltransferase [Acinetobacter radioresistens SK82] gi|262299916|gb|EEY87828.1| RNA methyltransferase [Acinetobacter radioresistens SH164] Length = 239 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + T + + +H+ VLR + GD+ LFNG+ GE+ + ++ + K Sbjct: 1 MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60 Query: 67 FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 S +T K +R+DY+IQK+ E+G+ I+ + + + Sbjct: 61 SVAIRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +D + I+A EQC + +P I PP L L+ ++V A +N L Sbjct: 121 RDQKKLDHWQAVVIAACEQCGMNRIPEILPPVPLTDWLQQNLPATRLVLAP-NKRQQNVL 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++A+LIGPEGG E + + F +G RILR++TA V A++++ Sbjct: 180 TDAQT-----DLALLIGPEGGLSEAEIDMANHAGF-KNWCIGERILRTETAPVVALSILN 233 Query: 239 AIC 241 Sbjct: 234 HHF 236 >gi|114771337|ref|ZP_01448757.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255] gi|114548262|gb|EAU51149.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255] Length = 243 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M I S + RLFVD PL + DQ +YL +V+R+ GD I +FNGKDGEW +++ Sbjct: 1 MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K V+ QS Q DV +F+PIK R D++++K+ EMG+ I PV T YT + Sbjct: 60 ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKTRTDFIVEKATEMGVSRICPVFTDYTNS 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R++ ++I AAEQC +P + +TL +LK+W ++F DE EN Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGENVKS 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 AILIGPEGG+ E L SL FVT +SLGPRILR Sbjct: 180 --MKATKSDKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILR 223 >gi|50122843|ref|YP_052010.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium atrosepticum SCRI1043] gi|49613369|emb|CAG76820.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + + S D +++ VLRM G ++ LF+G + + ++I GK Sbjct: 2 RVPRIFHPETLPLNGGEAELSDDAANHIGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKK 61 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVSFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + ++A EQ +P + P TLE D+ ++ S N Sbjct: 122 ADRMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L I V +LIGPEGG + E F T + LGPR+LR++T A+ AM Sbjct: 182 TLPL-----PIDRVRLLIGPEGGLTATEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|152981289|ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp. Marseille] gi|151281366|gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 241 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + PL I H++ V+R+ GD+I LFNG+ GE+ + I+ + K Sbjct: 1 MPRFYCPQPLAIGAVITLPDHVAHHI-QVVRLGSGDHITLFNGEGGEYTATITTIEKKRV 59 Query: 67 FKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R V + + +++D++I+K+VE+G+ AI+P+ ++ + Sbjct: 60 TAEIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQRCVVRLSAE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 M + ++A+EQ L + P ++ D + +I+ + E SL Sbjct: 120 RAAKKMQHWQGVIVAASEQSGRNRLAALAEPVDFNQWVQQKDLHKRILLSPRA---EQSL 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +VA++IGPEGG+ +E++ + LS+GPR+LR++TA ++A+A + Sbjct: 177 SDWARHHPPQSVALMIGPEGGFTDKEEDLALAQG-ALMLSMGPRVLRTETAGLSALAALN 235 Query: 239 AICG 242 A+ G Sbjct: 236 AVWG 239 >gi|332991913|gb|AEF01968.1| hypothetical protein ambt_02070 [Alteromonas sp. SN2] Length = 242 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ ++ + + + + H++A VLR+K I+LFNG E+ ++I + Sbjct: 2 RIPRIYYPNPIPLEEEFQLTEEAGHHIASVLRLKANHPIVLFNGDGNEYSAQIINAQRKK 61 Query: 66 RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 F + S+ ++ K +R+D ++QKSVE+G+ I P+++ Sbjct: 62 VFVEADACLTLSKESSLNIHLGQGVSKGDRMDTVLQKSVELGVTEITPILSERCTVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I A EQ TLP + PP L L + ++V A G+E Sbjct: 122 ARWEKKLLQWQKIIIGACEQSGRNTLPSLNPPIALNKWLSESTSSSRLVLAP---GAEKP 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +LIGPEGG E + F T SLGPRILR++TAA+++++++ Sbjct: 179 LA--RQPYNSQGFRLLIGPEGGLSEGEIHQANESGF-TSCSLGPRILRTETAAISSISIL 235 Query: 238 QAICGDW 244 QA GD+ Sbjct: 236 QAQHGDF 242 >gi|15613913|ref|NP_242216.1| hypothetical protein BH1350 [Bacillus halodurans C-125] gi|10173966|dbj|BAB05069.1| BH1350 [Bacillus halodurans C-125] Length = 250 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV T +GD ++ V+RM GD ++ +G +I S Sbjct: 1 MQRYFVPKEQMTDTYVTITGDDVKHIIKVMRMTIGDELICSDGHGRTVRCEIEKANDSEV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 +E + V + K ++LDY++QK E+G A P ++ + Sbjct: 61 LARVIEPLIPNTELPIRVTIAQALPKGDKLDYIVQKGTELGAQAFWPFSASRSIVKWDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R+ AAEQ +P I P LL+ + + A E E L Sbjct: 121 KGRKKTERLMKIAKEAAEQSYRERIPSIETPLAFSKLLQEISGFTKTIVAYEEEAKEGRL 180 Query: 179 ----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L+ + H ++ ++IGPEGG+ +EE + + P LGPRILR++TA++ A+ Sbjct: 181 MTFAACLNELHHGDSLLVIIGPEGGFTTEEIDAIQRAGGA-PAGLGPRILRTETASLYAL 239 Query: 235 ALVQAIC 241 A + Sbjct: 240 AAISYHF 246 >gi|312883853|ref|ZP_07743570.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus ATCC BAA-2122] gi|309368311|gb|EFP95846.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus ATCC BAA-2122] Length = 243 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R++ + S + ++ VLRMK G + LF+G E+++ IS K Sbjct: 2 RTPRIYHPEMITQLGLLTLSEEAAGHVGRVLRMKIGQELRLFDGSGSEFIATISSQSKKN 61 Query: 66 RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q RS + + +++++ IQKSVE+G+ I P+I+ Sbjct: 62 VEVEVKQSIERSAESNLKLHLGQVISRGDKMEFTIQKSVELGVEVITPLISERCGVKLDQ 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC +P I P +LE ++ S N+ Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNRIPSIRPIMSLENWCGEEYDGLKLNLHPRADYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + V +LIGPEGG E + F + + LGPR+LR++TAA+ A+ + Sbjct: 182 LPT-----PVEQVKLLIGPEGGLSEAEIDMTQKYAF-SDILLGPRVLRTETAALTAITAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QVRFGD 241 >gi|166031241|ref|ZP_02234070.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC 27755] gi|166029088|gb|EDR47845.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC 27755] Length = 248 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 117/244 (47%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 ++ FVD + + G +++ +VLRM+ G+ + + +G+ E+L ++ + + + Sbjct: 1 MQHFFVDASQVSEETIRIEGTDVNHMKNVLRMRIGEEVTVSDGQGKEYLCQVRDFEEEQV 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + K+ S S + K +++ ++QK VE+G+ A+ PV + + Sbjct: 61 QLKIVETKASDAELPSKIYLFQGLPKQEKMELIVQKCVELGIYAVVPVSMKRCVVKLDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 ++R T SAA+Q +P + T + L+ D + +V + G E++ Sbjct: 121 KGAKKVERWNTIAASAAKQSGRGIVPEVTSVKTYKEALEMAKDLDVVLVPYECAEGMEHT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + +I +V I IGPEGG+ +E + ++LG RILR++TA +A ++++ Sbjct: 181 KELIQSIKPGQSVGIFIGPEGGFDPDEIALACEMGG-QVITLGKRILRTETAGLALLSVL 239 Query: 238 QAIC 241 Sbjct: 240 MFQL 243 >gi|307543622|ref|YP_003896101.1| hypothetical protein HELO_1033 [Halomonas elongata DSM 2581] gi|307215646|emb|CBV40916.1| K09761 hypothetical protein [Halomonas elongata DSM 2581] Length = 248 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 18/254 (7%) Query: 1 MKIHSHL---KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57 M + R+ V L ++A VLR+ G +++F+G+ E + Sbjct: 1 MSAKHSMGKAPRIHVAAELQAGGDVVLPDGAARHVARVLRLGPGAPVIIFDGQGNEAEAI 60 Query: 58 ISYVGKSIRFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 ++ G+ + + V + K +R+DY IQK+VE+G+ I P+ T Sbjct: 61 LTEAGRKQVVARVERVAAGRGESPLAVHLGQAISKGDRMDYAIQKAVELGVAEITPLYTE 120 Query: 116 Y------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169 + + + + SA EQC TLP +YPP ++ L D +V Sbjct: 121 HGDVRLKGEREAKKLAHWQAVAASACEQCGRATLPPVYPPRSVVDWLAERDEPLCLVLHP 180 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 T G L A+LIGPEGG E + F + L+LGPRILR++TA Sbjct: 181 GTPGG------LDRHDDPVRAALLIGPEGGLSHAEVDAAADAGFAS-LTLGPRILRTETA 233 Query: 230 AVAAMALVQAICGD 243 V A++L+Q GD Sbjct: 234 PVVALSLLQNRFGD 247 >gi|227326188|ref|ZP_03830212.1| hypothetical protein PcarcW_02253 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 244 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + + + S D +++ VLRM G ++ LF+G + + ++I GK Sbjct: 2 RVPRIFHPETLSLNGGEAELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +R + + + + + ++++ IQKS+E+G+ I P+++ Sbjct: 62 SVRVRFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + + + ++A EQ +P + P TLE D ++ S N Sbjct: 122 AERMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDDALKLNLHPRATQSIN 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + V +LIGPEGG + E F T + LGPR+LR++T A+ AM Sbjct: 182 TLPL-----PVARVRLLIGPEGGLTAGEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQVRFGD 242 >gi|212638681|ref|YP_002315201.1| hypothetical protein Aflv_0838 [Anoxybacillus flavithermus WK1] gi|212560161|gb|ACJ33216.1| Uncharacterized protein conserved in bacteria [Anoxybacillus flavithermus WK1] Length = 252 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L+R FV + SGD H++ V+RM EGD +L N + L +I + + Sbjct: 4 LQRYFVRNEQIVGDHVMISGDDVHHIGRVMRMNEGDRLLCCNERSETMLCEIEQISNDFV 63 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ + + V +K ++ + ++QK E+G P+IT + + Sbjct: 64 RCRIIQWIEANVELPVHVYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIVKWDEK 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 ++R + AAEQ +P +Y P T+ L+ A E E Sbjct: 124 KGDKKVERWQKIVKEAAEQSHRAYMPSVYAPMTIRELIAWAHDIHYKCIAYEEEAKEGHH 183 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + ++ I+ GPEGG +E L FV SLGPRILR++TA + A+ Sbjct: 184 RSFAHLLQTMNKEDSLLIVFGPEGGLSEQEVALLKEHGFV-ACSLGPRILRAETAPLYAL 242 Query: 235 ALVQAIC 241 + V Sbjct: 243 SAVSYEW 249 >gi|293607138|ref|ZP_06689480.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC 43553] gi|292814472|gb|EFF73611.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC 43553] Length = 243 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 10/241 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D PL + H+ VLR+K G++++LFNG+ GE+ + + GK+ Sbjct: 4 PRFFCDIPLSAGARIALPDALAHHALRVLRLKAGESVVLFNGQGGEYPAVLDVDGKAGYA 63 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 ++ ++ +R + + +++D++++K+VE+G + P+ + + Sbjct: 64 QLGDFSAREAELAGRITLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGPRL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + SAAEQC L + P +L L +++ E E+ K Sbjct: 124 DKRVAHWQRIAQSAAEQCGRNRLMAVDAPRSLADWLAEPAEGLRLLCHPEA--GEDLAGK 181 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A + + +L+GPEGG+ +E E V + GPR+LR++TA +A ++ V A+ Sbjct: 182 LRAAPGLTALTLLVGPEGGWSDKELELARQAG-VQAVRFGPRVLRTETAGLALVSAVSAL 240 Query: 241 C 241 Sbjct: 241 L 241 >gi|307308472|ref|ZP_07588176.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C] gi|307319035|ref|ZP_07598466.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83] gi|306895449|gb|EFN26204.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83] gi|306901075|gb|EFN31683.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C] Length = 245 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 148/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLF++ PL + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ Sbjct: 1 MRANFRMQRLFIENPLHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60 Query: 61 VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + V Q+R Q D+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++RVR I AAEQC +L +P + P LE LL +W + +IVF DE S+N L Sbjct: 121 KIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L IA +A+LIGPEGG+ E++ L S FVT + LGPRILR Sbjct: 181 ILEGIAE-RRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225 >gi|170751754|ref|YP_001758014.1| hypothetical protein Mrad2831_5384 [Methylobacterium radiotolerans JCM 2831] gi|170658276|gb|ACB27331.1| protein of unknown function DUF558 [Methylobacterium radiotolerans JCM 2831] Length = 250 Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 139/240 (57%), Gaps = 4/240 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL V L Q +YL +VLR D +L+FNG+ GEW + + G+ Sbjct: 9 PRLHVAADLAAGVILPLDRAQANYLLNVLRRGPDDPVLVFNGRHGEWRAHLVQTGRKGAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V Q+R QT+++D+ Y+F+P+K+ RLDY+ QK+VEMG G IRPVITR+TQ N+DR Sbjct: 69 LHVAAQTRPQTERADLHYLFAPLKSARLDYLAQKAVEMGAGTIRPVITRFTQGDRVNIDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R + AAEQC IL +P P L L +VF DE + + L A Sbjct: 129 LRANAVEAAEQCGILAIPECPEPERLPAALAGLAPGRLLVFCDEDAPVRDPVAALRAAGD 188 Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P +A+L+GPEGG+ EE+ + + P LSLGPRILR+DTAAVA + LVQA+ GD Sbjct: 189 PLAPPPLAVLVGPEGGFSEEERALILARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248 >gi|95928478|ref|ZP_01311225.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] gi|95135268|gb|EAT16920.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] Length = 261 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 11/247 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 S ++R F + D H+++ VLR++ D I+L +G+ G +I + Sbjct: 7 RSLMRRFFTPQITFTHSSADLPRDVAHHISTVLRLRTDDRIVLCDGRGGCAECRIDEISP 66 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 K R Q V I +++LD ++QK+ E+G+ +RPV + Q Sbjct: 67 KRCRVTRLRHWLEQETALPVTLIQGLPHSDKLDLILQKTTELGVQQVRPVRCQRCQYPIA 126 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AA Q + LP + + E L++ D + ++V ++ + Sbjct: 127 PAKAARKLERWQKIVTEAARQSERSWLPEVAALCSFEEALQHCDADVKLVLWEQA---DQ 183 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+++ VA+++GPEGG EE FV + LGPRILR++TA +A MA+ Sbjct: 184 PLQRVLPEISPDRVAVVVGPEGGLAQEEVALAVEHGFV-AVGLGPRILRTETAGMALMAI 242 Query: 237 VQAICGD 243 +Q GD Sbjct: 243 LQYQYGD 249 >gi|152976741|ref|YP_001376258.1| hypothetical protein Bcer98_3037 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025493|gb|ABS23263.1| protein of unknown function DUF558 [Bacillus cytotoxicus NVH 391-98] Length = 249 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ T + GD H++A V+RM GD+I I+ + Sbjct: 1 MQRYFVEEKNVNGTTIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAACTIAEITNEFV 59 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ + V K ++L+ + QK E+G A P + + Sbjct: 60 DSTIVEWIETTSELPILVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 T ++R++ AAEQ +P +Y P + + LL+ + A E + Sbjct: 120 KTDKKVERLKKIVKEAAEQSHRTEIPHVYAPVSFKQLLEMSKEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L I + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 ANFAKALTTIEPGQKLLIVFGPEGGLSEEEVSALREYKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|254473523|ref|ZP_05086919.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062] gi|211957235|gb|EEA92439.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062] Length = 242 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 104/223 (46%), Positives = 143/223 (64%), Gaps = 5/223 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RLFVD L +A Q +YL +VLRMKEG +L+FNGK GEW ++I G KS Sbjct: 1 MQRLFVDQELRAGLHLEADRAQANYLLNVLRMKEGGEVLVFNGKHGEWRAQILPTGRKSC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 V Q R QT D+ Y+F+P+K RLDYM+QK+VEMG G +RPVIT++TQN ++ Sbjct: 61 ELIVTEQLREQTPTPDLDYLFAPLKLARLDYMVQKAVEMGAGRLRPVITQFTQNPKIKLE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLH 182 R+ + + A EQC +L++P + P ++ LL W+ + QI+F DE G+ N LE L Sbjct: 121 RMESNALEACEQCGVLSVPSVLEPVQIKKLLSTWEQEEGDRQIIFCDEGHGTHNPLEALK 180 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + P +A+LIGPEGG+ EE+ LHS PFV + LGPRILR Sbjct: 181 DVPKAP-LAVLIGPEGGFSEEERALLHSKPFVHAIPLGPRILR 222 >gi|254508609|ref|ZP_05120725.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] gi|219548460|gb|EED25469.1| conserved hypothetical protein [Vibrio parahaemolyticus 16] Length = 225 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 14/228 (6%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSD 81 S D ++ VLRMKEG ++LLF+G E+ + IS V K E RS D Sbjct: 2 LSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPATISSVTKKHVEVDVTERIERSAESPLD 61 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 + + +++++ IQKSVE+G+ I P+I+ + + + + ISA Sbjct: 62 LHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQKRFEKKLAQWQKIAISAC 121 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC T+P I P LE ++ S N+L + V +LIG Sbjct: 122 EQCGRNTVPEIRPIMQLEEWCAEDYDGLKLNLHPRAKYSINTLPT-----PVEKVRLLIG 176 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 PEGG +EE F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 177 PEGGLSAEEIGMTEEYKFEETL-LGPRVLRTETAALTAITALQVRFGD 223 >gi|159139721|gb|AAK86465.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 239 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 148/220 (67%), Gaps = 2/220 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RLF++ L +A+G+Q++YLA+VLRM +G ILLFNG+DGEW +K+S+ K I Sbjct: 1 MQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 Q+R Q +++ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q +N + Sbjct: 61 SLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNSE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 ++R I AAEQC IL+LP + P L+ +L+ W + +I++ DE +N L L A+ Sbjct: 121 KLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVK 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +A+L+GPEGG+ EE+ L SL FVTP+ LGPRILR Sbjct: 181 E-RKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILR 219 >gi|306845979|ref|ZP_07478546.1| conserved hypothetical protein [Brucella sp. BO1] gi|306273614|gb|EFM55459.1| conserved hypothetical protein [Brucella sp. BO1] Length = 242 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 107/249 (42%), Positives = 147/249 (59%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELQAGVSFDAEAQAAHYLAHVLRMKEGDKVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ D Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|160880435|ref|YP_001559403.1| hypothetical protein Cphy_2303 [Clostridium phytofermentans ISDg] gi|160429101|gb|ABX42664.1| protein of unknown function DUF558 [Clostridium phytofermentans ISDg] Length = 246 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 117/245 (47%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++R +++ T + G +++ +VLRMK G+ ++ +G+ ++ I+ K +I Sbjct: 1 MQRFYIESTNISDTTIRIEGADVNHIKNVLRMKIGEKLIACDGQGIDYCCIIAEFEKDNI 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 + + ++ T+ + + K ++++ ++QK+VE+G I PV+ + T Sbjct: 61 ILSISERKKTDTELPAKLILFQGLPKKDKMELIVQKAVELGAYEIVPVMMKRTIVKLEDK 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + ++R + AA+Q +P ++ + + +K + I+ + G Sbjct: 121 KKEQKKLERWQAIAEGAAKQSGRGFIPRVHEIVSYQEAIKMASECDLSILPYECASGINE 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++ ++ I+IGPEGG+ +E + + P++LG RILR++TA + ++ Sbjct: 181 TRALINQSKGKDSIGIMIGPEGGFAEDEVDLAKEHG-IIPVTLGKRILRTETAGLTILSY 239 Query: 237 VQAIC 241 + Sbjct: 240 LMLTL 244 >gi|118444754|ref|YP_878563.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium novyi NT] gi|118135210|gb|ABK62254.1| conserved hypothetical protein TIGR00046 [Clostridium novyi NT] Length = 251 Score = 258 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV + G+ ++ VLR+KEGD + + + E+L I Y+ KS Sbjct: 1 MHKFFVSENNILSDIAVIEGEDVKHIYKVLRLKEGDKVNINDCNGKEFLGTIDYIDKSKV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 +E + +V K +++D ++QK E+G+ I PV+T Sbjct: 61 EVKLLEELEINNEPPIEVYLYQGLPKASKMDLIVQKCTELGIREITPVVTGRVASSINDI 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR A +Q +P + ++ L + IV E + Sbjct: 121 KRESKKLDRWNRIAFEACKQNKRTLIPKVNDIMNMDELKEQLKEMDLIVVPYENAENYGI 180 Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + + + V I+IGPEGG+ EE E L ++ ++LGPRILR++TA +AL Sbjct: 181 KQMIKNVTGEVKKVGIIIGPEGGFEQEEIEELKNME-AQIVTLGPRILRTETAGFTCLAL 239 Query: 237 VQAICGD 243 + GD Sbjct: 240 LMYELGD 246 >gi|168215653|ref|ZP_02641278.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC 8239] gi|182382065|gb|EDT79544.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC 8239] Length = 250 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F + T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K + Sbjct: 1 MHKFFTPAHMFSDTHVKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ E + ++ K ++D ++QK VE+G+ I P IT + Sbjct: 61 SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ + A +Q +P + P + +L+ D +V E Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKEVLEKIDELDLMVIPYENATGYGIRAM 180 Query: 181 LHAIAH---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++I + I NV I++GPEGG+ E E L ++LGPRILR++TA ++L+ Sbjct: 181 VNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239 Query: 238 QAICGD 243 Q GD Sbjct: 240 QYELGD 245 >gi|90580291|ref|ZP_01236098.1| hypothetical protein VAS14_20206 [Vibrio angustum S14] gi|90438593|gb|EAS63777.1| hypothetical protein VAS14_20206 [Vibrio angustum S14] Length = 225 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 16/229 (6%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80 S D +++ V+RM+ G +L+F+G + E+ + I+ K +VE QSR + Sbjct: 2 LSDDAANHVGRVMRMQVGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVEHSIESPL 60 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 D+ + +++++ IQKSVE+G+ I P+I+ + +D+ + I+A Sbjct: 61 DIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLDQWQKIAIAA 120 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P LE ++ S N+L + NV +LI Sbjct: 121 CEQCGRNVVPTIRPVMKLEQWCAEEYDGLKLNLHPRANYSINTLPT-----PVTNVRLLI 175 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG ++E F + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 GPEGGLSADEISMTEQYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223 >gi|78044093|ref|YP_359279.1| hypothetical protein CHY_0418 [Carboxydothermus hydrogenoformans Z-2901] gi|77996208|gb|ABB15107.1| conserved hypothetical protein TIGR00046 [Carboxydothermus hydrogenoformans Z-2901] Length = 248 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + F+ +GD ++A VLR+K G+ + L + ++ +L ++ V K + Sbjct: 1 MPYFFLPPGQTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QN 119 + K+ + + T+ +V + K +++D+++QK+ E+G+ I PV T T + Sbjct: 61 QLKILEKKKVVTRPPVNVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVVFDER 120 Query: 120 THY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + AA+Q + +P I+P L+ L + +V + + SL Sbjct: 121 KKKDRCERWQKIAYEAAKQAGVSRVPEIFPVIDLKALPEFISDALILVPYE--GEEQTSL 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++L + NV ++IGPEGG+ E E L S VT +SLGPRILR++TAA+A +++V Sbjct: 179 KQLLNKEAVKNVTVIIGPEGGFDPGEIEYLKSFGAVT-VSLGPRILRTETAALAVLSMVL 237 Query: 239 AICGD 243 GD Sbjct: 238 YQWGD 242 >gi|229595716|ref|YP_001525220.2| 16S ribosomal RNA methyltransferase RsmE [Azorhizobium caulinodans ORS 571] Length = 250 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 2/241 (0%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +RLFV L T +Q HY+A+V+R+ +L+FNG+DGEW + +I K Sbjct: 6 FRAQRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKK 65 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 +R + Q+R Q + + Y F+P+K RLDYM+QK+VEMG G + PV+T++TQ N Sbjct: 66 EVRLSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVN 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R+ I AAEQC ILT+P + P L L + +VF DE + L L Sbjct: 126 GERMEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRP 185 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A P + +LIGPEGG+ ++E+ LH V ++LGPRILR+DTA VAA+ALVQA+CGD Sbjct: 186 AAGGP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGD 244 Query: 244 W 244 W Sbjct: 245 W 245 >gi|302389476|ref|YP_003825297.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM 16646] gi|302200104|gb|ADL07674.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM 16646] Length = 256 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63 + F+ + + SG+ H++A VLRM +GD + L NG D +I + + Sbjct: 1 MPIFFIHGKMNPGEVVEISGEDAHHIARVLRMGKGDLLSLSNGLDALGTGQILELFPEDR 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I+ KV +++ + ++ + S K + D ++QK+ E+G+ PVIT T Sbjct: 61 KIKVKVIEKNKFEPRRPRITLFQSVPKGQKFDLILQKNTELGVSEFVPVITERTVVEIEG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ +R R T AA+QC LP + P + + L+ + ++ E Sbjct: 121 ESKSKKAERWRKITKEAAKQCRRPDLPVVREPVSFDGCLELLKNYRIVLVPWEGEREVFL 180 Query: 178 LEKLHAIAH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + +P++A+LIGPEGG+ +E E VT +SLGPRILR++TA A+ Sbjct: 181 KSILSNVPPDVPDIAVLIGPEGGFSVQEIERARKSGAVT-VSLGPRILRTETAGFVVTAV 239 Query: 237 VQAICGD 243 + GD Sbjct: 240 LMYELGD 246 >gi|220936059|ref|YP_002514958.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7] gi|219997369|gb|ACL73971.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7] Length = 244 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 RL+++ L + + + ++ VLR++ G ++LFNG+ GE+ + ++ K Sbjct: 2 RTTRLYLNQSLSVGDTIELDERAHRHVVQVLRLRPGAELVLFNGQGGEYRATLTEAQKRH 61 Query: 66 --RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + R V + K +R+DY +QK+ E+G+ I+PV+T+ +Q Sbjct: 62 SSVSLTGFDPRDTRPALPVTLVQGISKGDRMDYSLQKATELGVSRIQPVLTQRSQAPGDP 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSEN 176 ++ R ISA EQC LP + + + L D +V + Sbjct: 122 RRLDNRLEHWRGVVISACEQCGRNELPELGGVISFQAWLGSEPDSGLGLVLDPRAETGLS 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + V++LIGPEGG E F TP+ LGPRILR++TA VAA+A+ Sbjct: 182 GL-----VPPEGEVSLLIGPEGGLDEAEILAARHRGF-TPVRLGPRILRTETAGVAALAV 235 Query: 237 VQAICGD 243 +Q + GD Sbjct: 236 IQGLWGD 242 >gi|260756485|ref|ZP_05868833.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260759917|ref|ZP_05872265.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260763155|ref|ZP_05875487.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882306|ref|ZP_05893920.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261216206|ref|ZP_05930487.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|62197593|gb|AAX75892.1| conserved hypothetical protein TIGR00046 [Brucella abortus bv. 1 str. 9-941] gi|82939654|emb|CAJ12643.1| Conserved hypothetical protein 46:Protein of unknown function DUF558 [Brucella melitensis biovar Abortus 2308] gi|189021229|gb|ACD73950.1| Conserved hypothetical protein 46 [Brucella abortus S19] gi|260670235|gb|EEX57175.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673576|gb|EEX60397.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676593|gb|EEX63414.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260871834|gb|EEX78903.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260917813|gb|EEX84674.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] Length = 242 Score = 257 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 104/249 (41%), Positives = 145/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVLRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH PFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|307824730|ref|ZP_07654953.1| protein of unknown function DUF558 [Methylobacter tundripaludum SV96] gi|307734088|gb|EFO04942.1| protein of unknown function DUF558 [Methylobacter tundripaludum SV96] Length = 253 Score = 257 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + RL+ PL + D HY+ VLR+K+ +I+LFNG GE+L ++ V + Sbjct: 2 RVSRLYTSAPLATGKLIELDDDNGHYVRTVLRLKKDAHIILFNGHGGEYLCTVAEVSRKA 61 Query: 66 RFKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 Q RS + + +R+D +QK+VE+G+ I P++T Sbjct: 62 VLIDVGQWSDRSVESPLQITLGLGISRGDRMDLTVQKAVELGVNHITPLLTERCVVQFKG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + AAEQ +LP + L+ L N ++ + + Sbjct: 122 EKKPQRLLHWQKIVQHAAEQSGRTSLPPLLEVEQLQNWLGNQ-QGLKVFLDPYAETTLSE 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ V +L GPEGG+ ++E++ + F+ P+ LG RILR++TA++AA+A V Sbjct: 181 LK-----PETMKVTLLTGPEGGFSNQERDAAKASGFI-PVRLGSRILRTETASLAALAAV 234 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 235 QMLWGDF 241 >gi|326202057|ref|ZP_08191927.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM 2782] gi|325987852|gb|EGD48678.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM 2782] Length = 250 Score = 257 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R FV+ + G+ + +L VLR + D + G ++ ++I + S Sbjct: 1 MSRYFVEEAQIANGRINIVGEDFQHLKKVLRAQLKDEVTACCG-GFDYTAEIEEINDSSI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 I + V K+++++ +IQK VE+G+ I PVIT Sbjct: 60 ICIITDVNKNFTESPLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPVITDRCVSRINTD 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ + R + AA+QC+ T+P I P T + ++ + E + Sbjct: 120 KDAKNKLARWQKIAREAAKQCNRGTIPNILYPITFKEAVEKASQAELAIIPYEKESAVGL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + I + +I+IGPEGG+ +E + V +SLGPRILR++TA + A++L+ Sbjct: 180 KNIVPRYEGITSGSIIIGPEGGFEEKEVQMAEDRG-VKKISLGPRILRTETAGMVALSLL 238 Query: 238 QAICGD 243 GD Sbjct: 239 MYELGD 244 >gi|119945034|ref|YP_942714.1| hypothetical protein Ping_1288 [Psychromonas ingrahamii 37] gi|119863638|gb|ABM03115.1| hypothetical protein DUF558 [Psychromonas ingrahamii 37] Length = 242 Score = 257 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R + L + T+ S D ++ HVLR++ G I+LFNG GE + ++ K Sbjct: 2 RIPRFYDPQTLTVATEVNLSKDAIQHI-HVLRLRPGAQIILFNGLGGEVQATLTSAQKRS 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +S + + + +R++++IQK+VE+G+ I P+++ Sbjct: 61 CTALINSFNQTDNESPLHLHLGQVISRGDRMEFVIQKAVELGVNEITPLLSERCGVKLDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + + ++A EQ +P I+ L ++ + ++ S N+ Sbjct: 121 QRMAKKQQQWQKIALAACEQSGRNIIPVIHETEALTTWCESAEQATKLTLHPRAKYSINT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I + +LIGPEGG +E +L F L LGPRILR++TAA++A+ + Sbjct: 181 LP-----PEIKRIRLLIGPEGGLSDQEVTLTETLNFTETL-LGPRILRTETAALSAITAL 234 Query: 238 QAICGD 243 Q GD Sbjct: 235 QCRFGD 240 >gi|256015526|ref|YP_003105535.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915] gi|261217356|ref|ZP_05931637.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261220586|ref|ZP_05934867.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261318573|ref|ZP_05957770.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261320229|ref|ZP_05959426.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261323007|ref|ZP_05962204.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261750457|ref|ZP_05994166.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261756957|ref|ZP_06000666.1| conserved hypothetical protein [Brucella sp. F5/99] gi|265986373|ref|ZP_06098930.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265996067|ref|ZP_06108624.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|255998186|gb|ACU49873.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915] gi|260919170|gb|EEX85823.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260922445|gb|EEX89013.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292919|gb|EEX96415.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261297796|gb|EEY01293.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261298987|gb|EEY02484.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261736941|gb|EEY24937.1| conserved hypothetical protein [Brucella sp. F5/99] gi|261740210|gb|EEY28136.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|262550364|gb|EEZ06525.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264658570|gb|EEZ28831.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 242 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|110798700|ref|YP_696706.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens ATCC 13124] gi|110673347|gb|ABG82334.1| RNA methyltransferase, RsmE family [Clostridium perfringens ATCC 13124] Length = 250 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F + T +G+ ++ VLR+K G+ +++ N + E+L ++ V K + Sbjct: 1 MHKFFTPAHMFSDTHATITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ E + ++ K ++D ++QK VE+G+ I P IT + Sbjct: 61 SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 +DR+ + A +Q +P + P + +L+ D +V E G Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAM 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I NV I++GPEGG+ E E L ++LGPRILR++TA ++L+ Sbjct: 181 VNSIEDKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239 Query: 238 QAICGD 243 Q GD Sbjct: 240 QYELGD 245 >gi|261855041|ref|YP_003262324.1| hypothetical protein Hneap_0420 [Halothiobacillus neapolitanus c2] gi|261835510|gb|ACX95277.1| protein of unknown function DUF558 [Halothiobacillus neapolitanus c2] Length = 244 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 13/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+++D L ++ +YL +VLR+++G + +F+G++ E + +S + Sbjct: 2 RIPRIYLDAALAEGATLPLPAERLNYLKNVLRLRDGQALRVFDGQNHEADATLSLGKREG 61 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + S I + K ++D++IQK+VE+G+ PV T + + Sbjct: 62 SLAIGRVAAHSVESPLQTHLIQAMGKGEKMDWVIQKAVELGVTRFTPVSTERSVVELKGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R I A EQ LP + P +LE L D + V S Sbjct: 122 RADKRHARFIDIAIGACEQSGRNFLPRVDPILSLEEALTQTDAALKWVLHPNP----GSG 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L A+A +VA+LIGPEGG E E + F+ PL+LG R+LR++TA + A++++Q Sbjct: 178 AALPAVAP-DSVALLIGPEGGLSDHEVEAAIASGFM-PLTLGSRVLRTETAPIVALSVLQ 235 Query: 239 AICGDWY 245 GD++ Sbjct: 236 MQWGDFF 242 >gi|152998316|ref|YP_001343151.1| hypothetical protein Mmwyl1_4321 [Marinomonas sp. MWYL1] gi|150839240|gb|ABR73216.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1] Length = 248 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 18/251 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-----KDGEWLSKISY 60 + R+F+D L T + +L VLR+K I +FNG K G++ + + Sbjct: 2 RIPRIFIDSELNENTTIPLPDSAFQHLCKVLRLKSDHPIRVFNGQEFNGKSGQFNATLCD 61 Query: 61 VGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 V K ++++ + V + + R+DY IQKSVE G+ AI+P+ + + Sbjct: 62 VEKRSANIHVADFEALNNEPPIQVTIGQTLSRGERMDYAIQKSVEAGVFAIQPLFSERCE 121 Query: 119 ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + ISAAEQC +P +YPP L + N + ++ + Sbjct: 122 VKLQDGRAEKRQQHWQQIAISAAEQCGRGVVPIVYPPMGLSEWVANCNEMLKLTLHHHSA 181 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 EK VA+LIGPEGG +E + F ++LGPR+LR++TA + Sbjct: 182 KPIRQYEK----PANNQVALLIGPEGGLTEKEVQLSEKSGF-NAITLGPRVLRTETAPIV 236 Query: 233 AMALVQAICGD 243 A++++ A+ GD Sbjct: 237 ALSVINALWGD 247 >gi|225686530|ref|YP_002734502.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis ATCC 23457] gi|225642635|gb|ACO02548.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] Length = 242 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQALRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|15964524|ref|NP_384877.1| hypothetical protein SMc00826 [Sinorhizobium meliloti 1021] gi|15073701|emb|CAC45343.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 245 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 147/226 (65%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLF++ L + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ Sbjct: 1 MRANFRMQRLFIENALHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60 Query: 61 VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + V Q+R Q D+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++RVR I AAEQC +L +P + P LE LL +W + +IVF DE S+N L Sbjct: 121 KIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L IA +A+LIGPEGG+ E++ L S FVT + LGPRILR Sbjct: 181 ILEGIAE-RRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225 >gi|85711779|ref|ZP_01042835.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145] gi|85694394|gb|EAQ32336.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145] Length = 249 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R+F PL + + S D + + VLRM+EG + LF D + + ++ V K Sbjct: 2 RVPRIFHPEPLTVNSTVSLSDDAFQHTIKVLRMQEGQALELFCNDDFNYAAVLTSVAKKS 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q S V + +R+D+ +QKSVE+G+ AI P+ + Sbjct: 62 AQVEITGAQLNSTESPLFVHLGQVVSRGDRMDFALQKSVELGVNAITPLFSERCGVKLNG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQ +P + P ++ +K ++ Sbjct: 122 DRLEKKQQQWQKIVISACEQSGRSHVPIVLPAILVDDFVKTPFDGLRLTLDPYARV---P 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L ++ + ++IGPEGG+ E E F P+ LGPRILR++TAA+ A+A + Sbjct: 179 LNQIEGANLAQRIQLMIGPEGGFTDIEVEHARHHHF-KPIRLGPRILRTETAAMTALAAI 237 Query: 238 QAICGD 243 Q GD Sbjct: 238 QYEFGD 243 >gi|215919303|ref|NP_820935.2| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA 493] gi|206584188|gb|AAO91449.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493] Length = 260 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 21 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 80 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121 + ++ + +T+ S ++ ++ ++DY IQK+VE+G+ I P+IT T+ Sbjct: 81 VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 140 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + IS EQ +P + +L L +V +NSL Sbjct: 141 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 197 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +LIGPEGG +E + F L LGPRILR++TA V A++L+QA Sbjct: 198 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 254 Query: 242 GD 243 GD Sbjct: 255 GD 256 >gi|294853463|ref|ZP_06794135.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL 07-0026] gi|294819118|gb|EFG36118.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL 07-0026] Length = 242 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAVHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|307296237|ref|ZP_07576064.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum L-1] gi|306878039|gb|EFN09262.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum L-1] Length = 248 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 131/238 (55%), Gaps = 4/238 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL V+ L G+ HYL V+R+K D +LLF+G+ GEW +K + K + Sbjct: 13 PRLHVETLLGEGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAAKARDIRKRDLV 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V Q+++ D +PIK R+D + +K+ E+G+ ++PV+TR N DR Sbjct: 73 LEVVSQTKAPENVPDFWLCCAPIKKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNFDR 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + + + AAEQC LP + L+ L+++W + + FADET G E + L A H Sbjct: 133 LHAHLVEAAEQCGRTALPDLSEMVKLDALIRDWPDDRWLFFADET-GGEPLADTLKA--H 189 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A LIGPEGG+ E+E + + P+SLGPRILR++TAA+AA + I GDW Sbjct: 190 PGPAAFLIGPEGGFDPAEREAIRGVAKAVPVSLGPRILRAETAAIAATSAWMTINGDW 247 >gi|226311620|ref|YP_002771514.1| hypothetical protein BBR47_20330 [Brevibacillus brevis NBRC 100599] gi|226094568|dbj|BAH43010.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 252 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 9/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R FV+ + + GD H++ +V+R +EG+ I++ +G +K+ Y+ K + Sbjct: 1 MQRYFVEPHSFTENELTIVGDDVHHIVNVMRAREGEEIIVSDGAGRSARAKLVYLSAKEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R +V E + V K +L++++QK E+G + P + T + Sbjct: 61 RAEVMEMLQEERELPIRVTIGQGLPKGEKLEWILQKGTELGAYSFFPFSSERTIVKLDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ LP + P + +L+ A E GS Sbjct: 121 KEAKKLERWRKIVKEAAEQSHRAVLPELLSPVSFREILEAGQSYTHCAIAYEKEGSTTIH 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L + ++ +L+GPEGG+ EE S F+T +SLGPRILR++TA+ +A Sbjct: 181 QVLEEMTASDSLLVLVGPEGGFSPEEVAQAESKGFLT-VSLGPRILRTETASQYVLACAS 239 Query: 239 AIC 241 Sbjct: 240 YQF 242 >gi|40889966|pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein Hi0303, Pfam Duf558 gi|40889967|pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein Hi0303, Pfam Duf558 Length = 257 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLR EG+ + LF+G + + +KI K Sbjct: 4 RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKS 63 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R ++ IQKSVE+G+ I P+ + Sbjct: 64 VKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDA 123 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 124 ERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSIKT 183 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 184 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 238 Query: 238 QAICGD 243 Q GD Sbjct: 239 QICFGD 244 >gi|94496115|ref|ZP_01302693.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58] gi|94424294|gb|EAT09317.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58] Length = 248 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 8/240 (3%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL V+ L G+ HYL V+R+K D +LLF+G+ GEW ++ + K + Sbjct: 13 PRLHVETQLGDGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAARARDIRKRDLV 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + Q+R+ + D +PI+ R+D + +K+ E+G+ ++PV+TR N+DR Sbjct: 73 LECVAQTRAPEQVPDYWLCCAPIRKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNLDR 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAI 184 + + + AAEQC LP + L+ LL NWD + FADE+ G+ E +L Sbjct: 133 LHAHLVEAAEQCGRTALPDLGSLMKLDALLGNWDSRRHLFFADESGGAPLEQTLR----- 187 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AH A L+GPEGG+ +E++ + ++P +SLGPRILR++TAA+AA + AI GDW Sbjct: 188 AHPGPAAFLVGPEGGFDPQERDAIQAMPGAVAVSLGPRILRAETAAIAATSAWMAINGDW 247 >gi|153812691|ref|ZP_01965359.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174] gi|149831207|gb|EDM86296.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 116/246 (47%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R FV+ + Q G +++++VLRMK+G+ + + +G E+ I Sbjct: 1 MQRFFVEPHQIDEAAHQIHIIGTDVNHISNVLRMKQGEEVWISDGGQKEYRCAIEAFSAD 60 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 Q S + K ++++ +IQK+VE+G I PV T+ Sbjct: 61 EVLLHIIYAQEPDYELPSRIYLFQGLPKADKMELIIQKAVELGAYEIIPVETKRCVVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175 + ++R + SAA+Q + +P ++ + + LK + + +++ + G + Sbjct: 121 GKKAAKKVERWQQIAESAAKQSKRMLIPNVHQVLSFKEALKYAESMDIRLIPYELAKGMQ 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + E L AI ++ I IGPEGG+ +E E S P++LG RILR++TA +A ++ Sbjct: 181 ETKEILAAIEQGQSIGIFIGPEGGFEEKEVEAAISEG-AKPITLGKRILRTETAGLAILS 239 Query: 236 LVQAIC 241 ++ Sbjct: 240 VLMFQL 245 >gi|302877374|ref|YP_003845938.1| hypothetical protein Galf_0129 [Gallionella capsiferriformans ES-2] gi|302580163|gb|ADL54174.1| protein of unknown function DUF558 [Gallionella capsiferriformans ES-2] Length = 243 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65 + R + P+ + D H+ + VLR++EGD++ LF+G E+ I+ GK + Sbjct: 1 MPRFYCPPPIPAQGAFNLPADAAHHASRVLRLREGDSVQLFDGTGHEYHGAITDMTGKQV 60 Query: 66 RF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + + + + + ++D++IQK+ E+G I+P+ T + Sbjct: 61 VVGDIVHIEADRESPLQIVLAQALCSSEKMDWVIQKATELGATEIQPLATGRSVAKLSAD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176 + + ISA EQC LP I+PP + L++ + + + + S Sbjct: 121 RAAKRTEHWQQVAISACEQCGRNVLPVIHPPVEIGTWLQHMLDSDMSKYILLPQGAKSLQ 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 EK + +LIG EGG+ E + F TP+ LG R++R++TAAVA +A+ Sbjct: 181 EQEKPQS-----GAVLLIGAEGGFTEAESDNALRCGF-TPVRLGARVMRTETAAVAGLAV 234 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 235 LQTLWGDF 242 >gi|158330817|dbj|BAF88302.1| protein of unknown function [Azorhizobium caulinodans ORS 571] Length = 283 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 2/241 (0%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +RLFV L T +Q HY+A+V+R+ +L+FNG+DGEW + +I K Sbjct: 39 FRAQRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKK 98 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 +R + Q+R Q + + Y F+P+K RLDYM+QK+VEMG G + PV+T++TQ N Sbjct: 99 EVRLSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVN 158 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R+ I AAEQC ILT+P + P L L + +VF DE + L L Sbjct: 159 GERMEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRP 218 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A P + +LIGPEGG+ ++E+ LH V ++LGPRILR+DTA VAA+ALVQA+CGD Sbjct: 219 AAGGP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGD 277 Query: 244 W 244 W Sbjct: 278 W 278 >gi|325662164|ref|ZP_08150782.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471613|gb|EGC74833.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium 4_1_37FAA] Length = 246 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64 ++ FV + +G +++ +VLRMK G+ + + +G + ++L +I K Sbjct: 1 MQHFFVVPDQVRDGYIEITGSDVNHMKNVLRMKTGEQLEISDGNNKKYLCEIESLEADKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E Q S + K+++++ +IQK+VE+G + PV T+ + Sbjct: 61 TARILEEQEAENELPSKLYLFQGLPKSDKMELIIQKAVELGAWEVIPVATKRAVVKLDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 +R + SAA+Q +P I + L + ++ + G + + Sbjct: 121 KAAKKRERWSGISESAAKQAGRNVIPEIKQVMNFQEALSYAKSLDVLLIPYELAEGMQAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E++ AI +V I IGPEGG+ EE + P++LG RILR++TA + ++++ Sbjct: 181 KERIQAIQPGQSVGIFIGPEGGFEQEEVKLAMEAGAY-PITLGRRILRTETAGMTMLSVL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|237749444|ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380806|gb|EEO30897.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 242 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64 + RLF DFPL + T + ++ VLR+ EG+ I+LFNG+ GE+ ++I + K+ Sbjct: 1 MTRLFCDFPLVVGTNIDLPKETSRHI-QVLRLTEGNEIVLFNGEGGEYSARIISLDRTKT 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R D+ + + ++D++I+K+VE+G I+P+ + + Sbjct: 60 NVKILSRHDREVELPYDITLAQALPEAGKMDWIIEKAVELGAAGIQPLAAQRSVVRLNAD 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R +T +A+EQC TL I P + N +++F + + Sbjct: 120 RAEKRLARWQTIVTAASEQCGRNTLMEISEPVAFNTFIDNSGGCLRVMFTPRATETLSGW 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + A + I+IGPEGG+ EE+E V PLS+G RILR++TA +AA++ + Sbjct: 180 ARKQA---PQAITIMIGPEGGFSPEEEELAIQNG-VIPLSMGSRILRTETAGMAAISAIN 235 Query: 239 AIC 241 AI Sbjct: 236 AIW 238 >gi|291522746|emb|CBK81039.1| RNA methyltransferase, RsmE family [Coprococcus catus GD/7] Length = 246 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 117/244 (47%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV +G +++ +VLRM G+ + + +G+ ++ +I+ + K + Sbjct: 1 MPRFFVGAEQISDKDIVITGTDVNHIRNVLRMTPGEEVTVSDGQGMDYFCRIAELTKEEV 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R + S + + K ++++ +IQK+VE+G+ I PV T+ + Sbjct: 61 RLDIVDSWHSFVELPTKIYLFQGLPKADKMELIIQKAVELGVYEIVPVATKRAVVKLDPK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 R ++ SAA+Q +P I + E L+ + + ++ ++ G +++ Sbjct: 121 KEEKKRLRWQSIAESAAKQAGRALIPQIATCISFEKALRMCNGLDAALIPYEKAEGMQHA 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++ A+ ++ I IGPEGG+ E E + + P++LG RILR++TA + ++++ Sbjct: 181 RDQVRALHGKHSIGIFIGPEGGFEESEIEAARAAGAI-PITLGHRILRTETAGLTMLSIL 239 Query: 238 QAIC 241 Sbjct: 240 MFEL 243 >gi|296533751|ref|ZP_06896298.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265927|gb|EFH12005.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 242 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 143/239 (59%), Gaps = 4/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + RL V L + Q HYL V+R KEGD + LFNG+DGEWL++I+ + K + Sbjct: 3 IPRLHVAADLAEAAEIPGEPGQGHYLGQVMRRKEGDPVHLFNGRDGEWLARIAALRKDRV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +F+ E + R Q D++ + +P+K + +D++++K+ E+G+ +IRPV T N++ Sbjct: 63 QFRPESRLRPQQSGPDLRLLLAPVKRDAMDWIVEKATELGVRSIRPVFTARCVIGRVNLE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ T AAEQC+ L +P I P L L WD +V + G SL + A Sbjct: 123 RLSTIAREAAEQCERLDVPEIAAPLDLHAALDAWDGAPLLV--GDARGKAPSLNVVLAGK 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P + +L+GPEGG+ +E + + PFV+P +LGPRILR++TAAVA +A++QA+ GDW Sbjct: 181 APP-LGLLVGPEGGFTDQELDAVRRRPFVSPAALGPRILRAETAAVAGLAVLQALAGDW 238 >gi|296284223|ref|ZP_06862221.1| 16S ribosomal RNA methyltransferase RsmE [Citromicrobium bathyomarinum JL354] Length = 255 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 128/238 (53%), Gaps = 4/238 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV+ L G++ HYL V+R+ EGD ++L + GEW +++ V K + Sbjct: 13 PRLFVEDELGEGRTIALYGNRAHYLGKVMRVSEGDTVILCDDLTGEWAARVGQVDKRRVD 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V + R + D+ + +K +R D +++K+ E+G+ AIRPV+TR N +R Sbjct: 73 VTVVERLREREAVPDLWLCPALLKKDRFDLVLEKATELGVAAIRPVVTRRCVADKLNPER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 T AAEQC LP + P L+ LL +W + FADE G E++ H Sbjct: 133 AATIVTEAAEQCARTALPQVAGPVKLDALLADWPAERALFFADEE-GGEDAASAF--ARH 189 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AIL GPEGG+ E+ + +LP P++LGPRILR +TA +AA+++ A GDW Sbjct: 190 GAPAAILTGPEGGFDDAERAAIRALPQAIPITLGPRILRGETATIAAISIWMAQAGDW 247 >gi|168204735|ref|ZP_02630740.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str. JGS1987] gi|169343763|ref|ZP_02864762.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169298323|gb|EDS80413.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|170663617|gb|EDT16300.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str. JGS1987] Length = 250 Score = 255 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F + T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K + Sbjct: 1 MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ E + ++ K ++D ++QK VE+G+ I P IT + Sbjct: 61 SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 +DR+ + A +Q +P + P + +L+ D +V E G Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKGVLEKIDQLDLMVIPYENATGYGIRAM 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I NV I++GPEGG+ E E L ++LGPRILR++TA ++L+ Sbjct: 181 VNSIEDKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239 Query: 238 QAICGD 243 Q GD Sbjct: 240 QYELGD 245 >gi|304313284|ref|YP_003812882.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1] gi|301799017|emb|CBL47260.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1] Length = 248 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 14/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+F + PL T+ + H++ VLRMK GD +LLFNG GE+ +I GK Sbjct: 2 RIPRIFQEIPLLEGTKVTLTESGSHHVTQVLRMKPGDQVLLFNGTGGEYFGEIEATGKRG 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + + S + + K R DY IQK+VE+G+ I P+ +R + Sbjct: 62 VEVLLTYFNEVDRASPLSVHLGQVIGKGERFDYAIQKAVELGVTEITPLFSRRCEVKLNG 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ++A EQ + +P I+ P L + + + + E Sbjct: 122 PRLDKKLQQWKHLAVAACEQSGLNIIPQIHAPVALAEWAETVQADARWILHTEGEPHNPF 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ ++A +GPEGG+ E ++ F +S+GPRI R++TA V ++L+ Sbjct: 182 TQQ-----APQSLAFAVGPEGGFEDTEVSSVRERGF-DCVSMGPRIWRTETAPVVMLSLL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QYHWGD 241 >gi|163816746|ref|ZP_02208109.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759] gi|158448003|gb|EDP24998.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 11/242 (4%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R FVD I T + +G +++ +VLR+K G+ IL+ +G+ ++ +IS + Sbjct: 1 MNRFFVDIDGRDIGTDIEITGGDVNHIKNVLRLKIGEEILVSDGRGRDYTCRISRIDPDK 60 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +E S + V K++++D ++QK VE+G+ I PV T T Sbjct: 61 VVCNIEDISDNFAELPVKVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVFTSRTIVKLDQ 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + +R RT SAA+Q +P I P + L + I+ +E G E Sbjct: 121 KKATKKTERYRTIAESAAKQSGRGIVPEITEPVSFAKALDMASELDMNIIPYEEAEGIEE 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S + + + ++ I IGPEGG+ EE E + ++LG RILR++TA +A MA+ Sbjct: 181 SRQIIANVRGKRSLGIFIGPEGGFAREEVEEAVAAG-AECITLGHRILRTETAGLAVMAI 239 Query: 237 VQ 238 + Sbjct: 240 IM 241 >gi|238752316|ref|ZP_04613795.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei ATCC 43380] gi|238709477|gb|EEQ01716.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei ATCC 43380] Length = 232 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 14/235 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSR 74 T+ S D +++ VLRM EG ++ LF+G + + ++I K I E Q Sbjct: 2 QANTEIALSDDAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIKADKKNLIVRLAEGQIA 61 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 ++ + ++++ +QKS+E+G+ I P+ + + + + + Sbjct: 62 DCESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDGERLAKKIQQWQ 121 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I+A EQC T+P I L D + ++ S N+L A + Sbjct: 122 KIAIAACEQCGRNTIPEIRAAMQLTDWCAEQDDSLKLNLHPRASNSINTLP-----ASLN 176 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V +LIGPEGG ++E L F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 177 KVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITALQVRFGD 230 >gi|18311008|ref|NP_562942.1| hypothetical protein CPE2026 [Clostridium perfringens str. 13] gi|168208728|ref|ZP_02634353.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str. ATCC 3626] gi|168212937|ref|ZP_02638562.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE str. F4969] gi|18145690|dbj|BAB81732.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|170712974|gb|EDT25156.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str. ATCC 3626] gi|170715557|gb|EDT27739.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE str. F4969] Length = 250 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F + T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K + Sbjct: 1 MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ E + ++ K ++D ++QK VE+G+ I P IT + Sbjct: 61 SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ + A +Q +P + P + +L+ D +V E Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAM 180 Query: 181 LHAIAH---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++I + I NV I++GPEGG+ E E L ++LGPRILR++TA ++L+ Sbjct: 181 VNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239 Query: 238 QAICGD 243 Q GD Sbjct: 240 QYELGD 245 >gi|197303723|ref|ZP_03168760.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC 29176] gi|197297243|gb|EDY31806.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC 29176] Length = 249 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 ++ F D + + G +++ +VLRMKEG+ + + +G +L +I Y G Sbjct: 1 MQHFFADRSWVQGDKIRLEGSDVNHMKNVLRMKEGEEVQVSDGTGNAYLCQIEGYEGNQA 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ ++ T+ S + K ++++ ++QK+VE+G+ I P + + + Sbjct: 61 VLKIREKTEKDTELPSKIWLFQGLPKGDKMELIVQKAVELGVYGIVPFAAKRSVVRLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177 R + AAEQ +P + T L+ I+ E G + + Sbjct: 121 KAGKKQIRWQAIAKGAAEQSGRGLIPEVEIVKTYAEALEFAKELDVILVPYELEEGMKAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + AI +V I IGPEGG+ +E + V P++LG RILR++TA + ++++ Sbjct: 181 MSIIEAIRPGQSVGIFIGPEGGFEEQEIGQARNAGAV-PVTLGRRILRTETAGITTLSIL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|224369186|ref|YP_002603350.1| hypothetical protein HRM2_20880 [Desulfobacterium autotrophicum HRM2] gi|223691903|gb|ACN15186.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 250 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R ++ + +G + +L VLR+ GD + L +G+ ++I + + Sbjct: 1 MRRFYIKTDSICNGRAVITGQEARHLGTVLRLGPGDRVELVDGRGTIARAEIETLSHNTA 60 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 S S + +K ++D +++ E+G+ P + + + Sbjct: 61 VFTILDSSSPGAESPVHITLAQGMLKDKKMDMLVRHLTELGICQWIPFYSSRSIPKPDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177 + M+R A +QC LP I P + LLK + D++ +I F + ++ Sbjct: 121 RIYSRMERWNKIAREALKQCGRSMLPLIEDPIPFDQLLKTSTDYDGKIAFWENATAPIHT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ ++ + +LIGPEGG+ S E + F + SLGPRILR++TA++ A ALV Sbjct: 181 IQT-PSMEPAKKIIVLIGPEGGFSSFEIDAARENGF-SSCSLGPRILRAETASLTAAALV 238 Query: 238 QAICGD 243 Q + GD Sbjct: 239 QYLFGD 244 >gi|82701513|ref|YP_411079.1| hypothetical protein Nmul_A0379 [Nitrosospira multiformis ATCC 25196] gi|82409578|gb|ABB73687.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 255 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 17/254 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R + + + H+ A VLR++ GD ++LFNG GE+ I K Sbjct: 3 LPRFYCPIEILAGQTLELPSAVAHHAARVLRLEAGDEVVLFNGDGGEFTCVILRASKQGV 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK--TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V + ++S + + + ++D+++QK+VE+G+ I+P+IT+ + + Sbjct: 63 DVVVERHVQVERESPLTILLAQAVCMGEKMDWIVQKAVELGVTRIQPLITKQSVVRLGGE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSE 175 + ++ ISA EQC +P + P TL L ++ + + C Sbjct: 123 RGEKRVSHLQKVVISACEQCGRNHVPEVLPLATLRNWLGRQTEARRMSSDSLSPDACFML 182 Query: 176 NS-----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + L ++I ++ +L+GPEGG+ +E+ F+ PL LG RILR+++AA Sbjct: 183 SPFATKGLRDFKHSSNIGSIILLVGPEGGFTQDEEAAAMVAGFI-PLRLGHRILRTESAA 241 Query: 231 VAAMALVQAICGDW 244 +AA+ +QA+ GD+ Sbjct: 242 LAAVGAMQALWGDY 255 >gi|295109582|emb|CBL23535.1| RNA methyltransferase, RsmE family [Ruminococcus obeum A2-162] Length = 247 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R FV+ + Q G +++++VLRMK+G+ + + +G E+ I Sbjct: 1 MQRFFVEPHQIDEGAHQIHILGSDVNHISNVLRMKQGEELWISDGGKKEYRCTIEDFSSD 60 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 Q S + K ++++ +IQK+VE+G + PV T+ Sbjct: 61 EVLLHIIYAQEPDYELPSRIYLFQGLPKADKMELIIQKAVELGAYEVIPVETKRCVVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175 + ++R + SAA+Q + +P ++ T + LK + + +++ + G + Sbjct: 121 GKKAAKKVERWKQIAESAAKQSKRMLIPNVHEVLTFKEALKYAEAMDIRLIPYELAKGMQ 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + E L I +V I IGPEGG+ +E ET S P++LG RILR++TA +A ++ Sbjct: 181 ETKEILADIQPGQSVGIFIGPEGGFEEKEVETAISEG-AKPITLGKRILRTETAGLAILS 239 Query: 236 LVQAIC 241 ++ Sbjct: 240 VLMFQL 245 >gi|29726851|pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of Haemophilus Influenzae. Northeast Structural Genomics Consortium Target Ir73. gi|29726852|pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of Haemophilus Influenzae. Northeast Structural Genomics Consortium Target Ir73 Length = 246 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLR EG+ + LF+G + + +KI K Sbjct: 1 RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKS 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ ++ + + + + + R ++ IQKSVE+G+ I P+ + Sbjct: 61 VKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDA 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I P L+ D ++ S + Sbjct: 121 ERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSIKT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V +LIG EGG ++E F T + LG R+LR++TA++AA++ + Sbjct: 181 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 235 Query: 238 QAICGD 243 Q GD Sbjct: 236 QICFGD 241 >gi|254482677|ref|ZP_05095915.1| conserved hypothetical protein TIGR00046 [marine gamma proteobacterium HTCC2148] gi|214037036|gb|EEB77705.1| conserved hypothetical protein TIGR00046 [marine gamma proteobacterium HTCC2148] Length = 243 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L ++ +LA LRM+E ++LF+G+ GE+ + I+ VGK Sbjct: 2 RIPRIYAGQVLQAESSFDLEPGPSQHLARALRMQEAGQLILFDGRGGEYPATITSVGKKC 61 Query: 66 RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + + + S + R+D++IQK+ E+G+ + P++T T+ Sbjct: 62 VSVLTGQRHDIEVESPLAIHLGISISRGERMDWVIQKATELGVTHVSPLLTERTEVKLKA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ISA EQC LP I P T L L + ++V Sbjct: 122 DRAEKKRQHWQQIAISACEQCGRNRLPVINPLTLLPKWLNDSQAELKLVLHHRA------ 175 Query: 178 LEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L A + P ++ +LIGPEGG +E F L LG R+LR++TA +AA+++ Sbjct: 176 -ENLSAQSTPPRSIDLLIGPEGGLSPDEIHLAEQRAF-HALRLGDRVLRTETAPLAALSI 233 Query: 237 VQAICGD 243 +QA GD Sbjct: 234 LQARWGD 240 >gi|46914675|emb|CAG21452.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 225 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80 S D +++ V+RM+ G +LLF+G D E+ + IS K +V+ Q R++ Sbjct: 2 LSDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK-NVEVDIQCRNENSIESPL 60 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 ++ + ++++ IQKSVE+G+ I P+I+ + + + + ++A Sbjct: 61 NIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERCGVKLNAERFEKKLSQWQKIVVAA 120 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P LE ++ S N+L + + V +LI Sbjct: 121 CEQCGRNVIPEIRPVMKLEDWCAEEYDGLKLNLHPRANYSINTLPE-----PVTKVRLLI 175 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG +EE F + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 GPEGGLSAEEISMTEQYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223 >gi|182626905|ref|ZP_02954639.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str. JGS1721] gi|177907755|gb|EDT70367.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str. JGS1721] Length = 250 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F + T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K + Sbjct: 1 MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKAGEKVVVNNLESEEFLGEVEEVNKQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ E + ++ K ++D ++QK VE+G+ I P IT + Sbjct: 61 SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 +DR+ + A +Q +P + P + +L+ D +V E G Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAM 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I NV I++GPEGG+ E E L ++LGPRILR++TA ++L+ Sbjct: 181 VNSIEDKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIITLGPRILRTETAGFTCISLI 239 Query: 238 QAICGD 243 Q GD Sbjct: 240 QYELGD 245 >gi|88705487|ref|ZP_01103198.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88700577|gb|EAQ97685.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 245 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 19/247 (7%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F L + + ++A LRM+ GD++ LF+G E +IS + KS Sbjct: 4 PRFFTAQTLSEGSTLTLEKEPSRHIAKALRMRAGDSLCLFDGSGIEAHGEISDLDKSQVS 63 Query: 68 KVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + + T++S + I + + +R+D ++QK+ E+G+ I P+I+ T Sbjct: 64 VIVKSIQQPTRESPLDTVLIIALSRGDRMDTVVQKATELGVTEIWPMISERTGVRLDETR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSEN 176 ISA EQC LP + PT+ E L+ D + +++ T + Sbjct: 124 LARKRQHWERIAISACEQCGRNRLPTVETPTSFEETLQRAAKGDDSLRLILH--TSAHPS 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L H ++ +L+GPEGG+ EE F L +GPRILR++TA + +AL Sbjct: 182 PLPT-----HCKSLTLLVGPEGGFSDEEVTAALDQGFC-ALQMGPRILRTETAPLVGLAL 235 Query: 237 VQAICGD 243 QA GD Sbjct: 236 AQARWGD 242 >gi|163675614|gb|ABY39724.1| conserved hypothetical protein [Brucella suis ATCC 23445] Length = 242 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 LGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|160940893|ref|ZP_02088233.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC BAA-613] gi|158436137|gb|EDP13904.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC BAA-613] Length = 249 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 124/246 (50%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + FV+ + +G +++ +VLR+++G+ +L+ +G ++L + + G+ + Sbjct: 1 MHHFFVNPEQVEDGLIRITGSDVNHIKNVLRIRQGEEMLVSDGTGRDYLCQAEEIAGQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ E + + S + K+++++++IQK+VE+G I PV TR T + Sbjct: 61 TVRILETEEEGRELPSRIWLFQGLPKSDKMEFIIQKAVELGAAGIVPVSTRNTVVKLDPK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175 + R + SAA+Q +P + TL+ +++ + +++ + G + Sbjct: 121 KEEAKVKRWQAIAESAAKQSKRSLVPRVSGIMTLKEAFDYVESQGFSVRLIPYEHEAGMD 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +L A ++A+ IGPEGG+ E E S V P+SLG RILR++TA +A ++ Sbjct: 181 GTKTELDAAGPGQDIAVFIGPEGGFDEREIELALSKG-VRPISLGRRILRTETAGLALLS 239 Query: 236 LVQAIC 241 ++ Sbjct: 240 VLMMRL 245 >gi|228879506|ref|YP_457473.2| 16S ribosomal RNA methyltransferase RsmE [Erythrobacter litoralis HTCC2594] Length = 276 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 25/262 (9%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66 RLFV P+ T G+ HYL V+R+ GD ++L + GEW K++ V K I Sbjct: 13 PRLFVPEPIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRIVT 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + R + + D + +K +R D +++K+ E+G+ AIRPV+TR N +R Sbjct: 73 LEPVEKLREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---------------- 170 R AAEQC LP + P L+ LL++W + + FADE Sbjct: 133 ARAIVTEAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSES 192 Query: 171 ------TCGSENSLEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 G + L+ A A+LIGPEGG+ E++ + + P ++LGPR Sbjct: 193 LRRQGPQAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPR 252 Query: 223 ILRSDTAAVAAMALVQAICGDW 244 ILR +TAA+AA AL GDW Sbjct: 253 ILRGETAAIAATALWMGTVGDW 274 >gi|78486164|ref|YP_392089.1| hypothetical protein Tcr_1823 [Thiomicrospira crunogena XCL-2] gi|78364450|gb|ABB42415.1| Conserved hypothetical protein with DUF 558 [Thiomicrospira crunogena XCL-2] Length = 245 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 12/247 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R ++ + Q HY VLR+K+ I +F+GK + + + G+ Sbjct: 2 RIPRFYLPVTFQEGERISLDKAQAHYALTVLRLKDQRPIEVFDGKGHQAHATLQVTGRKT 61 Query: 66 RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + S +S +Q + K +R+DY IQKSVE+G+ AI+P+ T Sbjct: 62 ADVFIERCESVNTESPLQTVLLQGISKGDRMDYTIQKSVELGVTAIQPLFTERCDVKLTG 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + I+A EQ + +P + PP + L +V + E++ Sbjct: 122 DRLDKKRTQWQDIAINACEQSNRNVVPAVLPPLSYSDWLSTQTLVSGLVLSPTA---EHT 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ L + +V +LIGPEGG EE + +TP+ LGPRILR++TA V ++ + Sbjct: 179 LQTLPSSLSEQSVHLLIGPEGGLTDEEVLQ-GTQKGLTPIQLGPRILRTETAGVVVLSAL 237 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 238 QTLWGDF 244 >gi|90412046|ref|ZP_01220053.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK] gi|90327024|gb|EAS43403.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK] Length = 225 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80 S D +++ V+RM+ G +LLF+G + E+ + IS K +V+ Q R++ Sbjct: 2 LSDDAANHVGRVMRMQVGQEVLLFDGSNAEFPAVISAASKK-NVEVDIQCRNENSIESPL 60 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 ++ + ++++ IQKSVE+G+ I P+I+ + + + + I+A Sbjct: 61 NIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERCGVKLNAERFEKKLSQWQKIVIAA 120 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P LE ++ S N+L + + V +LI Sbjct: 121 CEQCGRNVIPEIRPVMKLEDWCAEEYDGLKLNLHPRANYSINTLPE-----PVSKVRLLI 175 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG +EE F + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 GPEGGLSAEEISMTEQYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223 >gi|331085961|ref|ZP_08335044.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406884|gb|EGG86389.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 246 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 112/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64 ++ FV + +G +++ +VLRM+ G+ + + +G + ++L +I K Sbjct: 1 MQHFFVVPDQVRDGYIEITGSDVNHMKNVLRMRTGEQLEISDGNNKKYLCEIESLEADKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E + S + K+++++ +IQK+VE+G+ + PV T+ + Sbjct: 61 TARILEEREAENELPSKLYLFQGLPKSDKMELIIQKAVELGVWEVIPVATKRAVVKLDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 +R + SAA+Q +P I + L + ++ + G + + Sbjct: 121 KAAKKRERWSGISESAAKQAGRNVIPEIKQVMNFQEALSYAKSLDVLLIPYELAEGMQAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E++ AI +V I IGPEGG+ EE + P++LG RILR++TA + ++++ Sbjct: 181 KERIQAIQPGQSVGIFIGPEGGFEQEEVKLAMEAGAY-PITLGRRILRTETAGMTMLSVL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|91794324|ref|YP_563975.1| hypothetical protein Sden_2974 [Shewanella denitrificans OS217] gi|91716326|gb|ABE56252.1| protein of unknown function DUF558 [Shewanella denitrificans OS217] Length = 244 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R++ L I D ++ VLRM EG+ ++LFNG ++L+ I+ K Sbjct: 2 RVPRIYQSIAQLEIGQAYSLDEDGAAHIGRVLRMSEGEQVMLFNGDGKDYLADITSASKK 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +S + + + +R+++ IQKSVE+G+ I P+ + Sbjct: 62 NITITIISMEDNRSESGLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSERCGVKLT 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +++ + ISA EQ +P I P + + ++ Sbjct: 122 GERLEKKINQWQKIVISACEQSGRSQVPLIRPAMDVAAWCQEPSQALKLNLHPRASHGIK 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L P V +LIGPEGG SEE F T + LGPR+LR++TA++ A+ Sbjct: 182 GLTL-----ENPRVRLLIGPEGGLSSEEILMTEQCDF-TDVLLGPRVLRTETASLTAITA 235 Query: 237 VQAICGD 243 +Q GD Sbjct: 236 LQLTFGD 242 >gi|118590628|ref|ZP_01548029.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614] gi|118436604|gb|EAV43244.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614] Length = 252 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 100/233 (42%), Positives = 149/233 (63%), Gaps = 6/233 (2%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 K +++RLF+ L + +A Q +YL +VLR+K+GD +L+FNG DGEWL+KI Sbjct: 3 KYEFNMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDYVLVFNGTDGEWLAKIVSN 62 Query: 62 GKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G+ ++ ++R QT +D+ Y+F+P+K RLDYM+QK+VEMG G+++PV+T++TQ + Sbjct: 63 GRRDCTLQLMERTREQTSANDLMYMFAPLKHARLDYMVQKAVEMGAGSLKPVLTQHTQAS 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENS 177 N++R+ I AAEQC +L +P + P L +L W +++F DE G+ N Sbjct: 123 RINLERMEANVIEAAEQCGVLAVPEVLAPQPLADVLSVWAEAQPGRRLLFCDEAEGTNNP 182 Query: 178 LEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L L + +AILIGPEGG+ EE+ L SL FVTP+ LGPRILR+DT Sbjct: 183 LLSLAQMKENGPQPLAILIGPEGGFSEEERSLLRSLDFVTPIPLGPRILRADT 235 >gi|226952621|ref|ZP_03823085.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] gi|226836610|gb|EEH68993.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] Length = 239 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + + +H+ VLR KE + + FNGK GE+L ++ + K Sbjct: 1 MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTVINKKNA 60 Query: 67 FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 Q +T +V K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +D R+ I+A EQC + +P I P +L +K+ + V A + L Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 P++A+LIGPEGG E ET + F +G R+LR++TA V A++++ Sbjct: 181 ------NSTPDIALLIGPEGGLSETEIETANQYQF-KNWCIGDRVLRTETAPVVALSILN 233 Query: 239 AIC 241 Sbjct: 234 YHF 236 >gi|161831038|ref|YP_001597773.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA 331] gi|212211957|ref|YP_002302893.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii CbuG_Q212] gi|161762905|gb|ABX78547.1| conserved hypothetical protein [Coxiella burnetii RSA 331] gi|212010367|gb|ACJ17748.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212] Length = 244 Score = 254 bits (651), Expect = 6e-66, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 5 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121 + ++ + +T+ S ++ ++ ++DY IQK+VE+G+ I P+IT T+ Sbjct: 65 VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + IS EQ +P + +L L +V +NSL Sbjct: 125 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 181 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +LIGPEGG +E + F L LGPRILR++TA V A++L+QA Sbjct: 182 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 238 Query: 242 GD 243 GD Sbjct: 239 GD 240 >gi|92112185|ref|YP_572113.1| hypothetical protein Csal_0049 [Chromohalobacter salexigens DSM 3043] gi|91795275|gb|ABE57414.1| 16S rRNA m(3)U-1498 methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 242 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 15/244 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 R+ V L + ++A LR++EG + LF+G+ E ++I VG+ +R Sbjct: 4 PRIHVAATLVAAAELTLPEGASRHVAGALRLREGAALRLFDGEGHEADAEIVAVGRREVR 63 Query: 67 FKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ + V + K +R+DY IQK+ E+G+ AI P+ T + + Sbjct: 64 VRITAVTEGGAESPLAVHLGQAISKGDRMDYAIQKATELGVAAITPLYTEHGDVRLKGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +SA EQC +P ++PP TL+ L D ++V T Sbjct: 124 EAKKLAHWQAVAVSACEQCGRSRVPTVHPPQTLDAWLARRDETLRLVLHPSTD------T 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + VA+L+GPEGG E +T + F L+LGPRILR++TA V A+ L+Q Sbjct: 178 TWRHASDVARVALLVGPEGGLSPNEIDTARAADFA-ALTLGPRILRTETAPVVALTLLQY 236 Query: 240 ICGD 243 GD Sbjct: 237 HFGD 240 >gi|294649934|ref|ZP_06727326.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824163|gb|EFF82974.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 239 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + + +H+ VLR KE + + FNGK GE+L ++ + K Sbjct: 1 MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTEINKKNA 60 Query: 67 FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 Q +T +V K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +D R+ I+A EQC + +P I P +L +K+ + V A + L Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 P++A+L+GPEGG E ET + F +G R+LR++TA V A++++ Sbjct: 181 ------NSTPDIALLVGPEGGLSETEIETANQYQF-KNWCIGDRVLRTETAPVVALSILN 233 Query: 239 AIC 241 Sbjct: 234 YHF 236 >gi|212217753|ref|YP_002304540.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii CbuK_Q154] gi|212012015|gb|ACJ19395.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154] Length = 270 Score = 254 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 31 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 90 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121 + ++ + +T+ S ++ ++ ++DY IQK+VE+G+ I P+IT T+ Sbjct: 91 VEITIDSKEAGRTESSLFIELGQGIFRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 150 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + IS EQ +P + +L L +V +NSL Sbjct: 151 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 207 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +LIGPEGG +E + F L LGPRILR++TA V A++L+QA Sbjct: 208 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 264 Query: 242 GD 243 GD Sbjct: 265 GD 266 >gi|150390795|ref|YP_001320844.1| hypothetical protein Amet_3045 [Alkaliphilus metalliredigens QYMF] gi|149950657|gb|ABR49185.1| protein of unknown function DUF558 [Alkaliphilus metalliredigens QYMF] Length = 254 Score = 254 bits (650), Expect = 8e-66, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 15/251 (5%) Query: 7 LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FV + GD ++ VLR+ GD + + +G+ E++ +I + K Sbjct: 1 MNRFFVVPSQVNQQARTISIVGDDVKHIGKVLRLVVGDLVEVCDGQALEYIGRIDEISKE 60 Query: 65 -IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + +E Q T+ V+ K +++ +IQK+ EMG+ I PV+T T Sbjct: 61 QVTLSIEKQENIFTEPPIQVRLYQGIPKATKMELIIQKTTEMGISDIIPVMTDRTIVQFN 120 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172 ++ ++R + A++Q +P I+ P T L+ + N V A E Sbjct: 121 NEKDREKKVERWQKIADEASKQSKRGKIPRIHIPMTYTKALEACNENDLNVLAYEKEKTM 180 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G + + L I + ++ I IGPEGG+ +E E S V ++LGPRILR++TA A Sbjct: 181 GLKALIASLVEITEVKSIGIWIGPEGGFTGKEIEKALSHD-VRSITLGPRILRTETAGFA 239 Query: 233 AMALVQAICGD 243 ++++ GD Sbjct: 240 VLSMLMYELGD 250 >gi|89074101|ref|ZP_01160600.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34] gi|89050037|gb|EAR55563.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34] Length = 225 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 16/229 (6%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80 S D +++ V+RM+ G +L+F+G + E+ + I+ K +VE QSR + Sbjct: 2 LSDDAANHVGRVMRMQAGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVENNIESPL 60 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 D+ + +++++ IQKSVE+G+ I P+I+ + +++ + I+A Sbjct: 61 DIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLEQWQKIAIAA 120 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQC +P I P LE ++ S N+L + N+ +LI Sbjct: 121 CEQCGRNVVPTIRPVMKLEQWCAEEYDGLKLNLHPRAKYSINTLPT-----PVTNLRLLI 175 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG +EE F + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 GPEGGLSAEEIGMTEEYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223 >gi|294501300|ref|YP_003565000.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium QM B1551] gi|294351237|gb|ADE71566.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium QM B1551] Length = 250 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ + + D H+++ V+RM EG + N + L KI + + Sbjct: 1 MQRYFLPNDQFQEQSVIVTQDDAHHISRVMRMNEGSQFIACNEQGQAALCKIENISANEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E+ S + V + K ++L+ +IQK E+G P I + + Sbjct: 61 KASIIEWISEEKELPVHVTIVNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +DR AAEQ +P + P + + L++ V A E + Sbjct: 121 KSQKKLDRWNKIAKEAAEQSHRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGET 180 Query: 179 EKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 LH A+ +V +++GPEGG +E E L F GPRILR++TA + A+ Sbjct: 181 SHLHAVLSALKPGNSVLVVVGPEGGLTEQEVEVLEENEFTIS-GFGPRILRAETAPLYAL 239 Query: 235 ALVQA 239 + + Sbjct: 240 SAISY 244 >gi|325983172|ref|YP_004295574.1| ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp. AL212] gi|325532691|gb|ADZ27412.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp. AL212] Length = 248 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R + + + S + H+ VLR+K G+ I +FNG GE+ + I + KS Sbjct: 4 RFYHPEEITPGKIIELSAENKHHATRVLRLKNGNPITIFNGLGGEFSAHIEAISKSSATV 63 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + Y + ++ + ++D++IQKSVE+G+ I+PV T + + + Sbjct: 64 LIDAYHHTDRESPLSIELAQAICINEKMDWIIQKSVELGITRIQPVFTARSIVHLSDERS 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSL 178 + + + ISA EQC LP + P L L H V + + N L Sbjct: 124 YKRLQHWKKIIISACEQCGRNCLPQVLPLIPLAEWLSQKKTSHCANDVHLMLSTRTTNGL 183 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + A N+ ++IGPEGG+ +EE+ + F+ PL LG RILR+++AA+A +A +Q Sbjct: 184 KNISKPAADANITLVIGPEGGFTAEEETAISYSGFI-PLRLGKRILRTESAALATIAAMQ 242 Query: 239 AICGDW 244 A+ GD+ Sbjct: 243 ALWGDY 248 >gi|164685878|ref|ZP_01945479.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918716|ref|ZP_02218802.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|164601398|gb|EAX33970.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917544|gb|EDR36148.1| conserved hypothetical protein [Coxiella burnetii RSA 334] Length = 244 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R++ L + + YHYL +VLR++EG I+LFNG + +I+ + K Sbjct: 5 RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121 + ++ + +T+ S ++ ++ ++DY IQK+VE+G+ I P+IT T+ Sbjct: 65 VEITIDSKEAGRTESSLFIELGQGIFRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + IS EQ +P + +L L +V +NSL Sbjct: 125 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 181 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +LIGPEGG +E + F L LGPRILR++TA V A++L+QA Sbjct: 182 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 238 Query: 242 GD 243 GD Sbjct: 239 GD 240 >gi|254464533|ref|ZP_05077944.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium Y4I] gi|206685441|gb|EDZ45923.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium Y4I] Length = 221 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83 DQ HYL V+R+ G + LFNGKDGEWL++++ GK + Q++ D+ Sbjct: 2 DRDQAHYLFGVMRLAAGAAVALFNGKDGEWLAEVAEAGKRGGTLVCQEQTKPLQLPPDLW 61 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 +F+PIK R D++++K+ EMG I PV T +T + DR++ + + AAEQC + Sbjct: 62 LLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSERIRQDRLQAHAVEAAEQCGGTYV 121 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + L LL W Q++F DE N+L+ AILIGPEGG+ Sbjct: 122 PEVADSQKLSRLLDQWPRERQLMFCDEAEVG-NALQLAAETQKDVPWAILIGPEGGFSEA 180 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E++ LH+LP +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 181 ERKRLHALPQSHVVSLGPRILRADTAAVAAMTLWQQALGDW 221 >gi|90409107|ref|ZP_01217229.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3] gi|90309781|gb|EAS37944.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3] Length = 275 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 19/251 (7%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ R + + + + + + ++ HVLR+KEG NI+LFNG G++ + + Sbjct: 34 MRY----PRFYDPQSFSLHNEFELADNVAQHI-HVLRLKEGLNIILFNGLGGQFTATLIN 88 Query: 61 VGK-SIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 V K S K+ +++ + + + R++++IQKSVE+G+ I P+++ Sbjct: 89 VKKRSCTVKITAFTQTDNESPLHLHLGQVISRGERMEFIIQKSVELGVNEITPLLSERCG 148 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + + + I+A EQ +P ++PP ++ Q+ Sbjct: 149 VKVNVERMAKKHQQWQKIAIAACEQSGRNIVPIVHPPQQMQQWCTQSTDALQLTLHPRAL 208 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S +L +I N+ +LIGPEGG E +L F L LGPR+LR++TA + Sbjct: 209 LSIKTLPD-----NISNIRLLIGPEGGLSDGEINLTKTLNFTETL-LGPRVLRTETATLT 262 Query: 233 AMALVQAICGD 243 A++ +Q GD Sbjct: 263 AISALQFRFGD 273 >gi|239627767|ref|ZP_04670798.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517913|gb|EEQ57779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 249 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV + + +G +++ + LRMK G+ +L+ +G ++ +S + Sbjct: 1 MHHFFVAPAQVMGDCIRITGPDVNHMKNALRMKPGEEVLISDGTGTDYRCALSSLDSDCV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR------YTQ 118 V + S + K+++++ +IQK+VE+G I PV T+ + Sbjct: 61 EARIVSVDRDGRELPSRIWLFQGLPKSDKMELIIQKAVELGAACIVPVSTKNAVVKLDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175 R + SAA+Q +P + TL ++ +++ + G E Sbjct: 121 KEEAKRKRWQAIAESAAKQSGRSLMPEVMGLMTLGQAFDYIEKEQFALRLIPYEHEAGME 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 S ++L + ++A+ IGPEGG+ E V P+SLG RILR++TA +A ++ Sbjct: 181 GSRQELSRVGPGQDIAVFIGPEGGFDEAEINLALKKG-VRPVSLGKRILRTETAGLAMLS 239 Query: 236 LVQAIC 241 ++ Sbjct: 240 VLMMRL 245 >gi|260556741|ref|ZP_05828959.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260410000|gb|EEX03300.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 240 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + D + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPASKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|89056403|ref|YP_511854.1| 16S ribosomal RNA methyltransferase RsmE [Jannaschia sp. CCS1] gi|88865952|gb|ABD56829.1| protein of unknown function DUF558 [Jannaschia sp. CCS1] Length = 245 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 94/237 (39%), Positives = 133/237 (56%), Gaps = 1/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLFVD PL S D +YL +V+R+ G + LFNG DGEW ++++ GK Sbjct: 8 RLFVDHPLGEAQSVPVSRDHANYLFNVMRLDAGAGVALFNGTDGEWRAEVAAKGKRGGVL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+ Q D+ +F+PIK R D++++K+ E+G+ + PV T T D++ Sbjct: 68 VCKEQTAPQVMPPDMWLLFAPIKKARTDFIVEKAAELGVARVCPVRTERTNAERIRQDKL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + +LE +L WD +VFADE +S A Sbjct: 128 QAHAMEAAEQCGGTYVPPVEDIRSLEKVLDGWDDRRALVFADEAEAGRSSSLAAVLAAAP 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P AILIGPEGG+ E+ L ++P V LSLGPRILR+DTAAVAA+ L Q GDW Sbjct: 188 PPAAILIGPEGGFSDAERARLRAMPNVHVLSLGPRILRADTAAVAALTLWQEHVGDW 244 >gi|306841708|ref|ZP_07474395.1| conserved hypothetical protein [Brucella sp. BO2] gi|306288238|gb|EFM59622.1| conserved hypothetical protein [Brucella sp. BO2] Length = 242 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 106/249 (42%), Positives = 145/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYLAHVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ D Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQVPRLGTD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L LP + WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLALPDCREALRFDRFRDQWDTSRRLIFCDEGHESDDPLSILAGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|222084972|ref|YP_002543501.1| hypothetical protein Arad_1026 [Agrobacterium radiobacter K84] gi|221722420|gb|ACM25576.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 245 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 145/226 (64%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFV + +A +Q++YLA+VLRM++G +L+FNG+DGEW ++IS+ Sbjct: 1 MRANFRMQRLFVVSDIKANAGIEADQEQFNYLANVLRMEDGAELLIFNGRDGEWKARISF 60 Query: 61 VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I ++R Q SD+ Y+F+P+K RLDY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PSRKRILMTPIEETRPQPAPSDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N+D+VR I AAEQC IL +P + P L LL+ W +I++ DE +N L Sbjct: 121 KITNLDKVRANVIEAAEQCGILGIPDVAEPVKLADLLERWPRERRIIYCDEGDAGQNPLP 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L I ++A+L+GPEGG+ EE+ L SL FVT + LGPRILR Sbjct: 181 LLAKITE-KHLALLVGPEGGFSEEERALLRSLDFVTAIPLGPRILR 225 >gi|294010080|ref|YP_003543540.1| hypothetical protein SJA_C1-00940 [Sphingobium japonicum UT26S] gi|292673410|dbj|BAI94928.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 253 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 4/238 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL V+ L G+ HYL V+R+K D +LLF+G+ GEW +K + K + Sbjct: 18 PRLHVETQLGEGVSVPVDGNPAHYLISVMRVKADDIVLLFDGRSGEWAAKARDIRKRDLV 77 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V ++R D +PI+ R+D + +K+ E+G+ ++PV+TR N+DR Sbjct: 78 LEVVSRTRPPEDVPDFWLCCAPIRKGRIDLVAEKACELGVARLQPVLTRRAVVDKLNLDR 137 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + + + AAEQC LP + L+ LL++W + FADE+ G E + L A H Sbjct: 138 LYAHLVEAAEQCGRTALPELGQMAKLDALLRDWPEGRWLFFADES-GGEPLADTLKA--H 194 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 A LIGPEGG+ E+E + + P+SLGPRILR++TAA+AA + I GDW Sbjct: 195 PGPAAFLIGPEGGFDPAEREAIRRVAKAIPVSLGPRILRAETAAIAATSAWMTINGDW 252 >gi|323527358|ref|YP_004229511.1| hypothetical protein BC1001_3037 [Burkholderia sp. CCGE1001] gi|323384360|gb|ADX56451.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1001] Length = 246 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ + + Sbjct: 1 MPRFFVGTPLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRAV 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R + +++D++I+K+VE+G + P+ T + + Sbjct: 60 TVKIREFRDIEVEPPYRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCG 173 ++ EQC LP + P + L +I+ + Sbjct: 120 RALRRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRVPAGDELRILLSPRASI 179 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L A V +L+GPEGG+ + E+ F + LGPR+LR++TA +A Sbjct: 180 H---FSALPASPPKGPVTVLVGPEGGFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGIAV 235 Query: 234 MALVQAICGDW 244 ++ + A G W Sbjct: 236 LSALAATWGGW 246 >gi|94501841|ref|ZP_01308353.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65] gi|94426062|gb|EAT11058.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65] Length = 241 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 17/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVG-K 63 + R++ PL H++ VLRM+ G + +FNG + + I + K Sbjct: 2 RIPRIYTPQPLGEHNLIDLDDASAHHVGKVLRMEAGRQLKVFNGSGHRYFDATIVHADRK 61 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ ++ E + S + K +++++ IQK+VE+G+ I P+ + + Sbjct: 62 KVQVRLGESHASSTESPLSIHLGQVMSKGDKMEFTIQKAVELGVTDITPLWSEHCDVKLN 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + ISA EQ +P ++P +E L N + + + + + Sbjct: 122 QERLEKKHKQWLGIIISACEQSGRDVIPHLHPTIKIEDWLANMETDVKWLL-------DP 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + +VAI +GPEGG+ E + F + L +GPR+LR++TAA+ A+ + Sbjct: 175 GAEPLQSKVAPKSVAIAVGPEGGFSEGEVKLAQQQGFQSQL-IGPRVLRTETAALTAITI 233 Query: 237 VQAICGDW 244 +Q+ GD+ Sbjct: 234 LQSRWGDF 241 >gi|329888452|ref|ZP_08267050.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta ATCC 11568] gi|328847008|gb|EGF96570.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta ATCC 11568] Length = 239 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 133/239 (55%), Gaps = 3/239 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + RL V L + DQ YL V+R+K GD +L+FNG+DGEW ++ V K + Sbjct: 1 MIRLHVQGDLAPGAVVAPTLDQSRYLTQVMRLKAGDELLVFNGRDGEWRVSVAEVLKKGV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + E Q R Q D++ I + +K R++ +++K+ E+G +R +T T +D Sbjct: 61 ILRAEEQMRPQVYGPDLELIVAVVKKARVETIVEKAAELGAKRVRLALTHRTNADRLRLD 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ AAEQ L +P + P L+ LL W+ +++F DET G+ A Sbjct: 121 RLDAIAEEAAEQTGRLDVPVVDDPVKLDALLDGWEAGRRLMFCDETGGA--PAASALTQA 178 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 AILIGPEGG+ EE E L SLPF T +SLGPRILR+DTAA+AAM L QA GDW Sbjct: 179 GDGKWAILIGPEGGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 237 >gi|299769311|ref|YP_003731337.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp. DR1] gi|298699399|gb|ADI89964.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp. DR1] Length = 240 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ +S + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTLENFNPNNRNAPFKAVLGQVMSKGDRMDYAIQKATELGVSKIQLLTSDRCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + + + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLNEWLSSSELPQSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|209886372|ref|YP_002290229.1| hypothetical protein OCAR_7260 [Oligotropha carboxidovorans OM5] gi|209874568|gb|ACI94364.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] Length = 246 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 131/221 (59%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RLFVD PL + + +Q HYL +VLR+ D +L+FNG+DGEW ++I+ + + Sbjct: 9 PRLFVDAPLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQITGRKRLEQL 68 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q+R Q D+ +F+P+K RLDYM+QK+VEMG + P +T++TQ + N++R+ Sbjct: 69 TPLEQTRPQDPPCDLHLLFAPLKHARLDYMVQKAVEMGASRLTPTLTQFTQVSRINLERM 128 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC IL LP I P L L D +VF DE + L L A+ Sbjct: 129 RANAIEAAEQCGILNLPEIDEPLPLTGRLAERDGKRLLVFCDEAAPQASPLAALKEAAND 188 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +LIGPEGG+ +E+ L + P + LSLGPRILR+DT Sbjct: 189 GGLDVLIGPEGGFSEDERAALLAQPRLVRLSLGPRILRADT 229 >gi|317405816|gb|EFV86104.1| hypothetical protein HMPREF0005_02771 [Achromobacter xylosoxidans C54] Length = 243 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 10/242 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D PL + H+ VLR++ G+ ++LFNG+ GE+ + + GK+ Sbjct: 4 PRFFCDAPLSAGARIALPEALAHHAIRVLRLRAGEPMVLFNGQGGEYPAVLEIEGKAGFA 63 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 ++ + R + + +++D++++K+VE+G + P+ + + Sbjct: 64 QLGAFDPREAELAGRITLVQGLPAGDKMDWVVEKAVELGAAHVCPIAAQRSVLQLAGPRL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + SAAEQC L + P L L +++ + + + Sbjct: 124 EKRVAHWQRIAQSAAEQCGRNRLMAVDAPMALADWLAQPADGLRLLCHPDADA--DLAGR 181 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A + ++ +L+GPEGG+ +E V + GPR+LR++TA +A ++ A+ Sbjct: 182 LGATPGLQSLTLLVGPEGGWSDKELALAREAG-VQAVRFGPRVLRTETAGLALISAAGAL 240 Query: 241 CG 242 G Sbjct: 241 LG 242 >gi|134094087|ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas arsenicoxydans] gi|133737990|emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 241 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L I H++ V+R+ GD I LFNG+ GE+ + IS + K Sbjct: 1 MPRFYCPQALVIGAVVTLPEHVAHHI-QVIRLSAGDAITLFNGEGGEYTATISTIEKKRV 59 Query: 67 FKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R + + + +++D++I+K+VE+G A++P+ ++ + Sbjct: 60 TAEIKIFEPREVELPYAITLAQALPEASKMDWIIEKAVELGAHALQPLASQRCVVRLSAE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 M + I+A+EQ L + P D + +I+ + E SL Sbjct: 120 RAAKKMQHWQGIIIAASEQSGRNRLTTLAEPADFNQWATQQDLHVRIMLSPRA---EQSL 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +VA++IGPEGG+ +E+ + LS+GPR+LR++TA +AA+A + Sbjct: 177 SDWARHHPPQSVALMIGPEGGFTEKEETQAIANG-ALMLSMGPRVLRTETAGMAAIAALN 235 Query: 239 AICG 242 A+ G Sbjct: 236 AVWG 239 >gi|295677690|ref|YP_003606214.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002] gi|295437533|gb|ADG16703.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002] Length = 246 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FVD L D ++A VLR++ GD+++LFNG+ GE+ +++ V + S Sbjct: 1 MPRFFVDALLYPDDVIALPDDVVRHVA-VLRLQPGDSLVLFNGRGGEYGAELVEVERRSA 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R K+ E+++ + +++D++I+K+VE+G P+ T + + Sbjct: 60 RVKIGEFRAVEVEPPYRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATARSVVRLTGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCG 173 + ++ EQC LP + P + L + +++ + Sbjct: 120 RAQRRQQHWQGVVRASCEQCGRNRLPDVTPVGEIGPWLDTLSREPAPDELRLLLSPRASI 179 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L V +LIGPEGG ++E+ F T + LGPR+LR++TA +A Sbjct: 180 G---FAALPDAPPPGGVTLLIGPEGGLSADEEAAAVEQGF-TAVGLGPRVLRTETAGIAV 235 Query: 234 MALVQAICGDW 244 +A + A G W Sbjct: 236 LAALAARWGGW 246 >gi|297584653|ref|YP_003700433.1| hypothetical protein Bsel_2365 [Bacillus selenitireducens MLS10] gi|297143110|gb|ADH99867.1| protein of unknown function DUF558 [Bacillus selenitireducens MLS10] Length = 250 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 109/245 (44%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64 ++R FV+ + +GD H+++ V+RM +GD I+ +G G + + G+ Sbjct: 1 MQRYFVEADQMKEDLFILTGDDAHHISKVMRMTDGDRIICCMPDGSCGTATIQSTAEGRV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + +V K ++L+ +IQK+ E+G+ ++ PV + + Sbjct: 61 HAELETWLKETSEMPVEVTLAQGLPKGDKLELIIQKATELGVSSVIPVQMSRSIAKIDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R R AAEQ +P I P + + + ++ A E G + Sbjct: 121 KAGKKVVRWRKIAKEAAEQAHRNRVPCISEPVSFTRVQGLVEEYDLVIAAYEEEGKAGNH 180 Query: 179 EK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L+ + + ++IGPEGG+ EE E L V +S+GPRILR++TA + + Sbjct: 181 HALPVLLNGLLPGQRILVIIGPEGGFSPEEIEKLERAG-VRSVSIGPRILRTETAPLYVL 239 Query: 235 ALVQA 239 A V Sbjct: 240 AAVSY 244 >gi|220932114|ref|YP_002509022.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H 168] gi|219993424|gb|ACL70027.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H 168] Length = 249 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 121/247 (48%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R FV G+ Y+++ + LR+ GD +++ G ++++ I + ++ I Sbjct: 1 MHRFFVSEEQIRDDLVIIKGNDYNHIVNSLRLNPGDKLIVCPGNCRDYVATIEEIKENQI 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ + +++ + S ++ + K ++D +IQK+ E+G+ +I P+ T T + Sbjct: 61 TGKIIKEYKNRNEPSLNITLAQALPKKRKMDLVIQKATEIGVRSIIPLKTTRTIVRLNKK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 DR + AA+Q +P + +L+ L + + I+ E +N Sbjct: 121 KERKKTDRWQKIAKEAAKQSGRGRIPTVERVYSLKELTQFKSNFDLIIIPWEEEQGKNLK 180 Query: 179 EKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L ++ I + ++IGPEGG+ EE + + L + P++LGPRILR++TA + + + Sbjct: 181 NVLSTVNVSEISKILVIIGPEGGFPPEEIKFIEQLGGI-PITLGPRILRTETAGLVVLTM 239 Query: 237 VQAICGD 243 + GD Sbjct: 240 LLYESGD 246 >gi|240114827|ref|ZP_04728889.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID18] gi|260441357|ref|ZP_05795173.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae DGI2] gi|268600483|ref|ZP_06134650.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291044717|ref|ZP_06570426.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|268584614|gb|EEZ49290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291011611|gb|EFE03607.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 241 Score = 252 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L N +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSENTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+ Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAITA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|254503148|ref|ZP_05115299.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii DFL-11] gi|222439219|gb|EEE45898.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii DFL-11] Length = 264 Score = 252 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 96/230 (41%), Positives = 147/230 (63%), Gaps = 6/230 (2%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 K ++RLF+ L + +A Q +YL +VLR+K+GD +L+FNG DGEWL+KI Sbjct: 15 KYEFKMQRLFLRHILADGARIEADRGQANYLLNVLRLKDGDYVLVFNGSDGEWLAKIQSS 74 Query: 62 GKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G+ ++ ++R QT +D+ Y+F+P+K RLDYM+QK+VEMG G++ PV+T++TQ++ Sbjct: 75 GRRACSLQLMERTRDQTAPNDLIYMFAPLKHARLDYMVQKAVEMGAGSLMPVMTQHTQSS 134 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCGSENS 177 N++R+ I AAEQC +L++P + P +L+ +L W +++F DE + N Sbjct: 135 RVNVERMEANVIEAAEQCGVLSVPTVLSPMSLKDVLTAWPEAHAGRKLLFCDEGEETNNP 194 Query: 178 LEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L L + P +AILIGPEGG+ +E+ L L FVTP+ LGPRILR Sbjct: 195 LLTLVQLKENGPPPLAILIGPEGGFSKDERGLLKDLDFVTPIPLGPRILR 244 >gi|160895341|ref|ZP_02076112.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50] gi|156863034|gb|EDO56465.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50] Length = 248 Score = 252 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--K 63 + R FVDF + +G+ +++ +VLR+K D I++ +G+ ++ +IS + K Sbjct: 1 MNRFFVDFDGRVFDKSIDITGEDVNHIKNVLRLKVNDEIIISDGRGRDYRCQISVMDHEK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ ++++ K ++++++IQK+VE+G+ I PV+T+ T Sbjct: 61 VVADILDVCDNFAELETEITLFQGFPKADKMEWIIQKTVELGVTRIVPVMTKRTVVKLDA 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + +R + ++AA+Q +P + P T + L + ++ +E G Sbjct: 121 KKAGKKTERYQAIALAAAKQSGRGVIPEVTAPVTWKEALAMAKELDMNMIPYEEAEGVAY 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S E +I ++ I IGPEGG+ EE + ++LG RILR++TA +A M++ Sbjct: 181 SKEVFASIKGKKSLGIFIGPEGGFAGEEVVAATDMG-AKMVTLGHRILRTETAGMAVMSI 239 Query: 237 VQAIC 241 + Sbjct: 240 IMFEL 244 >gi|193077877|gb|ABO12758.2| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978] Length = 240 Score = 252 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + D + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|237747297|ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229378648|gb|EEO28739.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 243 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 15/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RLF DFPL + D ++ V+R+ G+ I LFNG+ GE+ ++I G++ R Sbjct: 1 MTRLFCDFPLAVGACLDLPKDTARHIM-VVRLSRGEAITLFNGQGGEYRARILETGRN-R 58 Query: 67 FKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + E S S ++ + + ++D++I+K+ E+G+ I P+ T+ + Sbjct: 59 VRAEIVSFSPHEVELPYEISLVQGIPEAGKMDWIIEKAAELGVHRIVPLATQRSVVRVNA 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R ++ +SA+EQC L I P + L+N +I+F+ +S Sbjct: 119 DRIEKRLARWQSIVVSASEQCGRNRLLAIGQPVNFDAYLQNSPEPSKIMFSPRAS---HS 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L +++LIGPEGG+ +EE+E VT LS+GPRILR++TA +AA++ + Sbjct: 176 LASWATGQKPHAISLLIGPEGGFSAEEEELARQKG-VTFLSMGPRILRTETAGLAAVSAI 234 Query: 238 QAIC 241 AI Sbjct: 235 NAIW 238 >gi|254496687|ref|ZP_05109550.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254354115|gb|EET12787.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 242 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ S + ++A VLRM+ G+ + LF G + E+ + I V K Sbjct: 5 RIYQPGSYQSNELLALSPEASQHVAVVLRMQIGEQLTLFCGDNREFTATIEAVKKKQVMV 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + ++ + + K R++ ++QK+VE+G+ I P+I+ + Sbjct: 65 TVNAVTAINKESPLAIHLAQAISKGERMELVMQKAVELGVTRITPIISERCVVKLDQERM 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + + I+A EQ T+P I+PP TL L+ +++ G++N + Sbjct: 125 GKKLHQWQAIVIAACEQSGRNTVPVIHPPLTLARYLQEESAQLKLILHP--GGNKNWRDY 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + N+A+LIGPEGG E + + F PLSLGPRILR++TAA+ A++++QA+ Sbjct: 183 TFTQS---NIALLIGPEGGLSDAEVHSASAQGF-QPLSLGPRILRTETAAITALSVLQAV 238 Query: 241 CGD 243 GD Sbjct: 239 AGD 241 >gi|169632941|ref|YP_001706677.1| hypothetical protein ABSDF1185 [Acinetobacter baumannii SDF] gi|169151733|emb|CAP00535.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 240 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + +LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQAILFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPVDRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + D + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|220920410|ref|YP_002495711.1| hypothetical protein Mnod_0365 [Methylobacterium nodulans ORS 2060] gi|219945016|gb|ACL55408.1| protein of unknown function DUF558 [Methylobacterium nodulans ORS 2060] Length = 267 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 104/243 (42%), Positives = 139/243 (57%), Gaps = 7/243 (2%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-R 66 RLF+D P+ + Q +YL VLR EGD +L+FNG+DGEW ++I G+ Sbjct: 9 PRLFLDLPMREGMRHSLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWRAEIQPTGRKAGD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + Q+R QT ++ Y+F+P+K RLDY+ QK+VEMG IRPVITR TQ +DR Sbjct: 69 LILREQTRPQTPPGNLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC ILT+P I L L + +VF DE + + L Sbjct: 129 LRANAIEAAEQCGILTIPEIAEAAPLPAALSALEAERLLVFCDEDAPVADPIMTLRQAGA 188 Query: 187 IPN------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +A++IGPEGG+ EE+ + P LSLGPRILR+DTAAVA +ALVQA+ Sbjct: 189 GREGNGGLPLAVVIGPEGGFTPEERALILDRPNTVRLSLGPRILRADTAAVAVLALVQAV 248 Query: 241 CGD 243 GD Sbjct: 249 LGD 251 >gi|170740484|ref|YP_001769139.1| hypothetical protein M446_2244 [Methylobacterium sp. 4-46] gi|168194758|gb|ACA16705.1| protein of unknown function DUF558 [Methylobacterium sp. 4-46] Length = 265 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 103/249 (41%), Positives = 140/249 (56%), Gaps = 13/249 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-R 66 RLF+D P+ Q +YL VLR EGD +L+FNG+DGEW ++I G+ Sbjct: 9 PRLFLDVPMAEGVVHGLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWWAEIRPTGRKAGD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + ++R QT+ D+ Y+F+P+K RLDY+ QK+VEMG IRPVITR TQ +DR Sbjct: 69 LVLRRRTRPQTEPGDLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R + AAEQC IL +P I L L + + +VF DE + + L Sbjct: 129 LRANAVEAAEQCGILAIPEIAEAAPLTEALAALEADRLLVFCDEDAPVRDPVAALRQGVA 188 Query: 187 IP------------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 P +A++IGPEGG+ EE+ + P LSLGPRILR+DTAAVA + Sbjct: 189 RPPAGAGRGGNVPLPLAVVIGPEGGFTPEERALILERPTTIRLSLGPRILRADTAAVAVL 248 Query: 235 ALVQAICGD 243 ALVQA+ GD Sbjct: 249 ALVQAVLGD 257 >gi|240015737|ref|ZP_04722277.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA6140] Length = 241 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L N +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSENTRLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|291615399|ref|YP_003525556.1| hypothetical protein Slit_2944 [Sideroxydans lithotrophicus ES-1] gi|291585511|gb|ADE13169.1| protein of unknown function DUF558 [Sideroxydans lithotrophicus ES-1] Length = 245 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 12/245 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R + PL + T + + H+ + VLR++ GD + +F+G + I+ + Sbjct: 4 PRFYCPPPLPLATNFELPPEAAHHASRVLRLRVGDAVQIFDGLGNALDATINAINGKHVL 63 Query: 68 KVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 Q+ Q + + + ++D+++QK+ E+G I PV T + Sbjct: 64 LGNLQTFMGQQESGLHIALAQAMCTSEKMDWVVQKATELGAAEIIPVQTLRSVARLSSPR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + R +SA EQC TLP + P L L++ H F G+ N Sbjct: 124 AEKRAEHWRNVAVSACEQCGRNTLPQLQTPQELGTWLEDVRHTAGGKFILLPGGAINL-- 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +LIGPEGG+ ++E F+ P+ LGPR+LR++TAA+A +A +Q Sbjct: 182 -QSQPRPQGRATLLIGPEGGFTADEANIAQQAGFI-PILLGPRVLRTETAALAGIAALQT 239 Query: 240 ICGDW 244 + GD+ Sbjct: 240 LWGDF 244 >gi|260549771|ref|ZP_05823988.1| RNA methyltransferase [Acinetobacter sp. RUH2624] gi|260407288|gb|EEX00764.1| RNA methyltransferase [Acinetobacter sp. RUH2624] Length = 240 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIESFNPANRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + + + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLNEWLSSSELPVSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLSGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|23099420|ref|NP_692886.1| hypothetical protein OB1965 [Oceanobacillus iheyensis HTE831] gi|22777649|dbj|BAC13921.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 255 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 15/249 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++R FV + + GD H++ V+R + G+ ++ + L+ I + + Sbjct: 1 MQRYFVSQENVTENSIRIIGDDVHHIQRVMRAQVGEKLICVSDNGRAALTYIIKLSDDYV 60 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 ++E + S V K ++ D ++QK E+G A P + Sbjct: 61 DVEIEKWLEESNELPVSVTIAQGIPKGDKFDLILQKGTELGADAFIPFQAERSVALWNDE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG---- 173 + H + R + A+EQ +P ++ L+ +L +FA E Sbjct: 121 KKYHKKVKRFQKILKEASEQSHRNRIPSLHSVMNLKQILDEASAYTVKLFAYEEEAKTEK 180 Query: 174 -SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S N + L I + + IGPEGG+ +E + L F+ P+ LG RILR++TAA+ Sbjct: 181 MSSNLVNTLQNILSHDKIILCIGPEGGFSIKEADQLRENGFI-PIRLGKRILRTETAALY 239 Query: 233 AMALVQAIC 241 A++ + Sbjct: 240 ALSSISYQL 248 >gi|262376600|ref|ZP_06069828.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308310|gb|EEY89445.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 236 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R ++D L I + + +H+ VLR + G++ LFNG+ GE+ ++ V K Sbjct: 1 MPRFYIDADLTIDVSLELTETVFHHWVKVLRAQVGESATLFNGQGGEYDVTLTEVAKKSA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + ++T + K +R+DY IQK+VE+G+ I+ + + + + Sbjct: 61 TVSVNAFNPANRTPKFQALLGQVMSKGDRMDYAIQKAVELGVSEIQLLTSDHCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +D + I+A EQC + +P I P +LE L N ++V A ++ Sbjct: 121 RDQKKLDHWQGIAIAACEQCGLNIVPEILAPMSLEKWLNTELPNTKLVLAPNKDETDVLA 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + ++A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 181 DATL------DLALLIGPEGGLSEAEISAANQKGFLN-WCIGERVLRTETAPVVALSILN 233 Query: 239 AIC 241 + Sbjct: 234 YVL 236 >gi|59802454|ref|YP_209166.1| hypothetical protein NGO2160 [Neisseria gonorrhoeae FA 1090] gi|240079873|ref|ZP_04724416.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA19] gi|240127370|ref|ZP_04740031.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268596016|ref|ZP_06130183.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268685742|ref|ZP_06152604.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|293397817|ref|ZP_06642023.1| ribosomal RNA small subunit methyltransferase E [Neisseria gonorrhoeae F62] gi|59719349|gb|AAW90754.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268549804|gb|EEZ44823.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268626026|gb|EEZ58426.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291611763|gb|EFF40832.1| ribosomal RNA small subunit methyltransferase E [Neisseria gonorrhoeae F62] Length = 241 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L N +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSENTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|110803459|ref|YP_699307.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens SM101] gi|110683960|gb|ABG87330.1| RNA methyltransferase, RsmE family [Clostridium perfringens SM101] Length = 250 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F + T K +G+ ++ VLR+K G+ +++ N + E+L ++ V K + Sbjct: 1 MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 K+ E + ++ K ++D ++QK VE+G+ I P IT + Sbjct: 61 SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVLEIIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ + A +Q +P + P + +L+ D +V E Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAM 180 Query: 181 LHAIAH---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++I + I NV I++GPEGG+ E E L ++LGPRILR++TA ++L+ Sbjct: 181 VNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239 Query: 238 QAICGD 243 Q GD Sbjct: 240 QYELGD 245 >gi|293609672|ref|ZP_06691974.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828124|gb|EFF86487.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 240 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + + + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|261493725|ref|ZP_05990243.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494547|ref|ZP_05991031.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309796|gb|EEY11015.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310615|gb|EEY11800.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 225 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 13/228 (5%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83 S D +++ VLRMK+G+ I+LF+G + + + + V K S ++S++ Sbjct: 2 LSEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLP 61 Query: 84 YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135 + + +R+++ IQKSVE+G+ I P+ + + + + + I+A Sbjct: 62 IHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAAC 121 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQC +P I P L K D ++ + L + V +LIG Sbjct: 122 EQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRELPNV----PKAGVRLLIG 177 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 EGG +EE S F T + LG R+LR++TA++AA+ +Q GD Sbjct: 178 SEGGLSAEEIAMTESEGF-TEVLLGKRVLRTETASLAAITALQVCFGD 224 >gi|328545108|ref|YP_004305217.1| hypothetical protein SL003B_3491 [polymorphum gilvum SL003B-26A1] gi|326414850|gb|ADZ71913.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1] Length = 252 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 6/233 (2%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + +RLF+ L Q +A Q +YL +VLR+ + D +L+FNG+DGEWL++I+ Sbjct: 3 RYDFRTQRLFLRHGLADGGQVEADRAQANYLLNVLRLADDDRVLVFNGRDGEWLAEIAAA 62 Query: 62 G-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G K+ ++ ++R QT Q D+ Y+F+P+K RLDYM+QK+VEMG GA+RPV+TR+T + Sbjct: 63 GRKACTLRLVERTRPQTPQPDLHYLFAPLKHARLDYMVQKAVEMGAGALRPVMTRHTHAS 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSENS 177 N++R+ + AAEQC +++LP + P L+ +L W D +++F DE S + Sbjct: 123 RINLERMEANVVEAAEQCGVISLPDVRAPAALDAVLAAWPQADAGRRLLFCDEGEESHSP 182 Query: 178 LEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L L +A +A+L+GPEGG+ EE+ L LPFV P+ LGPRILR+DT Sbjct: 183 LPVLARLAGEGPSPLALLVGPEGGFSKEERALLRGLPFVVPIPLGPRILRADT 235 >gi|240013291|ref|ZP_04720204.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae DGI18] gi|240120363|ref|ZP_04733325.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 241 Score = 251 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|325122892|gb|ADY82415.1| hypothetical protein BDGL_001829 [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 251 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ +S + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + + + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|325204878|gb|ADZ00332.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis M01-240355] Length = 241 Score = 251 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLADIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|90419943|ref|ZP_01227852.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335984|gb|EAS49732.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 280 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 139/219 (63%), Gaps = 2/219 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIR 66 RL++D L +T A+ Q +YL +V+R+ EG +L FNG+DGEW ++ K + Sbjct: 41 PRLYLDTDLVAETPVPATPVQANYLLNVMRLGEGAQVLAFNGRDGEWRCELVKAAKKKLD 100 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + R QT +D+ Y+F+P+K RLDYM+QK+VEMG G ++PV+T++ Q T N +R Sbjct: 101 LVPRERVRDQTPPADLHYLFAPLKHARLDYMVQKAVEMGAGVLQPVMTQHVQATRLNTER 160 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC IL++P P LL WD +++F DE + + ++ L A+ Sbjct: 161 MRANAIEAAEQCGILSIPECREPVKFNDLLDRWDSGRRLIFCDERADAASPIDTLRALPE 220 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 P+ A++IGPEGG+ ++E+E L++ FVT +SLGPRILR Sbjct: 221 GPH-ALVIGPEGGFSADERERLNAADFVTAISLGPRILR 258 >gi|169795277|ref|YP_001713070.1| hypothetical protein ABAYE1140 [Acinetobacter baumannii AYE] gi|184158858|ref|YP_001847197.1| hypothetical protein ACICU_02538 [Acinetobacter baumannii ACICU] gi|213158057|ref|YP_002320108.1| hypothetical protein AB57_2769 [Acinetobacter baumannii AB0057] gi|215482810|ref|YP_002325013.1| RNA methyltransferase family protein [Acinetobacter baumannii AB307-0294] gi|301346012|ref|ZP_07226753.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter baumannii AB056] gi|301510423|ref|ZP_07235660.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter baumannii AB058] gi|301595608|ref|ZP_07240616.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter baumannii AB059] gi|332850384|ref|ZP_08432704.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013150] gi|332871823|ref|ZP_08440246.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013113] gi|169148204|emb|CAM86067.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183210452|gb|ACC57850.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|213057217|gb|ACJ42119.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213988086|gb|ACJ58385.1| RNA methyltransferase family protein [Acinetobacter baumannii AB307-0294] gi|332730655|gb|EGJ61966.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013150] gi|332731152|gb|EGJ62452.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013113] Length = 240 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P L L + D + V A E Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPIALHEWLNSSDLPVSKFVLAPEKEQK--- 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G RILR++TA V A++++ Sbjct: 178 -DVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRILRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|239998111|ref|ZP_04718035.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae 35/02] gi|240112081|ref|ZP_04726571.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae MS11] gi|240124855|ref|ZP_04737741.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254492891|ref|ZP_05106062.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268593962|ref|ZP_06128129.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268598139|ref|ZP_06132306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268683436|ref|ZP_06150298.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226511931|gb|EEH61276.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268547351|gb|EEZ42769.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268582270|gb|EEZ46946.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268623720|gb|EEZ56120.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|317165554|gb|ADV09095.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae TCDC-NG08107] Length = 241 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|332875286|ref|ZP_08443118.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6014059] gi|323518770|gb|ADX93151.1| hypothetical protein ABTW07_2727 [Acinetobacter baumannii TCDC-AB0715] gi|332736543|gb|EGJ67538.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6014059] Length = 240 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + + +H+ VLR + + LFNG+ GE+L ++ + K Sbjct: 1 MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLVTLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + D + V A E + Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPTSKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|209966873|ref|YP_002299788.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum centenum SW] gi|209960339|gb|ACJ00976.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 260 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 135/237 (56%), Gaps = 2/237 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLFVD PL G + HYL VLRM+ G+ +L FNG+DGEWL++++ +GKS Sbjct: 8 RLFVDAPLSEGAAVPLEGGRAHYLRTVLRMQPGERVLAFNGRDGEWLAEVAQLGKSGGTL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + R QT + +F+P+K R D + +K+ E+G + PV TR T N++R+ Sbjct: 68 TALRRERDQTGEEGPWLLFAPLKGGRSDSVAEKATELGAAVLHPVFTRRTDVGRVNLERL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + AAEQC+ L++P + L L+ WD + A E+ + ++ + A Sbjct: 128 AANAVEAAEQCERLSVPEVREACPLFKALEGWDPARVLFVAAESGQAMPAVSAVTAQRGR 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P +L GPEGG+ E + L LPFV P+ LGPR+LR+DTAA A +A+ QA+ GDW Sbjct: 188 PAAWLL-GPEGGFDRAELDGLLHLPFVVPVGLGPRVLRADTAAFAVLAVWQALAGDW 243 >gi|146342924|ref|YP_001207972.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. ORS278] gi|146195730|emb|CAL79757.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 249 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 102/237 (43%), Positives = 149/237 (62%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RLFVD PL +Q +YL +VLR+ GD +L+FNG++GEW + I+ ++ Sbjct: 9 PRLFVDAPLIEGGAVALDRNQSNYLGNVLRLGAGDQVLVFNGREGEWQATIAGRKRADLL 68 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ + R Q + D+ Y+F+P+K RLDY++QK+VEMG ++PV+TR+TQ + N +R+ Sbjct: 69 TIQQRLRPQDQLPDITYVFAPLKHARLDYIVQKAVEMGAAVLQPVLTRHTQVSRLNGERM 128 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC IL+L + P LE L+ + +VF DE + ++ L A Sbjct: 129 RANVIEAAEQCGILSLAEVRDPVPLERFLRERMASRLLVFCDEAAEIADPVQALRGAAAN 188 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +LIGPEGG+ +EE+E L VT L+LGPRILR+DTA VAA+AL+QA GDW Sbjct: 189 AGIDLLIGPEGGFAAEERELLLRQRQVTRLALGPRILRADTAGVAALALLQATLGDW 245 >gi|325131649|gb|EGC54355.1| hypothetical protein TIGR00046 [Neisseria meningitidis M6190] gi|325137512|gb|EGC60095.1| hypothetical protein TIGR00046 [Neisseria meningitidis ES14902] gi|325141520|gb|EGC63990.1| hypothetical protein TIGR00046 [Neisseria meningitidis 961-5945] gi|325199017|gb|ADY94473.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis G2136] Length = 241 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLADIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|312110171|ref|YP_003988487.1| hypothetical protein GY4MC1_1064 [Geobacillus sp. Y4.1MC1] gi|311215272|gb|ADP73876.1| protein of unknown function DUF558 [Geobacillus sp. Y4.1MC1] Length = 249 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R FV GD YH++ HV+RM++G ++ L +I + + + Sbjct: 1 MQRYFVPDDQVENDHLIIQGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +VE QT+ YI K ++L+ +IQK E+G + P + + + Sbjct: 61 IVRVEEWINEQTELPVQIYIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 + ++R + AAEQ +P I+ P T++ L++ +FA E + Sbjct: 121 KANKKLERWKKIAKEAAEQSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNH 180 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + H ++ + GPEGG+ EE E L F + SLGPRILR++TA + + Sbjct: 181 RTLAAILRQMKHGQSLLAVFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 A Sbjct: 240 AAASYQF 246 >gi|312795128|ref|YP_004028050.1| surface protein [Burkholderia rhizoxinica HKI 454] gi|312166903|emb|CBW73906.1| surface protein [Burkholderia rhizoxinica HKI 454] Length = 271 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 18/250 (7%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 R FV PL D ++ HVLR++ GD +LFNG+ G++ +++ + K S Sbjct: 27 PRFFVPMPLHSGHSMPLPDDVVRHM-HVLRLQAGDKAILFNGEGGQFDAELLQLDKRSAT 85 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +V + +R V +++D++++K++E+G+ ++ P++T + + Sbjct: 86 VQVGRFDAREVEPPYRVVLAQGIAGGDKMDWLLEKAIELGVASVIPLVTARSVVRLTGER 145 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGS 174 + +A EQC LP + PPT + L++ D+ +++ + Sbjct: 146 AARRHAHWQALVRAACEQCGRNQLPDVAPPTDVMAWLESSVALPRDNALRLLLSPRA--- 202 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L A V ++IGPEGG + E+ S F+ PL LGPR+LR++TA +A + Sbjct: 203 ERPFAALPDTAPAAPVIVMIGPEGGLSATEEAAAISHGFM-PLGLGPRVLRTETAGIAVL 261 Query: 235 ALVQAICGDW 244 A + A G W Sbjct: 262 AALAARWGGW 271 >gi|326797241|ref|YP_004315061.1| ribosomal RNA small subunit methyltransferase E [Marinomonas mediterranea MMB-1] gi|326548005|gb|ADZ93225.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas mediterranea MMB-1] Length = 243 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++VD L T+ + + VLR+KEG I+LFNG GE+ + + V K Sbjct: 2 RIPRIYVDIDLTEHTEIILPDSAFQHCCKVLRLKEGHAIILFNGDGGEYDATLYNVQKRA 61 Query: 66 RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R V S + R+DY IQK+VE G+ I+P+ + + Sbjct: 62 ASAQLTTYRVLENESPLKVTIGQSLSRGERMDYAIQKAVESGVFRIQPLFSERCEVKLQE 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISAAEQC +P I P L ++ + +I + + Sbjct: 122 DRMEKRLKHWQQVAISAAEQCGRGVVPKILEPINLLDWVEKCNEMLKITLHHHSAKPIHD 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E+ ++A+LIGPEGG E E F ++LGPR+LR++TA V A+ + Sbjct: 182 FER----PPENSIALLIGPEGGLTDIEVEKASLFGF-QSIALGPRVLRTETAPVVALTTL 236 Query: 238 QAICGD 243 + GD Sbjct: 237 NLMWGD 242 >gi|295399227|ref|ZP_06809209.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius C56-YS93] gi|294978693|gb|EFG54289.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius C56-YS93] Length = 249 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R FV GD YH++ HV+RM++G ++ L +I + + + Sbjct: 1 MQRYFVPDDQVENDHLIIQGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +VE QT+ YI K ++L+ +IQK E+G + P + + + Sbjct: 61 IVRVEEWINEQTELPIQIYIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 + ++R + AAEQ +P I+ P T++ L++ +FA E + Sbjct: 121 KANKKLERWKKIAKEAAEQSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNH 180 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + H ++ + GPEGG+ EE E L F + SLGPRILR++TA + + Sbjct: 181 RTLAAILRQMKHGQSLLAVFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 A Sbjct: 240 AAASYQF 246 >gi|114800139|ref|YP_760086.1| 16S ribosomal RNA methyltransferase RsmE [Hyphomonas neptunium ATCC 15444] gi|114740313|gb|ABI78438.1| conserved hypothetical protein TIGR00046 [Hyphomonas neptunium ATCC 15444] Length = 256 Score = 250 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 14/255 (5%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 + + RLFVD PL +Q +YL VLR+++G ++ LFNG+DGEW + + Sbjct: 1 MATIPRLFVDAPLAEAGAVALDDEQSNYLLRVLRLEDGASVRLFNGRDGEWTATVHKTSA 60 Query: 63 KSIRFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 K Q+R+Q Q + + +F+P+K ++ D +++K+ E+G IRPV+T TQ Sbjct: 61 KRAEATPSRQTRTQPGQIGTRLTLLFAPVKKDQTDLILEKATELGAARIRPVLTERTQTR 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--------- 171 DR R + AAEQ + L LP I +L+ L + ++F DE Sbjct: 121 TVRADRFRKIALEAAEQTERLDLPEILDLASLDAALDALEPGTAVIFCDEAGDEAEAPWG 180 Query: 172 --CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 G + ++ + AIL GPEGG+ E+ L P+SLGPRILR++TA Sbjct: 181 GQAGRARPMLEVLEELKGRSAAILTGPEGGFTPAERAFLRGRAETWPVSLGPRILRAETA 240 Query: 230 AVAAMALVQAICGDW 244 A++AM L QA+CGDW Sbjct: 241 AISAMTLWQAVCGDW 255 >gi|325201437|gb|ADY96891.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis M01-240149] gi|325207417|gb|ADZ02869.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis NZ-05/33] Length = 241 Score = 250 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|147677216|ref|YP_001211431.1| 16S ribosomal RNA methyltransferase RsmE [Pelotomaculum thermopropionicum SI] gi|146273313|dbj|BAF59062.1| Uncharacterized protein conserved in bacteria [Pelotomaculum thermopropionicum SI] Length = 249 Score = 250 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 9/245 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV + +G ++ VLR+ GD + + +G+ + + I G + Sbjct: 1 MPRFFVSPEQIKDGRIIITGPDVVHITRVLRLGRGDCLTVLDGRGRSYEAVIEKAGAAEV 60 Query: 67 FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V + V + + +++D+++QK E+GM + P+I R + Sbjct: 61 VCVAGSVTAAGGLPAVKVTLVQGIPRGDKMDFIVQKGTELGMHRLIPLICRRSVVKLEGD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ++R R + A++QC +P + P + +L + E E Sbjct: 121 KSFRRLERWRRIALEASKQCRRPDVPEVDAPAGWDRVLAGMPPEAAALIPWEEEDGETLK 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L V + IGPEGG+ E + ++ V P++LGPRILR++TA +A + +V Sbjct: 181 DFLRRSLPKEEVYVFIGPEGGFDPGEVDKARAVG-VRPVTLGPRILRTETAGLAVLVMVL 239 Query: 239 AICGD 243 GD Sbjct: 240 YQWGD 244 >gi|194100123|ref|YP_002003263.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae NCCP11945] gi|240122667|ref|ZP_04735623.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID332] gi|268681265|ref|ZP_06148127.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|193935413|gb|ACF31237.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|268621549|gb|EEZ53949.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 241 Score = 250 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRIRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|91785218|ref|YP_560424.1| hypothetical protein Bxe_A0561 [Burkholderia xenovorans LB400] gi|91689172|gb|ABE32372.1| Conserved hypothetical protein 46 [Burkholderia xenovorans LB400] Length = 251 Score = 250 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + S Sbjct: 6 MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ E+++ + +++D++I+K+VE+G A P+ T + + Sbjct: 65 KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLTGE 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + ++ EQC LP + P + L + + +I+ + Sbjct: 125 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPRAS- 183 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S L A V +L+GPEGG+ + E+ F T + LGPR++R++TA +A Sbjct: 184 --ISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAGIAV 240 Query: 234 MALVQAICGDW 244 ++ + A G W Sbjct: 241 LSALAAGWGGW 251 >gi|262368644|ref|ZP_06061973.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316322|gb|EEY97360.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 238 Score = 250 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 17/242 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R F++ L + + + +H+ VLR + G+ LFNG+ GE+ +S V K Sbjct: 1 MPRFFMEAELNVDHTVELTETVFHHWVKVLRAQVGETATLFNGQGGEYEVTLSDVAKKSA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + ++T K +R+DY+IQK+VE+G+ I+ + + + Sbjct: 61 SVQVTAFNPTNRTPAFKALLGQVMSKGDRMDYVIQKAVELGVSEIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +D + I+A EQC + +P I P +LE L + ++V A Sbjct: 121 RDQKKIDHWQGIAIAACEQCGMNLVPKILAPVSLEKWLASELPATRLVLAPNK------- 173 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EKL +AH PN+A+LIGPEGG E T + F++ +G R+LR++TA V A++++ Sbjct: 174 EKLDVLAHATPNIALLIGPEGGLSEAEIITANEHGFIS-WCIGERVLRTETAPVVALSIL 232 Query: 238 QA 239 Sbjct: 233 NY 234 >gi|240117029|ref|ZP_04731091.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID1] gi|268602715|ref|ZP_06136882.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268586846|gb|EEZ51522.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 241 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|94311915|ref|YP_585125.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus metallidurans CH34] gi|93355767|gb|ABF09856.1| conserved hypothetical protein DUF558 [Cupriavidus metallidurans CH34] Length = 247 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 12/247 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R FVD L T + + VLR+ GD I LFNG+ G + ++ +GK Sbjct: 3 PRFFVDAALAADTVLELPDAVVRH-VQVLRLAPGDAITLFNGQGGSHPATLTEIGKRHAS 61 Query: 68 KVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + + V +++D++I+K+VE+G+ AI+P+ + + Sbjct: 62 ATLGTHDASEAETPFAVTLAQGLAGGDKMDWLIEKAVELGVSAIQPLQAARSVVRLSGER 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSL 178 + +A EQC LP + P LE L + ++ + S L Sbjct: 122 ATKRQAHWQALIEAACEQCGRNRLPALAPVANLESWLTSVPATAARLALSPRASASLPEL 181 Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + A V +LIGPEGG EE++ F+ +SLGPRILR++TA + +A + Sbjct: 182 AQAEREAWRAGGVTLLIGPEGGLSPEEEDRARRAGFI-GVSLGPRILRTETAGLTCLATL 240 Query: 238 QAICGDW 244 AI G + Sbjct: 241 NAILGGF 247 >gi|23010926|ref|ZP_00051451.1| COG1385: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 250 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 108/240 (45%), Positives = 142/240 (59%), Gaps = 4/240 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66 RLFV+ L Q +YL VLR E D +LLFNG+DGEW ++I G KS Sbjct: 9 PRLFVESDLAEGLILPLERAQANYLLTVLRRSETDPVLLFNGRDGEWRAEIVPQGRKSAD 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V ++R Q D+ Y+F+P+KT RLDYM QK+VEMG G IRPV TR+TQ ++R Sbjct: 69 LRVVTRTRPQPAPPDLHYLFAPLKTGRLDYMAQKAVEMGAGLIRPVFTRFTQGERIKLER 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL---EKLHA 183 +R + AAEQC IL++P I P L L +VF DE + + Sbjct: 129 LRANAVEAAEQCGILSIPEIAEPARLPACLDALAPERLLVFCDEDAPVSDPVAALRAAAD 188 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 AH P +A+L+GPEGG+H EE+ + + P LSLGPRILR+DTAAVA + LVQA+ GD Sbjct: 189 PAHPPPLAVLVGPEGGFHEEERALIAARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248 >gi|296160467|ref|ZP_06843283.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1] gi|295889216|gb|EFG69018.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1] Length = 246 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + S Sbjct: 1 MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ E+++ + +++D++I+K+VE+G A P+ T + + Sbjct: 60 KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + ++ EQC LP + P + L + + +I+ + Sbjct: 120 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPRAS- 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S L A V +L+GPEGG+ + E+ F T + LGPR++R++TA +A Sbjct: 179 --ISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAGIAV 235 Query: 234 MALVQAICGDW 244 ++ + A G W Sbjct: 236 LSALAAGWGGW 246 >gi|254804259|ref|YP_003082480.1| hypothetical protein NMO_0244 [Neisseria meningitidis alpha14] gi|304388478|ref|ZP_07370582.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091] gi|254667801|emb|CBA03770.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|304337534|gb|EFM03699.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091] Length = 241 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|293376255|ref|ZP_06622498.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909] gi|325845140|ref|ZP_08168449.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1] gi|292645147|gb|EFF63214.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909] gi|325488805|gb|EGC91205.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1] Length = 248 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R F+ Q + + + H++A V+RM+ G+ I++ N + I+ V + Sbjct: 1 MQRYFLKNHQFQAKQVRITDEDAHHIARVMRMEVGERIIVCNEDKECYYLTITAVTPDEV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ E +V K ++ +++IQK+ E G PV + Sbjct: 61 TGEIGEAIESDTELPIEVTIAQGLPKGDKFEWVIQKATECGATNFMPVSMERCVVKLDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R AAEQ +P ++ T + L+ H +FA E + L Sbjct: 121 KEVKKVERWNKIAKEAAEQSHRQVVPKVHSVHTFKAFLEQSKHYDVCLFAYEETAKQGEL 180 Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L I + +L+GPEGG +E + L F P +LGPRILR++TA + A+ Sbjct: 181 AQLKQTLENIKPGATLLLLVGPEGGVGEKEVDLLIQHGF-KPCALGPRILRTETAPIYAL 239 Query: 235 ALVQAIC 241 + + Sbjct: 240 SAISFAL 246 >gi|225574856|ref|ZP_03783466.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM 10507] gi|225037930|gb|EEG48176.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM 10507] Length = 246 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 +KR F + + +G+ +++ VLRM+EG+ + + +G+ E+ +I + I Sbjct: 1 MKRFFAKPEQIDEREIHITGEDVNHIRQVLRMREGEELWVSDGEKKEYHCRIKDFQQDEI 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 ++ Y S S + K ++++ +IQK+VE+G + PV T Sbjct: 61 LLEILYAQESDYELPSRIYLFQGLPKGDKMELIIQKAVELGAFEVIPVATSRCVVKLDKK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 +R + +AA+Q L +P I+P +L L + +++ + G + Sbjct: 121 KAAKKQERWQEIARNAAKQSRRLLVPQIHPVCSLREALDYSGSLDVKLLPYELAKGMRQT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L I ++ I IGPEGG+ EE E ++ V P++LG RILR++TA + ++++ Sbjct: 181 KETLAGIKRGQSIGIFIGPEGGFAPEEVEQAMAVG-VEPITLGKRILRTETAGMTVLSIL 239 Query: 238 QAICGD 243 D Sbjct: 240 MFQLED 245 >gi|21232316|ref|NP_638233.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767551|ref|YP_242313.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. campestris str. 8004] gi|188990664|ref|YP_001902674.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. campestris str. B100] gi|21114084|gb|AAM42157.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572883|gb|AAY48293.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732424|emb|CAP50618.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 244 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R +V PL + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSYVALPLHSGGDVTLPEESANHLLRVLRLREGDACVLFNGDGSDYHARITVAGKRE 61 Query: 66 RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 V + S + + + ++D ++QK+ E+G+ A+ PV T+ Sbjct: 62 ARAVVERVEAVSNEPPLAITLLQGIARGEKMDLILQKATELGVTAVVPVNAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 M R+ +SA EQ +P + PP++L+ + D + D E+ Sbjct: 122 ARLEKRMAHWRSVIVSACEQSGRARIPSLAPPSSLQDAARASDAQALRLTLD--PHGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A+ + + IGPEGG+ ++ TL F T L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-AVQPGQELIVAIGPEGGWSPRDRTTLGEAGF-TGLRLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|266621760|ref|ZP_06114695.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM 13479] gi|288866557|gb|EFC98855.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM 13479] Length = 245 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 116/241 (48%), Gaps = 10/241 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + FV+ + +G +++ +VLRMK G+ +L+ NG D +++ ++ + ++ Sbjct: 1 MYHFFVNQEQIGQDTVTVTGPDVNHIKNVLRMKPGEEVLISNGVDKDYVCRLQTITSDAV 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ + T+ + K+++++++IQK+VE+G+ + PV TR T + Sbjct: 61 TAEIVTVTEGGTELPAKFYLFQGLPKSDKMEFLIQKAVELGVYQVIPVETRRTVVKLDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENS 177 + R + SAA+Q L +P + T + L + I+ + G ++ Sbjct: 121 KVEAKVRRWNAVSESAAKQSKRLIIPEVTGVMTFQEALNYAGGFDKNIIPFEHAEGMADT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I + I IGPEGG+ EE V P++LG RILR++TA +A ++++ Sbjct: 181 KAYFAGIRPGMSCGIFIGPEGGFEDEEISQASEAG-VKPVTLGKRILRTETAGLAVLSVL 239 Query: 238 Q 238 Sbjct: 240 M 240 >gi|229163256|ref|ZP_04291211.1| RNA methyltransferase, RsmE [Bacillus cereus R309803] gi|228620319|gb|EEK77190.1| RNA methyltransferase, RsmE [Bacillus cereus R309803] Length = 249 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R++ AAEQ +P ++ P + + LL + + A E + Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSNEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEIAMLREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|239827772|ref|YP_002950396.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. WCH70] gi|239808065|gb|ACS25130.1| protein of unknown function DUF558 [Geobacillus sp. WCH70] Length = 249 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R FV + GD YH++ V+RM++G ++ + L KI + + + Sbjct: 1 MQRYFVSDDQVKNDRLIIQGDDYHHIVRVMRMEKGSELICVLPSNKAVLCKIEQITNEHV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V QT+ YI K ++L+++IQK E+G + P + + + Sbjct: 61 IVRVVKWIDEQTELPIQIYIAHGLPKGDKLEFVIQKGTELGASSFIPFVAARSIVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ++R + AAEQ +P ++ P T+ L++ VFA E + + Sbjct: 121 KANKKLERWKKIAKEAAEQSHRGKIPDVHAPMTIHELIEFAKTVDYRVFAYEEEAKQGNH 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L A+ ++ + GPEGG+ EE E F + SLGPRILR++TA + + Sbjct: 181 QTLAAVFQQMKRGHSLLAVFGPEGGFSDEEVELFKHHGFFS-CSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 A+ Sbjct: 240 AVASYQF 246 >gi|310643066|ref|YP_003947824.1| protein [Paenibacillus polymyxa SC2] gi|309248016|gb|ADO57583.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 254 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 15/250 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ ++ +G+ ++A V+R + GD I++ +G E L+ + + + Sbjct: 1 MQRYFIPAEQFLEDHVIVTGEDARHIAKVMRGRSGDKIIVSDGVSREALAALDTIEQDHV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + T + VQ + K ++++ ++QK E+G P ++ T + Sbjct: 61 KATIIEPLEMTSEPYVQITIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P + P T + LL ++ I + E Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEVSAPLTWKELLASFAGYDLICYCYEKEQGRQLR 180 Query: 179 EKLHAIA------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + A P V +++GPEGG+ E LG RILR++TA + Sbjct: 181 DVIQPFAGHWASTDKPRVLVVVGPEGGFTEAESLEAEQAG-AQSTGLGRRILRAETAGMV 239 Query: 233 AMALVQAICG 242 A+A + G Sbjct: 240 ALACILYETG 249 >gi|14026505|dbj|BAB53102.1| mll6903 [Mesorhizobium loti MAFF303099] Length = 238 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 99/220 (45%), Positives = 138/220 (62%), Gaps = 2/220 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++RLFV L + A Q HYL HVLR+ EG ILLFNG+DGEW + I+ K + Sbjct: 1 MQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAAKSKKAV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 R +V+ R Q D+ Y F+P+K RLDY++QK+VEMG G ++PVIT++TQ ++D Sbjct: 61 RLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQVAKPSID 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R + AAEQC IL +P + E LL WD ++VF DE + N L L A+ Sbjct: 121 RLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLPALRAVK 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +A+L+GPEGG+ +E++ L +LPFVT + LGPRILR Sbjct: 181 E-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILR 219 >gi|262278363|ref|ZP_06056148.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258714|gb|EEY77447.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 240 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F++ L + + + +H+ VLR + + LFNG+ GE+L+ ++ + K Sbjct: 1 MNRFFIETELTVGLTIQLTETVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVTIESFNPTNRSAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D + I+A EQC + +P + P +L L + + V A E + Sbjct: 121 RDQKKLDHWQAIAIAACEQCGLNLVPEVLAPISLSEWLSSTQLPASKFVLAPE----KEQ 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L I P +A+LIGPEGG E + F+ +G R+LR++TA V A++++ Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|170695362|ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M] gi|170139762|gb|EDT07944.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M] Length = 246 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV L + D ++ VLR++ GD+I+LFNG+ GE+ ++++ + + Sbjct: 1 MPRFFVGTSLSPDDIVQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELAAIERRAV 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R + +++D++I+K+VE+G + P+ T + + Sbjct: 60 TVKIREFRDIEVETPYRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCG 173 ++ EQC LP + P + L +I+ + Sbjct: 120 RAARRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLSAMPRVPAGDELRILLSPRAS- 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L A V +L+GPEGG+ + E+ F + LGPR+LR++TA +A Sbjct: 179 --IPFSALPAAPPKGPVTVLVGPEGGFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGMAV 235 Query: 234 MALVQAICGDW 244 ++ + A G W Sbjct: 236 LSALAAGWGGW 246 >gi|229543807|ref|ZP_04432866.1| protein of unknown function DUF558 [Bacillus coagulans 36D1] gi|229324946|gb|EEN90622.1| protein of unknown function DUF558 [Bacillus coagulans 36D1] Length = 250 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R F+D P + + + SG+ YH++A V+RM G + + +I + G ++ Sbjct: 1 MQRYFLDRPYRGEQEIRLSGENYHHIARVMRMSVGSRFYGVFSDEKVCICEIGEITGDAV 60 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 ++ +++ + V K ++L+++IQK E+G P V+ T+ Sbjct: 61 VARITGWETAVKELPVHVTVSCGLPKADKLEWIIQKGTELGAFQFLPFLAERSVVKWDTK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGS--- 174 +R + AAEQ LP I PP + + L++ + ++V +E Sbjct: 121 KEAKKRERWQKIAQEAAEQSHRSHLPEISPPVSFQQLIEESHTYQYKLVAFEENAKEGEQ 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L ++ NV + GPEGG +E L + FV+ LGPRILR++TA + + Sbjct: 181 HRFAELLSNMSEGGNVLAVFGPEGGLSLDEIRRLEAAGFVS-CGLGPRILRAETAPLYVL 239 Query: 235 ALVQAIC 241 + + Sbjct: 240 SAISYHF 246 >gi|121635582|ref|YP_975827.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18] gi|120867288|emb|CAM11059.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18] Length = 241 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK +++S++ K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLSFLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|261363907|ref|ZP_05976790.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996] gi|288567910|gb|EFC89470.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996] Length = 241 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R ++ L + + +L +VLR++ G+ ++LFNG + +++ + K Sbjct: 1 MSRFYLPDALYAGQVVELPDNVVRHL-NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + + + S R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 CAEVLREEETDNESPLKITLVQSVSSGERMDFTLQKSVELGVVAIQPVISERCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P LK + S N Sbjct: 120 RADKRVARWQEIVVSACEQSGRNIVPEVRPLLPYREALKQMSSETTKLLM-----SLNRA 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L A+ ++ ++GPEGG+ EE++ F ++LG R+LR++TA++AA+A + Sbjct: 175 QSLRAVKPFSDDLIFMVGPEGGWTDEEEQLAFEAGF-QSVTLGKRVLRTETASLAAIAAM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|73542528|ref|YP_297048.1| hypothetical protein Reut_A2843 [Ralstonia eutropha JMP134] gi|72119941|gb|AAZ62204.1| Conserved hypothetical protein 46 [Ralstonia eutropha JMP134] Length = 249 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 14/249 (5%) Query: 8 KRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R FV D L T + VLR+ GD I LF+G+ G + + +GK Sbjct: 3 PRFFVGSADAALAAGTDFDLPEAVVRH-VQVLRLAPGDAITLFDGRGGSHAATLLDLGKR 61 Query: 65 IRFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 E + V +++D++I+K+VE+G+ AI+P+ + Sbjct: 62 HALARVGERDNTETEPPFRVMLAQGLAGGDKMDWLIEKAVELGVTAIQPLQAARSVVRLS 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +A EQC LP + P T L+ L+ +++ + S Sbjct: 122 GDRAQKRQAHWQALVEAACEQCGRNRLPAVAPVTNLDTWLRAAGEGNRLLVSPRADQSLP 181 Query: 177 SLEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + ++ + V +LIGPEGG EE++ F T +SLGPRILR++TA +A +A Sbjct: 182 AYAAANRVSLLAGGVTLLIGPEGGLAPEEEDAALHAGF-TAVSLGPRILRTETAGLACLA 240 Query: 236 LVQAICGDW 244 + A+ G + Sbjct: 241 TLNALLGGF 249 >gi|292493337|ref|YP_003528776.1| hypothetical protein Nhal_3352 [Nitrosococcus halophilus Nc4] gi|291581932|gb|ADE16389.1| protein of unknown function DUF558 [Nitrosococcus halophilus Nc4] Length = 243 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL I + ++ VLR++ G + LF+G+ E+ + + V K Sbjct: 2 RVPRIYSSLPLSIGSSVVLDERALQHVVRVLRLRAGAELWLFDGRGTEYRAVLETVEKRS 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E R+ D+ + R+DY +QK+VE+G+ I P+ T + Sbjct: 62 AEARILERMERNVESPLDIILGQGISRGERMDYALQKAVELGVSGIVPLFTERSAVHLSG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R ISA EQC P + P +L L + ++ S Sbjct: 122 ERLEKRLRHWRGVVISACEQCGRNYTPGVDTPRSLAAFLGDCHAGLAVLLDPR---SHRP 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ L + + +LIGPEGG E + F+ +SLGPR+LR++TA VAA+ + Sbjct: 179 LKTLPSPL-GKRLILLIGPEGGLSEVEVKEAQQAGFI-DVSLGPRVLRTETATVAALTAL 236 Query: 238 QAICGD 243 Q + GD Sbjct: 237 QLLWGD 242 >gi|167757694|ref|ZP_02429821.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704] gi|167664576|gb|EDS08706.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704] Length = 245 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64 ++ FV + G +++ +VLRM+ G+ + + +G + ++ + G++ Sbjct: 1 MQHFFVTPSQVEGERIYIEGSDVNHMKNVLRMRPGEAVAISDGDNLKYRCVVEGYEEGRA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + + K ++++ ++QK+VE+G + PV TR + + Sbjct: 61 VLAIQQRMPVDTELPCRIILFQGLPKQDKMELIVQKAVELGASQVVPVATRRSVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 + R + SAA+Q +P + + + L+ + + ++ + G E + Sbjct: 121 KAAKKLQRWQQIAESAAKQAGRGYIPQVSSVLSYQEALEKAGELDVLLIPYELAEGMEEA 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +IA +V I IGPEGG+ EE + ++LG RILR++TA +A ++++ Sbjct: 181 RKVVASIAQGQSVGIFIGPEGGFEKEEVDAAIRQG-AKAITLGRRILRTETAGLAILSIL 239 Query: 238 QAIC 241 Sbjct: 240 MFRL 243 >gi|295706647|ref|YP_003599722.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium DSM 319] gi|294804306|gb|ADF41372.1| ribosomal RNA small subunit methyltransferase E [Bacillus megaterium DSM 319] Length = 250 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ + + D H+++ V+RM EG + N + L +I + + Sbjct: 1 MQRYFLPNDQFQEQSVIVTQDDAHHISRVMRMNEGSQFIACNEQGQAALCEIENISANEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E+ S + V + K ++L+ +IQK E+G P I + + Sbjct: 61 KASIIEWISEEKELPVHVTIVNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +DR AAEQ +P + P + + L++ V A E + Sbjct: 121 KSQKKVDRWNKIAKEAAEQSHRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGET 180 Query: 179 EKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 LH A+ +V +++GPEGG +E L F GPRILR++TA + A+ Sbjct: 181 SHLHAVLSALKPGHSVLVVVGPEGGLTEQEVGVLEENEFTIS-GFGPRILRAETAPLYAL 239 Query: 235 ALVQA 239 + + Sbjct: 240 SAISY 244 >gi|16079598|ref|NP_390422.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp. subtilis str. 168] gi|221310469|ref|ZP_03592316.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221314792|ref|ZP_03596597.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319715|ref|ZP_03601009.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323992|ref|ZP_03605286.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp. subtilis str. SMY] gi|1730989|sp|P54461|RSME_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|1303811|dbj|BAA12467.1| YqeU [Bacillus subtilis] gi|1890060|dbj|BAA12079.1| YqeU [Bacillus subtilis] gi|2634990|emb|CAB14486.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. subtilis str. 168] Length = 256 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 7 LKRLFVD-FPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ I+ +G++ H++ +V+RM EGD I+ + E ++ V K Sbjct: 1 MQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60 Query: 64 SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 +E+ + ++ V K ++L+++IQK E+G A P + Sbjct: 61 DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + + + LL+ + V A E + Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 180 Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + AI ++ I+ GPEGG E E L VT LGPRILR++TA + Sbjct: 181 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ + Sbjct: 240 YALSAISY 247 >gi|225076881|ref|ZP_03720080.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens NRL30031/H210] gi|224951767|gb|EEG32976.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens NRL30031/H210] Length = 241 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKS 64 + R +VDF L + + + +L +VLR+K + I+LFNG + + ++ ++ Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ ++ + + R+D+ +QKSVE+G+ IRPVI+ + Sbjct: 60 SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + +SA EQ +P + P TT L+ + S N Sbjct: 120 RAEKRVERWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQLPQETTKLLM-----SLNRA 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL + V ++GPEGG+ +E++ F ++LG R+LR++TA++AA+A + Sbjct: 175 QKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIAAM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|52081092|ref|YP_079883.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis ATCC 14580] gi|52786471|ref|YP_092300.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis ATCC 14580] gi|319644950|ref|ZP_07999183.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2] gi|52004303|gb|AAU24245.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348973|gb|AAU41607.1| YqeU [Bacillus licheniformis ATCC 14580] gi|317392759|gb|EFV73553.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2] Length = 255 Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ + G+ H++A V+RM GD ++ E +I V K Sbjct: 1 MQRYFIEQSKQEVTAAPAFSIKGEDVHHIATVMRMSPGDEVICCAKDGHEAKCRIESVTK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT- 120 + +T++ VQ + K ++L+++IQK E+G + P + Sbjct: 61 EEVLLSVIEWTGETRELPVQIHIANGLPKGDKLEWIIQKGTELGASSFIPFQASRSVVKL 120 Query: 121 -----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +R AAEQ +P + P T + LL++ + + V A E + Sbjct: 121 DEKKAKKKRERWAKIAKEAAEQSHRNAIPDVAPVHTFQRLLESLEDFDKCVVAYEESSKQ 180 Query: 176 NSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + L +++ +V ++ GPEGG+ EE E L LGPRILR++TA + Sbjct: 181 GETSRFQSVLKSLSEGSSVLMVFGPEGGFTEEEIEALKEKG-ALACGLGPRILRAETAPL 239 Query: 232 AAMALVQA 239 A+A V Sbjct: 240 YALAAVSY 247 >gi|307941761|ref|ZP_07657116.1| surface protein [Roseibium sp. TrichSKD4] gi|307775369|gb|EFO34575.1| surface protein [Roseibium sp. TrichSKD4] Length = 252 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 93/228 (40%), Positives = 147/228 (64%), Gaps = 6/228 (2%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 ++RLF+ L + +A Q +YL +VLR+K+GD +L F+G++GEWL++I G Sbjct: 5 EFKMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDKVLAFDGQNGEWLTEIKVTGR 64 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K+ ++ Q+R Q K +D+ Y+F+P+K RLDYM+QK+VEMG+G+++PV+T++TQ + Sbjct: 65 KACVLELVEQTRPQEKSADLLYLFAPLKHARLDYMVQKAVEMGVGSLQPVMTQHTQTSRV 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLE 179 N++R+ I AAEQC +L++P + P L+ LL NW ++F DE + N L Sbjct: 125 NLERMEANVIEAAEQCGVLSVPGVVEPEPLKALLANWPEKHPGRVLLFCDEGSETTNPLG 184 Query: 180 KLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L + A ++A+L+GPEGG+ +EE+ LH FV + LGPRILR Sbjct: 185 DLAKLVEAKPESIALLVGPEGGFSTEERSILHQSDFVVSIPLGPRILR 232 >gi|321312028|ref|YP_004204315.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5] gi|320018302|gb|ADV93288.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5] Length = 256 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 16/248 (6%) Query: 7 LKRLFVD-FPLCIKTQ--GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ I+ +G+ H++ +V+RM EGD I+ + E ++ V K Sbjct: 1 MQRYFIELTKQQIEEAPAFSITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60 Query: 64 SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 +E+ + ++ V K ++L+++IQK E+G A P + Sbjct: 61 DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + + + LL+ + V A E + Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 180 Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + AI ++ I+ GPEGG E E L V P LGPRILR++TA + Sbjct: 181 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGV-PCGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ + Sbjct: 240 YALSAISY 247 >gi|255065808|ref|ZP_05317663.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256] gi|255050126|gb|EET45590.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256] Length = 241 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R ++ L + + +L +VLR++ G+ ++LFNG + +++ + K Sbjct: 1 MSRFYLPDDLYAGQVVELPDNVVRHL-NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + + + S R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 CAEVLREEEADNESPLKITLVQSVSSGERMDFTLQKSVELGVVAIQPVISERCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P LK + S N Sbjct: 120 RADKRVARWQEIVVSACEQSGRNIVPEVRPLLPYREALKQMSSETTKLLM-----SLNRA 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L + ++ ++GPEGG+ EE+ F ++LG R+LR++TA++AA+A + Sbjct: 175 QSLRTVKPFSDDLIFMVGPEGGWTDEEERMAFEAGF-QSVTLGKRVLRTETASLAAIAAM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|194017737|ref|ZP_03056347.1| protein YqeU [Bacillus pumilus ATCC 7061] gi|194010637|gb|EDW20209.1| protein YqeU [Bacillus pumilus ATCC 7061] Length = 256 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 16/248 (6%) Query: 7 LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F+D + K +G+ H+L++V+RMK G IL E LSKI + K Sbjct: 1 MQRYFIDLTKEEVIAKGSIVINGEDVHHLSNVMRMKAGQEILCLTTDGFEGLSKIDTITK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 +Q ++ V+ + K ++L+ +IQK E+G A P + Sbjct: 61 EEVICHVEGWTNQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITKI 120 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +H +R AAEQ +P + P +T + L + + V A E E Sbjct: 121 DQKKSHKKRERWEKIAKEAAEQSYRNIIPRVDPVSTFKELTQLAGEFDKCVVAYEESSKE 180 Query: 176 NSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + L + + ++ GPEGG +E E L + V LGPRILR++TA + Sbjct: 181 GEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETHGAV-ICGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ + Sbjct: 240 YALSAISY 247 >gi|153828383|ref|ZP_01981050.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148876092|gb|EDL74227.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 243 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 14/230 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 L + V +LIGPEGG +EE + F L LGPR+LR++ Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTE 225 >gi|228999104|ref|ZP_04158686.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17] gi|228760721|gb|EEM09685.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17] Length = 249 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + GD H++A V+RM GD+I + I+ + Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAMCTIAEITSEFV 59 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 DSAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R++ AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L A+ + ++ GPEGG EE L F+ P SLGPRILR++TA + A+ Sbjct: 180 ANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|325127441|gb|EGC50371.1| hypothetical protein TIGR00046 [Neisseria meningitidis N1568] Length = 241 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLADIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|15640496|ref|NP_230123.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153823176|ref|ZP_01975843.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229509057|ref|ZP_04398545.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae B33] gi|229519725|ref|ZP_04409168.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC9] gi|229606238|ref|YP_002876886.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae MJ-1236] gi|254850701|ref|ZP_05240051.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744284|ref|ZP_05418237.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera CIRS 101] gi|9654895|gb|AAF93642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519302|gb|EAZ76525.1| conserved hypothetical protein [Vibrio cholerae B33] gi|229344414|gb|EEO09389.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae RC9] gi|229353982|gb|EEO18916.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae B33] gi|229368893|gb|ACQ59316.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae MJ-1236] gi|254846406|gb|EET24820.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738224|gb|EET93616.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera CIRS 101] Length = 243 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 14/230 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ P+ S D ++ VLRM+ G +LLF+G E+ + IS VGK Sbjct: 2 RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E S D+ + +++++ IQKSVE+G+ I P+++ Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + ISA EQC T+P I P LE ++ S N+ Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNT 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 L + V +LIGPEGG +EE + F L LGPR+LR++ Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTE 225 >gi|229006652|ref|ZP_04164286.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4] gi|228754513|gb|EEM03924.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4] Length = 249 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + GD H++A V+RM GD+I + I+ + Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAMCTIAEITSEFV 59 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 DSAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R++ AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMNSDYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L A+ + ++ GPEGG EE L F+ P SLGPRILR++TA + A+ Sbjct: 180 ANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|229086882|ref|ZP_04219041.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44] gi|228696392|gb|EEL49218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44] Length = 249 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAMCTIDEITSEFV 59 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 DSTIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R++ AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPDVHAPASFKQLLAMSSDYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + H + I+ GPEGG +E L F+ P SLGPRILR++TA + A+ Sbjct: 180 ANFAKALTTLEHGQKLLIVFGPEGGLSEDEISALREYKFL-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|15677755|ref|NP_274919.1| hypothetical protein NMB1925 [Neisseria meningitidis MC58] gi|7227182|gb|AAF42254.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254670885|emb|CBA07409.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|316985547|gb|EFV64494.1| RNA methyltransferase family protein [Neisseria meningitidis H44/76] gi|325133384|gb|EGC56048.1| hypothetical protein TIGR00046 [Neisseria meningitidis M13399] gi|325139579|gb|EGC62119.1| hypothetical protein TIGR00046 [Neisseria meningitidis CU385] gi|325143638|gb|EGC65957.1| hypothetical protein TIGR00046 [Neisseria meningitidis M01-240013] gi|325200977|gb|ADY96432.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis H44/76] gi|325206833|gb|ADZ02286.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis M04-240196] Length = 241 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|23464129|gb|AAN33944.1| conserved hypothetical protein TIGR00046 [Brucella suis 1330] Length = 242 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 103/249 (41%), Positives = 145/249 (58%), Gaps = 22/249 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R +V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K +LDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235 P+ +LIGPEGG+ EE++ LH LPFVT + LGPRILR Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229 Query: 236 LVQAICGDW 244 LVQA+ GDW Sbjct: 230 LVQAVLGDW 238 >gi|190575526|ref|YP_001973371.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas maltophilia K279a] gi|190013448|emb|CAQ47083.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 245 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R +D L + ++L V+R++EGD +LFNG ++ + ++ GK Sbjct: 2 RVTRCPIDLALHSGQTVTLPEETANHLVRVMRLREGDTCVLFNGDGHDYSATLTAAGKRE 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 ++ +++ Q+ + + + ++D ++QK+ E+G+ AI PV T+ Sbjct: 62 VQVRIDAVQAVDNESPLAITLLQGIARGEKMDLILQKATELGVSAIVPVNAERTEVKLDV 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + SA Q +P + P +L + + D + Sbjct: 122 ARAEKRVAHWNNVVTSACGQSGRARIPQVGSPVSLAQAATTLPADTLRLTLD--PHGAHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A A + I IGPEGG+ +++ L + F L LGPRILR++TA +AA+A + Sbjct: 180 LSTLDA-APTGGIVIAIGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 QA GD Sbjct: 238 QARLGD 243 >gi|21243796|ref|NP_643378.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas axonopodis pv. citri str. 306] gi|21109388|gb|AAM37914.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R +VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ LP + P L+ + D + + D E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + ++ + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LGTLASSIQ-QHIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|157693044|ref|YP_001487506.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus pumilus SAFR-032] gi|157681802|gb|ABV62946.1| hypothetical protein BPUM_2277 [Bacillus pumilus SAFR-032] Length = 256 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 16/248 (6%) Query: 7 LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F+D + K G+ H+L++V+RMK G IL E LSKI + K Sbjct: 1 MQRYFIDLTKEEVIAKGAIVIKGEDVHHLSNVMRMKAGQEILCLTTDGFEALSKIDTITK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 +Q ++ V+ + K ++L+ +IQK E+G A P + Sbjct: 61 EEVLCHLEGWTNQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITKL 120 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +H DR AAEQ +P +YP +T + L + + V A E E Sbjct: 121 DQKKSHKKRDRWEKIAKEAAEQSYRNIIPHVYPVSTFKELTQLASEFDKCVVAYEESSKE 180 Query: 176 NSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + L + + ++ GPEGG +E E L +L V LGPRILR++TA + Sbjct: 181 GEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETLGAV-ICGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ + Sbjct: 240 YALSAISY 247 >gi|228993054|ref|ZP_04152977.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442] gi|228766702|gb|EEM15342.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442] Length = 249 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + GD H++ V+RM GD+I + I+ + Sbjct: 1 MQRYFVEEKYVNDASIRIVGDDVHHIVRVMRMSVGDHIYCCV-NGKTAMCTIAEITSEFV 59 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 DSAIVEWGEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R++ AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L A+ + ++ GPEGG EE L F+ P SLGPRILR++TA + A+ Sbjct: 180 ANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|326386680|ref|ZP_08208302.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium nitrogenifigens DSM 19370] gi|326208995|gb|EGD59790.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium nitrogenifigens DSM 19370] Length = 255 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 4/238 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV PL G Q HYL V+R+ GD ++L + GEW ++ VGK + Sbjct: 17 PRLFVTGPLGDGVSVTIEGGQAHYLVRVMRIAPGDVVVLCDDATGEWATQAGPVGKRDLV 76 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + R + D + +K +R D +++K+ E+G+ +RP++ R N +R Sbjct: 77 LTCTTRLREREDVPDFWLCPALLKKDRFDLVLEKASELGVARLRPMLARRCVADKLNPER 136 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R I AAEQC LP P +E LL +W + + FADE G+ + AH Sbjct: 137 ARATLIEAAEQCARTALPQCDAPVRIEALLADWPQDRTLFFADENGGAPAAAS---FAAH 193 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +L+GPEGG+ E+ + + P P++LGPRILR +TAA+AA +L +CGDW Sbjct: 194 PGPAGLLVGPEGGFDEAERAAIRAHPAAVPITLGPRILRGETAAIAATSLWMGLCGDW 251 >gi|291484991|dbj|BAI86066.1| hypothetical protein BSNT_03788 [Bacillus subtilis subsp. natto BEST195] Length = 256 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 7 LKRLFVD-FPLCIKTQ--GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ I+ +G+ H++ +V+RM EGD I+ + E ++ V K Sbjct: 1 MQRYFIELTKQQIEEAPAFSITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60 Query: 64 SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 +E+ ++++ V K ++L+++IQK E+G A P + Sbjct: 61 DKVSCLVIEWTNKNRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + + + LL+ + V A E + Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 180 Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + AI ++ I+ GPEGG E E L VT LGPRILR++TA + Sbjct: 181 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ + Sbjct: 240 YALSAISY 247 >gi|261379381|ref|ZP_05983954.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703] gi|284797829|gb|EFC53176.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703] Length = 241 Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKS 64 + R +VDF L + + + +L +VLR+K + I+LFNG + + ++ ++ Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ ++ + + R+D+ +QKSVE+G+ IRPVI+ + Sbjct: 60 SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P TT L+ + S N Sbjct: 120 RAEKRVARWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQLPQETTKLLM-----SLNRA 174 Query: 179 EKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL + V ++GPEGG+ +E++ F ++LG R+LR++TA++AA+A + Sbjct: 175 QKLSDVQPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIAAM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|258516359|ref|YP_003192581.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum acetoxidans DSM 771] gi|257780064|gb|ACV63958.1| protein of unknown function DUF558 [Desulfotomaculum acetoxidans DSM 771] Length = 257 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 12/248 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R++V Q +G + ++ VLR+ GD + + +G+ G + ++I+ K Sbjct: 1 MTRVYVPPTRIKGRQACITGTEMEHVNRVLRLAAGDEVTIIDGEGGVFSARITGKNKEKV 60 Query: 67 FKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 F + + K++++D ++QK E+G+ + P+ + Sbjct: 61 FCEITAEGLPDNEPPVKITLVQGLPKSDKMDLIVQKGTELGLSTLIPLQCERAIVRLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175 +R + + AA+QC P + + + +L++ + E G + Sbjct: 121 KAAQRQERWQRIAMEAAKQCKRGKHPSVERAMSWQEVLESLPEKALCLLPWEEETARGLK 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + L A + I IGPEGG+ E V P+SLGPRILR++TA +A ++ Sbjct: 181 SLRDNLEAKVPPFEIYIFIGPEGGFTRSEAAQARQYG-VIPVSLGPRILRTETAGIAVLS 239 Query: 236 LVQAICGD 243 ++ GD Sbjct: 240 IIMYEFGD 247 >gi|254281685|ref|ZP_04956653.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR51-B] gi|219677888|gb|EED34237.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR51-B] Length = 242 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 18/247 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R+F D PL + + ++ VLR+ G + +FNG ++ + I+ V K Sbjct: 2 RTPRIFADLPLAQGAEFTLPDNASLHIGRVLRLDSGQPLTVFNGDGEDYHATITTVTKR- 60 Query: 66 RFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 +E + T +V+ + K +R D+ +QK+ E+G+ I P+++ + Sbjct: 61 SVSIEVHSVATNGTTSPLEVELGLALSKGDRFDWAVQKATELGVAHITPLVSERVEVRLN 120 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ISA EQC TL + PT L L+ + ++V + + Sbjct: 121 PQREEKKRTHWHNIVISACEQCGRSTLAGVSSPTQLRPWLERVEAPLKLVLDHRSATALP 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 VA+LIGPEGG E E + F L LGPR+LR++TA V A+++ Sbjct: 181 E-------EKPDRVALLIGPEGGLTESELELAEASGF-QRLQLGPRVLRTETAPVVALSV 232 Query: 237 VQAICGD 243 + GD Sbjct: 233 LGNRWGD 239 >gi|331015976|gb|EGH96032.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 275 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 17/230 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ + Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P I+PP L +K + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 E L + A ++A LIGPEGG + E + + F LGPR+LR++ Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGF-HAARLGPRVLRTE 222 >gi|229174986|ref|ZP_04302505.1| RNA methyltransferase, RsmE [Bacillus cereus MM3] gi|228608447|gb|EEK65750.1| RNA methyltransferase, RsmE [Bacillus cereus MM3] Length = 249 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAICSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSNEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE TL FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|225568735|ref|ZP_03777760.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM 15053] gi|225162234|gb|EEG74853.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM 15053] Length = 245 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 112/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64 ++ FV G +++ +VLRMK G+ + + +G + ++L + G++ Sbjct: 1 MQHFFVTPFQVGNGYIFIEGQDVNHMKNVLRMKPGEELTVSDGDNRKFLCAVDRYEEGQA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + S + K ++++ ++QK+VE+G+ + PV+TR + + Sbjct: 61 VLKICREEMSDTELASRICLFQGLPKQDKMELIVQKAVELGVSEVVPVMTRRSVVRLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177 ++R ++ SA++Q +P + P L+ ++ E G + + Sbjct: 121 KAARKVERWQSIAGSASKQAGRGYIPKVAPVAGFGEALRQASAMDVLLIPYELAEGMQET 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +I +V + IGPEGG+ EE E V P++LG RILR++TA + ++++ Sbjct: 181 KRVISSIVPGQSVGVFIGPEGGFEREEVELAVEAGAV-PITLGRRILRTETAGLTTLSVL 239 Query: 238 QAIC 241 Sbjct: 240 MFHL 243 >gi|229577456|ref|YP_001126527.2| 16S ribosomal RNA methyltransferase RsmE [Geobacillus thermodenitrificans NG80-2] Length = 258 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV SGD H+++ V+RMK GD I + +I + Sbjct: 1 MQRYFVSDRERQGENVVISGDDAHHISRVMRMKPGDAIACVFPDGRTAVCQIEQIANEQV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 Q + + ++ V+ + K + + +IQK E+G P + + + Sbjct: 61 CARIVQWKEEGRELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175 ++R + AAEQ + LP + P +L+ L+ + +FA E G Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRH 180 Query: 176 NSLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 SL L A + ++ + GPEGG+ EE E L F+ P SLGPRILR++TA + + Sbjct: 181 ASLPALLADLQPGSSLLAVFGPEGGFSREEAEQLKQSGFL-PCSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 A Sbjct: 240 AAASYEW 246 >gi|163745648|ref|ZP_02153008.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45] gi|161382466|gb|EDQ06875.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45] Length = 219 Score = 248 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQY 84 +Q HYL V+R G +LLFNG+DGEWL++++ GK Q+R D+ Sbjct: 3 REQAHYLFGVMRQALGAGVLLFNGRDGEWLAEVTEAGKRGGVLTCVEQTRPLQMPPDLWL 62 Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144 +F+PIK R D++++K+ EMG I PV+T +T R++ + + AAEQC +P Sbjct: 63 LFAPIKKTRTDFIVEKAAEMGASRIVPVMTEFTNAGRVQQTRLQAHAVEAAEQCGGTYVP 122 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + L LL WD + QI+F DE E+ L A A P AILIGPEGG+ E Sbjct: 123 EVAEAEKLGRLLDRWDTSRQIMFCDEALAGESG--ALPADAQGP-WAILIGPEGGFSEAE 179 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + LH ++LGPRILR+DTAAVAAM + Q GDW Sbjct: 180 RMRLHGFDHAHAVTLGPRILRADTAAVAAMTMWQQALGDW 219 >gi|254519874|ref|ZP_05131930.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226913623|gb|EEH98824.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 250 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F I + K GD +L VLR+ EGD I+L N E+L+ IS + K + Sbjct: 1 MHKFFTPKENFIDNEAKILGDDVKHLYKVLRLNEGDKIVLNNCDGEEFLASISTITKQEV 60 Query: 66 RFKVEYQSRSQTKQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 ++E + + + S Y K ++D ++QK E+G+ P +T + Sbjct: 61 IVEIEEKLQINNESSVKIYLFQGLPKAQKMDLIVQKGTELGITEFIPTLTDRVDIKLKGD 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ + AA+Q +P + P + + L ++ ++ E + Sbjct: 121 FKKLDRLNRIALEAAKQSKRSIIPNVVDPISFDEALDKMNNLDMVIVPYENAENFGIKTL 180 Query: 181 LH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + I V IL+GPEGG+ +E L ++LG RILR++TA A +L Sbjct: 181 FNHTDLDRTKIKTVGILVGPEGGFEEDEINRLKENGAY-IVTLGSRILRTETAGFVATSL 239 Query: 237 VQAICGD 243 VQ GD Sbjct: 240 VQYELGD 246 >gi|294627316|ref|ZP_06705902.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667456|ref|ZP_06732673.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598398|gb|EFF42549.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602789|gb|EFF46223.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R +VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ LP + P L+ + D + + D E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + + + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LGTLASSIQ-QYIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|254421059|ref|ZP_05034783.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas sp. BAL3] gi|196187236|gb|EDX82212.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas sp. BAL3] Length = 298 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 48/288 (16%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + + RL V PL + DQ YL V+R+K GD +L+FNG+DGEW ++ V Sbjct: 10 KADMIRLHVPSPLAAAAAVAPTLDQSRYLTQVMRLKVGDELLVFNGRDGEWRCTVAEVLK 69 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K + + E Q+R QT D++ I + +K R++ +++K+ E+G +R V+T+ T Sbjct: 70 KGVILRAEEQARPQTYGPDLELIVAVVKKARVETIVEKAAELGARRVRLVLTKRTNADRI 129 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +DR+ AAEQ L +P + P L+ LL W+ +++F DET G ++ L Sbjct: 130 RLDRLDAIAEEAAEQTGRLDVPPVDDPVKLDALLDEWEAGRRLMFCDET-GGAPAMRALA 188 Query: 183 AIAH----------------------------------------------IPNVAILIGP 196 + P +ILIGP Sbjct: 189 PYSPSPLRGGALARSDDGVGRAEQPDALPGPAHPASAAPSPPSPDGEGEGQPKWSILIGP 248 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG+ EE E L SLPF T +SLGPRILR+DTAA+AAM L QA GDW Sbjct: 249 EGGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 296 >gi|309379533|emb|CBX21899.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 241 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|308069954|ref|YP_003871559.1| hypothetical protein PPE_03203 [Paenibacillus polymyxa E681] gi|305859233|gb|ADM71021.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 254 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 15/250 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ ++ +G+ ++A V+R + GD I++ +G E L + + + Sbjct: 1 MQRYFIPAEQFLEDHVIVAGEDARHIAKVMRGRSGDKIIVSDGVSREALVALDTIEQDHV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + T + VQ + K ++++ ++QK E+G P ++ T + Sbjct: 61 TATIIEPLKMTSEPYVQVTIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P I P T + LL ++ I + E + Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEISAPMTWKELLASFAGYDLICYCYEKEQGKQLR 180 Query: 179 EKLHAIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + +A P V +++GPEGG+ E LG RILR++TA +A Sbjct: 181 DVIQPLAEQWASTDMPRVLLVVGPEGGFTEAESLEAEQAG-AQSTGLGRRILRAETAGMA 239 Query: 233 AMALVQAICG 242 A+A + G Sbjct: 240 ALACILYETG 249 >gi|150015721|ref|YP_001307975.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium beijerinckii NCIMB 8052] gi|149902186|gb|ABR33019.1| protein of unknown function DUF558 [Clostridium beijerinckii NCIMB 8052] Length = 255 Score = 247 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 14/250 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F + +T+GK GD ++ VLR+ EG+ ++L N + E+L +I + KS Sbjct: 1 MHKFFTEPHNISETEGKILGDDVKHIYKVLRLSEGEEVVLNNCEGIEYLGEIETITKSEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 ++ + + V K ++D ++QK E+G+ PV T + Sbjct: 61 IVKIIKRLDINNESKVKVHLFQGLPKGQKMDLIVQKGTELGVSEFIPVTTARVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 +DR+ + A +Q +P + + I+ E G + Sbjct: 121 FKKLDRLNRIALEACKQSKRSVIPQVKEVIDFNEAINELKKMDLIIVPYENAEDFGIKTL 180 Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + KL + I NV ILIGPEGG+ E + L ++LG RILR++TA A Sbjct: 181 VRKLERDSVDLDTINNVGILIGPEGGFEESEIDDLKEQGAY-IVTLGNRILRTETAGFTA 239 Query: 234 MALVQAICGD 243 AL+Q GD Sbjct: 240 TALIQYELGD 249 >gi|325135519|gb|EGC58137.1| hypothetical protein TIGR00046 [Neisseria meningitidis M0579] Length = 241 Score = 247 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R + L + + +L +VLR++ +NI LFNGK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFNGKGKAHAARLTVLEKRRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 GAEILHEETADAESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|50085384|ref|YP_046894.1| hypothetical protein ACIAD2284 [Acinetobacter sp. ADP1] gi|49531360|emb|CAG69072.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 243 Score = 247 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + T + +H+ VLR + D + FNG+ GE+ + + K Sbjct: 1 MNRFYIEADLSVNTDTLLTESVFHHWVRVLRAQVNDCAIFFNGQGGEYQVTLQEINKKNA 60 Query: 67 FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 Q +T K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 TVSIDQFNPVDRTPAFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 +D ++ I+A EQC + +P I PP +L + N ++V A E +N Sbjct: 121 RDQKKIDHWQSIAIAACEQCGMNRVPEILPPVSLNEWINTATLPNTKLVLAPEKEQ-QNV 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ + +A+LIGPEGG E ++ F+ +G R+LR++TA V A++++ Sbjct: 180 LKNAQS-----ELALLIGPEGGLSENEIIAANNKGFIN-WCIGERVLRTETAPVVALSIL 233 Query: 238 QAIC 241 Sbjct: 234 NYRF 237 >gi|87121181|ref|ZP_01077072.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121] gi|86163673|gb|EAQ64947.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121] Length = 244 Score = 247 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++VD PL + + ++ VLR+K +++LFNG+ G++ +K+ V K Sbjct: 2 RIPRIYVDLPLQESSVFDLPQASFQHVCKVLRLKNDYSLILFNGQGGQYQAKLINVEKRS 61 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + YQ+ V + + R+DY IQK+VE G+ I+P+ + Sbjct: 62 AQVEVLNYQALENESPIKVTLGQTLSRGERMDYAIQKAVEAGVHRIQPLFSERCEVKLNT 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ISAAEQ +P + P L N +I + + Sbjct: 122 ERLDKKIQHWQQIAISAAEQSGRGHVPEVLSPINLLDWTSNCKDMLKITMHHHSAKPISE 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + V++LIGPEGG E E F P++LG R+LR++TA V + + Sbjct: 182 MSE----PEDKAVSVLIGPEGGLTESEVEASIQHGF-QPVALGSRVLRTETAPVVILTCI 236 Query: 238 QAICGD 243 + GD Sbjct: 237 NLLWGD 242 >gi|78048759|ref|YP_364934.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925762|ref|ZP_08187135.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118] gi|78037189|emb|CAJ24934.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543819|gb|EGD15229.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118] Length = 244 Score = 247 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ LP + P L+ + D + + D E+ Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAVPQGLQDAAQASDAHALRLTLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + +V + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LGTLASSIQ-QHVVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|58426003|gb|AAW75040.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 267 Score = 247 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 25 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 84 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 85 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 144 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + Sbjct: 145 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 204 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L A + ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 205 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 259 Query: 237 VQAICGD 243 +Q+ GD Sbjct: 260 LQSRFGD 266 >gi|299134206|ref|ZP_07027399.1| protein of unknown function DUF558 [Afipia sp. 1NLS2] gi|298590953|gb|EFI51155.1| protein of unknown function DUF558 [Afipia sp. 1NLS2] Length = 255 Score = 247 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 128/229 (55%), Gaps = 1/229 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ RLFVD PL + +Q HYL +VLR+ GD+IL+FNG DGEW ++I Sbjct: 2 MQRDFKSPRLFVDAPLDAGGRVALEREQGHYLGNVLRLGTGDSILVFNGHDGEWRAQIEG 61 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + + Q+R Q D+ +F+P+K RLDYM+QK+VEMG + P +T++TQ + Sbjct: 62 RKRPEHLTLTEQTRPQETPCDLHLLFAPLKHARLDYMVQKAVEMGASLLAPTLTQFTQVS 121 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 N +R+R I AAEQC IL LP I P L L D ++F DE + L Sbjct: 122 RVNTERMRANAIEAAEQCGILNLPGINEPQPLARRLSERDGQRLLIFCDEAAPQCDPLAA 181 Query: 181 L-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + +L+GPEGG+ EE+ L P + LSLGPRILR+DT Sbjct: 182 LGMGAGKTKGLDVLVGPEGGFSEEERALLLRQPRLMRLSLGPRILRADT 230 >gi|119503497|ref|ZP_01625580.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium HTCC2080] gi|119460559|gb|EAW41651.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium HTCC2080] Length = 243 Score = 247 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 16/243 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 RL+ L + + + H+L VLR + GDNI LF G +W +S V K S+ Sbjct: 5 RLYTKQSLESGNKVELEAEVAHHLVKVLRARVGDNITLFTGTGLDWQCCVSEVHKRSVTL 64 Query: 68 KVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNT 120 V S T+ K +R D+ IQK+ E G+ I P+ + Sbjct: 65 SVGGASNPNTESPLKTHLGLCLSKGDRFDWAIQKATEAGVATITPLYSDRVDVKLPADRI 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + SA EQC +P I+ PT L + ++ Sbjct: 125 PKRIAHWQQIVRSACEQCGRAIVPQIFDPTPLSNWAQEQVSEAKLFLHHRESAMLP---- 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + ++A+L+GPEGG ++ F+ + LGPR+LR++TA + A++++ A Sbjct: 181 ---VTRPTSIALLVGPEGGLSETDRGYASDAGFI-GVKLGPRVLRTETAPLVALSILGAR 236 Query: 241 CGD 243 GD Sbjct: 237 WGD 239 >gi|304403938|ref|ZP_07385600.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus YK9] gi|304346916|gb|EFM12748.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus YK9] Length = 254 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 15/250 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R FV +T GD H+ + V+RM+ GD+ ++ +G E ++K + + + Sbjct: 1 MQRYFVPTSQFDETTVTLLGDDAHHASRVMRMRSGDSFIVSDGAGREAIAKATSIAADRI 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 VE + + + S K ++++ +IQK E+G A P + + Sbjct: 61 EADIVEKLAGDREPAWQITIAQSLPKGDKMELIIQKGTEIGAYAFVPFESERMIVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R AAEQ +P I P + + L+ + ++F E G S Sbjct: 121 KEAKRLERWEKIAKEAAEQAHRSRIPAIAKPASWKQLVGSIGEYDLVLFCYEEEGRSGSG 180 Query: 179 EKLH------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L A V +++GPEGG+ E V + LG RILR++TA + Sbjct: 181 SGLRDAVRPIADRSNARVLVVVGPEGGFTESEAADASGAGAV-VVGLGKRILRTETAGLV 239 Query: 233 AMALVQAICG 242 A+ + G Sbjct: 240 ALTALLYESG 249 >gi|163942067|ref|YP_001646951.1| hypothetical protein BcerKBAB4_4162 [Bacillus weihenstephanensis KBAB4] gi|229135136|ref|ZP_04263937.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196] gi|163864264|gb|ABY45323.1| protein of unknown function DUF558 [Bacillus weihenstephanensis KBAB4] gi|228648313|gb|EEL04347.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196] Length = 249 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEW-LSKISY--VG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK E +++I+ V Sbjct: 1 MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +I VE+ S V K ++L+ + QK E+G A P + Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175 + ++R+R AAEQ +P ++ P++ + LL + A E + Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYDVCLVAYEEEAKQG 177 Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 178 EKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236 Query: 233 AMALVQAIC 241 A++ Sbjct: 237 ALSAASYHF 245 >gi|289667429|ref|ZP_06488504.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ +P + P L+ + D + + D E+ Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + ++ + IGPEGG+ ++ L F T L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-ASSVQQHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|228923064|ref|ZP_04086356.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836562|gb|EEM81911.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 249 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTTIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|84623346|ref|YP_450718.1| hypothetical protein XOO_1689 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|229558004|ref|YP_200425.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367286|dbj|BAE68444.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 244 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L A + ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 182 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 236 Query: 237 VQAICGD 243 +Q+ GD Sbjct: 237 LQSRFGD 243 >gi|307730990|ref|YP_003908214.1| hypothetical protein BC1003_2971 [Burkholderia sp. CCGE1003] gi|307585525|gb|ADN58923.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1003] Length = 246 Score = 247 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R FV L + D ++ VLR++ GD+I+LFNG+ GE+ +++ + + I Sbjct: 1 MPRFFVGTSLSPDGVLQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELVTIERRAI 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 KV E++ + +++D++I+K+VE+G + P+ T + + Sbjct: 60 TVKVREFRDIEVEPPYRLSLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCG 173 ++ EQC LP + P + L +I+ + Sbjct: 120 RALRRHTHWEGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRLPAADELRILLSPRAS- 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L A V +L+GPEGG+ + E+ F + LGPR+LR++TA +A Sbjct: 179 --IQFSALPTTAPKGPVTVLVGPEGGFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGIAV 235 Query: 234 MALVQAICGDW 244 ++ + A+ G W Sbjct: 236 LSALAAMWGGW 246 >gi|161869288|ref|YP_001598455.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis 053442] gi|161594841|gb|ABX72501.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 241 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|288939950|ref|YP_003442190.1| hypothetical protein Alvin_0191 [Allochromatium vinosum DSM 180] gi|288895322|gb|ADC61158.1| protein of unknown function DUF558 [Allochromatium vinosum DSM 180] Length = 248 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 11/247 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 L RL VD L + Q + VLR++ ++LFNG ++ + + G+ Sbjct: 2 RLTRLHVDLDLRPGAEIDLPSAQARHAVQVLRLERDAPLVLFNGDGHDYSACLVEPGRDR 61 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 +R VE + + + D+ K R+D+ IQK+VE+G+ I P+ TR Q Sbjct: 62 VRVLVESRGDPELESRLDIHLALGISKGERMDFAIQKAVELGVTRITPLFTRRAQVRLDG 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ + ++A EQ LP + P LE L+ + +E + Sbjct: 122 ARLDKRLEHWQGVVVAACEQSGRRRLPTLEPAGGLEAWLETAHGDGFAGGLLLDPLAERA 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + +LIGPEGG E+E F + LGPRILR++TA +AA+A++ Sbjct: 182 LPALPA--PESGLTLLIGPEGGLDPREREAARRHGF-QGVRLGPRILRTETAPLAAIAVI 238 Query: 238 QAICGDW 244 QA+ GD+ Sbjct: 239 QALWGDF 245 >gi|210610069|ref|ZP_03288248.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787] gi|210152680|gb|EEA83686.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787] Length = 245 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV + G +++ +VLRMK G+ + + +G + ++L +I + Sbjct: 1 MHQFFVTPMQVKEDHIYIEGLDVNHIKNVLRMKVGEALKVSDGNNRKYLCEIESMTAQQV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE Q S + K+++++ ++QK+VE+G I PV T+ + Sbjct: 61 CVRIVEEQQVDTELPSKIYLFQGLPKSDKMELIVQKAVELGAYEIIPVATKRAVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177 ++R R S A+Q +P + + + L ++ E G + + Sbjct: 121 KALKKVERWRGIAESGAKQSGRNVIPKVTNVMSYKDALTYARGLDILLIPYELAEGMKET 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I +V I IGPEGG+ ++E E + ++LG RILR++TA + ++++ Sbjct: 181 KQVIEEIKRGQSVGIFIGPEGGFETQEVEDAIANG-ARAITLGKRILRTETAGLTTLSIL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|261393256|emb|CAX50882.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 241 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPENIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|241759555|ref|ZP_04757658.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114] gi|241320112|gb|EER56473.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114] Length = 241 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +VDF L + + + +L +VLR+K + I+LFNG + + + K Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRCA 59 Query: 67 FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + ++ + + R+D+ +QKSVE+G+ IRPVI+ + Sbjct: 60 SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P T L+ + S N Sbjct: 120 RAEKRVARWQEIVVSACEQSGRNIVPKVLPLMTYAQALQQLPQETAKLLM-----SLNRA 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL + V ++GPEGG+ +E++ F ++LG R+LR++TA++AA+A + Sbjct: 175 QKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIATM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|206969964|ref|ZP_03230918.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134] gi|228954597|ref|ZP_04116621.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071816|ref|ZP_04205030.1| RNA methyltransferase, RsmE [Bacillus cereus F65185] gi|229081573|ref|ZP_04214070.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2] gi|229180588|ref|ZP_04307930.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W] gi|229192522|ref|ZP_04319484.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876] gi|206735652|gb|EDZ52820.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134] gi|228590946|gb|EEK48803.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876] gi|228603012|gb|EEK60491.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W] gi|228701729|gb|EEL54218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2] gi|228711295|gb|EEL63256.1| RNA methyltransferase, RsmE [Bacillus cereus F65185] gi|228805043|gb|EEM51638.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 249 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|167630502|ref|YP_001681001.1| hypothetical protein HM1_2440 [Heliobacterium modesticaldum Ice1] gi|167593242|gb|ABZ84990.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 254 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 17/254 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 + R + + ++ +L+ VLR++ GD +L F+G+ E+ + ++ + K+ Sbjct: 1 MYRFLFEPRNLTGARVCLDREESQHLSKVLRLRAGDAVLAFDGQGNEYEAIVAEINGDKA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + S+ + + K +++ +IQK+ E+G+ I PV+T + Sbjct: 61 FLESLRPTGASREAPIRLWLLQGVAKGEKMELVIQKATELGVEKIFPVLTERSVVRFDAA 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 DR + AA+QC +P + P ++ +WD ++ E + Sbjct: 121 KAKERRDRWQKIAREAAKQCWRTVIPEVQLPAAWAEVITDWDMTMPLLIPWEKEQGKGLK 180 Query: 179 EKLHAIA--------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + L + + + IGPEGG + E T +SLGPRILR++TA Sbjct: 181 QVLTVLKKEGLLHDSPAKVIGLAIGPEGGLTAAEVALARDRGART-VSLGPRILRTETAG 239 Query: 231 VAAMALVQAICGDW 244 +AA+A + GDW Sbjct: 240 IAALAAIMYELGDW 253 >gi|298369579|ref|ZP_06980896.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014 str. F0314] gi|298282136|gb|EFI23624.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014 str. F0314] Length = 241 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + +L HVLR+K + I+LFNG + +++ + K Sbjct: 1 MPRFYLSEVLSAGRAVSLPDNVVRHL-HVLRLKPDEEIVLFNGDGKAYPARLGVLEKRRA 59 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + ++ + + R+D+ +QKSVE+G+G IRPV++ + Sbjct: 60 TAEILREEEADNESPLNITLVQAVSSGERMDFTLQKSVELGVGEIRPVLSERCVVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ T+P + P + + L+ + S + Sbjct: 120 RAAKRVARWQEIVVSACEQSGRNTVPQVLPLVSYQEALRQMPSEKTKLLM-----SVRNA 174 Query: 179 EKLHAIAHIPNVAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL+ I + I +GPEGG+ E++ F ++LGPR+LR++TA++AA+A + Sbjct: 175 QKLNRITPSSDGLIFMVGPEGGWTESEEQQAFGAGF-QAVTLGPRVLRTETASLAAIAAM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|319639002|ref|ZP_07993760.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102] gi|317399906|gb|EFV80569.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102] Length = 241 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKS 64 + R +VDF L + + + +L +VLR+K + I+LFNG + + ++ ++ Sbjct: 1 MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKSYPALPEVLEKRRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ ++ + + R+D+ +QKSVE+G+ IRPVI+ + Sbjct: 60 SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P TT L+ + S N Sbjct: 120 RAEKRVARWQEIVVSACEQSGRNIVPRVLPLTTYAQALRQLPQETAKLLM-----SLNRA 174 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL + V ++GPEGG+ +E++ F ++LG R+LR++TA++AA+A + Sbjct: 175 QKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIAAM 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTLWGDF 240 >gi|332975772|gb|EGK12653.1| RsmE family RNA methyltransferase [Desmospora sp. 8437] Length = 248 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 116/244 (47%), Gaps = 11/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++R F+D + GD H++ +V+RM+ GD ++ + + ++L+++ V + Sbjct: 1 MQRYFIDSTQIGPDRITVRGDDVHHIKNVMRMRAGDRLICCDSRGTDYLAELETVSEGEA 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R ++ + S+ + V S K ++ ++++QK E+G + P I+ T + Sbjct: 61 RCRILERMPSRGEPRFRVAVAASLTKGDKWEWVLQKGTELGAASFLPFISARTVVKWDGK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + AAEQ +P + LL+ + +++FA E G SL Sbjct: 121 KADKKKERWQRIAKEAAEQSHRGQIPHVETVMDWRSLLERFPAFDRVLFAYEKGG--RSL 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + ++IGPEGG+ EK + V+ + LGPRILR++TA +A ++ + Sbjct: 179 GAVLREVTGERMLVVIGPEGGFTETEKSEAVAAGAVS-IHLGPRILRAETAPLALLSCIH 237 Query: 239 AICG 242 G Sbjct: 238 YSYG 241 >gi|308390021|gb|ADO32341.1| hypothetical protein NMBB_2198 [Neisseria meningitidis alpha710] gi|325129462|gb|EGC52292.1| hypothetical protein TIGR00046 [Neisseria meningitidis OX99.30304] Length = 241 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|294787701|ref|ZP_06752945.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC 29453] gi|294483994|gb|EFG31677.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC 29453] Length = 239 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 16/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R + L ++ + ++ HVLR++ G+ I LFNG + +++ + K Sbjct: 1 MPRFYFPVNLIPDSEWTLPDNLVRHI-HVLRLRVGEQITLFNGDGAAYSAQLLQLEKRHA 59 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V ++ T+ ++ + + R+D+ IQKSVE+G+ AI+PV++ + + Sbjct: 60 TCRVLFRQPENTESPLSIKLVQAISSGERMDFTIQKSVELGVVAIQPVMSERSVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + ISA EQC T+P I P + E L+ I+ S Sbjct: 120 RADKRVQRWQEIAISACEQCGRNTIPDILPIVSFEQYLRQKSDELHILM------SLRQA 173 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + V ++IG EGG+ E+ S + LG R+LR++TA++AA+A +Q Sbjct: 174 RSLKDLPTPTRVTLMIGAEGGWTQAEENAAFSAN-CQAVVLGKRVLRTETASLAAIAAMQ 232 Query: 239 AICGDW 244 + GD+ Sbjct: 233 TLWGDF 238 >gi|229129591|ref|ZP_04258560.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4] gi|229152513|ref|ZP_04280704.1| RNA methyltransferase, RsmE [Bacillus cereus m1550] gi|228630944|gb|EEK87582.1| RNA methyltransferase, RsmE [Bacillus cereus m1550] gi|228653859|gb|EEL09728.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4] Length = 249 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDTCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|297529333|ref|YP_003670608.1| hypothetical protein GC56T3_0989 [Geobacillus sp. C56-T3] gi|297252585|gb|ADI26031.1| protein of unknown function DUF558 [Geobacillus sp. C56-T3] Length = 258 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV SGD H++A V+RMK GD I+ + +I + Sbjct: 1 MQRYFVSGQAQQGGIVAISGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHV 60 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 Q + + + K + + +IQK E+G P V+ + Sbjct: 61 QVRIVQWKEERSELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + AAEQ + +P + P + LL +FA E Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTVVPDVRAPLSFVELLAFGQTVDVRLFAYEKEARNARH 180 Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L A + + + GPEGG+ EE E L F +P SLGPRILR++TA + + Sbjct: 181 AALPALLSRLRPGGALLAVFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYEW 246 >gi|229031960|ref|ZP_04187946.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271] gi|228729350|gb|EEL80341.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271] Length = 249 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE TL FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|253997349|ref|YP_003049413.1| hypothetical protein Mmol_1984 [Methylotenera mobilis JLW8] gi|253984028|gb|ACT48886.1| protein of unknown function DUF558 [Methylotenera mobilis JLW8] Length = 244 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 16/246 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R + PL + S + LR+ GD+ +LFNG + ++ + K+ Sbjct: 5 RFYTHSPLALGASVLLSESAAAHATRALRLSVGDDAILFNGDGVNYNCTLTEIKKNSVTA 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + + ++ + + +R+D+ IQK+VE+G+ +I+P+ ++ + + Sbjct: 65 MVNGATAVHNESPLNITLVQAISSGDRMDFTIQKAVELGVKSIQPISSKRSVVKLSGERA 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSL 178 + + ISA EQ +P + P +LE L N N +I+ N + Sbjct: 125 EKRTEHWQNIAISACEQSGRAYVPKVLTPISLEQWLGNNPAANNTRILLNPIGAVRLNEI 184 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 K + +LIG EGG EE + + F + + LGPRILR++TAA+ A+A +Q Sbjct: 185 AK-----PTGEIQLLIGAEGGLSQEEIDLATAHNFQSIV-LGPRILRTETAALTAIAAMQ 238 Query: 239 AICGDW 244 GD+ Sbjct: 239 LAWGDF 244 >gi|218233104|ref|YP_002369120.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus B4264] gi|228960579|ref|ZP_04122227.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051300|ref|ZP_04194818.1| RNA methyltransferase, RsmE [Bacillus cereus AH676] gi|229111784|ref|ZP_04241331.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15] gi|229148158|ref|ZP_04276464.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24] gi|296504805|ref|YP_003666505.1| surface protein [Bacillus thuringiensis BMB171] gi|218161061|gb|ACK61053.1| RNA methyltransferase, RsmE family [Bacillus cereus B4264] gi|228635298|gb|EEK91822.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24] gi|228671658|gb|EEL26955.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15] gi|228722058|gb|EEL73485.1| RNA methyltransferase, RsmE [Bacillus cereus AH676] gi|228799092|gb|EEM46061.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325857|gb|ADH08785.1| surface protein [Bacillus thuringiensis BMB171] Length = 249 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDACLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|332285304|ref|YP_004417215.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7] gi|330429257|gb|AEC20591.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7] Length = 247 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 116/245 (47%), Gaps = 12/245 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R + PL T + H+ VLR+K G +I+LF+G+ G++ + + GK Sbjct: 5 AISRFYCATPLLPNTSIELPAALAHHAVRVLRLKTGSDIILFDGQGGQYTATLEITGKQA 64 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ Y+ + + +++D++++K+VE+G I P+ + + + Sbjct: 65 HARLGGYEPVEAELTGHITLVQGIPSGDKMDWVVEKAVELGASRIVPLAAQRSVLQLSGE 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENS 177 +D R + +A+EQC + + P TL+ + D + I+F + + Sbjct: 125 RLRKRLDHWRRISQAASEQCGRNRIMEVASPLTLQQYIAASDADPASILFCHPGSSRKLA 184 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A ++ +++GPEGG+ EE + +TP+ G R+LR++TA +A +A V Sbjct: 185 QAALEA---GNSLTLVVGPEGGWSDEELALMAKHQ-LTPVGFGARVLRTETAGLALIAAV 240 Query: 238 QAICG 242 + G Sbjct: 241 STLRG 245 >gi|158320271|ref|YP_001512778.1| hypothetical protein Clos_1236 [Alkaliphilus oremlandii OhILAs] gi|158140470|gb|ABW18782.1| protein of unknown function DUF558 [Alkaliphilus oremlandii OhILAs] Length = 256 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 17/253 (6%) Query: 7 LKRLFV--DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FV + + + +++ VLR+KE D + + +G+ E++ I+ + K+ Sbjct: 1 MHRFFVMPNQVNLTSGEIVIHDEDVKHISKVLRLKEKDIVEICDGESKEYICSIASIHKN 60 Query: 65 IRFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + R +Q +V K ++D +IQK+ E+G+ I PV+ T Sbjct: 61 EVVLSIEEERKSTQEASVEVVLYQGVPKGAKMDLIIQKTTELGIKEIIPVMMERTVVQFD 120 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172 ++ ++R + AA+Q +P I+ P + + +++ N + E Sbjct: 121 SPKDEVKKVERWQKIAEEAAKQSKRGMIPKIHLPMSFKDAIEDSRKNALNIMPYENEENR 180 Query: 173 GSENSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 G +N ++ L A I + + IGPEGG+ E + P++LGPRILR++TA Sbjct: 181 GFKNIIKNLSKEDQASIKKIGVWIGPEGGFEESEVVKAIENG-IHPVTLGPRILRTETAG 239 Query: 231 VAAMALVQAICGD 243 ++LV GD Sbjct: 240 FTMLSLVMYELGD 252 >gi|229013531|ref|ZP_04170665.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048] gi|228747768|gb|EEL97637.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048] Length = 249 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEW-LSKISY--VG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK E +++I+ V Sbjct: 1 MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +I VE+ S V K ++L+ + QK E+G A P + Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175 + ++R++ AAEQ +P ++ P++ + LL + A E + Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYDVCLVAYEEEAKQG 177 Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 178 EKSNFAKSLATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236 Query: 233 AMALVQAIC 241 A++ Sbjct: 237 ALSAASYHF 245 >gi|229062009|ref|ZP_04199335.1| RNA methyltransferase, RsmE [Bacillus cereus AH603] gi|229169059|ref|ZP_04296775.1| RNA methyltransferase, RsmE [Bacillus cereus AH621] gi|228614468|gb|EEK71577.1| RNA methyltransferase, RsmE [Bacillus cereus AH621] gi|228717318|gb|EEL68991.1| RNA methyltransferase, RsmE [Bacillus cereus AH603] Length = 249 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEW-LSKISY--VG 62 ++R FV+ +T + GD H++A V+RM GD+I NGK E +++I+ V Sbjct: 1 MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +I VE+ S V K ++L+ + QK E+G A P + Sbjct: 61 TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175 + ++R++ AAEQ +P ++ P++ + LL + A E + Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYDVCLVAYEEEAKQG 177 Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N + L I + I+ GPEGG EE L FV P SLGPRILR++TA + Sbjct: 178 EKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236 Query: 233 AMALVQAIC 241 A++ Sbjct: 237 ALSAASYHF 245 >gi|86139068|ref|ZP_01057639.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193] gi|85824299|gb|EAQ44503.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193] Length = 259 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 127/257 (49%), Gaps = 30/257 (11%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQ 76 +Q HYL V+R + G + LFNG DGEW ++++ GK QS++ Sbjct: 3 AGQSIPLEKEQAHYLFGVMRQRLGGAVALFNGFDGEWQAEVTEAGKRGGTLTCVAQSKTL 62 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 D+ IF+PIK R D++++K+ EMG I PV T YT + DR++ + + AAE Sbjct: 63 QMPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVGTDYTNSERIRQDRLQAHAVEAAE 122 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC------------------------ 172 QC +P + L LL +W Q++F DE Sbjct: 123 QCGGTYVPEVCDLQKLSQLLDHWPDERQLMFCDEAEVGQRRFLEVARGSAGPEGGREAPA 182 Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 G++ S + + AILIGPEGG+ +E++ LH++ +SLGPRILR+D Sbjct: 183 LGGGTGADRSASEPFGKLSLQPWAILIGPEGGFSDKERKRLHAMAQAHVVSLGPRILRAD 242 Query: 228 TAAVAAMALVQAICGDW 244 TAAVAAM L Q GDW Sbjct: 243 TAAVAAMTLWQQTLGDW 259 >gi|323702403|ref|ZP_08114068.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans DSM 574] gi|323532709|gb|EGB22583.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans DSM 574] Length = 246 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 9/244 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD +G +++ VLRM GD + + +G+ + ++I+ + K Sbjct: 1 MARFFVDPQDIKGDTAIITGPDVKHISKVLRMGNGDRLTILDGRGLVFTAEITGMTKDEV 60 Query: 67 FKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + V + K ++++ +IQK E+G+ I P+ + + Sbjct: 61 TCHLLGPEVAPAEPNLKVTLVQGLPKGDKMETIIQKCTELGIYQIIPLAAARSVVRLDGK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + + AA+QC +P + L ++ N V A E ++ Sbjct: 121 KAAERQQRWQRVAMEAAKQCRRPVIPRVQKLCQLTEVISMIPTNALGVIAWEDEKQQSLR 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L + + I IGPEGG+ EE L + ++LGPRILR++TA A+ +V Sbjct: 181 QLLQGVTMPEEIYIFIGPEGGFDPEEVARLSQRGWPN-VTLGPRILRTETAGPTALTMVL 239 Query: 239 AICG 242 G Sbjct: 240 YHYG 243 >gi|228910148|ref|ZP_04073967.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200] gi|228849431|gb|EEM94266.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200] Length = 249 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPDQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|311108286|ref|YP_003981139.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310762975|gb|ADP18424.1| RNA methyltransferase family protein [Achromobacter xylosoxidans A8] Length = 243 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 106/230 (46%), Gaps = 10/230 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D PL + H+ VLR++ G+ + LFNG+ GE+ + + GK+ Sbjct: 4 PRFFCDIPLTAGARVALPDALAHHALRVLRLRAGEAVALFNGQGGEYPATLEVDGKAGFA 63 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 ++ ++ R + + +++D++++K+VE+G + P+ + + Sbjct: 64 QLGQFLPREAELAGRITLVQGLPSGDKMDWVVEKAVELGAARVCPIAAQRSVLQLSGPRL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + SA+EQC L + P TL L+ +++ E S++ Sbjct: 124 DKRVAHWQRIAQSASEQCGRNRLMAVDAPFTLADWLQQPADGLRLMCHPEA--SDDLAGA 181 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 L A+ ++ + +L+GPEGG+ +E V + GPR+LR++TA Sbjct: 182 LRAVPNLQALTLLVGPEGGWSDKELAQAREAG-VQAVRFGPRVLRTETAG 230 >gi|331091342|ref|ZP_08340182.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404503|gb|EGG84047.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium 2_1_46FAA] Length = 245 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64 + FV + G +++ +VLRMK+G+ + + +G + +++ +I K Sbjct: 1 MHHFFVTPNQVSGEEIYIEGSDVNHICNVLRMKKGEKLQISDGNNKKYICRIEDMTAEKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 + VE + S + K++++++++QK+VE+G I PV T+ Sbjct: 61 LLQIVEEKLGDTELSSKIYLFQGLPKSDKMEWIVQKAVELGAYEIIPVSTKRAVVKLDAK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 ++R + A+Q +P + T L + + +V + G + + Sbjct: 121 KAAKKVERWNSIAEGGAKQSGRTVIPKVREVMTYREALAYAETLDIVLVPYELAEGMDKT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + I +V I IGPEGG+ EE E + P++LG RILR++TA + ++++ Sbjct: 181 KEFIGQIEKGQSVGIFIGPEGGFEKEEVEQAMEMG-AEPITLGKRILRTETAGLTVLSIL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|319787981|ref|YP_004147456.1| hypothetical protein Psesu_2392 [Pseudoxanthomonas suwonensis 11-1] gi|317466493|gb|ADV28225.1| protein of unknown function DUF558 [Pseudoxanthomonas suwonensis 11-1] Length = 243 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V+ PL + ++L VLR++EG++ +LFNG ++ ++++ V K Sbjct: 2 RLTRCHVELPLQPGSTITLPEHAANHLVRVLRLREGESCVLFNGDGHDYAARLASVTKRE 61 Query: 66 R--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + + + ++D ++QK+ E+G+ AI PV T Sbjct: 62 VSAEVLSATAVDNESPLRIVLLQGIARGEKMDLILQKATELGVAAIVPVNGERTEVRLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R+ SA EQ +P + PP +LE + + D E+ Sbjct: 122 ERAQKRLAHWRSVVESACEQSGRARVPEVQPPASLETAAATLPGDALRLLLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + A V + IGPEGG+ +++ L + F + L LGPR+LR++TA +AA+A + Sbjct: 180 LASMQPDAST--VVVAIGPEGGWSPRDRQALQAAGF-SGLRLGPRVLRTETAGLAAIAAL 236 Query: 238 QAICGD 243 QA GD Sbjct: 237 QARFGD 242 >gi|166712896|ref|ZP_02244103.1| hypothetical protein Xoryp_15990 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 244 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + S + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCEQEVALSEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L A + ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 182 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 236 Query: 237 VQAICGD 243 +Q+ GD Sbjct: 237 LQSRFGD 243 >gi|229198439|ref|ZP_04325143.1| RNA methyltransferase, RsmE [Bacillus cereus m1293] gi|228584942|gb|EEK43056.1| RNA methyltransferase, RsmE [Bacillus cereus m1293] Length = 249 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 HTAIVEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|217961801|ref|YP_002340371.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus AH187] gi|228987562|ref|ZP_04147680.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141049|ref|ZP_04269591.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26] gi|217064535|gb|ACJ78785.1| RNA methyltransferase, RsmE family [Bacillus cereus AH187] gi|228642327|gb|EEK98616.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26] gi|228772160|gb|EEM20608.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 249 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|304321780|ref|YP_003855423.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis HTCC2503] gi|303300682|gb|ADM10281.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis HTCC2503] Length = 262 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 90/258 (34%), Positives = 132/258 (51%), Gaps = 24/258 (9%) Query: 8 KRLFV--DFPL--CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 RLFV D L G Q+HYL HVLR+ + +LLF+G+ GEW + I+ K Sbjct: 6 PRLFVGGDAALTLAPDRVIPIEGAQWHYLHHVLRLDQNAPVLLFDGRSGEWAAAITIASK 65 Query: 64 SI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120 VE Q+R T S + F+P+K + + +IQK E+G+ RPV T T Sbjct: 66 KHGVLTVERQTRPMTPPSPLTLYFAPLKKDPTELIIQKGTELGITDFRPVRTDRTIVPKA 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--------- 171 DR+ + + AAEQC+ L P I+P +L+ L+ +V+ DE Sbjct: 126 GLKDDRLASIAVEAAEQCERLDTPTIHPLISLQDLIAAPPSC--LVYCDEAGDDPSARWG 183 Query: 172 ------CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 G+ +L A+LIGPEGG+ E++TL +LP +SLGPR+LR Sbjct: 184 GPSGHGEGAAAALLTRQESLAGSPGALLIGPEGGFTPTERQTLRALPGTLAVSLGPRVLR 243 Query: 226 SDTAAVAAMALVQAICGD 243 ++TAA+ A++L QA+ GD Sbjct: 244 AETAALVAISLWQAVLGD 261 >gi|319651611|ref|ZP_08005738.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2] gi|317396678|gb|EFV77389.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2] Length = 249 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + + G+ H++ V+RMKEGD I+ + L I+ + Sbjct: 1 MQRYFTENA-VKENVFLIKGEDRHHIVKVMRMKEGDQIICVDQSQNSALCAIAEITDEHV 59 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 V++ S +++ + K ++L+++IQK E+G P V+ + Sbjct: 60 AAEVVQWIEGSSELPANITIVSGLPKGDKLEWIIQKGTELGAHRFIPFTSARSVVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSEN 176 + +R + AAEQ +P ++ P L+ LLK I F +E E+ Sbjct: 120 KSVKKAERWQKIAKEAAEQSHRTMVPEVFAPLDLKSLLKLSGDYSYKLIAFEEEAKQGED 179 Query: 177 SL--EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 S+ + L ++ ++ ++ GPEGG E L FV LGPRILR++TA + + Sbjct: 180 SVLYKTLTSMNKGQSLMVVFGPEGGLSDNEVSLLQEAGFV-ACGLGPRILRTETAPLYLL 238 Query: 235 ALVQAIC 241 + V Sbjct: 239 SAVSYHF 245 >gi|296333298|ref|ZP_06875751.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675197|ref|YP_003866869.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii str. W23] gi|296149496|gb|EFG90392.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413441|gb|ADM38560.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii str. W23] Length = 256 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ + +G+ H++ +V+RM EGD I+ + E ++ V K Sbjct: 1 MQRYFIELTKQQMEEAPAFSVTGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60 Query: 64 SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 VE+ ++ V K ++L+++IQK E+G A P + Sbjct: 61 DNVSCLVVEWTDENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + + + LL+ + V A E + Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEVPQVMDVHSFQQLLQRMQDFDKCVVAYEESSKK 180 Query: 176 NSLEKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + A + ++ I+ GPEGG E E L P LGPRILR++TA + Sbjct: 181 GEISAFSAVVRRLPKGSSLLIVFGPEGGLTEAEVERLTEKD-SMPCGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ + Sbjct: 240 YALSAISY 247 >gi|300118699|ref|ZP_07056427.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1] gi|298723948|gb|EFI64662.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1] Length = 249 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S + K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|229157925|ref|ZP_04285998.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342] gi|228625533|gb|EEK82287.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342] Length = 249 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|42783438|ref|NP_980685.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus ATCC 10987] gi|42739367|gb|AAS43293.1| conserved hypothetical protein TIGR00046 [Bacillus cereus ATCC 10987] Length = 249 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|261418481|ref|YP_003252163.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. Y412MC61] gi|319767558|ref|YP_004133059.1| hypothetical protein GYMC52_2535 [Geobacillus sp. Y412MC52] gi|261374938|gb|ACX77681.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC61] gi|317112424|gb|ADU94916.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC52] Length = 258 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV SGD H++A V+RMK GD I+ + +I + Sbjct: 1 MQRYFVSGQAQQGGIVAISGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHV 60 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 Q + + + K + + +IQK E+G P V+ + Sbjct: 61 QARIVQWKEERSELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + AAEQ + +P + P + LL +FA E Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARH 180 Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L A + + + GPEGG+ EE E L F +P SLGPRILR++TA + + Sbjct: 181 AALPALLSRLRPGGALLAVFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYEW 246 >gi|229019535|ref|ZP_04176352.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273] gi|229025777|ref|ZP_04182176.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272] gi|228735485|gb|EEL86081.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272] gi|228741791|gb|EEL91974.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273] Length = 249 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65 ++R FV+ +T+ + GD H++ V+RM GD+I NGK E I+ + Sbjct: 1 MQRYFVEEKHVSETKIRIVGDDVHHIGRVMRMSAGDHIYCCVNGKTAE--CSIAEITSEF 58 Query: 66 R--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 VE+ S V K ++L+ + QK E+G A P + Sbjct: 59 VDTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDA 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-- 175 + ++R++ AAEQ +P ++ P + + LL + + A E + Sbjct: 119 KKADKKVERLKKIVKEAAEQSHRSEIPEVHAPASFKQLLAMSNEYDVCLVAYEEEAKQGE 178 Query: 176 --NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 N + L I + I+ GPEGG EE L FV P SLGPRILR++TA + A Sbjct: 179 KSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYA 237 Query: 234 MALVQAIC 241 ++ Sbjct: 238 LSAASYHF 245 >gi|313905332|ref|ZP_07838698.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6] gi|313469802|gb|EFR65138.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6] Length = 246 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F I + +GD +++ +VLRMK+G+ IL+ G + E+ IS + + Sbjct: 1 MYRFFTGREQIIDGKVHITGDDVNHIRNVLRMKKGETILISCGDEWEYTCSISELSEDEI 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + Q + +S + K+++++ +IQK+VE+G + PV ++ + Sbjct: 61 LADVTDAQKPGKELRSKIYLFQCLPKSDKMETVIQKAVELGAFEVVPVSSKRCIVKLDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 + R SAA+Q + +P ++ L+ + +++ + G + Sbjct: 121 RGKQKVARWNGIAESAAKQAKRMIIPTVHEILGFREALEMAKEMDVKLIPYEMESGMSRT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E +I ++A+LIGPEGG+ E E F + ++LG RILR++TA + ++++ Sbjct: 181 REIFSSIEPGQSIAVLIGPEGGFDEAEVELAKEAGF-SSITLGRRILRTETAGMTTLSIL 239 Query: 238 QAIC 241 + Sbjct: 240 MYLL 243 >gi|254521669|ref|ZP_05133724.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] gi|219719260|gb|EED37785.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14] Length = 245 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R +D L + ++L V+R++EGD +LFNG ++ + ++ GK Sbjct: 2 RVTRCPIDLALYSGQTLTLPEETANHLVRVMRLREGDACVLFNGDGHDYSATLTVAGKRE 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 ++ +++ R + + + + ++D ++QK+ E+G+ AI PV T+ Sbjct: 62 VQVRIDAVERVDNESPLAITLLQGIARGEKMDLILQKATELGVAAIIPVNAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + SA Q +P + P +L + + D + Sbjct: 122 ARAEKRVAHWNNVVTSACGQSGRARIPQVGSPLSLAQAAATLPADTLRLTLD--PQGAHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + I IGPEGG+ +++ L + F L LGPRILR++TA +AA+A + Sbjct: 180 LSTLDG-APTGGIVIAIGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 QA GD Sbjct: 238 QARLGD 243 >gi|229324846|ref|YP_496229.2| hypothetical protein Saro_0950 [Novosphingobium aromaticivorans DSM 12444] Length = 249 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 4/239 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV+ PL + G Q HYL V+R+ GD ++L + GEW+S+++ VGK + Sbjct: 13 PRLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLV 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++E ++R + + D + +K D +++K+ E+G + PV+TR N +R Sbjct: 73 LEIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 RT + AAEQC LP + L+ LL++W + FADE G + H Sbjct: 133 ARTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGGIPAAAAF---SLH 189 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 A+L+GPEGG+ E+ + + P ++LGPRILR +TA++A M L + GDW+ Sbjct: 190 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 248 >gi|218132834|ref|ZP_03461638.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC 43243] gi|217991707|gb|EEC57711.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC 43243] Length = 245 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + F G ++L +VLR+K G+ I+L +G + ++ IS + Sbjct: 1 MYHFFARQENIYDDHILIDGADVNHLKNVLRIKCGEKIILSSGDNVDYYCTISEINDDSV 60 Query: 67 FKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 E +R + S + K ++++ +IQK+VE+G I PV + ++ Sbjct: 61 IASIDETDTRGRELPSRIYLFQGLPKGDKMELIIQKAVELGAYGIIPVAMKRSVMKLDSK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177 + R + SAA+Q +P ++ T + ++ E G + + Sbjct: 121 KAESKVKRWNAISESAAKQSKRSIIPAVHDVMTFAQAAEYAKTLDMVLLPYECADGMQAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +KL +I ++ I IGPEGG+ E H F ++LG RILR++TA + ++++ Sbjct: 181 KDKLSSIKPGSSIGIFIGPEGGFDGSELTIAHDAGF-DVITLGRRILRTETAGMMLLSVL 239 Query: 238 QAICGD 243 D Sbjct: 240 MYQLED 245 >gi|328957459|ref|YP_004374845.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp. 17-4] gi|328673783|gb|AEB29829.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp. 17-4] Length = 253 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 15/249 (6%) Query: 7 LKRLFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F+ L SGD +H++ V+RMK + L ++++I+ + + Sbjct: 1 MQRYFLKEDLTDYKNQTISISGDAFHHMVKVMRMKVDHRVYLVTKGQKAFIARINAIEEK 60 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 VE R Q +V K ++LD +IQK E+G A P + Sbjct: 61 EVQLNWVEDDLRQQELPIEVTIASGLPKGDKLDLIIQKGTELGASAFIPFAGSFSITKWD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-- 174 T+ ++R++ AAEQ +P I ++++ L++ + + A E Sbjct: 121 TKKAVKKIERLQKIAQEAAEQSHRTKIPTIESLSSVKQLVEMKGNFDVCLVAYEESAKAG 180 Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +N ++ L + + I+ GPEGG EE + F+ P +LGPRILR++TA + Sbjct: 181 EDQNFVKGLKQVPVGGKLLIIFGPEGGLSKEEVDAFLQNGFL-PCALGPRILRTETAPLY 239 Query: 233 AMALVQAIC 241 A+A Sbjct: 240 ALAATSYHF 248 >gi|218767503|ref|YP_002342015.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis Z2491] gi|121051511|emb|CAM07805.1| hypothetical protein NMA0528 [Neisseria meningitidis Z2491] gi|319409765|emb|CBY90071.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 241 Score = 245 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F T ++LG RILR++T A+AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFDAGFQT-VTLGKRILRTETVALAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|324328215|gb|ADY23475.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 249 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 HTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSHEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|158521743|ref|YP_001529613.1| hypothetical protein Dole_1732 [Desulfococcus oleovorans Hxd3] gi|158510569|gb|ABW67536.1| protein of unknown function DUF558 [Desulfococcus oleovorans Hxd3] Length = 245 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D +G +++ +VLRMK GD I LFNG E+ I V S Sbjct: 1 MRRFFIDAAAAAGAICPITGPDANHIKNVLRMKPGDAIWLFNGAGMEFKGVIHSVD-SEA 59 Query: 67 FKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 VE S + + + +K ++D +++++ E+G+ PV T+ T Sbjct: 60 VTVEITGAFSCATESPIRLTLAQAFLKDKKMDALVRQATELGVTRWIPVFTQRTIPRPDA 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + M+R + + +QC LP I PP E LL D + +I+FAD N Sbjct: 120 RRVSSRMERWQAIAAESLKQCGRGRLPEIEPPILFEDLLSRSDDWSLKIIFADAKAPGLN 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A + V ++IGPEGG+ EE + F+ SLGPRIL++DTA V A A+ Sbjct: 180 DTLP-SQEATVRRVLVMIGPEGGFTPEEIDRAIKKGFIAA-SLGPRILKADTATVGACAI 237 Query: 237 VQAICGD 243 VQ + GD Sbjct: 238 VQHLLGD 244 >gi|323704198|ref|ZP_08115777.1| protein of unknown function DUF558 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536264|gb|EGB26036.1| protein of unknown function DUF558 [Thermoanaerobacterium xylanolyticum LX-11] Length = 248 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 10/248 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S ++RLF+ + GD H++ VLR++ G ++++ NG ++ + I + Sbjct: 1 MSAVRRLFIKDEDIKDGIVRIYGDDAHHIKDVLRLRIGTDLVVSNGV-KQYNASILSIES 59 Query: 64 SIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 + V+ + +V K++++D ++QK E+G+ I PV T ++ Sbjct: 60 TSVLLKIVDELHQVVESSINVTLFQGLPKSDKMDLIVQKCTEIGIKKIVPVETEFSIIKV 119 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++ ++R + A++Q L +P + P + + + V E + Sbjct: 120 KEKSIGNKINRWNKISQEASKQSGRLIVPEVLEPISFTIAVNYINEFDLCVMPYERETNV 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L N+ I IGPEGG+ E +T V ++LGPRILR++TA + A + Sbjct: 180 RLKDVLKENNGAKNICIFIGPEGGFSHSEVDTATKNGAV-IVTLGPRILRTETAGIVAGS 238 Query: 236 LVQAICGD 243 ++ GD Sbjct: 239 IILYELGD 246 >gi|238924264|ref|YP_002937780.1| hypothetical protein EUBREC_1902 [Eubacterium rectale ATCC 33656] gi|238875939|gb|ACR75646.1| protein of unknown function DUF558 [Eubacterium rectale ATCC 33656] Length = 246 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 9/240 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + + FV+ +G +++ +VLRMK G+ I + + + IS V + Sbjct: 1 MYQFFVEEEQVHSDSISITGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSVLDDEV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQ 118 ++ + T+ + K ++++ +IQK+VE+G+ I PV + + Sbjct: 61 IAAIDSADETGTELDNHIVLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177 + R + SAA+Q +P + P T + LK + + +V + G + + Sbjct: 121 KAAKKLQRWQAIAESAAKQSKRTVIPTVKQPVTYKEALKIASELDSTLVPYENERGMDAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + + + +++GPEGG+ EE + + +SLG RILR++TA +AA+A++ Sbjct: 181 REIMGQLKAGQTIGVVVGPEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240 >gi|325914126|ref|ZP_08176479.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937] gi|325539629|gb|EGD11272.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937] Length = 244 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLRCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRE 61 Query: 66 RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + ++ S + + + ++D ++QK+ E+G+ AI PV T+ Sbjct: 62 ARALIERADMLSNESPLRITLLQGIARGEKMDLILQKATELGVTAIVPVNAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R +SA EQ +P + P L+ + D + + D E+ Sbjct: 122 ARMEKRVAHWRNVVVSACEQSGRARVPTVAAPLGLQEAAQTSDPQVRRLTLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + + IGPEGG+ ++ TL F T L LGPRILR++TA +AA+A + Sbjct: 180 LSTLRADVE-QGLIVAIGPEGGWSPRDRATLADAGF-TGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 QA GD Sbjct: 238 QARFGD 243 >gi|289664251|ref|ZP_06485832.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 244 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLIRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 T + R+ +SA EQ +P + P L+ + D + + D E+ Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLD--PQGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A + ++ + IGPEGG+ ++ L F T L LGPRILR++TA +AA+A + Sbjct: 180 LGTL-ASSVQQHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|262372152|ref|ZP_06065431.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262312177|gb|EEY93262.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 239 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 15/243 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +++ L + + +H+ VLR K + + FNGK GE+ ++ + K Sbjct: 1 MNRFYIETELNTGNTIELTESVFHHWVRVLRAKVQEKAIFFNGKGGEYRVTLTEINKKNA 60 Query: 67 FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 F + +T V K +R+DY IQK+ E+G+ I+ + + + Sbjct: 61 FVSVDHFEAIDRTAPFKVILGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +D ++ ++A EQC + +P + P ++E ++ + V A L Sbjct: 121 RDQKKLDHWQSVAVAACEQCGMNIVPKVLAPISIEEWIQTDLPISRFVMAPNKDQKNVLL 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + P +A+LIGPEGG E + FV +G R+LR++TA V A++++ Sbjct: 181 DA------QPELALLIGPEGGLSESEIRLSNQHGFVN-WCIGDRVLRTETAPVVALSILN 233 Query: 239 AIC 241 Sbjct: 234 YHF 236 >gi|322383638|ref|ZP_08057389.1| 16S ribosomal RNA methyltransferase RsmE-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151850|gb|EFX44793.1| 16S ribosomal RNA methyltransferase RsmE-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 255 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 16/251 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ T + GD H+L V+R + G+ I++ +G E L++I+ V K++ Sbjct: 1 MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R T + +Q + K ++++ +IQK E+G P ++ T + Sbjct: 61 TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + AAEQ +P + + + +L+ E S Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVVEGVHSWKQILEQAARMDAAWICYEKEDSLQIR 180 Query: 179 EKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + L + + +++GPEGG+ +E E + LG RILR++TAA+ Sbjct: 181 DALFQADALKRNDDKPVRIMLIVGPEGGFTEKEIEQAEESG-CLSIGLGTRILRTETAAM 239 Query: 232 AAMALVQAICG 242 + + G Sbjct: 240 VGLTCILYETG 250 >gi|229358034|ref|YP_001914280.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv. oryzae PXO99A] Length = 244 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V PL + + ++L VLR+++GD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R VE + S + + + ++D ++QK+ E+G+ AI PVI T+ Sbjct: 62 ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 T + R+ +SA EQ LP + P L+ + D H ++ + Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L A + ++ + IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A Sbjct: 182 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 236 Query: 237 VQAICGD 243 +Q+ GD Sbjct: 237 LQSRFGD 243 >gi|301055803|ref|YP_003794014.1| RNA methyltransferase [Bacillus anthracis CI] gi|300377972|gb|ADK06876.1| RNA methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 249 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVDETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|206978414|ref|ZP_03239283.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97] gi|206743370|gb|EDZ54808.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97] Length = 249 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVETSSELSVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|295092115|emb|CBK78222.1| RNA methyltransferase, RsmE family [Clostridium cf. saccharolyticum K10] Length = 247 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + FVD +G +++ +VLRMK G+ +L+ NG+D ++L ++S + + Sbjct: 1 MYHFFVDRSQIHPEHITITGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEV 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ + T+ + V K ++++ +IQK+VE+G I PV +R + Sbjct: 61 EAEIIREKEETTELPARVCLFQGLPKGDKMELIIQKAVELGAYQIIPVASRRAVVKLDKK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + SAA+Q +P I P L + + + G E Sbjct: 121 KEEAKLRRWNAISESAAKQSKRRIIPQIAPVMEFREALSAVSGFDLACIPYECESGMEAV 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +A+ IGPEGG+ E E V P+SLG RILR++TA + ++++ Sbjct: 181 RKFVGQADAGQRIAVFIGPEGGFEEAEVEAAVQAG-VVPVSLGKRILRTETAGLCMLSVL 239 Query: 238 QAIC 241 Sbjct: 240 AFKL 243 >gi|49187206|ref|YP_030458.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Sterne] gi|49481319|ref|YP_038366.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321684|ref|ZP_00394643.1| COG1385: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] gi|165872033|ref|ZP_02216673.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. A0488] gi|167634645|ref|ZP_02392965.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442] gi|167638597|ref|ZP_02396873.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193] gi|170687378|ref|ZP_02878595.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465] gi|170707490|ref|ZP_02897944.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389] gi|177653268|ref|ZP_02935520.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174] gi|190566983|ref|ZP_03019899.1| RNA methyltransferase, RsmE family [Bacillus anthracis Tsiankovskii-I] gi|196034476|ref|ZP_03101885.1| RNA methyltransferase, RsmE family [Bacillus cereus W] gi|196039365|ref|ZP_03106671.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99] gi|218905448|ref|YP_002453282.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820] gi|227817087|ref|YP_002817096.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC 684] gi|228916943|ref|ZP_04080504.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935631|ref|ZP_04098445.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948024|ref|ZP_04110309.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229077351|ref|NP_846759.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Ames] gi|229093381|ref|ZP_04224486.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42] gi|229123850|ref|ZP_04253043.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201] gi|229220844|ref|YP_021182.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. 'Ames Ancestor'] gi|229600789|ref|YP_002868600.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248] gi|254684068|ref|ZP_05147928.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. CNEVA-9066] gi|254721902|ref|ZP_05183691.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. A1055] gi|254736416|ref|ZP_05194122.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Western North America USA6153] gi|254741454|ref|ZP_05199141.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Kruger B] gi|254750892|ref|ZP_05202931.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Vollum] gi|254757780|ref|ZP_05209807.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str. Australia 94] gi|49181133|gb|AAT56509.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. Sterne] gi|49332875|gb|AAT63521.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712164|gb|EDR17701.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. A0488] gi|167513445|gb|EDR88815.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193] gi|167530097|gb|EDR92832.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442] gi|170127734|gb|EDS96607.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389] gi|170668573|gb|EDT19319.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465] gi|172081550|gb|EDT66622.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174] gi|190561974|gb|EDV15943.1| RNA methyltransferase, RsmE family [Bacillus anthracis Tsiankovskii-I] gi|195993018|gb|EDX56977.1| RNA methyltransferase, RsmE family [Bacillus cereus W] gi|196029992|gb|EDX68593.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99] gi|218534944|gb|ACK87342.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820] gi|227006628|gb|ACP16371.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC 684] gi|228659564|gb|EEL15211.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201] gi|228689975|gb|EEL43778.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42] gi|228811610|gb|EEM57946.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823991|gb|EEM69809.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842664|gb|EEM87751.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265197|gb|ACQ46834.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248] gi|269850267|gb|AAP28245.2| RNA methyltransferase, RsmE family [Bacillus anthracis str. Ames] Length = 249 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|302874303|ref|YP_003842936.1| hypothetical protein Clocel_1419 [Clostridium cellulovorans 743B] gi|307689431|ref|ZP_07631877.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium cellulovorans 743B] gi|302577160|gb|ADL51172.1| protein of unknown function DUF558 [Clostridium cellulovorans 743B] Length = 248 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 8/244 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV+ + G+ ++ VLR+K GD + + + E+ +K++ + K Sbjct: 1 MHKFFVEPSEIAEGIVTIEGEDVKHIYKVLRLKVGDIVNINDCNGTEYNAKLTSIDKKEV 60 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTH 121 +E + + K ++DY++QK E+G+ A PV T + Sbjct: 61 KAEIIETLDSNNESPIKIVLYQGMPKATKMDYIVQKGTEVGINAFIPVNTERVVVNTSEF 120 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLE 179 +DR+ AA+Q +P ++ P E LLK + IV E +L Sbjct: 121 KKLDRLNRIAKEAAKQSKRTIIPKVHEPIEFEELLKELEEYSLIVVPYENAENFGIKNLA 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K + +VAI+IGPEGG+ E E L S+ ++LGPRILR++TA V +L+ Sbjct: 181 KGVKKEEVDSVAIIIGPEGGFEDSEIERLKSIN-AHIVTLGPRILRTETAGVVCASLIMY 239 Query: 240 ICGD 243 GD Sbjct: 240 ELGD 243 >gi|154248025|ref|YP_001418983.1| 16S ribosomal RNA methyltransferase RsmE [Xanthobacter autotrophicus Py2] gi|154162110|gb|ABS69326.1| protein of unknown function DUF558 [Xanthobacter autotrophicus Py2] Length = 242 Score = 244 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 4/225 (1%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +RL+VD L + +Q HY+A+V+R+ G ++LLFNG+DGEW + +++ + Sbjct: 6 FRAQRLYVDAELGPDASVLLAPEQAHYVANVIRLAVGQDLLLFNGRDGEWRATRVAGGKR 65 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 +RF+V Q R Q + ++Y F+P+K RLDYM+QK+VEMG G + PVITRYTQ + N Sbjct: 66 DVRFEVSAQVRPQPEAPTLEYAFAPLKHARLDYMVQKAVEMGAGVLSPVITRYTQVSRIN 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +DR+ + AAEQC IL+LP + P L L +VF DE + + L Sbjct: 126 LDRMAANAVEAAEQCGILSLPHVAEPRPLAQWLDALPAERVLVFCDEAAADHDPIHALRT 185 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P V++LIGPEGG+ +E+ + P LSLGPRILR+DT Sbjct: 186 APSGP-VSVLIGPEGGFSPDERALI--APRAVTLSLGPRILRADT 227 >gi|87134653|gb|ABD25395.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 258 Score = 244 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 4/239 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV+ PL + G Q HYL V+R+ GD ++L + GEW+S+++ VGK + Sbjct: 22 PRLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLV 81 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++E ++R + + D + +K D +++K+ E+G + PV+TR N +R Sbjct: 82 LEIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPER 141 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 RT + AAEQC LP + L+ LL++W + FADE G + H Sbjct: 142 ARTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGGIPAAAAF---SLH 198 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 A+L+GPEGG+ E+ + + P ++LGPRILR +TA++A M L + GDW+ Sbjct: 199 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 257 >gi|217969920|ref|YP_002355154.1| 16S ribosomal RNA methyltransferase RsmE [Thauera sp. MZ1T] gi|217507247|gb|ACK54258.1| protein of unknown function DUF558 [Thauera sp. MZ1T] Length = 246 Score = 244 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 9/246 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R L + H+ VLR+++G+ ++LF+G GE ++++ GK++ Sbjct: 2 ISRFHFPDRLPAGGEVALPEALAHHALRVLRLRDGEAVVLFDGSGGEVDARLAVRGKAVF 61 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ E ++ + + + + +++D+++QK+VE+G+ AI+PV + + Sbjct: 62 ARLGEARAVERESPLRIVLVQALASGDKMDWVVQKAVELGVHAIQPVQAERSVLRLAAER 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + I+A EQC +P I P L L V A + + Sbjct: 122 ADKRVAHWQQVAIAACEQCGRNRVPEIRPLQPLAHWLGAHRAAPGYVLAPGYVLAPGGAK 181 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + V +L+GPEGG+ E + + LGPR+LR++TA +AA+A +Q Sbjct: 182 GFADEPEPKDEVHLLVGPEGGWSEGEMAAFDAAG-CRRVRLGPRVLRTETAGLAAVAALQ 240 Query: 239 AICGDW 244 A GD+ Sbjct: 241 ARWGDY 246 >gi|283796176|ref|ZP_06345329.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1] gi|291076395|gb|EFE13759.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1] gi|295115547|emb|CBL36394.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium SM4/1] Length = 247 Score = 244 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + FVD +G +++ +VLRMK G+ +L+ NG+D ++L ++S + + Sbjct: 1 MYHFFVDRSQIHPEHITITGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEV 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ + T+ + V K ++++ +IQK+VE+G I PV ++ + Sbjct: 61 EAEIIREKEETTELPARVCLFQGLPKGDKMELIIQKAVELGAYQIIPVASKRAVVKLDKK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + SAA+Q +P I P L + + + G E Sbjct: 121 KEEAKLRRWNAISESAAKQSKRRIIPQIAPVMEFREALSAVSGFDLACIPYECESGMEAV 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +A+ IGPEGG+ E E V P+SLG RILR++TA + ++++ Sbjct: 181 RKFVGQADAGQRIAVFIGPEGGFEEAEVEAAVQAG-VVPVSLGKRILRTETAGLCMLSVL 239 Query: 238 QAIC 241 Sbjct: 240 AFKL 243 >gi|217979033|ref|YP_002363180.1| protein of unknown function DUF558 [Methylocella silvestris BL2] gi|217504409|gb|ACK51818.1| protein of unknown function DUF558 [Methylocella silvestris BL2] Length = 253 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 4/231 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RL+VD PL + + Q +YL + LR+K+G IL FNG+DGEW ++I Sbjct: 3 RYDFASPRLYVDAPLAPQARVSLEAPQVNYLRNALRLKDGAEILAFNGRDGEWRARIETE 62 Query: 62 GK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G+ S + Q R Q D+ Y+F+P+K RLDYM+QK+VEMG G +RPV+TR TQ Sbjct: 63 GRRSTVLAADQQLRPQPPPFDLHYLFAPLKHARLDYMVQKAVEMGAGQLRPVLTRRTQAE 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 N+DR+R I AAEQC +L++ I P L+ L W + +VF DE ++ + Sbjct: 123 RINLDRMRANAIEAAEQCGVLSVAEIIAPIRLDAALAQWSPDRLLVFCDEDAPEQDPVAA 182 Query: 181 LHAIA---HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +A+LIGPEGG+ +E++ L + P LSLGPR+LR+DT Sbjct: 183 LRAARESNPGGGLAVLIGPEGGFDEDERKALLAAPRTVRLSLGPRVLRADT 233 >gi|163758378|ref|ZP_02165466.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43] gi|162284667|gb|EDQ34950.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43] Length = 250 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + L+RL++D PL + + +Q HYL VLRM E +L+FNG+DGE+LS + Sbjct: 7 MRANFKLQRLYLDAPLVPRQRAAMRKEQAHYLLTVLRMAEDQQVLVFNGRDGEFLSALKP 66 Query: 61 VGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K ++ Q+R Q + ++F+P+K RL+Y++QK+ EMG+ I P T +TQ Sbjct: 67 LSKKAAELEIVEQTRPQPPLPRLDFLFAPLKVGRLEYLVQKATEMGVRQITPAFTDHTQL 126 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N R+ + AAEQC L +P + L+ LL WD +I+F +E+ N + Sbjct: 127 HKVNAARLEANILEAAEQCGNLAIPQLQEAQKLDALLDGWDPARRIIFCNESQAGNNPTD 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L A+ ++A+L+GPEGG+ E+E L +LPF+T + LGPRILR Sbjct: 187 ILSAVEE-RDLALLVGPEGGFSDRERERLLALPFLTAIPLGPRILR 231 >gi|307611825|emb|CBX01538.1| hypothetical protein LPW_32251 [Legionella pneumophila 130b] Length = 242 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM+ G+ + LFNG + E+ + I V K F Sbjct: 5 RIYQPGEYQPGQLLELSPEAGQHVGVVLRMEPGEQLTLFNGDNKEFTASIEMVKKKQVFV 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + K R++ ++QKS E+G+ I P+IT + Sbjct: 65 RIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSAELGVACITPIITERCQVKIDKEKM 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 M + I A EQC +P + P L+ ++ + +++ + Sbjct: 125 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 H P+VA++IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA Sbjct: 185 QH-----PDVALIIGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAA 238 Query: 241 CGD 243 GD Sbjct: 239 GGD 241 >gi|27382634|ref|NP_774163.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium japonicum USDA 110] gi|27355806|dbj|BAC52788.1| blr7523 [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 144/241 (59%), Gaps = 1/241 (0%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 RLFVD PL + DQ +YL +VLR+ G +L FNG+DGEW + I + Sbjct: 7 FRAPRLFVDAPLAQDARVPLDRDQSNYLGNVLRLAAGAEVLAFNGRDGEWQAAIEGRKRP 66 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + Q+R Q + +D+ Y+F+P+K RLDYM+QK++EMG ++PV+TR+TQ + N Sbjct: 67 DGLVILQQTRPQDRLADLTYVFAPLKHARLDYMVQKAIEMGAAGLQPVLTRFTQASRVNT 126 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R+R + A+EQC IL++ + P LE L ++F DE EN ++ L Sbjct: 127 ERMRANVVEASEQCGILSIATVAEPVPLERFLSQRAAGRLLIFCDEAAEVENPVQSLQGA 186 Query: 185 AH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + +LIGPEGG+ EE+ L P + L+LGPRI+R+DTAAVAA+ALVQ + GD Sbjct: 187 REAGQGIDVLIGPEGGFAEEERALLLRQPKILRLALGPRIMRADTAAVAALALVQTVLGD 246 Query: 244 W 244 W Sbjct: 247 W 247 >gi|205374146|ref|ZP_03226946.1| 16S rRNA m3U1498 methyltransferase [Bacillus coahuilensis m4-4] Length = 248 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ + + GD +H++ V+RMKEGD+ L + + KI + Sbjct: 1 MQRYFLQTD--SNERVRVKGDDFHHMIRVMRMKEGDSFLSVFQDNKSAICKIEEISNDSL 58 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 VE++ S + + K ++L+ +IQK E+G P ++ + Sbjct: 59 TASVVEWELNSTEMPVRITIVSGLPKGDKLESIIQKGTELGATEFIPFKATRSIVKWDDK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176 H ++R AAEQ T+PFI P TL+ +L+ N + F +E E+ Sbjct: 119 KAHKKIERFEKIAKEAAEQSHRRTIPFISEPKTLKQILQTVPSNAVKLVAFEEEAKQGES 178 Query: 177 S--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 S E+L + + ++ ++ GPEGG EE L + F++ LGPRILR++TA + A+ Sbjct: 179 SQFKEELQKVQNGDHIMMIFGPEGGLTEEEVHELKNHDFIS-CGLGPRILRTETAPLYAL 237 Query: 235 ALVQAIC 241 A + Sbjct: 238 AAISYEL 244 >gi|291525040|emb|CBK90627.1| RNA methyltransferase, RsmE family [Eubacterium rectale DSM 17629] Length = 246 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 112/240 (46%), Gaps = 9/240 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + + FV+ +G +++ +VLRMK G+ I + + + IS + + Sbjct: 1 MYQFFVEEEQVHSDSISITGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQ 118 ++ + T+ + K ++++ +IQK+VE+G+ I PV + + Sbjct: 61 IAAIDSADETGTELDNHIVLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177 + R + SAA+Q +P + P T + LK + + +V + G + + Sbjct: 121 KAAKKLQRWQAIAESAAKQSKRTVIPTVKQPVTYKEALKIASELDITLVPYENERGMDAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + + + +++GPEGG+ EE + + +SLG RILR++TA +AA+A++ Sbjct: 181 REIMGQLKAGQTIGVVVGPEGGFAPEEIALVDENATMHRISLGRRILRTETAGLAALAML 240 >gi|153815335|ref|ZP_01968003.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756] gi|317501690|ref|ZP_07959881.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088425|ref|ZP_08337340.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847397|gb|EDK24315.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756] gi|316896941|gb|EFV19021.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330408192|gb|EGG87680.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 108/242 (44%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F + +++ G +++ +VLRMK G+++ + +G+ +L ++ K Sbjct: 1 MQQFFAEPSWITESEILIRGADLNHMKNVLRMKVGEDVRINDGQGTTYLCCLNRYEKDQA 60 Query: 67 FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ S++ K +++++++QKSVE+G I P + + + Sbjct: 61 VLDVFRKLDTETELPSEIILFQGLPKGDKMEWIVQKSVELGAHKIVPFSAKRSVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 +R + AAEQ +P + + L+ + + ++ + G + Sbjct: 121 KAVKKQERWQLIAKGAAEQSGRGVIPEVCGVCSFTEALEQAESLDVVLIPYELEEGMAET 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I +V I IGPEGG+ E P++LG RILR++TA + ++++ Sbjct: 181 VRVIEQIEPGQSVGIFIGPEGGFEEAEVLRAKEKG-ARPVTLGKRILRTETAGLTTLSIL 239 Query: 238 QA 239 Sbjct: 240 MY 241 >gi|71898620|ref|ZP_00680790.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] gi|71731567|gb|EAO33628.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] Length = 244 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 ++E S + + + + ++D ++QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAITRGEKMDLIVQKATELGVVAIVPVDTERSGVRLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P + P L+ L + D + + D SE+ Sbjct: 122 ERVAKRLAHWNNVVISACEQCGRTRVPEVQMPCALQVLPEILDPDTLRLILD--PKSEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A+A++ Sbjct: 180 LSTLSRLTPVE-VTIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAVL 237 Query: 238 QAICGD 243 QA GD Sbjct: 238 QAQLGD 243 >gi|228941478|ref|ZP_04104028.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228967380|ref|ZP_04128414.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto str. T04001] gi|228974408|ref|ZP_04134976.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981003|ref|ZP_04141305.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407] gi|228778663|gb|EEM26928.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407] gi|228785244|gb|EEM33255.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792306|gb|EEM39874.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto str. T04001] gi|228818128|gb|EEM64203.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942094|gb|AEA17990.1| surface protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 249 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD I + I + Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|71275479|ref|ZP_00651765.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon] gi|71900654|ref|ZP_00682779.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] gi|170729396|ref|YP_001774829.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M12] gi|71163779|gb|EAO13495.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon] gi|71729589|gb|EAO31695.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1] gi|167964189|gb|ACA11199.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 244 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 ++E S + + + + ++D ++QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAIARGEKMDLIVQKATELGVVAIVPVDTERSGVRLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSEN 176 + + +SA EQC +P + P L+ L + D + +++ ++ + Sbjct: 122 ERVAKRLAHWNNVVVSACEQCGRTRVPEVQMPRALQALPEILDPDTLRLILDPKSEHRLS 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L +L +A V I IGPEGG+ + E L F+ SLGPRILR++TA + A+A+ Sbjct: 182 TLSRLTPVA----VTIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAV 236 Query: 237 VQAICGD 243 +QA GD Sbjct: 237 LQAQLGD 243 >gi|118479479|ref|YP_896630.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis str. Al Hakam] gi|225866292|ref|YP_002751670.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102] gi|229186551|ref|ZP_04313712.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1] gi|118418704|gb|ABK87123.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|225790106|gb|ACO30323.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102] gi|228596810|gb|EEK54469.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1] Length = 249 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S + K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|149186955|ref|ZP_01865263.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21] gi|148829344|gb|EDL47787.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21] Length = 239 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFV L G+Q +YLA V+R+ +GD ++L + GEW+++++ GK + Sbjct: 13 PRLFVSDELGTGRIVCIEGNQANYLARVMRVGKGDAVILCDDVTGEWIARVTEAGKRRVE 72 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 KVE R + + D + +K +R D +++KS E+G+ AI PVITR N +R Sbjct: 73 LKVEDHLRPREEVPDFWLCPALLKKDRFDVVLEKSTELGVAAIHPVITRRCVADKLNGER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 T AAEQC LP + P L+ LL++W + + FADE G + +A Sbjct: 133 ASTIVTEAAEQCARTALPQVAEPVKLDALLRDWPEDRILFFADEEGGEPAADAFCYADGP 192 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A+L GPEGG+ E+ + + P P+SLGPRILR +TAA+A +A+ Sbjct: 193 A---ALLTGPEGGFDDAERAAIRAHPAARPISLGPRILRGETAALAGIAV 239 >gi|52141192|ref|YP_085637.1| hypothetical protein BCZK4058 [Bacillus cereus E33L] gi|51974661|gb|AAU16211.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 249 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKHVNETSIRIVGDDVHHIARVMRMSVGDHIYCCV-NGRTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|228929355|ref|ZP_04092379.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830306|gb|EEM75919.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 249 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEIIVLREHNFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|218899479|ref|YP_002447890.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842] gi|218543817|gb|ACK96211.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842] Length = 249 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD I + I + Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|323141893|ref|ZP_08076754.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT 12067] gi|322413640|gb|EFY04498.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT 12067] Length = 247 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV P G +++ VLRM+ G + + + L++IS + Sbjct: 1 MHRFFV--PQLYNETMTIEGVDARHISKVLRMQPGAQLQIVSDDGVSALAEISAIDSECV 58 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + S + K +++++IQK+VEMG ++ PV ++ Sbjct: 59 TVHCLEKLAESHEPAVRLILAQGLAKGEKMEFIIQKAVEMGAYSVVPVAMEHSVVRLDGA 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + SAA+Q +P + P T+ +L D +I+ + + Sbjct: 119 KAAKKVERWQKIAESAAKQSKRDIIPEVQPVQTMAQMLAANDCATKIIAYECEDKKSLKA 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L++ A + ++ ++IGPEGG E ET + V P+SLG RILR++TA + A++ Sbjct: 179 ALKEAQAKGALTDLLLIIGPEGGISEAELETARAAGAV-PVSLGRRILRAETAGLVAISA 237 Query: 237 VQAICGD 243 + GD Sbjct: 238 IFYETGD 244 >gi|325922372|ref|ZP_08184146.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865] gi|325547154|gb|EGD18234.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R V PL + + ++L VLR++EGD +LFNG ++ ++I+ GK Sbjct: 2 RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITLAGKRE 61 Query: 66 RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + +++ + I + ++D ++QK+ E+G+ AI PV T+ Sbjct: 62 ARAMLERAQPLCNESPLSITLIQGIARGEKMDLILQKATELGVAAIVPVNAERTEVKLDP 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R+ ISA EQ +P + P L+ + D + + D E+ Sbjct: 122 ARMEKRVTHWRSVVISACEQSGRARVPTVAAPLGLQDAAQASDPHALRLTLD--PHGEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L +A V + IGPEGG+ ++ L F + L LGPRILR++TA +AA+A + Sbjct: 180 LATLP-VAAQQRVIVAIGPEGGWSPRDRAILGEAGF-SGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 Q+ GD Sbjct: 238 QSRFGD 243 >gi|254492173|ref|ZP_05105347.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxidans DMS010] gi|224462498|gb|EEF78773.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxydans DMS010] Length = 242 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R F + + + VLR+K+G I LFNGK E+ + +++V + Sbjct: 2 RIPRFFCPELDASQRVLPLPEAVHRHAIQVLRLKQGARIQLFNGKGLEYQATLTHVERKR 61 Query: 66 RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 E +++ ++ + + R+D+ IQK+VE+G+ I PV+T Sbjct: 62 SEAELGEQLTQASESPLNITLLQGISRGERMDFAIQKAVELGVNQIIPVMTERCNVQLKH 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + +SA EQ LP + ++ L + ++V + N Sbjct: 122 DRIEKRLAHWQGVIVSACEQSGRAVLPTLSEVVDMQNALNSTADTMKLVLDPQAQTRFND 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ + +LIGPEGG +E + S F T + GPRILR++TA+ AA+A+V Sbjct: 182 LQAATQL------TLLIGPEGGLTDDEVKMATSSGF-TAVQFGPRILRTETASTAALAVV 234 Query: 238 QAICGD 243 Q++ GD Sbjct: 235 QSLWGD 240 >gi|313669146|ref|YP_004049430.1| hypothetical protein NLA_18700 [Neisseria lactamica ST-640] gi|313006608|emb|CBN88073.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 241 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R + L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ ++ + T+ ++ I S R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILHEETADTESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+ + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVSPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TA +AA+A Sbjct: 174 ACKLSDIRHPSGAIVFMVGPEGGWTEQEEQYAFDAGF-QAVTLGKRILRTETAPLAAIAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|154482579|ref|ZP_02025027.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC 27560] gi|149736604|gb|EDM52490.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC 27560] Length = 245 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 116/244 (47%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R FV + G +++ +VLRMK+G+ IL+ +G+D E++ I + + + Sbjct: 1 MYRFFVKKDQIQEDAVIIIGSDVNHIKNVLRMKKGETILISDGEDREYVCTIDELENEQV 60 Query: 66 RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R K+E + ++ V + K ++++ +IQK +E+G I PV T+ + Sbjct: 61 RAKIEDVNGVAKELPIKVTLFQALPKGDKMETVIQKMIELGAYEIVPVFTKRCIVKLDNK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 R + SAA+Q +P + P T + LK + + ++ + ++ Sbjct: 121 KAVSKTKRWNSIAESAAKQSKRGIIPKVSMPVTYKEALKMAEAMDMVLIPYENAENMAHT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I V I IGPEGG+ EE E + ++LG RILR++TA +A M+++ Sbjct: 181 RQVVSQIKTGMTVGIFIGPEGGFAEEEVEQAINTGAY-DITLGKRILRTETAGMALMSVL 239 Query: 238 QAIC 241 Sbjct: 240 MFET 243 >gi|311069145|ref|YP_003974068.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942] gi|310869662|gb|ADP33137.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942] Length = 256 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 16/248 (6%) Query: 7 LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ + +G+ H++ +V+RM GD I+ + E ++ V K Sbjct: 1 MQRYFIELTKQQMEAGPAFMITGEDVHHITNVMRMSAGDEIICCSLDGHEAKCELQSVSK 60 Query: 64 SIRFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + E+ ++ V K ++L+++IQK E+G P + Sbjct: 61 EKVACLVSEWTGANRELPIKVHIASGLPKGDKLEWIIQKGTELGSSMFLPFQAARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + P T + LL + V A E + Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEIPDVAPVHTFQQLLSKVQDFDKCVVAYEESSKQ 180 Query: 176 N----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + L ++ ++ I+ GPEGG E E L V P LGPRILR++TA + Sbjct: 181 GETSALVSVLSSLPDQSSLLIIFGPEGGLTESEVEQLKDKGAV-PCGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A+ V Sbjct: 240 YALGAVSY 247 >gi|52843130|ref|YP_096929.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630241|gb|AAU28982.1| hypothetical protein lpg2936 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 244 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM++G+ + LFNG + E+ + I V K F Sbjct: 7 RIYQPGEYQPGQLLELSPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIERVKKKQVFV 66 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + K R++ ++QKS E+G+ I P+IT + Sbjct: 67 RIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSAELGVACITPLITERCQVKIDKEKM 126 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 M + I A EQC +P + P L+ ++ + +++ + Sbjct: 127 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 186 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P+VA++IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA Sbjct: 187 -----QPPDVALIIGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAA 240 Query: 241 CGD 243 GD Sbjct: 241 GGD 243 >gi|291557449|emb|CBL34566.1| RNA methyltransferase, RsmE family [Eubacterium siraeum V10Sc8a] Length = 257 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D + + ++A VLRM++GD ++ + ++L ++S Sbjct: 17 PRFFSDTIDENDRIIYMNDEDSKHIAQVLRMRKGDKAIICDKNGHDYLCELSSADNKNSV 76 Query: 68 K---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ + S ++ + K ++LD+++QK+ E+G I P +++ + Sbjct: 77 EFAILDKKDNSAEPDIEITLYQAIPKNDKLDFIVQKATELGAVRIVPFMSKRCVSRPDAK 136 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ A++QC +P + P T + + + D + + E G + S Sbjct: 137 SADKKVQRLQRIAYEASKQCGRGKIPGVMPFTDFKSAVNSIDSDTLPIIFYECGGKKLSE 196 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L +A+ IG EGG+ EE + S T + LG RILR +TA VAA+A++ Sbjct: 197 LDLS----YKKIAVFIGSEGGFEKEEVDYALSKG-ATAVHLGERILRCETAPVAALAVLM 251 Query: 239 AICG 242 + G Sbjct: 252 NLTG 255 >gi|172056822|ref|YP_001813282.1| hypothetical protein Exig_0784 [Exiguobacterium sibiricum 255-15] gi|171989343|gb|ACB60265.1| protein of unknown function DUF558 [Exiguobacterium sibiricum 255-15] Length = 248 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ S D H++ +V+RM GD IL+ +G + ++ + K Sbjct: 1 MQRYFVEQTARAGNTFTLSKDDAHHIKNVMRMDVGDEILVLDGTG-LFRCRLEQLDKQTA 59 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 +E V ++ K ++++ + QK+ E+G+ + R V + Sbjct: 60 VAELLEELPIETELPIHVTIAYALPKGDKVELVAQKATELGVSRLLVFESARSVSKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R++ + AAEQ LP I T + +L+ + A E E Sbjct: 120 KIPKKLERLQKISKEAAEQSYRAHLPTIEY-VTYDEVLQCAADYTACLIAYEESAKEGEA 178 Query: 179 EK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + ++ ++IGPEGG E L + FV P SLG RILR++TA + + Sbjct: 179 AAFASTLSRLQSGDSLLVVIGPEGGLTETEVTRLTAGGFV-PASLGRRILRTETAPLYVL 237 Query: 235 ALVQAIC 241 + V Sbjct: 238 SAVSYHF 244 >gi|210623864|ref|ZP_03294099.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275] gi|210153290|gb|EEA84296.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275] Length = 256 Score = 242 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 12/247 (4%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FVD + G+ ++ VLR +EG+ + + +G+D E++ +I + K Sbjct: 7 MDRFFVDKNNINLEENTCIIEGEDVKHITKVLRYREGEKLEICDGEDNEYVGEIKSMSKE 66 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ + + + V+ K +++Y++QK E+G I V T+ + Sbjct: 67 EVCLDIIDKRDIKRESKLRVRVYQGMPKGPKMEYILQKLTEVGTDEIILVDTKRSVAKVD 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + ++R AA+Q +P + + + L++ N + E + Sbjct: 127 GKKEDKKLERWERIIYEAAKQSKRGKIPTLKGVLSFKEALEDMKRNDYNICPYEDERNIP 186 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++++ + I ++ I IGPEGG EE + L ++LGPRILR++TA+ A AL Sbjct: 187 LVKEIRGL-DIESIGIFIGPEGGIADEEIDALKENG-AKVVTLGPRILRTETASTVASAL 244 Query: 237 VQAICGD 243 VQ GD Sbjct: 245 VQYELGD 251 >gi|54295775|ref|YP_128190.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens] gi|53755607|emb|CAH17109.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens] Length = 244 Score = 242 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM++G+ + LFNG + E+ + I V K F Sbjct: 7 RIYQPGEYQPGQFLELSPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIEMVKKKQVFV 66 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + K R++ ++QKS E+G+ I P+IT + Sbjct: 67 RIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSAELGVACITPIITERCQVKIDKEKM 126 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 M + I A EQC +P + P L+ ++ + +++ + Sbjct: 127 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 186 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P+VA++IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA Sbjct: 187 -----QPPDVALIIGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAA 240 Query: 241 CGD 243 GD Sbjct: 241 GGD 243 >gi|148361269|ref|YP_001252476.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby] gi|148283042|gb|ABQ57130.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby] Length = 242 Score = 242 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM++G+ + LFNG + E+ + I V K F Sbjct: 5 RIYQPGEYQPGQVLELSPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTASIERVKKKQVFV 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + K R++ ++QKS E+G+ I P+IT + Sbjct: 65 RIASVLEVNRESPLKIHLAQAISKGERMEVVMQKSAELGVACITPIITERCQVKIDKEKM 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 M + I A EQC +P + P L+ ++ + +++ + Sbjct: 125 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P+VA++IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA Sbjct: 185 -----QPPDVALIIGPEGGFSDEEITLTSGYGFL-PLSLGPRVLRTETAAITALSVLQAA 238 Query: 241 CGD 243 GD Sbjct: 239 GGD 241 >gi|187935444|ref|YP_001885097.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B str. Eklund 17B] gi|187723597|gb|ACD24818.1| conserved surface protein [Clostridium botulinum B str. Eklund 17B] Length = 254 Score = 242 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 14/250 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F ++GK GD ++ VLR+ EG+ ++L N + E+L +I VGK Sbjct: 1 MHKFFTSACNITGSEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 +E S + + ++ K ++D ++QK E+G+ P+IT + Sbjct: 61 IVNILEELSTNNESRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 ++R+ + AA+Q +P + + L I+ E G ++ Sbjct: 121 FKKLERLNRIALEAAKQSKRSIIPNVREVVEFDEALNELQGLDLILVPYENAENFGFKSL 180 Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +++L + I N+ I+IGPEGG+ E ETL ++LG RILR++TA A Sbjct: 181 VKELSDKNVDLNSIENIGIVIGPEGGFEESEIETLK-HKGAYIITLGNRILRTETAGFVA 239 Query: 234 MALVQAICGD 243 +L+Q D Sbjct: 240 TSLIQYELAD 249 >gi|182680714|ref|YP_001828874.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M23] gi|182630824|gb|ACB91600.1| protein of unknown function DUF558 [Xylella fastidiosa M23] Length = 242 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 1 MSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRREA 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 ++E S + + + + ++D ++QK+ E+G+ AI PV T ++ Sbjct: 61 WARIEGVSEVCNESPLAITLVQAITRGEKMDLIVQKATELGVVAIVPVDTERSGVRLDSE 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ISA EQC +P + P L+ L + D + + D SE+ L Sbjct: 121 RVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILD--PKSEHRL 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A+A++Q Sbjct: 179 STLSRLTPVE-VIIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAVLQ 236 Query: 239 AICGD 243 A GD Sbjct: 237 AQLGD 241 >gi|84786494|gb|ABC62676.1| hypothetical protein ELI_02920 [Erythrobacter litoralis HTCC2594] Length = 260 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 25/257 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FKVEY 71 P+ T G+ HYL V+R+ GD ++L + GEW K++ V K I + Sbjct: 2 PEPIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRIVTLEPVE 61 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131 + R + + D + +K +R D +++K+ E+G+ AIRPV+TR N +R R Sbjct: 62 KLREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAERARAIV 121 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--------------------- 170 AAEQC LP + P L+ LL++W + + FADE Sbjct: 122 TEAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSESLRRQG 181 Query: 171 -TCGSENSLEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 G + L+ A A+LIGPEGG+ E++ + + P ++LGPRILR + Sbjct: 182 PQAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPRILRGE 241 Query: 228 TAAVAAMALVQAICGDW 244 TAA+AA AL GDW Sbjct: 242 TAAIAATALWMGTVGDW 258 >gi|310826526|ref|YP_003958883.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612] gi|308738260|gb|ADO35920.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612] Length = 245 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 + R FV G+ + ++ VLR+++ + I + +G+ ++++ + VGK Sbjct: 1 MHRFFVSPGQIEDGLVTIEGEDFKHITKVLRLRDDEAIEVCDGRGTDYIACVETVGKDSL 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----Q 118 R SR +T V K +++ +IQK VE G +I P + T Sbjct: 61 KGRILESRPSRGETDSLRVTLFQGVPKGQKMESVIQKCVEAGAASIVPFTSERTVVKLGD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + AA+Q +P + TTL + D+ ++ A E + Sbjct: 121 KEEKKTRRWQRVAYEAAKQSKRGIIPHVAEVTTLSAVADTLDNYDLVLIAYEGEEESSLK 180 Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + +A++IGPEGG+ E + + +SLG RILR++TA V +A + Sbjct: 181 DVISCLEFDPERIAVIIGPEGGFAPAEVAMIEEAGGYS-VSLGRRILRTETAGVVLLAQL 239 Query: 238 QAICGD 243 D Sbjct: 240 NFFYED 245 >gi|115522898|ref|YP_779809.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris BisA53] gi|115516845|gb|ABJ04829.1| protein of unknown function DUF558 [Rhodopseudomonas palustris BisA53] Length = 258 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 2/229 (0%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 ++ RLFVD PL TQ + +Q +YL +VLR+ G +L FNG DGEW + I Sbjct: 3 QLDFRSPRLFVDAPLVAGTQVPLTREQANYLGNVLRLSPGGRVLAFNGSDGEWQALIVGG 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + R ++ Q+R Q + DV Y ++P+K RLDYM+QK+VE+G A+ PV+TR+TQ T Sbjct: 63 KRLERLEMLLQTRPQDRLPDVTYAYAPLKHARLDYMVQKAVELGAAALVPVLTRFTQATR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 N +R+R I AAEQC IL+L + PT LE L D +VF DE + + L Sbjct: 123 VNTERMRANVIEAAEQCGILSLAAVEEPTKLERWLTARDGQRLLVFCDEDAEIADPVAAL 182 Query: 182 HAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +LIGPEGG+ EE++ L P V L+LGPRI+R+DT Sbjct: 183 AGARDRAQAGIDVLIGPEGGFAEEERDLLLRQPSVLRLALGPRIMRADT 231 >gi|304316647|ref|YP_003851792.1| hypothetical protein Tthe_1189 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778149|gb|ADL68708.1| protein of unknown function DUF558 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 240 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 111/232 (47%), Gaps = 8/232 (3%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQT 77 + +GD H++ VLR K G +++ NGK+ +S + S+ K+ + ++ Sbjct: 8 DGIVRINGDDAHHIIDVLRFKIGTKLIISNGKNQYIVSILDIENSSVILKIIEEYNQVVE 67 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131 ++ K++++D +IQK E+G+ I PV T ++ +N + ++R + + Sbjct: 68 SPINITLYQGLPKSDKMDLIIQKCTEIGIKKIVPVETEFSTIKIKEKNIYNKINRWKKIS 127 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 + A++Q +P + P + L++ + + E + + L + N+ Sbjct: 128 LEASKQSGRSIVPDVLVPVGFKDALESLNEFDLCLIPYEKETNMRLKDVLKKNFNAKNIC 187 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + IGPEGG+ E + P++LGPRILR++TA + +++ GD Sbjct: 188 VFIGPEGGFSENEIMAAIEYGAI-PVTLGPRILRTETAGIVTSSIILYELGD 238 >gi|167564119|ref|ZP_02357035.1| hypothetical protein BoklE_16297 [Burkholderia oklahomensis EO147] Length = 253 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 18/253 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S + R FVD L D + VLR+ GD + LFNG G++ +++ + K Sbjct: 6 SAIPRFFVDAELQSDATLALPADVARH-VQVLRLAAGDAVTLFNGAGGQYRAEVVELDKR 64 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + + +++D++I+K+VE+G AI P+ T Sbjct: 65 AALVRIGAFTPADVEAPYRITLVQGIAGGDKMDWLIEKAVELGAAAIAPLSTARGVVRLS 124 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADET 171 + + + ++ EQC +P + P + L +++ + Sbjct: 125 GERAQKRVAHWQAVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELRLMLSPRA 184 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L + V +LIGPEGG +E+E F + + LGPR+LR++TA + Sbjct: 185 SVG---FADLPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFAS-ILLGPRVLRTETAGI 240 Query: 232 AAMALVQAICGDW 244 A +A + A G W Sbjct: 241 AMLAALAARWGGW 253 >gi|241664175|ref|YP_002982535.1| hypothetical protein Rpic12D_2592 [Ralstonia pickettii 12D] gi|240866202|gb|ACS63863.1| protein of unknown function DUF558 [Ralstonia pickettii 12D] Length = 249 Score = 242 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R FVD PL T ++ HVLR+ GD++ LF+G E+ +++ + K Sbjct: 3 LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINKRDA 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + ++ T+ + +++D++I+K+VE+G+ A+ P+ T + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAVTPLQTERAVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176 + + +A EQC +P + P +TL L +++ + S Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVAPVSTLREWLAAARSTDAPRVLLSPRGTQSLT 181 Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +LIGPEGG +E+ S F+ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|317128303|ref|YP_004094585.1| hypothetical protein Bcell_1591 [Bacillus cellulosilyticus DSM 2522] gi|315473251|gb|ADU29854.1| protein of unknown function DUF558 [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++R F++ + + SGD +++ V+RM++GDNI+ + IS + S I Sbjct: 1 MQRYFINPQMFHEDHVVISGDDAKHISRVMRMEQGDNIICCTTSGVCYECVISEMKDSYI 60 Query: 66 RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E Q +S +V K ++ +++IQK E+G P + + Sbjct: 61 YATIEKQESKSVELPVNVTIGHGLPKGDKFEWVIQKGTELGAKNFLPFEAERSIVKLDKK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +DR AAEQ LP + LL + D ++ A E + Sbjct: 121 KADKKIDRWNKIAKEAAEQSHRQQLPKVMEVQRFSQLLDHVDGYSYVLVAYEEAAKNDEK 180 Query: 179 EK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L + ++ L GPEGG+ E L LGPRILRS+TA + + Sbjct: 181 SQLFSVLQEVKKGESILFLFGPEGGFSDREINELTKKG-ALICGLGPRILRSETAPLYGL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 TAISYHL 246 >gi|187930070|ref|YP_001900557.1| hypothetical protein Rpic_3002 [Ralstonia pickettii 12J] gi|187726960|gb|ACD28125.1| protein of unknown function DUF558 [Ralstonia pickettii 12J] Length = 249 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R FVD PL T ++ HVLR+ GD+I LF+G E+ +++ + K Sbjct: 3 LPRFFVDTPLAPNTTVTLDESVTRHI-HVLRLAAGDDICLFDGSGYEFRARLDAINKRDA 61 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V+ + + +++D++I+K+VE+G+ A+ P+ T + Sbjct: 62 TASLVDATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERGVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176 + + +A EQC +P + P TL L +++ + S Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPVVAPVATLREWLATAKSTDAPRVLLSPRGAQSLT 181 Query: 177 SLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + + +LIGPEGG +E+ + F+ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAVQSRTRIVGSGIVLLIGPEGGLSPDEEALAEAAGFL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|169349834|ref|ZP_02866772.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552] gi|169293402|gb|EDS75535.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552] Length = 246 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 11/240 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D L K +G+ H+L +V+R K G+ I+ + +L + + + + Sbjct: 1 MQRYFIDEDLKDKDCLILTGNDLHHLKNVMRSKNGEKIICIDINGMVYLCVLDDLDQGLI 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 VE + +V +++ K ++ + ++QK+ E+G+ I P+ITR Sbjct: 61 KIVEELDENNELDVEVTLVYALPKGDKFELVLQKTTELGVSRIVPLITRRCVVKSDKAKF 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE---NS 177 + R A +Q +P I L+ LK + + +V +E ++ Sbjct: 121 SKKLTRYEKILKEATQQSRRNKVPEIVNVIKLDE-LKEYLGDYNLVAYEEKAKNDTDFAL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + + I++G EGG+ EE + S+ + SLG RILRS+TA + ++++ Sbjct: 180 KECLKQLNPGDKITIIVGSEGGFDYEEISMMESMN-INACSLGKRILRSETAPLYLLSVI 238 >gi|251779327|ref|ZP_04822247.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083642|gb|EES49532.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 254 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 14/250 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F T+GK GD ++ VLR+ EG+ ++L N + E+L +I VGK Sbjct: 1 MHKFFTSACNITGTEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIESVGKQEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 +E S + + ++ K ++D ++QK E+G+ P+IT + Sbjct: 61 IVNILEELSTNNESRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 ++R+ + AA+Q +P + + L I+ E G ++ Sbjct: 121 FKKLERLNRIALEAAKQSKRSIIPNVREVVEFDEALNELQRLDLILVPYENAENFGFKSL 180 Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +++L + I N+ ++IGPEGG+ E ETL ++LG RILR++TA A Sbjct: 181 VKELSDKNVDLNSIENIGVVIGPEGGFEESEIETLK-HKGAYIITLGNRILRTETAGFVA 239 Query: 234 MALVQAICGD 243 +L+Q D Sbjct: 240 TSLIQYELAD 249 >gi|229075985|ref|ZP_04208958.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18] gi|228707097|gb|EEL59297.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18] Length = 249 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G+ A P + + Sbjct: 60 ETAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGVAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|229098782|ref|ZP_04229720.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29] gi|228684626|gb|EEL38566.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29] Length = 249 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 ETAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|28198087|ref|NP_778401.1| hypothetical protein PD0156 [Xylella fastidiosa Temecula1] gi|28056147|gb|AAO28050.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|307579179|gb|ADN63148.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa subsp. fastidiosa GB514] Length = 244 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 ++E S + + + + ++D ++QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAITRGEKMDLIVQKATELGVVAIVPVDTERSGVRLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P + P L+ L + D + + D SE+ Sbjct: 122 ERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILD--PKSEHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L + + V I IGPEGG+ + E L F+ SLGPRILR++TA + A+A++ Sbjct: 180 LSTLSRLTPVE-VIIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAVL 237 Query: 238 QAICGD 243 QA GD Sbjct: 238 QAQLGD 243 >gi|163791113|ref|ZP_02185532.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7] gi|159873585|gb|EDP67670.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7] Length = 253 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 15/249 (6%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F+ L GD +H++ V+RMK G + L ++++I+ + Sbjct: 1 MQRYFLKDDLTDYQNQTISIDGDSFHHMVKVMRMKVGHRVYLVTKDQKAFIAEINAIEDQ 60 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116 VE R Q +V K ++LD +IQK E+G A P + Sbjct: 61 DVLLNWVEDDLRQQELPIEVTIASGLPKGDKLDLIIQKGTELGAHAFIPFAGSFSITKWD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-- 174 + +R++ AAEQ +P + P ++++ L++ + + A E Sbjct: 121 AKKAAKKTERLQKIAQEAAEQSHRTKIPTVQPLSSVKQLVEMKNQFDVCLVAYEESAKAG 180 Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +N ++ L + + I+ GPEGG EE + F+ P +LGPRILR++TA + Sbjct: 181 EDQNFVKGLKLLPAGGKLLIVFGPEGGLSKEEVDAFIESGFL-PCALGPRILRTETAPLY 239 Query: 233 AMALVQAIC 241 A+A Sbjct: 240 ALAATSYHF 248 >gi|20807439|ref|NP_622610.1| hypothetical protein TTE0958 [Thermoanaerobacter tengcongensis MB4] gi|20515963|gb|AAM24214.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 245 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++++FV+ G +H+L HVLR K GD I++ + + E L +I + K Sbjct: 1 MRKIFVEKGKIKGKFAYVDGKDFHHLIHVLRYKVGDKIVVSDMAE-EHLGRIEKIEKDRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 I F E + +V +K +++D ++QK E+G+ I P ++ ++ Sbjct: 60 ILFLEEKMEGNAESPLEVFLFQGILKADKMDLIVQKCTEIGVKRIIPFVSEFSVVDIKRA 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N ++R + + A +Q +P I P + + ++ + E + Sbjct: 120 NIDKKVERWKKISEEACKQSGRNIIPEISAPVSFKEAIEKAMECDLAIIPYEKEEKKRLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + + I IGPEGG+ +E E + + P++LGPRILR++TAA+A A+V Sbjct: 180 EVLKDVEDAKKIGIFIGPEGGFSQKEIEKAINNG-IVPVTLGPRILRAETAAIAVSAIVM 238 Query: 239 AICGD 243 GD Sbjct: 239 YQLGD 243 >gi|89100454|ref|ZP_01173316.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911] gi|89084797|gb|EAR63936.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911] Length = 248 Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + + +GD +H++ V+RMKEGD+I+ + +I + Sbjct: 1 MQRYFTNRD--KDGRFIIAGDDFHHITRVMRMKEGDSIICAVRGGRSAVCRIEEITDEQV 58 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V+++ S K ++L+ +IQK E+G P + + Sbjct: 59 IAEVVQWKEASSELPIKAAIASGLPKGDKLELIIQKGTELGASVFIPFTAARSIVKWDEK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 +R + AAEQ P + P +++ L+ + V A E + Sbjct: 119 KAGKKTERWQKIAKEAAEQSHRDLQPDVLQPVSMKELIDLGKGYDRKVIAYEEDAKDGES 178 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + ++ ++ GPEGG +E L F++ LGPRILR++TA + A+ Sbjct: 179 SAFASLLSGMEKGQSLLMVFGPEGGLSEKEVALLKDNGFLS-CGLGPRILRTETAPLYAL 237 Query: 235 ALVQAIC 241 A V Sbjct: 238 AAVSYHF 244 >gi|229104942|ref|ZP_04235598.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28] gi|228678436|gb|EEL32657.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28] Length = 249 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 ETAIVEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|299822883|ref|ZP_07054769.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601] gi|299816412|gb|EFI83650.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601] Length = 252 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 14/248 (5%) Query: 7 LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R FVD L +H+LA V+RM GD + + + ++I V K Sbjct: 1 MQRYFVDQVLTTDDDPIYIEAADHHHLARVMRMTTGDQVYIVFADNQFCTAEIVSVSEDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 ++ VE+Q+ + + K ++L++++QK E+G + R ++ Sbjct: 61 TLLKLVEWQTNNPELPIAITIASGLPKGDKLEWIVQKGTELGADSFIAFPSDRSIVKWDA 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + T +R++ AAEQ + +P I + + L + +V A E N Sbjct: 121 KKTEKKRERLQKIAKEAAEQSHRVHVPTITTLASGKQLAERCGEYDAVVVAYEESAKANE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L A+ + ++ GPEGG +E + + LGPRILR++TA + Sbjct: 181 KAVLASVFAALRPGMRLLVIFGPEGGISEQEIQLFKAQK-AHFAGLGPRILRTETAPLYL 239 Query: 234 MALVQAIC 241 +A Sbjct: 240 LAAASYQF 247 >gi|56421036|ref|YP_148354.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus kaustophilus HTA426] gi|56380878|dbj|BAD76786.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 258 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV SGD +++A V+RMK GD I+ + +I + Sbjct: 1 MQRYFVSGQAQQGGIVAISGDDAYHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHV 60 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 Q + + + K + + +IQK E+G P V+ + Sbjct: 61 QARIVQWKEERSELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + AAEQ + +P + P + LL +FA E Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARH 180 Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L A + + + GPEGG+ EE E L F +P SLGPRILR++TA + + Sbjct: 181 AALPALLSRLRPGGALLAVFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYEW 246 >gi|325295443|ref|YP_004281957.1| ribosomal RNA small subunit methyltransferase E [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065891|gb|ADY73898.1| Ribosomal RNA small subunit methyltransferase E [Desulfurobacterium thermolithotrophum DSM 11699] Length = 241 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 18/246 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R VD G + + VLR+++GD I++F+G+ E+L++I S+ Sbjct: 1 MQRFKVDK--VGNGVAYLRGQEARHALKVLRLRKGDEIIIFDGEGREYLAEIEAASPTSV 58 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 R KV E + ++ K + + IQK+ E+G+ I PV+ + + Sbjct: 59 RLKVLEEININRDSHLKTTLYMGLTNKLQKFELAIQKATELGVTEIIPVVCKRSSNAQNI 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +N + R ++AA+QC LP ++ P L + + + V ++ S Sbjct: 119 KNWDNKLRRWEEIVVNAAKQCGRNILPIVHSPVKLPEI--ENNSDLLFVLWEKGGKSLKD 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E A +V++++GPEGG+ EE E L F P+ LG RILR++TAA+A M LV Sbjct: 177 YESFSA----SSVSLIVGPEGGFDKEEIEILKEKGF-KPIYLGKRILRAETAAIAGMTLV 231 Query: 238 QAICGD 243 Q + GD Sbjct: 232 QFLWGD 237 >gi|270158328|ref|ZP_06186985.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289163426|ref|YP_003453564.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) [Legionella longbeachae NSW150] gi|269990353|gb|EEZ96607.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288856599|emb|CBJ10406.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) [Legionella longbeachae NSW150] Length = 242 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 118/243 (48%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM+EG+++ LF G + E+ + I V K Sbjct: 5 RIYQPGNYDTGQLLELSPEASQHVGVVLRMQEGEHLTLFCGDNREFDAIIETVKKKQVIV 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 V + S+ + + K R+++++QK+VE+G+ +I P++T + Sbjct: 65 VVGSIKKVSRESPLTIHLAQAISKGERMEWVMQKAVELGVASITPILTERCVVKLDQERM 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + + I+A EQ ++P ++ P TL L+ + + + Sbjct: 125 TKKLHQWQAIVIAACEQSGRNSVPQVHAPVTLSRYLEEIQAELKFILHPGQNKTWRDYTF 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + ++ +LIGPEGG +E + F PLSLGPRILR++TAA+ A++++QA+ Sbjct: 185 -----KVADIVLLIGPEGGLSEQEVQYTSKHGF-QPLSLGPRILRTETAAITALSVLQAV 238 Query: 241 CGD 243 GD Sbjct: 239 GGD 241 >gi|85858413|ref|YP_460615.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB] gi|85721504|gb|ABC76447.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB] Length = 274 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 8/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + RL+ L + + S + HY+ V RMK G + LF+G+ E+ + I + + Sbjct: 16 IPRLYYPCVLTVGDRCFLSEEHLHYVRSVQRMKPGSRLSLFDGRGQEYTAVIVDISAERA 75 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ + + + + + I + K ++D+++QK+ E+G+ I P + + + Sbjct: 76 LAEIIDRKSAPERPARITLIQALPKGQKMDFIVQKATELGVDEILPFSSERSIPRLPPEK 135 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R R AA QC +P I + +LK D + + E + + Sbjct: 136 ARLKTERWRKIAGEAARQCRRSDVPNIPEIQSFAGILKAADADSLKMIFWEEESRQGLKD 195 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + +IL+GPEGG SEE E + FV+ +SLG +IL+ +TAAVA +A++Q Sbjct: 196 LLKKFSGTCIFSILVGPEGGLTSEEVEAATAAGFVS-VSLGKQILKLETAAVAILAIIQY 254 Query: 240 ICG 242 G Sbjct: 255 EVG 257 >gi|296108607|ref|YP_003620308.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99 Alcoy] gi|295650509|gb|ADG26356.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99 Alcoy] Length = 242 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM++G+ + LFNG + E+ + I V K F Sbjct: 5 RIYQPGEYQPGQVLELSPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFV 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + K R++ ++QKS E+G+ I P+IT + Sbjct: 65 RIASVLEVNRESPLKIHLAQAISKGERMEVVMQKSAELGVACITPIITERCQVKIDKEKM 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 M + I A EQC +P + P L+ ++ + +++ + Sbjct: 125 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P+VA++IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA Sbjct: 185 -----QPPDVALIIGPEGGFSDEEITLTSGYGFL-PLSLGPRVLRTETAAITALSVLQAA 238 Query: 241 CGD 243 GD Sbjct: 239 GGD 241 >gi|83941416|ref|ZP_00953878.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36] gi|83847236|gb|EAP85111.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36] Length = 220 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83 Q HYL V+R G ++LLFNG DGEW ++++ GK Q++ D+ Sbjct: 2 DKAQAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAGKRGGVLACAEQTKPLHMPPDLW 61 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143 IF+PIK R D++++K+ EMG I PV + +T DR++ + + AAEQC + Sbjct: 62 LIFAPIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGRVQRDRLQAHAVEAAEQCGGTFV 121 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + L+ L+ W+ ++F DE E E+ A A AILIGPEGG+ Sbjct: 122 PEVADMVRLDRLIDRWEPERSLMFCDEALAGE---EEGLASARPGPWAILIGPEGGFSDS 178 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E+ L L + P++LGPRILR+DTAAVAAM L Q GDW Sbjct: 179 ERARLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTLGDW 219 >gi|54298937|ref|YP_125306.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila str. Paris] gi|53752722|emb|CAH14157.1| hypothetical protein lpp3004 [Legionella pneumophila str. Paris] Length = 244 Score = 240 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R++ + S + ++ VLRM++G+ + LFNG + E+ + I V K F Sbjct: 7 RIYQPGEYQPGQVLELSPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFV 66 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + K R++ ++QKS E+G+ I P+IT + Sbjct: 67 RIASVLEVNRESPLKIHLAQAISKGERMEVVMQKSAELGVACITPIITERCQVKIDKEKM 126 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 M + I A EQC +P + P L+ ++ + +++ + Sbjct: 127 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 186 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P+VA++IGPEGG+ EE F+ PLSLGPR+LR++TAA+ A++++QA Sbjct: 187 -----QPPDVALIIGPEGGFSDEEITLTSGYGFL-PLSLGPRVLRTETAAITALSVLQAA 240 Query: 241 CGD 243 GD Sbjct: 241 GGD 243 >gi|257095553|ref|YP_003169194.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048077|gb|ACV37265.1| protein of unknown function DUF558 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 254 Score = 240 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 16/247 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R PL + Q + VLR++ GD + LF G GE+ ++I+ + + +R Sbjct: 5 PRFHCPVPLAVGAQVDLPEVVAQHAVKVLRLRRGDAVTLFTGAGGEYSARIAGIER-LRV 63 Query: 68 KVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE T+ + + + +++D +QK+VE+G+ PVI+R + Q Sbjct: 64 SVEILQWLPTERESPLSITLVQALQAGDKMDMTVQKAVELGVDRFVPVISRRSVVRLADQ 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSEN 176 + R ++ EQC LP + P +LE L +++ A Sbjct: 124 RALRRAEHWRGVVAASCEQCGRNRLPEVAIPESLEHWLMRPPPPGVLRLLLAPVASY--- 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 SL L + ++ +L+G EGG EE F++ + LGPRILR++TA +AA+A Sbjct: 181 SLAMLSGPSADGHIELLVGAEGGLAPEEVRLAALAGFLS-VRLGPRILRTETAGLAALAA 239 Query: 237 VQAICGD 243 +Q + GD Sbjct: 240 IQFLWGD 246 >gi|229117808|ref|ZP_04247172.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3] gi|228665605|gb|EEL21083.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3] Length = 249 Score = 240 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 ETAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|228902836|ref|ZP_04066980.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222] gi|228856792|gb|EEN01308.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222] Length = 249 Score = 240 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD I + I + Sbjct: 1 MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + I+ GPEGG EE L FV P SLGPRILR++TA + A+ Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PSSLGPRILRTETAPLYAL 238 Query: 235 ALVQAIC 241 + Sbjct: 239 SAASYHF 245 >gi|15894567|ref|NP_347916.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium acetobutylicum ATCC 824] gi|15024214|gb|AAK79256.1|AE007641_2 Uncharacterized conserved protein, ortholog of YQEU B.subtilis [Clostridium acetobutylicum ATCC 824] gi|4104515|gb|AAD02055.1| unknown [Clostridium acetobutylicum DSM 1731] gi|325508699|gb|ADZ20335.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 250 Score = 240 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV GD ++ VLR+K G+ + + + E+L +I + K Sbjct: 1 MHKFFVGAENICDNTAYIYGDDVKHIYKVLRLKVGEKVSINDCNSHEFLGEIEQINKENV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QN 119 +E + +V K ++D ++QK+ E+G+ I P+IT+ ++ Sbjct: 61 KVKIIENLDINNESPLNVYLYQGFPKAAKMDIIVQKNTELGIREIIPLITQRVVVKNEKS 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR AA+Q +P + + ++ ++ E + Sbjct: 121 ELKKVDRWNRIAFEAAKQSKRSVIPKVKDIASFNSAIEELKEMDLVLVPYENQEKVGMKK 180 Query: 180 KLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 AI I NVAI+IGPEGG+ E E L + ++LGPRILR++TA + +LV Sbjct: 181 VAAAIEKNKIKNVAIVIGPEGGFEETEIEELKKIGAY-IITLGPRILRTETAGLVCTSLV 239 Query: 238 QAICGD 243 D Sbjct: 240 MYELSD 245 >gi|114567095|ref|YP_754249.1| hypothetical protein Swol_1575 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338030|gb|ABI68878.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 248 Score = 240 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 105/246 (42%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 + R FV +Q ++ VLR+K GD + +F+G E+ ++ + I Sbjct: 1 MPRFFVSADNIKGNSVLIDEEQTRHIEKVLRLKSGDIVKVFDGNGNEYQVRLQEKKQKIL 60 Query: 66 -RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ ++ ++ + ++ ++D++IQK+VE+G+ ++ P+ + ++ + Sbjct: 61 QAEILAQETTAEDLAINLTLVQGIARSEKMDFIIQKAVELGVRSLIPLQSEHSVARFDKE 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSEN 176 + R + A +QC +P + P L+ ++ + Sbjct: 121 KEGKKIKRWQKIAQEACKQCGRNHIPEVKPILDFPALMAQIGDKPALLCYEQEREAYFRT 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + ++IGPEGG+ E E + LGPR LR++TA++ A + Sbjct: 181 LLREQRENFCTQGLFLIIGPEGGFSPAEVEIARRQGWFIA-GLGPRTLRTETASLLACGI 239 Query: 237 VQAICG 242 + G Sbjct: 240 IMYEYG 245 >gi|323443249|gb|EGB00867.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus O46] Length = 250 Score = 240 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 ITVDLKEKQNINTELPVDVTICSGLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|313618886|gb|EFR90752.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua FSL S4-378] Length = 255 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV++ L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLLLQEVN-AKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|16800575|ref|NP_470843.1| 16S ribosomal RNA methyltransferase RsmE [Listeria innocua Clip11262] gi|16413980|emb|CAC96738.1| lin1507 [Listeria innocua Clip11262] Length = 255 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV++ L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSVLTNLFQTMKPGQSVLCIFGPEGGISEKELLLLQEVN-AKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|309783107|ref|ZP_07677826.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA] gi|308918215|gb|EFP63893.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA] Length = 249 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R FVD PL T ++ HVLR+ GD++ LF+G E+ +++ + K Sbjct: 3 LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINKRDA 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + ++ T+ + +++D++I+K+VE+G+ A+ P+ T + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERAVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176 + + +A EQC +P + P +TL L +++ + S Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVAPVSTLREWLAAARSTDAPRVLLSPRGTQSLT 181 Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +LIGPEGG +E+ S F+ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|113869103|ref|YP_727592.1| 16S ribosomal RNA methyltransferase RsmE [Ralstonia eutropha H16] gi|113527879|emb|CAJ94224.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 250 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 15/250 (6%) Query: 8 KRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R FV D L ++ + VLR+ GD + LF+G+ G + + +GK Sbjct: 3 PRFFVGGTDTVLAAESDFPLPEPVVRH-VQVLRLVPGDAMTLFDGRGGSHAATLVELGKR 61 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + V +++D++I+K+VE+G+ AI+P+ + Sbjct: 62 HALARIGAHDAAEAEPPFRVTLAQGLAGGDKMDWLIEKAVELGVTAIQPLQASRSVVRLS 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSE 175 + H + +A EQC LP + P E L +++ + S Sbjct: 122 GERAHKRHAHWQALVQAACEQCGRNRLPEVAPVANFETWLAQSAAGGARLLVSPRATHSL 181 Query: 176 NS-LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + + V +LIGPEGG +E++ + F T +SLGPRILR++TA +A + Sbjct: 182 PAFIAEQRESLLAGGVTLLIGPEGGLAPDEEQAARQVGF-TGVSLGPRILRTETAGLACL 240 Query: 235 ALVQAICGDW 244 A + A+ G + Sbjct: 241 ATLNALLGGF 250 >gi|188588657|ref|YP_001920258.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum E3 str. Alaska E43] gi|188498938|gb|ACD52074.1| conserved surface protein [Clostridium botulinum E3 str. Alaska E43] Length = 254 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 14/250 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F T+GK GD ++ VLR+ EG+ ++L N + E+L +I VGK Sbjct: 1 MHKFFTSACNITGTEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 +E S + + ++ K ++D ++QK E+G+ P+IT + Sbjct: 61 IVNILEELSTNNESRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177 ++R+ + AA+Q +P + L I+ E G ++ Sbjct: 121 FKKLERLNRIALEAAKQSKRSIIPNVREVVEFNEALNELQRLDLILVPYENAENFGFKSL 180 Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +++L + I N+ ++IGPEGG+ E ETL ++LG RILR++TA A Sbjct: 181 VKELSDKNVDLNSIENIGVVIGPEGGFEESEIETLK-HKGAYIITLGNRILRTETAGFVA 239 Query: 234 MALVQAICGD 243 +L+Q D Sbjct: 240 TSLIQYELAD 249 >gi|225387763|ref|ZP_03757527.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme DSM 15981] gi|225046138|gb|EEG56384.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme DSM 15981] Length = 247 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 113/245 (46%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + FV+ Q + +G +++ +VLRM+ G+ L +G + L + + +S+ Sbjct: 1 MHHFFVEPEQIRDGQVRITGPDVNHMKNVLRMRPGEEF-LVSGGGNDLLCAVESLDVQSV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR------YTQN 119 ++ + S+ + + K+++++ +IQK+VE+G I PV T+ + Sbjct: 60 GARILGEQPSRELPAGIWLFQGLPKSDKMELIIQKAVELGAAGIIPVATKNAVVKLDAKK 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCGSEN 176 + R + SAA+Q +P I + + + D + +++ + G E Sbjct: 120 EESRLRRWQAIAESAAKQSKRSLVPEIGRVLSFKEAVARMDRDGFDLRLLPYENERGMEA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + E + +A+ IGPEGG+ E S + P+SLG RILR++TA +A +A Sbjct: 180 TREAFTRVREAKRIAVFIGPEGGFDETEVNLARSAD-ILPVSLGKRILRTETAGLAVLAA 238 Query: 237 VQAIC 241 + Sbjct: 239 LMLRL 243 >gi|229825010|ref|ZP_04451079.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC 49176] gi|229790757|gb|EEP26871.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC 49176] Length = 246 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 11/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 + F+D +G +++ +VLRMKE D I L G + + IS + Sbjct: 1 MSNFFIDSGNIDGENAYVTGSDVNHIKNVLRMKESDEIKLSAGDGLLYTATISEFLPDRI 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 + ++ + + + K ++++ +IQK+VE+G+ I PV+ + T Sbjct: 61 VCRIIDCEGGKSELPAKIVLFQGLPKKDKMELIIQKAVELGVSEIVPVMMKRTIVKFEDN 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 + ++R RT +++AA+Q +P + T +K + ++ + G + Sbjct: 121 KKEQKKLERWRTISLTAAKQSGRAVVPEVSDFITFNEAVKRAEGLEYNLIPYENEKGMDK 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + E + + + ++ I IGPEGG +E E + P+SLG RILR++TA +A +++ Sbjct: 181 ARELIKEVKNKKSIGIFIGPEGGISEDELELAINAG-AKPISLGNRILRTETAGLALVSV 239 Query: 237 VQAI 240 + Sbjct: 240 IAFE 243 >gi|33592148|ref|NP_879792.1| hypothetical protein BP0998 [Bordetella pertussis Tohama I] gi|33571792|emb|CAE41299.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381564|gb|AEE66411.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS] Length = 246 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 9/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R + D L H+ VLR++ G ++LF+G GE+ + + GK+ Sbjct: 3 LPRFYCDARLAPGECVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAW 62 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ + R + + +++D++++K+VE+G + P+ + + Sbjct: 63 AQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGAR 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +AAEQC L + P L L + + Sbjct: 123 AEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAPGAALRLLCHPE-AELDLAG 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A ++ +L+GPEGG+ EE E + V + GPR+LR++TA +A +A V A Sbjct: 182 ALARHAAHDDICLLVGPEGGWSDEELEQARAAG-VQAVRFGPRVLRTETAGIALIAAVSA 240 Query: 240 ICG 242 I G Sbjct: 241 IRG 243 >gi|46907698|ref|YP_014087.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes serotype 4b str. F2365] gi|47093476|ref|ZP_00231239.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 4b H7858] gi|226224071|ref|YP_002758178.1| hypothetical protein Lm4b_01480 [Listeria monocytogenes Clip81459] gi|254824471|ref|ZP_05229472.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254932655|ref|ZP_05266014.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254991899|ref|ZP_05274089.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes FSL J2-064] gi|46880967|gb|AAT04264.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes serotype 4b str. F2365] gi|47018152|gb|EAL08922.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 4b H7858] gi|225876533|emb|CAS05242.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584214|gb|EFF96246.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593708|gb|EFG01469.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|328465513|gb|EGF36742.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes 1816] gi|332311912|gb|EGJ25007.1| Protein YqeU [Listeria monocytogenes str. Scott A] Length = 255 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++ V+RMKE D + + ++ I+ + Sbjct: 1 MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 F V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|33595836|ref|NP_883479.1| hypothetical protein BPP1163 [Bordetella parapertussis 12822] gi|33600365|ref|NP_887925.1| hypothetical protein BB1379 [Bordetella bronchiseptica RB50] gi|33565915|emb|CAE36464.1| conserved hypothetical protein [Bordetella parapertussis] gi|33567964|emb|CAE31877.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 246 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 9/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R + D L + H+ VLR++ G ++LF+G GE+ + + GK+ Sbjct: 3 LPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAW 62 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ + R + + +++D++++K+VE+G + P+ + + Sbjct: 63 AQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGAR 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + +AAEQC L + P L L + + Sbjct: 123 AEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAPGAALRLLCH-PQAELDLAG 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A ++ +L+GPEGG+ EE E + V + GPR+LR++TA +A +A V A Sbjct: 182 ALARHAAHDDICLLVGPEGGWSDEELEQARAAG-VQAVRFGPRVLRTETAGIALIAAVSA 240 Query: 240 ICG 242 I G Sbjct: 241 IRG 243 >gi|254827758|ref|ZP_05232445.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258600138|gb|EEW13463.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 255 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++ V+RMKE D + + ++ I+ + Sbjct: 1 MQRYFVTNELENDNDTLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 F +++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VFLNVLKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|194290708|ref|YP_002006615.1| 16S ribosomal RNA methyltransferase rsme [Cupriavidus taiwanensis LMG 19424] gi|193224543|emb|CAQ70554.1| conserved hypothetical protein, DUF558 [Cupriavidus taiwanensis LMG 19424] Length = 253 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 18/253 (7%) Query: 8 KRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R FV D L ++ + A VLR+ GD I LF+G+ G + + +GK Sbjct: 3 PRFFVGGADAVLAAESDFPLPEPVVRH-AQVLRLAPGDAITLFDGRGGSHAATLVELGKR 61 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + V +++D++I+K+VE+G+ AI+P+ + Sbjct: 62 HALARIGAHDAAEAEPPFRVTLAQGLAGGDKMDWLIEKAVELGVAAIQPLQASRSVVRLS 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETC 172 + + +A EQC LP + T L+ L + +++ + Sbjct: 122 GERAQKRQSHWQALVQAACEQCGRNRLPAVAEVTNLDTWLARVAQSGNGGTRLLLSPRAA 181 Query: 173 GSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + +L A + + V +LIGPEGG EE++ F T +SLGPRILR++TA + Sbjct: 182 QALPALVAERREALLADGVTLLIGPEGGLAPEEEQAALQAGF-TGVSLGPRILRTETAGL 240 Query: 232 AAMALVQAICGDW 244 A +A + A+ G + Sbjct: 241 ACLATLNALLGGF 253 >gi|167571263|ref|ZP_02364137.1| hypothetical protein BoklC_15582 [Burkholderia oklahomensis C6786] Length = 253 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 18/253 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S + R FVD L D + VLR+ GD + LFNG G++ ++ + K Sbjct: 6 SAIPRFFVDAELQSDATLALPADVARH-VQVLRLAAGDAVTLFNGAGGQYRAEFVELDKR 64 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + +++D++I+K+VE+G AI P+ T Sbjct: 65 AALVRIGAFTPADVEAPYRITLAQGIAGGDKMDWLIEKAVELGAAAIAPLSTARGVVRLS 124 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADET 171 + + + ++ EQC +P + P + L +++ + Sbjct: 125 GERAQKRVAHWQGVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELRLMLSPRA 184 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L + V +LIGPEGG +E+E F + + LGPR+LR++TA + Sbjct: 185 SVG---FADLPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFAS-ILLGPRVLRTETAGI 240 Query: 232 AAMALVQAICGDW 244 A +A + A G W Sbjct: 241 AMLAALAARWGGW 253 >gi|194366854|ref|YP_002029464.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas maltophilia R551-3] gi|194349658|gb|ACF52781.1| protein of unknown function DUF558 [Stenotrophomonas maltophilia R551-3] Length = 245 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 12/246 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R +D L + ++L V+R++EGD +LFNG ++ + ++ GK Sbjct: 2 RVTRCPIDLALHSGQTVTLPEETANHLVRVMRLREGDTCVLFNGDGHDYSATLTVAGKRE 61 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 ++ +++ T+ + + + ++D ++QK+ E+G+ AI PV T+ Sbjct: 62 VQVRIDAVQAIDTESPLAITLLQGIARGEKMDLILQKATELGVAAIVPVNAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + SA Q +P + PP +L + + D + Sbjct: 122 ARAEKRVAHWNNVVTSACGQSGRARIPQVGPPLSLAQAAAALPVDTLRLTLD--PQGAHR 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L L A A + I IGPEGG+ +++ L + F L LGPRILR++TA +AA+A + Sbjct: 180 LSTLDA-APGGGIVIAIGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAAL 237 Query: 238 QAICGD 243 QA GD Sbjct: 238 QARLGD 243 >gi|254852095|ref|ZP_05241443.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300765613|ref|ZP_07075592.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] gi|258605395|gb|EEW18003.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300513714|gb|EFK40782.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017] Length = 255 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++ V+RMKE D + + ++ I+ + Sbjct: 1 MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 F V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VFLNLVKWLKEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|317133522|ref|YP_004092836.1| protein of unknown function DUF558 [Ethanoligenens harbinense YUAN-3] gi|315471501|gb|ADU28105.1| protein of unknown function DUF558 [Ethanoligenens harbinense YUAN-3] Length = 239 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 15/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + R F +T G +G ++A VLRM+ GD + + + ++L +I S ++ Sbjct: 1 MPRFFTQD--VDETHGCITGADAAHIARVLRMRPGDKLTVCDLAGSDYLCEILSAAPDAV 58 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 +V E + V K ++++ ++QKSVE+G+ + PV+T + Sbjct: 59 ELRVLEKRPTIAEPSVHVTLFQGLPKADKMELIVQKSVELGVSRVVPVLTARCVSRPDRA 118 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + AA+Q LP + + + V E G + Sbjct: 119 TLAKKTARWQKIAAEAAKQSGRGRLPVVGEAVDFSAAARELAGMERGVLFYEKGGDAH-- 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + + + IGPEGG+ EE L V +LGPRILR++TA + ++++ Sbjct: 177 --LGVWNGVREIGVCIGPEGGFADEEVALAGELG-VRVCTLGPRILRTETAPLCVLSVIM 233 Query: 239 AICG 242 G Sbjct: 234 YATG 237 >gi|15836795|ref|NP_297483.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa 9a5c] gi|9104989|gb|AAF83003.1|AE003872_14 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 244 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 14/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R V+ PL + + ++L VLR+ EGD +LFNG ++L+++ G+ Sbjct: 2 RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 ++E S + + + + ++D + QK+ E+G+ AI PV T + Sbjct: 62 AWARIEGVSEVCNESPLAITLVQAIARGEKMDLIAQKATELGVVAIVPVDTERSGVRLDS 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176 + + ISA EQC +P + P L+ L + +++ ++ + Sbjct: 122 ERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQALPEILHPDTLRLILDPKSEHRLS 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L +L +A V I IGPEGG+ + E L F+ SLGPRILR++TA + A+A+ Sbjct: 182 TLSRLTPVA----VTIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAV 236 Query: 237 VQAICGD 243 +QA GD Sbjct: 237 LQAQLGD 243 >gi|313623733|gb|EFR93877.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua FSL J1-023] Length = 255 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTNELENDNDTLTITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEDE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVVPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSVLASLFQTMKPGQSVLCIFGPEGGISEKELLLLQEVN-AKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|291531082|emb|CBK96667.1| RNA methyltransferase, RsmE family [Eubacterium siraeum 70/3] Length = 257 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 14/244 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D + + ++A VLRM++GD ++ + ++L ++S Sbjct: 17 PRFFSDTIDENDRIIYMNDEDSKHIAQVLRMRKGDKAIICDKNGHDYLCELSSAENKSAI 76 Query: 68 K---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ + ++ + K ++LD+++QK+ E+G I P +++ + Sbjct: 77 EFGILDKKDNLAEPDVEITLFQAVPKNDKLDFIVQKATELGAMRIVPFLSKRCVSRPDTK 136 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ A++QC +P + P T + + + D + + E G + S Sbjct: 137 SADKKVQRLQRIAYEASKQCGRGKIPGVMPFTDFKSAVNSIDSDTLPIIFYECGGKKLSE 196 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L +A+ IG EGG+ EE + S T + LG RILR +TA VAA+A++ Sbjct: 197 LDLS----YKKIAVFIGSEGGFEKEEVDYALSKG-ATAVHLGERILRCETAPVAALAVLM 251 Query: 239 AICG 242 + G Sbjct: 252 NLTG 255 >gi|333029175|ref|ZP_08457236.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides coprosuis DSM 18011] gi|332739772|gb|EGJ70254.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides coprosuis DSM 18011] Length = 231 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 9/236 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + + I + D+ + + VLR+ EGD+I L +GK + ++I+ K Sbjct: 1 MPIFYTP---NIDQIKELPSDEAKHCSRVLRLTEGDHITLTDGKGNFYEAEITLTTPKKC 57 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 F + + + P K +R +++ +K+ E+G + ++++ Sbjct: 58 LFNILETHTPTPPKVYIHLAMGPTKNMDRNEWVAEKATEIGFNEFTFLNCQFSERKIIKT 117 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DRV +SA +Q TLP + T + + N Q A ++ L++L+ I Sbjct: 118 DRVEKILVSAMKQSKRATLPKLNEMTPFKTFITQ-PFNGQKFIAHCYKENQELLKELYTI 176 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N ILIGPEG + EE + F P+SLG LR++TAA+ A + + + Sbjct: 177 --GENALILIGPEGDFSPEEIQLALDNGF-QPISLGDSRLRTETAAIFACSTINIL 229 >gi|260589081|ref|ZP_05854994.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583] gi|260540501|gb|EEX21070.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583] Length = 246 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ Q SG +++ +VLRMK + IL+ +G+D E+ I +G+ Sbjct: 1 MYRFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEI 60 Query: 67 FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 Q S + K+++++ +IQK+VE+G+ + PV ++ + Sbjct: 61 LAHIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVA---SKRAVVKL 117 Query: 125 D---------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGS 174 D R + + SAA+Q + +P I + + + ++F E G Sbjct: 118 DKKKEEKKITRWQAISESAAKQSKRMYVPEITNVMSFQQAVDYAGKLDIVLFPYELADGM 177 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + E + I +V I IGPEGG+ E ++LG RILR++TA + + Sbjct: 178 KKTKEIIGKIKPGQSVGIFIGPEGGFEESEVALAKEKADAQVITLGKRILRTETAGLTVL 237 Query: 235 ALVQAIC 241 A++ Sbjct: 238 AILMYTL 244 >gi|23016538|ref|ZP_00056293.1| COG1385: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 254 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 22/247 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL + DQ HYLA V+R + G+ +LLFNG DGEW ++I+ + K+ Sbjct: 11 RLFVDAPLSEGVAVALTRDQTHYLASVMRAELGEMVLLFNGTDGEWAARIAALPKAGAAL 70 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V E Q+R Q + D+ + +P+K +R D +++K+ E+G+ + PV TR T N DR+ Sbjct: 71 VPERQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSLLMPVFTRRTNAGRVNTDRL 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R + I AAEQC+ L++P + P L+ +L +W + ++F DE L+ + Sbjct: 131 RAHLIEAAEQCERLSVPQLSEPCPLDKVLADWPTDRILLFLDEGGSGIPLAHVLNGM-PG 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMALV 237 +A+L+GPEGG+ +EE+ + S F + LGPRILR +V Sbjct: 190 EKLALLVGPEGGFDAEERRLIGSKSFARAVGLGPRILRAETAAIAALA----------VV 239 Query: 238 QAICGDW 244 QA+ GDW Sbjct: 240 QALTGDW 246 >gi|116872901|ref|YP_849682.1| hypothetical protein lwe1485 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741779|emb|CAK20903.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 255 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 14/248 (5%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++ V+RMKE D + + ++ I+ + Sbjct: 1 MQRYFVTNELENDHDTIFITGENFHHITRVMRMKEADQVFIVFPSKKTCVATITAINDEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 V++ + ++ K ++L+ +IQKS E+G P + Sbjct: 61 VVLNLVKWLEENTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVAKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P + + + L+ N H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVQYAASFKELMLNHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG +E L T LGPRILR++TA + Sbjct: 181 DSALPSLFQTMKKGQSVLCIFGPEGGISEKELILLQDAN-TTLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAIC 241 ++ Sbjct: 240 LSAASFYF 247 >gi|284801857|ref|YP_003413722.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578] gi|284994999|ref|YP_003416767.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923] gi|284057419|gb|ADB68360.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578] gi|284060466|gb|ADB71405.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923] Length = 255 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTSELENDNDTLAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|315645962|ref|ZP_07899083.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453] gi|315278723|gb|EFU42037.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453] Length = 256 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 17/252 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + + +GD ++ V+R + GD +++ +G E + +I + + Sbjct: 1 MQRYFVTPAQFEGDRVEITGDDARHITKVMRGRLGDKLIVSDGVSREAMVEIESLEAASV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 F V +S + +Q + K ++++ +IQK E+G + P ++ T + Sbjct: 61 FAVVIESMEMRNEPRLQVTIAQSLPKGDKMETVIQKCTEIGAVSFAPFLSERTIVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P + P + LL + + F E Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRVPSVEQPLSWRNLLAAFSSYDAVCFCYEKEHGSQLR 180 Query: 179 EKL-----HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + L A+ + + +++GPEGG+ EE V+ + LG RILR +TA Sbjct: 181 DVLKPFVEQALPESGSQACLLLVVGPEGGFTEEECRAAEDAGAVS-VGLGRRILRCETAG 239 Query: 231 VAAMALVQAICG 242 + A+A G Sbjct: 240 MTALACALYESG 251 >gi|322417811|ref|YP_004197034.1| hypothetical protein GM18_0269 [Geobacter sp. M18] gi|320124198|gb|ADW11758.1| protein of unknown function DUF558 [Geobacter sp. M18] Length = 246 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ F+ + +G+ Y ++A VLR+K+G + L + I VG K++ Sbjct: 1 MRSFFLGDNTVCDGEATVTGELYRHMARVLRLKQGAEVELIDADGRRHAGVIEEVGAKAL 60 Query: 66 RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 ++ S ++ V K +LD ++QK E+G+ + R V+ Sbjct: 61 TVRITVSSAPPREEPGLQVTLYQGLPKGEKLDLILQKCTELGVAEVVTFDAARSVVKLRG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + T R AA Q T P + TL+ +LK+ H +++ E Sbjct: 121 EKTASKQARYEKIVQEAARQSGRCTPPRVAIGGTLKEVLKDAGHTVKLLLW-EGEEKTTL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L +VA+++GPEGG +EE E + F TP++LG RILR++TA +A ++++ Sbjct: 180 RDCLGKYEAPESVAVVVGPEGGLSAEEVEQALACGF-TPVTLGKRILRTETAGLAMISIL 238 Query: 238 QAICGD 243 Q GD Sbjct: 239 QFHWGD 244 >gi|118594425|ref|ZP_01551772.1| hypothetical protein MB2181_02115 [Methylophilales bacterium HTCC2181] gi|118440203|gb|EAV46830.1| hypothetical protein MB2181_02115 [Methylophilales bacterium HTCC2181] Length = 246 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 19/250 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +KR + L + S H+ +V+R+K D I+LFN ++ ++I + K+ R Sbjct: 1 MKRFYHPDALELDQIANLSKVAAHHATNVMRLKLSDKIILFNNDVYDFGAEIIRISKN-R 59 Query: 67 FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +V QS+ ++ ++ I S T ++D++IQKSVE+G+ I P+ ++ + Sbjct: 60 VEVVIQSKIANRKDSDLKIRLIQSISSTEKMDWIIQKSVELGVHTIVPIFSQRSIIKLNN 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCG 173 + + SA EQC +P I+ P + N + +++ + Sbjct: 120 DRAEKKLSHWKQIIQSACEQCGRSKVPEIFIPKKFDAFWSNETISNKDHLKLILSPLA-- 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +NS + I + I+IGPEGG+ EE F+ P +GPRILR++TA +A Sbjct: 178 -KNSFRTISTIKPSA-IDIMIGPEGGFSEEEVVNAEKNGFI-PFEIGPRILRTETAPLAM 234 Query: 234 MALVQAICGD 243 +AL+Q GD Sbjct: 235 LALLQYKYGD 244 >gi|40889937|pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein gi|40889938|pdb|1VHK|B Chain B, Crystal Structure Of An Hypothetical Protein gi|40889939|pdb|1VHK|C Chain C, Crystal Structure Of An Hypothetical Protein gi|40889940|pdb|1VHK|D Chain D, Crystal Structure Of An Hypothetical Protein Length = 268 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 16/248 (6%) Query: 7 LKRLFVD-FPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L+R F++ I+ +G++ H++ +V R EGD I+ + E ++ V K Sbjct: 3 LQRYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSK 62 Query: 64 SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 +E+ + ++ V K ++L+++IQK E+G A P + Sbjct: 63 DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 122 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + + + LL+ + V A E + Sbjct: 123 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQ 182 Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + AI ++ I+ GPEGG E E L VT LGPRILR++TA + Sbjct: 183 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPL 241 Query: 232 AAMALVQA 239 A++ + Sbjct: 242 YALSAISY 249 >gi|83746774|ref|ZP_00943822.1| surface protein [Ralstonia solanacearum UW551] gi|207744320|ref|YP_002260712.1| hypothetical protein RSIPO_02511 [Ralstonia solanacearum IPO1609] gi|83726543|gb|EAP73673.1| surface protein [Ralstonia solanacearum UW551] gi|206595725|emb|CAQ62652.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 117/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R ++D PL T ++ HVLR+ GD++ LF+G E+ +++ + + Sbjct: 3 LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINRRDA 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ T+ + +++D++I+K+VE+G+ AI P+ T + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAITPLQTERGVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176 + + +A EQC +P + P TTL L + +++ + S Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQSLT 181 Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +LIGPEGG +E+ + ++ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|167750969|ref|ZP_02423096.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702] gi|167656148|gb|EDS00278.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702] Length = 257 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D + + ++A VLRM++GD ++ + ++L ++S + Sbjct: 17 PRFFSDTIDENDRIIYMNDEDSKHIAQVLRMRKGDKAIICDKNGHDYLCELSSLENKNAI 76 Query: 68 K---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ + ++ + K ++LD+++QK+ E+G I P +++ + Sbjct: 77 EFGILDKKDNLAEPDVEITLFQAVPKNDKLDFIVQKATELGAVRIVPFLSKRCVSRPDAK 136 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ A++QC +P + P T + + + D + + E G + S Sbjct: 137 SADKKVQRLQRIAYEASKQCGRGKIPGVMPFTDFKSAVNSIDSDTLPIIFYECGGKKLSE 196 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L +A+ IG EGG+ EE + S T + LG RILR +TA VAA+A++ Sbjct: 197 LDLS----YKKIAVFIGSEGGFEKEEVDYALSKG-ATAVHLGERILRCETAPVAALAVLM 251 Query: 239 AICG 242 + G Sbjct: 252 NLTG 255 >gi|323440475|gb|EGA98187.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus O11] Length = 250 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 ITVDLKEKQNINTELPVDVTICSGLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 + + Sbjct: 239 LGAISYE 245 >gi|88798495|ref|ZP_01114079.1| hypothetical protein MED297_05539 [Reinekea sp. MED297] gi|88778595|gb|EAR09786.1| hypothetical protein MED297_05539 [Reinekea sp. MED297] Length = 245 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 15/238 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 P I + + +L VLR+K+G +I +FNG+ + ++++ VGK + Sbjct: 13 PGLIDQAVELPSSVFQHLIKVLRLKDGADIQVFNGRGDRFRAELTEVGKKQASARLLEQL 72 Query: 75 SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 T + + + K +R DY +QK+ E+G+ +I P+ + + + M Sbjct: 73 DATPEPQLHTHLGLVMSKGDRFDYALQKATELGVTSITPLTSEHCDLRLNAERQTKKMAH 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + SA EQC T+P +YP L ++ D + Q++ + E Sbjct: 133 WQGVIESACEQCYRDTVPILYPVRALRDWVEIQDSDVQLILHTAAQAPDWPEE------S 186 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +V+ LIGPEGG +E + F++ LGPRILR++TA V ++L+Q GD+ Sbjct: 187 PQSVSFLIGPEGGLSDDEVQWSLKNDFMS-WQLGPRILRTETAPVVMLSLLQNKWGDF 243 >gi|297170744|gb|ADI21766.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium HF0130_22O14] Length = 246 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 20/253 (7%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ ++R VD K+ + +G+Q HY+ VLR++ GD ++LF+G EW +KI Sbjct: 1 MR-KKRIQRFHVDQIDNSKSHLEIAGEQSHYVTRVLRLQTGDRMILFDGSGSEWTAKIID 59 Query: 61 VGKSIRFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 K R +E + R+ + ++ I S ++ R+D ++QKS E+G+ I PV + T Sbjct: 60 T-KRNRLLLELEERATPDRESPINLTLIQSISRSQRMDLVMQKSTELGVTRIVPVFSTNT 118 Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADE 170 ++ R ISA+EQ +P + P LE LK + + I + Sbjct: 119 IVKMNEDKIEKKINHWRNILISASEQSGRTKIPDLISPIQLETECLKRYKSDLSIF--YD 176 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 T G ++ + + ++ +IGPEGG+ +EK+ ++ S GPR+LR++TA Sbjct: 177 TTGKDS-----YDANNPKDITAVIGPEGGFTEDEKQIAIDAGYMVMQS-GPRLLRTETAP 230 Query: 231 VAAMALVQAICGD 243 + A++++Q + GD Sbjct: 231 IMALSILQYLYGD 243 >gi|332293484|ref|YP_004432093.1| protein of unknown function DUF558 [Krokinobacter diaphorus 4H-3-7-5] gi|332171570|gb|AEE20825.1| protein of unknown function DUF558 [Krokinobacter diaphorus 4H-3-7-5] Length = 234 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 6/230 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + + D+ ++ VLR K GD I L NG + + ++ Sbjct: 1 MQLFYSETLTIDSDTYTLPKDESKHVIRVLRKKTGDAIHLTNGHGYLFNAIVAEENPNKC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 R ++E S + + + +P K +R ++ ++K+ E+G+ I P++ +++ Sbjct: 61 RLQIESYSYQEPRNYKLHLAVAPTKLNDRFEWFLEKATEIGITEITPLLCDHSERKVIKE 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R SA +Q LP + T+ + + +H + E E+ + L Sbjct: 121 ERFMKIIQSAMKQSLHYHLPKMNALTSFSDFVGHQNHEDTFIAHCEDLKKESLKDYL--- 177 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + ILIGPEG + E E + P+SLG LR++TAA+ A Sbjct: 178 KPNKSYTILIGPEGDFSPAEIELALKQG-IIPVSLGKSRLRTETAAIVAC 226 >gi|167754795|ref|ZP_02426922.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402] gi|237735918|ref|ZP_04566399.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705627|gb|EDS20206.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402] gi|229381663|gb|EEO31754.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 245 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 9/241 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ L K Q D H++ V+R GD I+ + + I + + Sbjct: 1 MQRYFINEDLTSKQQLILPDDDLHHVKKVMRNINGDEIICIDNAGQVYYGVIEDIEIGLV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + + ++ +++ K ++ + ++QK+ E+G+ I P+ T+ Q Sbjct: 61 KIDKRLEENNELDVEITLVYALPKGDKFELVLQKATELGVKRIVPIQTKRCVVKMDEQKF 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--SL 178 + R R AAEQ +P I LE L + + + F + E+ Sbjct: 121 AKKITRYRKILKEAAEQSWRNFIPEITNVIKLEQLDQYLGDHNLVAFEELAKQGEHMVLK 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L ++ + I++G EGG+ +E E ++ L + SLG RILRS+TA + ++++ Sbjct: 181 QTLDQLSSGDKITIVVGSEGGFELDEIEMMNKLG-IKACSLGKRILRSETAPLYFLSVIG 239 Query: 239 A 239 Sbjct: 240 Y 240 >gi|154504512|ref|ZP_02041250.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149] gi|153794994|gb|EDN77414.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 117/244 (47%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++ FV G +++ HVLRMK G+ + + + + ++L +I + + + Sbjct: 1 MQNFFVYDSQVQGENIYIEGTDVNHIVHVLRMKVGEEVSVHDDVNRKYLCRIEKLLEERV 60 Query: 66 RFKVEYQSRSQTKQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + Q S T+ S Y K ++++++IQK VE+G+ AI PV T+ + Sbjct: 61 VLSIVEQQESDTELSCPIYLFQGLPKGDKMEWIIQKCVELGVHAIVPVATKRAVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 ++R SAA+Q +P + P + L+ + +++ ++ G + Sbjct: 121 KAQKKVNRWNAIAESAAKQSGRGIVPEVLPVMKWKEALEYARQLDVKMIPYEKAAGINAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +++ +V I IGPEGG+ E E + V P++LG RILR++TA + ++++ Sbjct: 181 KQLIASVSFGQSVGIFIGPEGGFEEAEVEAAKEIGAV-PVTLGRRILRTETAGMTILSIL 239 Query: 238 QAIC 241 Sbjct: 240 MYHL 243 >gi|327440958|dbj|BAK17323.1| uncharacterized protein [Solibacillus silvestris StLB046] Length = 247 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 15/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD SG+ +++ V+RM G+ I++ + + ++ +I + + +R Sbjct: 1 MQRYFVDTVEKDMDHFIISGENARHISKVMRMTAGEEIIVVH-DNVAYVCEIIELDQDVR 59 Query: 67 FKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K + S V K ++L+ + QK+ E+GM A+ P + + Sbjct: 60 VKKTGTTIPSPEMPVQVDIACGLPKGDKLELIAQKATELGMHALIPFAAERSIVKWDDKK 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL- 178 N +R++ + AAEQ +P + P + + L++ + + + ADE + Sbjct: 120 AKKNQERLQKISQEAAEQSHRTYVPDVVQPISFKQLVQTFSNYDAVYIADEEDAKLANRT 179 Query: 179 ---EKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +KL ++ P + + GPEGG E T +SLGPRILR++TA + A Sbjct: 180 TFKQKLQSLNKENTPRILCIFGPEGGISRHESAVFLEAGAQT-MSLGPRILRAETAPLYA 238 Query: 234 MALVQAIC 241 ++ + Sbjct: 239 LSAISYEF 246 >gi|221140003|ref|ZP_03564496.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|269941067|emb|CBI49451.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|302751407|gb|ADL65584.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus str. JKD6008] gi|329314253|gb|AEB88666.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] Length = 250 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKAAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|295092931|emb|CBK82022.1| RNA methyltransferase, RsmE family [Coprococcus sp. ART55/1] Length = 252 Score = 237 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R FVD I T +G +++ +VLR+K G I + NG+ ++ IS +G+ Sbjct: 1 MNRFFVDVDGRDIGTDISITGGDVNHIKNVLRLKVGQEITVSNGRGRDYTCSISELGRDE 60 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--- 120 + VE + + +V K++++D ++QK VE+G+ I PV T T Sbjct: 61 VLCHVEDVNDNFAELPVEVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVFTARTIVKLDA 120 Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176 +R R SAA+Q +P I P T ++ + I+ +E G Sbjct: 121 KKAAKKTERCRIIAESAAKQSGRGIVPEITEPVTFAQAIEMAKTLDMNIIPYEEAEGLAK 180 Query: 177 SLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S + + + ++ + IGPEGG+ EE E + ++LG RILR++TA +A Sbjct: 181 SRQIIADVTAPSSARRSLGVFIGPEGGFAREEVEQAMAAG-AECITLGHRILRTETAGLA 239 Query: 233 AMALVQ 238 M+++ Sbjct: 240 VMSIIM 245 >gi|254515811|ref|ZP_05127871.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR5-3] gi|219675533|gb|EED31899.1| PAS/PAC sensor signal transduction histidine kinase [gamma proteobacterium NOR5-3] Length = 245 Score = 237 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 21/248 (8%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F L + ++A LRM+ D + LFNG E I+ + K R Sbjct: 4 PRFFTAQALSEGASIVLEKEPSRHIAKALRMRVEDTLCLFNGNGVEARGLITAIDKD-RV 62 Query: 68 KVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V S+ D I + + +R+D ++QK+ E+G+ I P+I+ T + Sbjct: 63 SVSLHDLSEPPRESPLDTVLIIALSRGDRMDTVVQKATELGVSEIWPMISERTGVRLDGE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSE 175 + ISA EQC LP I P + L D + ++V G+ Sbjct: 123 RLSKKQEHWGRVAISACEQCGRNRLPLIAAPVSYAETLSRAAQQDASLRLVLHP--LGNA 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + ++ +L+GPEGG +E F T LGPRILR++TA +A +A Sbjct: 181 EPLPE-----QCRSLIMLVGPEGGLSDQEVAGACDAGF-TAFQLGPRILRTETAPLAGLA 234 Query: 236 LVQAICGD 243 + QA GD Sbjct: 235 VAQARWGD 242 >gi|297539576|ref|YP_003675345.1| hypothetical protein M301_2406 [Methylotenera sp. 301] gi|297258923|gb|ADI30768.1| protein of unknown function DUF558 [Methylotenera sp. 301] Length = 244 Score = 237 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 12/244 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F L I K S + + LR+ GD I LFNG ++ ++ V KS Sbjct: 5 RFFSTEDLVIGATVKLSENAATHATRALRLNAGDLIHLFNGDGFDYACELIVVKKSEVIA 64 Query: 69 VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 Q+R ++ + +R+DY IQK+VE+G+ I+P+ T + + Sbjct: 65 KINASQARDTESPLNITLLQGISSGDRMDYSIQKAVELGVKQIQPIATERSVVKLSAERA 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++ + ISA EQC T+P + P TL L + + G++ E Sbjct: 125 EKRLEHWQNIVISACEQCGRATIPQVLAPKTLANWLSSNSASSATRILLNPIGAKRLAEL 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +LIG EGG E S F + + LGPRILR++TA A+A +Q++ Sbjct: 185 ---DKPSGEIQLLIGAEGGLSQAEINLALSQDFQSVI-LGPRILRTETAGPTAIATLQSL 240 Query: 241 CGDW 244 GD+ Sbjct: 241 WGDF 244 >gi|293400698|ref|ZP_06644843.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305724|gb|EFE46968.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 258 Score = 237 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 10/241 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ PL + + +Q H++ HV+RMK + I L +GK + + + + + Sbjct: 1 MQQYFLHKPLQVHDLVEMEPEQAHHIQHVMRMKPDEIIRLADGKGHMYYAHVVFRDHKVF 60 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V+ + T+ D+ IK + D+++QKS E+G+ I P + T + Sbjct: 61 ACVDEEMEDHTRTPVDMILAQGLIKKEKWDFLLQKSAELGVQRIIPFTSSRTVVKTKDEK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENS 177 R A EQC TL + P + L+K + + A E S + Sbjct: 121 VDKKRLRWNKILQEACEQCKRSTLVALDSPKSFAELIKASEDADVKLIAYERADVKSAHV 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L V I++G EGG+ +E L + F +SLG RILR++TAA++ +A + Sbjct: 181 KEVLQKYPAPHKVFIVVGCEGGFSEDEVIQLEEVGF-HRVSLGARILRAETAALSLLACI 239 Query: 238 Q 238 Sbjct: 240 S 240 >gi|329851437|ref|ZP_08266194.1| RNA methyltransferase, RsmE family protein [Asticcacaulis biprosthecum C19] gi|328840283|gb|EGF89855.1| RNA methyltransferase, RsmE family protein [Asticcacaulis biprosthecum C19] Length = 248 Score = 237 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 137/248 (55%), Gaps = 11/248 (4%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + RLF+ P + DQ YLA V+R+ D + +FNG+DGEW +++S VGK Sbjct: 1 MIRLFISETTPPFAEGLSVILNPDQSRYLAAVMRLSVDDTVSIFNGRDGEWGARLSEVGK 60 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 ++ + Q+R Q + IK + L+Y+++K+ E+G G I+ + TR T +H Sbjct: 61 KAVKLDLIEQTRPQPTGQGPILAVALIKRSALEYIVEKATELGAGTIQLLTTRRTNASHT 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----- 177 N++R+ + +AEQ + L +P I P L+ L +++F DE E + Sbjct: 121 NVERLVSIAKESAEQTERLDVPEILAPVKLDRFLAAA-AFDRLIFGDENSTHEGTRETLP 179 Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ L A + ILIGPEGG+ +E+ L P P++LGPRILR+DTAA++A+ L Sbjct: 180 LLQALKTTAAVERSVILIGPEGGFDDDERLALRGRPDCIPVNLGPRILRADTAAISALTL 239 Query: 237 VQAICGDW 244 QA+ GDW Sbjct: 240 YQAVVGDW 247 >gi|269469135|gb|EEZ80680.1| hypothetical protein Sup05_0073 [uncultured SUP05 cluster bacterium] Length = 238 Score = 237 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 15/241 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+ + L + H+L VLR +G NI LFNG + +K+ K Sbjct: 5 RLYQNTLLKVGDHLILDEYCSHHLIKVLRFPQGKNITLFNGDGINYSAKVISSKKKCEVL 64 Query: 69 VEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + + ++ ++ ++ K ++D++IQK+VE+G+ I P+++ + + Sbjct: 65 ILTKEQNLSESKLNLTLAQGIAKGEKMDFLIQKAVELGVNKIVPIMSEHCVVKLKGEKLT 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + A EQ +P + P TL L N I+ S + L Sbjct: 125 KRQLHWQKIVFGACEQSGRSIVPNVETPITLNDFLDQTTTNGFILHH-------RSTQTL 177 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + H+ ILIGPEGG +E E S + L LG R+LR++TA++ A+A +Q + Sbjct: 178 LELEHMNEATILIGPEGGLSEKEIEQATSSGY-QSLLLGSRVLRTETASLVAIANMQLLW 236 Query: 242 G 242 G Sbjct: 237 G 237 >gi|21283258|ref|NP_646346.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MW2] gi|49486412|ref|YP_043633.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MSSA476] gi|21204698|dbj|BAB95394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244855|emb|CAG43316.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|329733247|gb|EGG69584.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus 21193] Length = 250 Score = 237 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R F+D + + + + H++ +V+R G I+L +L +I+ + K Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|57651970|ref|YP_186474.1| hypothetical protein SACOL1634 [Staphylococcus aureus subsp. aureus COL] gi|87161276|ref|YP_494232.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195386|ref|YP_500190.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221692|ref|YP_001332514.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus str. Newman] gi|258450594|ref|ZP_05698656.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262049150|ref|ZP_06022027.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30] gi|262051237|ref|ZP_06023461.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3] gi|282920126|ref|ZP_06327851.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus A9765] gi|284024636|ref|ZP_06379034.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus 132] gi|57286156|gb|AAW38250.1| conserved hypothetical protein TIGR00046 [Staphylococcus aureus subsp. aureus COL] gi|87127250|gb|ABD21764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202944|gb|ABD30754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374492|dbj|BAF67752.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|257861752|gb|EEV84551.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259160874|gb|EEW45894.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3] gi|259162819|gb|EEW47384.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30] gi|282594474|gb|EFB99459.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus A9765] gi|315198727|gb|EFU29055.1| hypothetical protein CGSSa01_09404 [Staphylococcus aureus subsp. aureus CGS01] Length = 250 Score = 237 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|83309343|ref|YP_419607.1| 16S ribosomal RNA methyltransferase RsmE [Magnetospirillum magneticum AMB-1] gi|82944184|dbj|BAE49048.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 252 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 2/218 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFV+ PL + DQ HYLA V+R G+ +LLFNG+DGEWL++I+ + K+ Sbjct: 11 RLFVEAPLSAGMAVALTRDQTHYLASVMRAAVGELVLLFNGRDGEWLARIAALAKAGAAL 70 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V E Q+R Q + D+ + +P+K +R D +++K+ E+G+ + PV TR T N DR+ Sbjct: 71 VPESQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSRLWPVFTRRTNAGRVNADRL 130 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + AAEQC+ LT+P + P L+ +L W ++F DE G E L+ ++ Sbjct: 131 HAHLVEAAEQCERLTVPDLAEPAALDKVLAGWPAERVLLFLDEGGGGVPLAEVLNGLS-G 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +A+L+GPEGG+ EE+ + S PF + LGPRILR Sbjct: 190 QKLALLVGPEGGFDGEERRLIASRPFARAVGLGPRILR 227 >gi|82751180|ref|YP_416921.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus RF122] gi|82656711|emb|CAI81138.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 250 Score = 237 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R F+D + + + + H++ +V+R G I+L +L +I+ + K Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q+ + DV IK ++ ++++QK+ E+G + V ++ Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMEHSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|238561245|ref|ZP_00442303.2| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse 4] gi|121227903|gb|ABM50421.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei SAVP1] gi|126242088|gb|ABO05181.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10247] gi|238524927|gb|EEP88357.1| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse 4] Length = 246 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 18/235 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 1 MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRGA 59 Query: 67 FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ V +++D++I+K+VE+G+ A+ P+ T + Sbjct: 60 LARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + R ++ EQC LP I P + L D +++ + Sbjct: 120 RADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRLLLSPRASV 179 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 180 ---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 230 >gi|282916847|ref|ZP_06324605.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus D139] gi|283770653|ref|ZP_06343545.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus H19] gi|282319334|gb|EFB49686.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus D139] gi|283460800|gb|EFC07890.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus H19] Length = 250 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R F+D + + + + H++ +V+R G I+L +L +I+ + K Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNNQTVYLCEIADITSDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|217964384|ref|YP_002350062.1| protein YqeU [Listeria monocytogenes HCC23] gi|217333654|gb|ACK39448.1| protein YqeU [Listeria monocytogenes HCC23] gi|307571051|emb|CAR84230.1| conserved hypothetical protein [Listeria monocytogenes L99] Length = 255 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTNELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ A EQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEATEQSHRTVIPEVHYAASFKELMYDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLHLQEVN-AKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|290894231|ref|ZP_06557200.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556228|gb|EFD89773.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 255 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTNELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 V++ ++ K ++L+ +IQKS E+G P V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVITAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLHLQEVN-AKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|15924567|ref|NP_372101.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus Mu50] gi|15927157|ref|NP_374690.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus N315] gi|148268061|ref|YP_001247004.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus JH9] gi|150394129|ref|YP_001316804.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus JH1] gi|156979895|ref|YP_001442154.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus Mu3] gi|253316052|ref|ZP_04839265.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006363|ref|ZP_05144964.2| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793653|ref|ZP_05642632.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258411047|ref|ZP_05681327.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258420149|ref|ZP_05683104.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258437409|ref|ZP_05689393.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443615|ref|ZP_05691954.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446822|ref|ZP_05694976.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448736|ref|ZP_05696848.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258453553|ref|ZP_05701531.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269203205|ref|YP_003282474.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus ED98] gi|282893078|ref|ZP_06301312.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8117] gi|282928210|ref|ZP_06335815.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A10102] gi|296275801|ref|ZP_06858308.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MR1] gi|13701375|dbj|BAB42669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247348|dbj|BAB57739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147741130|gb|ABQ49428.1| protein of unknown function DUF558 [Staphylococcus aureus subsp. aureus JH9] gi|149946581|gb|ABR52517.1| protein of unknown function DUF558 [Staphylococcus aureus subsp. aureus JH1] gi|156722030|dbj|BAF78447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787625|gb|EEV25965.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257840197|gb|EEV64661.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257843860|gb|EEV68254.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257848614|gb|EEV72602.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851021|gb|EEV74964.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854397|gb|EEV77346.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858014|gb|EEV80903.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257864284|gb|EEV87034.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075495|gb|ACY11468.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus ED98] gi|282590017|gb|EFB95099.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A10102] gi|282764396|gb|EFC04522.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8117] gi|285817259|gb|ADC37746.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus 04-02981] gi|312829965|emb|CBX34807.1| RNA methyltransferase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129856|gb|EFT85846.1| hypothetical protein CGSSa03_02183 [Staphylococcus aureus subsp. aureus CGS03] gi|329727099|gb|EGG63555.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus 21172] Length = 250 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R F+D + + + + H++ +V+R G I+L +L +I+ + K Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|220929216|ref|YP_002506125.1| hypothetical protein Ccel_1795 [Clostridium cellulolyticum H10] gi|219999544|gb|ACL76145.1| protein of unknown function DUF558 [Clostridium cellulolyticum H10] Length = 245 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 11/239 (4%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEY 71 + + + +L VLR + D + + G ++ +I + S + + Sbjct: 3 ESQIGDGRVNIIEEDFQHLKKVLRAQIKDELTVCCG-GFDYTVEIEEIKNSSIVCVITDI 61 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNM 124 V K+++++ +IQK VE+G+ I PV+T ++ + Sbjct: 62 NKNYTESSLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPVMTERCVSRINTDKDAQNKL 121 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 R + AA+QC+ +P I+ P T + ++ V E + + Sbjct: 122 ARWQKIAREAAKQCNRGIIPNIHYPITFKEAVEMASQAELSVIPYEKESAVGLKNVVARY 181 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 I + +I+IGPEGG+ +E + V +SLGPRILR++TA + +++L+ GD Sbjct: 182 QGITSGSIIIGPEGGFEEKEVKMAEDRG-VKKISLGPRILRTETAGMVSLSLMMYELGD 239 >gi|288555682|ref|YP_003427617.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4] gi|288546842|gb|ADC50725.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4] Length = 250 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++R FV + +GD ++A V+RM+EG+ I++ N L+K+ + +S I Sbjct: 1 MQRYFVSEDQLNGSIVTITGDDVKHIARVMRMQEGEEIIVSNNAGRTVLAKLKKLSESDI 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 + +V + +T+ V K ++L+ + QK E+G+ +P + Sbjct: 61 QAEVLEELDPKTELPIKVTVAQGLPKGDKLELITQKGTELGVSCFQPFQASRSIVKWDMK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R+ AAEQ +P I + LL+ + + A E Sbjct: 121 KAKKKVERLEKIAKEAAEQSYREIIPTIKEAASFTQLLETIESYTHTIVAYEESAKTGEA 180 Query: 179 EKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 LH + +V I+IGPEGG EE L V LGPRI+R++TA + M Sbjct: 181 SNLHNVLNQVKSGDSVLIVIGPEGGLTEEEVSALEGKGAVL-CGLGPRIIRTETAPLYVM 239 Query: 235 ALVQAIC 241 A + Sbjct: 240 AAISYHL 246 >gi|186477349|ref|YP_001858819.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phymatum STM815] gi|184193808|gb|ACC71773.1| protein of unknown function DUF558 [Burkholderia phymatum STM815] Length = 251 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 19/257 (7%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + R FV P + + VLR++ GD + LFNG GE+ ++I Sbjct: 1 MRT-FLMPRFFVGTPFKTDDIVSLPDEVNRH-VRVLRLQPGDTVSLFNGDGGEYGAEIVD 58 Query: 61 VGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 + + I V ++ + ++++D++I+K+ E+G P+ T + Sbjct: 59 MDRHGTIVRIVGFRDIECEPPYRLTLAQGIAGSDKMDWLIEKATELGACEFVPLTTTRSV 118 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVF 167 + + ++ EQC LP + P L L D +++ Sbjct: 119 VRLAGERAQRRQVHWQRIVQASCEQCGRNRLPQVMPTRELATWLSTMPKEPVDGELRLLL 178 Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + L +L+GPEGG+ + E+ + F T + LGPR+LR++ Sbjct: 179 SPRASV---PFSALPVEPPKVRALVLVGPEGGFSAAEEAAAAAHGF-TAVGLGPRVLRTE 234 Query: 228 TAAVAAMALVQAICGDW 244 TA +A ++ + A G W Sbjct: 235 TAGIAVLSALAARWGGW 251 >gi|207721568|ref|YP_002252007.1| hypothetical protein RSMK01827 [Ralstonia solanacearum MolK2] gi|206586729|emb|CAQ17314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 249 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R ++D PL T ++ HVLR+ GD++ LF+G E+ +++ + + Sbjct: 3 LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINRRDA 61 Query: 66 RFKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ T+ V +++D++I+K+VE+G+ AI P+ T + Sbjct: 62 TASLADATQPDTEARYVITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176 + + +A EQC +P + P TTL L + +++ + S Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQSLT 181 Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +LIGPEGG +E+ + ++ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|167825846|ref|ZP_02457317.1| hypothetical protein Bpseu9_19397 [Burkholderia pseudomallei 9] Length = 251 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 18/239 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 195 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTETAG 250 >gi|49483825|ref|YP_041049.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus MRSA252] gi|257425702|ref|ZP_05602126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428363|ref|ZP_05604761.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431000|ref|ZP_05607380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433688|ref|ZP_05610046.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436602|ref|ZP_05612646.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282904159|ref|ZP_06312047.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus C160] gi|282905986|ref|ZP_06313841.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus Btn1260] gi|282908896|ref|ZP_06316714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911215|ref|ZP_06319017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914384|ref|ZP_06322170.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M899] gi|282919353|ref|ZP_06327088.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus C427] gi|282924678|ref|ZP_06332346.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp. aureus C101] gi|283958341|ref|ZP_06375792.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus A017934/97] gi|293503458|ref|ZP_06667305.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp. aureus 58-424] gi|293510475|ref|ZP_06669181.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293531015|ref|ZP_06671697.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M1015] gi|295428155|ref|ZP_06820787.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus EMRSA16] gi|49241954|emb|CAG40649.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271396|gb|EEV03542.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275204|gb|EEV06691.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278430|gb|EEV09066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281781|gb|EEV11918.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283953|gb|EEV14076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282313513|gb|EFB43908.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp. aureus C101] gi|282317163|gb|EFB47537.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus C427] gi|282321565|gb|EFB51890.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M899] gi|282324910|gb|EFB55220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327160|gb|EFB57455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331278|gb|EFB60792.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus Btn1260] gi|282595777|gb|EFC00741.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus C160] gi|283790490|gb|EFC29307.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920283|gb|EFD97349.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus M1015] gi|291095124|gb|EFE25389.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp. aureus 58-424] gi|291466839|gb|EFF09359.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295128513|gb|EFG58147.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus subsp. aureus EMRSA16] gi|315195480|gb|EFU25867.1| hypothetical protein CGSSa00_07415 [Staphylococcus aureus subsp. aureus CGS00] Length = 250 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R F+D + + + + H++ +V+R G I+L +L +I+ + K Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|315652517|ref|ZP_07905501.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315485233|gb|EFU75631.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 245 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 9/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + FV+ SG +++ +VLRMK G+ +L+ D ++L KI + + Sbjct: 1 MYHFFVEEEQVNGENAYISGSDVNHIVNVLRMKIGEELLISVKGDWDYLCKIEEIENDRV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K+ + + + K+++++ +IQK++E+G+ I PV T + Sbjct: 61 NLKLLESMEQRELPIKLTLLQGIPKSDKIEMIIQKAIELGVSEIIPVKTNRVVVRIDKKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178 T ++R SAA+Q +P + P TL+ L+ D+ +++ + G + + Sbjct: 121 TQAKVNRWNAIAQSAAKQSKRSIIPKVLNPQTLDNALEIVKDYGVKLLPYENADGIKKTK 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L+++ N+A+ IGPEGG+ E + F ++LG RILR++TA +A ++ + Sbjct: 181 DILNSLNSKNNIAVFIGPEGGFEEAEVKKSTDSGF-EVITLGKRILRTETAGLALLSNIM 239 Query: 239 AIC 241 Sbjct: 240 IRL 242 >gi|291529135|emb|CBK94721.1| RNA methyltransferase, RsmE family [Eubacterium rectale M104/1] Length = 246 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + + FV+ +G +++ +VLRMK G+ I + + + IS + + Sbjct: 1 MYQFFVEEEQVHSDSISITGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + T+ + K ++++ +IQK+VE+G+ I PV + + Sbjct: 61 IAAIDSADETGTELDNHIVLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDDK 120 Query: 125 ------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177 R + SAA+Q +P + P T + LK + + +V + G + + Sbjct: 121 KAAKKLQRWQAIAESAAKQSKRTVIPTVNQPVTYKEALKIASELDITLVPYENERGMDAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + + + +++GPEGG+ EE + + +SLG RILR++TA +AA+A++ Sbjct: 181 REIMGQLKAGQTIGVVVGPEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240 >gi|222151476|ref|YP_002560632.1| hypothetical protein MCCL_1229 [Macrococcus caseolyticus JCSC5402] gi|222120601|dbj|BAH17936.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 245 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 17/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F+D I + SG D H++ +V+R + GD +++ N + + +I + I Sbjct: 1 MQRYFLDVKSVINETYQISGKDDVHHIKNVMRQQTGDKVIV-NFTNATMICEIIDIQTEI 59 Query: 66 RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K +E V +K ++ ++MIQK+ E+G + P ++ T + Sbjct: 60 TVKPIEDIDILTEMPVSVTIASGLLKNDKYEWMIQKATELGATSFIPFVSERTIVKVDEK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R AAEQ +P I + + L K + ++ A E + Sbjct: 120 KFQKKVERFTKIVKEAAEQSYRQIVPSIEFVASGKALAKKLEAFDHVLIAYEETAKSGEI 179 Query: 179 ----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L + H V ++ GPEGG E + LGPRILR++TA + A+ Sbjct: 180 KRFTEALQDVKHGDKVCVIFGPEGGLSEAEVAQF----GSKVIGLGPRILRAETAPLYAL 235 Query: 235 ALVQAIC 241 + + Sbjct: 236 SAMSFHF 242 >gi|283470856|emb|CAQ50067.1| protein YqeU [Staphylococcus aureus subsp. aureus ST398] Length = 250 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 ++R F+D + + + + H++ +V+R G I+L +L +++ + K Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEVADITSDK 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|77163661|ref|YP_342186.1| hypothetical protein Noc_0123 [Nitrosococcus oceani ATCC 19707] gi|254435009|ref|ZP_05048516.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani AFC27] gi|76881975|gb|ABA56656.1| 16S rRNA m(3)U-1498 methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088120|gb|EDZ65392.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani AFC27] Length = 243 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 13/246 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L I + Y+ VLR++ G + LF+G+ E+ + + + K Sbjct: 2 RVPRVYFPLSLSIGSSVSLDERALQYVIRVLRLRLGAQLRLFDGRGAEYQAVLETIEKRA 61 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +E + + R+DY +QK+VE+G+ I P++T + Sbjct: 62 VKVRILERIEHHVESPLHIILGQGISRGERMDYALQKAVELGVSRIIPLLTERSAVNLSA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + ISA EQC +P + P L L++ DH V D S Sbjct: 122 ERAEKRLRHWQGVIISACEQCGRNYIPPVDTPRPLADFLRD-DHRGLAVLLD--PRSRRP 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L+ L + + +LIGPEGG + E + F+ + LGPRILR++TA VAA+ + Sbjct: 179 LKALP-LPLDNRLIVLIGPEGGLNKGEAKQAQQADFI-GVCLGPRILRTETATVAALTAL 236 Query: 238 QAICGD 243 Q + GD Sbjct: 237 QLLWGD 242 >gi|302333253|gb|ADL23446.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus JKD6159] Length = 250 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDQ 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|332971497|gb|EGK10447.1| 16S rRNA methyltransferase RsmE [Kingella kingae ATCC 23330] Length = 240 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 17/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + ++ VLR+ GD+++LF+G+ + ++ +GK Sbjct: 1 MPRFYLPN-LPDAGELNLPDCIVRHI-QVLRLNVGDDLILFDGRGKRVHATLTELGKRKA 58 Query: 67 FKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + +S + + + R+D+ IQKSVE+G+ +I P+ + + Sbjct: 59 ACTLAPTEQINSESALSIHLLQAISSGERMDFTIQKSVELGVASITPIWSERCVVKLQGE 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + ISA EQC +P + P + +K + S Sbjct: 119 RADKRVQRWQDIAISACEQCGRDIVPEVRPIVRFDDYIKQMPREQLHLLM-----SLQQA 173 Query: 179 EKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L A+ P V ++IGPEGG+ + E++ F + LG R+LR++TA++AA+A + Sbjct: 174 KSLQAMQPAPQTVYLMIGPEGGWTAAEEQAALDAGFQAIV-LGKRVLRTETASLAAIAAM 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QTLWGDF 239 >gi|319400913|gb|EFV89132.1| RNA methyltransferase family protein [Staphylococcus epidermidis FRI909] Length = 250 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F++ + YH++ +V+R KEG NI++ + + KI + +S Sbjct: 1 MQRYFMNQSADENQCFFIENKEDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQS 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 I K+E + + T+ ++ IK ++ ++MIQK+ EMG V + Sbjct: 61 IEIKLEEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLND 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R + AAEQ LT+P I + L+ + + ++ A E Sbjct: 121 SKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMINQYDYVLIAYEEQAKHGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + + V I+ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEIALFDDVS--TIVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ V Sbjct: 239 LSAVSYE 245 >gi|302671977|ref|YP_003831937.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316] gi|302396450|gb|ADL35355.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316] Length = 250 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 113/249 (45%), Gaps = 15/249 (6%) Query: 7 LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLF---NGKDGEWLSKISYV 61 + FV+ + +G+ Y+++A+VLRM++G+ + + + E +I + Sbjct: 1 MYHFFVESSQVTPDFKTVEITGNDYNHIANVLRMQKGEQFSVSIRDDDEGKEIFYEIEDI 60 Query: 62 GKSIRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117 S + S + K ++++ +IQK+VE+G I P+ T+ Sbjct: 61 TDSSVIGHLCFIEKVGNELPSKIYLFQGLPKVDKMELIIQKAVELGAFQIVPMSTKRCVV 120 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETC 172 + + R + + +AA+Q +P + P T++ ++ D + +I+ + Sbjct: 121 KLDDKKAENKIKRWQAISEAAAKQSKRAIIPEVTMPMTMKQAVEFAKDMDVKIIPYENAK 180 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G E + + I N+A+ IGPEGG+ +E + + P++LG RILR++TA Sbjct: 181 GIEETKRIIENIKPGQNIAVFIGPEGGFSEQEIDLCREND-IMPITLGKRILRTETAGFT 239 Query: 233 AMALVQAIC 241 ++ + Sbjct: 240 IISWLMYHL 248 >gi|167586100|ref|ZP_02378488.1| hypothetical protein BuboB_12224 [Burkholderia ubonensis Bu] Length = 255 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD ++LF+G G++ +++ + K Sbjct: 8 AAVPRFFVEAALSAGAVLALPADVARH-AQVLRLQPGDALVLFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ AI P+ T Sbjct: 67 SAVAQLDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAIAPLSTSRGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + P + L D +++ + Sbjct: 127 GERAEKRVAHWRGIVRASCEQCGRNRVPDVAPVRGFDAWLDALPAARADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L +V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 SM---PFASLPDAPPAASVTLLIGPEGGLSPDEEHAARTHGF-TALSLGPRVLRTET 239 >gi|311031620|ref|ZP_07709710.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. m3-13] Length = 253 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 17/254 (6%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKIS 59 MKI ++R FV+ ++ +G+ H++ V+RM E D +L + + L KI+ Sbjct: 1 MKI---VQRYFVNSNQIDESSISITGEDVHHITRVMRMNEDDQLLCSCSETRQTALCKIA 57 Query: 60 YVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + VE+ V K ++L+ +IQK E+G + P + Sbjct: 58 EITNDMVVTDIVEWIKAETEIPVRVSIANGLPKGDKLELVIQKGTELGAESFIPFNAARS 117 Query: 118 QNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171 ++R AAEQ +P + P TL LL+ + A E Sbjct: 118 IVKWDEKKGKKKVERWNKIAKEAAEQSHRSMVPVVEEPATLAQLLEKSRDYTYKIVAYEE 177 Query: 172 CGSENS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 E L + ++ + GPEGG +E + L FV P +LGPRILR++ Sbjct: 178 SAKEGESSAFANTLKNMKPGESILCVFGPEGGLAQKEIDKLVEHGFV-PCALGPRILRTE 236 Query: 228 TAAVAAMALVQAIC 241 TA + +A + Sbjct: 237 TAPLYVLAAISYHF 250 >gi|206561729|ref|YP_002232494.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia J2315] gi|198037771|emb|CAR53715.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 246 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 18/235 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FVD L D + VLR++ GD + LF+G G++ +++ V K S Sbjct: 1 MPRFFVDAALRADATLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKRSA 59 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V+ ++ V +++D++I+K+VE+G+ A+ P+ T + Sbjct: 60 LVQVDSFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + R ++ EQC +P + P L D +++ + Sbjct: 120 RADKRVAHWRGVVRASCEQCGRNRVPDVAPVIGFSAWLDALPAAPADGELRLLLSPRAS- 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 179 --IPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGF-TALSLGPRVLRTET 230 >gi|91978577|ref|YP_571236.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris BisB5] gi|91685033|gb|ABE41335.1| protein of unknown function DUF558 [Rhodopseudomonas palustris BisB5] Length = 251 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 130/230 (56%), Gaps = 3/230 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RLFVD L + DQ +YL +VLR+ G +L FNG+DGEW + I+ Sbjct: 3 RYDFRSPRLFVDAALAPGARVPLDRDQSNYLGNVLRLGAGAPVLTFNGRDGEWRAAIAGR 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + +V Q+R Q + D+ Y+F+P+K +RLDYM QK+VEMG G ++PV+TR+TQ Sbjct: 63 KRPEELEVTDQTRPQDRLPDLTYVFAPLKHSRLDYMTQKAVEMGAGRLQPVLTRHTQVHR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEK 180 N DR+R I AAEQC IL++ + LE L D + F DE + + Sbjct: 123 LNTDRMRANAIEAAEQCGILSVAAVEESIALERWLAARADGGRLLAFCDEDAEIADPVAA 182 Query: 181 LHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + +L+GPEGG+ +EE+E L P + L+LGPRI+R+DT Sbjct: 183 LQGARATAAQGIDLLVGPEGGFSNEERELLLRQPNILRLALGPRIMRADT 232 >gi|326561136|gb|EGE11501.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 7169] Length = 247 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 18/242 (7%) Query: 7 LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL I H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118 KS K++ Y ++T + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120 Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + ++ ++A EQC + +P I P L+ + N ++V A SE Sbjct: 121 KYDRDFKKIAHWQSVAVAACEQCGMNIVPNIIAPILLDEWVANCQDELKLVLA----LSE 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 N+ + I N+++LIG EGG E + FV P +G R+LR++TA V A++ Sbjct: 177 NN-PAFNKILP-KNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVVALS 233 Query: 236 LV 237 + Sbjct: 234 AL 235 >gi|296444351|ref|ZP_06886316.1| protein of unknown function DUF558 [Methylosinus trichosporium OB3b] gi|296257998|gb|EFH05060.1| protein of unknown function DUF558 [Methylosinus trichosporium OB3b] Length = 247 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 1/219 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 +RLFVD L + GD+ +YL +VLR++EGD +LLFNG+DGEWL+++ V + S Sbjct: 9 QRLFVDERLEAGARMIPDGDRLNYLLNVLRLREGDGVLLFNGRDGEWLARLEKVTRRSAE 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++R QT D+ Y F+P+K RLDYM QK+ EMG + P+ITR TQ N+ R Sbjct: 69 LVATTRAREQTAPCDLHYCFAPLKHARLDYMAQKATEMGASRLVPIITRRTQARRVNLTR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R I AAEQC +L +P + +L+ L + +VF DE + + L A Sbjct: 129 LRANAIEAAEQCGVLGVPEVAEEVSLDAFLAGLCASRLLVFCDEAAEIADPVAALRAAPE 188 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +A++IGPEGG+ EE+ + S V L+LGPRILR Sbjct: 189 HEGIAVIIGPEGGFDEEERRAILSAGKVARLALGPRILR 227 >gi|313200262|ref|YP_004038920.1| hypothetical protein MPQ_0502 [Methylovorus sp. MP688] gi|312439578|gb|ADQ83684.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 243 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 13/245 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D PL + ++ VLR++ GD + LFNG ++ ++I + K+ Sbjct: 4 PRFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDALRLFNGDGHDYSAEIETIRKNEVI 63 Query: 68 KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 Q + S + + +R+D+ IQKSVE+G+ I+P+ ++ + Sbjct: 64 VKTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHTIQPISSQRSVVKLSGDR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQ LP + T+L L + + D + L+ Sbjct: 124 ADKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQ 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + +LIGPEGG SEE S F T + LGPRILR++TAA+AA+A + Sbjct: 182 DLP--LPQGPICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINT 238 Query: 240 ICGDW 244 + GD+ Sbjct: 239 VWGDF 243 >gi|229597247|ref|YP_001897009.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phytofirmans PsJN] Length = 251 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + S Sbjct: 6 MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ E++ + +++D++I+K+VE+G + P+ T + Sbjct: 65 MVKIREFRDIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGD 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + ++ EQC LP + P + L + + + +I+ + Sbjct: 125 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSPRAS- 183 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S L + V +L+GPEGG+ + E+ + F T + LGPR++R++TA +A Sbjct: 184 --ISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETAGIAV 240 Query: 234 MALVQAICGDW 244 ++ + A G W Sbjct: 241 LSALAAGWGGW 251 >gi|328474981|gb|EGF45775.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes 220] Length = 255 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++ V+RMKE D + + ++ I+ + Sbjct: 1 MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117 F V++ ++ K ++L+ +IQK E+G P V+ Sbjct: 61 VFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKRTELGAHKFIPYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|182418451|ref|ZP_02949745.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237666873|ref|ZP_04526858.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377833|gb|EDT75377.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237658072|gb|EEP55627.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 253 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 14/250 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F + + G G+ ++ VLR+ EG+ I+L N + E+L KI+ + KS Sbjct: 1 MHKFFTEPYNINENVGIIVGEDVKHIYKVLRLSEGEEIILNNCEGIEYLGKINSINKSEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 ++ + + K ++D ++QK E+G+ P IT + Sbjct: 61 IVDIIQKLDTNNESDIKIYLFQGLPKGQKMDLIVQKGTELGINEFIPTITDRVDVKLKGE 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------- 173 +DR+ + A++Q +P + E + N ++ ++ E Sbjct: 121 FKKLDRLNRIALEASKQSKRSIIPKVKEVINFEEAMLNLENMDLVIVPYENAENFGVKTL 180 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + E+ +++I NV I+IGPEGG+ +E + L + ++LG RILR++TA A Sbjct: 181 MKKLREEKEDLSYIHNVGIVIGPEGGFEEDEIKELSNRGAY-IVTLGRRILRTETAGFTA 239 Query: 234 MALVQAICGD 243 AL+Q D Sbjct: 240 TALIQYELSD 249 >gi|260567973|ref|ZP_05838442.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261753715|ref|ZP_05997424.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|260154638|gb|EEW89719.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261743468|gb|EEY31394.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 235 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 138/238 (57%), Gaps = 22/238 (9%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 A HYL HVLRMKEGD +L+FNG+DGEW + + G K + + Q+R Q Sbjct: 5 AGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQ 64 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 K S++ Y F+P+K +LDYM+QK+VEMG G ++PVIT++TQ +R+R I AAE Sbjct: 65 PKPSELIYCFAPLKQGQLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAE 124 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +L+LP + L WD + +++F DE S++ L L + P+ +LIGP Sbjct: 125 QCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGP 183 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMALVQAICGDW 244 EGG+ EE++ LH LPFVT + LGPRILR LVQA+ GDW Sbjct: 184 EGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA----------LVQAVLGDW 231 >gi|242373882|ref|ZP_04819456.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis M23864:W1] gi|242348436|gb|EES40038.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis M23864:W1] Length = 253 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 +L+R F++ + + H++ HV+R KEG++I++ + +I + + Sbjct: 3 NLQRYFINQNADENQRFFIEDREDVHHITHVMRYKEGNHIIITFSDKKVYKCEIISINDN 62 Query: 65 -IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 I ++ E Q + + IK ++ ++MIQK+ EMG R VI Sbjct: 63 NIELRLDEKQDINTELPQHITICSGLIKADKYEWMIQKATEMGASEFIAVGMDRSVIKLN 122 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 +DR + AAEQ LT+P IY + L+ + +H ++ A E Sbjct: 123 ESKVAKKIDRWQKIIKEAAEQSYRLTIPNIYFKSNLKAIYDMINHYDYVLIAYEEQAKHG 182 Query: 177 SLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L L V ++ GPEGG +E T + LGPRILR++TA + Sbjct: 183 DLSHFKHILKQFESQDRVLMIFGPEGGLSDKEVSLFQEHS--TLVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ V Sbjct: 241 ALSAVSFE 248 >gi|52210978|emb|CAH36966.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] Length = 246 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 18/235 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 1 MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRGA 59 Query: 67 FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ V +++D++I+K+VE+G+ A+ P+ T + Sbjct: 60 LARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + R ++ EQC LP I P + L D +++ + Sbjct: 120 RADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRASV 179 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 180 ---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 230 >gi|187716561|gb|ACD17785.1| protein of unknown function DUF558 [Burkholderia phytofirmans PsJN] Length = 246 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 18/251 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV PL + D ++ VLR++ GD+I+LFNG+ GE+ +++ V + S Sbjct: 1 MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ E++ + +++D++I+K+VE+G + P+ T + Sbjct: 60 MVKIREFRDIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGD 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173 + ++ EQC LP + P + L + + + +I+ + Sbjct: 120 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSPRAS- 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S L + V +L+GPEGG+ + E+ + F T + LGPR++R++TA +A Sbjct: 179 --ISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETAGIAV 235 Query: 234 MALVQAICGDW 244 ++ + A G W Sbjct: 236 LSALAAGWGGW 246 >gi|92118652|ref|YP_578381.1| 16S ribosomal RNA methyltransferase RsmE [Nitrobacter hamburgensis X14] gi|91801546|gb|ABE63921.1| protein of unknown function DUF558 [Nitrobacter hamburgensis X14] Length = 261 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 94/251 (37%), Positives = 135/251 (53%), Gaps = 21/251 (8%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 RL+VD PL + +Q +YL +VLR+ G N+L+FNG+DGEW + IS + Sbjct: 6 FRSPRLYVDAPLEPGGKVPLDRNQGNYLGNVLRLGSGANVLVFNGRDGEWRAAISGRKRP 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + +R+Q + D+ Y+F+P+K RLDYM+QK+VEMG+ A++PV+TR+TQ N Sbjct: 66 ECLDIVAAARAQDRLPDLHYVFAPLKHARLDYMVQKAVEMGVSALQPVLTRFTQVARVNG 125 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R+R I AAEQC IL+L + P TL+ L +V DE N L + Sbjct: 126 ERMRANVIEAAEQCGILSLAAVEEPVTLDRWLGRRAPERLLVLCDEAALVTNPAAALEPM 185 Query: 185 AHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAA 233 + +L+GPEGG+ +E+ L + P LSLGPRILR Sbjct: 186 RGAAHGIDVLVGPEGGFAEDERANLLNQPNTLRLSLGPRILRADTAAVAAIA-------- 237 Query: 234 MALVQAICGDW 244 LVQ + GDW Sbjct: 238 --LVQTVLGDW 246 >gi|91776603|ref|YP_546359.1| hypothetical protein Mfla_2251 [Methylobacillus flagellatus KT] gi|91710590|gb|ABE50518.1| 16S rRNA m(3)U-1498 methyltransferase [Methylobacillus flagellatus KT] Length = 245 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 13/245 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R + L + +G+ + + LRM+ GD+ +LFNG +LS+++ + K Sbjct: 4 PRFYHPGALIPGNETALAGNAASHASKALRMQVGDHAILFNGDGHNYLSRLTSIRKQEVI 63 Query: 68 --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +E Q + + +R+D+ IQK+VEMG+ +I+P+ ++ + + Sbjct: 64 AEVLEAQPCPTESPLKITLAQAISSGDRMDFTIQKAVEMGVSSIQPIFSQRSIVKLTGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQ +P + P L L A T L Sbjct: 124 AEKRREHWQNVAISACEQSGRAYIPPVAPAINLSEWLAQKPGAD----AYITLAPGAPLT 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + ++ +LIGPEGG E F T + +GPRILR++TAA+AA+A +Q Sbjct: 180 LPQLTSPTRHICLLIGPEGGLADHEIALAAQHGF-TLVRMGPRILRTETAAIAAIASMQT 238 Query: 240 ICGDW 244 + GD+ Sbjct: 239 LWGDF 243 >gi|229828427|ref|ZP_04454496.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM 14600] gi|229793021|gb|EEP29135.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM 14600] Length = 246 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 8/243 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 ++++FVD G+ +L V+R++ G+ + + ++ + V + Sbjct: 1 MQQVFVDARQVNDEIVTIQGEDARHLGRVVRIRPGEEVRVSVRGGRDYYGHVLMVDREEM 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K+ ++ S + + K +R++ +I+K+VE+G+ I PV TRY + Sbjct: 61 TVKLVEEAASTELAQKICLFQAIPKGDRMETVIEKAVELGVYEIVPVETRYCVVRLDEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178 +R + +AA Q +P I P T + L + D + ++ + G + + Sbjct: 121 KARKRERWQAIAANAARQSKRSIIPRIAPVTPYQKALDDAGDADLVLLPYENARGMQATG 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L A+AH + I IGPEGG+ ++E + + +SLG RILR+DTAA+AAM +V Sbjct: 181 EALTAVAHAGGIGIFIGPEGGFAADEIKAAQGKDNIRVISLGRRILRTDTAAIAAMTMVM 240 Query: 239 AIC 241 C Sbjct: 241 MAC 243 >gi|304393152|ref|ZP_07375080.1| surface protein [Ahrensia sp. R2A130] gi|303294159|gb|EFL88531.1| surface protein [Ahrensia sp. R2A130] Length = 255 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 138/229 (60%), Gaps = 5/229 (2%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 +I +R F L + + +++ +VLRM +GD +LLFNG+DGEW + + Sbjct: 13 RIDFTTRRFFTPEALGAGGHIEPGRAEANHVLNVLRMGDGDPLLLFNGRDGEWRATVQRE 72 Query: 62 G-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 G K F + Q+R Q + ++ +F+P+K RL+YMIQK+VEMG G ++PV+T YTQ Sbjct: 73 GRKKATFVLGEQTRVQPELPTLRLLFAPLKQARLEYMIQKAVEMGAGHLQPVMTAYTQMR 132 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLE 179 N++R+ T+ + AA+QC +L LP +Y +++ + + ++F DE G+ +L+ Sbjct: 133 KVNIERMETHVVEAAQQCGVLALPQVYDVLSMQDAVADC---GTVIFCDEMEAGTGGALD 189 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + +A+LIGPEGG+ EE+E LH+ V + LGPRILR+DT Sbjct: 190 ILRDLTITAPLAVLIGPEGGFSPEEREWLHAQSHVHAIPLGPRILRADT 238 >gi|290968566|ref|ZP_06560104.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1 str. 28L] gi|290781219|gb|EFD93809.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1 str. 28L] Length = 241 Score = 235 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++++F DFPL + + + +G ++ VLR GD I + + + +I + G S Sbjct: 1 MRKIFTDFPL--EARFELNGADARHVLVVLRHGVGDRIAVTDSTGTTYACRIDSIAGHSA 58 Query: 66 RFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 VE + +T + V +K ++ +++IQK+ E+G+ I PV + Sbjct: 59 VLTVEERLSCRTQETGKVVLAAGLLKNDKFEWLIQKATELGVHTIIPVQMEHCVVKLNDN 118 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R R + AA+QC +P I L + + + ++ + SL Sbjct: 119 HRSGKFERWRRIAVEAAKQCGRDDVPIIREVMPFTELFQAYGTSRFVIPYERET---TSL 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLH-SLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ +V + IGPEGG+ +E + +SLG RILR++TAA+A+++++ Sbjct: 176 AEVCHEVQQGDVVLCIGPEGGFSPKEIAYAVSQAAWCRTVSLGKRILRAETAALASLSIL 235 Query: 238 QAICG 242 G Sbjct: 236 MYERG 240 >gi|253998192|ref|YP_003050255.1| hypothetical protein Msip34_0480 [Methylovorus sp. SIP3-4] gi|253984871|gb|ACT49728.1| protein of unknown function DUF558 [Methylovorus sp. SIP3-4] Length = 243 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 13/245 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F D PL + ++ VLR++ GD + LFNG ++ ++I + K+ Sbjct: 4 PRFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDTLRLFNGDGHDYSAEIETIRKNEVI 63 Query: 68 KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 Q + S + + +R+D+ IQKSVE+G+ AI+P+ + + Sbjct: 64 VKTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHAIQPISCQRSVVKLSGDR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQ LP + T+L L + + D + L+ Sbjct: 124 ADKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQ 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L I P + +LIGPEGG SEE S F T + LGPRILR++TAA+AA+A + Sbjct: 182 DLP-IPQGP-ICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINT 238 Query: 240 ICGDW 244 GD+ Sbjct: 239 AWGDF 243 >gi|119899122|ref|YP_934335.1| 16S ribosomal RNA methyltransferase RsmE [Azoarcus sp. BH72] gi|119671535|emb|CAL95448.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 243 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R L + H+ VLRM++G+ I+LF+G E + + GKS Sbjct: 2 ISRFHFPGVLPRHGETALPDAVAHHATRVLRMRDGEPIVLFDGSGAEAEATLVLRGKSAA 61 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + Y+ + D+ + + +++D+++QK+VE+G A++P+ + + Sbjct: 62 ALISAYREVDRESPLDLVLVQALATGDKMDWIVQKAVELGARAVQPIQAERSVLRLAGER 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + A EQ +P + +L+ L + V + L Sbjct: 122 ATRRREHWQQVAVGACEQSGRNRIPEVGEILSLQAYLAAAREDRATVRCVLDPAAAQGLS 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A + +L+GPEGG+ +E + TP+ LGPR+LR++TA +A +A +QA Sbjct: 182 ALPRPAGA--LHLLVGPEGGWSDDEL-AACAAAHCTPVGLGPRVLRTETAGLAMLAALQA 238 Query: 240 ICGDW 244 GD+ Sbjct: 239 RWGDF 243 >gi|53725660|ref|YP_104018.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei ATCC 23344] gi|124384319|ref|YP_001027236.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC 10229] gi|126452434|ref|YP_001067709.1| hypothetical protein BURPS1106A_3472 [Burkholderia pseudomallei 1106a] gi|166998553|ref|ZP_02264411.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20] gi|229008328|ref|YP_991742.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei SAVP1] gi|229027672|ref|YP_001082829.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC 10247] gi|242315666|ref|ZP_04814682.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b] gi|254178856|ref|ZP_04885510.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC 10399] gi|254202737|ref|ZP_04909100.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH] gi|254208079|ref|ZP_04914429.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU] gi|254299290|ref|ZP_04966740.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 406e] gi|52429083|gb|AAU49676.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC 23344] gi|124292339|gb|ABN01608.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10229] gi|126226076|gb|ABN89616.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1106a] gi|147746984|gb|EDK54061.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH] gi|147751973|gb|EDK59040.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU] gi|157808975|gb|EDO86145.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 406e] gi|160694770|gb|EDP84778.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC 10399] gi|242138905|gb|EES25307.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b] gi|243065237|gb|EES47423.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20] Length = 255 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239 >gi|304380834|ref|ZP_07363494.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340561|gb|EFM06495.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 253 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 3 NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 63 KIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 123 EAKAAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + L V ++ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ + Sbjct: 241 ALSAISYE 248 >gi|77965940|gb|ABB07320.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia sp. 383] Length = 262 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 15 AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARLVEIDKR 73 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 SALAQIDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 S---IPFTSLPDAPPAATVTLLIGPEGGLSPDEENAARARGF-TALSLGPRVLRTET 246 >gi|254454094|ref|ZP_05067531.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 238] gi|198268500|gb|EDY92770.1| conserved hypothetical protein TIGR00046 [Octadecabacter antarcticus 238] Length = 209 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 6/211 (2%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 +R+ G ++ LFNG+DGEW ++++ K Q++ D+ +F+PIK +R Sbjct: 2 MRLDVGADVSLFNGRDGEWHAQVAAASKKNGVLDCIVQTKPLQLPPDLWLVFAPIKKDRT 61 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 ++++K+ E+G I PV T YTQ+ DR++ + + AAEQC +P + Sbjct: 62 SFIVEKAAELGAARIVPVQTEYTQSANRVRQDRLQAHALEAAEQCGGTYVPEVAEIQKFA 121 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 + WD +I+F DET + ++ AILIGPEGG+ +E+E L+ + Sbjct: 122 KMFNRWDPTRRILFCDETMVGQGAV----IPTGEGPWAILIGPEGGFSDKERERLNGMAC 177 Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +SLGPRILR+DTAAVAAM L Q GDW Sbjct: 178 AHAISLGPRILRADTAAVAAMTLWQQALGDW 208 >gi|282875997|ref|ZP_06284864.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis SK135] gi|281295022|gb|EFA87549.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis SK135] Length = 250 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F++ + YH++ +V+R KEG NI++ + + KI + +S Sbjct: 1 MQRYFMNQSADENQCFFIENKEDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQS 60 Query: 65 IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 I K VE Q + ++ IK ++ ++MIQK+ EMG V + Sbjct: 61 IEIKLVEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLND 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R + AAEQ LT+P I + L+ + ++ A E Sbjct: 121 SKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + + V I+ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ V Sbjct: 239 LSAVSYE 245 >gi|284048078|ref|YP_003398417.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM 20731] gi|283952299|gb|ADB47102.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM 20731] Length = 244 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV G H++ HVLRMK G+ + + + + KI+ G++ Sbjct: 1 MYRFFVPRDF--GETMSIDGQDAHHITHVLRMKLGEQLQIVSLDQVAAVMKITGFGENRV 58 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 VE +S V I K ++L+++IQK++E+G+ IRP I ++ Sbjct: 59 DLALVETLEKSHEPSVKVTLIQGLPKQDKLEWVIQKAIELGVTEIRPAIMDHSVVKVDPA 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + +AA+Q +P + P ++ +IV A E + Sbjct: 119 KAAKKQERWQKIAEAAAKQSKRDIIPQVALPAKFRDIVTQCPAELKIV-AYEVEDTRGIR 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L A +A LIGPEGG +E L + +SLGPRI+R++TAA+A + + Sbjct: 178 EVLAAHKDARTIAFLIGPEGGISKDEFALTQELGW-HSVSLGPRIMRTETAALATLTAIM 236 Query: 239 AICG 242 G Sbjct: 237 YETG 240 >gi|167747076|ref|ZP_02419203.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662] gi|317471891|ref|ZP_07931226.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] gi|167654036|gb|EDR98165.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662] gi|316900664|gb|EFV22643.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA] Length = 245 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F++ GD +++ +VLRMK G+ +LL + E+ S++ + G I Sbjct: 1 MYRFFIEECQVDGAYIWVEGDDVNHIRNVLRMKAGERVLLCSESGMEYESELVSLEGDKI 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ + ++ + K +++D +IQK++E+G I PV + + Sbjct: 61 QARILDIHGAESELKTRIVLFQGLPKGDKMDLVIQKAIELGASEIVPVKMKRCVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 +R +SAA+Q +P + + + + +V + G E S Sbjct: 121 KARKKTERWNAVALSAAKQSKRGMIPRVSRVYSFHEAAEMARGLSMVLVPYEAAEGMEYS 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + + +V I IGPEGG+ E E L LSLG RILR++TA +A ++++ Sbjct: 181 RQLVKEVKGRESVGIFIGPEGGFEPAEIEELRESGG-QILSLGKRILRTETAGMAMLSVL 239 Query: 238 QAIC 241 Sbjct: 240 MFEL 243 >gi|315924412|ref|ZP_07920634.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622291|gb|EFV02250.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 245 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV Q G+++ + A +R+++ + + +G ++ I+ K Sbjct: 1 MHRFFVKPEQIHGDQIIIDGEEFKHAAKAVRIRDNELFEVCDGSGFDYHCLITCREKEQL 60 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 V + R V K ++D ++QK+ E+G+ ++ P ++ + Sbjct: 61 TAVIQEKRPSAGELPYTVTLFQGLPKGQKMDEIVQKNTELGISSVVPFVSAFCVAKLEEP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 R + AA+Q +P ++ P + + + ++ A E Sbjct: 121 DKVARKCGRWQRIAFEAAKQSKRGKIPQVHEPVAFQRMCEIAADFDLVIIAYEHEMDRPL 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L N+A+++G EGG+ EE E L + +SLG RILR++TA + +A + Sbjct: 181 QTVLEGRTQYRNIAVIVGSEGGFSREEVERLEAAG-AKSVSLGRRILRTETAGMVLLAQI 239 Query: 238 QAICG 242 G Sbjct: 240 NYAFG 244 >gi|167920517|ref|ZP_02507608.1| hypothetical protein BpseBC_18364 [Burkholderia pseudomallei BCC215] Length = 249 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 18/238 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 195 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 L A +V +LIGPEGG +E++ + F LSLGPR+LR++TA Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTETA 249 >gi|253733172|ref|ZP_04867337.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|297207704|ref|ZP_06924139.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911785|ref|ZP_07129228.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|253728712|gb|EES97441.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|296887721|gb|EFH26619.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886031|gb|EFK81233.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 253 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 3 NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 63 KIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 123 EAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + L V ++ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ + Sbjct: 241 ALSAISYE 248 >gi|282600332|ref|ZP_05973903.2| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541] gi|282565567|gb|EFB71102.1| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541] Length = 210 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95 M G I LF+G + + ++I+ K F S ++S + + + +++ Sbjct: 1 MSVGQKIELFDGSNHTFSAEITEATKKSVFVHIESSTLDDRESPLDIHLGQVMSRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKSVE+G+ I P+++ + + + + I+A EQC +P I P Sbjct: 61 FTIQKSVELGVNTITPLLSERCGVRLDGERLEKKLQQWQKIAIAACEQCGRNRIPEIRPV 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 +LE D +I S N+L A + +V +LIGPEGG +EE Sbjct: 121 QSLEAWCAENDGAFKINLHPRASHSVNTLP-----ADLKHVRLLIGPEGGLSTEEIAMTA 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 NYQF-TDILLGPRVLRTETTALTAITALQVRLGD 208 >gi|161509805|ref|YP_001575464.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848608|ref|ZP_06789354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A9754] gi|160368614|gb|ABX29585.1| hypothetical protein USA300HOU_1578 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824634|gb|EFG41057.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A9754] gi|320140538|gb|EFW32392.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus MRSA131] gi|320144075|gb|EFW35844.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp. aureus MRSA177] Length = 253 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 3 NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 63 KIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 123 EAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + L V ++ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ + Sbjct: 241 ALSAISYE 248 >gi|154686804|ref|YP_001421965.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus amyloliquefaciens FZB42] gi|154352655|gb|ABS74734.1| YqeU [Bacillus amyloliquefaciens FZB42] Length = 256 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 16/248 (6%) Query: 7 LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ + + +G+ H++A+V+RM GD I+ + E L + V K Sbjct: 1 MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSK 60 Query: 64 SI--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 E+ ++ ++ K ++L+++IQK E+G P + Sbjct: 61 DHISCSIAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + T LL+ ++ + V A E + Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ 180 Query: 176 NS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +L ++ ++ I+ GPEGG E L V LGPRILR++TA + Sbjct: 181 GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVL-CGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ V Sbjct: 240 YALSAVSY 247 >gi|196231634|ref|ZP_03130492.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428] gi|196224487|gb|EDY18999.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428] Length = 249 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R ++ + + H+ VLRMK GD LFNG+ E +I+ V K I Sbjct: 1 MPRFYIAPHAWNPDKLALDHGETHHALDVLRMKAGDRATLFNGQGAEATVEIASVDKGKI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------ 119 K S+S+ + + K +D +++K+ E+G I P+++ T Sbjct: 61 ALKKISVSKSEPIGCQIVLGQAIPKGKNMDLIVEKATELGAAGIVPLLSERTVVRCDEGE 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++ + I AA+QC LP ++ P + + ++ + ++ A S + E Sbjct: 121 ALAKREKWQRVAIEAAKQCGQNWLPTVFKPQSPKDFFQSGEKFDLMLIASLQPDSRHVKE 180 Query: 180 KLHAI-----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L V +L+GPEG + E + P++LGP ILRS+TAA+ + Sbjct: 181 VLAEAGASGKKKPARVLVLVGPEGDFTPAEVNLAKNAG-CRPVTLGPIILRSETAAIYCL 239 Query: 235 ALVQAIC 241 +++ Sbjct: 240 SVLSHEL 246 >gi|329896498|ref|ZP_08271556.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC3088] gi|328921715|gb|EGG29088.1| Ribosomal RNA small subunit methyltransferase E [gamma proteobacterium IMCC3088] Length = 216 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 16/221 (7%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI-- 89 + VLR+K G + LFNG + ++ K I +++ +S ++ + Sbjct: 1 MLKVLRLKTGAPLELFNGDGNNYQCELLDSAKRIATIRVLSAKANPTESSLRSRLGIVVS 60 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143 K +R+D+++QK+ E+G+ I P+ + + +SA EQ + Sbjct: 61 KGDRMDFVVQKATELGIHEIYPLTSERCDVKLNAERAEKRQQHWSKVAVSACEQSGRSVI 120 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P I P ++ + + + + V ++ E +VAIL+GPEGG Sbjct: 121 PRIAPIQSIHQWISEVNADLKWVLHHRASAEKSPTEA-------QSVAILVGPEGGLSET 173 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E E F+ + LGPR+LR++TA + A++++Q GD+ Sbjct: 174 EVELALQHKFIPTV-LGPRVLRTETAPLVALSVLQQRYGDF 213 >gi|313637806|gb|EFS03151.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri FSL S4-171] Length = 255 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F+D + + + + +G+ +H++ V+RMKEGD + + ++ ++KI + Sbjct: 1 MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ + +Q + K ++L+Y+IQKS E+G P + Sbjct: 61 VILNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR++ AAEQ +P ++ +L+ LL + IV A E E Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V ++ GPEGG +E L L V LGPRILR++TA + Sbjct: 181 DRTLASLFKEAVPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|228473117|ref|ZP_04057874.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC 33624] gi|228275699|gb|EEK14476.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC 33624] Length = 243 Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 6/240 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++ + D + ++ +++ VLR K GD + + +G+ + ++I Y+ K Sbjct: 1 MQLFYNDSLYPQVQEVTFDKEESNHIHKVLRKKTGDLLFITDGRGYLYEAQIQYITDKKC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + S + T + +P K R ++ ++K+ E+G+ + P++ +++ Sbjct: 61 TAHILSHSLAPTPAYHLHIAVAPTKMNERYEWFLEKATEIGVHEVTPILCDHSERKTIKT 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLEKLH 182 +R +SA +Q P + PP +L L + N + V + L++L Sbjct: 121 ERFEKILLSAMKQSLQCYKPQLNPPISLLEWLDTIESNSVGKYVAHCQEGARVLLLDRLE 180 Query: 183 AIAH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + N+ +LIGPEG + E + S F+ P+SL P LR++TAA+ A + + I Sbjct: 181 ELPQETTNLWVLIGPEGDFSQREIQKACSKGFL-PISLSPNRLRTETAAIVACSCISDIF 239 >gi|171992137|gb|ACB63056.1| protein of unknown function DUF558 [Burkholderia ambifaria MC40-6] Length = 262 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L + + A VLR++ GD + LF+G G++ +++ + K Sbjct: 15 AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 73 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 SV---PFASLPDAPPAAEVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246 >gi|291541829|emb|CBL14939.1| RNA methyltransferase, RsmE family [Ruminococcus bromii L2-63] Length = 242 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 12/243 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F + + G+ +++ VLRM+ GD+I L + ++ KIS + + + Sbjct: 4 FFTEKNIF-GNNYTLVGENAKHISKVLRMRTGDDITLVSPNKTQYECKISLITQGEVTVD 62 Query: 69 VEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + Q + + V + K +++D+++QK E+G+ I P+I+ ++ Sbjct: 63 IISQKPCENEPDVFVTLYQALPKGDKMDFIVQKCTELGISRIVPMISARCVSRPDEKSLK 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +R + + AA Q +P + P + + + N + VF E G S+ K+ Sbjct: 123 KKCERWQKIALQAAMQSRRGIIPEVTPCISFKEATEQTKQNEKTVFFYEMGGE--SVRKI 180 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 V + IG EGG+ E +++ ++ +LG RILR++TA +AA++++ Sbjct: 181 LNGTKPKTVGMFIGSEGGFEQSEVDSVTAIGG-QAATLGKRILRAETAPLAALSIIMYET 239 Query: 242 GDW 244 ++ Sbjct: 240 DNF 242 >gi|170701111|ref|ZP_02892086.1| protein of unknown function DUF558 [Burkholderia ambifaria IOP40-10] gi|170133972|gb|EDT02325.1| protein of unknown function DUF558 [Burkholderia ambifaria IOP40-10] Length = 262 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 15 AAVPRFFVEAALRADATLTLPADVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 73 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAMPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 S---IPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246 >gi|295406700|ref|ZP_06816505.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8819] gi|297245718|ref|ZP_06929583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8796] gi|294968447|gb|EFG44471.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8819] gi|297177369|gb|EFH36621.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus aureus A8796] Length = 253 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 3 NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 63 KIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 123 EAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + L V ++ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ + Sbjct: 241 ALSAISYE 248 >gi|313633215|gb|EFS00088.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri FSL N1-067] Length = 255 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++R F+D + + + + +G+ +H++ V+RMKEGD + + ++ ++KI + + Sbjct: 1 MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + V+ T+ + K ++L+Y+IQKS E+G P + Sbjct: 61 VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR++ AAEQ +P ++ +L+ LL + IV A E E Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V ++ GPEGG +E L L V LGPRILR++TA + Sbjct: 181 DRTLASLFKEAVPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|313608746|gb|EFR84566.1| ribosomal RNA small subunit methyltransferase E [Listeria monocytogenes FSL F2-208] Length = 255 Score = 234 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTNELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 V++ ++ K ++L+ +IQKS E+G R V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFITYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG +E L + LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLHLQEVN-AKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|229260091|ref|YP_367964.2| hypothetical protein Bcep18194_A3719 [Burkholderia sp. 383] Length = 255 Score = 234 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 SALAQIDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 S---IPFTSLPDAPPAATVTLLIGPEGGLSPDEENAARARGF-TALSLGPRVLRTET 239 >gi|299065688|emb|CBJ36861.1| putative ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum CMR15] Length = 249 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R +D PL T ++ HVLR+ GD I LF+G E+ +++ + + Sbjct: 3 LPRFHIDSPLAPHTTVTLPESVTRHI-HVLRLAVGDEICLFDGSGQEFRARLDAINRRDA 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ T+ + +++D++I+K+VE+G+ AI P+ T + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + +A EQC +P + P L L + + GS+ Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPTVSPVAPLRDWLAAAKASERARVMLSPRGSQPLT 181 Query: 179 E-KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + + I + + +LIGPEGG +E+ + ++ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAVQSRGRIGSAGIELLIGPEGGLSPDEEALAEAAGYL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|242242852|ref|ZP_04797297.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis W23144] gi|242233694|gb|EES36006.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis W23144] Length = 253 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +L+R F++ + YH++ +V+R KEG NI++ + + KI + + Sbjct: 3 NLQRYFMNQSADENQCFFIDNKEDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQ 62 Query: 64 SIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 SI K+E + + T+ ++ IK ++ ++MIQK+ EMG V + Sbjct: 63 SIEIKLEEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLN 122 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + R + AAEQ LT+P I + L+ + ++ A E Sbjct: 123 VSKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + + V I+ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEIALFGDVS--TLVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ V Sbjct: 241 ALSAVSYE 248 >gi|86141368|ref|ZP_01059914.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis MED217] gi|85831927|gb|EAQ50382.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis MED217] Length = 237 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 10/232 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++ + + D+ ++ VLR + GD + + NG + ++I S Sbjct: 1 MQLFYHPEIAAEAKEATFPKDESKHIVKVLRKRTGDVLDITNGSGNFFKAEIISASPSNC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+ + Q + +P K +R + ++K+ E+G+ I P+I +++ Sbjct: 61 TVKILEVTSEQPLPYHLHLAVAPTKLNDRFELFLEKATEIGISEISPIICDHSERKVIKE 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKL 181 +R SA +Q +P + + L K ++ + I +ET N Sbjct: 121 ERYERIIQSAMKQSLKAHIPKLNEAQSFSDFLETTKTFNGDRFIAHCEET----NRFSLK 176 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + +V ILIGPEG + E E F +P+ LG LR++TAA+ A Sbjct: 177 QKLQPKRDVLILIGPEGDFSPSEIEQAIQAGF-SPVMLGESRLRTETAAIVA 227 >gi|260775560|ref|ZP_05884457.1| ribosomal RNA small subunit methyltransferase E [Vibrio coralliilyticus ATCC BAA-450] gi|260608741|gb|EEX34906.1| ribosomal RNA small subunit methyltransferase E [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLD 95 MK G +LLF+G E+ + I V K E RS D+ + +++ Sbjct: 1 MKVGQEVLLFDGYGAEFPAVIEEVSKKSVTVNITERVERSSESPLDLHLGQVISRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKSVE+G+ I P+I+ + + + + ISA EQ +P I P Sbjct: 61 FTIQKSVELGVNTITPLISERCGVKLDQKRFEKKLAQWQKVAISACEQSGRNIVPQIRPI 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 L+ ++ S N+L A + V +LIGPEGG +EE E Sbjct: 121 MQLDEWCAEDYDGLKLNLHPRAKYSINTLP-----APVEKVRLLIGPEGGLSAEEIEKTR 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F L LGPR+LR++TAA+ A+ +Q GD Sbjct: 176 EYQFEETL-LGPRVLRTETAALTAITALQVRFGD 208 >gi|126730424|ref|ZP_01746235.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37] gi|126709157|gb|EBA08212.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37] Length = 247 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 4/218 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL VD PL + S DQ HYL V+R++ G + LFNG+DGEW ++++ GK Sbjct: 13 RLCVDQPLAEEQAVALSRDQAHYLFGVMRLERGARVALFNGRDGEWAAEVADAGKRGGTL 72 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + +Q D+ +F+P+K R D++++K+VEMG+ I PV T +T + +D+ Sbjct: 73 VCRDRQAAQGTPPDLWLLFAPVKKARTDFIVEKAVEMGVRRILPVQTDFTNSERLRVDKQ 132 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + + AAEQC +P + LE LL WD QI+F DET ++ L + Sbjct: 133 QAHAVEAAEQCGATFVPEVAEMARLERLLSEWDTTRQILFCDETAAGAPTI--LGGLEPG 190 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 P A+LIGPEGG+ E+ L + +SLGPRILR Sbjct: 191 P-WAVLIGPEGGFSDRERARLAEMDCARAVSLGPRILR 227 >gi|209521966|ref|ZP_03270631.1| protein of unknown function DUF558 [Burkholderia sp. H160] gi|209497600|gb|EDZ97790.1| protein of unknown function DUF558 [Burkholderia sp. H160] Length = 232 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 18/236 (7%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQ 79 D + VLR++ GD+++LFNG+ GE+ +++ V + S R K+ ++++ Sbjct: 2 IALPDDVVRH-VTVLRLQPGDSLVLFNGQGGEYGAELVEVERRSARVKIRDFRAVEVEPP 60 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133 + +++D++I+K+VE+G P+ T + + + + Sbjct: 61 YRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATVRSVVRLTGERAQRRQQHWQGVVRA 120 Query: 134 AAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + EQC LP + P L + +++ + S L Sbjct: 121 SCEQCGRNRLPEVMPVQDFGAWLDTLSREPAPDELRLLLSPRAS---ISFAALPDAPPRG 177 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +LIGPEGG ++E+ + F T L LGPR+LR++TA +A +A + A G W Sbjct: 178 RVTLLIGPEGGLSADEEAAAVAQGF-TALGLGPRVLRTETAGIAVLAALSARWGGW 232 >gi|255659202|ref|ZP_05404611.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM 20544] gi|260848654|gb|EEX68661.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM 20544] Length = 248 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 16/249 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++RLF L + G H+L HV+R K G +++ + ++ +++ Sbjct: 1 MRRLFYKGILA--DTIEIRGADAHHLMHVMRAKPGQEVIVVDDENQVARMEMTRFTSDAV 58 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE + +K +++D+++QK+VE+G+ I PV + + Sbjct: 59 TMELVERLDADTESPIQLGLAMCLLKADKMDFVVQKAVELGVNCIVPVASHNCVVRYDAK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCGS 174 R + AA+QC L ++P TL+ L + D + + +F E + Sbjct: 119 KAKQRQQRWQKIADEAAKQCGRTVLVKVFPIETLKDFLSHAWYEDDMDSEFLFCYENEEN 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + L +LIGPEGG+ EE E + ++LGPRILR++TAAVA + Sbjct: 179 VSVRDCLQRTTS-ERYMLLIGPEGGFTLEEAEAVVKAGG-QSVTLGPRILRAETAAVAGL 236 Query: 235 ALVQAICGD 243 ++VQ GD Sbjct: 237 SIVQYEKGD 245 >gi|297590879|ref|ZP_06949517.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|297575765|gb|EFH94481.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312437954|gb|ADQ77025.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] Length = 253 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 3 NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 63 KIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 123 EAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + L V ++ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ + Sbjct: 241 ALSAISYE 248 >gi|76812178|ref|YP_334841.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei 1710b] gi|226196890|ref|ZP_03792469.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pakistan 9] gi|229269497|ref|YP_109550.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei K96243] gi|254190942|ref|ZP_04897448.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pasteur 52237] gi|254259381|ref|ZP_04950435.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a] gi|76581631|gb|ABA51106.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 1710b] gi|157938616|gb|EDO94286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pasteur 52237] gi|225931150|gb|EEH27158.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei Pakistan 9] gi|254218070|gb|EET07454.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a] Length = 255 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239 >gi|302385307|ref|YP_003821129.1| protein of unknown function DUF558 [Clostridium saccharolyticum WM1] gi|302195935|gb|ADL03506.1| protein of unknown function DUF558 [Clostridium saccharolyticum WM1] Length = 245 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + FV ++ + G +++ +VLRM G+ IL+ NG D ++L +I V + Sbjct: 1 MHHFFVSQDQIEESFIRILGPDVNHIKNVLRMGAGEEILVSNGVDKDYLCQILDVASAEV 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ T+ + + K ++++ +IQK+VE+G+ I PV T+ + Sbjct: 61 TAKILSVEEGGTELPARLYLFQGLPKGDKMELIIQKAVELGVYQIIPVETKRAVVRLDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENS 177 + R R + SAA+Q L +P + T L IV + + Sbjct: 121 KEESKLRRWRAVSESAAKQSGRLIIPEVAGVMTFPEALAFGKELDMIVIPFEHAKDMAKT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L +I +V I IGPEGG+ E + L ++LG RILR++TA +A ++++ Sbjct: 181 KEILSSIRPGMSVGIFIGPEGGFEDSEMDLAERLG-AKQITLGKRILRTETAGLAIVSVL 239 Query: 238 QAICGD 243 D Sbjct: 240 AFQLED 245 >gi|157844011|gb|ABV84512.1| hypothetical protein RMA_0218 [Rickettsia massiliae MTU5] Length = 283 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 137/242 (56%), Gaps = 9/242 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 41 MKYN----RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIND 96 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK+ + +++ Q + +S + + IK ++L I + ++G+ I P+ITR Q Sbjct: 97 IGKNNLSVRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQF 156 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + LT P I T++ LK +N +++A+E +NS+ Sbjct: 157 RSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSIL 214 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ + ++ I++GPEGG+ ++E E L S +SLG ILR++TAA+ A +VQ Sbjct: 215 RISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITA--IVQV 272 Query: 240 IC 241 Sbjct: 273 RL 274 >gi|83720201|ref|YP_441739.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia thailandensis E264] gi|257137908|ref|ZP_05586170.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia thailandensis E264] gi|83654026|gb|ABC38089.1| conserved hypothetical protein TIGR00046 [Burkholderia thailandensis E264] Length = 256 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 9 AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKR 67 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 68 GALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 127 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADET 171 + + R ++ EQC +P + P + L +++ + Sbjct: 128 GERADKRVSHWRGVVRASCEQCGRNRVPGVAPVRGFDAWLDALPDAPAAGELRLLLSPRA 187 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 188 SV---PFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFA-ALSLGPRVLRTET 240 >gi|114319523|ref|YP_741206.1| hypothetical protein Mlg_0361 [Alkalilimnicola ehrlichii MLHE-1] gi|114225917|gb|ABI55716.1| 16S rRNA m(3)U-1498 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 248 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-- 66 R+ VD PL + +L R++ GD ++LF+G+ GE+ +++ + + Sbjct: 5 RIHVDTPLAAGATLTLPAETTQHL-KAFRLRPGDELVLFDGRGGEYRARLEALERREARL 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 + + + + + + R+D+ +QK+VE+G+ I PV T Sbjct: 64 ALLGHHPVERESPLALTLVQGVARGERMDFTVQKAVELGVRRIVPVFTDNGVVRLEARRR 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENS 177 + ++A EQC +P + PP L + L + +V T G + Sbjct: 124 EKRRQHWQRVAVAACEQCGRNRVPEVAPPRPLAEVWPELAGGEAGQGLVL---TPGGRSL 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + +LIGPEGG E P+ LGPRILR++TA + A+A + Sbjct: 181 RALADAHPELRRAWLLIGPEGGLSDAEVARACEAG-AEPVGLGPRILRTETAGITALAAL 239 Query: 238 QAICGD 243 Q + GD Sbjct: 240 QLLHGD 245 >gi|223985669|ref|ZP_03635717.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM 12042] gi|223962360|gb|EEF66824.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM 12042] Length = 258 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++++F+ + + + Q H+L VLRMKEG+ + + + + + + G+ Sbjct: 21 NMQQIFIQQKTHVGSVIEPDPQQRHHLQRVLRMKEGETLRVIDAEGAVFCGVLDGAGQ-- 78 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 E + + + IK R D+++QK E+G+ I P + + Sbjct: 79 IQITELLDEDRELPVTLTLVAGLIKGERWDWLLQKCTELGVSRIVPFQSSRTVVKLESDK 138 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R + A++QC P + P L + + DE Sbjct: 139 VDKKLERWQKIVQEASQQCKRTQRPQVCAPIELADAGAWRSEQNFVAYEDEALHGGLLSA 198 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +L +V ++IGPEGG+ E E L + + SLG RILR++TAAVAA+ L A Sbjct: 199 QLE---KGRSVTLVIGPEGGFSPAEIERLQTQGY-RCCSLGKRILRAETAAVAAVCLAGA 254 Query: 240 IC 241 + Sbjct: 255 VL 256 >gi|325287492|ref|YP_004263282.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga lytica DSM 7489] gi|324322946|gb|ADY30411.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga lytica DSM 7489] Length = 235 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 8/237 (3%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++ LF + L +Q ++ ++ VLR EGD + + NG + +KI K Sbjct: 1 MQ-LFYNSTLDNSISQFVFPPEESKHIVKVLRKVEGDELYITNGNGYLFTAKIMVADVKK 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + ++ + + + +P K +R ++ ++K+ E+G+ I P+I +++ Sbjct: 60 CKAQITSKEKKHRPMHWLHIAVAPTKMNDRFEWFLEKATEIGVDEITPIICDHSERKVLK 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R+ SA +Q LP + P + +H + A C E +E Sbjct: 120 LERMEKVLQSAMKQSLQTYLPKLNAPIPYAEFV-QKEHKDLLFIAH--CEEEEKVELKRR 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +A +V ILIGPEG + S E + + F+ P+SLG LR++TAA+ A A V I Sbjct: 177 VAADKDVTILIGPEGDFSSAEIKQAYVNGFI-PVSLGKNRLRTETAAIVACATVAMI 232 >gi|258424005|ref|ZP_05686887.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257845626|gb|EEV69658.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 250 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVSSKIILTFNDQTVYLCEIADITSDK 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + L V ++ GPEGG E + T + LGPRILR++TA + A Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|291533062|emb|CBL06175.1| RNA methyltransferase, RsmE family [Megamonas hypermegale ART12/1] Length = 246 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 114/246 (46%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65 ++RLF+D L K GD +L + +R++ + + + +K IS ++ Sbjct: 1 MRRLFIDECLSEDITIK--GDDAKHLLYAMRVRPEQVFTIVDKESKVAQAKVISCTSDTV 58 Query: 66 RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + K+ + +V K +++++++QK+VE+G ++ PV++ + Sbjct: 59 QLKLLQYIEDADTEAPIEVVVAQCLPKGDKMEFIVQKAVELGAASVVPVVSHHCVVKYDE 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + A +QC P + +LE L +++ + + + E S Sbjct: 119 KKKLARQQKWQKIADEAVKQCGRTIKPTVEAIVSLEQLAQDYTDYARFICYE--AEDEQS 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++ A ILIGPEGG+ EE + F +S+G RILR++TA++AA+ +V Sbjct: 177 FKEMLQSADSKKYLILIGPEGGFAPEEVQLCKDAGF-KSISMGKRILRAETASIAALTIV 235 Query: 238 QAICGD 243 GD Sbjct: 236 MYEKGD 241 >gi|83589451|ref|YP_429460.1| hypothetical protein Moth_0587 [Moorella thermoacetica ATCC 39073] gi|83572365|gb|ABC18917.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073] Length = 246 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 8/240 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+ + G+ H+ VLR+++G++I L + + ++I + + + Sbjct: 5 FFLPIVVAPGETVLLEGENAHHAIRVLRLRQGESITLADSNGQGYRAEIVAITEGRVAAA 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 ++ S + V K +++D +I+K E+G+ I + T + Q Sbjct: 65 IKDPLDSPEPRVRVTLYQGWPKGDKMDLIIEKCTELGVDRIVVLATERSIPRPDQQTCAR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +R + +AA Q +P + P L L + ++ E + + L Sbjct: 125 RRERWQQKAHAAARQSRRHRIPVVDGPLGLAEALVKLRPDTLLLVPWEEERTRDLKSILA 184 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + +A+LIGPEGG E + + PL+LGPRILR++TA +A +A + G Sbjct: 185 TVPADRELALLIGPEGGLSRAEVDLACRFGGL-PLTLGPRILRTETAGLACLAAIMYAMG 243 >gi|27468182|ref|NP_764819.1| hypothetical protein SE1264 [Staphylococcus epidermidis ATCC 12228] gi|57867034|ref|YP_188721.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus epidermidis RP62A] gi|251810994|ref|ZP_04825467.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis BCM-HMP0060] gi|293366462|ref|ZP_06613139.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|27315728|gb|AAO04863.1|AE016748_97 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637692|gb|AAW54480.1| conserved hypothetical protein TIGR00046 [Staphylococcus epidermidis RP62A] gi|251805504|gb|EES58161.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis BCM-HMP0060] gi|291319231|gb|EFE59600.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] Length = 253 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +L+R F++ + YH++ +V+R KEG NI++ + + KI + + Sbjct: 3 NLQRYFMNQSADENQCFFIENKEDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQ 62 Query: 64 SIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 SI K VE Q + ++ IK ++ ++MIQK+ EMG V + Sbjct: 63 SIEIKLVEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLN 122 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + R + AAEQ LT+P I + L+ + ++ A E Sbjct: 123 DSKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + + V I+ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ V Sbjct: 241 ALSAVSYE 248 >gi|300703042|ref|YP_003744644.1| ribosomal RNA small subunit methyltransferase e (rsme) [Ralstonia solanacearum CFBP2957] gi|299070705|emb|CBJ42000.1| putative ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum CFBP2957] Length = 249 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 115/249 (46%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R ++D L T ++ HVLR+ GD++ LF+G E+ +++ + + + Sbjct: 3 LPRFYIDSLLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINRRDV 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ T+ + +++D++I+K+VE+G+ AI P+ T + + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERSVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGSEN 176 + + +A EQC +P + P TTL L +++ + S Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTVAKASDRARVMLSPRGSQSLT 181 Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +LIGPEGG +E+ + ++ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAAQSRERIDSAGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + G++ Sbjct: 241 ALHTALGEF 249 >gi|323143545|ref|ZP_08078222.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066] gi|322416608|gb|EFY07265.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066] Length = 226 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 13/230 (5%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQ 79 + S + +L VLR KEGD +F+G E+ +K+ G ++ E + S Sbjct: 2 EITLSENGSGHLCRVLRFKEGDLFNIFDGIGHEFKAKLVRSGNKAAAQILETVANSSESP 61 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133 ++ + +++D +QK+VE+G+ I P+ + + + +D + +S Sbjct: 62 LQIELGQVISRGDKMDLTVQKAVELGIFEITPLTSIRCNVKLDEKRSFKKVDSWQKIAVS 121 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 A EQ +P + T L+ + + +L+ A + +L Sbjct: 122 ACEQSGRSFVPKVNEITDLKTWCSKDREALNLTLDPLSSLRLKNLKPTAA-----KIRLL 176 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG +E F+ +SLGPRILR++TAA+ A++++ + GD Sbjct: 177 IGPEGGLSQDEINDAAENGFI-GVSLGPRILRTETAALVALSILGSHFGD 225 >gi|126439667|ref|YP_001060446.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei 668] gi|237813838|ref|YP_002898289.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei MSHR346] gi|254199135|ref|ZP_04905550.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13] gi|126219160|gb|ABN82666.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 668] gi|169656965|gb|EDS88362.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13] gi|237506144|gb|ACQ98462.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei MSHR346] Length = 255 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239 >gi|229220687|ref|YP_620039.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia AU 1054] gi|229220796|ref|YP_834281.2| hypothetical protein Bcen2424_0635 [Burkholderia cenocepacia HI2424] Length = 255 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + + R FVD L D + VLR++ GD + LF+G G++ +++ V K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 66 Query: 64 SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 S +V+ + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 S---SPFASLPDAPPAAAVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 239 >gi|105891901|gb|ABF75066.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia cenocepacia AU 1054] gi|116646747|gb|ABK07388.1| protein of unknown function DUF558 [Burkholderia cenocepacia HI2424] Length = 262 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + + R FVD L D + VLR++ GD + LF+G G++ +++ V K Sbjct: 15 AAVPRFFVDAALRADATLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 73 Query: 64 SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 S +V+ + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 S---SPFASLPDAPPAAAVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 246 >gi|51473368|ref|YP_067125.1| hypothetical protein RT0159 [Rickettsia typhi str. Wilmington] gi|51459680|gb|AAU03643.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 240 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 135/241 (56%), Gaps = 8/241 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + D HY+ VLR+K D++ +FNG DGE+L+ I+ Sbjct: 1 MKYN----RIYINSHLAENSKIELVRDNVHYVKTVLRLKINDSLRIFNGSDGEFLAHITK 56 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK+ I + Q + + + + IK+++L +I + ++G+ I P+IT Q Sbjct: 57 IGKNNISVVLTEQLKKAYIEPALTLAVAIIKSDKLMLIINMATQLGITKIIPLITSRCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + L P I TL+ LK +N I++A+E +NS+ Sbjct: 117 KTVNIERLIKCVIEATEQSERLNPPIIEHAITLKDYLK--KNNNLILYANEHEKVKNSIL 174 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ ++ ++AI+IGPEGG+ ++E E L +SLG ILR++TAA+ +A V+ Sbjct: 175 RISSLLA-NDIAIIIGPEGGFTNDELELLALYKNTQSISLGSNILRTETAAITVIAQVRL 233 Query: 240 I 240 + Sbjct: 234 L 234 >gi|229597240|ref|YP_001807272.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria MC40-6] Length = 255 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L + + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 66 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 SV---PFASLPDAPPAAEVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 239 >gi|150025667|ref|YP_001296493.1| hypothetical protein FP1617 [Flavobacterium psychrophilum JIP02/86] gi|149772208|emb|CAL43684.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 234 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 8/231 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + + ++ ++ VLR EGD + + NG + +K+ K Sbjct: 1 MQLFYNPEINTELKEFSFDKEESKHIIKVLRKTEGDILHVTNGLGNLFSTKVILASEKKC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+E Q + +P K +R ++ ++K+ EMG+ I P+I ++ Sbjct: 61 TVKIETTETYQPTDFYIHLAVAPTKMNDRFEWFLEKATEMGVHEITPIICDRSERKIVKN 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHA 183 +R +SA +Q LP + P + + + + D N I +ET N + Sbjct: 121 ERFDKIILSAMKQSLQFFLPKLNEPISFKDFINEQHDGNLCIAHCEET----NKKLLKNT 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 I ILIGPEG + +E + + ++ P+SLG LR++TAAV A Sbjct: 177 IKAKEKYTILIGPEGDFSEKEIQLALANNYI-PVSLGNTRLRTETAAVVAC 226 >gi|217420819|ref|ZP_03452324.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 576] gi|217396231|gb|EEC36248.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 576] Length = 255 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTTRGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239 >gi|332531193|ref|ZP_08407106.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC 19624] gi|332039300|gb|EGI75713.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC 19624] Length = 248 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 19/246 (7%) Query: 7 LKRLFVDFP----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + R L + + + + VLR++ GD + LFNG+ GEW + + +G Sbjct: 1 MPRFHCPEEPSSVLRAGGEVELPPETARH-VQVLRLQPGDTLTLFNGRSGEWTATVLRMG 59 Query: 63 K-SIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 + S+ +V++ + + DV R+D++++K+VE+G+ +I+P+ T + Sbjct: 60 RASVTVRVDHHHAVEREAPLDVHLAVGMPANERMDWLVEKAVELGVASIQPLQTERSVLR 119 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADET 171 + + I+A EQC LP ++ L+ + Q ++ D+ Sbjct: 120 LSGERALKKQLHWQGIAIAACEQCGRNRLPPVHAVRPLQDVAAWSPPEVQRRFVLSLDDD 179 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 C + + L + +V +L GPEGG E++ + F P+SLG R LR++TA + Sbjct: 180 CVPIS--QVLASRGSTGSVLLLSGPEGGLSPTEEQAARAAGF-QPVSLGQRTLRAETAPL 236 Query: 232 AAMALV 237 AA+A++ Sbjct: 237 AALAVL 242 >gi|221133775|ref|ZP_03560080.1| hypothetical protein GHTCC_02514 [Glaciecola sp. HTCC2999] Length = 244 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 14/231 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R+FV PL + + H+L +VLR+K+ ++LFNG E+ ++I+ V K Sbjct: 2 RITRVFVPEPLIVDAALTIDNESAHHLINVLRVKQDQPLVLFNGDGNEYSAQINEVHKRK 61 Query: 66 RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + K +R++ ++QK+ E+G+ I P+IT+ Sbjct: 62 VIVNVDAKLAIGAESKFPIHLGQGIAKGDRMETVLQKATELGVTEITPIITQRCNVKLSP 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + I A EQ LP ++PP TL K +I F + Sbjct: 122 ERWAKKLVQWEKVIIGACEQSGRNVLPILHPPITLSEWCKQSTEQYRITFDPHA---QQH 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L+ L H + ILIGPEGG+ E F T + +GPR+LR++T Sbjct: 179 LQALPVTQHG--IRILIGPEGGFSEAETYGAEQTGFNT-VKIGPRVLRTET 226 >gi|257084824|ref|ZP_05579185.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992854|gb|EEU80156.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 250 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K K + + YH++ V+RM D L L++I + + Sbjct: 1 MQRYFIKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + ++ + + +V K ++L++++QK E+G V+ + Sbjct: 61 YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ AAEQ P + + ++ +D ++ A E + Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDTYDTVLVAYEESAKQGEK 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + +L GPEGG+ +E E LGPRILR++TA + + Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239 Query: 235 ALVQA 239 + V Sbjct: 240 SAVSY 244 >gi|134280575|ref|ZP_01767286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 305] gi|134248582|gb|EBA48665.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei 305] Length = 255 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V ++++++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMEWVIEKAVELGVAAVAPLSTARGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239 >gi|289423857|ref|ZP_06425650.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus anaerobius 653-L] gi|289155634|gb|EFD04306.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus anaerobius 653-L] Length = 258 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 21/256 (8%) Query: 7 LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + R FVD I TQ + GD +++ VLR GD + + +G++ E++ +I + K Sbjct: 1 MDRFFVDRE-NIDTQARNLVILGDDVKHISKVLRYSVGDELEVCDGQNKEYICRIDSMDK 59 Query: 64 SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 + +E + + ++ K+ +++ ++QK E G+ I V T + Sbjct: 60 TEIGLSIIEEKDVDRESPIRIKLYQGLPKSTKMEIILQKLTECGVAEIILVNTARSVVNI 119 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + +DR + AA+Q +P + + + L++ + N + E GS Sbjct: 120 DDKKSEKKLDRWQRIVYEAAKQSKRGIIPDLKGIYSFKEALRDMEVNDINIMPYEEEGSL 179 Query: 176 NSLEKLHA------IAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + L + I + + I IGPEGG+ +E + + +GPRI R++ Sbjct: 180 GIKDLLRSEGIQQIIKENKSATIGIFIGPEGGFTEDENAKVKEAGG-HSVKMGPRIFRTE 238 Query: 228 TAAVAAMALVQAICGD 243 TA++ A ++ GD Sbjct: 239 TASIVATSICLYELGD 254 >gi|253732230|ref|ZP_04866395.1| protein of hypothetical function DUF558 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724019|gb|EES92748.1| protein of hypothetical function DUF558 [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 253 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 +++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 3 NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62 Query: 64 SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 63 KIAVDLKEKQNINTELSVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + AAEQ L +P I + L+ + D+ I+ A E + Sbjct: 123 EAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182 Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L + L V ++ GPEGG E + T + LGPRILR++TA + Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240 Query: 233 AMALVQAI 240 A++ + Sbjct: 241 ALSAISYE 248 >gi|332520272|ref|ZP_08396734.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4] gi|332043625|gb|EGI79820.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4] Length = 234 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 6/230 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + + Q S ++ ++ VLR ++GD + + NGK + + I KS Sbjct: 1 MQLFYSPDISKNQDQFTFSKEESRHIVKVLRKRDGDILHITNGKGDVFTAVILIAAIKSC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 +++ ++ +P K +R ++ ++K+ E+G+ +I P+I +++ Sbjct: 61 TVEIKEVVTQNPLNYNLHLAVAPTKMNDRYEWFLEKATEIGISSITPIICDHSERKVIKE 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DR SA +Q LP + P + LK D N + A ++ SL+K+ + Sbjct: 121 DRFEKILQSAMKQSLSAYLPKLNPAIAFKEFLKQ-DFNSALYIAHCEETNKKSLKKV--L 177 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ++ ILIGPEG + ++E E + ++ P++LG LR++TAA+ A Sbjct: 178 QTNTDITILIGPEGDFSTKEIELALANNYI-PVTLGETRLRTETAAIVAC 226 >gi|222053521|ref|YP_002535883.1| protein of unknown function DUF558 [Geobacter sp. FRC-32] gi|221562810|gb|ACM18782.1| protein of unknown function DUF558 [Geobacter sp. FRC-32] Length = 246 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63 ++R VD + +G Y ++A VLR+K+G ++L +G+ GE+ I + Sbjct: 1 MRRFIVDKRDIDDAEAVITGYLYRHMAKVLRLKQGTAVMLTDGEGGEYEGVIESIDSTSL 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R + K ++L+Y++QK E+G I P + Sbjct: 61 RVRVVRRETLMVDDGGPQITIYQGLPKGDKLEYILQKCTELGAAGIVPFAASRSIARISP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + +DR + AA Q T+P + L +L+ H+ +++ +E + Sbjct: 121 QRSAGRVDRWQKIAAEAARQSRRATVPRVSLADDLSQVLQLAQHSVKLLLWEEEKANL-L 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L ++ ++ +LIGPEGG+ EE S F+ P+S+G RI+R++TA++ ++++ Sbjct: 180 RETLSGLSAPNDIGVLIGPEGGFSPEEAAAASSAGFI-PISMGRRIVRTETASLIILSIL 238 Query: 238 QAICGD 243 Q GD Sbjct: 239 QYHWGD 244 >gi|70726340|ref|YP_253254.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus haemolyticus JCSC1435] gi|68447064|dbj|BAE04648.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 250 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 107/247 (43%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + H++ +V+R G+ I++ + S+I + +S Sbjct: 1 MQRYFIDQNADESQRFFITNKEDIHHITNVMRNTIGNQIIITFKDKIVFKSEIITIENES 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I K+ Q ++ V IK ++ +++IQK+ E+G + V + Sbjct: 61 IEIKLIEQIDINSELPVQVTICSGLIKADKYEWLIQKATELGADSFIVVEMDRSVVKLTP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I + L + +H I+ A E Sbjct: 121 NKVQKKLERWQKIIKEAAEQSYRLIIPNIIFKSNLNEIYDTINHYDYILLAYEDEAKRGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + E L + ++ GPEGG+ +E L+ F + LGPRILR++TA + A Sbjct: 181 VSLFKETLKKFKTNDRILLIFGPEGGFSEKEITLLNETSFN--VGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|17547482|ref|NP_520884.1| hypothetical protein RSc2763 [Ralstonia solanacearum GMI1000] gi|17429785|emb|CAD16470.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 118/249 (47%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R +D PL T ++ HVLR+ GD++ LF+G E+ +++ + + Sbjct: 3 LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGQEFRARLDAINRRDA 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ T+ + +++D++I+K+VE+G+ AI P+ T + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + +A EQC +P + P L L + + GSE Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPAVSPVAPLRDWLAAAKASARARVMLSPRGSEPLT 181 Query: 179 E-KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + + I + + +LIGPEGG +E+ + ++ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAVQSRERIGSAGIELLIGPEGGLSPDEEALAEAAGYL-PLTLGRRILRTESAALVAVS 240 Query: 236 LVQAICGDW 244 + A+ G++ Sbjct: 241 ALHAVLGEF 249 >gi|255656430|ref|ZP_05401839.1| hypothetical protein CdifQCD-2_12199 [Clostridium difficile QCD-23m63] gi|296450123|ref|ZP_06891884.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08] gi|296878504|ref|ZP_06902509.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07] gi|296260886|gb|EFH07720.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08] gi|296430311|gb|EFH16153.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07] Length = 252 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 12/248 (4%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FV+ G+ +++ VLR K G+ + + + + E++ +I + KS Sbjct: 1 MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRYKPGEKLEICDKNNNEYICEIVNIDKS 60 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 I +E ++ + ++ K +++ ++QK E+G+ I V T+ + Sbjct: 61 IVNLNILEKVDINRESELKIRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVAKVD 120 Query: 123 NM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +R AA+Q +P + T + L++ N + E + Sbjct: 121 DKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLTFKEALEDMKKNNINICPYENERTVP 180 Query: 177 SLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L ++I +V I IGPEGG+ EE E + +SLGPRILR++TA+V A Sbjct: 181 MKHALQNCDSNIDSVGIFIGPEGGFSEEEIEQIQKNN-CNVVSLGPRILRTETASVVAST 239 Query: 236 LVQAICGD 243 + D Sbjct: 240 IALYELSD 247 >gi|313897356|ref|ZP_07830899.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2] gi|312957726|gb|EFR39351.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2] Length = 252 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + +Q H++ V+RM++GD I + + L+++ Y + Sbjct: 1 MQQYFVNTLAMPGELIPMTKEQTHHIRRVMRMQQGDVIRVADNSGRVLLAEVEYHQEEAA 60 Query: 67 FKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +V + R ++ IK + DY++QKS E+G+ I P ++ + Sbjct: 61 ARVVREVRDCSQTSVELILAQGMIKGEKWDYLLQKSAELGVAEIIPFVSSRCVVKIKDEK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSL 178 + + R A EQC TL + PP T L D + +++ ++ C SE Sbjct: 121 SEKKIVRWNKILCEACEQCKRSTLVRLQPPCTFSQ-LSQIDADLRLIAYEDADCKSERLC 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E L A V +++G EGG+ ++E E L + F +SLG RILR++TAA++ + Sbjct: 180 EVLRAHPSPKRVLMVVGSEGGFSADEVEALTATGF-HRVSLGGRILRAETAAISLL 234 >gi|163795742|ref|ZP_02189707.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199] gi|159179038|gb|EDP63573.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199] Length = 253 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 3/217 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RL+V PL Q HYL VLR+ G+ + LFNG+DGEWL++I +GK Sbjct: 8 RLYVTAPLAEGAVIGLESAQAHYLRSVLRLGPGEAVALFNGRDGEWLARIDGIGKGWASL 67 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V Q+ Q + D+ F+PIK R+D+ QK+ E+G + PV+TR+T N DR+ Sbjct: 68 VVANQTHPQCPEPDLWLAFAPIKRARIDFTAQKATELGASLLWPVMTRHTMVDRVNTDRL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH- 186 I AAEQ D LT+P + PT+L+ L+ W + ++ DE+ E L A Sbjct: 128 TANAIEAAEQSDRLTVPEVREPTSLDKLIAEWPEDRALLLCDESGTGLGIAEALAAAGPS 187 Query: 187 -IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 +IGPEGG+ EE + L LPFVT + LGPR Sbjct: 188 VRRRAGFVIGPEGGFAQEELDRLRKLPFVTAVGLGPR 224 >gi|56963427|ref|YP_175158.1| hypothetical protein ABC1662 [Bacillus clausii KSM-K16] gi|56909670|dbj|BAD64197.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 248 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ + +GD ++ V+RM+ GD ++ N L ++S S Sbjct: 1 MQRYFIKNEQLTNEVVEITGDDAAHITKVMRMQAGDEVICVNEDGKAVLVQLSQFDPSSV 60 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118 + V K ++L+ ++QK E+G A P ++ + Sbjct: 61 KGTVLNEMDNETELPIRVTVAQGLPKGDKLETIVQKGTELGAYAFAPFSASRSIVKWDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R++ AAEQ L +P + P L+ + + H + DE + Sbjct: 121 KGAKKTERLQKIAKEAAEQAHRLFVPNVAKPVPLKVVAEALTHYDVCIVCDEEEAKQGEK 180 Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + ++ +++GPEGG EE L + V+ S+GPRI+R++TAA+ + Sbjct: 181 ANLKRAFAMLKPGLSLLVIVGPEGGLTREEVALLSAKGAVS-CSIGPRIVRTETAAMYVL 239 Query: 235 ALVQAIC 241 A + Sbjct: 240 AALSYQF 246 >gi|300690423|ref|YP_003751418.1| ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum PSI07] gi|299077483|emb|CBJ50108.1| putative ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia solanacearum PSI07] Length = 249 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 13/249 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R +D PL T ++ HVLR+ GD++ LF+G E+ +++ + + Sbjct: 3 LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGREFRARLDAINRRDA 61 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + ++ T+ + +++D++I+K+VE+G+ AI P+ + Sbjct: 62 TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQAERGVVRLSGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSEN 176 + + +A EQC +P + P TL L +++ + S Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPAVSPVATLRDWLAAAKTSDRARVMLSPRGSQSLT 181 Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +LIGPEGG +E+ + ++ PL+LG RILR+++AA+ A++ Sbjct: 182 QWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAIS 240 Query: 236 LVQAICGDW 244 + AI G++ Sbjct: 241 ALHAILGEF 249 >gi|315635117|ref|ZP_07890395.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393] gi|315476079|gb|EFU66833.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393] Length = 211 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 13/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLD 95 M+ GD + LF+G + + + I+ + K + Q + + + R++ Sbjct: 1 MQPGDQLELFDGSNHIYQAVINAITKKSVDVDILSRQLDDRESPLAIHLGQVISRGERME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKSVE+G+ I P+ + + + + + I+A EQC T+P I P Sbjct: 61 FTIQKSVELGVNVITPLWSERCGVKLDGERMEKKIQQWQKIAIAACEQCGRNTIPEIRPL 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 L+ D ++ S +L + V +LIG EGG +E Sbjct: 121 MKLQQWCAEPDDALKLNLHPRASYSIRTLPAISKA----GVRLLIGSEGGLSPQEIAQTE 176 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 FV + LG R+LR++TAA+AA+ +Q GD Sbjct: 177 EHGFVE-VLLGKRVLRTETAAMAAITALQVCFGD 209 >gi|161986456|ref|YP_311922.2| 16S ribosomal RNA methyltransferase RsmE [Shigella sonnei Ss046] Length = 244 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 19/249 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN---GKDGEWLSKISYVG 62 + R++ L + D ++ R G N G + ++I+ Sbjct: 2 RIPRIYHPETLTSPSHIALCEDAANHNRA--RTGHGARGRGCNCLKGTTQVFDAEITSAS 59 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 K + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 60 KKSVEVNVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVK 119 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + + + + I+A EQC +P I P LE D ++ S Sbjct: 120 LDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNS 179 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 180 INTLPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAI 233 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 234 TALQVRFGD 242 >gi|224476685|ref|YP_002634291.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus carnosus subsp. carnosus TM300] gi|222421292|emb|CAL28106.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 250 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F++ I + + + H+++ V+R + D I++ + KI + Sbjct: 1 MQRYFINQNADINQRFFITEKEDIHHISTVMRNQPNDFIIVTFNHGKVYKCKIISIHNEE 60 Query: 66 RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V +K ++ ++++QK E+G PV + Sbjct: 61 IEIELNEELNSDTELPVEVTICSGLLKADKYEWLLQKCTELGASHFIPVQMDRSIVKLNQ 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R AAEQ L +P + L+ + N D ++ A E E Sbjct: 121 NKIEKKLVRWNKIVKEAAEQSYRLIIPTFEFISNLKQVYVNIDKYDYVLVAYEDAAKEGE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + L + I+ GPEGG EE + LG RILR++TA + A Sbjct: 181 ISQLKKTLQQFQSGNRILIVFGPEGGLSEEEVALF--QGNSEIVGLGKRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|238021924|ref|ZP_04602350.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147] gi|237866538|gb|EEP67580.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147] Length = 239 Score = 232 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 17/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ PL T + ++ HVLR+ GDNI LFNG ++ + + +GK Sbjct: 1 MPRFYLPAPLAPHTTFSLPDNIVRHI-HVLRLNAGDNITLFNGTGSDFDATLQEIGKRHA 59 Query: 67 FKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R +S ++ + + R+D+ +QKSVE+G+ AI+P+I+ Sbjct: 60 ECHITAQRQPENESALNITLVQAVSSGERMDFTLQKSVELGVRAIQPMISERCVVRLSGD 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + I+A EQ +P + P + L+ ++ S Sbjct: 120 RADKRVQRWQDIVIAACEQSGRSIVPTVLPIVSFSDYLRQMPPELHLMM------SLRRA 173 Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L IA + ++ ++IGPEGG+ E++ V ++LG R+LR++TAA+AAMA + Sbjct: 174 QALRDIAPVSQSLRLMIGPEGGWTPAEEQAALDAG-VQTITLGKRVLRTETAAMAAMAAM 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QVLWGDF 239 >gi|167904305|ref|ZP_02491510.1| hypothetical protein BpseN_18786 [Burkholderia pseudomallei NCTC 13177] Length = 262 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVIRLS 135 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 195 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 248 >gi|257416411|ref|ZP_05593405.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158239|gb|EEU88199.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 250 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K K + + YH++ V+RM D L L++I + + Sbjct: 1 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + ++ + + +V K ++L++++QK E+G V+ + Sbjct: 61 YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ AAEQ P + + ++ +D ++ A E + Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPTVSLVKKTQEIIAQFDSYDTVLVAYEESAKQGEK 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + +L GPEGG+ +E E LGPRILR++TA + + Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239 Query: 235 ALVQA 239 + V Sbjct: 240 SAVSY 244 >gi|171320065|ref|ZP_02909134.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5] gi|171094694|gb|EDT39739.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5] Length = 262 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L + + A VLR++ GD + LF+G G++ +++ + K Sbjct: 15 AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 73 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 NALAQIEAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTVRGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + P L + D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDSLPPAPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 S---IPFVSLPDAPPATAVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246 >gi|308174332|ref|YP_003921037.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7] gi|307607196|emb|CBI43567.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7] Length = 256 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 103/248 (41%), Gaps = 16/248 (6%) Query: 7 LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ + +G+ H++A+V+RM G I+ + E L + + K Sbjct: 1 MQRYFIELTKQEMDETPDFHITGEDVHHIANVMRMSAGGRIICCSKDGHEALCLLKEISK 60 Query: 64 SI--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 E+ ++ ++ K ++L+++IQK E+G P + Sbjct: 61 DHISCSVAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + T LL+ ++ + V A E + Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ 180 Query: 176 NS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +L ++ ++ I+ GPEGG E + L V LGPRILR++TA + Sbjct: 181 GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ V Sbjct: 240 YALSAVSY 247 >gi|328554279|gb|AEB24771.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus amyloliquefaciens TA208] gi|328912676|gb|AEB64272.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens LL3] Length = 256 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 16/248 (6%) Query: 7 LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 ++R F++ + +G+ H++A+V+RM G I+ + E L + V K Sbjct: 1 MQRYFIELTKQEMDESPDFHITGEDVHHIANVMRMSAGGRIICCSKDGHEALCLLKEVSK 60 Query: 64 SI--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 E+ ++ ++ K ++L+++IQK E+G P + Sbjct: 61 DHISCSVAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL 120 Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + +R AAEQ +P + T LL+ ++ + V A E + Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ 180 Query: 176 NS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +L ++ ++ I+ GPEGG E + L V LGPRILR++TA + Sbjct: 181 GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPL 239 Query: 232 AAMALVQA 239 A++ V Sbjct: 240 YALSAVSY 247 >gi|316932695|ref|YP_004107677.1| hypothetical protein Rpdx1_1321 [Rhodopseudomonas palustris DX-1] gi|315600409|gb|ADU42944.1| protein of unknown function DUF558 [Rhodopseudomonas palustris DX-1] Length = 257 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 3/230 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RLFVD L Q DQ +YL +VLR+ G ++L FNG+DGEW + I+ Sbjct: 3 RYDFRSPRLFVDATLAPGAQVPLERDQSNYLGNVLRLGAGADVLTFNGRDGEWRATIAGR 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + +V Q+R Q + DV Y+F+P+K RLDYM QK+VEMG G +RPV+T++TQ Sbjct: 63 KRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLRPVLTQHTQVHR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSL-- 178 N DR+R I AAEQC IL+L + P L+ L +VF DE + + Sbjct: 123 LNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLAGRASGERLLVFCDEDAEIADPVAA 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A V +L+GPEGG+ +EE++ L P + L+LGPRI+R+DT Sbjct: 183 LAAARPAATKGVDLLVGPEGGFSAEERDVLLKQPNILRLALGPRIMRADT 232 >gi|73856980|gb|AAZ89687.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 253 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 19/249 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN---GKDGEWLSKISYVG 62 + R++ L + D ++ R G N G + ++I+ Sbjct: 11 RIPRIYHPETLTSPSHIALCEDAANHNRA--RTGHGARGRGCNCLKGTTQVFDAEITSAS 68 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 K + + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 69 KKSVEVNVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVK 128 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + + + + I+A EQC +P I P LE D ++ S Sbjct: 129 LDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNS 188 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+L + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ Sbjct: 189 INTLPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAI 242 Query: 235 ALVQAICGD 243 +Q GD Sbjct: 243 TALQVRFGD 251 >gi|299531912|ref|ZP_07045312.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni S44] gi|298720087|gb|EFI61044.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni S44] Length = 246 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 24/252 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60 + R PL I + + VLR + GD I LF G+ GE+ + I++ Sbjct: 1 MPRYHCPIPLHIGNELDLPAGAARH-VQVLRHQPGDVITLFEGQTGNGFTGGEFQATITH 59 Query: 61 VGKS-IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 +G+S + +V+ S ++ + + V + R+D++++K+ E+G+ +I+PV+ + Sbjct: 60 MGRSDVGVRVDSHSPAEREAERVVHLVVGMPANERMDWLVEKATELGVASIQPVMAARSV 119 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFA 168 ++R ++ +SA EQC +P I+ P L L++ D ++V Sbjct: 120 LKLKGDRADKKIERWQSIAVSACEQCGRNQVPVIHAPLPLADWLRSKDAPATDTTRLVL- 178 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E + A V +L GPEGG ++E++ + P SLG R+LR++T Sbjct: 179 ---SLREGNQPLRTAAGDAQTVWVLHGPEGGLTAQEEDWALEQGW-KPASLGSRVLRAET 234 Query: 229 AAVAAMALVQAI 240 A+VAA++L+ Sbjct: 235 ASVAALSLLALE 246 >gi|256961537|ref|ZP_05565708.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256952033|gb|EEU68665.1| conserved hypothetical protein [Enterococcus faecalis Merz96] Length = 250 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K K + + YH++ V+RM D+ L L++I + + Sbjct: 1 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + ++ + + +V K ++L++++QK E+G V+ + Sbjct: 61 YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ AAEQ P + + ++ +D ++ A E + Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + +L GPEGG+ +E E LGPRILR++TA + + Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239 Query: 235 ALVQA 239 + V Sbjct: 240 SAVSY 244 >gi|73662489|ref|YP_301270.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495004|dbj|BAE18325.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 250 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++R F+D + + + H++++V+R + D I++ + K+ +G + Sbjct: 1 MQRYFIDQNADVNQRFCITDQGDIHHISNVMRHQVDDYIIITFADHYVYKCKLVNIGAEG 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I +E + T+ +V IK+++ ++M+QKS E+G V + + Sbjct: 61 IMVSLEERIDVDTELPQNVTICSGLIKSDKYEWMLQKSTELGASEFIAVGMKRSVVKITE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ L +P I TL +LK+ I+ A E Sbjct: 121 NKIAKKLERWQKIIKEAAEQSYRLAIPTIQYQATLNDVLKSTKTYDYILIAYEDAAKSGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + ++ V I+ GPEGG +E L + + + LGPRILR++TA + Sbjct: 181 VSQFKSLVQQFKPNDKVLIIFGPEGGLDEDEVSLLQDVGYQ--IGLGPRILRAETAPLYV 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSALSFE 245 >gi|229594326|ref|YP_001499059.2| 16S ribosomal RNA methyltransferase RsmE [Rickettsia massiliae MTU5] Length = 243 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 137/242 (56%), Gaps = 9/242 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIND 56 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK+ + +++ Q + +S + + IK ++L I + ++G+ I P+ITR Q Sbjct: 57 IGKNNLSVRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + LT P I T++ LK +N +++A+E +NS+ Sbjct: 117 RSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSIL 174 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ + ++ I++GPEGG+ ++E E L S +SLG ILR++TAA+ A +VQ Sbjct: 175 RISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITA--IVQV 232 Query: 240 IC 241 Sbjct: 233 RL 234 >gi|255972384|ref|ZP_05422970.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975487|ref|ZP_05426073.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256619449|ref|ZP_05476295.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256762904|ref|ZP_05503484.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853489|ref|ZP_05558859.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256959288|ref|ZP_05563459.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257079354|ref|ZP_05573715.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257082206|ref|ZP_05576567.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257090256|ref|ZP_05584617.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257422237|ref|ZP_05599227.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294779744|ref|ZP_06745131.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1] gi|300860530|ref|ZP_07106617.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD Ef11] gi|255963402|gb|EET95878.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968359|gb|EET98981.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598976|gb|EEU18152.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684155|gb|EEU23850.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256711948|gb|EEU26986.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256949784|gb|EEU66416.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256987384|gb|EEU74686.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256990236|gb|EEU77538.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256999068|gb|EEU85588.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257164061|gb|EEU94021.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294453118|gb|EFG21533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1] gi|295113239|emb|CBL31876.1| RNA methyltransferase, RsmE family [Enterococcus sp. 7L76] gi|300849569|gb|EFK77319.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD Ef11] gi|323481110|gb|ADX80549.1| RNA methyltransferase family protein [Enterococcus faecalis 62] gi|327535490|gb|AEA94324.1| RsmE family RNA methyltransferase [Enterococcus faecalis OG1RF] Length = 250 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K K + + YH++ V+RM D L L++I + + Sbjct: 1 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + ++ + + +V K ++L++++QK E+G V+ + Sbjct: 61 YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ AAEQ P + + ++ +D ++ A E + Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + +L GPEGG+ +E E LGPRILR++TA + + Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239 Query: 235 ALVQA 239 + V Sbjct: 240 SAVSY 244 >gi|115350589|ref|YP_772428.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria AMMD] gi|115280577|gb|ABI86094.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia ambifaria AMMD] Length = 255 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L R FV+ L + + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AALPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 66 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 S---IPFASLPDAPPAAAVTLLIGPEGGLSPDEENVARAHGF-TALSLGPRVLRTET 239 >gi|160872460|ref|ZP_02062592.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121259|gb|EDP46597.1| conserved hypothetical protein [Rickettsiella grylli] Length = 241 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 119/246 (48%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKS 64 L R++ L S + H+L VLR++ GD ++FNG+ GE+ + I + + Sbjct: 2 RLTRIYQAHALNTGQIISLSQEAAHHLIRVLRLQVGDECIIFNGQAGEFQATIIERIKTT 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 R K+ E+ + ++ + + + + ++++DY++QK+VE+G+ + P++T ++ Sbjct: 62 ARVKLGEFNAINRESPLQITLVQAILHSDKMDYLLQKAVELGVTHVIPLLTAHSTLKLTP 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + A EQ +P + P T + + +I+ Sbjct: 122 DRWEKRYVHWQGVMRGACEQSGRTRIPILENPMTFDVAMMALKAETRIILQPAAKKM--- 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 LH++ V + IGPEGG+ E ++ + F + +GPR+LRS+TA V AM+L+ Sbjct: 179 ---LHSLPFCQRVVLCIGPEGGWSLNELDSAQKMGF-QAMKMGPRVLRSETAGVVAMSLL 234 Query: 238 QAICGD 243 Q + GD Sbjct: 235 QGLYGD 240 >gi|264680843|ref|YP_003280753.1| hypothetical protein CtCNB1_4711 [Comamonas testosteroni CNB-2] gi|262211359|gb|ACY35457.1| hypothetical conserved protein [Comamonas testosteroni CNB-2] Length = 246 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 16/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60 + R PL I + + VLR + GD I LF G+ GE+ + I++ Sbjct: 1 MPRYHCPIPLHIGNELDLPAGAARH-VQVLRHQPGDVITLFEGQTGNGFTGGEFQATITH 59 Query: 61 VGKS-IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 +G+S + +V+ S ++ + + V + R+D++++K+ E+G+ +I+PV+ + Sbjct: 60 MGRSDVGVRVDSHSPAEREAARAVHLVVGMPANERMDWLVEKATELGVASIQPVMAARSV 119 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 ++R ++ +SA EQC +P I+ P L L++ D Sbjct: 120 LKLKGDRADKKIERWQSIAVSACEQCGRNQVPVIHAPLPLADWLRSKDAPATDATRLVLS 179 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E + A V +L GPEGG ++E++ + P SLG R+LR++TA+VA Sbjct: 180 LREGNQPLRTAAGDAQAVWVLHGPEGGLTAQEEDLALEQGW-KPASLGSRVLRAETASVA 238 Query: 233 AMALV 237 A++L+ Sbjct: 239 ALSLL 243 >gi|227552631|ref|ZP_03982680.1| protein of hypothetical function DUF558 [Enterococcus faecium TX1330] gi|257888142|ref|ZP_05667795.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257896967|ref|ZP_05676620.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|293378677|ref|ZP_06624836.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1] gi|227178257|gb|EEI59229.1| protein of hypothetical function DUF558 [Enterococcus faecium TX1330] gi|257824196|gb|EEV51128.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257833532|gb|EEV59953.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|292642717|gb|EFF60868.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1] Length = 254 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K G+ YH++ V+RM+ D + L +++I+ + + Sbjct: 1 MQRYFLKESYEPKDHFILKGETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 + +++ + + S + K +LD++IQKS E+G A V+ + Sbjct: 61 YLKEIKKEENQKELPSSITIASGYPKGEKLDWVIQKSTELGAQAFIGFPASASVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 R+ AAEQ +P + T L + D ++ A E + Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEK 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + GPEGG EE + + LGPRILR++TA + + Sbjct: 181 SNVAKILSETKPGSRILAVFGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYQW 246 >gi|300925058|ref|ZP_07140976.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1] gi|300418804|gb|EFK02115.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1] Length = 210 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLD 95 M G + LF+G + + ++I+ K + KV E Q + + + +++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQLDDRESPLHIHLGQVMSRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKS+E+G+ I P+ + + + + + + I+A EQC +P I P Sbjct: 61 FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPA 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 121 MDLEAWCAEQDEGLKLNLHPRASNSINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|227888501|ref|ZP_04006306.1| protein of hypothetical function DUF558 [Escherichia coli 83972] gi|300900237|ref|ZP_07118421.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1] gi|300928111|ref|ZP_07143656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1] gi|300954208|ref|ZP_07166673.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1] gi|300980098|ref|ZP_07174841.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1] gi|301049259|ref|ZP_07196232.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1] gi|301643701|ref|ZP_07243740.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1] gi|227834770|gb|EEJ45236.1| protein of hypothetical function DUF558 [Escherichia coli 83972] gi|300298955|gb|EFJ55340.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1] gi|300318792|gb|EFJ68576.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1] gi|300356253|gb|EFJ72123.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1] gi|300409355|gb|EFJ92893.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1] gi|300463877|gb|EFK27370.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1] gi|301077903|gb|EFK92709.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1] gi|315289506|gb|EFU48901.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 110-3] gi|315293940|gb|EFU53292.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 153-1] gi|324011803|gb|EGB81022.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 60-1] Length = 210 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLD 95 M G + LF+G + + ++I+ K + KV E Q + + + +++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKS+E+G+ I P+ + + + + + + I+A EQC +P I P Sbjct: 61 FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPA 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 121 MDLEAWCAEQDEGLKLNLHPRASNSINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|221640498|ref|YP_002526760.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides KD131] gi|221161279|gb|ACM02259.1| Hypothetical Protein RSKD131_2399 [Rhodobacter sphaeroides KD131] Length = 224 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 14/223 (6%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 +R+ G + LFNG+DGEW ++++ GK Q+ D+ +F+PIK R Sbjct: 1 MRLARGAAVSLFNGRDGEWRAEVAETGKRGGTLLCTDQTAPLRLPPDLWLLFAPIKKART 60 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 D++++K+ EMG I PV TR+T + DR++ + + AAEQC +P + +LE Sbjct: 61 DFIVEKAAEMGAARILPVQTRFTNSERIRQDRLQAHAVEAAEQCGGTFVPEVADLASLER 120 Query: 155 LLKNWDHNCQIVFADETCGSENS-------------LEKLHAIAHIPNVAILIGPEGGYH 201 LL +W +I++ DE+ + E+ AILIGPEGG+ Sbjct: 121 LLADWPAERRIMWCDESLVGARAGLLEAAGGFEARGFEEGPKRPSPGPWAILIGPEGGFS 180 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE+ L + V P+SLGPRILR+DTAAVAA+ L Q++ GDW Sbjct: 181 EEEQARLRRMEQVVPVSLGPRILRADTAAVAALTLWQSVLGDW 223 >gi|29376497|ref|NP_815651.1| hypothetical protein EF1975 [Enterococcus faecalis V583] gi|227519317|ref|ZP_03949366.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX0104] gi|256964753|ref|ZP_05568924.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257419655|ref|ZP_05596649.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|29343961|gb|AAO81721.1| conserved hypothetical protein TIGR00046 [Enterococcus faecalis V583] gi|227073246|gb|EEI11209.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX0104] gi|256955249|gb|EEU71881.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257161483|gb|EEU91443.1| conserved hypothetical protein [Enterococcus faecalis T11] Length = 250 Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K K + + YH++ V+RM D L L++I + + Sbjct: 1 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + ++ + + +V K ++L++++QK E+G V+ + Sbjct: 61 YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ AAEQ P + + ++ +D ++ A E + Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + +L GPEGG+ +E E LGPRILR++TA + + Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239 Query: 235 ALVQA 239 ++V Sbjct: 240 SVVSY 244 >gi|221213199|ref|ZP_03586174.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD1] gi|221166651|gb|EED99122.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD1] Length = 255 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 SALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + L + D +++ + Sbjct: 127 GERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDSLPPAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 S---IPFASLPDAPPAAPVTLLIGPEGGLSPDEEAAARARGF-TALSLGPRVLRTET 239 >gi|89891576|ref|ZP_01203080.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89516123|gb|EAS18786.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 234 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 8/235 (3%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++ LF + L T ++ ++ VLR GD I + +G+ + I+++ Sbjct: 1 MQ-LFYNSQLDTHSTSFTLDREESKHVFKVLRKNIGDIINITDGRGNLYHGTINHITSNR 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + T + +P K +R+++ ++K+ EMG+ I P+++++++ N Sbjct: 60 CDLDIAFAEAYPTHDYYLHIAIAPTKMNDRMEWFLEKATEMGISRITPILSQHSERQKIN 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +DR +SA +Q P + T E + + + + + E G +N L+ L Sbjct: 120 LDRFNRIIVSAMKQSLQFHKPELDALTNFEDFINAKNVSDKFIAHCED-GDKNHLKNL-- 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I + +LIGPEG + +E E F P+SLG LR++TA V A + Sbjct: 177 IHKGNSTTVLIGPEGDFTPQEIEMALKNDF-KPVSLGSTRLRTETAGVYTAATLN 230 >gi|323490055|ref|ZP_08095276.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis MPA1U2] gi|323396351|gb|EGA89176.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis MPA1U2] Length = 245 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 106/246 (43%), Gaps = 13/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ + +GD ++A V+R GDN++ ++ + ++I + Sbjct: 1 MQRYFIEGKVPDNRIVAITGDDAKHIAKVMRQTVGDNLIAVI-EEQAYDAEILSTDFDVE 59 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K+ V K ++LD + QK+ E+GM A+ P + Sbjct: 60 IKIGNKIETLVELPKKVTIACGLPKGDKLDLITQKATELGMYALLPFSAERSIVKWDNAK 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-- 177 + + R++ AAEQ +P ++ + + L+ + ++ A E + Sbjct: 120 SDKKIGRLQKIAKEAAEQSHRTHIPEVHNIHSFKQLISKAEAYDVVIVAYEEEARQGDRT 179 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + ++ +V ++ GPEGG E + L + + SLGPRILR++TA + A++ Sbjct: 180 RFAEIIKSLYDKDSVLLVFGPEGGISDAEVQALKNFGAIFT-SLGPRILRTETAPLYALS 238 Query: 236 LVQAIC 241 + Sbjct: 239 AISYEF 244 >gi|86130519|ref|ZP_01049119.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85819194|gb|EAQ40353.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 233 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 9/231 (3%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++ LF L I+ T D+ ++ VLR + GD I L NG + +++ Sbjct: 1 MQ-LFYSKSLDIESTSYTLPKDESKHVIRVLRKQPGDTIYLTNGNGYLFTAQVYDANPNK 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + + + + +P K +R ++ ++K+ E+G+ I P++ +++ Sbjct: 60 CKLSITSHTYQEPRDYKLHLAVAPTKLNDRFEWFLEKATEIGVTEITPLLCDHSERKVIK 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R SA +Q LP + P T + + N N I ++ S Sbjct: 120 EERFLKILQSAMKQSLHYHLPKLNPLTPFKDFITNAHSNTFIAHCEDDTKS----LLKSE 175 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ++ + ILIGPEG + + E + +TP+SLG LR++TAA+ A Sbjct: 176 LSPATDCTILIGPEGDFSTTEIQQALQKN-ITPVSLGHSRLRTETAAIVAC 225 >gi|53802677|ref|YP_112559.1| hypothetical protein MCA0018 [Methylococcus capsulatus str. Bath] gi|53756438|gb|AAU90729.1| conserved hypothetical protein TIGR00046 [Methylococcus capsulatus str. Bath] Length = 243 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 15/246 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + RL++ PL G++ HYL VLR+K G ++ +FNG+ GE+ ++I + Sbjct: 2 RISRLYLPVPLASGADVVLDGERAHYLRTVLRLKRGFDLTVFNGEGGEFAARIGVCHREA 61 Query: 66 RFKVEYQSRSQTKQSD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 R ++S V+ + R+D IQK+VE+G+GAI P+ T Sbjct: 62 VSLTVGAHRPDDRESRLDVRLGLGISRGERMDLAIQKAVELGVGAITPLFTERCVVQLDG 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++ R +A EQ +P + P +LE L +I Sbjct: 122 ERKAQRLEHWRRVVWAACEQSGRNRVPEVLEPRSLEAWLPEA-AGLRICLDPHAVHGLRE 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +V +L GPEGG+ E++ + FV P+ LGPR+LR++TAA+AA+A + Sbjct: 181 LA-----PPVGSVTLLSGPEGGFSDAERDMAVAAAFV-PIRLGPRVLRTETAALAALAAI 234 Query: 238 QAICGD 243 Q + GD Sbjct: 235 QTLWGD 240 >gi|305666561|ref|YP_003862848.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170] gi|88708830|gb|EAR01065.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170] Length = 235 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 6/236 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + +Q S ++ +++ VLR KE D +L+ NGK + +KI K Sbjct: 1 MQLFYNPRLDNSASQFVFSPEESNHIIKVLRKKEDDILLITNGKGYMFEAKIILANAKKC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + ++ ++ K + +P K +R ++ ++K+ E+G+ I P+I ++ Sbjct: 61 KAQITSTTKKHRKMYWFHLVVAPTKSNDRFEWFLEKATEIGVDEITPIICDNSERKIIKP 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R+ SA +Q LP + P + + + N + C E LE + Sbjct: 121 ERMEKVLQSAMKQSLQAYLPKLNPAVSYKEFMGNSREGLLFIAH---CDEEEKLELKRRV 177 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A +V +LIGPEG + +E E+ + ++ P+SLG LR++TAA+ A V I Sbjct: 178 APDKDVTVLIGPEGDFSRKEIESAYENGYL-PVSLGRNRLRTETAAIVACTTVNLI 232 >gi|146296762|ref|YP_001180533.1| hypothetical protein Csac_1755 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410338|gb|ABP67342.1| protein of unknown function DUF558 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 242 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + F++ + + D +++ VLR +EG+ + L +G ++ +KI + K Sbjct: 1 MPIFFIESKNIVNDIAYITDKDDLNHVVKVLRKREGEVLNLCDGI-YDYKAKILEISKDK 59 Query: 65 IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E + +Q Q DV IK ++D +IQK+ E+G+ + PVI++ ++ Sbjct: 60 IKVAIEEKVLNQREPQKDVFLFQCIIKNQKMDIIIQKATELGVKVLIPVISKRVVIDISE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + A +QC P I P + + D ++ E EN Sbjct: 120 KEEKKIQRWQRIAKEAQKQCLRPYSPQIQRPIEIGRVKDFLDELDLLIIPYE---KENKK 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L ++I V ILIGPEGG+ +E E L V +SLG RILRS+TAA++ +++V Sbjct: 177 TYLDINSNINRVGILIGPEGGFEEDEIEIFKDLQKVRIVSLGKRILRSETAAISVISIVM 236 Query: 239 AICG 242 + G Sbjct: 237 HLLG 240 >gi|110832950|ref|YP_691810.1| hypothetical protein ABO_0090 [Alcanivorax borkumensis SK2] gi|110646061|emb|CAL15537.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 240 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 14/243 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R F D + + H++ VLRM D +++FNG+ GEWL++IS + K Sbjct: 3 RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAINKKAVC 62 Query: 68 KVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + + + + + IK R+DY IQK+ E+G A+ + T + Sbjct: 63 IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQC + +P ++ +L L + +++ E S Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHP----GEKSFS 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A+ +A+L GPEGG+ ++E + F +P +LG R+LR++TA VA +A + A Sbjct: 179 A-AALQGQTELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALWA 236 Query: 240 ICG 242 G Sbjct: 237 WHG 239 >gi|161525920|ref|YP_001580932.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans ATCC 17616] gi|189349361|ref|YP_001944989.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans ATCC 17616] gi|160343349|gb|ABX16435.1| protein of unknown function DUF558 [Burkholderia multivorans ATCC 17616] gi|189333383|dbj|BAG42453.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 254 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 17/236 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 SALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK----NWDHNCQIVFADETC 172 + + R ++ EQC +P + L D +++ + Sbjct: 127 GERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLPPPADGELRLLLSPRAS 186 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 ---IPFASLPDAPPAAPVTLLIGPEGGLSPDEEAAARARGF-TALSLGPRVLRTET 238 >gi|257087179|ref|ZP_05581540.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256995209|gb|EEU82511.1| conserved hypothetical protein [Enterococcus faecalis D6] Length = 250 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K K + + YH++ V+RM D L L++I + + Sbjct: 1 MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + ++ + + +V K ++L++++QK E+G V+ + Sbjct: 61 YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ AAEQ P + + ++ +D ++ A E + Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEK 180 Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +L + + +L GPEGG+ +E E LGPRILR++TA + + Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239 Query: 235 ALVQA 239 + V Sbjct: 240 SAVSY 244 >gi|10945822|gb|AAG24651.1| unknown [Alcanivorax borkumensis] Length = 240 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 14/243 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R F D + + H++ VLRM D +++FNG+ GEWL++IS + K Sbjct: 3 RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAISKKAVC 62 Query: 68 KVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + + + + + IK R+DY IQK+ E+G A+ + T + Sbjct: 63 IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ISA EQC + +P ++ +L L + +++ E S Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHP----GEKSFS 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A+ +A+L GPEGG+ ++E + F +P +LG R+LR++TA VA +A + A Sbjct: 179 A-AALQGQTELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALWA 236 Query: 240 ICG 242 G Sbjct: 237 WHG 239 >gi|300815584|ref|ZP_07095808.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1] gi|300906490|ref|ZP_07124185.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1] gi|300401733|gb|EFJ85271.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1] gi|300531513|gb|EFK52575.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1] gi|324017218|gb|EGB86437.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 117-3] Length = 210 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95 M G + LF+G + + ++I+ K + + ++S + + + +++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKS+E+G+ I P+ + + + + + + I+A EQC +P I P Sbjct: 61 FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPA 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 121 MDLEAWCAEQDEGLKLNLHPRASNSINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|238026201|ref|YP_002910432.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia glumae BGR1] gi|237875395|gb|ACR27728.1| Hypothetical protein bglu_1g05320 [Burkholderia glumae BGR1] Length = 253 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 17/236 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S + R FVD PL ++ + + VLR++ GD + LF+G G++ +++ +GK Sbjct: 6 SAIPRFFVDRPLQADSEVMLPAEVARH-VQVLRLEPGDPLTLFDGTGGQYRAELVELGKR 64 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 V + +R V +++D++I+K+VE+G+ A+ P+ T Sbjct: 65 NAVARTVGFDARELETPYRVTLAQGIAGGDKMDWLIEKAVELGVTALAPLSTARGVVRLS 124 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETC 172 + + + +A EQC +P + P L L D +++ + Sbjct: 125 GERADKRVAHWQGVVRAACEQCGRNRVPAVAPIAELSAWLDALPPAADAELRLMLSPRAS 184 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L A A V +LIGPEGG E++ F + LG R+LR++T Sbjct: 185 ---IAFAALPATAPAGTVTLLIGPEGGLSPAEEDAARKHGFQAIV-LGARVLRTET 236 >gi|268609141|ref|ZP_06142868.1| hypothetical protein RflaF_06546 [Ruminococcus flavefaciens FD-1] Length = 240 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 14/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F + + +G +++ LRMK+G+ I + ++ I+ + Sbjct: 1 MPRFFTNE--INEDNIVLTGSDANHIGRSLRMKKGEEITVC-CNGIDYNCTIASITADSV 57 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + VE + +V + K ++L+Y+IQKSVE+G+ I PV+TR + Sbjct: 58 YLDLVEKHPCAAEPDINVTLFQAVPKLDKLEYIIQKSVELGVSRIVPVLTRRCISRPDEK 117 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R+ AA+Q +P + P + + L + + + E G + Sbjct: 118 DFAKKLPRLNKIAAEAAKQSGRGMIPEVTPVVSFKQSLAMMEELDRNILLYEEQGGRSFG 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E + + I+IG EGG+ EE E + + V + LG RILR +TA + A++++ Sbjct: 178 EV--DFEGVKSAGIIIGSEGGFDQEEAEAMVNSGAVR-VWLGKRILRCETAPITALSILM 234 Query: 239 AIC 241 + Sbjct: 235 FLT 237 >gi|253574632|ref|ZP_04851972.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845678|gb|EES73686.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 267 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 15/250 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD + +G+ ++ V+R K GD +++ +G E L++I+ + Sbjct: 14 MQRYFVDPAQFGDREVTIAGEDARHIGRVMRSKPGDKLIVSDGISREVLAEITIIEPQQV 73 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 +E + S V S K ++++ +IQK E+G + P ++ ++ Sbjct: 74 TAAIIEELAASGEPWFQVTVAQSLPKGDKMETVIQKCTEIGAASFLPFLSERTIVQYDSK 133 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + AAEQ +P + P + LL + + E Sbjct: 134 KEEKRLTRWQKIAKEAAEQAHRSKIPAVELPVKWDKLLVELKNYDLVCLCYEKEDGRQLR 193 Query: 179 EKLHAI------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + L VA+++GPEGG+ + + LG RILR++TAA+A Sbjct: 194 DVLKPFVTGLTPERTVKVAVVVGPEGGFTEA-EVEEAEAAGAVSVGLGRRILRTETAAMA 252 Query: 233 AMALVQAICG 242 A+ + G Sbjct: 253 ALTCIMYESG 262 >gi|58002818|gb|AAW61712.1| Hypothetical protein GOX1976 [Gluconobacter oxydans 621H] Length = 254 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 16/250 (6%) Query: 2 KIHSHL----KRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW 54 + + RL+V Q HYL +V+R G + +FN +DGEW Sbjct: 9 RYRKRMNRSDPRLYVPASETAFVEGQTIPLPSGQAHYLGNVMRQGVGSAVRVFNERDGEW 68 Query: 55 LSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113 ++I+ + K + R+ V+ +F+P+K + + +I+ E+G+ RPV+ Sbjct: 69 AAEIASLKKDKGSVLLHRCERTPAPTDGVELLFAPLKRDATELVIRMGTELGVTRFRPVV 128 Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 T T N++R+ AAEQC+ L +P I PP +L +L W + + A E Sbjct: 129 TERTNTHRLNLERLSLIATEAAEQCERLDIPEILPPESLRVVLAGWPDDRPLFAALERRP 188 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E+ A + A+LIGPEGG+ E E L V LSLGP +LR++TA A Sbjct: 189 GED--------AGVQAAALLIGPEGGFSEAEVELLRRHAAVHALSLGPLVLRAETAVCAG 240 Query: 234 MALVQAICGD 243 ++ + A D Sbjct: 241 LSRLAARAED 250 >gi|257899573|ref|ZP_05679226.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257837485|gb|EEV62559.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 254 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K G+ YH++ V+RM+ D + L +++I+ + + Sbjct: 1 MQRYFLKESYEPKDHFILKGETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 + +++ + + S + K +LD++IQKS E+G A V+ + Sbjct: 61 YLKEIKKEENQKELPSSITIASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 R+ AAEQ +P + T L + D ++ A E + Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKRDLFERLDDYDMVLVAYEESAKQGEK 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + GPEGG EE + + LGPRILR++TA + + Sbjct: 181 SNVAKILSETKPGSRILAVFGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYQW 246 >gi|188521803|gb|ACD59748.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 227 Score = 230 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 14/230 (6%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVE-YQSRSQTKQS 80 + ++L VLR+++GD +LFNG ++ ++I+ GK R VE + S Sbjct: 2 ALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRDARALVERVEPLSNESPL 61 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISA 134 + + + ++D ++QK+ E+G+ AI PVI T+ T + R+ +SA Sbjct: 62 RITLMQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDAARTEKRVAHWRSVVVSA 121 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 EQ LP + P L+ + D H ++ + +L A + ++ + Sbjct: 122 CEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLGTL----ASSIPQHIVVA 177 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ ++ TL F + L LGPRILR++TA +AA+A +Q+ GD Sbjct: 178 IGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAALQSRFGD 226 >gi|254180624|ref|ZP_04887222.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655] gi|184211163|gb|EDU08206.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655] Length = 255 Score = 230 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIALVRGFDAWLDALPATPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A +V +LIGPEGG +E++ + F LSLGPR+LR++T Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239 >gi|169832194|ref|YP_001718176.1| hypothetical protein Daud_2054 [Candidatus Desulforudis audaxviator MP104C] gi|169639038|gb|ACA60544.1| protein of unknown function DUF558 [Candidatus Desulforudis audaxviator MP104C] Length = 249 Score = 230 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 10/247 (4%) Query: 6 HLKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+FV + +GD +L VLR+ G +LL +G + ++I V + Sbjct: 2 RIPRVFVPPGRWRGREEAWITGDDARHLTRVLRLAAGSELLLLDGSGRAYAAEIREVDRD 61 Query: 65 IRFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 V ++ S K +R++ ++QK+ E+G+ AI PVI+ T Sbjct: 62 GVRAVITGPAELPADPGLRVTLVPSLAKGDRMEDLVQKATEVGVAAIVPVISERTVVRLT 121 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + ++R R AAEQC +P ++ E LK F E Sbjct: 122 PEKAGRRVERWRRIATEAAEQCRRPLVPDVHGVCRFEDALKRLPAGGAAFFLWEEERGTG 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + A + V + GPEGG+ EE + V+ +SLGPR+LR+DTA V A+AL Sbjct: 182 LKQALRSRAPVREVFLFTGPEGGFTPEEAAAATARGAVS-VSLGPRLLRTDTAGVVAVAL 240 Query: 237 VQAICGD 243 V GD Sbjct: 241 VLYEWGD 247 >gi|293556305|ref|ZP_06674890.1| protein YqeU [Enterococcus faecium E1039] gi|291601564|gb|EFF31831.1| protein YqeU [Enterococcus faecium E1039] Length = 254 Score = 230 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K G+ YH++ V+RM+ D + L +++I+ + + Sbjct: 1 MQRYFLKESYESKDHFVLEGENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 + +++ + + S + K +LD+++QKS E+G A V+ + Sbjct: 61 YLKEIKKEENQKELPSSITIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 R+ AAEQ +P + T + L + D ++ A E + Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEK 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+ + L + + GPEGG +E + + LGPRILR++TA + + Sbjct: 181 SNAAKILSETKPDSRILAVFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYQW 246 >gi|330686119|gb|EGG97740.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU121] Length = 250 Score = 230 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKS 64 ++R F++ + + + H++ +V+R EG I++ + KI + + Sbjct: 1 MQRYFINQNADESQRFFITNKEDIHHIKNVMRHSEGQLIVITFNDQNVYTCKIIHLADQE 60 Query: 65 IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + +E Q + IK ++ ++MIQK+ E+G V + + Sbjct: 61 VEVELIEKQDIDTELPQHITICSGLIKADKYEWMIQKATELGASGFIAVEMQRSIVKLNH 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ LT+P I + + + + ++ A E Sbjct: 121 TKVSKKLERWQKIIKEAAEQSYRLTIPHISYLSNSKSICDIINQYDYVLVAYEEEAKHGE 180 Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + L V ++ GPEGG EE L S + LGPRILR++TA + Sbjct: 181 ISHFKHMLKQFKPQDRVLLIFGPEGGLSDEEVSMLKSHS--QLVGLGPRILRAETAPLYT 238 Query: 234 MALVQAI 240 + + Sbjct: 239 LGALSYE 245 >gi|254246356|ref|ZP_04939677.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184] gi|124871132|gb|EAY62848.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184] Length = 267 Score = 230 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + + R FVD L D + VLR++ GD + LF+G G++ +++ V K Sbjct: 20 AAVPRFFVDAALRADAPLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 78 Query: 64 SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 S +V+ + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 79 SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 138 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + L D +++ + Sbjct: 139 GERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLSPRA 198 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 199 S---SPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 251 >gi|149372812|ref|ZP_01891833.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49] gi|149354509|gb|EDM43074.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49] Length = 236 Score = 230 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 6/234 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 + L T+ D+ ++ VLR KEGD + + NG+ + ++I KS Sbjct: 4 FYQQGILPTATEIVFDKDESRHIHKVLRKKEGDQLHITNGEGYLFTTEILSSNPKSCIAT 63 Query: 69 VEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V S Q + +P K +R ++ ++K+ E+G+ I P+I +++ +R Sbjct: 64 VTETSLEQPLPYQLHMAVAPTKLNDRFEWFLEKATEIGITEITPIICDHSERKVIKKERY 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAH 186 +SA +Q LP + T +K + D N + + E ++ +L+ + I Sbjct: 124 EKIIVSAMKQSLSCYLPKLNDAITFTAFMKLSHDENFKSIAHCENEPTKKALK--NCIKP 181 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +LIGPEG + +E + F T +SLG R LR++TAA+ A + Sbjct: 182 NFDSLLLIGPEGDFSKKEIKQAKDKDF-TEVSLGDRRLRTETAAIVACHTFSVL 234 >gi|289550652|ref|YP_003471556.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus lugdunensis HKU09-01] gi|289180184|gb|ADC87429.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus lugdunensis HKU09-01] Length = 250 Score = 230 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 21/250 (8%) Query: 7 LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F++ + + H++ +V+R GD+I++ + +I+ + Sbjct: 1 MQRYFINENADDGQRFFIRDKNDRHHIINVMRNCVGDHIIITFQNQSVFECEITDINDEY 60 Query: 66 -----RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVIT 114 + K++ + V IK ++ ++M+QK+ E+G V+ Sbjct: 61 IQIMPKVKLDIHT---ELPLYVTICSGLIKADKYEWMLQKATELGANEFWAVDMARSVVK 117 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +DR + AAEQ LT+P + + L+ + H I+ A E Sbjct: 118 LNQTKAMKKIDRWQKIVKEAAEQSYRLTIPSVKYMSNLKSVYDKISHYDYILIAYEEQAK 177 Query: 175 ENS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +N + L V ++ GPEGG E E + LGPRILR++TA Sbjct: 178 QNERSHFRQLLQCFKPNDRVLMIFGPEGGLTESEIEMFKDNS--HTVGLGPRILRAETAP 235 Query: 231 VAAMALVQAI 240 + A++ + Sbjct: 236 LYALSAMSYE 245 >gi|260062552|ref|YP_003195632.1| 16S ribosomal RNA methyltransferase RsmE [Robiginitalea biformata HTCC2501] gi|88784119|gb|EAR15289.1| hypothetical protein RB2501_13214 [Robiginitalea biformata HTCC2501] Length = 235 Score = 230 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 6/236 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + + Q + ++ ++ VLR K GD + + NGK ++++I + Sbjct: 1 MNYFYHPLLDTSVNQFSFTPEESRHIVKVLRKKAGDQLHITNGKGYLFVAEILEANPERC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+ + K + +P K +R ++ ++K+ E+G+ I PVI + ++ M Sbjct: 61 MGKLLETRKFHPKMYSLHVAVAPTKKTDRFEWFLEKATEIGIDRITPVICQRSERRKLPM 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R++ A +Q LP + P L L+ + + C + ++ + Sbjct: 121 ERMQRVVQEAMKQSLRTYLPELEEPVALREFLEREQPVLKFIAH---CEEDEKMDLKRRV 177 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A +V ILIGPEG + +E + F+ P+SLG LR++TAA+ A V I Sbjct: 178 AADKDVIILIGPEGDFTHDEIQMACEKGFI-PVSLGEYRLRTETAALVACTTVNLI 232 >gi|292571762|gb|ADE29677.1| hypothetical protein rpr22_CDS160 [Rickettsia prowazekii Rp22] Length = 236 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 139/241 (57%), Gaps = 8/241 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + + D HY+ VLR+K D++ +FNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQ 56 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK+ + ++ Q + +S + + IK+++L I + ++G+ I P+ITR Q Sbjct: 57 IGKNNLSVVLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + L P I TL+ LK +N I++A+E ++S+ Sbjct: 117 RTVNIERLMKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEHEKVKHSIL 174 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + ++ ++AI+IGPEGG+ ++E E L +SLG ILR++TAA++ ++ V+ Sbjct: 175 HISSLLS-KDIAIIIGPEGGFTNDELELLALYNNTQSISLGSNILRTETAAISLISQVRL 233 Query: 240 I 240 + Sbjct: 234 L 234 >gi|229260084|ref|YP_001118455.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia vietnamiensis G4] Length = 255 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD ++LF+G G++ +++ + K Sbjct: 8 AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 NALAQLDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPEVAAVRGFGAWLDALPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 S---IPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 239 >gi|229597239|ref|YP_001763902.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia MC0-3] Length = 255 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + + R FVD L D + VLR++ GD + LF+G G++ +++ V K Sbjct: 8 AAVPRFFVDAALRADAPLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 66 Query: 64 SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 S +V+ + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 187 S---SPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 239 >gi|126663640|ref|ZP_01734636.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38] gi|126624223|gb|EAZ94915.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38] Length = 234 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 10/235 (4%) Query: 7 LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++ LF + + ++ ++ VLR KEGD I + NG + S+I K Sbjct: 1 MQ-LFYNSEIKQGDSTYFFDKEESKHIVKVLRKKEGDTIFITNGLGFLFESEIILASEKK 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 K+ ++ + +P K +RL++ ++K+ E+G+ I P+I +++ Y Sbjct: 60 CEVKIAKETFQEPVAFYTHIAVAPTKMNDRLEWFLEKATEIGIDEITPIICDHSERKVYK 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLH 182 +DR +A +Q LP I PT+L +K N++ I +ET + Sbjct: 120 IDRAEKIIQAAMKQSLHYYLPKINEPTSLSQFVKLNFEGQKFIAHCEETDKK----SFKN 175 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I H + ILIGPEG + ++E + F+ P++LG LR++TAA+ A + Sbjct: 176 EIKHNEKITILIGPEGDFSTKEINLAIANQFI-PVTLGNTRLRTETAALVACHTI 229 >gi|169815197|gb|ACA89780.1| protein of unknown function DUF558 [Burkholderia cenocepacia MC0-3] Length = 262 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + + R FVD L D + VLR++ GD + LF+G G++ +++ V K Sbjct: 15 AAVPRFFVDAALRADAPLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 73 Query: 64 SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 S +V+ + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + L D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 S---SPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 246 >gi|160915014|ref|ZP_02077227.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991] gi|158432813|gb|EDP11102.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991] Length = 266 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 11/244 (4%) Query: 1 MKIHSH---LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57 M +++ F I + +Q H+++HVLRM+E D + + + ++ + + Sbjct: 10 MMYDYRGDFMQQYFYSKRAQINDYIVLNDEQAHHVSHVLRMRENDVVRIVDKENTMFFAH 69 Query: 58 ISYVGKSIRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 + + GK + ++ + T+ + + IK + DY++QKS E+G+ I P + Sbjct: 70 LLFEGKKVIAHLDQKIEDHTRNAVRITLLQGMIKKEKWDYVLQKSAELGVDCIVPFTSSR 129 Query: 117 T------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE 170 T + + R + A EQC TL + P L+ + I + D Sbjct: 130 TVVKAKEERMDKKLLRWNKILLEACEQCKRSTLVDLKEPCLLKDAARYKSELNIIAYEDA 189 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 SE L I +V I IG EGG+ EE L + + +SLG RILR++TAA Sbjct: 190 DATSEKLHRLLAKYPKISSVTIAIGSEGGFSKEEVSMLMEMGY-HRVSLGARILRAETAA 248 Query: 231 VAAM 234 +AA+ Sbjct: 249 LAAI 252 >gi|56750741|ref|YP_171442.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus PCC 6301] gi|81299617|ref|YP_399825.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus PCC 7942] gi|56685700|dbj|BAD78922.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168498|gb|ABB56838.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 243 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 6/240 (2%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + L+RL++ + + DQ HYL VLR+K GD + +G+ G W +++ Sbjct: 1 MARELRRLWLPPEQLQGDRWSLTADQRHYLQRVLRLKPGDRCAVIDGQGGLWTAELG--D 58 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120 + F V Q + I S K D +I+++ E+G+ I+PVI+ +Q Sbjct: 59 RDQLFPVGAVPVLPPAQPRLTLIQSLPKQG-FDEVIRQATELGVTTIQPVISDRSQVRPE 117 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 DR R I A+EQ + L LP + P + + N L Sbjct: 118 AQKTDRWRKIAIEASEQSERLYLPQLEPIRLWSEAIAQIPADSLRCICLARRSLPNLLPW 177 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A ++AI IGPEGG+ E E ++ + TP+SLG ILR+ TA + A++L QA+ Sbjct: 178 LQAQPAWTDLAIAIGPEGGWSDAEIEQAIAVGW-TPVSLGSSILRAVTAPIVALSLAQAV 236 >gi|221202461|ref|ZP_03575492.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2M] gi|221208082|ref|ZP_03581087.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2] gi|221171985|gb|EEE04427.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2] gi|221177634|gb|EEE10050.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans CGD2M] Length = 255 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171 + + R ++ EQC +P + L D +++ + Sbjct: 127 GERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLAPAPVDGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG EE+ + F T LSLGPR+LR++T Sbjct: 187 S---IPFASLPDAPPAAPVTLLIGPEGGLSPEEEAAARARGF-TALSLGPRVLRTET 239 >gi|134137877|gb|ABO53620.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia vietnamiensis G4] Length = 262 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FV+ L D + A VLR++ GD ++LF+G G++ +++ + K Sbjct: 15 AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQLVEIDKR 73 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 74 NALAQLDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 133 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + L D +++ + Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPEVAAVRGFGAWLDALPAAPADGELRLLLSPRA 193 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + F T LSLGPR+LR++T Sbjct: 194 S---IPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246 >gi|324994345|gb|EGC26259.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK678] Length = 250 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+K GD ++L + L+++ + Sbjct: 1 MQQYFIKGNPQSPLEVT-DKDTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNT 120 VE + + V K ++L+++ QK+ E+G AI V + Sbjct: 60 EIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADRSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 +++ AAEQ +P I L +I+ A E E Sbjct: 120 AKKSEKLEKIAQGAAEQSKRNLIPEIRLFDKKADFLAALADFDRIIVAYEESAKEGETAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + V + GPEGG +E V+ LGPRILR++TA + A+ Sbjct: 180 LVRALSGLEAGAKVLFIFGPEGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALTA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSVLL 243 >gi|229557995|ref|YP_192368.2| 16S ribosomal RNA methyltransferase RsmE [Gluconobacter oxydans 621H] Length = 250 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 12/246 (4%) Query: 2 KIHSHLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 +++ RL+V Q HYL +V+R G + +FN +DGEW ++I Sbjct: 9 RMNRSDPRLYVPASETAFVEGQTIPLPSGQAHYLGNVMRQGVGSAVRVFNERDGEWAAEI 68 Query: 59 SYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + K + R+ V+ +F+P+K + + +I+ E+G+ RPV+T T Sbjct: 69 ASLKKDKGSVLLHRCERTPAPTDGVELLFAPLKRDATELVIRMGTELGVTRFRPVVTERT 128 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 N++R+ AAEQC+ L +P I PP +L +L W + + A E E+ Sbjct: 129 NTHRLNLERLSLIATEAAEQCERLDIPEILPPESLRVVLAGWPDDRPLFAALERRPGED- 187 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + A+LIGPEGG+ E E L V LSLGP +LR++TA A ++ + Sbjct: 188 -------AGVQAAALLIGPEGGFSEAEVELLRRHAAVHALSLGPLVLRAETAVCAGLSRL 240 Query: 238 QAICGD 243 A D Sbjct: 241 AARAED 246 >gi|309775549|ref|ZP_07670549.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 3_1_53] gi|308916643|gb|EFP62383.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium 3_1_53] Length = 254 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + +Q H++ V+RM++GD I + + L+++ + ++ Sbjct: 8 MQQYFVNTLAQPGETIAMTSEQAHHIRRVMRMQQGDVIRVADNSGQIMLAEVEFQKDGVQ 67 Query: 67 FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + + +K S ++ IK + DY++QKS E+G I P ++ Sbjct: 68 AHILKELCDHSKTSVELVLAQGMIKGEKWDYLLQKSAELGAAEIIPFVSSRCVVKIKDDK 127 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG-SENSL 178 T R A EQC TL + P LK + +++ ++ SE Sbjct: 128 TEKKTARWNKILCEACEQCKRSTLVQLKEPCAFSD-LKEIPADLRLIAYEDADQCSERLC 186 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L A I V +++G EGG+ +EE L S F +SLG RILR++TAA++ + Sbjct: 187 DVLRAHPSIRRVLMVVGSEGGFSAEEVAELVSCGF-HRVSLGGRILRAETAALSLL 241 >gi|291519248|emb|CBK74469.1| RNA methyltransferase, RsmE family [Butyrivibrio fibrisolvens 16/4] Length = 243 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65 ++++FV+ I + +G H+L V+R++ G+ I + ++ ++S + K + Sbjct: 1 MQQVFVNE-QPIDGKFNITGQDAHHLTKVVRLRPGEKIRVSVSDGSNYICEVSDYIEKDL 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V + S + + + K +R++ +I+K VE+G I PV + + Sbjct: 60 VATVVEEVPSTELPNKIYLFQAIPKGDRMETIIEKCVELGAYEIIPVEMKNCIVKLDDKK 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSL 178 ++R ++ SAAEQ +P I+ + + + I+ E+ G +++ Sbjct: 120 KKSKVERYQSIAKSAAEQSKRSIIPGIHSVMSFKEAFEYAKALDVILLPFESKNGMKDTY 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L + ++ + IGPEGG+ E E + V +SLG RILR+DTAA+ +++++ Sbjct: 180 DCLAGLKKGQSIGVFIGPEGGFAPNEIEMVEDS--VQLISLGHRILRTDTAAICSLSMLM 237 Query: 239 AICGDW 244 C ++ Sbjct: 238 LKCEEF 243 >gi|293571365|ref|ZP_06682396.1| protein YqeU [Enterococcus faecium E980] gi|291608581|gb|EFF37872.1| protein YqeU [Enterococcus faecium E980] Length = 254 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K G+ YH++ V+RM+ D + L +++I+ + + Sbjct: 1 MQRYFLKESYEPKDNFILKGETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 + +++ + + S + K +LD++IQKS E+G A V+ + Sbjct: 61 YLKEIKKEENQKELPSSITIASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 R+ AAEQ +P + T L + D ++ A E + Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEK 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L + + GPEGG EE + LGPRILR++TA + + Sbjct: 181 SNVAKILSETKPGSRILAVFGPEGGLSHEEINYFVEHKGIL-CGLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYQW 246 >gi|300310746|ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1] gi|300073531|gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R + L I + H++ HVLR++ GD I LFNG+ GE+ + +S V K Sbjct: 1 MPRFHLPQALGIGSDLVLPEQIAHHI-HVLRLQPGDAITLFNGEGGEYTATLSAVEKKRA 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R + + + ++D++++K+VE+G A++P+ + + Sbjct: 60 HAQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +AAEQC LP + T + + D + +I+ + L Sbjct: 120 RAEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPR---GAEPL 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 V +++GPEGG+ EE+E + LS+G R+LR++T Sbjct: 177 SGWARHHPPQAVTLVVGPEGGFSDEEEELACAQG-ALMLSMGSRVLRTET 225 >gi|154251112|ref|YP_001411936.1| hypothetical protein Plav_0656 [Parvibaculum lavamentivorans DS-1] gi|154155062|gb|ABS62279.1| protein of unknown function DUF558 [Parvibaculum lavamentivorans DS-1] Length = 264 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 8/225 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 RL+++ PL + DQ HYL +VLRM EG +LLFNG+DGEW ++I+ K+ Sbjct: 21 RLYIEEPLNAGARLTLERDQSHYLVNVLRMGEGAAVLLFNGRDGEWAARIAEAHKKNCVL 80 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ Q+R Q D+ +F+P+K RLD++ QK+ EMG I+PVIT T T +R+ Sbjct: 81 ELTAQTRVQEPLPDIWLLFAPVKKARLDFIAQKATEMGAAVIQPVITERTVVTRLKDERL 140 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLHAI 184 + + AAEQC ++ +P + L LL W+ +I+F DE+ + E L + Sbjct: 141 QANAVEAAEQCGLVAVPEVREAEKLGSLLARWEEAAPGRRILFCDESEEPGAAREALARL 200 Query: 185 A----HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 A +AILIGPEGG+ +E++ L LSLGPRI+R Sbjct: 201 AEEGWRGAPLAILIGPEGGFSPKERDMLRGRKDTAVLSLGPRIMR 245 >gi|302391394|ref|YP_003827214.1| hypothetical protein Acear_0607 [Acetohalobium arabaticum DSM 5501] gi|302203471|gb|ADL12149.1| protein of unknown function DUF558 [Acetohalobium arabaticum DSM 5501] Length = 248 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 9/245 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV+ + Q + +GD ++ LR+ GD I + +GK ++ +I+ G + Sbjct: 1 MHHFFVEPDYITEGQVRITGDDVKHITKSLRLGPGDEISVADGKGRRYMVEIAETGNGLV 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 + + +V + K+ ++D +++K E+G+ + P T+ + Sbjct: 61 LGNIKEEFRSKVEPEVEVTLLQGLPKSRKMDLIVEKCTELGIDKVIPAETKRSVVKLKPS 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + +AA+Q +P + L L + I+ E + + Sbjct: 121 KAKRRRKRWQRKAEAAAKQSKRARIPAVGQLMNLTDLSEIATDYDLILLPWEEESTSSVK 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E L + A I V I+IGPEGG+ +EE ET L +SLGPRILR++TA + ++LV Sbjct: 181 EVLGSAAAIEKVLIIIGPEGGFTAEEVETAKQLG-AKSVSLGPRILRTETAGLTTLSLVL 239 Query: 239 AICGD 243 GD Sbjct: 240 YELGD 244 >gi|81428349|ref|YP_395349.1| hypothetical protein LSA0735 [Lactobacillus sakei subsp. sakei 23K] gi|78609991|emb|CAI55039.1| Hypothetical protein LCA_0735 [Lactobacillus sakei subsp. sakei 23K] Length = 251 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 108/247 (43%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---K 63 ++R F++ + + + +G+ H++ V+RM+ GD I + ++ +++++ K Sbjct: 1 MQRYFIEETVTVGQSLQLTGETAHHMLKVMRMQVGDQIEIVTPEELAFITQLQSADATQK 60 Query: 64 SIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 VE + + K ++ D+++QK ++G ++++ Sbjct: 61 QATVTVESAVETDVELPIETTIVCGLSKGDKTDWIVQKGTQLGAHRFIFCNSQFSVARWD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + + R++ AAEQ +P I +L + + + + + E+ Sbjct: 121 AKKQVKKLARLQKIAQEAAEQAHRTHVPVIEWRASLTAIAEESADIKLVAYEESAKAGEH 180 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ++ L + ++ + GPEGG +E E L + F+ LGPRILR++TA + + Sbjct: 181 GQLVQSLQSAQPGQSLICVFGPEGGIAPKEIEALQAAGFLLA-GLGPRILRAETAPLYLL 239 Query: 235 ALVQAIC 241 + + + Sbjct: 240 SAISYVT 246 >gi|289434752|ref|YP_003464624.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170996|emb|CBH27538.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 255 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++R F+D + + + + +G+ +H++ V+RMKEGD + + + ++KI + + Sbjct: 1 MQRYFIDKTIENELEPIRITGENFHHMTRVMRMKEGDQVFIVFPSNQTAIAKIISIAAEE 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + V+ T+ + K ++L+Y+IQKS E+G P + Sbjct: 61 VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPYKAERSVVKWEE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR++ AAEQ +P ++ +L+ LL IV A E E Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNKQFDYIVVAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V ++ GPEGG +E L L V LGPRILR++TA + Sbjct: 181 DRMLASLFKETVPNQSVLVIFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFFF-DLY 250 >gi|325693858|gb|EGD35777.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK150] Length = 250 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPSQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK E+G AI V + Sbjct: 59 LEILEELADNTELPVQVIIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P I L +I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKEGEST 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L +A V + GPEGG +E V+ LGPRILR++TA + A+ Sbjct: 179 VLVRALSGLAAGAKVLFIFGPEGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|326791224|ref|YP_004309045.1| ribosomal RNA small subunit methyltransferase E [Clostridium lentocellum DSM 5427] gi|326541988|gb|ADZ83847.1| Ribosomal RNA small subunit methyltransferase E [Clostridium lentocellum DSM 5427] Length = 246 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV+ + + G +++ +VLR+ G IL+ N + ++ I + + Sbjct: 1 MAKFFVNSEDVFENEIHIKGTDVNHIKNVLRLPVGKEILINNRQGKDYKCIIKLIDTDLV 60 Query: 67 FKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 +T + VQ S IK +++++IQK++E+G+ I P+IT Sbjct: 61 TADIIGELEETTEPAVQTVLFQSLIKGEKMEFVIQKAIEIGVTVIIPIITERCIVKLESD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + T +R + SAA+Q +P + P T + L ++ Sbjct: 121 KKTKSKCERWQKIAESAAKQSKRGIVPEVLWPMTFKEALTYAKQQLEVSCIPFENEHAYH 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ ++ I IGPEGG+ EE + ++P++LG RILRS+TA + +A + Sbjct: 181 IKTYLKNCKAKSIGIFIGPEGGFTDEEVLLASTFQ-ISPITLGKRILRSETAGLVTLANI 239 Query: 238 QAICG 242 G Sbjct: 240 MYEMG 244 >gi|320355424|ref|YP_004196763.1| hypothetical protein Despr_3346 [Desulfobulbus propionicus DSM 2032] gi|320123926|gb|ADW19472.1| protein of unknown function DUF558 [Desulfobulbus propionicus DSM 2032] Length = 260 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 10/241 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + SG + ++A VLR+K G + LF+G+ + + VGK Sbjct: 1 MRRFFFPHHAHSGDLIELSGAEARHIASVLRLKPGQAVELFDGQGQVCAAVLQTVGKHQV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN---TH 121 R++ V + +K ++D ++QK+ E+G A PV++ Y +N Sbjct: 61 TARVTAIRNERPAVSVPLTLAQCLLKGKKMDLLVQKATELGAQAFMPVVSAYCENHGDRD 120 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + +R + I A +QC I P L+ ++ + A E G + Sbjct: 121 HQRERWQRIMIEACKQCHRSNPMAILPVARLDQ--ADFTPYDHRLAAWE--GERQAALPT 176 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 I H + + +GPEGG H ++ L F TP SLG ILR +TAA+AA+++VQ + Sbjct: 177 RFIDHPGPLCLFLGPEGGLHDDDLRLLTQWSF-TPFSLGRHILRGETAALAALSIVQYLS 235 Query: 242 G 242 G Sbjct: 236 G 236 >gi|86748970|ref|YP_485466.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas palustris HaA2] gi|86571998|gb|ABD06555.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 251 Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 3/230 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RLF+D L + + DQ +YL +VLR+ G +L FNG+DGEW + ++ Sbjct: 3 RYEFRSPRLFLDAALVAGARVPLNRDQSNYLGNVLRLSSGAPVLAFNGRDGEWRAVLAGR 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + +V Q+R Q + D+ Y F+P+K RLDYM QK+VEMG G ++PV+TR+TQ Sbjct: 63 KRPEELEVAEQTRPQDRLPDLTYAFAPLKHARLDYMAQKAVEMGAGRLQPVLTRHTQVHR 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEK 180 N +R+R I AAEQC IL+L + P LE L+ + +VF DE + + Sbjct: 123 LNTERMRANVIEAAEQCGILSLAGVEEPVALERWLETRAESGRLLVFCDEDAEVADPVAA 182 Query: 181 LHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + +L+GPEGG+ ++E++ L P + L+LGPRI+R+DT Sbjct: 183 LQGARPAAAQGIDLLVGPEGGFAADERDVLLRQPNILRLALGPRIMRADT 232 >gi|157825352|ref|YP_001493072.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia akari str. Hartford] gi|157799310|gb|ABV74564.1| hypothetical protein A1C_01170 [Rickettsia akari str. Hartford] Length = 254 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 137/245 (55%), Gaps = 11/245 (4%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + R++++ L ++ + + D HY+ VLR+K D + +FNG +GE+L+ I+ Sbjct: 1 MRFN----RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRIFNGTEGEFLAHITA 56 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK +I +++ Q + +S + + IK ++L I + ++G+ I P+IT Q Sbjct: 57 IGKHNISVRLKEQLKKPYTESALTLAVAIIKQDKLMLAINMATQLGITKIIPLITSRCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + L P I T++ LK HN +++A+E ENS+ Sbjct: 117 RTVNIERLTKCVIEATEQSERLIPPIIEKAITIQDCLK--KHNNFMLYANEHEKEENSIL 174 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++ ++ N+AI+IGPEGG+ ++E E L S +SLG ILR++TA + A +VQ Sbjct: 175 RISSLLD-NNIAIIIGPEGGFTNDELELLASYKNTKSVSLGSNILRAETAVITA--IVQV 231 Query: 240 -ICGD 243 + G Sbjct: 232 KLLGR 236 >gi|259046670|ref|ZP_05737071.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036835|gb|EEW38090.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC 49175] Length = 249 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV + T + S +Q H L V+RMK + + + + ++ + Sbjct: 1 MQRYFVKGIVSETTHSLEFSKEQIHQLKKVMRMKVEEQFEVVDENSTLAIVELVCLEPFE 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119 ++ ++ K ++LD+++QK+ E+G+ I P V+ Sbjct: 61 VRVIKTLNQKVELPVFTAIAVGLSKGDKLDWIVQKATELGVNEIIPIEMSRNVVKWNKDK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE---- 175 +R++ A+EQ L LPF+ T++ L++ Q + A E E Sbjct: 121 ASKKTERLQKIAEEASEQSHRLKLPFVSEVMTIDSLIEYTKTYHQKLIAYEEAAKEGERV 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ L A+ + + GPEGG +E L F T SLGPRILR++TA + A++ Sbjct: 181 QLVKSLQALKEGEKIVFVFGPEGGIDEKEVAKLQMNEFHT-CSLGPRILRAETAPLYALS 239 Query: 236 LVQAIC 241 + C Sbjct: 240 ALSYQC 245 >gi|69247931|ref|ZP_00604547.1| Conserved hypothetical protein 46 [Enterococcus faecium DO] gi|257880295|ref|ZP_05659948.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257882150|ref|ZP_05661803.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257890954|ref|ZP_05670607.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894209|ref|ZP_05673862.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258614757|ref|ZP_05712527.1| hypothetical protein EfaeD_03512 [Enterococcus faecium DO] gi|260562402|ref|ZP_05832916.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261209224|ref|ZP_05923616.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566140|ref|ZP_06446575.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293560713|ref|ZP_06677192.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|293566148|ref|ZP_06678551.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|294614194|ref|ZP_06694114.1| protein YqeU [Enterococcus faecium E1636] gi|294618772|ref|ZP_06698299.1| protein YqeU [Enterococcus faecium E1679] gi|294622231|ref|ZP_06701291.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|314938567|ref|ZP_07845851.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04] gi|314940912|ref|ZP_07847818.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C] gi|314948067|ref|ZP_07851469.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082] gi|314952049|ref|ZP_07855072.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A] gi|314991930|ref|ZP_07857385.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B] gi|314995188|ref|ZP_07860302.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01] gi|68194633|gb|EAN09120.1| Conserved hypothetical protein 46 [Enterococcus faecium DO] gi|257814523|gb|EEV43281.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257817808|gb|EEV45136.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257827314|gb|EEV53940.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257830588|gb|EEV57195.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260073326|gb|EEW61667.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260076770|gb|EEW64505.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162085|gb|EFD09950.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291590074|gb|EFF21866.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|291592970|gb|EFF24559.1| protein YqeU [Enterococcus faecium E1636] gi|291594960|gb|EFF26310.1| protein YqeU [Enterococcus faecium E1679] gi|291598273|gb|EFF29366.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291605304|gb|EFF34759.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313590597|gb|EFR69442.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01] gi|313593514|gb|EFR72359.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B] gi|313595839|gb|EFR74684.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A] gi|313600270|gb|EFR79113.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C] gi|313642124|gb|EFS06704.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04] gi|313645483|gb|EFS10063.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082] Length = 254 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K G+ YH++ V+RM+ D + L +++I+ + + Sbjct: 1 MQRYFLKESYESKDYFVLEGENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 + +++ + + S + K +LD+++QKS E+G A V+ + Sbjct: 61 YLKEIKKEENQKELPSSITIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 R+ AAEQ +P + T + L + D ++ A E + Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEK 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+ + L + + GPEGG +E + + LGPRILR++TA + + Sbjct: 181 SNAAKILSETKPDSRILAVFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYQW 246 >gi|114763454|ref|ZP_01442861.1| hypothetical protein 1100011001336_R2601_17754 [Pelagibaca bermudensis HTCC2601] gi|114543992|gb|EAU47003.1| hypothetical protein R2601_17754 [Roseovarius sp. HTCC2601] Length = 208 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 4/210 (1%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 +RM G ILLFNG DGEW ++I+ GK + Q+R+Q D+ +F+PIK R Sbjct: 1 MRMATGGEILLFNGHDGEWRAEITEAGKKAGTAVCDTQTRAQAMPPDLWLLFAPIKKART 60 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 D++++K+VE+G+ I PV T++T + DR++ + + AAEQC L +P + L+ Sbjct: 61 DFIVEKAVELGVRRILPVQTQFTNSERIRQDRLQAHALEAAEQCGALFVPEVAELVRLDR 120 Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 LL +W ++F DE + A A A+LIGPEGG+ E+ L + Sbjct: 121 LLADWPDERGLLFCDEAEAGSRAGALASAPAPS---AVLIGPEGGFSDAERTRLGRMEQT 177 Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++LGPRILR+DTAAVAA+ L Q+ GDW Sbjct: 178 RVIALGPRILRADTAAVAALTLWQSQSGDW 207 >gi|21672668|ref|NP_660735.1| hypothetical protein BUsg395 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009589|sp|Q8K9E4|RSME_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|21623305|gb|AAM67946.1| hypothetical 26.9 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 246 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + + R+++ + L I S HY+ VLRMK+ D + +FN + + S+I + Sbjct: 1 MKKRIPRIYIKYFLQINQVISLSKSYTHYIKKVLRMKKKDKLEIFNNTNYIFFSEILEIN 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + + + + +S + + K ++++ IQKSVE+G+ I P+ + Y Sbjct: 61 NHTIEIIILKKQIKNLESPLLIHLGQVISKNEKMNFSIQKSVELGVNTITPLFSEYCNFQ 120 Query: 121 H------YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCG 173 + IS+ EQC +P I P + K +++ +IVF+ Sbjct: 121 NKLICFPKKKIHWENIVISSCEQCHRNNIPEIKNPEYILPWCKRTYENETKIVFSPSATF 180 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + N L + I V +LIG EGG+ E E + F+ P+ LGPRILR++TA +AA Sbjct: 181 TINELPE-----KINCVRLLIGSEGGFSFLEIEKIIQYGFI-PIKLGPRILRTETAVIAA 234 Query: 234 MALVQAICGD 243 + +Q GD Sbjct: 235 ITALQIKFGD 244 >gi|146302321|ref|YP_001196912.1| hypothetical protein Fjoh_4594 [Flavobacterium johnsoniae UW101] gi|146156739|gb|ABQ07593.1| protein of unknown function DUF558 [Flavobacterium johnsoniae UW101] Length = 235 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 108/231 (46%), Gaps = 8/231 (3%) Query: 7 LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 ++ LF + + T+ ++ ++ VLR K+ D + + NG+ + ++I+ Sbjct: 1 MQ-LFYNPDIDETTESFSFDKEESKHIIKVLRKKDSDILHVTNGQGLLFETEITLASDNK 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 V +S + + +P K +R ++ ++K+ E+G+ I P+I ++ N Sbjct: 60 CIVSVLSIKKSPEPKFRLHLAVAPTKMNDRFEWFLEKATEIGIQEITPIICDRSERKVIN 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R +SA +Q + + LP + + + +K + Q + E ++ E L + Sbjct: 120 LERFEKIVLSAMKQSNEMFLPKLNDAVSFKEFIKQKNQGLQFIAHCEETDKKSLKESLKS 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 NV +LIGPEG + +E + P++LG LR++TAAV A Sbjct: 180 ---NENVTLLIGPEGDFSEKEIALALENNY-KPVTLGNTRLRTETAAVVAC 226 >gi|319789344|ref|YP_004150977.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1] gi|317113846|gb|ADU96336.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1] Length = 239 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 18/246 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R VD + G + + VLR+K+GD I++F+G+ E+ + I S+ Sbjct: 1 MRRFKVDS--IKGSVAYLRGQEARHALKVLRLKKGDEIIVFDGEGKEYSAVIEAASPTSV 58 Query: 66 RFK-VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + K VE + ++ + K + + +QK E+G+ I PV+ + Sbjct: 59 KLKIVEEINVNRDSPLNSTLYMGLTNKLQKFELALQKVTELGVTRIVPVVCARSSTAQLV 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +N M R + ++AA+QC LP + P L + D + + V ++ S + Sbjct: 119 KNWSGKMRRWQEIVVNAAKQCGRSVLPELLEPVPLPEVED--DSDLKFVLWEKGGKSLKN 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + A +V++L+GPEGG E E L S F P+ LG RILR++TAA+A + LV Sbjct: 177 YQDYVA----SSVSLLVGPEGGLEKGEIELLESKGF-KPIYLGKRILRAETAAIAGVTLV 231 Query: 238 QAICGD 243 Q I GD Sbjct: 232 QFIWGD 237 >gi|227872816|ref|ZP_03991130.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268] gi|227841343|gb|EEJ51659.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268] Length = 254 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 120/249 (48%), Gaps = 15/249 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + FV + + G+ +H+L VLR + G+ IL+ +G+ ++ +I S+ + Sbjct: 1 MHHFFVSKEEIGEEKILLRGENFHHLHKVLRGQIGEKILISDGEGVDYQCEIQSFSEEEA 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 + ++ + + + + K ++++++IQK+VE+G+ A+ P+ ++ T Sbjct: 61 VLSICFREEPHELPAKIILLQALPKGDKMEWIIQKAVELGISALIPLESKNTVMKLKEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178 + R ++ SAA+Q LP + + D + +++ + G + Sbjct: 121 EEKKISRWQSIMDSAAKQSKRSILPKMENGMGWKEAFSYVKDCDFKLLPYENERGVIPTR 180 Query: 179 EKLHAI------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E L + ++A+ IGPEGG+ EE E F+ P+SLG RILR++TAA+ Sbjct: 181 EILAKMEAAVKGKKNCSIALCIGPEGGFTKEEVEQAMGEGFL-PISLGKRILRTETAAIT 239 Query: 233 AMALVQAIC 241 A++L+ Sbjct: 240 ALSLIMMQL 248 >gi|291543373|emb|CBL16482.1| RNA methyltransferase, RsmE family [Ruminococcus sp. 18P13] Length = 239 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 15/244 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F+ Q +G+ H++ LRM+ G+ + + G ++ +I + G + Sbjct: 1 MPRFFLPA--LDPVQPVITGEDAHHIGFSLRMRPGEQLTVCAG-GVDYDCRIREITGDCV 57 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 +V+ Q+ + + + + KT++L+ ++QK+VE+G I PV+TR + Sbjct: 58 YLEVQGQAPCAAEPTVALTLYQALPKTDKLEQIVQKAVELGAARIVPVLTRRCISRPDPG 117 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R++ +AA+Q +P + T L+ V E G S+ Sbjct: 118 QFSKKQQRLQKIAHAAAKQAGRGIIPEVGGMLTFSQALEELGGQQLPVMLYEAGGV--SM 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +L + ++ +L+G EGG+ EE + P+ LGPRILR +TA + A++L+ Sbjct: 176 SQL-TVPRTGSIGVLVGSEGGFDPEEAAQARLAG-IQPVWLGPRILRCETAPLTALSLLM 233 Query: 239 AICG 242 + G Sbjct: 234 YLSG 237 >gi|261313181|ref|ZP_05952378.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302207|gb|EEY05704.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 204 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 125/205 (60%), Gaps = 2/205 (0%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++RL+V+ L A HYL HVLRMKEGD +L+FNG+DGEW + + G K + Sbjct: 1 MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q+R Q K S++ Y F+P+K RLDYM+QK+VEMG G ++PVIT++TQ + Sbjct: 61 LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+R I AAEQC +L+LP + L WD + +++F DE S++ L L + Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHS 210 P+ +LIGPEGG+ EE++ LH Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHR 204 >gi|121534804|ref|ZP_01666624.1| protein of unknown function DUF558 [Thermosinus carboxydivorans Nor1] gi|121306599|gb|EAX47521.1| protein of unknown function DUF558 [Thermosinus carboxydivorans Nor1] Length = 244 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 17/231 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++R F PL ++ +GD H++A VLR+K GD I++ ++I V G S+ Sbjct: 1 MRRFFFPGPLA--SEMIITGDDGHHIARVLRLKPGDYIIVAGQDGQACKAEIISVDGSSV 58 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + + + S +V K +++D++IQK+VE+G+ I P+ T YT Sbjct: 59 KVACRQALTESNEPPVEVWLAQGLPKGDKMDFIIQKAVELGVTRILPIETAYTVVRYDAG 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD--ETCGSEN 176 +R + AA+QC +P + T LLK I+ + CG + Sbjct: 119 KKAARRERWQKIAYEAAKQCGRAAVPEVASVQTFSSLLKMTLPETVIMLYEGQPACGLKQ 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 +L + + +LIGPEGG+ +E +++GPRILR++ Sbjct: 179 ALR----MTPSESYLLLIGPEGGFSPDEVLLCRQRG-AQIVTMGPRILRTE 224 >gi|326335942|ref|ZP_08202119.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691906|gb|EGD33868.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 268 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 101/235 (42%), Gaps = 6/235 (2%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++ + + ++ ++ VLR K GD + + +G+ + I + K Sbjct: 25 EMQLFYHENLSPESNLILLDKEESTHIHRVLRRKIGDLLYITDGRGNLYEGVIQDINDKK 84 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 ++ + + + +P K R ++ ++K+ E+G+ I P+I +++ Sbjct: 85 CSIVIQSCTLTPPLPYQLHLAVAPTKMNERYEWFLEKATEIGVHEITPIICEHSERKTVK 144 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLH 182 ++R +SA +Q P + P + L N H A G + L +KL Sbjct: 145 IERFEKIILSAMKQSLQCFRPILNKPINMLNWLDNNIHEKNRFIAHCQEGKKELLFDKLS 204 Query: 183 A--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +I ++ I+IGPEG + +E + F +P+ L LR++TAA+ A + Sbjct: 205 TSYHNNIRDILIIIGPEGDFSEKEIQKAIQKNF-SPVILSSNRLRTETAAIVACS 258 >gi|297617813|ref|YP_003702972.1| hypothetical protein Slip_1648 [Syntrophothermus lipocalidus DSM 12680] gi|297145650|gb|ADI02407.1| protein of unknown function DUF558 [Syntrophothermus lipocalidus DSM 12680] Length = 253 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 L R FV GD+ +L+ VLR+ GD +L+ +G E L ++ K I Sbjct: 4 LHRFFVAHERIKDGYVIIEGDEAKHLSKVLRLGPGDEVLVCDGSGKELLVRLETAEKGLI 63 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + +V Q+ + + V + K ++D+++QK+VE+G+ I PV+T + Sbjct: 64 KGRVVNQNHPEREPGLTVGLVQGVGKGEKMDFIVQKAVELGISRIYPVMTDRGTVRLDGE 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 + + R A +QC +P I T L ++ + F + + Sbjct: 124 RAFHRVQRWEKIAKEACKQCGRTVVPEIKGITDLTVVMDECRDIPGLFFYEGEWKRPLKT 183 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + I V + IG EGG+ E ET + LGPRILR++TAA+AA+ Sbjct: 184 ILRENARILRDRGVILYIGAEGGFSLREAETARKRG-ILMAGLGPRILRTETAALAAITA 242 Query: 237 VQAICGD 243 V GD Sbjct: 243 VMYELGD 249 >gi|312864025|ref|ZP_07724261.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis F0396] gi|322517605|ref|ZP_08070473.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] gi|311100438|gb|EFQ58645.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis F0396] gi|322123770|gb|EFX95348.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 247 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ D ++ +V+R+ E D ++L ++L++++ + Sbjct: 1 MQQYFIKG-QMENPVIIKDKDTVKHMFNVMRLAEDDQVVLVFEDGIKYLARVTDRENHVL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+ + QK+ E+G AI V+ + Sbjct: 60 EVIEVLNENVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWGFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P + L D+ +I A E L Sbjct: 120 AKKEDKLDKIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELAT 179 Query: 181 LHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + V + LGPRI+R++TA + A++ Sbjct: 180 LARELAHVESGQKILFIFGPEGGISPSEIDAFEEAGGVK-VGLGPRIMRTETAPLYALSS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|315658147|ref|ZP_07911019.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis M23590] gi|315496476|gb|EFU84799.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 253 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 21/251 (8%) Query: 6 HLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L+R F++ + + H++ +V+R GD+I++ + +I+ + Sbjct: 3 KLQRYFINENADDGQRFFIRDKNDRHHIINVMRNCVGDHIIITFQNQSVFECEITDINDE 62 Query: 65 I-----RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVI 113 + K++ + V IK ++ ++M+QK+ E+G V+ Sbjct: 63 YIQIMPKVKLDIHT---ELPLYVTICSGLIKADKYEWMLQKATELGANEFWAVDMARSVV 119 Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +DR + AAEQ LT+P + + L+ + H I+ A E Sbjct: 120 KLNQTKAMKKIDRWQKIVKEAAEQSYRLTIPSVKYMSNLKAVYDKISHYDYILIAYEEQA 179 Query: 174 SENS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +N + L +V ++ GPEGG E E + LGPRILR++TA Sbjct: 180 KQNERSHFRQLLQCFKPNDHVLMIFGPEGGLTESEIEMFKDNS--HTVGLGPRILRAETA 237 Query: 230 AVAAMALVQAI 240 + A++ + Sbjct: 238 PLYALSAMSYE 248 >gi|148266299|ref|YP_001233005.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter uraniireducens Rf4] gi|146399799|gb|ABQ28432.1| protein of unknown function DUF558 [Geobacter uraniireducens Rf4] Length = 246 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R + + + SGD + ++A VLR+K G +++L +G E I+ VG KS+ Sbjct: 1 MRRFILADSIINDGKVTVSGDLFRHMAKVLRLKAGTSVILADGAGRECTGVITAVGAKSL 60 Query: 66 RFKVEYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +VE + T + K ++L++++QK E+G+ I P + Sbjct: 61 EIRVEEGPAAPTGDNGPRITLYQGMPKGDKLEFIVQKCTELGVAEIVPFTAARSIAKVTH 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q ++R R AA Q T+P + L +L+ H+ +++ +E G+ Sbjct: 121 QRGMERIERWRRIATEAARQSKRRTVPQVTLAENLSEVLQAAQHSVKLLLWEEEQGNR-L 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + ++A+L+GPEGG +EE + F+ PLSLG RI+R++TA + ++++ Sbjct: 180 KETLSGLPIPESIAVLVGPEGGLTAEEAAAASACGFI-PLSLGKRIVRTETAGIIILSIL 238 Query: 238 QAICGD 243 Q GD Sbjct: 239 QFYWGD 244 >gi|326566657|gb|EGE16798.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 12P80B1] Length = 241 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 19/248 (7%) Query: 7 LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL I H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118 KS K++ Y ++T + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120 Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + ++ ++A EQC + +P I P L+ + N ++V A + Sbjct: 121 KYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + KL N+++LIG EGG E + FV P +G R+LR++TA V A++ Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVVALS 233 Query: 236 LVQAICGD 243 + + G Sbjct: 234 AL-TLFGR 240 >gi|239637611|ref|ZP_04678583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus warneri L37603] gi|239596829|gb|EEQ79354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus warneri L37603] Length = 250 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F++ + + + H++ +V+R EG I+ + +I ++G Sbjct: 1 MQRYFINQNADESQRFFITNKEDIHHIKNVMRQCEGQQIVTTFNDQNVYTCEIIHIGDQE 60 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 +E Q + IK ++ ++MIQK+ E+G R ++ + Sbjct: 61 IEIELIEKQDIDTELPQHITICSGLIKADKYEWMIQKATELGASEFIAVEMQRSIVKLNS 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ LT+P I + + + + ++ A E Sbjct: 121 TKASKKLERWQKIIKEAAEQSYRLTIPHISYLSNSKLICDIINQYDCVLVAYEEEAKHGE 180 Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + L V ++ GPEGG EE L P + LGPRILR++TA + Sbjct: 181 ISHFKHMLKQFKPQDRVLLIFGPEGGLSDEEVSMLK--PHSQLVGLGPRILRAETAPLYT 238 Query: 234 MALVQAI 240 + + Sbjct: 239 LGALSYE 245 >gi|269837717|ref|YP_003319945.1| hypothetical protein Sthe_1689 [Sphaerobacter thermophilus DSM 20745] gi|269786980|gb|ACZ39123.1| protein of unknown function DUF558 [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67 R ++ PL + +Q A VLR+ G ++LFNG E I + + Sbjct: 7 RFYLPAPLPPGESVALTEEQARQAARVLRLAPGAPVVLFNGDGQEVPGTIEDCAPRRVTV 66 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ E ++ + + IK +R D+++QK E+G+ I P+ T T + Sbjct: 67 RLGEPRAGRSCPVPAIHVAQALIKADRFDWVVQKVTELGVARITPLATSRTVVSLPVERA 126 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +R + + AAEQ +T+P I P TL+ LL +V + + + Sbjct: 127 RQRRERWQRIAVEAAEQSGRVTIPEIDEPATLDDLLPLMARIPALVCWENEAMPLHRVR- 185 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + ++IGPEGG+ EE T +SLGP ILRS+TAA+AA+A Sbjct: 186 ---LPTAGPLLVVIGPEGGFTREEIAAAVDAGART-VSLGPLILRSETAALAALA 236 >gi|223044376|ref|ZP_03614410.1| protein YqeU [Staphylococcus capitis SK14] gi|222442245|gb|EEE48356.1| protein YqeU [Staphylococcus capitis SK14] Length = 250 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R F++ + + H++ +V+R EGD++++ + +I + + Sbjct: 1 MQRYFINQSADKLQRFFIENKEDIHHIKNVMRYSEGDSVIVTFLDQTVYKCQIKALNDNY 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 + +++ + T+ + IK ++ ++MIQK+ EMG R V+ Sbjct: 61 VELELKDKQNIDTELPQHITICSGLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ LT+P IY + L+ + H ++ A E Sbjct: 121 SKVAKKLERWQKIIKEAAEQSYRLTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGD 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + + V ++ GPEGG +E T + LGPRILR++TA + A Sbjct: 181 LSHFKQIIKQFKTQDRVLMIFGPEGGLSDKEVSLFSENS--TLVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ V Sbjct: 239 LSAVSFE 245 >gi|126700066|ref|YP_001088963.1| hypothetical protein CD2449 [Clostridium difficile 630] gi|254976043|ref|ZP_05272515.1| hypothetical protein CdifQC_12049 [Clostridium difficile QCD-66c26] gi|255093431|ref|ZP_05322909.1| hypothetical protein CdifC_12334 [Clostridium difficile CIP 107932] gi|255101609|ref|ZP_05330586.1| hypothetical protein CdifQCD-6_12419 [Clostridium difficile QCD-63q42] gi|255307478|ref|ZP_05351649.1| hypothetical protein CdifA_12867 [Clostridium difficile ATCC 43255] gi|255315176|ref|ZP_05356759.1| hypothetical protein CdifQCD-7_12527 [Clostridium difficile QCD-76w55] gi|255517845|ref|ZP_05385521.1| hypothetical protein CdifQCD-_12086 [Clostridium difficile QCD-97b34] gi|255650961|ref|ZP_05397863.1| hypothetical protein CdifQCD_12291 [Clostridium difficile QCD-37x79] gi|260684030|ref|YP_003215315.1| hypothetical protein CD196_2295 [Clostridium difficile CD196] gi|260687690|ref|YP_003218824.1| hypothetical protein CDR20291_2342 [Clostridium difficile R20291] gi|115251503|emb|CAJ69336.1| putative methyltransferase [Clostridium difficile] gi|260210193|emb|CBA64400.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213707|emb|CBE05588.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 252 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 12/248 (4%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FV+ G+ +++ VLR K G+ + + + + E++ +I + KS Sbjct: 1 MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKS 60 Query: 65 IR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 I +E ++ + V+ K +++ ++QK E+G+ I V T+ + Sbjct: 61 IVNLEILEKVDINRESELKVRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVD 120 Query: 123 NM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +R AA+Q +P + + + L++ N + E + + Sbjct: 121 DKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYENERTVS 180 Query: 177 SLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L ++I +V I IGPEGG+ EE E + +SLGPRILR++TA+V A Sbjct: 181 IKHALKKCDSNIDSVGIFIGPEGGFSEEEIEQIQKNN-CNVVSLGPRILRTETASVVAST 239 Query: 236 LVQAICGD 243 + D Sbjct: 240 IALYELSD 247 >gi|229822870|ref|ZP_04448940.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271] gi|229787683|gb|EEP23797.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271] Length = 255 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 18/252 (7%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKS 64 ++R F+D L ++ D + V+R + G L G +L+++ V + Sbjct: 1 MQRYFIDQTGLLVQDLVSLKADDSRHFLRVMRSQPGAKAWLVTGDGQCYLAQLEGEVDRL 60 Query: 65 IRFKVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITR 115 +F++ + +V K ++LDY++QK E G +P V+ Sbjct: 61 AQFRLLELQAEADRVELPVEVTIACGLSKNDKLDYIVQKGTECGASHFQPLALSRDVVKW 120 Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++ +DR++ AAEQC L +P + P +L LL + A E + Sbjct: 121 DSKKAGQRLDRLQKIAKEAAEQCHRLRIPQVAQPLSLAQLLAQSADYDACLVAYEEDAKQ 180 Query: 176 NSLEKLHAI------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +L V ++ G EGG EE L F T ++LGPRILR++TA Sbjct: 181 GEHSRLRQACQALKGQAGAKVLVVFGSEGGLAPEEVSQLCEAGFQT-VALGPRILRAETA 239 Query: 230 AVAAMALVQAIC 241 + ++ + Sbjct: 240 PIYFLSALSYAL 251 >gi|307243293|ref|ZP_07525460.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM 17678] gi|306493311|gb|EFM65297.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM 17678] Length = 258 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 19/255 (7%) Query: 7 LKRLFVDF-PLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FV+ L + G+ +++ VLR +GD I + + E+L +I + K+ Sbjct: 1 MDRFFVEPGQLNLGDKTLYIEGEDVKHISKVLRYDQGDEIEVCDSNKHEYLCRIESIDKT 60 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 VE ++ + V K+ +++ ++QK E G+ I V TR + Sbjct: 61 RINLSIVEEIDINRESRVRVSLYQGLPKSTKMEIILQKLTEAGVDEIVLVNTRRSVVNIK 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 DR AA+QC +P + + E L++ N + E S Sbjct: 121 GDKADKKFDRWERIIYEAAKQCKRGLIPKLRGILSFEEALEDMGKNDINICPYEDEKSLG 180 Query: 177 SLEKLHAIAHIP--------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E L V I IGPEGG+ EE + + + +++GPRI R++T Sbjct: 181 IKEALQTDLVKNIIDKKDEVRVGIFIGPEGGFTQEENDMVKEAG-IASVTMGPRIFRTET 239 Query: 229 AAVAAMALVQAICGD 243 A++ A A+ GD Sbjct: 240 ASIVATAITLYELGD 254 >gi|289209554|ref|YP_003461620.1| hypothetical protein TK90_2394 [Thioalkalivibrio sp. K90mix] gi|288945185|gb|ADC72884.1| protein of unknown function DUF558 [Thioalkalivibrio sp. K90mix] Length = 255 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 14/252 (5%) Query: 1 MKIHSHLKRLFV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 M+ RL + D L AS D+ HY +VLR+K +F+G+ E+ +++ Sbjct: 1 MRC----PRLLINDTDLAAGQSIPASQDRLHYATNVLRLKNDAACRVFDGQGNEFHARLE 56 Query: 60 YVGK-SIRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 G+ S F + ++ + T ++ + + + +D +QK+VE+G+ IRPV+ + Sbjct: 57 VTGRRSGTFHLGDRAAAPTTPARPIELLQGIARGDHMDLAVQKAVELGISVIRPVLCERS 116 Query: 118 QNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171 ++ +AAEQC LP + PP TL+ L +V ++ Sbjct: 117 RSAAAHRGLDKRQAHWAGIIQAAAEQCGRNELPLLVPPATLDEALDASSPGLDLVADEQG 176 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +L+ V ILIGPEGG EE+ + F +++GPR LR++TAA+ Sbjct: 177 PPLSGALDSFGKGGTSGRVRILIGPEGGLTDEERIQARNAGF-QAVAMGPRTLRTETAAI 235 Query: 232 AAMALVQAICGD 243 + + LVQ GD Sbjct: 236 SLLTLVQWRLGD 247 >gi|228476013|ref|ZP_04060721.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus hominis SK119] gi|228269836|gb|EEK11316.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus hominis SK119] Length = 250 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R F++ + + + H++ +V+R G+ I++ ++S+I+ + + Sbjct: 1 MQRYFINQNADSHQRFFITNEEDIHHIKNVMRNTVGNKIIINFNDKKVFISEITNINSNQ 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + DV IK ++ ++++QKS E+G V + Sbjct: 61 IEVLPINQLDIDTELPVDVTICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +DR + AAEQ L +P + + L+ + ++ ++ A E Sbjct: 121 NKVQKKIDRWQKIVKEAAEQSYRLVIPDVKFQSNLKVIYDTINNYDYVLIAYEDEAKHGE 180 Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + L+ V I+ GPEGG+ +E + + + LGPRILR++TA + A Sbjct: 181 KSRFKNILNNFQTNDRVLIIFGPEGGFSDKEIDLFREVS--LNVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISFE 245 >gi|310815076|ref|YP_003963040.1| hypothetical protein EIO_0578 [Ketogulonicigenium vulgare Y25] gi|308753811|gb|ADO41740.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25] Length = 244 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 3/216 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLFVD PL + DQ +YL +V+R++ G + L NG+DGEW + + K Sbjct: 6 RLFVDHPLGPGQTVPLNADQANYLFNVMRLQPGTVLSLINGRDGEWDASVVSAAKRHGTL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 Q++ D+ F+PIK R D++I+K+ E+G + P+++ +T + +DR+ Sbjct: 66 LASRQTKPLQLPPDLWLAFAPIKKTRTDFIIEKATELGTARMIPILSDHTNSERVRVDRL 125 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + + I A EQC LP + P L L ++ + F DE + S A A Sbjct: 126 QAHVIEAVEQCGGTALPEVADPVALSAFLDHFPAGRTLWFCDEALVGQPS--GFPADATA 183 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 ILIGPEGG+ + E++ L +LPF ++LGPRI Sbjct: 184 GPACILIGPEGGFSARERDRLRTLPFARSIALGPRI 219 >gi|314933750|ref|ZP_07841115.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87] gi|313653900|gb|EFS17657.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87] Length = 250 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R F++ + + H++ +V+R EGD++++ + +I + + Sbjct: 1 MQRYFINQSADKLQRFFIENKEDIHHIKNVMRYSEGDSVIVTFLNQTVYKCQIKALNDNY 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 + +++ + +T+ + IK ++ ++MIQK+ EMG R V+ Sbjct: 61 VELELKDKQNIETELPQHITICSGLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + AAEQ LT+P IY + L+ + H ++ A E Sbjct: 121 SKVAKKLERWQKIIKEAAEQSYRLTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGD 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + + V ++ GPEGG +E T + LGPRILR++TA + A Sbjct: 181 LSHFKQIIKQFKTQDRVLMIFGPEGGLSDKEVSLFSENS--TLVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ V Sbjct: 239 LSAVSFE 245 >gi|241761515|ref|ZP_04759602.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753879|ref|YP_003226772.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373823|gb|EER63356.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553242|gb|ACV76188.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 256 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L RL+V+ L ++ Q HYL V+R K G ++LF+ GEWL ++ G K + Sbjct: 12 LPRLYVEEKLSLEAVITPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + K+ + + D+ + +PIK R+D++ +K+ E+G+ I PVIT+ T N++ Sbjct: 72 QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ + + AAEQC +L + +L+ LL W + + FADET G E +E L Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 AIL+GPEGG+ +E++ ++++ P+SLGPRILR Sbjct: 191 MA--AAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILR 228 >gi|298290358|ref|YP_003692297.1| hypothetical protein Snov_0345 [Starkeya novella DSM 506] gi|296926869|gb|ADH87678.1| protein of unknown function DUF558 [Starkeya novella DSM 506] Length = 260 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 +RL+VD L T + D+ HY+A V+R++ G + LFNG+DGEW + G+ Sbjct: 15 FRAQRLYVDDDLGEGTLVRLDRDRAHYVADVIRLEVGGALHLFNGRDGEWRAVREPAGRR 74 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + E + R Q + +D+ Y+F+P+K RLDYM+QK+VEMG G + PV+TR TQ + N Sbjct: 75 EAVLRCEARLRRQAEPADLDYVFAPLKHARLDYMVQKAVEMGAGRLVPVMTRRTQASRVN 134 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R+R I AAEQC IL+LP + P+ L L + ++VF DE + L +L Sbjct: 135 TERMRANVIEAAEQCGILSLPAVLEPSALARWLADLAPERRLVFCDEAAPEADPLAELRE 194 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 P +A+LIGPEGG+ EE+ L + P LSLGPRILR Sbjct: 195 AVAGP-LAVLIGPEGGFDEEERRLLKARPGTIVLSLGPRILR 235 >gi|163857938|ref|YP_001632236.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella petrii DSM 12804] gi|163261666|emb|CAP43968.1| conserved hypothetical protein [Bordetella petrii] Length = 243 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 10/228 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F D PL + H+ VLR++ G I+LFNG GE+ + + GK Sbjct: 3 LPRFFCDTPLSPGVRLPLPTALAHHAVRVLRLRAGAAIVLFNGGGGEYPATLEIEGKDAW 62 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ ++ R + + +++D++++K+VE+G + P+ + + Sbjct: 63 ARLGDFDPRDAELAGRIVLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGAR 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + +A+EQC L + P TL L +++ E + + Sbjct: 123 LEKRVAHWARIAQAASEQCGRNRLMAVDAPATLRDWLDQPADGLRLLCHPEA--GQGLAD 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 L A + +++L+GPEGG+ E V + GPR+LR++ Sbjct: 181 ALAAQPGLRQLSLLVGPEGGWSDAELALAAERG-VQAVRYGPRVLRTE 227 >gi|323137857|ref|ZP_08072932.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242] gi|322396860|gb|EFX99386.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242] Length = 246 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 +RLFV+ L + +YL +VLR++EGD I+LFNG+DGE+ +++ V + S R Sbjct: 9 QRLFVESALAPGADVLPPAEALNYLLNVLRLREGDPIVLFNGRDGEFRAELREVTRRSAR 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V Q R QT ++D+ Y F+P+K RLDYM QK+ EMG G + PV+TR TQ N R Sbjct: 69 LAVGAQLRPQTPRADLDYCFAPLKQARLDYMAQKATEMGAGRLLPVVTRRTQVRRVNTSR 128 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R + AAEQC +L +P + L L + +VF DE N + L A Sbjct: 129 LRANAVEAAEQCGVLAVPEVGEAADLPEFLAGFPAGRLLVFCDEDAPIANPVAAL-AGRE 187 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +++L+GPEGG+ E+E++ LP V LSLGPR+LR Sbjct: 188 GEGISLLVGPEGGFDDVERESIARLPNVVRLSLGPRVLR 226 >gi|224541750|ref|ZP_03682289.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM 15897] gi|224525354|gb|EEF94459.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM 15897] Length = 244 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 9/245 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ A Y ++ V+RM++G++++ + L +I + + + Sbjct: 1 MQRYFIKNNYRQNDIIIADDSMYKHMTKVMRMEKGEHVICIDEDKHVCLCEIIDLKQGLL 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 E + +V ++ K+++ +++IQK+ E+G+ I P+ + Sbjct: 61 QIKEELQENNELDVEVTLVYGLPKSDKFEFVIQKATELGVTRIVPLRASRSIVKMDETRF 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + +R A+EQC +P I PP L L + + +E+ E+ Sbjct: 121 NKKKERFVRIAQEASEQCHRQIVPEITPPIQLSQLKDYLSEVNVVAYEEESKNGEHHAFT 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A ++ I++GPEGG+ +E E + + V P S+G RILRS+TA + ++++ Sbjct: 181 KALDALHTSITIIVGPEGGFDLQEVEKMQVMG-VVPCSIGNRILRSETAPLYMLSVIGYR 239 Query: 241 --CGD 243 GD Sbjct: 240 RELGD 244 >gi|295398031|ref|ZP_06808087.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563] gi|294973789|gb|EFG49560.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563] Length = 254 Score = 227 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 17/254 (6%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64 ++R F++ + + Q + + YH++ +V+RM+ GD ++L + ++ + IS GK Sbjct: 1 MQRYFIEEETVQLNDQIEMDKEAYHHMLNVMRMQIGDQVMLVTQTEQVFIGELISDQGKK 60 Query: 65 IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + VE + + D K ++LD ++QK+ E+G I PV RY+ Sbjct: 61 AVLRLVELREEIKEIPVDTTLFVGLPKGDKLDLIVQKATELGARHIVPVAMRYSVTKWDQ 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR++ AAEQ +P I ++ + Q+ A E Sbjct: 121 KKAGKKIDRLKKIAKEAAEQSHRTFVPTIEDLHSVSMVKNRLGEFDQVCVAYEEVAKSGE 180 Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAVA 232 L ++ +A + GPEGG HS+E L V LGPRILR++TA + Sbjct: 181 AALLAKTYASLKAKDRIAFITGPEGGIHSDEIADFTDGLDHVHLCGLGPRILRTETAPLY 240 Query: 233 AMALVQA---ICGD 243 ++ + + GD Sbjct: 241 LLSSLSFATELLGD 254 >gi|148543950|ref|YP_001271320.1| hypothetical protein Lreu_0719 [Lactobacillus reuteri DSM 20016] gi|184153346|ref|YP_001841687.1| hypothetical protein LAR_0691 [Lactobacillus reuteri JCM 1112] gi|227364863|ref|ZP_03848910.1| protein of hypothetical function DUF558 [Lactobacillus reuteri MM2-3] gi|325682512|ref|ZP_08162029.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530984|gb|ABQ82983.1| protein of unknown function DUF558 [Lactobacillus reuteri DSM 20016] gi|183224690|dbj|BAG25207.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070126|gb|EEI08502.1| protein of hypothetical function DUF558 [Lactobacillus reuteri MM2-3] gi|324978351|gb|EGC15301.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A] Length = 246 Score = 227 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 14/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + + H+L V+R + G + L +L+ +S + Sbjct: 1 MQRYFVNA--TPADEVTLPPEAAHHLLKVMRAEVGTTVELVLADHCVYLATLSATEPTAT 58 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ + + ++ V K + + ++QK+ E+G I + Sbjct: 59 LKINQKLDADSELPVSVTLACGLPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGN 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 ++R++ SAAEQ +P + L+ LL N+ +IV +E+ + Sbjct: 119 KQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLANYPATERIVAWEESAKQGETS 178 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ +A+ ++ + GPEGG E ++ V LGPRILR++TA + MA Sbjct: 179 ALAQQFNALKPGDSILAVFGPEGGLSENEIAKMNEAG-VVAAGLGPRILRTETAPLYFMA 237 Query: 236 LVQA 239 + Sbjct: 238 AISY 241 >gi|324990424|gb|EGC22362.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK353] gi|327459571|gb|EGF05917.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1] gi|327490771|gb|EGF22552.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1058] Length = 250 Score = 227 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 VE + + V K ++L+++ QK+ E+G AI V + Sbjct: 59 LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L +I+ A E E Sbjct: 119 LGKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + V + GPEGG +E + V+ LGPRILR++TA + A+ Sbjct: 179 ALFRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|161506354|ref|YP_001573466.1| hypothetical protein SARI_04551 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867701|gb|ABX24324.1| hypothetical protein SARI_04551 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 210 Score = 227 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95 M G + LF+G + + ++I K + ++S + + + +++ Sbjct: 1 MGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVMSRGEKME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKS+E+G+ I P+ + + + + + I+A EQC +P I PP Sbjct: 61 FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKRQQWQKIAIAACEQCGRNRVPEIRPP 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 LE D ++ S N+L + V +LIGPEGG ++E Sbjct: 121 MALEAWCAEQDSGLKLNLHPRAHASINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208 >gi|254429679|ref|ZP_05043386.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881] gi|196195848|gb|EDX90807.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881] Length = 239 Score = 227 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 16/233 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R F D + H++ VLRM GD +++FNG+ GEWL+ I+ + K Sbjct: 3 RRFFDDQDFLSGQAVELGASASHHIGKVLRMAVGDELVVFNGRGGEWLASIAAISKKA-V 61 Query: 68 KVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E Q +T V IK R+DY IQK+ E+G G + + T + Sbjct: 62 TIEPQAFTDEDRTAPLAVTVALPMIKGERMDYAIQKATELGAGELVILDTERCEVRLKGE 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + ISA EQC + +P + +L L + +++ + Sbjct: 122 RQDKKLAHWQQVAISACEQCGMNRVPAVRGVLSLRDWLASDLPALKLIAHPGEKPFSPA- 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 A+ P +A+L GPEGG+ +E + F TP +LG R+LR++TA V Sbjct: 181 ----ALQTQPALALLTGPEGGFSDDELQRAADAGF-TPFALGNRVLRAETAPV 228 >gi|163788243|ref|ZP_02182689.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium ALC-1] gi|159876563|gb|EDP70621.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium ALC-1] Length = 234 Score = 227 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 8/231 (3%) Query: 7 LKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++ LF + + T ++ ++ VLR K+GD + + NG + +++S K Sbjct: 1 MQ-LFYNSNISENDTHFSFDKEESRHIVKVLRKKDGDKLHITNGNGWLFEAELSIADIKH 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + ++ + ++ SP K +R ++ ++K+ E+G+ I P+I +++ Sbjct: 60 CSVSINSKTLQGKRSYNLHLAVSPTKMNDRYEWFLEKATEIGIETITPIICDHSERKVVK 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R SA +Q LP + P + + N D + Q A + SL+ Sbjct: 120 TERFEKIIQSAMKQSLQCYLPKLNAPIAFKDFI-NEDFSGQKFIAHCEETDKKSLK--SQ 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 I+ + ILIGPEG + +E E ++ P++LG LR++TAA+ A Sbjct: 177 ISKNKDCTILIGPEGDFSVKEIEMALQHNYI-PVTLGETRLRTETAAIVAC 226 >gi|332878544|ref|ZP_08446264.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683445|gb|EGJ56322.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 242 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 7/232 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + + ++ ++A VLR K+GD + + NGK + ++S+ K Sbjct: 1 MQLFYHPNIDKNTSNCFFDKEESQHIAKVLRKKQGDTLHITNGKGFLFEGQLSFASPKQC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + + + + +P K R ++ ++K+ E+G+ I P+I ++++ T + Sbjct: 61 EVSILKCQEQIHRPYHLHLVVAPTKMNERYEWFLEKATEIGIDEITPIICQHSERTSLKL 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLH 182 +R +SA +Q LP + P T K D + + + + L Sbjct: 121 ERFEKIILSAMKQSLQCYLPTLNSPITSAAFFKQMMTDTSDKYIAHCQENEKILLSNALT 180 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ++ + ILIGPEG + EE T + F P+SLG LR++TAA+ A Sbjct: 181 PLSE--RITILIGPEGDFSEEEISTAIAQGF-RPISLGDTRLRTETAAIVAC 229 >gi|296112908|ref|YP_003626846.1| putative RNA methyltransferase [Moraxella catarrhalis RH4] gi|295920602|gb|ADG60953.1| putative RNA methyltransferase [Moraxella catarrhalis RH4] gi|326567975|gb|EGE18072.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis BC1] gi|326577430|gb|EGE27314.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis O35E] Length = 247 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 18/242 (7%) Query: 7 LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL I H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118 KS K++ Y ++T + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120 Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + ++ ++A EQC + +P I P L+ + N ++V A + Sbjct: 121 KYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + KL N+++LIG EGG E + FV P +G R+LR++TA V A++ Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVVALS 233 Query: 236 LV 237 + Sbjct: 234 AL 235 >gi|260888226|ref|ZP_05899489.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC 35185] gi|330838435|ref|YP_004413015.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas sputigena ATCC 35185] gi|260862060|gb|EEX76560.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC 35185] gi|329746199|gb|AEB99555.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas sputigena ATCC 35185] Length = 261 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 128/248 (51%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 ++R+F++ + + + G H+L V+R K G+ +L+ +G G ++++ + + Sbjct: 1 MRRVFLEGEIADTMEVR--GADAHHLQRVMRAKLGEKLLVADGAGGSAEAEVAGFADGRV 58 Query: 66 RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + V S + Q++++ K +R+D+++QK+ E+G+ IRPV+++ + Sbjct: 59 QLRFVRRLSEAAESQAEIELFQCLPKGDRMDFIVQKTTELGVACIRPVLSQNVVVRYDEK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSE 175 ++R + AA+QC +P + P L ++ ++ ++ F + E Sbjct: 119 KARARVERWQKIAAEAAKQCGRTRIPEVMPIVPLRAAMEGQGAAEYALRLFFYEMEERRE 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + + + + +L+GPEGG+ E + + F + ++LG RILR DTAA+ A+A Sbjct: 179 --LRTVLSDSEARRIFMLVGPEGGFDEAEAQLAVAHGF-SAVTLGRRILRVDTAAIVALA 235 Query: 236 LVQAICGD 243 LVQ GD Sbjct: 236 LVQYEKGD 243 >gi|332364867|gb|EGJ42636.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1059] Length = 247 Score = 227 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 VE + + V K ++L+++ QK+ E+G AI V + Sbjct: 59 LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L +I+ A E E Sbjct: 119 LGKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + V + GPEGG +E + V+ LGPRILR++TA + A+ Sbjct: 179 ALFRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|163754910|ref|ZP_02162031.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1] gi|161324977|gb|EDP96305.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1] Length = 235 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 6/230 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + S ++ ++ VLR KE D + + NGK + + I+ K+ Sbjct: 1 MQLFYTPEITSETKNYTFSKEESRHIVRVLRKKEDDILHITNGKGYIFSAIITVADQKNC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K++ K + +P K +R ++ ++K+ E+G+ I P+I +++ Sbjct: 61 MVKIQSFEFQPQKSYKLHLAVAPTKMNDRYEWFLEKATEIGIDTITPIICDHSERKVIKA 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R SA +Q P + P + + + E ++ E L Sbjct: 121 ERFEKIIQSATKQSLSAYFPKLKPAISFSNFISTHTDEQLFIAHCEENEKQSLKEALKI- 179 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +V ILIGPEG + ++E + ++ P++LG LR++TAA+ A Sbjct: 180 --QKDVTILIGPEGDFSTKEIQLALDHNYI-PVTLGETRLRTETAAIVAC 226 >gi|78224577|ref|YP_386324.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter metallireducens GS-15] gi|78195832|gb|ABB33599.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 263 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 109/245 (44%), Gaps = 11/245 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 +R + GD + ++ VLR+K + L +G E I +G+ + Sbjct: 4 RRFMAPGADLAGESVRIEGDLFRHMVKVLRLKIDTRVRLADGHGVECAGIIQEIGRDHLT 63 Query: 67 FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE + + I K +++ ++QK E+G+ + P + Sbjct: 64 VAVEERHAVAPVGGSLRITLIQGLPKGEKMELILQKGTELGVNEVVPFQADRSVSRIPAD 123 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + AA Q L +P + ++ +++ DH+ +++ +E + Sbjct: 124 RQDERLRRWQRIAAEAARQAGRLDIPTVQLAQGMDEAVRDTDHDLKLLLWEEERAT-TLQ 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ ++A+++GPEGG EE ET F+ P++LG RILR++TA +A +A++Q Sbjct: 183 GAINVRPRPASIAVIVGPEGGLTREEAETARRTGFI-PVTLGRRILRTETAGIALLAILQ 241 Query: 239 AICGD 243 + GD Sbjct: 242 YLYGD 246 >gi|255693403|ref|ZP_05417078.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM 17565] gi|260620787|gb|EEX43658.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM 17565] Length = 232 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 9/220 (4%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80 + ++ + VLR+ GD I L +GK + ++I+ K + E + Sbjct: 14 ELPDEEAQHCIRVLRLNIGDEITLTDGKGNFYKAEITAATNKRCLVAIKETVFQEPLWPC 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA +Q Sbjct: 74 HLHIGMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 LP + T + + + + I E G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMTDFDKFITREFKGQKFIAHCYE--GDKPLLKNI--LKPGEDALVLIGPEG 189 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE + FV P+SLG LR++TAA+AA ++ Sbjct: 190 DFSEEEVKKAIEQGFV-PISLGKSRLRTETAALAACHILN 228 >gi|319892635|ref|YP_004149510.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus pseudintermedius HKU10-03] gi|317162331|gb|ADV05874.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus pseudintermedius HKU10-03] gi|323464327|gb|ADX76480.1| ribosomal RNA small subunit methyltransferase E, probable [Staphylococcus pseudintermedius ED99] Length = 250 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 101/247 (40%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--K 63 ++R F++ + + + H++ V+R GD +++ + KI + + Sbjct: 1 MQRYFLNENAEQHQRFFITNNNDIHHIKSVMRQNVGDALIINFLNAVTYRCKIIDIEAQR 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 VE ++ IK ++ ++++QK+ E+G + R V+ Sbjct: 61 ITIETVERIEVETELPLNITICSGLIKGDKYEWLLQKATELGATSFIITQMDRSVVKLNQ 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q ++R + AAEQ +P + + L + ++ A E +N Sbjct: 121 QKAAKKVERWQKIVKEAAEQSYRQAVPQVKFVSNLHEIYDMIGQYDCVLMAYEAAAKQNE 180 Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++L H +V +L GPEGG+ E + + LGPRILR++TA + A Sbjct: 181 RALFKQQLRQFKHGSHVLLLFGPEGGFSENEIALFEDV--AQSVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISYE 245 >gi|254447345|ref|ZP_05060811.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium HTCC5015] gi|198262688|gb|EDY86967.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium HTCC5015] Length = 245 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 14/244 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRF 67 RL+ D L + + H+L VLR +G +LLFN + D E+ +++ K Sbjct: 5 RLYCDQVLNVGDEVTLDAVTSHHLCTVLRAHQGSIVLLFNNREDAEYEAELIKPHKKNAC 64 Query: 68 KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 Q + + + +R+D+ IQK+ EMG I PV+ + + Sbjct: 65 VRLTQRVECFRESSLYIHLYQGVSRGDRMDFAIQKATEMGAHEITPVLCERSQIKLSGER 124 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + ISA +Q L + + L D +F D Sbjct: 125 GEKKRAHWQQIIISACQQSGRCRLAKLNAVQHFQEALLQRDAQSVGLFLDTQTSQSGDA- 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A+ V + IGPEGG+ E + + +SLGPRILR++TAA+AA+ Q Sbjct: 184 ---ALRQAQRVDLWIGPEGGFDPTEVQAAQDQG-LASVSLGPRILRTETAAIAALTYCQL 239 Query: 240 ICGD 243 I GD Sbjct: 240 ISGD 243 >gi|257885342|ref|ZP_05664995.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257821198|gb|EEV48328.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 254 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ K G+ YH++ V+RM+ D + L +++I+ + + Sbjct: 1 MQRYFLKESYESKDYFVLEGENYHHIVRVMRMEPEDEVFLAFNDRIAIVAEITEITEEAV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 + +++ + + S + K +LD+++QKS E+G A V+ + Sbjct: 61 YLKEIKKEENQKELPSSITIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 R+ AAEQ +P + T + L + D ++ A E + Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEK 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+ + L + + GPEGG +E + + LGPRILR++TA + + Sbjct: 181 SNAAKILSETKPDSRILAVFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTETAPLYLL 239 Query: 235 ALVQAIC 241 + Sbjct: 240 SAASYQW 246 >gi|314936302|ref|ZP_07843649.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp. hominis C80] gi|313654921|gb|EFS18666.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp. hominis C80] Length = 250 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 ++R F++ + + + H++ +V+R G+ I++ ++S+I+ + + Sbjct: 1 MQRYFINQNADSHQRFFITNEEDIHHIKNVMRNTVGNKIIINFNDKKVFISEITNINSNQ 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + DV IK ++ ++++QKS E+G V + Sbjct: 61 IEILPINQLDIDTELPVDVTICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQE 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 +DR + AAEQ L +P + + L+ + ++ ++ A E Sbjct: 121 NKVQKKIDRWQKIVKEAAEQSYRLVIPDVKFQSNLKVIYDTINNYDYVLIAYEDEAKHGE 180 Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + L+ V I+ GPEGG+ +E + + + LGPRILR++TA + A Sbjct: 181 KSRFKNILNNFQTNDRVLIIFGPEGGFSDKEIDLFREVS--LNVGLGPRILRAETAPLYA 238 Query: 234 MALVQAI 240 ++ + Sbjct: 239 LSAISFE 245 >gi|56552450|ref|YP_163289.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp. mobilis ZM4] gi|56544024|gb|AAV90178.1| protein of unknown function DUF558 [Zymomonas mobilis subsp. mobilis ZM4] Length = 256 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L RL+V+ L ++ Q HYL V+R K G ++LF+ GEWL ++ G K + Sbjct: 12 LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + K+ + + D+ + +PIK R+D++ +K+ E+G+ I PVIT+ T N++ Sbjct: 72 QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ + + AAEQC +L + +L+ LL W + + FADET G E +E L Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 AIL+GPEGG+ +E++ ++++ P+SLGPRILR Sbjct: 191 MA--AAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILR 228 >gi|169334045|ref|ZP_02861238.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM 17244] gi|169258762|gb|EDS72728.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM 17244] Length = 249 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 115/244 (47%), Gaps = 15/244 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R F + + ++ LRMKEGDNI + + ++ ++ +++ Sbjct: 10 KMPRFFCINK--ENDRFYLDKEDSKHIIKSLRMKEGDNITICDKNGYDYECELIIDSENV 67 Query: 66 RFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + K+ + + T+ + + K+++ + ++QK+VE+G+ I P++T + Sbjct: 68 QGKIISKKENDTEPNVKITLYQALPKSDKFETIVQKTVELGIYEIVPIMTNRCISRPDKK 127 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 + ++R AA+Q +P + T + +K D + +I+F + G EN Sbjct: 128 SMKKKIERYNKIAFEAAKQSGRGIIPRVRDMITFKEAIKEIKDFDMKILFYEN--GGENL 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + ++ ++A ++G EGG+ + E + VT + LG RILR +TA +AA++ + Sbjct: 186 KD--FKYENLNDIAFIVGSEGGFDALEAKYAKENE-VTLMGLGKRILRCETAPIAALSAL 242 Query: 238 QAIC 241 + Sbjct: 243 MLLT 246 >gi|253698878|ref|YP_003020067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sp. M21] gi|251773728|gb|ACT16309.1| protein of unknown function DUF558 [Geobacter sp. M21] Length = 246 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ F+ +G+ Y ++A VLR+KEG + L + VG K + Sbjct: 1 MRSFFLGDNAVCGDSVTITGELYRHMARVLRIKEGSEVELIENGGARHRGTVEEVGAKKL 60 Query: 66 RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 ++ ++ + + K +LD ++QK E+G+ + R V+ + Sbjct: 61 TVRISASVAPSAEEPGLRITLLQGMPKGEKLDLILQKCTELGVAEVVVFDAARSVVKLHG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R AA Q + P + TL +L + H +++ E Sbjct: 121 DRSAARLSRYEKIVQEAARQSGRHSSPKVALGGTLAEVLADSSHEVKLLL-YEGEEKTTL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + A+ +VA+++GPEGG EE + F TP++LG RILR++TA +A ++++ Sbjct: 180 HDCFGAVVAPKSVAVVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSIL 238 Query: 238 QAICGD 243 Q GD Sbjct: 239 QFHWGD 244 >gi|226324635|ref|ZP_03800153.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758] gi|225207083|gb|EEG89437.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758] Length = 245 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 111/244 (45%), Gaps = 10/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV + + G +++ +VLRMK + + +G+ +L ++ + + Sbjct: 1 MHHFFVTPQQISGDKIRIEGGDVNHMKNVLRMKLHEKAEISDGESRTYLCEVEAYEEDVA 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 +E S + K+++++ ++QK+VE+G+ + PV + + Sbjct: 61 VLHILEEMEADTEPASKLYLFQGLPKSDKMELIVQKAVELGVYQVIPVAMKRSVVRLDDK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 DR + SAA+Q +P + P + + LK + + ++ + G E + Sbjct: 121 KAAKKADRWNSIAESAAKQAGRSRIPEVTMPLSYKEALKMAEELDVTLLPYELAGGMEVT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + I +V I IGPEGG+ EE + S+ ++LG RILR++TA +A +A++ Sbjct: 181 REVIRQIKSGQSVGIFIGPEGGFEPEEVDAAVSMG-ARVITLGRRILRTETAGLATLAIL 239 Query: 238 QAIC 241 Sbjct: 240 MFEL 243 >gi|323345370|ref|ZP_08085593.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269] gi|323093484|gb|EFZ36062.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269] Length = 248 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 8/240 (3%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++ +V Q + D+ + VLR+K GD L +G + ++++ K Sbjct: 3 EMRYFYVP---DAGRQTELPPDEAAHALRVLRLKAGDEFFLMDGAGSFFRAELTVTSAKR 59 Query: 65 IRFKVE-YQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + V+ +++T + +P K R++++++K+ E+G + + R+++ Sbjct: 60 CMYAVKAVLPQTKTWNGHIHLAIAPTKMMERMEWLVEKATEIGFDELSLLDCRFSERRQV 119 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKL 181 R+ +SA +Q P ++ T + +++ I + E+ +KL Sbjct: 120 KTARLEKIVVSAVKQSRKPWKPLVHEMTDFKTFVESRQKGRYFIAHCYDDVPKEDLYDKL 179 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + +V +LIGPEG + EE P+SLG LR++TA + A+++ Q Sbjct: 180 TKHSGNEDVTVLIGPEGDFSIEEVNFALEHG-CEPVSLGASRLRTETAGLLAVSMAQLAF 238 >gi|148380908|ref|YP_001255449.1| hypothetical protein CBO2956 [Clostridium botulinum A str. ATCC 3502] gi|153934252|ref|YP_001385216.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A str. ATCC 19397] gi|153934969|ref|YP_001388685.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A str. Hall] gi|148290392|emb|CAL84519.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152930296|gb|ABS35796.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str. ATCC 19397] gi|152930883|gb|ABS36382.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str. Hall] Length = 252 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 28/256 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FV I + GD ++ VLR++ GD I + N + E+ +I + K + Sbjct: 1 MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 K+ Q + ++ K+ ++D ++QKS E+G+ I PVIT + Sbjct: 61 VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLK 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + P LL+ IV E+ + Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180 Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + I + + E L + ++LGPRI R++ Sbjct: 181 LIKNIEYEKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231 Query: 228 TAAVAAMALVQAICGD 243 TA + +++ GD Sbjct: 232 TAGIVCASIISYELGD 247 >gi|170756725|ref|YP_001782589.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B1 str. Okra] gi|226950382|ref|YP_002805473.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A2 str. Kyoto] gi|169121937|gb|ACA45773.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum B1 str. Okra] gi|226842685|gb|ACO85351.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A2 str. Kyoto] Length = 252 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 28/256 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FV I + GD ++ VLR++ GD I + N + E+ +I + K + Sbjct: 1 MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 K+ Q + ++ K+ ++D ++QKS E+G+ I P+IT + Sbjct: 61 VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + P LL+ IV E+ + Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180 Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + I + + E L + ++LGPRI R++ Sbjct: 181 LIKNIEYKKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231 Query: 228 TAAVAAMALVQAICGD 243 TA + +++ GD Sbjct: 232 TAGIVCASIISYELGD 247 >gi|168181642|ref|ZP_02616306.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf] gi|237796409|ref|YP_002863961.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum Ba4 str. 657] gi|182675193|gb|EDT87154.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf] gi|229262623|gb|ACQ53656.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Ba4 str. 657] Length = 252 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 28/256 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FV I + GD ++ VLR++ GD I + N + E+ +I + K + Sbjct: 1 MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 K+ Q + ++ K+ ++D ++QKS E+G+ I PVIT + Sbjct: 61 VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLK 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + P LL+ IV E+ + Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEETKGMDLIVVPYESKENYGIKS 180 Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + I + + E L + ++LGPRI R++ Sbjct: 181 LIKNIEYEKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231 Query: 228 TAAVAAMALVQAICGD 243 TA + +++ GD Sbjct: 232 TAGIVCASIISYELGD 247 >gi|170758760|ref|YP_001788269.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A3 str. Loch Maree] gi|169405749|gb|ACA54160.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A3 str. Loch Maree] Length = 252 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 100/256 (39%), Gaps = 28/256 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FV I + GD ++ VLR++ GD I + N + E+ +I + K + Sbjct: 1 MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 K+ Q + ++ K+ ++D ++QKS E+G+ I P+IT + Sbjct: 61 VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + P LL+ IV E+ + Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPNVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180 Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + +I + + E L + ++LGPRI R++ Sbjct: 181 LIKSIEYEKENIKNIGIIIGPEGG--------FEESEIRALEKIK-AQIVTLGPRIFRTE 231 Query: 228 TAAVAAMALVQAICGD 243 TA + +++ GD Sbjct: 232 TAGIVCASIISYELGD 247 >gi|77920669|ref|YP_358484.1| hypothetical protein Pcar_3079 [Pelobacter carbinolicus DSM 2380] gi|77546752|gb|ABA90314.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 244 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + R F+ + + + ++A VLR+ G ILL +G +I ++ KS Sbjct: 1 MHRFFIAPDVLRHDHIALTDEILRHMA-VLRLARGAEILLLDGLGNLCHCRIDHLDRKSG 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V + Q V+ + + K ++++ ++QK E+G+ P+ T + + Sbjct: 60 SAMVLSRCTQQETAFPVELMQALPKADKMELVLQKGTELGITGFTPLQTSRSVPRLKPER 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R AA QC LP + L+ L +++ +E L+ Sbjct: 120 ETQRHQRWLRIIREAARQCRRPLLPSLAAIRPLDEALGQCRSELRLMLWEE---GSQPLD 176 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A+LIGPEGG+ EE ET FV P+ GPRILRS+TA AA ++Q Sbjct: 177 AVLPERIPAGAAVLIGPEGGFSREEAETARQHGFV-PVLFGPRILRSETAGFAAATILQY 235 Query: 240 ICGD 243 GD Sbjct: 236 RYGD 239 >gi|240145922|ref|ZP_04744523.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82] gi|257201987|gb|EEV00272.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82] Length = 251 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 112/245 (45%), Gaps = 17/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FV+ K G +++ +VLRMK G+ I + + +I+ + S + Sbjct: 1 MYQFFVESGQIGKDSVMIEGSDVNHIKNVLRMKPGEKIRISGPARENYFCEIAEIEDSFV 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 R + + + T+ + + K ++++ +IQK+VE+G+ I PV + + Sbjct: 61 RASILEKDETGTELPNRIYLFQGLPKNDKMELIIQKAVELGVYEIIPVAMKNCV---VKL 117 Query: 125 D---------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGS 174 D R + SAA+Q +P + P + + + + ++V + G Sbjct: 118 DAKKAAAKTARWQGIAESAAKQSKRSLIPKVSEPVSYKEAVAYAMKLDQKLVPYENERGM 177 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + E + A+ ++ I IGPEGG+ EE E + + +SLG RILR++TA + Sbjct: 178 AATREAVEAVRPGESIGIFIGPEGGFAPEEIEAVK--GEMKLISLGSRILRTETAGFTTL 235 Query: 235 ALVQA 239 A++ Sbjct: 236 AILMY 240 >gi|157150621|ref|YP_001451092.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus gordonii str. Challis substr. CH1] gi|157075415|gb|ABV10098.1| conserved hypothetical protein TIGR00046 [Streptococcus gordonii str. Challis substr. CH1] Length = 247 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 14/245 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEDDQVTLVFDDGVKRLARVLDSSQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK+ E+G AI V + Sbjct: 59 LEILEELADNSELPVRVTIASGFPKGDKLEFIAQKATELGASAIWGFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L IV A E E Sbjct: 119 LDKKTEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAQLAQFDTIVVAYEESAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L +A V + GPEGG +E + H V+ LGPRILR++TA + + Sbjct: 179 ALVRALSGLAAGAKVLFIFGPEGGLSPDEIDAFHQAGAVSA-GLGPRILRAETAPLYVLT 237 Query: 236 LVQAI 240 V + Sbjct: 238 AVSVL 242 >gi|194467763|ref|ZP_03073749.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23] gi|194452616|gb|EDX41514.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23] Length = 246 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 14/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + + H+L V+R + G ++ L +L+ +S + Sbjct: 1 MQRYFVNA--TPADEVTLPSEAAHHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTAT 58 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ + + ++ V K + + ++QK+ E+G I + Sbjct: 59 LKINQKLDADSELPVSVTLACGIPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGN 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 ++R++ SAAEQ +P + L+ LL N+ +IV +E+ + Sbjct: 119 KQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLANYPATERIVAWEESAKQGETS 178 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ +A+ ++ + GPEGG E ++ V LGPRILR++TA + MA Sbjct: 179 ALAQQFNALKPGDSILAVFGPEGGLSENEIAKMNEAG-VVAAGLGPRILRTETAPLYFMA 237 Query: 236 LVQA 239 + Sbjct: 238 AISY 241 >gi|325689540|gb|EGD31545.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK115] Length = 250 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 20/249 (8%) Query: 7 LKRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ F+ PL D ++ V+R+K GD + + L+++ Sbjct: 1 MQQYFIKGNPQTPL-----VVTDKDTAKHMFSVMRLKAGDQVTFVFDDGVKRLARVLDPS 55 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 + VE + + V K ++L+++ QK+ E+G AI V Sbjct: 56 QQSLEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWGFPADWSVAKWD 115 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +++ AAEQ +P I L +I+ A E E Sbjct: 116 GKKLAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKVDFLAALTDFDRIIVAYEELAKEG 175 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + L +A V + GPEGG +E V+ LGPRILR++TA + Sbjct: 176 ESAALVRALSGLAAGAKVLFIFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLY 234 Query: 233 AMALVQAIC 241 A+ V + Sbjct: 235 ALTAVSVLL 243 >gi|260583902|ref|ZP_05851650.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC 700633] gi|260158528|gb|EEW93596.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC 700633] Length = 250 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F++ + + DQ H++ V+RM ++ + + + +++KI+ + Sbjct: 1 MQRYFINQVVQSVGEKISVLKDQEHHMLKVMRMNIEESCEVVDENEQLYIAKITQLSPFE 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119 E++ + DV K ++L+ ++QK+ E+G+ I PV + Sbjct: 61 LRIEEHKEQQVELPIDVTIFVGLSKGDKLETIVQKATELGVHTIVPVEMKRNMVKWTKDK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF--LLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ L +P + TL+ +L + F + E + Sbjct: 121 SQKKIERLQKIAQEAAEQSHRLHVPKVLDLMTLKESVVLAKQSTKALVAFEEVAKEGEAA 180 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ L ++ ++A GPEGG+ +E E L+S V +LGPRILR++TA + A+A Sbjct: 181 VFVQTLTSLQKGDSIAFYFGPEGGFDLQEIEYLNSQE-VHSCALGPRILRAETAPMYALA 239 Query: 236 LVQAIC 241 V Sbjct: 240 AVSYHF 245 >gi|120436000|ref|YP_861686.1| 16S ribosomal RNA methyltransferase RsmE [Gramella forsetii KT0803] gi|117578150|emb|CAL66619.1| protein containing DUF558 [Gramella forsetii KT0803] Length = 237 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 5/230 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + Q D+ ++ VLR EGD + + NG ++I K Sbjct: 1 MQLFYNPEISEKDKQIIFPKDESKHIVKVLRKSEGDILNITNGNGLLINAEIIKADIKQC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 KV + V I +P K +R ++ ++K++E+G+ I P+I +++ + Sbjct: 61 LAKVISVEKQPAPPYYVHMIVAPTKMNDRYEWFLEKAMEIGVHEITPIICDHSERKVVKL 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R SA +Q +P + P + + + E +N L+ + I Sbjct: 121 NRFERVLQSAMKQSLHYRMPKLNDPINFSDFIATEIEGSKYIAHCEEETGKNYLQ--NEI 178 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N+ ILIGPEG + EE E + + +SLG LR++TAA+ A Sbjct: 179 IPGENINILIGPEGDFSKEEIEKAINKGW-NAVSLGDSRLRTETAAIVAC 227 >gi|323353566|ref|ZP_08088099.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66] gi|322121512|gb|EFX93275.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66] Length = 250 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 20/249 (8%) Query: 7 LKRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ F+ PL + D ++ V+R+KEGD + L + L+++ Sbjct: 1 MQQYFIKGSPQSPLAVT-----DKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPS 55 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 + +E + + V K ++L+++ QK E+G AI V Sbjct: 56 QQSLEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWD 115 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +++ AAEQ +P I L +I+ A E Sbjct: 116 GKKLAKKSEKLEKIAQGAAEQSKRNLIPEIRLFNKKADFLATLADFDRIIVAYEESAKAG 175 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + L +A V + GPEGG +E V+ LGPRILR++TA + Sbjct: 176 ETAALVSALSGLAAGAKVLFIFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLY 234 Query: 233 AMALVQAIC 241 A+ V + Sbjct: 235 ALTAVSVLL 243 >gi|325688555|gb|EGD30572.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK72] Length = 250 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + I Sbjct: 1 MQQYFIKGSPQSP--LLVTDKDTAKHMFSVMRLKEGDQVTLVFDDGMKRLARVLDPSQQI 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 VE + + V K ++L+++ QK+ E+G AI V + Sbjct: 59 LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGTSAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFQAALADFDCIIIAYEESAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L +A V + GPEGG EE V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLAAGAKVLFIFGPEGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|332886055|gb|EGK06299.1| hypothetical protein HMPREF9456_00173 [Dysgonomonas mossii DSM 22836] Length = 234 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 10/234 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 + L + ++ + VLR KEGD I L +GK + ++I Sbjct: 6 FYTPDILSNP---ELPLEEAQHCIKVLRKKEGDEIFLTDGKGSFYDAEIIQANPKHCHVN 62 Query: 70 EYQSRSQTKQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ Q K ++ F+P K +R+++ +K+ E+G+ P++ +++ + R Sbjct: 63 ILKTIVQPKNWKCNIHIAFAPTKNIDRIEWFAEKATEIGVDRFSPLLCHHSERREIKLQR 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + +SA +Q LP + + +K D Q A + SL+ + + Sbjct: 123 IEKILVSAMKQSQKAILPQLDEMQSFSKFVKQ-DFEAQKFIAHCYPSEKKSLKDAYKL-- 179 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 NV ILIGPEG + +E E F P++LG LR++TAA+AA + + Sbjct: 180 GENVLILIGPEGDFSEQEVEEAMKNGF-QPVTLGESRLRTETAALAACHSIHVL 232 >gi|168179387|ref|ZP_02614051.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum NCTC 2916] gi|182669772|gb|EDT81748.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum NCTC 2916] gi|322807273|emb|CBZ04847.1| ribosomal RNA small subunit methyltransferase E [Clostridium botulinum H04402 065] Length = 252 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 28/256 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FV I + GD ++ VLR++ GD I + N + E+ +I + K + Sbjct: 1 MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 K+ Q + ++ K+ ++D ++QKS E+G+ I P+IT + Sbjct: 61 VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + P LL+ IV E+ + Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180 Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + I + + E L + ++LGPRI R++ Sbjct: 181 LIKNIEYEKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231 Query: 228 TAAVAAMALVQAICGD 243 TA + +++ GD Sbjct: 232 TAGIVCASIISYELGD 247 >gi|325266078|ref|ZP_08132764.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394] gi|324982716|gb|EGC18342.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394] Length = 241 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R ++ L + + ++ HVLR++ GD I+LF+G+ + + V K Sbjct: 1 MPRFYLPQ-LPNQGELALPESIVRHI-HVLRLQAGDEIVLFDGQGMRVAATLQQVEKRKA 58 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ S ++ + I + R+D+ +QKSVE+G+ +I PV++ + Sbjct: 59 ACTIDSFLESDSESPLRIHLIQAVSSGERMDFTLQKSVELGVASITPVLSERCVVRLQGE 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQC +P + P L L+ + +++ Sbjct: 119 RADKRVQRWQEIAVSACEQCGRDIVPPVRPILRLADYLRQAAAEDGLKLLMSLQNAQSLR 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 EK A V +LIGPEGG+ + E++ F ++LG RILR++TA++AA+A +Q Sbjct: 179 EKQPAQRP---VYLLIGPEGGWTAAEEQAAVQAGF-EAITLGKRILRTETASLAAIAAMQ 234 Query: 239 AICGDW 244 + GD+ Sbjct: 235 TLWGDF 240 >gi|315499603|ref|YP_004088406.1| hypothetical protein Astex_2610 [Asticcacaulis excentricus CB 48] gi|315417615|gb|ADU14255.1| protein of unknown function DUF558 [Asticcacaulis excentricus CB 48] Length = 248 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 138/250 (55%), Gaps = 15/250 (6%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + RLF+ P + DQ Y+A V+R+ +GD I +FNG+DGEW ++ V K Sbjct: 1 MIRLFIAETTPPFAEGLIFPLNPDQARYVAAVMRLGDGDEISVFNGRDGEWRGRLQAVSK 60 Query: 64 S-IRFKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + ++ Q+R Q + + + +K RL+ +I+K+ E+G+G I+ +ITR T H Sbjct: 61 KHVHVELIAQARPQPAAGNAPKLLIALVKRGRLETIIEKATELGVGEIQLLITRRTNADH 120 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------ 175 N+ R++ AAEQ + L +P + P LE LK +++ DE E Sbjct: 121 TNLARLQLIAQEAAEQTERLDVPQVLAPVKLEVYLKAASET--LIYGDEDSTHETGERTI 178 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 LE L + V+ILIGPEGG+ + E++TL P ++LGPRILR+DTAA++A+ Sbjct: 179 SPMLEALSGLGEGA-VSILIGPEGGFDAVERQTLSVQPNTVAVNLGPRILRADTAAISAL 237 Query: 235 ALVQAICGDW 244 L QA+ GDW Sbjct: 238 TLYQAVRGDW 247 >gi|257870868|ref|ZP_05650521.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257805032|gb|EEV33854.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 251 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ K G+ +H++ V+RM D + L L+KI + + + Sbjct: 1 MQRYFLNEDYEAKPVYVVEGEPFHHMVRVMRMVPDDCVYLVFQDQVAILAKIQQIDEQVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118 +E + Q K+ + + K ++L+ ++QK E+G V+ + Sbjct: 61 HLIEVEKEQQDKELPIHVTIASGYPKGDKLELIVQKGTELGAAKFIGFPAQSSVVKWDHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---- 174 R++ AAEQ +P I + + L + + ++ A E Sbjct: 121 KLQKKQQRLQKIAQEAAEQAQRQRVPIIQLAASDKELWDSLSNYDYVIVAYEESAKSGEN 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ++ L A + + GPEGG E S V LGPRILR++TA + Sbjct: 181 AKLIDILSKAAPGSKILAIFGPEGGLTPAEITRAESQGAV-ICGLGPRILRTETAPFYFL 239 Query: 235 ALVQAIC 241 + V + Sbjct: 240 SAVSVLT 246 >gi|153940109|ref|YP_001392233.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum F str. Langeland] gi|152936005|gb|ABS41503.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str. Langeland] gi|295320231|gb|ADG00609.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str. 230613] Length = 252 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 98/256 (38%), Gaps = 28/256 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV I + GD ++ VLR++ GD I + N + E+ +I + K Sbjct: 1 MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 +E + ++ K+ ++D ++QKS E+G+ I P+IT + Sbjct: 61 VVKILEQVEVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + P LL+ IV E+ + Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180 Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + +I + + E L + ++LGPRI R++ Sbjct: 181 LVKSIEYEKENIKNIGIIIGPEGG--------FEESEIRALEKIK-AQIVTLGPRIFRTE 231 Query: 228 TAAVAAMALVQAICGD 243 TA + +++ GD Sbjct: 232 TAGIVCASIISYELGD 247 >gi|301309334|ref|ZP_07215276.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3] gi|300832423|gb|EFK63051.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3] Length = 232 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 10/237 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + I + + ++ + VLR+ EGD I+L +G+ + + IS K Sbjct: 1 MQIFYTP---DITIKPELPEEEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPKHC 57 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + E + ++ +P K +R+++ ++K+ E+G+ AI + R+++ Sbjct: 58 EVTLLESWKQPDLWNFNLHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIK 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ +SA +Q TLP + T + + + + A G + L+ H Sbjct: 118 PIRLEKILVSAMKQSQKATLPALEGMTDFKKFVAT-PFDGRKFIAHCEEGEKPLLK--HT 174 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N ILIGPEG + EE + F P+SLG LR++TAA+ A + + Sbjct: 175 YQPGENALILIGPEGDFSPEEIKLAQENGF-EPISLGESRLRTETAALVACHTIHVL 230 >gi|238917092|ref|YP_002930609.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750] gi|238872452|gb|ACR72162.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750] Length = 245 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + F + + G +++ +VLR KEGD +L+ +G + ++ I+ + I Sbjct: 1 MYHFFAEHENIHDSYIDIVGSDVNHIKNVLRFKEGDKLLISSGDNVDYECSIASMSDEYI 60 Query: 66 RFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 R + + + S + K ++++ +IQK+VE+G ++ PV + + Sbjct: 61 RADILSKDEQGKELPSRIILFQGLPKADKMELIIQKAVELGAYSVVPVAMKRSVVKLDAK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177 ++R +SAA+Q P + T + L+ +++ E G E + Sbjct: 121 KAKAKVERWNGIALSAAKQSKRSIQPEVTEVMTFKQALEYAGKLDKLLLPYECAEGMEKT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + I H +V I IGPEGG+ E + + ++LG RILR++TA + ++++ Sbjct: 181 RKVIEEIGHGESVGIFIGPEGGFDRSELDEAVNAG-CEIITLGKRILRTETAGMMLLSVL 239 Query: 238 QA 239 Sbjct: 240 MY 241 >gi|295134596|ref|YP_003585272.1| RNA methyltransferase [Zunongwangia profunda SM-A87] gi|294982611|gb|ADF53076.1| RNA methyltransferase [Zunongwangia profunda SM-A87] Length = 237 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 101/236 (42%), Gaps = 5/236 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ F Q S ++ ++ VLR EG + + NGK + ++I K Sbjct: 1 MQLFFQPDIEESAQQIVFSREESKHIIKVLRRSEGALLKVTNGKGLLFTAQIINADIKQC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+ + + +P K +R ++ ++K+ E+G+ I PVI +++ + Sbjct: 61 VAKIIDTEKQAKPNYWLHLAVAPTKMNDRYEWFLEKATEIGVDEITPVICEHSERKVVKL 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DR SA +Q +P + P ++ + + E L+ HA Sbjct: 121 DRYERVLQSAMKQSLHFRMPKLNEPVDFTAFIEKQFEAEKFIAHCEDDQPRVLLQ--HAA 178 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + ILIGPEG + EE + F +P+SLG LR++TAA+ A + + Sbjct: 179 TAVADTLILIGPEGDFSPEEIRLALTNKF-SPVSLGSNRLRTETAAIVACHTINLL 233 >gi|329904946|ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] gi|327547805|gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 15/231 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R PL I + H++ V+R++ G + LFNG E+++ +S + K R Sbjct: 1 MPRFHCPLPLAIGDILVLPDNVAHHI-QVIRLQAGSMVTLFNGDGNEYVATLSVLEKK-R 58 Query: 67 FKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 VE + RS + + + +++D++I+K+VE+G I+P+ + Sbjct: 59 VTVEIKTCTERSVELPYAITLAQALPEASKMDWIIEKAVELGAAGIQPLSAQRCVVRLSA 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + +SA+EQ L + P + + D + +I+ + S Sbjct: 119 ERAEKRQLHWQGIIVSASEQSGRNRLAQLAPVSDFSRWIAQQDIHKRILLTPRA---DQS 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L V +LIGPEGG +E+ + + LS+GPR+LR++T Sbjct: 176 LADWARHQPPQAVTLLIGPEGGLSDDEENLAIAHGAI-ALSMGPRVLRTET 225 >gi|189467796|ref|ZP_03016581.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM 17393] gi|189436060|gb|EDV05045.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM 17393] Length = 232 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I+T+ + ++ + VLR+ GD I L +GK + ++IS K + E + Sbjct: 9 IQTRAELPEEEAQHCIRVLRLNIGDQITLTDGKGYFYRAEISAATNKRCMVNILETIYQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ ++R+ +SA Sbjct: 69 PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKIERISKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPQLNEMTDFNKFIAQ-PFKGQKFIAHCYEGEKPLLKDV--LRKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + F TP+SLG LR++TAA+ A ++ Sbjct: 186 GPEGDFSEEEVQKAIENGF-TPISLGKSRLRTETAALVACHILN 228 >gi|225027417|ref|ZP_03716609.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353] gi|224955244|gb|EEG36453.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353] Length = 248 Score = 225 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 110/246 (44%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKS 64 + + F+ + + +++ +VLRMK+G+ + L K E++ I + Sbjct: 1 MYQFFIQPDSIKEEEIWIADPQDVNHIRNVLRMKKGEKVSLCCEAKGKEYICSIEEIESD 60 Query: 65 IR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120 I ++ S+ + K+++++ +IQK+VE+G+ I P+ T+ Sbjct: 61 IVKAAIIDINGESRELPVKITLFQGLPKSDKMELIIQKAVELGVAEIVPMATKRAVVKLD 120 Query: 121 ----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSE 175 + R SAA+Q +P + P + + ++ + ++ ++ G Sbjct: 121 AKKAAKKVQRWNEIAKSAAKQSKRGLIPEVKPVMSFKEAVEYGKSMDMLLIPYEDAKGIA 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +S E + + ++ I IGPEGG+ EE P++LG RILR++TA + ++ Sbjct: 181 HSREVVETVKDKKSLGIYIGPEGGFPEEEVSLAMKAG-AEPVTLGHRILRTETAGMTLLS 239 Query: 236 LVQAIC 241 ++ + Sbjct: 240 ILMFML 245 >gi|332288757|ref|YP_004419609.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis UMN179] gi|330431653|gb|AEC16712.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis UMN179] Length = 210 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 13/214 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95 MK G+ + LF+G + + + I+ + K + ++S + + + R++ Sbjct: 1 MKVGEALELFDGSNHIYPAVITEISKKQITVALQNAIFDDRESPLNIHLGQVISRGERME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + IQKSVE+G+ I P+ + + + + + I+A EQC +P I P Sbjct: 61 FTIQKSVELGVKTITPLWSERCGVKLDAERMEKKIQQWQKIAIAACEQCGRNIIPEIRPL 120 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 L+ D ++ S L V +LIG EGG +E E Sbjct: 121 MKLQDWCAENDGMLKLNLHPRASQSIKQLPP----PPAAGVRLLIGSEGGLSEQEIEQTV 176 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LG R+LR++TA++ A++ +Q GD Sbjct: 177 QQGF-TEVLLGKRVLRTETASLVAISALQICFGD 209 >gi|37523950|ref|NP_927327.1| hypothetical protein gll4381 [Gloeobacter violaceus PCC 7421] gi|35214956|dbj|BAC92322.1| gll4381 [Gloeobacter violaceus PCC 7421] Length = 238 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 15/239 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLF+D + Q HYL VLR+++G + ++ +G W + + G ++R Sbjct: 6 RLFLDPVQFSGDTARLDPAQSHYLRQVLRLRDGASCIVGDGLGNTWQATL--AGDTVRLG 63 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 R+ V + K +R D+++QKS E+G I P++ + Q R Sbjct: 64 -SLLPRTGELPLPVTIACAVPKGDRWDWLLQKSTELGADRIVPLVCERSVVQPDAKRHKR 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + AAEQ + LP + PP L++ +++ C + L Sbjct: 123 WQAIVREAAEQSERAVLPVVEPPALFGMFLRHPARGTRLI-----CTARGVRPPLLNYLP 177 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 + +L GPEGG+ E + SLG RILR++TA + A+ + A WY Sbjct: 178 AAALTLLFGPEGGFSETEVAAATDAGY-QVCSLGSRILRTETAPLLALGWIAA----WY 231 >gi|150008444|ref|YP_001303187.1| 16S ribosomal RNA methyltransferase RsmE [Parabacteroides distasonis ATCC 8503] gi|255014179|ref|ZP_05286305.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. 2_1_7] gi|256841572|ref|ZP_05547079.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262383279|ref|ZP_06076415.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298376306|ref|ZP_06986262.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19] gi|149936868|gb|ABR43565.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256737415|gb|EEU50742.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262294177|gb|EEY82109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298267343|gb|EFI09000.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19] Length = 232 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 10/237 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + I + + ++ + VLR+ EGD I+L +G+ + + IS K Sbjct: 1 MQIFYTP---DIAIKPELPEEEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPKHC 57 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + E + ++ +P K +R+++ ++K+ E+G+ AI + R+++ Sbjct: 58 EVTLLESWKQPDLWNFNLHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIK 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ +SA +Q TLP + T + + + + A G + L+ H Sbjct: 118 PIRLEKILVSAMKQSQKATLPALEGMTDFKKFVAT-PFDGRKFIAHCEEGEKPLLK--HT 174 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N ILIGPEG + EE + F P+SLG LR++TAA+ A + + Sbjct: 175 YQPGENALILIGPEGDFSPEEIKLAQENGF-EPISLGESRLRTETAALVACHTIHVL 230 >gi|206890400|ref|YP_002249400.1| hypothetical protein THEYE_A1605 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206890475|ref|YP_002249450.1| hypothetical protein THEYE_A1657 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742338|gb|ACI21395.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742413|gb|ACI21470.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 236 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 9/235 (3%) Query: 9 RLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL V + S + YL +VLR GD + +FNGK + +KI + Sbjct: 5 RLCVQHCEFFPGKILELSNEDRKYLFNVLRCHPGDTLSIFNGKGKSFHAKIIDL--KTIE 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDR 126 ++ + + + +K ++D +IQK+ E+G+ I P ++ + R Sbjct: 63 ILQEEELHTEDVFSITLCQALLKGEKMDMIIQKATELGVKKIIPFVSDRCIVRHTRKIGR 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 A+EQ +P I L+KN D+ I+F ++ ++ + + H Sbjct: 123 WEKIAKEASEQSHRSIVPEISNVINFSELIKNIDNG--ILFWEKATS--PLIQTISEVNH 178 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 N+ +LIGPEGG+ EE + + SLG RIL+++TA++ ++ALV + Sbjct: 179 DKNIFLLIGPEGGFSQEEVSQAEKMN-IKTASLGKRILKAETASIVSVALVSFLL 232 >gi|327468704|gb|EGF14183.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK330] Length = 250 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ G+ Sbjct: 1 MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLIFDDGMKRLARVLDPGQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK E+G AI V + Sbjct: 59 LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P I L +I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKVDFLAALTDFDRIIVAYEESAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG +E + ++ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAISA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|224538561|ref|ZP_03679100.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus DSM 14838] gi|224519829|gb|EEF88934.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus DSM 14838] Length = 244 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 12/233 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68 + I+T+ + ++ + VLR+ GD I L +GK + ++IS K Sbjct: 16 FYTP---DIQTRAELPEEEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISAATNKRCMVN 72 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E + + +P K +R ++ +K+ E+G + + R+++ +R Sbjct: 73 ILETIYQEPLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTER 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIA 185 + +SA +Q LP + T + + I E G + L+ + Sbjct: 133 ISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFKGQKFIAHCYE--GEKPLLKDV--FR 188 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +LIGPEG + +E + F TP+SLG LR++TAA+ A + Sbjct: 189 KGEDALVLIGPEGDFSEKEVQKAIENGF-TPISLGKSRLRTETAALVACHTLN 240 >gi|315640054|ref|ZP_07895179.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952] gi|315484182|gb|EFU74653.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952] Length = 257 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 101/246 (41%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F++ + + +G+ +H++ V+RM+ G+++ L D ++I V Sbjct: 1 MQRYFLNESYNESVHEYEVTGEPFHHMIRVMRMEAGNHVYLVFANDMSLEAEIREVKADA 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 V + + V K ++L++++QK E+G ++ Sbjct: 61 VMLKPVAIEQLQRELPIKVTIASGFPKGDKLEWIVQKGTELGAAQFLAYPAKTSIVKWDP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-- 175 + +R++ AAEQ P + T LL + ++ A E + Sbjct: 121 KKRQKKQERLQKIAQEAAEQSHRQVCPTVELFATQSDLLAAMETADCVLVAYEESAKKGE 180 Query: 176 --NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++ +A ++ +L GPEGG+ EE E + + LGPRILR++TA + Sbjct: 181 HAQLVQTFRKVAPGQHLMVLFGPEGGFLPEEIERFVAAGAIC-CGLGPRILRTETAPLYV 239 Query: 234 MALVQA 239 + Sbjct: 240 LGAASY 245 >gi|225010758|ref|ZP_03701227.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-3C] gi|225005129|gb|EEG43082.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-3C] Length = 237 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 5/232 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFK 68 + S ++ + VLR K GD I L NGK +IS GK+++ Sbjct: 4 FYAPCFTAEDNSVALSQEESKHATKVLRKKTGDLIHLTNGKGLMAQGEISDTAGKTVQVS 63 Query: 69 VEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + K + +P K +R ++ ++K+ E+G+ +I P+I ++ +R Sbjct: 64 LIEIHLQTPKPYSLDLYVAPTKMNDRYEWFLEKATEIGLSSITPIICDQSERKVIKAERY 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 +SA +Q LP ++P +L+ L ++ E + +L L Sbjct: 124 EKVLLSAMKQSLQAYLPLLHPAISLKKCLDQDISGEKLFAHCEADKMKTALNSLD--LKN 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++I IGPEG + E + P+S G LR++TAA+ A A V A Sbjct: 182 KKLSIFIGPEGDFSLSEIKKAIEKG-CKPVSFGNTRLRTETAALYACASVAA 232 >gi|29349736|ref|NP_813239.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides thetaiotaomicron VPI-5482] gi|253569899|ref|ZP_04847308.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384009|ref|ZP_06993570.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14] gi|29341646|gb|AAO79433.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840280|gb|EES68362.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263613|gb|EFI06476.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14] Length = 232 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 7/226 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKV-EYQSRS 75 I+ + ++ + VLR+ GD I L +GK + ++I+ K + E + Sbjct: 9 IQKNYELPEEEAQHCTRVLRLGIGDEITLTDGKGHFYKAEITVATNKRCLVAIKETIFQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R +++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + + + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPKLNEMTDFDKFIAQ-EFQGQKFIAHCYEGEKPQLKNV--LKAGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEG + EE + F TP+SLG LR++TAA+ A + + Sbjct: 186 GPEGDFSEEEVKKAIECGF-TPISLGKSRLRTETAALVACHTMNLL 230 >gi|6580788|gb|AAF18294.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 256 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 L RL+V+ L ++ Q HYL V+R K G ++LF+ GEWL ++ G K + Sbjct: 12 LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + K+ + + D+ + +PIK R+D++ +K+ E+G+ I PVIT+ T N++ Sbjct: 72 QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R++ + + AAEQC +L + +L LL W + + FADET G E +E L Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLISLLAEWPEDRALFFADET-GGEPMIEALSKRK 190 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 AIL+GPEGG+ +E++ ++++ P+SLGPRILR Sbjct: 191 MA--AAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILR 228 >gi|325290539|ref|YP_004266720.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus glycolicus DSM 8271] gi|324965940|gb|ADY56719.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus glycolicus DSM 8271] Length = 245 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R + + G++ H+L VLR+ G+ IL F+ W I + K Sbjct: 1 MHRFRISS--IDQDYFLIDGEELHHLTRVLRLGPGEEILGFDHSGRLWRGAIREINKEQA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + + + + V I K +++ +IQK E+GM + P+ TR + Sbjct: 59 VCSVIRAEIPETEAKVKVYLIVGLSKGEKMELVIQKGTELGMTGLIPLRTRRSVMKLEGT 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +DR R A +QC + P + P + L + Q + E + + Sbjct: 119 KAEERVDRWRKIAGEAVKQCGRVIQPAVAPVLDWQDLPAYLPADTQWLIPFEGEKTVSLK 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + +A++IGPEGG+ +E +SLG RILR++TAA+AA+ +V Sbjct: 179 ACLKSFDPSLPMALIIGPEGGFEPQEVLWAKEKLGAKSISLGSRILRAETAAIAALTIVL 238 Query: 239 AICGD 243 A GD Sbjct: 239 AFYGD 243 >gi|224500510|ref|ZP_03668859.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes Finland 1988] Length = 255 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTSELENDNDTLAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 V++ ++ K ++L+ +IQKS E+G R V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ + H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG + + L LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEK-ELLLLEEANAKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|270293092|ref|ZP_06199303.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143] gi|270279071|gb|EFA24917.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143] Length = 251 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 12/248 (4%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + +++++ FV + + ++ V+R+KEGD + L + L+++ V Sbjct: 1 MEANMQQYFVKGSPISPVTIE-DKETSKHMFQVMRLKEGDEVTLVFEDGIKRLARVLNVE 59 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 +E + + V K ++L+++ QK E+G I V Sbjct: 60 ARQFELLEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWD 119 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + ++++ + AAEQ +P I L D IV A E E Sbjct: 120 GKKLGKKVEKLEKIALGAAEQSKRNLVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEG 179 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L+ + +A + + GPEGG E E+ + V LGPRILR++TA + Sbjct: 180 EASALLQAVTGLATGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLY 238 Query: 233 AMALVQAI 240 A++ + + Sbjct: 239 ALSALSVL 246 >gi|319796621|ref|YP_004158261.1| hypothetical protein Varpa_5998 [Variovorax paradoxus EPS] gi|315599084|gb|ADU40150.1| protein of unknown function DUF558 [Variovorax paradoxus EPS] Length = 246 Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 16/242 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R PL + VLRM+ GD + LF+G GE+ + I +G+S Sbjct: 1 MPRFHCSVPLSPGAAFALPPGAARH-VQVLRMQPGDALTLFDGAGGEYEATIERMGRSDV 59 Query: 67 FKVEYQSRSQTKQSD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 +++ V R+D++++K+ E+G+ +I+P+ T + + Sbjct: 60 SVTVGVHHPVEREATRAVHLAVGMPANERMDWLVEKATELGVASIQPLATAHGVLRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE----FLLKNWDHNCQIVFADETCGS 174 I+A EQC +P I+P + ++ D F Sbjct: 120 RAEKKRAHWEAIAIAACEQCGRNRVPVIHPVRSFSGNSGWIDAQQDEGATARFVLSLAEG 179 Query: 175 ENSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +E A +V +L GPEGG + E++ + F P++LG R+LR++TAA+ Sbjct: 180 TQGIEAASAAHAPDNRDVRVLSGPEGGLSAAEEQEAIARGFA-PVTLGLRVLRAETAALV 238 Query: 233 AM 234 A+ Sbjct: 239 AL 240 >gi|330813642|ref|YP_004357881.1| ribosomal RNA small subunit methyltransferase E [Candidatus Pelagibacter sp. IMCC9063] gi|327486737|gb|AEA81142.1| ribosomal RNA small subunit methyltransferase E [Candidatus Pelagibacter sp. IMCC9063] Length = 238 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 6/239 (2%) Query: 7 LK---RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVG 62 ++ R+F+ L + + DQ HY+++V+R+K GD +LLFNG DGE+L K++ Sbjct: 1 MQKKIRIFLSERLEENNKIELGKDQSHYISNVMRLKSGDELLLFNGIDGEFLGKVAGSEK 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K +V + R Q+K S++ F P+K RLD++IQK E+G+ + PVI+ +T + Sbjct: 61 KQTIIQVHAKQRDQSKPSNISLAFCPLKGQRLDFLIQKCTEVGLKSFIPVISDHTIVRNV 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N +R++ I ++EQ D L +P + LE L ++F D + + + + + Sbjct: 121 NENRLKKIIIESSEQSDQLHIPQVLSALNLEEFLHFLKKEDVVLFGDISSKNNDLTQLIE 180 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 N + IGPEG + +E+E + SLG ILRS+TAA+A + L+ + Sbjct: 181 D--KSKNYILFIGPEGDFSPKEREIILKNVKFKSFSLGKNILRSETAAIAGLVLLNFLL 237 >gi|326404264|ref|YP_004284346.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301] gi|325051126|dbj|BAJ81464.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301] Length = 226 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRS 75 S Q HYL V+R + GD +L+FN GE+ + I + + V ++R+ Sbjct: 2 SPGATLATSAAQAHYLGAVMRRRAGDRLLVFNAGSGEFAATIGALDRRAATLVLGARTRA 61 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135 + D F+P++ + + +++K+ E+G+ + PV+T TQ DR+ AA Sbjct: 62 PEPEPDCWLCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARLRADRLAAIATEAA 121 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 EQ + LT+P I P L L ++ + ++ A ++ L + A+L+G Sbjct: 122 EQSERLTIPDIAEPAPLAAFLASFPPSRRLFVA----AERHAAPPLSPADPLQPHALLVG 177 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 PEGG EE + + FV+P++LGPRILR++TAA+A +A + A Sbjct: 178 PEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLARLLA 221 >gi|88802426|ref|ZP_01117953.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P] gi|88781284|gb|EAR12462.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P] Length = 235 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 7 LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++ LF + + I T + + ++ VLR GD + + NGK + +I + K Sbjct: 1 MQ-LFYNSEIAINTTEITFDKIESKHIVRVLRKTTGDILKITNGKGYLFDVEICFANDKK 59 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K+ + + + + +P K +R+++ ++K+ E+G+ I P+I ++ + Sbjct: 60 CTAKIIKAEEKPKPWNYSLHIAIAPTKNNDRIEWFLEKATEIGIDEITPIICSNSERRYV 119 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +DR +A +Q TLP I P +K D + I A +N ++ + Sbjct: 120 KIDRFEKIIQAAMKQSLKCTLPKINEPIKFNDFIKQ-DFDGTICIAHCEDQEKNFIKSV- 177 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + ILIGPEG + +E F P+SLG LR++TA + A+ +V I Sbjct: 178 -VQTSEKITILIGPEGDFSLDEIAKALDKKF-KPISLGKSRLRTETAGIVAVNIVSFI 233 >gi|332358563|gb|EGJ36387.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1056] Length = 250 Score = 224 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 14/245 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 VE + + V K ++L+++ QK+ E+G AI V + Sbjct: 59 LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SE 175 +++ AAEQ +P + L IV A E S Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFEKKSDFLNQLAQFGTIVVAYEESAKAGESA 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG EE V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAI 240 V + Sbjct: 238 AVSVL 242 >gi|299783149|gb|ADJ41147.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 244 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDXATAEV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + +V K + + ++QK+ E+G I + + Q Sbjct: 61 KVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 ++R++ +AAEQ +P + L+ LL + + ++V +E+ Sbjct: 121 QGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGERAA 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++ + GPEGG E ET+ + V LGPRILR++TA + MA Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239 Query: 237 VQAIC 241 V Sbjct: 240 VSYHF 244 >gi|255007829|ref|ZP_05279955.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis 3_1_12] gi|313145535|ref|ZP_07807728.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134302|gb|EFR51662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 229 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I+T + ++ + VLR+ GD I L +GK + ++IS K + E + Sbjct: 9 IQTNAELPEEEAQHCVRVLRLTAGDEITLTDGKGNFYRAEISAATNKRCLVNIKETIHQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R +++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWEGHLHIAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T ++ D + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPRLNEMTDFNSFIEK-DFSGQKFIAHCYEGEKPLLKDV--LKKGEDTLVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + F+ P+SLG LR++TAA+ A + Sbjct: 186 GPEGDFSEEEVKKAIEKGFI-PISLGKSRLRTETAALVACHTMN 228 >gi|126660243|ref|ZP_01731359.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110] gi|126618482|gb|EAZ89235.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110] Length = 241 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 6/239 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R+ ++ + +Q HYL +VLR+KE ++ +G++ +++KI+ I Sbjct: 4 RIIIEPTQKQGDMITLTPEQKHYLKNVLRLKEDSQFIVVDGQNNTYIAKINDDNGQI--- 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 +E + +V + + K D +I+ E+G+ I PVI++ T + + + ++R Sbjct: 61 IEQLNEQTELPINVTLMIALPKGKGFDEVIRSCTELGINTIIPVISQRTLLKPSSHKLER 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R A EQ + +P I P + LK Q + T L Sbjct: 121 WRKIVKEATEQSERQLVPNILEPISFSEALKKVKQTNQNYYICVTRKKAKHLLTYLLETT 180 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 ++ I G EGG+ +E + F+ P++LGPRILR+ TA + ++LV ++ ++ Sbjct: 181 TNSITIATGCEGGWTEKEINEAINSGFI-PVTLGPRILRAVTAPLVTLSLVASVTEKYH 238 >gi|168334726|ref|ZP_02692858.1| hypothetical protein Epulo_06900 [Epulopiscium sp. 'N.t. morphotype B'] Length = 256 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 10/239 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + + FVD +H++ +V+R K GD +L+ + ++G + ++ + + I Sbjct: 12 MPKYFVDKSNIKDATIVIEDRNFHHIKNVMRAKIGDQLLVGDKENGMYKCFVAEISANFI 71 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 + + T+ + +F+P IK ++++++IQK+VE+G+ I P+ T++ Sbjct: 72 TANIVEVFAADTEPAVDIVLFAPLIKGDKMEWVIQKAVEIGIAKIIPIYTQHCVVKLESE 131 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R SAA+Q + P ++ D + + Sbjct: 132 KKIASKVERWNKIAESAAKQSGRGITVAVAEPMKFADAMEFADAALDAIAIPYEKEDTQT 191 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +K+ ++ I +GPEGG+ +EE ++LG RILRS+TA++ A AL Sbjct: 192 FKKMLRENQFTSLGIFVGPEGGFAAEEIAIAEKFG-AMVVTLGKRILRSETASIVATAL 249 >gi|330815513|ref|YP_004359218.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3] gi|327367906|gb|AEA59262.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3] Length = 253 Score = 224 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 17/236 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 S + R FVD PL + + + VLR++ GD + LF+G G++ +++ +GK Sbjct: 7 SAVPRFFVDVPLADQASIVLPAEVARH-VQVLRLEPGDALTLFDGSGGQYRAELVEIGKR 65 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + +++R + +++D++I+K+VE+G+ + P+ T Sbjct: 66 TAVARTLAFEARELETPYRITLAQGIAGGDKMDWLIEKAVELGVAGVAPLSTSRGVVRLS 125 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETC 172 + + + +A EQC +P + + L + +++ + Sbjct: 126 GERADKRVAHWQGVVRAACEQCGRNRVPAVAAVSDYAAWLAALPSPVEGEVRLMLSPRAS 185 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +L A + +LIGPEGG E++ F + LG R+LR++T Sbjct: 186 ---IAFAELPKQAPTGEIRLLIGPEGGLSPAEEDAARECGFQAIV-LGARVLRTET 237 >gi|222112634|ref|YP_002554898.1| 16S ribosomal RNA methyltransferase rsme [Acidovorax ebreus TPSY] gi|221732078|gb|ACM34898.1| protein of unknown function DUF558 [Acidovorax ebreus TPSY] Length = 242 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 12/235 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R PL Q + VLR++ GD + LFNG+ GEW + ++++G+S + Sbjct: 1 MPRFHCPLPLAADAQLTLPPTAARH-VQVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDV 59 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + +V S + + + V + R+D++++K+ E+G +I+P+ + + Sbjct: 60 QVQVGSHSAVEREAARAVHLVVGMPANERMDWLVEKATELGAASIQPIAAARSVLKLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 + ++A EQC +P ++ P +L L+ + A S Sbjct: 120 RAAKRQQHWQAIAVAACEQCGRNRVPSVHAPLSLADWLRQPPADALAPDAARLLLSLRSG 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 S A A V +L GPEGG ++E++ + F P SLG R+LR++TA+V Sbjct: 180 SRPLREAAAEAGAVWVLHGPEGGLTAQEEDAALAQGFA-PASLGARVLRAETASV 233 >gi|307707102|ref|ZP_07643899.1| RNA methyltransferase family protein [Streptococcus mitis SK321] gi|307617628|gb|EFN96798.1| RNA methyltransferase family protein [Streptococcus mitis SK321] Length = 247 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGVKRLARVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQILAFPSDWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIQLFENKADFLAQLDQFDSIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGGKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|218129752|ref|ZP_03458556.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697] gi|317475901|ref|ZP_07935157.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] gi|217987862|gb|EEC54187.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697] gi|316907934|gb|EFV29632.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA] Length = 232 Score = 224 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I++ + ++ + VLR++ GD + L +GK + ++IS ++ QT Sbjct: 9 IQSHAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNLLETIPQT 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERIAKILISA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + N + A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPQLNEMTDFNKFISQ-PFNGRKFIAHCYEGDKPLLKDI--VRKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + F P+SLG LR++TAA+ A ++ Sbjct: 186 GPEGDFSEEEVKKAIENGF-EPISLGRSRLRTETAALVACHILN 228 >gi|308272138|emb|CBX28745.1| hypothetical protein N47_L13430 [uncultured Desulfobacterium sp.] Length = 259 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ ++D G ++ +VLR+K GD+I LF+ ++ ++I V + Sbjct: 1 MRLFYIDQSEIASQNPAIKGSDARHIINVLRLKPGDHIELFDESGIKYKARIVAVSSARV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +QT +S ++ I + +K ++D +I++ E+G+ P I+ + + Sbjct: 61 EVSVVGQSNQTVESFLEIIVAQSFLKEAKMDNLIRQLTELGITKWIPFISERSVSRPDDK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + AA+QC I + + LL++ + E + + Sbjct: 121 RLLNRSKRWESIAKEAAKQCKRAKTTIIEKTVSFKELLESKQEFDLKIIFWENEKNLLDI 180 Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L A I + I++GPEGG+ E E F+T LGPRILR++TA+V+A L Sbjct: 181 KNLTATHQKDINKILIILGPEGGFTISEIEKAKESGFLTA-GLGPRILRAETASVSACTL 239 Query: 237 VQAICGD 243 +Q + GD Sbjct: 240 IQFLFGD 246 >gi|322386664|ref|ZP_08060289.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269337|gb|EFX52272.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC 51100] Length = 247 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 20/249 (8%) Query: 7 LKRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ F+ PL +K D ++ V+R+KEGD + L + L+ + Sbjct: 1 MQQYFIKGNPQSPLVVK-----DKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLAHVLEPS 55 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 + +E + + V K ++L+++ QK+ E+G AI V Sbjct: 56 QQSLEILEELADNTELPVQVTIASGFPKGDKLEFITQKATELGANAIWAFPADWSVAKWD 115 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++ +++ AAEQ +P + T L +IV A E E Sbjct: 116 SKKLAKKSEKLEKIAQGAAEQSKRNMIPEVRLFDTKADFLAVLADFDRIVVAYEESAKEG 175 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ++ + + + + GPEGG +E V+ LGPRILR++TA + Sbjct: 176 ETAALVQAVKGLDKGDKLLFIFGPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLY 234 Query: 233 AMALVQAIC 241 A+ V + Sbjct: 235 ALTAVSVML 243 >gi|86134044|ref|ZP_01052626.1| protein of unknown function (DUF558) [Polaribacter sp. MED152] gi|85820907|gb|EAQ42054.1| protein of unknown function (DUF558) [Polaribacter sp. MED152] Length = 235 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 12/239 (5%) Query: 7 LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++ LF + L +T Q + ++ VLR KEGD + + NGK + ++I++ K Sbjct: 1 MQ-LFYNAELIKETTQIIFDKIESRHIVKVLRKKEGDILKITNGKSYLFDAEITFASDKK 59 Query: 65 IRFKVEYQSRS-QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 +++ + + + +P K +R ++ ++K+ E+G+ I P+I ++ Sbjct: 60 CIVQIKSATEKLKPWPYYLHIAIAPTKNNDRTEWFLEKATEIGIDEITPIICSNSERRVV 119 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R SA +Q TLP + ++ + + E +NSL+ + Sbjct: 120 KLERFEKIIQSAMKQSLKFTLPKLNKAIKFNEFIQQDIPGLKCIAHCEDQ-EKNSLKLV- 177 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA---MALVQ 238 + + ILIGPEG + +E + + F TP+SLG LR++TAA+ A ++LVQ Sbjct: 178 -AKNTDKITILIGPEGDFSVDEIKKALNANF-TPISLGESRLRTETAALVAVNTISLVQ 234 >gi|285018976|ref|YP_003376687.1| hypothetical protein XALc_2213 [Xanthomonas albilineans GPE PC73] gi|283474194|emb|CBA16695.1| hypothetical protein XALc_2213 [Xanthomonas albilineans] Length = 243 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R VD PL + + +L VLR++EGD +LFNG ++ +++ GK Sbjct: 2 RLTRCHVDLPLHTGAEVALPEEVAGHLLRVLRLREGDRCVLFNGNGCDYDAELLPTGKRG 61 Query: 66 RFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 +R +S + + + ++D ++QK+ E+G+ AI P+ T+ Sbjct: 62 ASARIGVARPVDNESSLAITLLQGVARGEKMDLILQKATELGVSAIVPIWAERTEVKLDA 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 T + R+ +SA EQ +P + P + D C+++ E Sbjct: 122 QRTDKRVAHWRSVVVSACEQSGRARVPSLSAPLALADAARAAADSPCRLILDP---QGEQ 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L L I + + I IGPEGG+ ++ TL S F+ L LGPRILR++TA++AA+A Sbjct: 179 RLRTLDFIGNA--ITIAIGPEGGWSPRDRTTLESAGFL-GLRLGPRILRTETASLAAIAA 235 Query: 237 VQAICGD 243 +QA GD Sbjct: 236 LQAHGGD 242 >gi|319937482|ref|ZP_08011887.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1] gi|319807322|gb|EFW03931.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1] Length = 244 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 108/240 (45%), Gaps = 9/240 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D + + + ++ V+R GD ++ ++ +I + + Sbjct: 1 MQRYFIDEKCLKDEEIRIDAYNHKHMQRVMRYHNGDQVICILPSAKTYIYEIIDIETGLL 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +VE + +V I+ K+++ ++++QK+ E+G+ I P +++ + + Sbjct: 61 KRVEELHENHELDVNVTLIYGLPKSDKFEWVLQKATELGVKRIVPFLSKRSIIKTDAKTF 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +R + A+EQ +P + T++ L + + +V +E Sbjct: 121 SKKEERYQRILKEASEQSYRQMIPELTQLITIKD-LSQYLSDINLVAYEEASKRGEECCF 179 Query: 181 LHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A+ + I++GPEGG+ E E + +L + SLG RILRS+TA + ++++ Sbjct: 180 ASALKQNYQTLTIIVGPEGGFDQSEIEQMKALG-IQECSLGKRILRSETAPLYMLSVIGY 238 >gi|299535791|ref|ZP_07049112.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1] gi|298728991|gb|EFI69545.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1] Length = 264 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 19/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 ++R F++ + + SG+ ++ V+RMK+GDNI++ ++ ++ I + G + Sbjct: 20 MQRYFIETAI---ENARISGEDARHIERVMRMKQGDNIVVV-AQNTAYICTIEGFEGDEV 75 Query: 66 RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + Q+ S V K ++L+ + QK+ E+GM A+ P + + Sbjct: 76 VIEATGQTIPSPELPIQVTVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDKK 135 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 +R++ AAEQ +P ++ P + + L++ D + ADE Sbjct: 136 KGAKKQERLQKIAKEAAEQAHRTHIPTVFEPISFKQLVQQIDQFDAVFIADEEDAKAEKR 195 Query: 178 ---LEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 EKL + ++ I+ GPEGG +E E L T +SLGPRILR++TA + Sbjct: 196 TRFAEKLKNVYDKKSKSMLIIFGPEGGISRQESEALLQAGAQT-MSLGPRILRAETAPLY 254 Query: 233 AMALVQAIC 241 A++ + Sbjct: 255 ALSAISYEF 263 >gi|221069844|ref|ZP_03545949.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1] gi|220714867|gb|EED70235.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1] Length = 246 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 121/249 (48%), Gaps = 24/249 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60 + R PL + + + VLR + GD I LF G+ GE+ + I+ Sbjct: 1 MPRYHCPIPLHLGDELDLPAGAARH-VQVLRHQPGDIITLFEGQTGNGFTGGEFQATITR 59 Query: 61 VGKS-IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 +G+S + +V+ S ++ + + V + R+D++++K+ E+G+ +I+PV+ + Sbjct: 60 MGRSDVGVRVDSHSPAEREAARAVHLVVGMPANERMDWLVEKATELGVASIQPVMAARSV 119 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFA 168 ++R ++ +SA EQC +P I+ P +L L++ ++V + Sbjct: 120 LKLKGDRADKKIERWQSIAVSACEQCGRNQVPVIHAPLSLADWLRSKQAPAADAARLVLS 179 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +A A V +L GPEGG ++E++ + P SLG R+LR++T Sbjct: 180 LREGNQPLRIAAGNAHA----VWVLHGPEGGLTAQEEDWALEQGW-KPASLGSRVLRAET 234 Query: 229 AAVAAMALV 237 A+VA ++L+ Sbjct: 235 ASVATLSLL 243 >gi|329725434|gb|EGG61917.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU144] gi|329735250|gb|EGG71542.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU045] gi|329737441|gb|EGG73695.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis VCU028] Length = 245 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 14/227 (6%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQ 83 + YH++ +V+R KEG NI++ + + KI + +SI K VE Q + ++ Sbjct: 16 KEDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQSIEIKLVEKQQINTELPQNIT 75 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQ 137 IK ++ ++MIQK+ EMG V + + R + AAEQ Sbjct: 76 ICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQ 135 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAIL 193 LT+P I + L+ + ++ A E L + + V I+ Sbjct: 136 SYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHGELSQFKQTIKQFKTQDRVLII 195 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEGG E + T + LGPRILR++TA + A++ V Sbjct: 196 FGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYALSAVSYE 240 >gi|313203702|ref|YP_004042359.1| hypothetical protein Palpr_1227 [Paludibacter propionicigenes WB4] gi|312443018|gb|ADQ79374.1| protein of unknown function DUF558 [Paludibacter propionicigenes WB4] Length = 233 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 10/228 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 +V L ++ + VLRM+ GD I + +G G + + IS K F+ Sbjct: 4 FYVPN-LSAG--YVLPEEESKHAVKVLRMQVGDAISVVDGVGGFYNALISNPHPKHCEFE 60 Query: 69 VEYQSRSQ-TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ + + +P K RL++ I+K+ E+G+ I P+I R+++ +R Sbjct: 61 IKKTILEFGKRDYKIHIAIAPTKNIERLEWFIEKATEIGIDQITPIICRFSERKIVKAER 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + +SAA+Q P + P T + L+ + + + + C E+ + I Sbjct: 121 LEKIIVSAAKQSLKAYFPILNPLCTFDELINKHNASQKFIAH---CYEEDKKLLQNEIQK 177 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +V ILIGPEG + EE ++ F+ P+SLG LR++TA V A Sbjct: 178 SSDVLILIGPEGDFSKEEVQSAILHDFI-PVSLGESRLRTETAGVVAC 224 >gi|114328853|ref|YP_746009.1| 16S ribosomal RNA methyltransferase RsmE [Granulibacter bethesdensis CGDNIH1] gi|114317027|gb|ABI63087.1| surface protein [Granulibacter bethesdensis CGDNIH1] Length = 250 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RL +D L + HYL V+R GD + LFN DGEW + I + + Sbjct: 16 RLHMDHALRGGEHLTLDTARAHYLGTVMRRGVGDALSLFNATDGEWRAVIERIDRKGATL 75 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q RS + +F+ +K + ++QK+ E+G+ + PV+T T N R+ Sbjct: 76 SLTEQIRSPVPEEGPWLVFALLKRTNTELVVQKATELGVSRLIPVMTTRTNAERINAARL 135 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + AAEQC+ L++P + P L LL++W + ++ A E + HA Sbjct: 136 EAIAVEAAEQCERLSIPVLQAPQPLPALLRDWPEDRRLYAAIERS------DVAHARGVA 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 A+L GPEGG+ +E L S V P+SLG +LR++TAA+A +AL+ A Sbjct: 190 GPSALLTGPEGGFAEQELVMLRSHAHVIPVSLGRTVLRAETAAIAGLALLTA 241 >gi|16803510|ref|NP_464995.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes EGD-e] gi|47095422|ref|ZP_00233032.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 1/2a F6854] gi|224501590|ref|ZP_03669897.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes FSL R2-561] gi|254829771|ref|ZP_05234426.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes 10403S] gi|254898364|ref|ZP_05258288.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes J0161] gi|254912144|ref|ZP_05262156.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936472|ref|ZP_05268169.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|5689042|dbj|BAA82792.1| orf29 [Listeria monocytogenes] gi|16410899|emb|CAC99548.1| lmo1470 [Listeria monocytogenes EGD-e] gi|47016243|gb|EAL07166.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes str. 1/2a F6854] gi|258609065|gb|EEW21673.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590116|gb|EFF98450.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 255 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 15/252 (5%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R FV L +G+ +H++A V+RMKE D + + ++ I+ + + Sbjct: 1 MQRYFVTSELENDNDTLAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 V++ ++ K ++L+ +IQKS E+G R V+ Sbjct: 61 VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R++ AAEQ +P ++ + + L+ H ++ A E E Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFGHVHYDFVIAAYEESAREGE 180 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L ++ +V + GPEGG + + L LGPRILR++TA + Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEK-ELLLLEEANAKLAGLGPRILRTETAPLYV 239 Query: 234 MALVQAICGDWY 245 ++ D Y Sbjct: 240 LSAASFYF-DLY 250 >gi|319945702|ref|ZP_08019953.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC 700641] gi|319748062|gb|EFW00305.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC 700641] Length = 249 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGLASSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEARQL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+++ QK E+G I V + Sbjct: 60 EIIEELTDNVELPIHVAIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D +IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNFVPSITLFEKKADFLAQLDQFDRIVVAYEESAKEGESAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + + V + GPEGG E E+ + LGPRILR++TA + A++ Sbjct: 180 LVQAVSGLEKGSKVLFIFGPEGGLSPAEIESFEAKGAALA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSVVT 243 >gi|306829961|ref|ZP_07463148.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249] gi|304427972|gb|EFM31065.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249] Length = 247 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KEGD I L + L+++ V Sbjct: 1 MQQYFVKGNATSPVTIE-DKETSKHMFQVMRLKEGDEITLVFDDGIKRLARVLDVETRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELADNVELPVQVTTASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++++ + AAEQ +P + L +D IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSVKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAA 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + V + GPEGG E ++ + V LGPRILR++TA + A++ Sbjct: 180 LIQAVSGLEKGSKVLFIFGPEGGLSPAEIKSFEAKGAVLA-GLGPRILRAETAPLYAVSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|124007911|ref|ZP_01692612.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123986673|gb|EAY26463.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 238 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63 L +LF P Q S ++ + VLRMK+ D + L +GK +L+KI+ K Sbjct: 3 KLSQLFY-SPQTTHQQAILSEEESRHCVKVLRMKKNDELHLTDGKGNLFLAKIAEPHHKK 61 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + V ++ + +P K +R+++ ++KSVE G+ I V ++ Sbjct: 62 CVLDIVRTIEQTPAPLYHIHVAIAPTKNIDRIEWFVEKSVEFGIQQISFVQCNRSERKQV 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R++ +SA +Q +P I + + + N + A G L+ + Sbjct: 122 KLPRIQKIALSAMKQSLKFFMPQINEMVSFKSFMANLTPDETRYVAHLNEGERVFLKDVA 181 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ILIGPEG + +E + F +SLG LR++TA +AA L+ Sbjct: 182 Q--KHQKYCILIGPEGDFTPDEVTLALNNEF-KAVSLGNSRLRTETAGIAACHLLN 234 >gi|260662210|ref|ZP_05863106.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN] gi|260553593|gb|EEX26485.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN] Length = 249 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + +V K + + ++QK+ E+G I + + Q Sbjct: 61 KVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 ++R++ +AAEQ +P + L+ LL + + ++V +E+ Sbjct: 121 QGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTIFSFDHRVVAWEESAKQGERAA 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++ + GPEGG E ET+ + V LGPRILR++TA + MA Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239 Query: 237 VQAIC 241 V Sbjct: 240 VSYHF 244 >gi|329114600|ref|ZP_08243359.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter pomorum DM001] gi|326696080|gb|EGE47762.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter pomorum DM001] Length = 257 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 9/242 (3%) Query: 3 IHSHLKRLFVDFPLCIKT-----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57 +HL RL+ + P + + DQ YL VLR K GD++ +FN K GEWL++ Sbjct: 6 ATAHLPRLY-NAPETLGDAQTGLTLPIAPDQARYLGTVLRKKTGDHVRIFNAKSGEWLAR 64 Query: 58 ISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 I+ + K F +E+Q RS T Q + F+ +K + D ++ E+G+ P+IT Sbjct: 65 ITEIRKDKGFFALEHQLRSPTPQPALVLAFALLKRDATDLALRMGTELGVTHFVPLITER 124 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 T N DR+ A EQC+ +P I P + L +W ++ A E + Sbjct: 125 TNTHRINPDRLHAIATEATEQCERFDVPHIESPQSFTDFLASWPQEHRLFAAIERGENRA 184 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L AH + L+GPEGG E + + +TP+SLGP +LR+DTA A +A Sbjct: 185 IHTPALLPDAHAGD-GFLVGPEGGLSDRECQMMLKYSCITPISLGPLVLRADTAVAAGLA 243 Query: 236 LV 237 L+ Sbjct: 244 LI 245 >gi|227824690|ref|ZP_03989522.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905189|gb|EEH91107.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 247 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 12/228 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF- 67 R F+ P + +G H++ HVLRMK GD + + + + KI+ K Sbjct: 6 RFFLGKPFA--DTLEVTGQDAHHMGHVLRMKVGDEVQIVSLDQIAAVMKITAFSKDAVTL 63 Query: 68 -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 V + V K ++++++IQK++E+G+ I+PV + T Sbjct: 64 ETVRILEENHEPTVRVTLYQGLPKQDKMEWIIQKAIELGISEIQPVSMAHCVVRLDEGKT 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R + +AA+Q +P I P + L + + + +++ A E + Sbjct: 124 AKKLERWQKIAEAAAKQSKRDIVPVIKAPLPVALALTSCEADLKLM-AYEVEEEGSLRRT 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L ++A+LIGPEGG +E + + + +SLGPRILR++T Sbjct: 183 LQKTPDAKSIALLIGPEGGISGDEFDLAAAHDW-QSVSLGPRILRTET 229 >gi|213963907|ref|ZP_03392153.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno] gi|213953416|gb|EEB64752.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno] Length = 241 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 9/239 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + T ++ ++ VLR K GD + + NGK + +++ + K Sbjct: 3 IQLFYHPALQLDSTNCFFDKEESQHIVKVLRKKVGDVLHITNGKGQLFEAQLDFASPKQC 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + + + + +P K R ++ ++K+ E+G+ I P+I +++ T + Sbjct: 63 EVRILKCTTQSPRSYYLHLVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKV 122 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKL 181 +R +SA +Q LP + P K + I E E L Sbjct: 123 ERFEKILLSAMKQSLQCYLPKLNAPIASSQFFKAMKTDTSAKYIAHCYEN---EKRLFSR 179 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +LIGPEG + + E T FV P+SLG LR++TAAV A V + Sbjct: 180 TLTPFPERITVLIGPEGDFSTTELNTALQQAFV-PISLGDTRLRTETAAVVACHTVAVL 237 >gi|121596395|ref|YP_988291.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax sp. JS42] gi|120608475|gb|ABM44215.1| protein of unknown function DUF558 [Acidovorax sp. JS42] Length = 242 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R PL + VLR++ GD + LFNG+ GEW + ++++G+S + Sbjct: 1 MPRFHCPLPLAADALLTLPPTAARH-VQVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDV 59 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + +V S + + + V + R+D++++K+ E+G +I+P+ + + Sbjct: 60 QVQVGSHSAVEREAARAVHLVVGMPANERMDWLVEKATELGAASIQPIAAARSVLKLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 + ++A EQC +P ++ P +L L+ + A S Sbjct: 120 RAAKRQQHWQAIAVAACEQCGRNRVPSVHAPLSLADWLRQPPADALAPDAARLLLSLRSG 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 S A A V +L GPEGG ++E++ + F P SLG R+LR++TA+V Sbjct: 180 SRPLREAAAQGGAVWVLHGPEGGLTAQEEDAALAQGFA-PASLGARVLRAETASV 233 >gi|319778530|ref|YP_004129443.1| Ribosomal RNA small subunit methyltransferase E [Taylorella equigenitalis MCE9] gi|317108554|gb|ADU91300.1| Ribosomal RNA small subunit methyltransferase E [Taylorella equigenitalis MCE9] Length = 244 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 11/240 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F PL I + K D ++ LR+KEG I LF+G + E+ IS+ F Sbjct: 4 PRFFYTLPLEIGSTIKLPKDITNHAGRSLRLKEGTKISLFSGDNTEYHGTISFNSSDAFF 63 Query: 68 KVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 VE + S+ + +++D++I+K+VE+G+ P+I + + + Sbjct: 64 NVEDIKEISRELPLRIGLAQGLATGDKMDFIIEKAVEIGVSDFYPIIAKRSVLKLNNEKF 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + ISA+EQC + ++ P + ++N + ++ + +++ Sbjct: 124 EKKLAHWSRIIISASEQCGRNKIMQLHQPQDINEFIQNTSDSLYLIAHPDA---QSNFLG 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N +LIGPEGG+ S E E L +SLG R+LR++TA + ++ + AI Sbjct: 181 TAETEDFDNSIVLIGPEGGWDSTELEKLRKEN-SRLISLGQRVLRTETAGIVTVSYLTAI 239 >gi|167752853|ref|ZP_02424980.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216] gi|167659922|gb|EDS04052.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216] Length = 253 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 7/237 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + P + + S ++ + VLRM G+ + + +G+ + +I K Sbjct: 1 MQLFY--APDIVPPEYTLSEEESKHCIRVLRMACGEELHITDGRGNLYRCEIVDDNPKRC 58 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 R +V + S + +P K +R ++ ++K+ E+G+ I P+ T +++ Sbjct: 59 RVRVRDTNSEFGKLPYRLTMAVAPTKNNDRFEWFLEKATEIGVAEIIPLATEHSERRTLK 118 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLH 182 +R +A +Q P ++ T L ++K +D I D + H Sbjct: 119 PERENKVITAAVKQSLKAYHPRLHEITPLRQVIKQPFDGQKFIAHCDAPRSALGKAFLPH 178 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +V +LIGPEG + EE + F ++LG + LR++TAAV A ALV A Sbjct: 179 ILHKGGDVLVLIGPEGDFSPEEIDLAVRGGF-REITLGSQRLRTETAAVMATALVAA 234 >gi|282877983|ref|ZP_06286792.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310] gi|281299984|gb|EFA92344.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310] Length = 241 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 106/236 (44%), Gaps = 7/236 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF- 67 R F T+ ++ + VLR+K GD I L +G+ + + ++ Sbjct: 5 RYFYVPNAAQATELPL--EEARHAVSVLRLKAGDEIFLMDGEGSFYQANVTLAATKHCMY 62 Query: 68 -KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 V+ + +T + V +P K +R+++MI+K E+G I + R+++ +D Sbjct: 63 DIVKALPQQKTWKGHVHLAIAPTKMMDRMEWMIEKMTEVGFDEITFLDCRFSERKKLRID 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAI 184 R+ I+A +Q P ++P + + + + + I ++ L ++ Sbjct: 123 RLEKIVIAAMKQSRKAWKPVVHPIMSFQDFVNQQREGGLYIAHCYTEIARKDFLSEIQQA 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 ++ +L+GPEG + +E + F + +SLG LR++TA + ++ + Q + Sbjct: 183 NDQQDITMLVGPEGDFSMDEVKQALEKGF-SSVSLGQNRLRTETAGLVSIVMSQVV 237 >gi|291166400|gb|EFE28446.1| RNA methyltransferase, RsmE family [Filifactor alocis ATCC 35896] Length = 247 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R +VD P K ++ ++ VLR GD + +F+ GE+++KIS + K Sbjct: 1 MDRFYVDHPF--KEHAFLDDIEEIKHITKVLRFSVGDYVEIFDSVQGEYIAKISAIDSKR 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 I F ++ + V K +R++++IQKS E+G+ I PV + + + Sbjct: 59 IYFDIQKELPKSKSNIFVTLYQGIAKGHRMEFLIQKSTELGVDTIIPVRFQRSVAKLEKD 118 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADET------CG 173 + R + A++QC + + L ++ + F +E Sbjct: 119 DKKIQRWNKICLEASKQCKRNKISCVKNAIDFSELSSELLKNDLNLFFYEEEHNLTLKSY 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + L ++ + + ++ I++GPEGG +EK+ L S + LSLG RILR++T +VA Sbjct: 179 LKEQLNRIKVLQNGVSIGIIVGPEGGITEQEKDILVSEG-IPSLSLGKRILRTETVSVAV 237 Query: 234 MALVQAIC 241 ++++ Sbjct: 238 LSMLHYEL 245 >gi|260892511|ref|YP_003238608.1| protein of unknown function DUF558 [Ammonifex degensii KC4] gi|260864652|gb|ACX51758.1| protein of unknown function DUF558 [Ammonifex degensii KC4] Length = 251 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 10/230 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++R+FV +T+ ++ HYL VLR++ GD + + +G+ I + + Sbjct: 1 MRRVFVLPEELGETKVILPPEESHYLLSVLRLRAGDRVAVHDGEGRARAGIILRESRGRV 60 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 ++ EY S V K ++D ++QK+ E+G+ I P++T + Sbjct: 61 EVELGEYLSLPPEPPVFVTLFQGIPKGEKMDLVVQKATELGVSRIVPLLTERVVVQWDGE 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + A QC T+P I T+L L+ + + E + + Sbjct: 121 RARKRRERWQRLAREAVRQCGRSTVPRIKEVTSLPQALEELEPETVGIMPWEGERNLSLR 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 LH+ H VA+ IGPEGG+ E V ++LGPRILR++T Sbjct: 181 SCLHS-RHPRRVALFIGPEGGFSEREVALARERG-VFTVTLGPRILRTET 228 >gi|296877184|ref|ZP_06901224.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296431704|gb|EFH17511.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 247 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGLASSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVESRQL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D +IV A E E Sbjct: 120 SKKVEKLEKIALGAAEQSKRNLVPSITLFEKKADFLAQLDQFDRIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ L + + + GPEGG E E+ + + LGPRILR++TA + A++ Sbjct: 180 LIQSLTGLEAGSKLLFIFGPEGGLSPAEIESFEAKGAILA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSVVT 243 >gi|184155285|ref|YP_001843625.1| hypothetical protein LAF_0809 [Lactobacillus fermentum IFO 3956] gi|183226629|dbj|BAG27145.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 249 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + +V K + + ++QK+ E+G I + + Q Sbjct: 61 KVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 ++R++ +AAEQ +P + L+ LL + + ++V +E+ Sbjct: 121 QGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGERAA 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++ + GPEGG E ET+ + V LGPRILR++TA + MA Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239 Query: 237 VQAIC 241 V Sbjct: 240 VSYHF 244 >gi|329924040|ref|ZP_08279303.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5] gi|328940879|gb|EGG37187.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5] Length = 256 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 17/252 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + + +GD ++A V+R + GD +++ +G E L +I + Sbjct: 1 MQRYFVTPAQFEGDRVEITGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSV 60 Query: 67 FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 F V + SQ + V S K ++++ +IQK E+G + P ++ T + Sbjct: 61 FAVVIEPMEMSQEPRLQVSIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P + P T + LL + + F E Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLR 180 Query: 179 --------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + L A ++ +++GPEGG+ E + + LG RILR +TA Sbjct: 181 DVLKPFAEQALRESAKPASLLLVVGPEGGFTEE-ECRAAEAAGAVAVGLGRRILRCETAG 239 Query: 231 VAAMALVQAICG 242 + A+A G Sbjct: 240 MTALACALYESG 251 >gi|261405594|ref|YP_003241835.1| hypothetical protein GYMC10_1745 [Paenibacillus sp. Y412MC10] gi|261282057|gb|ACX64028.1| protein of unknown function DUF558 [Paenibacillus sp. Y412MC10] Length = 256 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 17/252 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + + +GD ++A V+R + GD +++ +G E L +I + Sbjct: 1 MQRYFVTPAQFEGDRVEITGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSV 60 Query: 67 FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 F V + SQ V S K ++++ +IQK E+G + P ++ T + Sbjct: 61 FAVVIEPMEMSQEPLLQVSIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R AAEQ +P + P T + LL + + F E Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLR 180 Query: 179 --------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + L A ++ +++GPEGG+ E + + LG RILR +TA Sbjct: 181 DVLKPFAEQALRESAKPASLLLVVGPEGGFTEE-ECRAAEAAGAVAVGLGRRILRCETAG 239 Query: 231 VAAMALVQAICG 242 + A+A G Sbjct: 240 MTALACALYESG 251 >gi|296313945|ref|ZP_06863886.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC 43768] gi|296839486|gb|EFH23424.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC 43768] Length = 241 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++ L + + +L +VLR++ +NI LF+GK ++++ + K Sbjct: 1 MSRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTAQLTVLEKRRA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ I S +R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 KAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P L + +++ S N Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I H + ++GPEGG+ +E++ F ++LG RILR++TAA+AA+A Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAALAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|187735952|ref|YP_001878064.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC BAA-835] gi|187426004|gb|ACD05283.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC BAA-835] Length = 245 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R F+ + GD+ H+ A VLR+K+GD+ ++F+G + ++ +S Sbjct: 1 MARFFLPPSEWAAPAWELRGDEAHHAAKVLRLKQGDSCIVFDGCGRAAHAVVAEPPRSSG 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN----- 119 + + + + + K +D +IQKSVE+G+ AI P++T T Sbjct: 61 VLLVPGEECPPSPPVAHLTLCQAVPKGANMDLIIQKSVELGVSAIVPLVTDRTIVRLNAR 120 Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + + A +QC TLP + P L+ + A G Sbjct: 121 EAEAKRQKWQRIALEACKQCGQNTLPEVALPVPFAEWLRGGIPEGLNIIASLAPGVRPVR 180 Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L + + ++L+GPEG + E FV P++LGP +LR +TAA +A Sbjct: 181 EVLETARSRSVRHASLLVGPEGDFTDRETAMALEAGFV-PVTLGPIVLRVETAAFFGLAA 239 Query: 237 VQAIC 241 ++ Sbjct: 240 MRYAL 244 >gi|237715604|ref|ZP_04546085.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408613|ref|ZP_06085159.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646252|ref|ZP_06723905.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a] gi|294808155|ref|ZP_06766923.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC 1b] gi|298481449|ref|ZP_06999641.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22] gi|229444313|gb|EEO50104.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353478|gb|EEZ02572.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638385|gb|EFF56750.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a] gi|294444662|gb|EFG13361.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC 1b] gi|295086912|emb|CBK68435.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens XB1A] gi|298272313|gb|EFI13882.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22] Length = 232 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80 + ++ + VLR+ GD I L +GK + ++I+ F ++ + Sbjct: 14 ELPEEEAQHCTRVLRLGIGDEITLTDGKGNFYKAEITVATNKRCFVTIKETIFQEPLWPC 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + + ++ + Q A G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMIEFDPFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE + FV P+SLG LR++TAA+ A + Sbjct: 191 FSEEEVKKAIEQGFV-PISLGKSRLRTETAALVACHTLN 228 >gi|283479683|emb|CAY75599.1| UPF0088 protein yggJ [Erwinia pyrifoliae DSM 12163] Length = 205 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%) Query: 44 ILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKS 101 + LF+G + ++I K SR +++S + + + ++++ IQK+ Sbjct: 2 LELFDGTGLVFAAEIIQADKKNVCVKINASREDSRESPLHLHLGQVMSRGEKMEFTIQKA 61 Query: 102 VEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155 VE+G+ I P+ + + + + + I+A EQC +P + L+ Sbjct: 62 VELGVNVITPLFSERCGVKLDAERLAKKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAW 121 Query: 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVT 215 + ++ S N+L + V +LIGPEGG ++E F T Sbjct: 122 CAEPEPGLKLNLHPRAKHSINTLPL-----PVERVRLLIGPEGGLSADEITMTAQHGF-T 175 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGD 243 + LGPR+LR++T A+ A+ +Q GD Sbjct: 176 DILLGPRVLRTETTALTAITALQVRFGD 203 >gi|312864411|ref|ZP_07724644.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415] gi|311100132|gb|EFQ58343.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415] Length = 248 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 20/246 (8%) Query: 7 LKRLFV----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 +++ FV + PL IK D ++ V+R+K D + L + L+++ V Sbjct: 1 MQQYFVKGRPENPLTIK-----DKDTLKHMFQVMRLKADDKVTLVFDDGIKRLARVLNVD 55 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 ++ + V K ++LD++ QK+ E+G AI V+ Sbjct: 56 SQTFEILQGLEDNVELPVSVTIASGFPKGDKLDWLTQKATELGADAIWAFPADWSVVKWD 115 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + D++ + AA+Q LP + + LLK +I A E Sbjct: 116 GKKLAKKEDKLAKIALGAAQQSKRNRLPQVKLFEKKKDLLKQLPDFDKIFLAYEESAKAG 175 Query: 177 SLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L L + + GPEGG +E + P+ LGPRI+R++TA + Sbjct: 176 ELSTLASSLRQSQSGDKLLFIFGPEGGISPQELAEFEKSGAI-PVGLGPRIMRAETAPLY 234 Query: 233 AMALVQ 238 A++ V Sbjct: 235 ALSAVS 240 >gi|312898001|ref|ZP_07757410.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis F0359] gi|310620926|gb|EFQ04477.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis F0359] Length = 243 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++LF DFP I+ + S + ++ VLR GD + + +G + I+ Sbjct: 1 MRKLFTDFP--IEGEFYLSPEDSRHVVRVLRHVTGDVLTVSDGTGIAYTCLIADTAGERA 58 Query: 67 F---KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +T++ ++ + +K +R D+++QK+ E+G+ + P+ ++ Sbjct: 59 LMRPLKKIVPEDETERHELILAAALLKNDRFDWLVQKATELGVDRVVPIQMKHCVVKLDE 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R + + AA+QC +P + TL+ L++ +D + + G E + Sbjct: 119 KRRKERCARWQKIALEAAKQCGRTRVPSVDEVRTLKELIQEYDRYFFFIPYE---GEEKA 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLH-SLPFVTPLSLGPRILRSDTAAVAAMAL 236 A + I IGPEGGY EE E L S +SLG RI+R++TAA+AA ++ Sbjct: 176 ARIAVERAAGEDTVICIGPEGGYAPEEIEELTSSCEQYAVVSLGKRIMRAETAALAACSV 235 Query: 237 VQAICG 242 + G Sbjct: 236 IMYERG 241 >gi|260171577|ref|ZP_05757989.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. D2] gi|293370883|ref|ZP_06617428.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f] gi|315919891|ref|ZP_07916131.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292634099|gb|EFF52643.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f] gi|313693766|gb|EFS30601.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 232 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80 + ++ + VLR+ GD I L +GK + ++I+ F ++ + Sbjct: 14 ELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQEPLWPC 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + + ++ + Q A G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE + FV P+SLG LR++TAA+ A + Sbjct: 191 FSEEEVKKAIERGFV-PISLGKSRLRTETAALVACHTLN 228 >gi|325697805|gb|EGD39689.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK160] Length = 250 Score = 222 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+K GD + L + L+++ G Sbjct: 1 MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKAGDQVTLVFDDGIKRLAQVLDSGHQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK+ E+G A+ V + Sbjct: 59 LEILEELADNTELPVQVTIASGFPKGDKLEFITQKATELGACALWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L +I+ A E E Sbjct: 119 LGKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + V + GPEGG +E + V+ LGPRILR++TA + A+ Sbjct: 179 ALFRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|150006102|ref|YP_001300846.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides vulgatus ATCC 8482] gi|254883488|ref|ZP_05256198.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294775280|ref|ZP_06740803.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510] gi|319641723|ref|ZP_07996406.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A] gi|149934526|gb|ABR41224.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254836281|gb|EET16590.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294450857|gb|EFG19334.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510] gi|317386697|gb|EFV67593.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A] Length = 233 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I + + ++ + VLR+ GD I+L +GK + + IS GK + KV E + Sbjct: 9 IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R ++ +K+ E+G + + RY++ +R+ +SA Sbjct: 69 KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q T+P + T + + D Q A G + L+ + + + ++I Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKPLLKDI--LRSGEDALVMI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEG + EE + F P+SLG LR++TAA+ A + + Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230 >gi|319765029|ref|YP_004128966.1| hypothetical protein Alide_4381 [Alicycliphilus denitrificans BC] gi|330827224|ref|YP_004390527.1| ribosomal RNA small subunit methyltransferase E [Alicycliphilus denitrificans K601] gi|317119590|gb|ADV02079.1| protein of unknown function DUF558 [Alicycliphilus denitrificans BC] gi|329312596|gb|AEB87011.1| Ribosomal RNA small subunit methyltransferase E [Alicycliphilus denitrificans K601] Length = 237 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 15/240 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R L + + VLR++ GD + LFNG+ GEW + ++ +G+S + Sbjct: 1 MPRFHCPLSLAAGARIALPPTAARH-VQVLRLQPGDALTLFNGEGGEWTATVARMGRSDV 59 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V + + + + V + R+D++++K+ E+G +I+P+ + + Sbjct: 60 EVEVGAHAPVEREAARAVHLVVGMPANERMDWLVEKATELGAASIQPIAAARSVLKLAGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177 + ++A EQC +P + P L L+ ++V + + Sbjct: 120 RAAKRQQHWQAIAVAACEQCGRNRVPPVAAPLLLSDWLRQSAPEGARLVL----SLRDGA 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A V +L GPEGG ++E++ + F P SLG R+LR++TA+VAA+A++ Sbjct: 176 RALREAAGGAGAVWVLHGPEGGLTAQEEDAALAQGF-EPASLGARVLRAETASVAALAVL 234 >gi|160887114|ref|ZP_02068117.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483] gi|156107525|gb|EDO09270.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483] Length = 232 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80 + ++ + VLR+ GD I L +GK + ++I+ F ++ + Sbjct: 14 ELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQEPLWPC 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + + ++ + Q A G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE + FV P+SLG LR++TAA+ A + Sbjct: 191 FSEEEVKKAIERGFV-PISLGKSRLRTETAALVACHTLN 228 >gi|309388922|gb|ADO76802.1| protein of unknown function DUF558 [Halanaerobium praevalens DSM 2228] Length = 253 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 118/251 (47%), Gaps = 15/251 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + R F+D I + SG+ Y++L + LR+ GD ++L +G + ++I +Y +S Sbjct: 1 MHRFFIDQSTEIGKKVFISGNDYNHLKNSLRLDLGDRVILSDGNGFDLEAEIITYQTESA 60 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 K+ + +S+ + V K +++D +++K+ E+G + P+ ++ T Sbjct: 61 ELKILTKEKSKVEPKIKVWLAQGLPKKSKMDLIVEKATEIGFSGLIPLESKRTIVKYNQK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSE 175 R + +AA+Q +P I ++ + +D+ +++ DE + Sbjct: 121 KKAKKRSRWQRVAEAAAKQSGRAVIPKIKNFCNSNNIKSFKEKFDY-VLVLWEDEKKTTI 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 S K + IA + ++IGPEGG+ E ++LGPRILR++TA + A+ Sbjct: 180 KSFFKENEIAAEAKILLIIGPEGGFSEAEVNRFEQKLEAEIITLGPRILRTETAGIVALT 239 Query: 236 LVQA---ICGD 243 + + GD Sbjct: 240 AILSEKGELGD 250 >gi|56476009|ref|YP_157598.1| 16S ribosomal RNA methyltransferase RsmE [Aromatoleum aromaticum EbN1] gi|56312052|emb|CAI06697.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 241 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 13/229 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R F PL + + H+ VLR+++GD ++LF+G+ GE +++ G+ + Sbjct: 3 ISRFFFPCPLPDSGEIELPDALAHHALRVLRLRDGDPLVLFDGRGGELAARLQVRGRDAL 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + EY + + + + + ++D+++QK+VE+G A+ P+ + Sbjct: 63 AVRDEYHALERESPLSLVLVQALASGEKMDWIVQKAVELGTSALVPLQAERCVLKLSGER 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 H + R ISA EQ +P I P T L L + ++V SL Sbjct: 123 AHKRVAHWRQVAISACEQSGRNRVPEIEPITGLREYLASAAVGSRLVLTPVEGRRLASLA 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A H +L+GPEGG+ EE + V P+ LGPR+LR++T Sbjct: 183 RPDAALH-----LLVGPEGGWSDEELAMCRAAGCV-PVGLGPRVLRTET 225 >gi|148244283|ref|YP_001218977.1| hypothetical protein COSY_0119 [Candidatus Vesicomyosocius okutanii HA] gi|146326110|dbj|BAF61253.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 238 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+ + L I + +LA LR +G I LFNG +L+ I V + Sbjct: 5 RLYQNISLKINKKLVLDEYASCHLAKALRFLQGQEITLFNGDGRNYLATIVRVKNYCEVE 64 Query: 69 VEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + + + ++ Q ++ + K ++D++ QKSVE+G+ I P+ + Y + Sbjct: 65 IHTCTHNNSESQLNITLVQGITKGEKMDFLTQKSVELGVNRIIPIFSEYCVIHLQDEKLQ 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 M+R + I A EQ +P + E + N + S L Sbjct: 125 KRMERWQKIIIGACEQSGRSVIPSLVLAMNFEDFV-NTKFGNGFILHHRAKYS------L 177 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + I+IGPEGG +E + + + LG RILR++TA++A +A +Q + Sbjct: 178 LEMNKVNQATIIIGPEGGLSDQEIANANEQGAQSLV-LGSRILRAETASLATIANMQLLW 236 Query: 242 G 242 G Sbjct: 237 G 237 >gi|160889128|ref|ZP_02070131.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492] gi|317480687|ref|ZP_07939774.1| RNA methyltransferase [Bacteroides sp. 4_1_36] gi|156861135|gb|EDO54566.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492] gi|316903194|gb|EFV25061.1| RNA methyltransferase [Bacteroides sp. 4_1_36] Length = 232 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+ + ++ + VLR++ GD ++L +GK + ++IS ++ Q Sbjct: 9 IQAHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T + + I E G + L+ + + + +L Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYE--GEKPLLKDM--VHPGEDALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 IGPEG + EE F+ P+SLG LR++TAA+ A ++ Sbjct: 185 IGPEGDFSEEEVRKATENGFI-PISLGKSRLRTETAALVACHILN 228 >gi|332358374|gb|EGJ36199.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK49] Length = 250 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 14/245 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGMKRLARVLDPSQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK E+G I V + Sbjct: 59 LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASGIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SE 175 +++ AAEQ +P I L +I+ A E S Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKAGESA 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG EE V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAI 240 V + Sbjct: 238 AVSVL 242 >gi|322377483|ref|ZP_08051974.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334] gi|321281683|gb|EFX58692.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334] Length = 247 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPIQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++++ + AAEQ +P I L +D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIKLFEKKADFLAQFDQFDSIIVAYEESAKEGEAAA 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQTVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|312870591|ref|ZP_07730705.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3] gi|311093866|gb|EFQ52196.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3] Length = 251 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 13/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ D H+LA VLR + G+ + L +L++++ + + Sbjct: 1 MQRYFLAAEPSNDA-LTLPRDVAHHLATVLRAQPGEQVELVLADHRAYLAEVTTIQPATT 59 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ Q ++ +V + K + ++++QK+ E+G I + + Sbjct: 60 VKLVKQLPGNSELPVEVTLLCGLPKTKEKPEWIVQKATELGATTIAFFESERSISHWAAN 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 + R++ AAEQ P + L L ++V +E+ + Sbjct: 120 KRERKLARLQKIADGAAEQSHRNYQPRVAYYENLTAALAANPAPIRLVAWEESAKQGETS 179 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG + E E + + V P+ LGPRILR++TA + ++ Sbjct: 180 ALAQVLTKLTAGEQVVAIFGPEGGLTTGEVERMQAAG-VVPVGLGPRILRTETAPLYFLS 238 Query: 236 LVQAIC 241 V +C Sbjct: 239 AVSYVC 244 >gi|294084693|ref|YP_003551451.1| hypothetical protein SAR116_1124 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664266|gb|ADE39367.1| protein of unknown function DUF558 [Candidatus Puniceispirillum marinum IMCC1322] Length = 253 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 113/221 (51%), Gaps = 4/221 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+VD PL + +Q HYL +V+R+ G I LFNG+DGEW I + K + Sbjct: 13 RLYVDAPLQASGFVTVTKEQAHYLGNVMRLPLGTVIALFNGQDGEWHGVIDALDKQGGQI 72 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q+R QT D+ +F+P+K RLD++ QK+ E+G I PV T + Q + +R+ Sbjct: 73 ALTDQTRPQTNSPDLWLLFAPVKKARLDFIAQKASELGASRIWPVRTEFCQISRVKDERL 132 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---ENSLEKLHAI 184 I AAEQ + L + I L L + + +++ DE N L AI Sbjct: 133 AANAIEAAEQTERLDVARIMKFEKLATALAEREDDRLLIWCDEASAGAANHNITTALAAI 192 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 AILIGPEGG+ E++ L + SLGPRILR Sbjct: 193 DPPKKAAILIGPEGGFSPAERKVLTQVDNCLTTSLGPRILR 233 >gi|325679801|ref|ZP_08159372.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8] gi|324108471|gb|EGC02716.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8] Length = 241 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R FV+ G ++ LRM+ GD + + + +++ +I + Sbjct: 1 MPRFFVEREDINDHTALIRGADAVHIGRSLRMRLGDELTVC-CEGRDYICRIDTISDEQC 59 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V Q ++ + + K ++LD ++QKSVE+G I PV+T + Sbjct: 60 TLTVLSSGEGQGEPKTRLTLYQAVPKGDKLDTIVQKSVELGAAEIVPVLTARCVSRPDEK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +R+ + AA+QC +P + +L+ K + + E GS S Sbjct: 120 SFRKKRERLSRIALEAAKQCGRSIVPEVGEMISLDECAKRLGRHETGLICYEKGGSPLS- 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 A ++ + IG EGG+ EE E + + +G RILR +TA +AA+A++ Sbjct: 179 --ETVPADTGDIGVFIGSEGGFDEEEVEKCRANG-AKVIGMGSRILRCETAPLAAIAIIM 235 Query: 239 AICG 242 + G Sbjct: 236 NLTG 239 >gi|265755568|ref|ZP_06090189.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234174|gb|EEZ19767.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 233 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I + + ++ + VLR+ GD I+L +GK + + IS GK + KV E + Sbjct: 9 IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R ++ +K+ E+G + + RY++ +R+ +SA Sbjct: 69 KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q T+P + T + + D Q A G + L+ + + + ++I Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKLLLKDI--LRSGKDALVMI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEG + EE + F P+SLG LR++TAA+ A + + Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230 >gi|307709666|ref|ZP_07646118.1| RNA methyltransferase family protein [Streptococcus mitis SK564] gi|307619564|gb|EFN98688.1| RNA methyltransferase family protein [Streptococcus mitis SK564] Length = 247 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFEDGIKRLARVLDVETRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPAVWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L +D IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNMVPSIKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|262276809|ref|ZP_06054602.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114] gi|262223912|gb|EEY74371.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114] Length = 234 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67 RLF L K GD YHYL++V+R + G +I LFN +GE+L +I K + Sbjct: 5 RLFFIESLEEKKTINIIGDDYHYLSNVMRCEVGSDIFLFNENNGEYLCRIIEKNKKKLIL 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +V ++ + Q+++ IF P K+++LD +IQK E+G+ + PVI+ +T+N N++R+ Sbjct: 65 EVIQKAEYEKIQNNINLIFCPPKSHKLDTLIQKCTEIGVKSFIPVISDHTENRKLNLNRI 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R + EQ + L +P I+ P + + L + ++ FAD S+ +L KL I Sbjct: 125 RKIIKESVEQSNQLNIPHIFDPISFDQFLNQQKY--KVFFAD--IQSDINLSKLK-INLK 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 N +ILIGPEG + S+E +TL S SLG RILRS+TAA+A++ + +++ Sbjct: 180 ENNSILIGPEGDFSSKELKTLRSNNNFISFSLGKRILRSETAAIASL----VLFNNFF 233 >gi|94265595|ref|ZP_01289339.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|94269875|ref|ZP_01291589.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451038|gb|EAT01999.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453874|gb|EAT04232.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 241 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 5/223 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65 ++R F++ Q G +L VLR++ GD + LF+G ++IS + Sbjct: 1 MRRFFIEPTAITDRQAILQGADARHLRKVLRLQNGDEVELFSGDGLVHQARISGGAHDRV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH---Y 122 + ++ + + +K+ ++D +IQK E+G+ AI P ++ +T+ Sbjct: 61 ELAILASNQRPPADLRLHLGQAMLKSKKMDLVIQKCTELGVAAIHPYLSHHTKVPAPEPA 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R + + +QC+ P P + E L + E + E Sbjct: 121 KIQRWQKIIRESCKQCNQPWPPVCRPEASFEQALAAGADCDLRLLCWEDPTAAPLREVAD 180 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + ++ +LIGPEGG+ + E E + F+T + LG RILR Sbjct: 181 RLTTPRSLMVLIGPEGGFSNHEVEAAKAAGFLT-VGLGRRILR 222 >gi|254703098|ref|ZP_05164926.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 3 str. 686] Length = 214 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 22/220 (10%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 LRMKEGD +L+FNG+DGEW + + G K + + Q+R Q K S++ Y F+P+K +L Sbjct: 2 LRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQL 61 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 DYM+QK+VEMG G ++PVIT++TQ +R+R I AAEQC +L+LP + Sbjct: 62 DYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAEQCGVLSLPDCREALRFDR 121 Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 L WD + +++F DE S++ L L + P+ +LIGPEGG+ EE++ LH LPFV Sbjct: 122 FLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFV 180 Query: 215 TPLSLGPRILR----------SDTAAVAAMALVQAICGDW 244 T + LGPRILR LVQA+ GDW Sbjct: 181 TAIPLGPRILRADTAAVAAMA----------LVQAVLGDW 210 >gi|187778463|ref|ZP_02994936.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC 15579] gi|187772088|gb|EDU35890.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC 15579] Length = 255 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 28/254 (11%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 + FV I + GD ++ VLR++ GD+I + N + E+ KI + K + Sbjct: 6 KFFVPAENIIDKKAIIDGDDVKHIYKVLRLECGDSININNCQGKEYKGKIESIDKKSVVV 65 Query: 68 KVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121 K+ Q + + ++ K+ ++D ++QKS E+G+ I P+IT + Sbjct: 66 KILEQVKVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEIKTSLKEF 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +DR + A +QC +P + P LL+ I+ E+ + + Sbjct: 126 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKDMDLIIVPYESKENYGIKSLI 185 Query: 182 HAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 I + + E L + ++LGPRI R++TA Sbjct: 186 KNIQYEKENIKNIGIIIGPEGG--------FEESEIRLLEEIK-AQIVTLGPRIFRTETA 236 Query: 230 AVAAMALVQAICGD 243 + +++ GD Sbjct: 237 GIVCASIISYELGD 250 >gi|148260870|ref|YP_001234997.1| hypothetical protein Acry_1876 [Acidiphilium cryptum JF-5] gi|146402551|gb|ABQ31078.1| protein of unknown function DUF558 [Acidiphilium cryptum JF-5] Length = 238 Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L RL + PL S Q HYL V+R + GD +L+FN GE+ + I + + Sbjct: 1 MASLIRLHLPSPLSPGATLATSAAQAHYLGAVMRRRAGDPLLVFNAGSGEFAATIGALDR 60 Query: 64 SIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 V ++R+ + D F+P++ + + +++K+ E+G+ + PV+T TQ Sbjct: 61 RAATLVLGARTRAPEPEPDCWLCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARL 120 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 DR+ AAEQ + LT+P I P L L + + ++ A ++ L Sbjct: 121 RADRLAAIATEAAEQSERLTIPDIAEPAPLAAFLAAFPPSRRLFVA----AERHAAPPLS 176 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A+L+GPEGG EE + + FV+P++LGPRILR++TAA+A +A + A Sbjct: 177 PADPLQPHALLVGPEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLARLLA 233 >gi|293365945|ref|ZP_06612648.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307702347|ref|ZP_07639305.1| RNA methyltransferase family protein [Streptococcus oralis ATCC 35037] gi|291315623|gb|EFE56073.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307624150|gb|EFO03129.1| RNA methyltransferase family protein [Streptococcus oralis ATCC 35037] Length = 247 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFIKGSPISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFEDGIKRLARVLDVENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++++ + AAEQ +P I L +D IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIQLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAA 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQTVTGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|227544930|ref|ZP_03974979.1| protein of hypothetical function DUF558 [Lactobacillus reuteri CF48-3A] gi|300910042|ref|ZP_07127502.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112] gi|227185097|gb|EEI65168.1| protein of hypothetical function DUF558 [Lactobacillus reuteri CF48-3A] gi|300892690|gb|EFK86050.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112] Length = 246 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 14/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV+ + + + H+L V+R + G ++ L +L+ +S + Sbjct: 1 MQRYFVN--VTPANEVTLPSEAAHHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTAT 58 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ + + ++ V K + + ++QK+ E+G I + Sbjct: 59 LKINQKLDADSELPVSVTLACGIPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGN 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 ++R++ SAAEQ +P + L+ LL ++ +IV +E+ + Sbjct: 119 KQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLADYPATKRIVAWEESAKQGETS 178 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ +A+ ++ + GPEGG E ++ V LGPRILR++TA + MA Sbjct: 179 ALAQQFNALNLGDSLLAIFGPEGGLTENEIAKMNEAG-VVAAGLGPRILRTETAPLYFMA 237 Query: 236 LVQA 239 + Sbjct: 238 AISY 241 >gi|60680491|ref|YP_210635.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis NCTC 9343] gi|253563645|ref|ZP_04841102.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60491925|emb|CAH06684.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251947421|gb|EES87703.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162028|emb|CBW21572.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 229 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+T + ++ + VLR+ GD I L +GK + ++IS ++ Q Sbjct: 9 IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEISVATHKRCLVNIKETIYQE 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T ++ D Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPRLNEMTDFCTFIEK-DFKGQKFIAHCYEGEKPLLKDV--LTKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + FV P+SLG LR++TAA+ A + Sbjct: 186 GPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVACHTMN 228 >gi|258542801|ref|YP_003188234.1| 16S ribosomal RNA methyltransferase RsmE [Acetobacter pasteurianus IFO 3283-01] gi|256633879|dbj|BAH99854.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636938|dbj|BAI02907.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639991|dbj|BAI05953.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643047|dbj|BAI09002.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256646102|dbj|BAI12050.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256649155|dbj|BAI15096.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256652142|dbj|BAI18076.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655199|dbj|BAI21126.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 275 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 7/241 (2%) Query: 3 IHSHLKRLFVDFPLCIKTQGKAS----GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 +HL RL+ + + DQ YL VLR K GD++ +FN GEWL++I Sbjct: 24 ASAHLPRLYNASEILGDAHTGLTLQIAPDQARYLGTVLRKKAGDHVRIFNANSGEWLARI 83 Query: 59 SYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + K F++E Q R+ T+Q + F+ +K + D +++ E+G+ P+IT T Sbjct: 84 TEIRKDKGFFELERQLRAPTQQPTLVLAFALLKRDATDLVLRMGTELGVTHFMPLITERT 143 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN- 176 N DR+ A EQC+ +P I P + L +W ++ A E Sbjct: 144 NTHRINPDRLHAIATEATEQCERFDVPQIESPQSFTDFLASWPQEHRLFAAVERGEDRAI 203 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L AH + L+GPEGG E + + +TP+SLGP +LR+DTA A +AL Sbjct: 204 HTPSLLPNAHAGD-GFLVGPEGGLSDRECQMMLKYSCITPISLGPLVLRADTAVAAGLAL 262 Query: 237 V 237 + Sbjct: 263 I 263 >gi|327459188|gb|EGF05536.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1057] Length = 250 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+K GD + L + L+++ G+ Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKAGDQVTLVFDDGMKRLARVLDPGQHS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +E + + V K ++L+++ QK+ E+G GAI ++ + Sbjct: 59 LEIMEELADNTELPVQVTIASGFPKGDKLEFITQKATELGAGAIWAFQADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + +I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFQAALADFDRIIVAYEESAKEGETA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG EE V+ LGPRILR++TA + + Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYTLT 237 Query: 236 LVQAIC 241 + + Sbjct: 238 AISVLL 243 >gi|319954606|ref|YP_004165873.1| ribosomal RNA small subunit methyltransferase e [Cellulophaga algicola DSM 14237] gi|319423266|gb|ADV50375.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga algicola DSM 14237] Length = 238 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 13/239 (5%) Query: 7 LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++ LF + + T + ++ ++ VLR KEGD + L NGK + ++I + Sbjct: 1 MQ-LFYNPDINQDTPEFIFPTEESKHIVKVLRKKEGDILHLTNGKGYLFEAEILRADLRK 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 K+ ++ + + + +P K +R ++ ++K+ E+G+ I P+I ++ Sbjct: 60 CAVKIIKETYHKKNSPALHLVVAPTKMNDRYEWFLEKATEIGVTEITPIICDNSERKVLK 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSL 178 +DR+ +A +Q P + P + + ++ + + E + Sbjct: 120 LDRMEKVLQAAMKQSLQFHKPILNEPISAKTFIEQNNPTHQEEQQFFIAHCEETEKIDLK 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E+L N ILIGPEG + + E E L + P+SLG LR++TAA+ A A + Sbjct: 180 ERLI---PSHNALILIGPEGDFSTSEIEIALRLGY-KPVSLGENRLRTETAAIFACATM 234 >gi|34495822|ref|NP_900037.1| hypothetical protein CV_0367 [Chromobacterium violaceum ATCC 12472] gi|34101677|gb|AAQ58045.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 241 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 16/231 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R ++D L + Q + VLR+ GD I LFNG+ GE+ + +S V K Sbjct: 1 MPRFYLDADLAVGQQLSLPDAVVRH-VQVLRLNAGDAITLFNGRGGEYQAALSAVMKRDA 59 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V + S+ + +++++ +QK VEMG+ +P+ + + Sbjct: 60 HCVIERFDDVSRETPLWLGLAQGISGGDKMEFTLQKGVEMGVSVFQPIAAGRSVVKLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177 + R + +SA EQ T+P + P TL L + + +++ + + S Sbjct: 120 RADKRVARWQEIVVSACEQSGRNTVPQVLPILTLNEWLAQRQEADIRLILSPR---GDRS 176 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L +L ++ GPEGG+ ++E++ + + TPL LGPRILR++T Sbjct: 177 LAQL--AERPARSWLMAGPEGGFSAQEEDAALAAGW-TPLKLGPRILRTET 224 >gi|322388771|ref|ZP_08062368.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC 700779] gi|321140390|gb|EFX35898.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC 700779] Length = 247 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEARKL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 + + + V K ++L+++ QK E+G I V + Sbjct: 60 ELIGELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L +D +IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSITLFEKKADFLAQFDQFDRIVVAYEESAKEGESAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LIQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 ISVLL 243 >gi|327472984|gb|EGF18411.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK408] Length = 250 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KE + + L + L+++ G+ Sbjct: 1 MQQYFIKGSPQSP--LLVTDKDTAKHMFSVMRLKEDEQVTLVFDDGMKRLARVLDPGQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK+ E+G GA+ V ++ Sbjct: 59 LEILEEMADNTELPVRVTIASGFPKGDKLEFITQKATELGAGALWAFPADWSVAKWDSKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L +I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKTDFLATLADFDRIIVAYEESAKEGETA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG S+E V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLETGAKVLFIFGPEGGLSSDEIAAFDQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|154493617|ref|ZP_02032937.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC 43184] gi|154086827|gb|EDN85872.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC 43184] Length = 232 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 10/237 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + I + ++ + VLR+ EGD ILL +GK + + IS K Sbjct: 1 MQIFYTPE---IAVNLELPEEEAGHCIRVLRLTEGDEILLTDGKGFFFKAAISRAHPKHC 57 Query: 66 RFKVEYQSRSQT-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + Q ++ +P K +R+++ +K+ E+G+ AI + R+++ Sbjct: 58 EVNILEQWEQPALWNFNLHIAVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIK 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ ISA +Q TLP + T + + + E + H Sbjct: 118 PARLEKILISAMKQSQKATLPELNGMTDFRTFVSLPFAGRKFIAHCEEGVKPLLKQTYH- 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N +LIGPEG + EE F P+SLG LR++TAA+ A + + Sbjct: 177 --PGENALVLIGPEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVACHTIHVL 230 >gi|119492311|ref|ZP_01623658.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106] gi|119453196|gb|EAW34363.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106] Length = 259 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY---VG 62 L+RL + + +Q HYL VLR+++GD ++ +G+ WL+++ Sbjct: 3 QLQRLAIALAQISNRHIDLTAEQQHYLGRVLRLRQGDRFIVIDGRGHWWLAQLQVMLPAP 62 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120 +E S V+ S KT D +++ S E+G+ I PVI++ T + + Sbjct: 63 SPHAKILEAISVQNELPIAVKLWVSLPKTG-FDDLVRYSTELGVSEIVPVISQRTVLKPS 121 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENSLE 179 ++R R AAEQ + +P + P + + ++ + C + L Sbjct: 122 SQKVERWRRIIREAAEQSERQIIPTLVDPISFANAIADFPDFSLAATSQPYLCLARGDLP 181 Query: 180 KL-----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + ++ + GPEGG+ S E E + F +SLG RILR+ TA V A+ Sbjct: 182 HLYDCMSSTQSTCDSITLATGPEGGWTSAEVEMAIASGF-QAVSLGRRILRAVTAPVVAL 240 Query: 235 ALVQAIC 241 + V AI Sbjct: 241 SYVSAIW 247 >gi|225861586|ref|YP_002743095.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae Taiwan19F-14] gi|225727552|gb|ACO23403.1| protein YqeU [Streptococcus pneumoniae Taiwan19F-14] gi|327389950|gb|EGE88295.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA04375] gi|332200328|gb|EGJ14401.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA47368] Length = 247 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELDDNVELPVQVTISSGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|265762508|ref|ZP_06091076.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255116|gb|EEZ26462.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 229 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+T + ++ + VLR+ GD I L +GK + ++IS ++ Q Sbjct: 9 IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEISVAAHKRCLVNIKETIYQE 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T ++ D Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPRLNEMTDFCTFIEK-DFKGQKFIAHCYEGEKPLLKDV--LTKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + FV P+SLG LR++TAA+ A + Sbjct: 186 GPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVACHTMN 228 >gi|119358138|ref|YP_912782.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium phaeobacteroides DSM 266] gi|119355487|gb|ABL66358.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides DSM 266] Length = 248 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 18/243 (7%) Query: 10 LFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 LF P ++ T+ GD++H+L V+R K GD +LL +G + +I +GK + Sbjct: 3 LFYTTPKNLEGSRTEIALEGDEFHHLVRVVRKKPGDEVLLTDGNGSRFHVRIREIGKQRL 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + +S + V S +K +R D ++K+ E+G+ AI P+IT T + Sbjct: 63 TADILTRSIYPPSPTAVTVAMSLLKTPHRFDLFLEKATELGVTAIIPMITARTIALPPKE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +DR + +SA+ Q L LP I+ P + +L +++ +I+ + +N L Sbjct: 123 RIQGKLDRWQGIVLSASRQSKRLFLPRIHEPLSFAKVLDRDEYDLRILAHE--SSEQNPL 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 NV +IGPEGG+ SEE S + SLG ILR++TA V A+A+V+ Sbjct: 181 IDFAE----KNVLFMIGPEGGFTSEEVSRARSCGVLES-SLGHTILRAETAGVFAVAMVR 235 Query: 239 AIC 241 A Sbjct: 236 ARL 238 >gi|53712317|ref|YP_098309.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis YCH46] gi|52215182|dbj|BAD47775.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 229 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+T + ++ + VLR+ GD I L +GK + ++IS ++ Q Sbjct: 9 IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEISVATHKRCLVNIKETIYQE 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T ++ D Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPRLNEMTDFYTFIEK-DFKGQKFIAHCYEGEKPLLKDV--LTKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + FV P+SLG LR++TAA+ A + Sbjct: 186 GPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVACHTMN 228 >gi|114331048|ref|YP_747270.1| hypothetical protein Neut_1049 [Nitrosomonas eutropha C91] gi|114308062|gb|ABI59305.1| protein of unknown function DUF558 [Nitrosomonas eutropha C91] Length = 253 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 116/254 (45%), Gaps = 22/254 (8%) Query: 9 RLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F P+ Q + D H+ VLR+K+GD ++LF+G GE+ + V KS Sbjct: 4 RFFHTLPIHPDAKQVTLNNDTSHHAVQVLRLKQGDPVILFDGTGGEFSGCLVQVRKSACV 63 Query: 68 KVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 Q ++S + + ++D++IQK+VE G+ I+P+IT T + Sbjct: 64 VKIEQHLPVERESPLMLTLAQAVCTNEKMDWIIQKAVEQGVIYIQPLITNRTLIRLTGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---------WDHNCQIVFADE 170 + ISA EQC +P + P +L L+ I+ + Sbjct: 124 ADKRWQHWQKIIISACEQCGRNRIPQLLPLMSLSHWLEQKLLQKQENSNLSGRDIILSPV 183 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 L +L + +L GPEGG+ EE + + F+ P+ LG RILR++TAA Sbjct: 184 A---RLRLAELSPPESGECITLLTGPEGGFTEEETDAMLHAGFI-PICLGTRILRTETAA 239 Query: 231 VAAMALVQAICGDW 244 +AA+A Q + GD+ Sbjct: 240 LAAIAAAQVLWGDY 253 >gi|270296112|ref|ZP_06202312.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273516|gb|EFA19378.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 232 Score = 220 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I+T + ++ + VLR++ GD ++L +GK + ++IS ++ Q Sbjct: 9 IQTHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q LP + T + + I E G + L+ + + + +L Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYE--GEKPLLKDM--VHPGEDALVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 IGPEG + EE F+ P+SLG LR++TAA+ A ++ Sbjct: 185 IGPEGDFSEEEVRKATENDFI-PISLGKSRLRTETAALVACHILN 228 >gi|237721383|ref|ZP_04551864.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449179|gb|EEO54970.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 232 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 7/219 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80 + ++ + VLR+ GD I L +GK + ++I+ F ++ + Sbjct: 14 ELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQEPLWPC 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + +++ +R+ ISA +Q Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCHFSERKVIKTERIEKILISAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + + ++ + Q A G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE + FV P+SLG LR++TAA+ A + Sbjct: 191 FSEEEVKKAIERGFV-PISLGKSRLRTETAALVACHTLN 228 >gi|212692063|ref|ZP_03300191.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855] gi|237724658|ref|ZP_04555139.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212665455|gb|EEB26027.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855] gi|229436853|gb|EEO46930.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 233 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I + + ++ + VLR+ GD I+L +GK + + IS GK + KV E + Sbjct: 9 IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R ++ +K+ E+G + + RY++ +R+ +SA Sbjct: 69 KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q T+P + T + + D Q A G + L+ + + + ++I Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKLLLKDI--LRSGEDALVMI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEG + EE + F P+SLG LR++TAA+ A + + Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230 >gi|168492597|ref|ZP_02716740.1| protein YqeU [Streptococcus pneumoniae CDC0288-04] gi|183573256|gb|EDT93784.1| protein YqeU [Streptococcus pneumoniae CDC0288-04] Length = 247 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELDDNVELPVQVTISSGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|218262623|ref|ZP_03477011.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii DSM 18315] gi|218223272|gb|EEC95922.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii DSM 18315] Length = 232 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 10/237 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + I + ++ + VLR+ EGD ILL +GK + + IS K Sbjct: 1 MQIFYTPE---IAVNPELPEEEAGHCIRVLRLTEGDEILLTDGKGSFFKAAISRAHPKHC 57 Query: 66 RFKVEYQSRSQT-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + Q ++ +P K +R+++ +K+ E+G+ AI + R+++ Sbjct: 58 EVNILEQWEQPALWNFNLHIAVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIK 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ +SA +Q TLP + T + + + E + H Sbjct: 118 PARLEKILVSAMKQSQKATLPELNGMTDFRTFVSLPFAGRKFIAHCEEGVKPLLKQTYH- 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N +LIGPEG + EE F P+SLG LR++TAA+ A + + Sbjct: 177 --PGENALVLIGPEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVACHTIHVL 230 >gi|153807645|ref|ZP_01960313.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185] gi|149130007|gb|EDM21219.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185] Length = 233 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 7/226 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I+ + ++ + VLR+ GD I L +GK + ++I+ K + E + Sbjct: 9 IQKTNELPEEEAQHCTRVLRLSIGDEITLTDGKGSFYKAEITAATNKRCLVAIKETIFQK 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKNERIEKILISA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + N + Q A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPKLNEMTDFNKFI-NQEFKGQKFIAHCYEGEKPLLKDV--LKAGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEG + E E F TP+SLG LR++TAA+ A + + Sbjct: 186 GPEGDFSEGEVEKAIERGF-TPISLGKSRLRTETAALVACHTLNLL 230 >gi|15903649|ref|NP_359199.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae R6] gi|182684729|ref|YP_001836476.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14] gi|15459275|gb|AAL00410.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|182630063|gb|ACB91011.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14] Length = 251 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 12/248 (4%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + + +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MEASMQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDME 59 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 V+ + + V K ++L+++ QK E+G I V Sbjct: 60 NRQFELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWD 119 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKLGKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEG 179 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L+ + + + + GPEGG E E+ + V LGPRILR++TA + Sbjct: 180 EAAALLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLY 238 Query: 233 AMALVQAI 240 A++ + + Sbjct: 239 ALSALSVL 246 >gi|218246145|ref|YP_002371516.1| hypothetical protein PCC8801_1295 [Cyanothece sp. PCC 8801] gi|218166623|gb|ACK65360.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8801] Length = 239 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 10/234 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RL ++ + + + +Q HYL VLR+K GD + +G+ +L+++ I Sbjct: 1 MYRLVIESIQTLDQSVRLTPEQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEEDSAKI- 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124 +E + + + K N + +++ E+G+ + P+I++ T + + + + Sbjct: 60 --LENLKECTELPLAITLMVALPKGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKL 117 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEKLH 182 +R R A EQ + +P I P L+N D + + + + L L Sbjct: 118 ERWRKIATEAGEQSERQLIPTIVDPIVFNEALRNIDKIPSDRYICVTRKKA-HHLLTHLS 176 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + P + I G EGG+ EE ET + F P++LGPRILR+ TA + A++L Sbjct: 177 ETSQNP-LVIATGCEGGWTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSL 228 >gi|228477933|ref|ZP_04062546.1| ribosomal RNA small subunit methyltransferase E [Streptococcus salivarius SK126] gi|228250326|gb|EEK09571.1| ribosomal RNA small subunit methyltransferase E [Streptococcus salivarius SK126] Length = 247 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ D ++ +V+R+ E D ++L + L++++ I Sbjct: 1 MQQYFIKG-QVENPVIIKDKDTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHIF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++LD + QK+ E+G AI V+ + Sbjct: 60 EVIEDLNDNVEMPVSVTIASGFPKGDKLDLVTQKATELGAQAIWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P + L D+ +I A E L Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELAT 179 Query: 181 LH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LARELVQVENSQKILFIFGPEGGISPSEIDVFEEAGGLK-IGLGPRIMRTETAPLYALSS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|229916343|ref|YP_002884989.1| hypothetical protein EAT1b_0613 [Exiguobacterium sp. AT1b] gi|229467772|gb|ACQ69544.1| protein of unknown function DUF558 [Exiguobacterium sp. AT1b] Length = 254 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ D H++ VLR G ++L +G E+ ++ + K Sbjct: 1 MQRYFLTKEAFKGETVTLPSDVVHHIGTVLRQGPGYEMVLLDGTGVEYACVVTSLEKKSG 60 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 SR +V ++ K ++++ + QK+ E+G+ + R V + Sbjct: 61 EAKVMSSRQATTELPIEVTLAYALPKGDKVELVAQKATELGVHHLLLFESTRSVAKWDGK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 ++R++ AAEQ +P + + L + D +V A E E Sbjct: 121 KAPKKVERIQKIMQEAAEQSYRAVVPTCTYISP-KELQQKIDGYDAVVIAYEESAKEGEQ 179 Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L + V ++ GPEGG+ E T + GPRILRS+TA + A+ Sbjct: 180 SAFAQLLTQLKPKQRVLVITGPEGGFDVNEINQWTQAG-ATACAFGPRILRSETAPLYAL 238 Query: 235 ALVQAIC 241 + + Sbjct: 239 SAISFAL 245 >gi|16329261|ref|NP_439989.1| hypothetical protein slr0722 [Synechocystis sp. PCC 6803] gi|6226389|sp|P72667|RSME_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|1651741|dbj|BAA16669.1| slr0722 [Synechocystis sp. PCC 6803] Length = 303 Score = 220 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 4/236 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL V I+ + Q HYL VLR+++GD ++ +G G W ++++ + Sbjct: 67 RLVVAPEQIIEATVTLTTAQLHYLQRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQL 126 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 +E S V + K + + +I+ E+G A +P++T T + + ++R Sbjct: 127 LETVSEQNELPLPVTLAIALPKGSGFEEIIRPCTELGATAFQPLLTERTLLKPSQNKLER 186 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + AAEQ + LP + P T ++ + T + L ++ Sbjct: 187 WQRIVTEAAEQSERQWLPPVAAPLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSN 246 Query: 187 IP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +P + + GPEGG+ E + F P+SLG RILR+ TA A+A + A+ Sbjct: 247 LPAQIVLATGPEGGWTDNEISLAIAKGF-QPVSLGKRILRAVTAPTVALAQINALL 301 >gi|332827614|gb|EGK00356.1| hypothetical protein HMPREF9455_03309 [Dysgonomonas gadei ATCC BAA-286] Length = 233 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 10/234 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 F L + ++ + VLR KEGD ILL +GK + ++I Sbjct: 6 FFTPDILS---NVELPAEEALHCIKVLRKKEGDEILLTDGKGFFYDAEIMQANPKHCMVN 62 Query: 70 EYQSRSQT--KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ Q ++Q F+P K +R+++ +K+ E+G+ + P++ R+++ R Sbjct: 63 ILKTIEQPKGWNFNLQIAFAPTKNIDRIEWFAEKATEIGIDRLSPILCRHSERKEIKAQR 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + +SA +Q LP + + +K + + Q A + L+ ++ Sbjct: 123 IEKILVSAMKQSQKALLPQLDEMQSFPAFIKQ-EFDGQKFIAHCYPQEKVLLKDIY--KK 179 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N ILIGPEG + EE + F +SLG LR++TAA+ A + + Sbjct: 180 GGNALILIGPEGDFSEEEVKMAIDHGF-KSISLGDSRLRTETAALVACHTLHVL 232 >gi|332201188|gb|EGJ15259.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA47901] Length = 247 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAVSPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D ++ A E G E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSVIVAYEESGKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|329956990|ref|ZP_08297558.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056] gi|328523747|gb|EGF50839.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056] Length = 232 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I++ + ++ + VLR++ GD + L +GK + ++IS ++ Q Sbjct: 9 IQSHTELPEEEAVHAIRVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNILETTPQA 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWSGYLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + N + A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPRLNEMTDFNKFISQ-SFNGRKFIAHCYEGEKPLLKDI--VRKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + F P+SLG LR++TAA+ A +V Sbjct: 186 GPEGDFSEEEVKKAIENGF-EPISLGRSRLRTETAALVACHIVN 228 >gi|258647970|ref|ZP_05735439.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259] gi|260851810|gb|EEX71679.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259] Length = 255 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 19/250 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 +K V + I T + D+ ++ VLRMKEG+ I++ +GK + + +S V K Sbjct: 1 MKEFHVFYAPDIATNKELPHDEAQHITKVLRMKEGEEIIITDGKGSFYKAALSLVTNKHC 60 Query: 66 RFKVEYQSRSQT-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 ++ Q ++ ++ ++ +P K +R+++ ++K+ E+G+ I V +++ Sbjct: 61 SVQLLSQESARPLWKNKLEIAVAPTKHLDRMEWFVEKATEIGVDQINFVACEFSERKQIK 120 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFAD------------- 169 ++R+ ISA +Q LP I T + + ++ I Sbjct: 121 IERMNRIAISAMKQSHKAILPQIPEMITFNAFINRPFEGKRYIAHCYNMENICDADSSPT 180 Query: 170 ETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 S +S L + +LIGPEG + E E + F+ P+SLG LR++T Sbjct: 181 NASTSIHSSAFLGQLLKGEESTQVLIGPEGDFSMREVEAAMAAGFI-PVSLGNSRLRTET 239 Query: 229 AAVAAMALVQ 238 AA+ A+ L+ Sbjct: 240 AALVAVHLMN 249 >gi|324992255|gb|EGC24177.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK405] Length = 250 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDSVKRLARVLDPSQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK E+G AI V + Sbjct: 59 LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++ AAEQ +P I L +I+ A E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAA 178 Query: 180 KL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L ++ + + GPEGG +E V+ LGPRILR++TA + A+ Sbjct: 179 TLVQAVRGLSKGDKLLFIFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|218778356|ref|YP_002429674.1| hypothetical protein Dalk_0499 [Desulfatibacillum alkenivorans AK-01] gi|218759740|gb|ACL02206.1| protein of unknown function DUF558 [Desulfatibacillum alkenivorans AK-01] Length = 257 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 10/248 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + +R +++ + +G + VLR+ +GD ++L + E++ I G Sbjct: 1 MAETRRFYIEPEQITGDRAFITGQDAKHAKKVLRLAKGDPVILLDNSGLEYMGVILSAGA 60 Query: 64 SIRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 +VE Q R + + + IKT+++D +++ E+GM RP + Sbjct: 61 R-DMEVEIQDRRLGATESPLKIDLAMAMIKTSKMDKLLKGVTELGMHGWRPFYASRSVPK 119 Query: 121 HY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSE 175 DR + A +QC+ + LP ++ P + E L + +++ +VF +++ Sbjct: 120 VKDPEDRRDRWKKIAAEAVKQCERVRLPDVHAPVSFEELCAISAEYDLGVVFWEKSRTPF 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + + +V ++IGPEGG+ E L V LGPRILR++TAA+A+ A Sbjct: 180 QQVLQSRLDSPPKSVLVVIGPEGGFEDHETARLEESGMVHA-GLGPRILRAETAALASCA 238 Query: 236 LVQAICGD 243 L+QA GD Sbjct: 239 LIQAGFGD 246 >gi|160947756|ref|ZP_02094923.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270] gi|158446890|gb|EDP23885.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270] Length = 242 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 112/244 (45%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F D + + K GD Y+++ VLR+ E + I + ++ I K I Sbjct: 1 MHRFFTDES-ILDGKVKIYGDDYNHIKKVLRITEDEKIEVVV-LGELYIGNIEICDKYIS 58 Query: 67 F-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +E S + + + + K ++D ++QK+VE+G+ I V ++ + Sbjct: 59 VYNLEKISENTESKIKIHLLQCLAKGEKMDLIVQKAVELGVYDITLVNSKRCIVKFDEKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENS 177 + ++R++ + A++Q L +P I + ++ N +V +E + Sbjct: 119 ENKKIERLQKISYEASKQSKRLIVPKINELIQFKDIINFVGDNYLLVAYEEDKNISLRDV 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + ++ ++ ILIG EGG+ EE E L + + + LG RILR++TA + ++++ Sbjct: 179 ITRIKEENSCKDIYILIGSEGGFEREEVEFLTNNGAFS-IGLGARILRTETAGINLLSIL 237 Query: 238 QAIC 241 Q Sbjct: 238 QYEF 241 >gi|315613654|ref|ZP_07888561.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314345|gb|EFU62390.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 247 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D ++L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVILVFNDGIKRLARVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + A+EQ +P I L D IV A E E Sbjct: 120 GKKVEKLEKIALGASEQSKRNLVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ S V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLEKGAKLLFIFGPEGGLSPAEIESFESKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|149011364|ref|ZP_01832611.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae SP19-BS75] gi|237649845|ref|ZP_04524097.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI 1974] gi|237820772|ref|ZP_04596617.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI 1974M2] gi|147764354|gb|EDK71285.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae SP19-BS75] Length = 247 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAITGLDTGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|227514619|ref|ZP_03944668.1| protein of hypothetical function DUF558 [Lactobacillus fermentum ATCC 14931] gi|227087030|gb|EEI22342.1| protein of hypothetical function DUF558 [Lactobacillus fermentum ATCC 14931] Length = 249 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FVD L + D H+L V+R G + L +L+ + + Sbjct: 1 MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + V K + + ++QK+ E+G I + + Q Sbjct: 61 KVEQDLGGDSELPIKVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 ++R++ T +AAEQ +P + L+ LL + + ++V +E+ Sbjct: 121 QGKKVERLQKITNAAAEQSHRDQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGERAA 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++ + GPEGG E ET+ + V LGPRILR++TA + MA Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239 Query: 237 VQAIC 241 V Sbjct: 240 VSYHF 244 >gi|326569446|gb|EGE19506.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis BC8] Length = 246 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 18/237 (7%) Query: 7 LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + R FVD PL I H+ VLR GD LF+G GE+ ++++ K Sbjct: 1 MPRFFVDTPLTTNLIGQIITLPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIDK 60 Query: 64 S-IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118 K++ Y ++T + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120 Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + ++ ++A EQC + +P I P L+ + N ++V A + Sbjct: 121 KYDRDFKKITHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + KL N+++LIG EGG E + FV P +G R+LR++TA V Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVV 230 >gi|125717118|ref|YP_001034251.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus sanguinis SK36] gi|125497035|gb|ABN43701.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 250 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+K GD ++L + L+++ + Sbjct: 1 MQQYFIKGNPQSPLEVT-DKDTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK+ E+G A+ V + Sbjct: 60 EIVEELADNTELLVQVTIASGFPKGDKLEFITQKATELGACALWGFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +++ AAEQ +P I L +I+ A E Sbjct: 120 AKKSEKLEKIAQGAAEQSRRNLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L ++ + + GPEGG EE V+ LGPRILR++TA + A+ Sbjct: 180 LVQAVRGLSKGDKLLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSVLL 243 >gi|332187403|ref|ZP_08389141.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17] gi|332012564|gb|EGI54631.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17] Length = 247 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 135/239 (56%), Gaps = 7/239 (2%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RLFVD L + G HYL V+R K GD + LF+ + GEWL + VGK + Sbjct: 13 PRLFVDQILAEG-PIRIDGPAAHYLVSVMRTKVGDPVKLFDDRTGEWLGVAASVGKRDLT 71 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 V + R + D+ +P+K R+D++ +K+ E+G+ + PV+TR T N +R Sbjct: 72 LDVTQRLREREAVPDLWLCAAPLKKGRVDWLAEKACELGVARLVPVVTRRTVVDKPNTER 131 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-A 185 +R + I AAEQC LP + P L LL++W + FADE G L L A+ A Sbjct: 132 LRAHMIEAAEQCGRTALPQVAEPVKLPALLRDWPEERALFFADENGG----LPALEAMRA 187 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 H AILIGPEGG+ SEE+E + +LP + LGPRILR+DTAA AA++L A GDW Sbjct: 188 HQGPAAILIGPEGGFDSEEREAIRALPSAIGIGLGPRILRADTAAAAAVSLWMAAAGDW 246 >gi|71909198|ref|YP_286785.1| hypothetical protein Daro_3586 [Dechloromonas aromatica RCB] gi|71848819|gb|AAZ48315.1| 16S rRNA m(3)U-1498 methyltransferase [Dechloromonas aromatica RCB] Length = 245 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 16/230 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R + L + + VLR+ G ++LF+G+ GE+ + I + + F Sbjct: 4 PRFYCREALSPGAHIELPEPVARHAVRVLRLPPGAPMVLFDGRGGEYPAHIERIERDRVF 63 Query: 68 KVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V + + + + + +++D+ IQK+VE+G+ I PV +R + + Sbjct: 64 AVLGAWCEIECESRLAITLVQALQAGDKMDFTIQKAVELGVRDIVPVESRRSVIRLAGER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSL 178 + + SA EQC +P + P LE L H +++ A + Sbjct: 124 AAKRVAHWQGVAASACEQCGRNQVPLVAPLEKLEHWLARPSHGELRLMLAPDAE------ 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L +I + V +LIG EGG +E F + LGPR+LR++T Sbjct: 178 DTLASIRPVGQVQLLIGAEGGLDPQEVMAARQAGF-QAVRLGPRVLRTET 226 >gi|237709004|ref|ZP_04539485.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457066|gb|EEO62787.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 233 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75 I + + ++ + VLR+ GD I+L +GK + + IS GK + KV E + Sbjct: 9 IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTEAIPQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R ++ +K+ E+G + + RY++ +R+ +SA Sbjct: 69 KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q T+P + T + + D Q A G + L+ + + + ++I Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKFLLKDI--LRSGEDALVMI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 GPEG + EE + F P+SLG LR++TAA+ A + + Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230 >gi|282859154|ref|ZP_06268280.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010] gi|282588072|gb|EFB93251.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010] Length = 262 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 108/242 (44%), Gaps = 17/242 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRF 67 +V K Q + ++ + VLRMKEGD + L +G + +++ + + Sbjct: 7 FYVP---NAKAQTELPTEEALHAVRVLRMKEGDELFLMDGVGCFYRAEVVLTSAKRCAYA 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 E +++T + + +P K R+++M++K+ E+G+ I + R+++ +DR Sbjct: 64 IKETLPQTKTWEGRIHLAIAPTKDMGRIEWMVEKATELGIDEITFLDCRFSERKQIRIDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---------QIVFADETCGSENS 177 + ISA +Q P + + + ++ + N I + Sbjct: 124 IEKIVISAMKQSRKGWKPIVNEMVSFKEFIQTMETNASQQEYSLASFICHCYNEIDKNDF 183 Query: 178 LEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++ +V IL+GPEG + +E + + F ++LG LR++TA + A+A+ Sbjct: 184 FSVITEQENLKDDVLILVGPEGDFSIDEVQLALAAGF-QSVTLGESRLRTETAGLNAIAM 242 Query: 237 VQ 238 Q Sbjct: 243 TQ 244 >gi|194396708|ref|YP_002038374.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae G54] gi|194356375|gb|ACF54823.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 247 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVSGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|119510272|ref|ZP_01629409.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414] gi|119465121|gb|EAW46021.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414] Length = 235 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 13/240 (5%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L+R+ + + + +Q HYL VLR++ GD + +GK WL+++ Sbjct: 1 MAQLQRIAIAPSQIQENLITLTKEQQHYLRRVLRLRTGDRFIAMDGKGKWWLTQLESEQA 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +E + + + + K N D +I+ S E+G+ I P+++ T + Sbjct: 61 QV---LETLTVETELSVAITLMVALPKGNGFDDIIRYSTELGVTCIAPLLSDRTLLNPSP 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R AAEQ + +P I P + + + + C L Sbjct: 118 QKLERWRRIATEAAEQSERAFVPTILEPVSFMTAINASQATHRYI-----CEGRGDYPHL 172 Query: 182 HAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +++ IP + I GPEGG+ E E + F P+SLG RILR+ TA V A+ L+ A Sbjct: 173 NSLVKTDIPEIIIATGPEGGWTEPEIENAIASGF-QPVSLGRRILRAVTAPVVALTLISA 231 >gi|322390789|ref|ZP_08064299.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321142459|gb|EFX37927.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 247 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 98/245 (40%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGLASSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEARKL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+++ QK E+G I V + Sbjct: 60 ELIEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L +D +IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSITLFEKKADFLAQFDQFDRIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ L + + + GPEGG E ++ + V LGPRILR++TA + A++ Sbjct: 180 LIQSLTGLEAGCKLLFIFGPEGGLSPAEIKSFTAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSVVT 243 >gi|28211650|ref|NP_782594.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium tetani E88] gi|28204092|gb|AAO36531.1| conserved surface protein [Clostridium tetani E88] Length = 250 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 10/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV + + ++ VLR+ D +++ N + E+L +ISY+ K Sbjct: 1 MHKFFVPKENISNEKAIILDEDVKHIYKVLRLTTEDEVIINNCEGEEFLGEISYIDKKEV 60 Query: 67 FKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 + +S +Q K N++D ++QK+ E+G+ I PVIT Sbjct: 61 IVNIKEKLDINNESSIQVYLFQGMPKANKMDLIVQKNCELGVREITPVITERVVVKQYGG 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--S 177 +DR+ I +++QC +P + P + LL+ IV E Sbjct: 121 EYKKLDRLEKIAIESSKQCKRTLIPKVNNPVEFKDLLEELKIMDLIVVPYENQQGFGMKK 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L I + ++IGPEGG+ +E E L + ++LGPRILR++TA A++L+ Sbjct: 181 LITKIEKNKIIKIGVVIGPEGGFEEDEIEELEKIG-ANIITLGPRILRTETAGFTAVSLL 239 Query: 238 QAICGD 243 GD Sbjct: 240 MYELGD 245 >gi|332074131|gb|EGI84609.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA41301] Length = 247 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 ++ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELIQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAITGLDTGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|254467996|ref|ZP_05081402.1| conserved hypothetical protein TIGR00046 [beta proteobacterium KB13] gi|207086806|gb|EDZ64089.1| conserved hypothetical protein TIGR00046 [beta proteobacterium KB13] Length = 247 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 119/247 (48%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R + + ++ S D +L LR+K D I+LFNG ++ ++S + K + Sbjct: 2 MNRFYHPDTISAHSEINLSEDASKHLVKSLRLKPSDKIILFNGDGFDYHGEVSDIDKKNV 61 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 + V + + ++ D+ + S ++LD++ QK+ E+G+ + T Sbjct: 62 KIAVNEKKHNASEAVIDISILQSVTSRDKLDFIFQKNTELGIKNFYLINTERVNFKIPQS 121 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++ ++ ISA EQ +P ++ L L DH+C+++ T S ++ Sbjct: 122 KIENRIEHLKKVVISACEQSGRSKIPTVHETILGLNKLTNEDDHSCKLILNPYTDYSLSN 181 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + + + ILIGPEGG+ E + + F LSLG R+LR++TA+++ + + Sbjct: 182 LRN-NDLINKKSFQILIGPEGGFSEAEIKVAENAGF-KSLSLGKRVLRTETASLSIASAI 239 Query: 238 QAICGDW 244 A+ ++ Sbjct: 240 LALTNNF 246 >gi|149002075|ref|ZP_01827029.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP14-BS69] gi|303254708|ref|ZP_07340810.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455] gi|303258717|ref|ZP_07344697.1| hypothetical protein CGSSp9vBS293_06299 [Streptococcus pneumoniae SP-BS293] gi|303261881|ref|ZP_07347827.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae SP14-BS292] gi|303263744|ref|ZP_07349666.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae BS397] gi|303265722|ref|ZP_07351621.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae BS457] gi|303268575|ref|ZP_07354367.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae BS458] gi|147759884|gb|EDK66874.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP14-BS69] gi|301802477|emb|CBW35235.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302598420|gb|EFL65464.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455] gi|302636964|gb|EFL67453.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae SP14-BS292] gi|302640218|gb|EFL70673.1| hypothetical protein CGSSpBS293_06299 [Streptococcus pneumoniae SP-BS293] gi|302641854|gb|EFL72209.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae BS458] gi|302644849|gb|EFL75097.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae BS457] gi|302646782|gb|EFL77007.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae BS397] Length = 247 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|319901365|ref|YP_004161093.1| hypothetical protein Bache_1502 [Bacteroides helcogenes P 36-108] gi|319416396|gb|ADV43507.1| protein of unknown function DUF558 [Bacteroides helcogenes P 36-108] Length = 232 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV-EYQSRS 75 I+ + + ++ + VLR++ GD ++L +G + ++I + GK K+ E + Sbjct: 9 IEIRSELPEEEAAHAIRVLRLQTGDEVMLTDGNGNFYRAEISTATGKRCSVKIIETLPQE 68 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ ISA Sbjct: 69 PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILISA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + + + C + L I + +LI Sbjct: 129 IKQSLKARLPKLNEMTDFNNFITRPFEGQKFIAH---CHEDEKLLLKEQIRKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + F+ P+SLG LR++TAA+ A ++ Sbjct: 186 GPEGDFSEEEVKKALKNGFI-PISLGKSRLRTETAALVACHILN 228 >gi|289167412|ref|YP_003445681.1| hypothetical protein smi_0564 [Streptococcus mitis B6] gi|288906979|emb|CBJ21813.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 247 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+K D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVIIE-DKETSKHMFQVMRLKGEDEVTLVFDDGIKRLARVLDVENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELTDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P + L +D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSVKLFEKKADFLAQFDQFDSIIVAYEESAKEGEVAV 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + +A + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLAKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|322373766|ref|ZP_08048301.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150] gi|321277138|gb|EFX54208.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150] Length = 247 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ D ++ +V+R+ E D ++L + L++++ + Sbjct: 1 MQQYFIRG-QVENPVIIKDKDTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHVF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+ + QK+ E+G AI V+ + Sbjct: 60 EVIEDLTDNVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 D++ + AAEQ +P + L + +I A E L Sbjct: 120 AKKEDKLAKIALGAAEQSKRNHVPEVRLFEEKGEFLSELANFDKIFIAYEETAKAGELAT 179 Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + H + + GPEGG E + V + LGPRI+R++TA + A++ Sbjct: 180 LARELAQVEHGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|329962100|ref|ZP_08300111.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057] gi|328530748|gb|EGF57606.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057] Length = 232 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQS 80 + ++ + VLR++ GD + L +G + ++IS F VE + + Sbjct: 14 ELPEEEAAHAVRVLRLQAGDEVTLTDGNGNFYRAEISTATNKRCFVNIVETLPQPALWDA 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q Sbjct: 74 HLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 LP + T + ++ I E G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMTDFNKFITQPFEGQKFIAHCYE--GEKPLLKDI--LHKGEDALVLIGPEG 189 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE +T + ++ P+SLG LR++TAA+ A ++ Sbjct: 190 DFSEEEVKTALANGYI-PISLGRSRLRTETAALVACHILN 228 >gi|76787751|ref|YP_330523.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae A909] gi|77405013|ref|ZP_00782113.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae H36B] gi|77411955|ref|ZP_00788285.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae CJB111] gi|76562808|gb|ABA45392.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae A909] gi|77161981|gb|EAO72962.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae CJB111] gi|77176307|gb|EAO79076.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae H36B] Length = 246 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 12/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + D ++ +V+R+ E D ++L + L+K+ Sbjct: 1 MQQYFVNGKADDFVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDTIKRLAKVVDSSAHRF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + V K ++LD + QK+ E+G AI V+ + Sbjct: 60 QILEELDSNVEMPVQVTIASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 D++ + AAEQ LP + + +I A E E Sbjct: 120 AKKEDKLAKIAMGAAEQSKRNRLPQVRLFEKKADFQAELNGFDKIFIAYEESAKEGEMSA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + + + GPEGG +E + + LGPRI+R++TA + A+++ Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEAGAIK-VGLGPRIMRTETAPLYALSV 238 Query: 237 VQA 239 + Sbjct: 239 ISY 241 >gi|307707510|ref|ZP_07643992.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307616462|gb|EFN95653.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] Length = 247 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+ + V Sbjct: 1 MQQYFVKGNATSPVIIE-DKETSKHMFQVMRLKEDDEVTLVFDDGVKRLAHVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D +IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSIKLFEKKGDFLAQLDQFDRIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ ++ + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVNGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|148990495|ref|ZP_01821636.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae SP6-BS73] gi|147924253|gb|EDK75349.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae SP6-BS73] Length = 247 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|298209191|ref|YP_003717370.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus HTCC2559] gi|83849118|gb|EAP86987.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus HTCC2559] Length = 235 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 6/239 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ + + D+ ++ VLR K GD + + NGK + +I + Sbjct: 1 MQLFYQEHIDNKSINVHFERDESKHIVKVLRKKAGDTLHVTNGKGWLFTVEIISDNHNKC 60 Query: 67 FKVEYQSRSQTKQS-DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 V + + Q Q + + +P K +R+++ ++K+ E+G+ I P++ +++ Sbjct: 61 VGVITEKKYQESQQLYLHVLIAPTKMNDRMEWFLEKATEIGISEITPILCDHSERKTIKT 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DR SA +Q L LP + T ++ + V E ++ Sbjct: 121 DRFERVLQSAMKQSLQLHLPKLNALTPFSEVIGQNIEGQKFVAHCENDKKRLPMQNEITS 180 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + ILIGPEG + EE + ++ P++LG LR++TA + A + D Sbjct: 181 ---NRLTILIGPEGDFSLEEIQQALDYNWL-PVTLGNTRLRTETAGIVATTIANLKFTD 235 >gi|282896925|ref|ZP_06304931.1| conserved hypothetical protein [Raphidiopsis brookii D9] gi|281198334|gb|EFA73224.1| conserved hypothetical protein [Raphidiopsis brookii D9] Length = 262 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L+RL + + Q + Q HYL VLR+++GD + +G WL+K++ Sbjct: 1 MAQLQRLTIQISQLQQNQVLLTPKQKHYLLRVLRLQDGDQFISMDGMGKWWLTKLTADTA 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 I ++ + + I + K N D +++ S E+G+ +I PV++ T + Sbjct: 61 QI---LQTLTPKTELPLSITLILALPKGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSP 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R AAEQ + +P I P L + + + E GS L + Sbjct: 118 QKLERWRRIAKEAAEQSERAFVPTILEPVAFSTALSEYSNFKCYIC--EARGSYPHLINI 175 Query: 182 HAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I I V I IGPEGG+ E T F P+SLG RILR+ TA + A++L+ A Sbjct: 176 INIPLKDIKEVVIAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSLIAA 234 Query: 240 IC 241 C Sbjct: 235 AC 236 >gi|149020848|ref|ZP_01835377.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP23-BS72] gi|168483305|ref|ZP_02708257.1| protein YqeU [Streptococcus pneumoniae CDC1873-00] gi|225857376|ref|YP_002738887.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae P1031] gi|147930489|gb|EDK81472.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP23-BS72] gi|172043230|gb|EDT51276.1| protein YqeU [Streptococcus pneumoniae CDC1873-00] gi|225726153|gb|ACO22005.1| protein YqeU [Streptococcus pneumoniae P1031] Length = 247 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-NKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E G E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLTQLDQFDSIIVAYEESGKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|332199792|gb|EGJ13867.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA41317] Length = 247 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-NKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDFIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|295695881|ref|YP_003589119.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912] gi|295411483|gb|ADG05975.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912] Length = 247 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 9/230 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++R V + G+ H++A V+RM GD + + +G W + I VG + Sbjct: 1 MQRYLVPPSCFVGDTAVLRGEDAHHIARVMRMVPGDRVEVGDGSGTVWTAVIESVGAGEV 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E + ++ + K +++D ++QK+ E+G+ + PV + Sbjct: 61 HLSLEDSLEEDGEARLELVLLQGLPKHDKMDLIVQKATELGVARVIPVAAARSVVRYQED 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R R AAEQ +P I P + + + DE+ Sbjct: 121 QEIRRLQRWRRIAKEAAEQAKRSRIPEIVQPVSAAEAWRWAAQADVALIFDESRRGRPLA 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + + +GPEGG+ E + SL V P+ LGPRILR++T Sbjct: 181 TALAGHPGVGRIFFAVGPEGGWDPGEVDDATSLG-VEPVHLGPRILRTET 229 >gi|187477367|ref|YP_785391.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella avium 197N] gi|115421953|emb|CAJ48473.1| conserved hypothetical protein [Bordetella avium 197N] Length = 244 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 10/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R F D PL + H+ VLR+++G I+LF+G+ GE+ +++ GK+ Sbjct: 3 LPRFFCDTPLAAGQRLALPEALAHHAIRVLRLRDGAVIVLFDGRGGEYPARLEIEGKTGY 62 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ E+ +R + +++D++I+K+VE+G A+ P+ + + Sbjct: 63 AQLAEHVAREAELPGRITLAQGLPSGDKMDWIIEKAVELGAAAVAPIAAQRSVLQLSGPR 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + R +AAEQC L + P++L L +++ E Sbjct: 123 LEKRLSHWRRIAQAAAEQCGRNRLTQVSAPSSLREWLAQPAQGARVMCHPEAADDLPGW- 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + + +L+GPEGG+ E + V + LG R+LR++TA +A +A V A Sbjct: 182 -LASQPAPEALTLLVGPEGGWSEE-ELAAARAAGVASVRLGSRVLRTETAGLALIASVTA 239 Query: 240 ICG 242 + G Sbjct: 240 LLG 242 >gi|326559952|gb|EGE10350.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 46P47B1] gi|326565441|gb|EGE15613.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 103P14B1] gi|326572795|gb|EGE22781.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis BC7] gi|326573982|gb|EGE23931.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis CO72] gi|326577050|gb|EGE26945.1| ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis 101P30B1] Length = 246 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 18/237 (7%) Query: 7 LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R FVD PL I H+ VLR GD LF+G GE+ ++++ Sbjct: 1 MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60 Query: 63 KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118 KS K++ Y ++T + +R+DY IQK+ EMG+ I + + Q Sbjct: 61 KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120 Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + ++ ++A EQC + +P I P L+ + N ++V A + Sbjct: 121 KYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + KL N+++LIG EGG E + FV P +G R+LR++TA V Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVV 230 >gi|167765138|ref|ZP_02437251.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC 43183] gi|167696766|gb|EDS13345.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC 43183] Length = 232 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 I++Q + ++ + VLR++ GD + L +GK + ++IS ++ Q Sbjct: 9 IQSQAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATTKRCLVNILETIPQA 68 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA Sbjct: 69 PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +Q LP + T + + A G + L+ + + + +LI Sbjct: 129 IKQSLKARLPRLNGMTDFNRFISQ-PFEGRKFIAHCYEGEKPLLKDV--VRKGEDALVLI 185 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 GPEG + EE + F P+SLG LR++TAA+ A ++ Sbjct: 186 GPEGDFSEEEVKQAIENGF-EPISLGRSRLRTETAALVACHILN 228 >gi|331265876|ref|YP_004325506.1| hypothetical protein SOR_0503 [Streptococcus oralis Uo5] gi|326682548|emb|CBZ00165.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 247 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSATSPITIE-DKETSKHMFQVMRLKEDDEVTLVFEDGIKRLARVLDVENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ T+ AAEQ +P I L D IV A E E Sbjct: 120 GKKVEKLEKITLGAAEQSKRNLVPSIKLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|255533946|ref|YP_003094318.1| hypothetical protein Phep_4065 [Pedobacter heparinus DSM 2366] gi|255346930|gb|ACU06256.1| protein of unknown function DUF558 [Pedobacter heparinus DSM 2366] Length = 234 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 6/224 (2%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEY 71 P + ++ + VLR+ G + L +G G + ++I+ K +E Sbjct: 6 TPDIGSDVYVLNEEESRHCTRVLRLGTGAVVYLIDGIGGLYKAEITGETKRQVNLRIIEV 65 Query: 72 QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY 130 Q ++ + +P K +RL++ ++K+ E+G+ I PVI ++ DR+ Sbjct: 66 QKEYHKRRHYLHIAVAPTKNIDRLEWFLEKATEIGIEEITPVICDRSERKVVKEDRLNKV 125 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 +A +Q P + P +L LK + + +++ + + + + + Sbjct: 126 ITAAVKQSLQAYHPRLNPQISLSAFLKQKNDSLKMIAHCVDAAARQYISDV--VKPAGSY 183 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ILIGPEG + +E E + PL+LG LR++TAA+AA Sbjct: 184 TILIGPEGDFTGQEIEMALQSGY-KPLTLGNTRLRTETAALAAC 226 >gi|148997824|ref|ZP_01825388.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP11-BS70] gi|168575040|ref|ZP_02721003.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|307068392|ref|YP_003877358.1| hypothetical protein SPAP_1772 [Streptococcus pneumoniae AP200] gi|147756323|gb|EDK63365.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP11-BS70] gi|183578834|gb|EDT99362.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|306409929|gb|ADM85356.1| Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae AP200] Length = 247 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-NKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|325105650|ref|YP_004275304.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145] gi|324974498|gb|ADY53482.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145] Length = 236 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 6/234 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 + + + ++ + + VLR+K GD I L +G G +L +I K + Sbjct: 4 FYTPDLNFEENVYVLNEEESRHCSKVLRLKIGDRIHLVDGIGGFYLGEIIEDHPKRTKLT 63 Query: 69 VEYQSRSQTK-QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + + K + +P K +R+++ ++K+ E+G+ + PVI +++ +R Sbjct: 64 IVSKEKDFNKVAFHLHIAIAPTKNIDRIEWFLEKATEIGIQEVTPVICEHSERKDVKTER 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + +SA +Q LP + P T + L+ + + A + + + Sbjct: 124 LEKIMVSAMKQSLKAYLPKLNKPQTFKSLISSVGSDVHKYIAHCIPTEKREIA--DSFKR 181 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 ILIGPEG + +E + FV P++LG LR++TAA+ A + + Sbjct: 182 EEKYLILIGPEGDFSEKEVQIALENGFV-PITLGKSRLRTETAALQACFEINYL 234 >gi|227529148|ref|ZP_03959197.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis ATCC 49540] gi|227350992|gb|EEJ41283.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis ATCC 49540] Length = 251 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 14/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R F+D + + H+L VLR G L +L+++ + G Sbjct: 1 MQRYFIDQSKTAG-KVILPEEVAHHLVTVLRAAVGTKFELVMADHQAYLAELISITPGNV 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I +E + K + + ++QK E+G I + Sbjct: 60 IAKLIENLGKDSELPVKTILACGLPKTKEKPELIVQKGTELGADKIVFFEAERSISHWNS 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Q + R++ +AAEQ P I +L+ LL N+ ++V +E+ S Sbjct: 120 QKQPRKIARLQKIADAAAEQSHRNVKPQIEYCPSLKQLLANYPATIRLVAWEESAKEGES 179 Query: 178 LEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 A+A + ++ + GPEGG S E + + P+ GPRILR++TA + + Sbjct: 180 SRLFQALAKLQTGDSILAIFGPEGGLSSAEVTIMEENG-IIPVGFGPRILRTETAPLYFL 238 Query: 235 ALVQAIC 241 A V + Sbjct: 239 ATVSFVT 245 >gi|148994979|ref|ZP_01823957.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae SP9-BS68] gi|168488515|ref|ZP_02712714.1| protein YqeU [Streptococcus pneumoniae SP195] gi|147926916|gb|EDK77963.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae SP9-BS68] gi|183572849|gb|EDT93377.1| protein YqeU [Streptococcus pneumoniae SP195] gi|332072601|gb|EGI83084.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA17570] Length = 247 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLTQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|257059193|ref|YP_003137081.1| hypothetical protein Cyan8802_1323 [Cyanothece sp. PCC 8802] gi|256589359|gb|ACV00246.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8802] Length = 239 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 10/234 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RL ++ + + +Q HYL VLR+K GD + +G+ +L+++ I Sbjct: 1 MYRLVIESIQTLDQSVSLTPEQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEEDSAKI- 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124 ++ + + + K N + +++ E+G+ + P+I++ T + + + + Sbjct: 60 --LQNLKECTELPLAITLMVALPKGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKL 117 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEKLH 182 +R R A EQ + +P I P L+N D + + + + L L Sbjct: 118 ERWRKIATEAGEQSERQLIPTIVDPIVFNEALRNIDKIPSDRYICVTRKKA-HHLLTHLS 176 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + P + I G EGG+ EE ET + F P++LGPRILR+ TA + A++L Sbjct: 177 ETSQNP-LVIATGCEGGWTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSL 228 >gi|225859537|ref|YP_002741047.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae 70585] gi|225720580|gb|ACO16434.1| protein YqeU [Streptococcus pneumoniae 70585] Length = 247 Score = 218 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A+ Sbjct: 180 LLQAVSGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALTA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|169829246|ref|YP_001699404.1| hypothetical protein Bsph_3794 [Lysinibacillus sphaericus C3-41] gi|168993734|gb|ACA41274.1| UPF0088 protein [Lysinibacillus sphaericus C3-41] Length = 245 Score = 218 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 19/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 ++R F++ + + SG+ ++ V+RMK+GD I++ ++ + KI+ + G + Sbjct: 1 MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIIVV-AQNIAHICKITGFEGDEV 56 Query: 66 RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ S + K ++L+ + QK+ E+GM A+ P + + Sbjct: 57 AIDATGETIPSSELPIQITVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDKK 116 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R++ AAEQ +P +Y P T + LL++ D + ADE Sbjct: 117 KGAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLQDIDQFDAVFIADEEDAKAEKR 176 Query: 179 ------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 KL + ++ I+ GPEGG +E E L T +SLGPRILR++TA + Sbjct: 177 TRFADKLKLVHEKKLTSILIIFGPEGGISRKEAEALLQAGAQT-MSLGPRILRAETAPLY 235 Query: 233 AMALVQAIC 241 A++ + Sbjct: 236 ALSAISYEF 244 >gi|168494311|ref|ZP_02718454.1| protein YqeU [Streptococcus pneumoniae CDC3059-06] gi|225855212|ref|YP_002736724.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae JJA] gi|183575734|gb|EDT96262.1| protein YqeU [Streptococcus pneumoniae CDC3059-06] gi|225723849|gb|ACO19702.1| protein YqeU [Streptococcus pneumoniae JJA] Length = 247 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGSKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|75911238|ref|YP_325534.1| 16S ribosomal RNA methyltransferase RsmE [Anabaena variabilis ATCC 29413] gi|75704963|gb|ABA24639.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 235 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S L+R+ + + Q + Q HYL VLR++EGD ++ +G WL++++ Sbjct: 1 MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLARLTEEQA 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +E + + + + K + D +++ E+G+ I PV++ T + Sbjct: 61 QV---LEELAVKTELPVAITLMIALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSP 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R AAEQ + +P I P + N + + E G L+ L Sbjct: 118 QKLERWRRIAAEAAEQSERAFVPTILEPVAFSDAVNNVTAFHRYIC--EARGEYVHLQNL 175 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + I IGPEGG+ +E E + F P+SLG RILR+ TA + A++L+ A C Sbjct: 176 LTDISGE-IVIAIGPEGGWTDKELEEAVTFGF-QPVSLGGRILRAVTAPLVALSLISAAC 233 >gi|149280553|ref|ZP_01886669.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39] gi|149228668|gb|EDM34071.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39] Length = 234 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 6/224 (2%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEY- 71 P T+ + ++ + VLR+ GD + L +G+ G + ++I GK ++ +V + Sbjct: 6 TPDIDATEYLLNEEESKHCLKVLRLGVGDVVNLIDGRGGFYEAEIIEAGKRNVKLRVTHA 65 Query: 72 QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY 130 + Q + + +P K +RL++ ++K+ E+G+ I P++ ++ DR+ Sbjct: 66 RQEFQKRNHHLHIAIAPTKNIDRLEWFLEKATEIGIDEITPLLCERSERKIVKEDRLFKV 125 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 SA +Q P + P T++ L+ + +++ + ++ I Sbjct: 126 ITSAVKQSLQAYHPVLNPLTSMSDFLRQENDTFKMIAHCIDGVPREYISEV--IQPQGRY 183 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ILIGPEG + +E + + PL+LG LR++TAA+AA Sbjct: 184 TILIGPEGDFSEKEIQHALQSGY-KPLTLGNTRLRTETAALAAC 226 >gi|317057269|ref|YP_004105736.1| hypothetical protein Rumal_2627 [Ruminococcus albus 7] gi|315449538|gb|ADU23102.1| protein of unknown function DUF558 [Ruminococcus albus 7] Length = 241 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ G ++ LRM+ GD + + + ++ ++ V Sbjct: 1 MPRFFVNKEDINGDSAVVRGADAVHIGRSLRMRLGDELTVC-CEGKDYTCRLDSVSDEQC 59 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + S V + K+++L+ ++QK+VE+G I PV+T + Sbjct: 60 GLAVLSVSEGSGEPTVRVTLYQAVPKSDKLELIVQKAVELGAAEIVPVLTSRCVSRPDEK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + +R+ + AA+QC +P + + E K + + E G+ S Sbjct: 120 SYRKKRERLNKIALEAAKQCGRSIVPTVGDIISAEECAKRLGEHELGLICYEKGGAPLS- 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ I IG EGG+ E + + + +GPRI+R +TA +AA+A+V Sbjct: 179 --ETVGRECRDIGIFIGSEGGFDEAEVDKCRAEG-AKVIGMGPRIMRCETAPLAAIAVVM 235 Query: 239 AICG 242 ++ G Sbjct: 236 SLTG 239 >gi|307705458|ref|ZP_07642313.1| RNA methyltransferase family protein [Streptococcus mitis SK597] gi|307620993|gb|EFO00075.1| RNA methyltransferase family protein [Streptococcus mitis SK597] Length = 247 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGIAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVETRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGARQIWAFPADWSVAKWDDKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P + L D ++V A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSVTLFEKKAAFLAQLDQFDRVVVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|223934148|ref|ZP_03626091.1| protein of unknown function DUF558 [Streptococcus suis 89/1591] gi|223897189|gb|EEF63607.1| protein of unknown function DUF558 [Streptococcus suis 89/1591] Length = 248 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F++ + D ++ V+R++ + I+L + L+++ Sbjct: 1 MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDDGIKRLARVVDSQNQSV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E S + V K ++L+++ QK+ E+GM A+ V+ + Sbjct: 61 EIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKL 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----N 176 +++ AAEQ +P + L QI+ A E E N Sbjct: 121 GKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLAGFDQIILAYEEAAKEGEQAN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ L + +V +++GPEGG EE V LGPRILR++TA + A++ Sbjct: 181 LVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSA 239 Query: 237 VQAIC 241 + Sbjct: 240 ISYAT 244 >gi|198274982|ref|ZP_03207514.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135] gi|198272429|gb|EDY96698.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135] Length = 233 Score = 218 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I + ++ + VLR+ G+ I L +GK + + IS K KV ++ + Sbjct: 9 IAQTMELPEEEAGHCLRVLRLGVGEEITLTDGKGCFYRAVISAATQKRCVVKVVEKTEQE 68 Query: 77 T-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K +R++++ +K+ E+G + + R+++ +RV +SA Sbjct: 69 PFWKGHLHLALAPTKNMDRMEWLAEKATEIGFDELTFLNCRFSERKVIKTERVEKIVVSA 128 Query: 135 AEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q P + T ++ + I E G + L + + + +L Sbjct: 129 VKQSLKARKPVVNEMTDFRRFMEREFTGQKFIAHCYE--GEKPLLRDV--LRKDEDAVVL 184 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 IGPEG + EE F +SLG LR++TAA+ A+ L+ Sbjct: 185 IGPEGDFSPEEVALAAEKGF-QAVSLGKSRLRTETAALVAVHLMN 228 >gi|293384704|ref|ZP_06630559.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712] gi|293387404|ref|ZP_06631959.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613] gi|312908310|ref|ZP_07767274.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 512] gi|312910616|ref|ZP_07769458.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 516] gi|291078011|gb|EFE15375.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712] gi|291083195|gb|EFE20158.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613] gi|310625724|gb|EFQ09007.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 512] gi|311289164|gb|EFQ67720.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO 516] Length = 245 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D+ L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|22538104|ref|NP_688955.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae 2603V/R] gi|25011993|ref|NP_736388.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae NEM316] gi|76799724|ref|ZP_00781818.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] gi|77412896|ref|ZP_00789100.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 515] gi|22535010|gb|AAN00828.1|AE014280_20 conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 2603V/R] gi|24413536|emb|CAD47614.1| Unknown [Streptococcus agalactiae NEM316] gi|76584921|gb|EAO61585.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] gi|77161036|gb|EAO72143.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 515] Length = 246 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 12/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + D ++ +V+R+ E D ++L + L+K+ Sbjct: 1 MQQYFVNGEAGAYVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + V K ++LD++ QK+ E+G AI V+ + Sbjct: 60 QILEELDNNVEMPVQVTIASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 D++ + AAEQ LP + +I A E E L Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELAGFDKIFIAYEESAKEGELSA 179 Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + + + GPEGG +E + + + LGPRI+R++TA + A+++ Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSV 238 Query: 237 VQA 239 + Sbjct: 239 ISY 241 >gi|169834515|ref|YP_001695156.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae Hungary19A-6] gi|168997017|gb|ACA37629.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] Length = 247 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKEASKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|229545442|ref|ZP_04434167.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX1322] gi|229549686|ref|ZP_04438411.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC 29200] gi|307268138|ref|ZP_07549525.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248] gi|307275914|ref|ZP_07557047.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134] gi|307277697|ref|ZP_07558783.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860] gi|307295909|ref|ZP_07575741.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411] gi|312900878|ref|ZP_07760172.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470] gi|312902754|ref|ZP_07761958.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635] gi|312951285|ref|ZP_07770186.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102] gi|229305166|gb|EEN71162.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC 29200] gi|229309358|gb|EEN75345.1| protein of hypothetical function DUF558 [Enterococcus faecalis TX1322] gi|306496240|gb|EFM65819.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411] gi|306505576|gb|EFM74760.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860] gi|306507244|gb|EFM76381.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134] gi|306515528|gb|EFM84056.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248] gi|310630721|gb|EFQ14004.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102] gi|310633808|gb|EFQ17091.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635] gi|311291977|gb|EFQ70533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470] gi|315028901|gb|EFT40833.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4000] gi|315034530|gb|EFT46462.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0027] gi|315152591|gb|EFT96607.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0031] gi|315157276|gb|EFU01293.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0043] gi|315159889|gb|EFU03906.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0312] gi|315161371|gb|EFU05388.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0645] gi|315163668|gb|EFU07685.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1302] gi|315169384|gb|EFU13401.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1342] gi|315174316|gb|EFU18333.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1346] gi|315576685|gb|EFU88876.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0630] gi|329568734|gb|EGG50534.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1467] Length = 245 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|315147638|gb|EFT91654.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4244] Length = 245 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPNVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|301301218|ref|ZP_07207374.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851217|gb|EFK78945.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 243 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 15/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R F D I T+ + + + Y ++ VLRMK GD L + + +I+ + GK+ Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHVIKVLRMKVGDAFELVDDAEVVHKMEITKIEDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE S+V K ++ D+++QK EMG I Y+ + Sbjct: 59 EATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWDRK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ SAAEQ +P + L+ + +++ N + A E + Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKDI--DFEKNDARIVAYEESAKKGES 176 Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L I ++ + GPEGG +E E L + F+ LGPRI+R++TA + +A Sbjct: 177 GNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLAS 235 Query: 237 VQAIC 241 + Sbjct: 236 LSFAL 240 >gi|197116640|ref|YP_002137067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter bemidjiensis Bem] gi|197086000|gb|ACH37271.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter bemidjiensis Bem] Length = 246 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ F+ +G+ Y ++A VLR+K+G + L D + VG KS+ Sbjct: 1 MRSFFLGDNAICGDSVTITGELYRHMARVLRIKQGSEVELIEDGDSRHRGTVEEVGAKSL 60 Query: 66 RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117 ++ + ++ + + K +LD ++QK E+G+ + R V+ Sbjct: 61 TVRISASAAPAAEEPGLRITLLQGMPKGEKLDLILQKCTELGVAEVVAFDAARSVVKLRG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R AA Q + P + TL +L + H +++ E Sbjct: 121 DRSATRLARYEKIVREAARQSGRRSAPKVALGGTLADVLADSHHEVKLLL-YEGEEKTTL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A +VA+++GPEGG EE + F TP++LG RILR++TA +A ++++ Sbjct: 180 HGCFGAFEAPESVAVVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSIL 238 Query: 238 QAICGD 243 Q GD Sbjct: 239 QFHWGD 244 >gi|15901610|ref|NP_346214.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae TIGR4] gi|111657308|ref|ZP_01408070.1| hypothetical protein SpneT_02001479 [Streptococcus pneumoniae TIGR4] gi|116515693|ref|YP_817025.1| hypothetical protein SPD_1572 [Streptococcus pneumoniae D39] gi|149006564|ref|ZP_01830263.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae SP18-BS74] gi|14973278|gb|AAK75854.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] gi|116076269|gb|ABJ53989.1| conserved hypothetical protein TIGR00046 [Streptococcus pneumoniae D39] gi|147761862|gb|EDK68825.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae SP18-BS74] gi|332072939|gb|EGI83420.1| ribosomal RNA small subunit methyltransferase E [Streptococcus pneumoniae GA17545] Length = 247 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|332364548|gb|EGJ42319.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK355] Length = 250 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+K GD + L + L ++ + Sbjct: 1 MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKAGDQVTLVFDDGVKRLVQVLDPSQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK E+G A+ V + Sbjct: 59 LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGACALWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L +I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAALADFDRIIVAYEESAKEGETA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG +E V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLESGAKVLFIFGPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|190571358|ref|YP_001975716.1| hypothetical protein WPa_0963 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018754|ref|ZP_03334562.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357630|emb|CAQ55071.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995705|gb|EEB56345.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 231 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 RL+V+ L Q HY+ +V+R+K+ DNI LFNGKDGEWL ++ + KS + Sbjct: 5 RLYVEEALSQNVSLALHPRQSHYIYNVMRLKKHDNIYLFNGKDGEWLGEVVNISSKSTKI 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ +++ Q + ++ + +K+ L +++++ EMG+ I+ + T T + N+ R Sbjct: 65 IIKERTKQQQHEKNLYLYCALVKSGALSNIVRQATEMGVTCIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ ++P I+ P L + + N V DET + + L Sbjct: 125 KLQAIEAAEQSGRTSIPQIFLPINFCELSDSQNKN--FVLCDETGEGQPPNKVL---KGK 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 NVAI++GPEGG+ S E ++ F LSLG RILR DTA VAA+ Sbjct: 180 KNVAIIVGPEGGFSSCELDSA--NKFCQKLSLGKRILRVDTAVVAALT 225 >gi|312867956|ref|ZP_07728160.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis F0405] gi|311096360|gb|EFQ54600.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis F0405] Length = 247 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGLASSPITIE-DKETSKHMFQVMRVKEEDEVTLVFDDGIKRLARVVNVEGRQL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D +IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSITLFEKKSDFLAQLDQFDRIVVAYEESAKEGEVAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ L + + ++ GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LIQSLTGLEAGCKLLLIFGPEGGLSPAEIESFTAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSVVT 243 >gi|221632371|ref|YP_002521592.1| hypothetical protein trd_0341 [Thermomicrobium roseum DSM 5159] gi|221155488|gb|ACM04615.1| conserved hypothetical protein TIGR00046 [Thermomicrobium roseum DSM 5159] Length = 265 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 12/241 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIR 66 R FV L + + H L VLR++ GD +LL +G+ ++++++ + +++ Sbjct: 7 RFFVTEHLELGARVTLPRRVSHQLVRVLRLRPGDRVLLCDGRAIDFVAELIELDPERTVA 66 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 V+ Q + + + ++ + D +++K+ E+G+ I P+ T+ T + Sbjct: 67 VLVDAQPARPLPPPPIVLLQALLRHDHFDLVVEKATELGIVRIVPLHTQRTVVHLALRDV 126 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R + + A+EQC TLP I P+TL+ L +VF + E Sbjct: 127 TQRLARWQRIAMEASEQCGRGTLPEIDTPSTLDRALATVRTARLLVFWE---APEAEAIA 183 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + V + +GPEGG+ +EE SLGP ILR++TAA++ +A VQA Sbjct: 184 HASFSPDQTVTVAVGPEGGWTAEEIALFRRHGAEFR-SLGPLILRAETAAISGIAAVQAR 242 Query: 241 C 241 Sbjct: 243 T 243 >gi|299138336|ref|ZP_07031515.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8] gi|298599582|gb|EFI55741.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8] Length = 235 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 10/228 (4%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 T +GDQ +LA VLR + G + ++I+ V S ++ Sbjct: 13 DTTASLTGDQAAHLARVLRAEPGQIFDVV-ANGFLHRAEITSVSDSEVVFTLHEELEADA 71 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133 V + + K + +++ I+K+ E+G I PV+ R T+ ++R R Sbjct: 72 ALPVHLLLAVFKFDHMEWGIEKATELGAERITPVLARRTEKHLSQAAAKRVERWRRIVRE 131 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 AA+Q +P + P TL+ L++ +++ A+ EN++ A +VA+ Sbjct: 132 AAQQSRRSDVPTVDDPQTLKAALQSVSAETKLLLAE--TEQENTIAAALQQAS-QSVALA 188 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +GPEGG+ EE + + ++LGPRILR++TAA+A +A+ A+ Sbjct: 189 VGPEGGWTPEEMQLFTEHGWKH-VTLGPRILRAETAAIAGLAICSALL 235 >gi|304437370|ref|ZP_07397329.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369626|gb|EFM23292.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 247 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++++F L +G H+LA V+R + GD I + + ++ + + + Sbjct: 1 MRQVFYPGVLTED--IAITGGDAHHLARVMRAQIGDVITVVDAAGQAAEMAVTELARDAV 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 +++ +T+ +V + + +K ++D+++QK+ E+G + P++T + + Sbjct: 59 HLRMQRVLPVETEGREVILVQALLKGEKMDFVVQKAAELGAVCVCPIVTEHVVVRYDAKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCGSE 175 T R + AA+QC L + P +L LL++ + VF E + Sbjct: 119 TAVKAARWQKIADEAAKQCGRRMLMRVAPIVSLTELLRDPAYIDAADTATVFCYEQEERQ 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L V +++G EGG+ E + + +SLG RILR++TA++ A+A Sbjct: 179 SMRTVLRG-TEARRVTLIVGAEGGFSPAEATAVTAAGG-QSVSLGHRILRAETASLTALA 236 Query: 236 LVQAICG 242 + Q G Sbjct: 237 VTQYELG 243 >gi|315149224|gb|EFT93240.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0012] Length = 245 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|126652831|ref|ZP_01724976.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905] gi|126590367|gb|EAZ84487.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905] Length = 245 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 19/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65 ++R F++ + + SG+ ++ V+RMK+GD I++ ++ + I+ + G + Sbjct: 1 MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIVVV-AQNIAHICTITGFEGDEV 56 Query: 66 RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ S + K ++L+ + QK+ E+GM A++P + + Sbjct: 57 VVDATGETIPSSELPIQITVACGLPKGDKLELITQKATELGMFALQPFEAERSIVKWDKK 116 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R++ AAEQ +P +Y P T + LL D + ADE Sbjct: 117 KGAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLHEIDQFDAVFIADEEDAKAEKR 176 Query: 179 EKLHA------IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + ++ I+ GPEGG +E E L T +SLGPRILR++TA + Sbjct: 177 TRFADKLRLVHDQKLTSMLIIFGPEGGISRKESEALLQAGAQT-MSLGPRILRAETAPLY 235 Query: 233 AMALVQAIC 241 A++ + Sbjct: 236 ALSAISYEF 244 >gi|227555475|ref|ZP_03985522.1| protein of hypothetical function DUF558 [Enterococcus faecalis HH22] gi|307272833|ref|ZP_07554080.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855] gi|227175397|gb|EEI56369.1| protein of hypothetical function DUF558 [Enterococcus faecalis HH22] gi|306510447|gb|EFM79470.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855] gi|315574554|gb|EFU86745.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309B] gi|315581804|gb|EFU93995.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309A] Length = 245 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + +++V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSVVSY 239 >gi|108760347|ref|YP_629393.1| hypothetical protein MXAN_1133 [Myxococcus xanthus DK 1622] gi|108464227|gb|ABF89412.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK 1622] Length = 244 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 7/228 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RLF P + + +G++ HYL HVLR++EGD + +F+GK + +++++V + Sbjct: 1 MVRLFAPLPEPAPAEVELTGERRHYLLHVLRLEEGDALEVFDGKGRAFEARVAHVTPDVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +R + +V + K ++L+ ++QK E+G A PV T + + Sbjct: 61 RVTLGTARVAPPRREVSILQGLPKGDKLELVLQKGTELGATAFHPVATARSVVKLEPKRA 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R AA QC +P + P L ++ ++ DE + E Sbjct: 121 EERTSRWTKIVEEAARQCRRDDVPRVATPAPLLDAARSLTAGTVLLVLDEEESAVPLGEA 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A VA++IGPEGG EE + L +L P++LG RILR++T Sbjct: 181 FRAAGAGTAVALVIGPEGGLAREEVDALMALG-ARPVTLGKRILRTET 227 >gi|322392665|ref|ZP_08066125.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC 700780] gi|321144657|gb|EFX40058.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC 700780] Length = 247 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGCAISPVTIE-DKETSKHMFQVMRLKEDDKVTLVFDDGIKRLARVVNVETRQL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P + L D +IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPEVTLFEKKADFLAQLDQFDRIVVAYEESAKEGESAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LIQAVAGLEKGAKLLFIFGPEGGLSPVEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|307287880|ref|ZP_07567913.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109] gi|306501025|gb|EFM70332.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109] Length = 251 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|315167500|gb|EFU11517.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1341] Length = 245 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKRQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|315223790|ref|ZP_07865639.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287] gi|314946236|gb|EFS98236.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287] Length = 246 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 ++ ++ VLR K GD + + NGK + +K+ + K + + + + Sbjct: 21 DKEESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTPQLPRPYYLH 80 Query: 84 YIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 + +P K R ++ ++K+ E+G+ I P+I +++ T ++R +SA +Q Sbjct: 81 LVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCY 140 Query: 143 LPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP + P K D + + + + L + +LIGPEG + Sbjct: 141 LPKLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLFRALKPF--PERITVLIGPEGDF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + E T F+ P+SLG LR++TAA+ A V I Sbjct: 199 STNEINTALQQAFM-PISLGDTRLRTETAAIVACHTVAVI 237 >gi|300214541|gb|ADJ78957.1| Putative uncharacterized protein [Lactobacillus salivarius CECT 5713] Length = 243 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 15/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R F D I T+ + + + Y + VLRMK GD L + + +I+ + GK+ Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDAFELVDDAEVVHKMEITKIEDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE S+V K ++ D+++QK EMG I Y+ + Sbjct: 59 EATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWDRK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ SAAEQ +P + L+ + +++ N + A E + Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKDI--DFEKNDARIVAYEESAKKGES 176 Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L I ++ + GPEGG +E E L + F+ LGPRI+R++TA + +A Sbjct: 177 GNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLAS 235 Query: 237 VQAIC 241 + Sbjct: 236 LSFAL 240 >gi|317122986|ref|YP_004102989.1| hypothetical protein Tmar_2182 [Thermaerobacter marianensis DSM 12885] gi|315592966|gb|ADU52262.1| protein of unknown function DUF558 [Thermaerobacter marianensis DSM 12885] Length = 252 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 15/249 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +FVD L + D H+L VLR GD ++ + WL ++ G Sbjct: 4 PHVFVDRELEPGARAPLPADDAHHLLRVLRRGPGDQVVAVSPGGCRWLGQLEP-GTPPHV 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------TH 121 + + S V K +++ +++ E+G+ PV+ + + Sbjct: 63 VAQERLPSSEPPLHVTLGQGLPKGPKMEEVVRHGTEVGVSRFVPVLAARSVSRPEADAAA 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + AA Q +P + PP LE LL I+ E S E+L Sbjct: 123 RRLQRWQRIAREAARQAQRSAVPQVDPPRPLEGLLAEEGPWDLILMPWEEEESRGLREEL 182 Query: 182 HAI-------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 A+ A V +L+GPEGG+ E E ++LGPRILR++TA V Sbjct: 183 EAVAAVWGRPAAGRRVLVLVGPEGGWDPAEVEAARRAG-ARVVTLGPRILRTETAGVLVA 241 Query: 235 ALVQAICGD 243 LV + GD Sbjct: 242 GLVLHVLGD 250 >gi|330833709|ref|YP_004402534.1| hypothetical protein SSUST3_1939 [Streptococcus suis ST3] gi|329307932|gb|AEB82348.1| protein of unknown function DUF558 [Streptococcus suis ST3] Length = 248 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F++ + D ++ V+R++ + I+L + L+++ Sbjct: 1 MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDDGIKRLARVVDSQNQSV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E S + V K ++L+++ QK+ E+GM A+ V+ + Sbjct: 61 EIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKL 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----N 176 +++ AAEQ +P + L QI+ A E E N Sbjct: 121 CKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLAGFDQIILAYEEAAKEGEQAN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ L + +V +++GPEGG EE V LGPRILR++TA + A++ Sbjct: 181 LVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSA 239 Query: 237 VQAIC 241 + Sbjct: 240 ISYAT 244 >gi|168486375|ref|ZP_02710883.1| protein YqeU [Streptococcus pneumoniae CDC1087-00] gi|183570623|gb|EDT91151.1| protein YqeU [Streptococcus pneumoniae CDC1087-00] Length = 247 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V + LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSS 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|113477044|ref|YP_723105.1| 16S ribosomal RNA methyltransferase RsmE [Trichodesmium erythraeum IMS101] gi|110168092|gb|ABG52632.1| protein of unknown function DUF558 [Trichodesmium erythraeum IMS101] Length = 258 Score = 217 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 12/249 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS---Y 60 + L+RL + + Q + +Q HYL VLR+ GD ++ +G+ WL+K++ Sbjct: 1 MADLQRLAIAPQQIDQQQVFLTVEQQHYLRRVLRLGVGDKFIVMDGEGKWWLAKLTPDIS 60 Query: 61 VGKSIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117 + + +E + Q + ++ I + K N D ++++S E+G+ I PVI+ T Sbjct: 61 IKTELIAILEQEIAIQNELPIEITLISALPKGNSFDEVVRQSTELGITHIFPVISSRTVL 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176 + + + R + AAEQ + +P I L ++ N + C + N Sbjct: 121 KPSPQKLKRWQKIATEAAEQSERQVVPKIRETVEYSVALSLFEKQNLFTNYHKYICVARN 180 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 LE L + ++ I IGPEGG+ E E ++ F +SLG RILR TA + Sbjct: 181 NYPLLLESLLDNQKLESIVIAIGPEGGWTKGEIEAAIAIGF-QAVSLGKRILRGVTAPLV 239 Query: 233 AMALVQAIC 241 A++LV A+ Sbjct: 240 ALSLVAAVL 248 >gi|296124207|ref|YP_003631985.1| hypothetical protein Plim_3975 [Planctomyces limnophilus DSM 3776] gi|296016547|gb|ADG69786.1| protein of unknown function DUF558 [Planctomyces limnophilus DSM 3776] Length = 251 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 18/246 (7%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 + R F PL + G + H+ HVLR+K G I+LF+G +++ G Sbjct: 1 MSRFFHPELLKPLDSG-ELLLEGSEAHHALHVLRVKTGQQIVLFDGHGNSATAEVIRPGR 59 Query: 63 KSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QN 119 K + ++ S + + + K +RLD+M++K E+G+ P+IT+ + Sbjct: 60 KDVGLRIVSGIQHSSPPALQLTLLVATPKGDRLDWMVEKLTELGVSRFVPLITQRSVVDP 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-------VFADETC 172 ++R+R ISA +Q L I P L L DH Q + A + Sbjct: 120 RESKLERLRQTVISACKQSHRDWLMEIEEPARLTDWLNRKDHPTQWFGSLQAPLVARKAS 179 Query: 173 GSENSLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 + ++ + ++AILIGPEGG+ SEE+ L + P+ LG +LR++TAA Sbjct: 180 NDSQPIASANSRMPLENTSLAILIGPEGGWTSEEESQLMTSG-ARPVRLGQFVLRTETAA 238 Query: 231 VAAMAL 236 +A +L Sbjct: 239 IALTSL 244 >gi|315025980|gb|EFT37912.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2137] Length = 245 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|90961798|ref|YP_535714.1| hypothetical protein LSL_0821 [Lactobacillus salivarius UCC118] gi|90820992|gb|ABD99631.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] Length = 243 Score = 217 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 15/245 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R F D I T+ + + + Y + VLRMK GD L + + +I+ + GK+ Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDTFELVDDAEVVHKMEITKIEDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE +DV + K ++ D+++QK EMG + Y+ + Sbjct: 59 KATSVEVIPSDVELPADVTIVCGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWDKK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ SAAEQ +P + L+ + +++ N + A E + Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKDI--DFEKNDARIVAYEESAKKGES 176 Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L I ++ + GPEGG +E E L + F+ LGPRI+R++TA + +A Sbjct: 177 GNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLAS 235 Query: 237 VQAIC 241 + Sbjct: 236 LSFAL 240 >gi|220909539|ref|YP_002484850.1| 16S ribosomal RNA methyltransferase RsmE [Cyanothece sp. PCC 7425] gi|219866150|gb|ACL46489.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7425] Length = 243 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 5/240 (2%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L+RL + + Q + Q+HYL VLR+ GD L WL+++S Sbjct: 1 MARLQRLAIASTQRQQQQIYLTPSQHHYLIQVLRLTVGDRFLAILEPGERWLAELS--SS 58 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +E V + + K D ++ ++ E+G+ I P+I+ T Q + Sbjct: 59 QVALLLEEVEGETELAVPVTLLAALPKGQGFDQVVYQATELGVSRIIPLISDRTLLQPSE 118 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R A EQ L +P I PP + ++ Q ++ + L Sbjct: 119 QKLERWRRIVREATEQSGRLVVPRIDPPLRFSPAIAAFNPADQQLYFCTPDPAAPHLADC 178 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A A +AI+ GPEGG+ E + F +SLG R+LR+ TA + A++LV A Sbjct: 179 LADAPFNPIAIMTGPEGGWTETEMTQAQAAGF-QSVSLGQRVLRAVTAPIVALSLVAAHL 237 >gi|117923554|ref|YP_864171.1| hypothetical protein Mmc1_0238 [Magnetococcus sp. MC-1] gi|117607310|gb|ABK42765.1| 16S rRNA m(3)U-1498 methyltransferase [Magnetococcus sp. MC-1] Length = 248 Score = 217 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 6/227 (2%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL+ PLC + YL VLR+ EGD + LFNG+ G W + I+ ++ Sbjct: 5 PRLYTPQPLCAGQPVTLDREAQRYLLKVLRLGEGDALYLFNGEGGAWSAHITQTSGPLQV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTHYNM 124 + ++ + ++ ++ +IQK VE+G+ + P+ + + + + Sbjct: 65 TPQQFEPEPMAPLNLTLVQGLSRSGPMELVIQKGVELGLQQLIPLQSARSVARAKGEHKL 124 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHA 183 +R + I AAEQC L P L + +I+F ++ SL + A Sbjct: 125 ERWQRIAIEAAEQCRRSRLLQFQPVCDWSQLAGSLPEQGPRILFWEDHRHHTPSLRQWAA 184 Query: 184 I--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +LIGPEGG +EE + SLGPR+LR++T Sbjct: 185 TLEQAPTQITLLIGPEGGLSAEEVTHATTNLGFQTCSLGPRVLRTET 231 >gi|313674581|ref|YP_004052577.1| hypothetical protein Ftrac_0464 [Marivirga tractuosa DSM 4126] gi|312941279|gb|ADR20469.1| protein of unknown function DUF558 [Marivirga tractuosa DSM 4126] Length = 231 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 110/234 (47%), Gaps = 9/234 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + L + D+ + VLR ++GD + + +GK + +KI+ K Sbjct: 1 MQLFY--QNLLPEINY-LDQDESKHCIKVLRKQQGDELDIIDGKGTFYKAKITDASAKKC 57 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 RF++ ++ + +P K ++++++++K+ EMG+ I + +++ + Sbjct: 58 RFEIISTTQERKVAFHRHLAIAPTKNMDKMEWLVEKATEMGIDEISFFQSFHSERKVIKI 117 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R+ ISA +Q P + + LK D + +++ +N + + + Sbjct: 118 ERLEKKAISAMKQSLKAKKPLLNEIIPYKQFLKETDVSNKLIAY---VDFKNKIHMKNEL 174 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +H + +LIGPEG + EE + +SLG LR++TAA+AA+ L+ Sbjct: 175 SHQQDTLVLIGPEGDFTPEEVSLAIENRY-KKVSLGNSRLRTETAALAAVHLMN 227 >gi|221232521|ref|YP_002511674.1| hypothetical protein SPN23F_17940 [Streptococcus pneumoniae ATCC 700669] gi|298230706|ref|ZP_06964387.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255499|ref|ZP_06979085.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503511|ref|YP_003725451.1| hypothetical protein HMPREF0837_12009 [Streptococcus pneumoniae TCH8431/19A] gi|220674982|emb|CAR69559.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|298239106|gb|ADI70237.1| protein of hypothetical function DUF558 [Streptococcus pneumoniae TCH8431/19A] Length = 247 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKEISKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|326799017|ref|YP_004316836.1| ribosomal RNA small subunit methyltransferase E [Sphingobacterium sp. 21] gi|326549781|gb|ADZ78166.1| Ribosomal RNA small subunit methyltransferase E [Sphingobacterium sp. 21] Length = 236 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 7/228 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 + + + D+ + A VLR+ GD I+L +G+ + +I+ K + + Sbjct: 4 FYTPDIEANAIEYVLNEDESKHCARVLRLGIGDPIVLIDGRGSLFRVEIADAHPKRTKVR 63 Query: 69 VEYQSRSQ-TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + R+ + + +P K +RL++ ++K+ E+G+ I P+I +++ ++R Sbjct: 64 ILTIERNYGKRNHYLHIAVAPTKNLDRLEWFLEKATEIGIDEITPIICEHSERKELKIER 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + +A +Q P I P + + C + I Sbjct: 124 LTKVVTAAVKQSLSAYHPKINEPIDFRRFAEELPAKQHFIAH---CLEATKVTLTAEIKP 180 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + +LIGPEG + E E S +SLG LR++TAA+ A Sbjct: 181 HGSYCVLIGPEGDFSPSEVEFAISKG-CQAISLGNTRLRTETAALYAC 227 >gi|315033292|gb|EFT45224.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0017] gi|315143405|gb|EFT87421.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2141] Length = 245 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71 K K + + YH++ V+RM D L L++I + + + ++ Sbjct: 3 EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125 + + +V K ++L++++QK E+G V+ + Sbjct: 63 EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184 R++ AAEQ P + + ++ +D ++ A E + +L + Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182 Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +L GPEGG+ +E E LGPRILR++TA + ++ V Sbjct: 183 STCQPGACLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239 >gi|134300332|ref|YP_001113828.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum reducens MI-1] gi|134053032|gb|ABO51003.1| protein of unknown function DUF558 [Desulfotomaculum reducens MI-1] Length = 247 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 113/253 (44%), Gaps = 26/253 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R FV +G +++ VLRM+ G+N+ L +G+ +L++I + K + Sbjct: 1 MPRFFVQPEQINSDTAVINGPDVKHISRVLRMETGNNLTLLDGRGNVYLAQILEINKQEV 60 Query: 66 RFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ Q + ++ V + K ++++ +IQK E+G+ +I P+ + + Sbjct: 61 HCRILEQQEATSEPTVKVTLVQGLPKGDKMETIIQKCTELGVSSIIPLAAARSIVKLDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + + AA+QC +P +Y ++ + +L+ + ++ E +++ Sbjct: 121 KAAERVQRWQRVAVEAAKQCRRSGIPEVYMLSSWDEILQQIPPDALVLMPWEGERTKSLR 180 Query: 179 EKLHAIAHIPN-VAILIGP--------EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E L P V I IGP E + F P++LG RILR++TA Sbjct: 181 EVLQTRPMAPGQVYIFIGPEGGFEEEE--------VERVKEKGFY-PVTLGSRILRTETA 231 Query: 230 AVAAMALVQAICG 242 AA+ +V G Sbjct: 232 GPAALTMVLYQFG 244 >gi|313891169|ref|ZP_07824788.1| RNA methyltransferase, RsmE family [Streptococcus pseudoporcinus SPIN 20026] gi|313120532|gb|EFR43652.1| RNA methyltransferase, RsmE family [Streptococcus pseudoporcinus SPIN 20026] Length = 258 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ P C + ++ V+R+ +GD + L + L+ +S Sbjct: 1 MQQYFIKGP-CQNPIFIKDKETVKHMFQVMRLTDGDQVCLVFDDGIKRLAAVSDSAAHSF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E +S DV K ++L+++ QK+ E+G AI V + Sbjct: 60 TILEDWDQSVELPVDVTIASGFPKGDKLEWVTQKATELGASAIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +++ AAEQ +P + LK + A E Sbjct: 120 AKKQEKLAKIAQGAAEQSKRNIVPEVELFEQKADFLKQVSRFDSVFVAYEESAKTGEQAA 179 Query: 181 ----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L A + + GPEGG +E + + T + LGPRI+R++TA + ++ Sbjct: 180 FATGLKACQPGDKLLFIFGPEGGLSPQEIQAFEVMGAQT-IGLGPRIMRTETAPLYVLSA 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|255525324|ref|ZP_05392264.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7] gi|296188192|ref|ZP_06856584.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7] gi|255510996|gb|EET87296.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7] gi|296047318|gb|EFG86760.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7] Length = 251 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 26/254 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV+ +GD ++ VLR++ GD + + N E+L +I + K Sbjct: 1 MHKFFVNRNDINDNAAIINGDDVKHIYKVLRLQVGDKVNINNCGGEEFLGEIEEINKKQV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 ++ + +V K+ ++D ++QK+ E+G+ + P++T + Sbjct: 61 IVKFIKKLPLNNESNVEVYLFQGLPKSAKMDLIVQKTTELGVKEVTPIVTERVVVKNELG 120 Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +Q +P I P + LL+ IV E + Sbjct: 121 EFKKIDRWCRIALEACKQSKRSLVPKINTPIEFQSLLEVLKQMDLIVVPYENAEGYGIKK 180 Query: 180 KLHAIAH----------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 ++ I P + E E L L ++LGPRILR++TA Sbjct: 181 VVNNIDKDSIKKIGIIIGPEGG--------FEESEIEALEKLG-AHIVTLGPRILRTETA 231 Query: 230 AVAAMALVQAICGD 243 M+L+ GD Sbjct: 232 GFVCMSLLMYELGD 245 >gi|256820668|ref|YP_003141947.1| 16S ribosomal RNA methyltransferase RsmE [Capnocytophaga ochracea DSM 7271] gi|256582251|gb|ACU93386.1| protein of unknown function DUF558 [Capnocytophaga ochracea DSM 7271] Length = 246 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 7/220 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 ++ ++ VLR K GD + + NGK + +K+ + K + + + + Sbjct: 21 DKEESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTLQLPRPYYLH 80 Query: 84 YIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 + +P K R ++ ++K+ E+G+ I P+I +++ T ++R +SA +Q Sbjct: 81 LVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCY 140 Query: 143 LPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 LP + P K D + + + + L + + +LIGPEG + Sbjct: 141 LPKLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLSRALKSF--PERIIVLIGPEGDF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + E T FV P+SLG LR++TAA+ A V I Sbjct: 199 STNEINTALQQAFV-PISLGDTRLRTETAAIVACHTVAVI 237 >gi|227890818|ref|ZP_04008623.1| protein of hypothetical function DUF558 [Lactobacillus salivarius ATCC 11741] gi|227867227|gb|EEJ74648.1| protein of hypothetical function DUF558 [Lactobacillus salivarius ATCC 11741] Length = 243 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R F D I T+ + + + Y + VLRMK GD L + + +I+ + GK+ Sbjct: 1 MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDIFELVDDVEVVHKMEITKIEDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE +DV K ++ D+++QK EMG + Y+ + Sbjct: 59 KATSVEVIPSDVELPADVTIACGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWDKK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + + R++ SAAEQ +P + L+ + ++ +IV +E+ S Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKD-IDFEKNDARIVAYEESAKKGESG 177 Query: 179 EKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + P+ I I GPEGG +E E L + F+ LGPRI+R++TA + +A + Sbjct: 178 NLFKILNKKPSNIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLASL 236 Query: 238 QAIC 241 Sbjct: 237 SFAL 240 >gi|297588453|ref|ZP_06947096.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516] gi|297573826|gb|EFH92547.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516] Length = 241 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 114/245 (46%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + R F + I + G+ Y+++ + LR+ +GD I G D ++++I + I Sbjct: 1 MYRTFRNPEDKIDDKIIIKGEDYNHIKNSLRLTKGDLIHQVIG-DTTFVTEIEDITPDEI 59 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ + Q ++ +K+++ +Y+IQK+ E+G+ I V T T + Sbjct: 60 ICKIIDEDNIQYESPLNITLYQCILKSDKNEYIIQKATELGVNRIVFVETERTVVKLDEK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + +++Q +P I + + ++ +VF + S Sbjct: 120 KWIKKKNRFEKIALESSKQSKRTFIPEIEGLININK-ISTQNNFLNLVFYENETE---SF 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L ++ ++ I IGPEGG E + L S F +SLG RILR+DTA + A++++Q Sbjct: 176 QSLLTNSNNKDINIFIGPEGGLSEENLQVLKSKGF-KSVSLGNRILRADTAPICALSIIQ 234 Query: 239 AICGD 243 GD Sbjct: 235 YELGD 239 >gi|227513276|ref|ZP_03943325.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083477|gb|EEI18789.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus buchneri ATCC 11577] Length = 252 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++ F++ L + + H+L+ VLR + GD + L + +L++I + G+ + Sbjct: 1 MQHYFINENLTNNQRVTLPLEIGHHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQV 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 ++ + +V + K N+ + ++QK+ E+G I + I ++ Q Sbjct: 61 TATIQKELHMDVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETC---G 173 + + R+ +SAAEQ +P + +L L K + ++V +E Sbjct: 121 SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKRPFDGPFDVKLVAYEEAAKDGE 180 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 N + L I ++ + GPEGG SEE L +++ LGPRILR++TA + Sbjct: 181 ESNLAQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISA-GLGPRILRTETAPMYF 239 Query: 234 MALVQA 239 ++ V Sbjct: 240 LSSVSV 245 >gi|227524419|ref|ZP_03954468.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088424|gb|EEI23736.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 248 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 12/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++ F++ L + + H+L+ VLR + GD + L + +L++I + G+ + Sbjct: 1 MQHYFINENLTNNQRVTLPLEIGHHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQV 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 ++ + +V + K N+ + ++QK+ E+G I + I ++ Q Sbjct: 61 TATIQKELHMDVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 + + R+ +SAAEQ +P + +L L K + ++V +E N Sbjct: 121 SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKR-PFDVKLVAYEEAAKDGEESN 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L I ++ + GPEGG SEE L +++ LGPRILR++TA + ++ Sbjct: 180 LAQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISA-GLGPRILRTETAPMYFLSS 238 Query: 237 VQA 239 V Sbjct: 239 VSV 241 >gi|319745949|gb|EFV98232.1| RsmE family RNA methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 246 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 12/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + D ++ +V+R+ E D ++L + L+K+ Sbjct: 1 MQQYFVNGKADDFVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + V K ++LD + QK+ E+G AI V+ + Sbjct: 60 QILEELDSNVEMPVQVTIASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 D++ + AAEQ LP + + +I A E E Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELNGFDKIFIAYEESAKEGEMSA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + + + GPEGG +E + + + LGPRI+R++TA + A+++ Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSV 238 Query: 237 VQA 239 + Sbjct: 239 ISY 241 >gi|261378167|ref|ZP_05982740.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685] gi|269145632|gb|EEZ72050.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685] Length = 241 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 18/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R ++ L ++ + +L +VLR++ G I+LF+GK ++++ + K Sbjct: 1 MSRFYLPENLSVRQTVNLPDNIIRHL-NVLRIRTGTEIILFDGKGKAHAARLTVLEKRRA 59 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ + + T+ + I S R+D+ +QKSVE+G+ AI+PVI+ + Sbjct: 60 EAEILREETADTESPLHITLIQSISSGERMDFTLQKSVELGITAIQPVISERCIVRLNGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177 + R + ISA EQ T+P + P TT L+ + +++ S N Sbjct: 120 RADKRLARWQEIVISACEQSGRNTVPPVLPITTYRESLRQIPSESTRLIM------SINR 173 Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 KL I ++ ++GPEGG+ +E++ F ++LG RILR++TAA+AA+A Sbjct: 174 ACKLADIRPQSGSIVFMVGPEGGWTEQEEQYAFDAGF-QAVTLGKRILRTETAALAALAA 232 Query: 237 VQAICGDW 244 +Q + GD+ Sbjct: 233 MQTLWGDF 240 >gi|299148609|ref|ZP_07041671.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23] gi|298513370|gb|EFI37257.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23] Length = 232 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 7/219 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80 + ++ + VLR+ GD I L +GK + ++I+ F ++ + Sbjct: 14 ELPEEEAQHCIRVLRLSIGDEITLTDGKGDFYKAEITVATNKRCFVNIKETIFQEPLWPC 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R ++ +K+ E+G + + R+++ +R+ +SA +Q Sbjct: 74 HLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 LP + + ++ + Q A G + L+ + + + +LIGPEG Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE + FV P+SL LR++TAA+ A + Sbjct: 191 FSEEEVKKAIERGFV-PISLSKSRLRTETAALVACHTLN 228 >gi|322375727|ref|ZP_08050239.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300] gi|321279435|gb|EFX56476.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300] Length = 247 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETIKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDVEACQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P + L D IV A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSVKLFEKKADFLAQLDQFDSIVVAYEESAKEREAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A++ Sbjct: 180 LLQAVTGLEKGAKLLFIFGPEGGLSPTEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|193213798|ref|YP_001994997.1| 16S ribosomal RNA methyltransferase RsmE [Chloroherpeton thalassium ATCC 35110] gi|193087275|gb|ACF12550.1| protein of unknown function DUF558 [Chloroherpeton thalassium ATCC 35110] Length = 247 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 114/240 (47%), Gaps = 18/240 (7%) Query: 10 LFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 FV K + + + ++H++ V+R K GD + + +G+ + ++I +GK S Sbjct: 4 FFVPESHIDLTKNRIELADQEFHHIVRVVRKKSGDTLWITDGRGTCFQTEIEQIGKNSAE 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K+ Q + ++ + S +K + R D+ ++K+ E+G+ I P++T T + Sbjct: 64 LKILSQEKKPAPKTKIAVALSLMKASERFDFFLEKATELGVAEILPMMTHRTVSRPAEKQ 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R ++A++Q + P ++P E +LK D I + ENS + Sbjct: 124 YEKKHERWEKIVLAASKQSRQMWFPKLHPIQPFEEVLKRNDEVKLIAY-------ENSAQ 176 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L ++ LIG EGG+ E F ++LG +LR++TA + A+A+V+A Sbjct: 177 HLVQGFSGKSILFLIGGEGGFTEAEVLAAKQAGF-QEMTLGESVLRAETAGIFAVAMVRA 235 >gi|331701362|ref|YP_004398321.1| ribosomal RNA small subunit methyltransferase E [Lactobacillus buchneri NRRL B-30929] gi|329128705|gb|AEB73258.1| Ribosomal RNA small subunit methyltransferase E [Lactobacillus buchneri NRRL B-30929] Length = 246 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ FV L + + H+L VLR + GD L + ++I + + Sbjct: 1 MQHYFVSEHLTVGQSIELPKTISHHLCRVLRAEVGDRFELVGDDHQVYEAEIGRLEGNQV 60 Query: 67 FKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 + + DV + K N+ ++++QK+ E+G+ + + I ++ Q Sbjct: 61 AANIIKPLDHNVELPVDVTIVSGLSKGNKPEWIVQKATELGVAHVIFLPMDWSIVKWDQK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 + R+ +SAAEQ +P + + L+ L D + Q+V +E+ N Sbjct: 121 ATKKITRLNEVALSAAEQSHRNVVPTVAYLSGLDALF-QLDFDTQLVAYEESAKQGEETN 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + A +A + GPEGG E L FV LGPRILR++TA + ++ Sbjct: 180 LVKAVRQTASGGTMAAVFGPEGGVSPAEVTQLVDHDFVLA-GLGPRILRTETAPLYFLSA 238 Query: 237 VQAIC 241 V + Sbjct: 239 VSTLT 243 >gi|282898816|ref|ZP_06306803.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] gi|281196343|gb|EFA71253.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] Length = 250 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L+RL + + Q + Q HYL VLR+++GD + +G WL++++ Sbjct: 1 MAQLQRLTIQASQLQQNQVLLTPQQKHYLLRVLRLQDGDEFISMDGMGKWWLTRLTADTA 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 I ++ + + + + K N D +++ S E+G+ +I PV++ T + Sbjct: 61 QI---LQPLTPKTELPLSITLMLALPKGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSP 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R AAEQ + +P I P L + ++ + E GS L + Sbjct: 118 QRLERWRRIAAEAAEQSERAFVPTILEPVVFNAALSEYINSQCYIC--EARGSYPHLINI 175 Query: 182 HAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I +I V + IGPEGG+ E T F P+SLG RILR+ TA + A++L+ A Sbjct: 176 INIPLKNIKEVVVAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSLIAA 234 Query: 240 IC 241 C Sbjct: 235 AC 236 >gi|79362513|ref|NP_175422.2| methyltransferase [Arabidopsis thaliana] gi|49660069|gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gi|55740521|gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gi|332194384|gb|AEE32505.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] Length = 296 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F D P + G ++ ++A VLR+K+ D + LFNGK G I + K+ Sbjct: 53 LPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTG 112 Query: 66 RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120 + + + Q Q V F +K R D++I+K E+G ++ P++T + + Sbjct: 113 VDFIAQEDQKVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIIS 172 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ + +AA+QC L + PP LL + + + A T ++ L Sbjct: 173 ENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGTLLDHILKSKLCLVA--TAEAKPLLNA 230 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +++ A + +++GPEG + +E E + T + LGP LR +TA +A +A + + Sbjct: 231 VNSSAKESSGLLIVGPEGDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLATL-VM 288 Query: 241 CGD 243 D Sbjct: 289 WSD 291 >gi|77409131|ref|ZP_00785845.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae COH1] gi|77172259|gb|EAO75414.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae COH1] Length = 246 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 12/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + D ++ +V+R+ E D ++L + L+K+ Sbjct: 1 MQQYFVNGKADDFVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + V K ++LD++ QK+ E+G AI V+ + Sbjct: 60 QILEELDSNVEMPVQVTIASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 D++ + AAEQ LP + +I A E E Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELAGFDKIFIAYEESAKEGEMSA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + + + GPEGG +E + + + LGPRI+R++TA + A+++ Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSV 238 Query: 237 VQA 239 + Sbjct: 239 ISY 241 >gi|326319528|ref|YP_004237200.1| ribosomal RNA small subunit methyltransferase E [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376364|gb|ADX48633.1| Ribosomal RNA small subunit methyltransferase E [Acidovorax avenae subsp. avenae ATCC 19860] Length = 240 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 16/242 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++ R PL + VLR++ GD I LF+G+ GE+ + ++ +G+S Sbjct: 2 NIPRFHCPEPLSSGAALALPPAAARH-VQVLRLQPGDAITLFDGRGGEYAATVARMGRSD 60 Query: 66 RFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ V + R+D++++K+ E+G+ I+PV + Sbjct: 61 VEVLVGAHDPVEREAGRSVHLVVGMPANERMDWLVEKATELGVARIQPVAAARSVLKLSG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSE 175 + + +A EQC +P + P L L+ ++V E Sbjct: 121 ERALKRQAHWQAIAAAACEQCGRNRVPQVEAPVPLADWLRLPPAPDAARLVL----SLRE 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 S A A V +L GPEGG E++ F+ P SLGPR+LR++TA+VAA++ Sbjct: 177 GSRPLHDAAASAACVQVLHGPEGGLAPHEEDLALERGFL-PASLGPRVLRAETASVAALS 235 Query: 236 LV 237 L+ Sbjct: 236 LL 237 >gi|182411872|ref|YP_001816938.1| hypothetical protein Oter_0047 [Opitutus terrae PB90-1] gi|177839086|gb|ACB73338.1| protein of unknown function DUF558 [Opitutus terrae PB90-1] Length = 251 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 15/249 (6%) Query: 7 LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F ++ S D+ H+L V R K GD ++ F+G+ EW+ ++ K+ Sbjct: 1 MPDFRVFCLPATAEPSEITLSADESHHLVAVNRAKRGDTVVAFDGRGVEWICELVDDRKN 60 Query: 65 IR-FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 KV ++ +++ ++ + K +D +++K+ E+G I P+ + TQ Sbjct: 61 AALLKVRFRQKARPLAYEITLGQALPKGASMDAIVRKATEIGATRIAPLESERTQVHLDS 120 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +D+ +T + AA+QC LP I +++ + A +++ Sbjct: 121 DRSDRKIDKWQTAALEAAKQCGNPFLPEITAVQNASTFMESARGYDLKLIASLQPAAKSL 180 Query: 178 LEKLHAIAH-----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 L A V L+GPEG + E + F P++LGP +LR +TAAV Sbjct: 181 KTVLAAFQATHGRTPKKVLWLVGPEGDFTPAEMSLSKTAGF-EPITLGPLVLRCETAAVY 239 Query: 233 AMALVQAIC 241 A++++ Sbjct: 240 ALSVLSYEL 248 >gi|67924875|ref|ZP_00518269.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501] gi|67853274|gb|EAM48639.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501] Length = 241 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 6/234 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R+ ++ + +Q HYL +VLR+KE ++ +G + +L K++ I Sbjct: 4 RIVIEPRQKQGKIINLTPEQKHYLKNVLRLKEDSEFIVIDGHNQTYLVKLNQDKGEI--- 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 ++ V + + K D +I+ E+G+ I P+IT+ T + + + ++R Sbjct: 61 IKELKEQTELPITVTLMIALPKNKGFDEVIRSCTELGVNTIIPIITKRTLLKPSSHKIER 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R A EQ + +P I P + L N D+ + + L Sbjct: 121 WRKIVKEATEQSERQIVPIIMEPMSFSEALNNMDNTNKNCYICVARKKAKHLLTYLLPEI 180 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +V I G EGG+ EE + L F+ P++LG R+LR+ TA + A++LV A+ Sbjct: 181 TNSVIIATGCEGGWTEEEIDQAEDLGFI-PVNLGSRVLRAVTAPLVALSLVGAV 233 >gi|268317477|ref|YP_003291196.1| hypothetical protein Rmar_1925 [Rhodothermus marinus DSM 4252] gi|262335011|gb|ACY48808.1| protein of unknown function DUF558 [Rhodothermus marinus DSM 4252] Length = 239 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 109/230 (47%), Gaps = 6/230 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-- 67 + + D+ H+ VLR + GD +++ +G G ++ V + Sbjct: 5 FYAPPEAFRDGWVRLPDDEAHHAVRVLRHRPGDEVIVVDGVGGWHRLRLELVDRQGVQGR 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +E + + + +K R + ++K+VE+G+ AI P++T T+ TH+ +R Sbjct: 65 VLETRRDVGEPPYRLTIGLALLKQTARFETFLEKAVELGVAAIVPLLTARTERTHFRPER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R I+A +QC LP ++ P +L + +++ ++ + + +L Sbjct: 125 ARRLLIAAMKQCGRSRLPLLHAPRPFAEVLHD-PAALRLLCHEQPDRPRHPIHELLR-RP 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + +L+GPEGG+ S+E + F T +SLG R LR++TAA+ A + Sbjct: 183 VGDALVLVGPEGGFTSDEVLQAEAAGFQT-VSLGARRLRAETAALVAASA 231 >gi|300869308|ref|ZP_07113899.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC 6506] gi|300332685|emb|CBN59097.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC 6506] Length = 284 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 120/276 (43%), Gaps = 40/276 (14%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L+RL + Q + Q HYL VLR++EGD L +G+ WL++++ + Sbjct: 1 MAQLQRLAIAPSQLQDRQIILTAQQQHYLYRVLRLREGDRFLAMDGRGHCWLAELAAID- 59 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 ++ E DV + + K N D +++++VE+G+ I PV++ T + + Sbjct: 60 AVAVIQEEVFIKSELNVDVTLMAALPKGNGFDDVVRQAVELGVYCIIPVVSDRTLLKPSS 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF-------ADETCGS 174 ++R + AAEQ + +P + P + ++N D + + C Sbjct: 120 QKIERWQRIAAEAAEQSERQIVPVMLEPVSFAVGVENCDRKYKYICVARGDSRHLLDCLL 179 Query: 175 ENSLEK-----------------------------LHAIAHIPNVAILIGPEGGYHSEEK 205 +N +EK I + P++ I GPEGG+ +E Sbjct: 180 DNKIEKEESPITNHQSPIINSQLPITNYQLPITNHQSQITNYPSIVIATGPEGGWTEKEV 239 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 T F P+SLG RILR+ TA + A++++ + Sbjct: 240 TTAIQFSF-QPVSLGSRILRAVTAPIVALSIIAGVL 274 >gi|310659094|ref|YP_003936815.1| hypothetical protein CLOST_1790 [Clostridium sticklandii DSM 519] gi|308825872|emb|CBH21910.1| conserved protein of unknown function [Clostridium sticklandii] Length = 248 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 14/233 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F+ + T + + + +++ VLR++ D I + + + E+L +I + K Sbjct: 1 MDRFFIRQEISQSTFIE-NQEDVKHISKVLRLRVNDKIEVVDSNEKEYLCEIIAISKDSV 59 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E + + ++ K +LD + QK E+G+ +I PV + + Sbjct: 60 EYKVIEEVAIKRELGVQIKVYQGVPKGQKLDLIAQKLTEIGVYSITPVEFKRCVSSIKEE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R++ AA+Q +P I P T + L+K N + E C EN+L Sbjct: 120 KEDKKIARLQRIIYEAAKQSKRNHIPKIESPMTFKELVKELKSNTINIVFYE-CEEENNL 178 Query: 179 EKLHA---IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A ++ I ++ +++GPEGG EE E L S L+LG RILR++T Sbjct: 179 KSYFASLDLSDIESIGVIVGPEGGITPEEIELLESNG-CKVLTLGARILRTET 230 >gi|71082844|ref|YP_265563.1| hypothetical protein SAR11_0136 [Candidatus Pelagibacter ubique HTCC1062] gi|71061957|gb|AAZ20960.1| conserved hypothetical protein [Candidatus Pelagibacter ubique HTCC1062] Length = 233 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 7/233 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67 RLF L + K Q HY+ V+R+K G+ LFN EW +KI + KSI F Sbjct: 5 RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNNSG-EWEAKILTISKSIVEF 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R + D+ FSPIK+N ++MIQK+ E+G+ P+I T N +R+ Sbjct: 64 NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ + + +P I P +L+ L + + ++F D SEN + +AH Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNHEKMD--LIFTD--LNSENKKLDFNKLAHN 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P ++IGPEG + EE+ + + V P+ + ILRS+TA ++A+++V + Sbjct: 180 PT-CVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVNYL 231 >gi|282881481|ref|ZP_06290152.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS 5C-B1] gi|281304645|gb|EFA96734.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS 5C-B1] Length = 242 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 8/233 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 FV + + + + VLR+ GD + L +G + + ++ F Sbjct: 7 FFVPDADHVN---ELPTSEALHALRVLRLSSGDEMFLMDGVGNFYRAIVTIASTKHCFYE 63 Query: 70 EYQSRSQTKQS--DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ Q K + +P K R+++M++K E+G I + ++++ R Sbjct: 64 IQETLPQQKSWRGHIHLAIAPTKTMERIEWMVEKMTEIGFDEITFLNCQFSERKQIRPIR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIA 185 + I+A +Q P + P + + + + I ++ L LH I Sbjct: 124 LEKIVIAAMKQSRKPWKPVVNPMVSYKNFIHHQTTGHRYIAHCYPEIERKDLLTTLHQIT 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ IL+GPEG + +E + F + +SLG LR++TA + A+A+ Q Sbjct: 184 DDDDITILVGPEGDFSVDEVKFAEQAGFES-ISLGKNRLRTETAGLMAVAMTQ 235 >gi|320527295|ref|ZP_08028480.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204] gi|320132319|gb|EFW24864.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204] Length = 247 Score = 215 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 13/239 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65 +++ F D PL + + + DQ H+ +V+R+ + I L +G + S + Sbjct: 5 MQQYFSDTPLVVGQEYILNKDQAHHAKNVVRLHH-ETIRLVYDGIGYFADA-YSKGKDFV 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +E R +V I+ + + ++QK+ E+G+ I P + + Sbjct: 63 AMVLEKDERINEIGVEVTLAMGLIRKEKFELVLQKACELGVTRIVPFESIRCVVRAKKEK 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R AAEQC +P I P L+ L+K + V E S+ S Sbjct: 123 EDKQQARRIDILQEAAEQCKRNWIPEITPIVQLKDLVKYR--SDVNVLPYENAYSK-SKF 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ +V +IGPEGG+ EE E L F ++LG RILR++TAA+ A A++ Sbjct: 180 MTEVLSPGQSVTFVIGPEGGFAPEEVEFLQQNGF-EAITLGKRILRAETAAMYACAVIS 237 >gi|261880465|ref|ZP_06006892.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361] gi|270332804|gb|EFA43590.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361] Length = 241 Score = 215 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 107/232 (46%), Gaps = 7/232 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRF 67 R F P + D+ + VLR++ GD+I L +G+ + ++++ VGK + Sbjct: 5 RYFY-SPNASDLT-ELPSDEAQHAIRVLRLQVGDDIYLMDGQGMFYHAEVTLSVGKHCSY 62 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + E +++T + +P K +R+++M++K+ E+G+ + ++ ++++ D Sbjct: 63 IIKEELPQTKTWLGRIHLAIAPTKMMDRMEWMLEKATEIGVDEVTMLLCQFSERKKIRTD 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAI 184 R+ +SA +Q P + T + + + I + E+L + Sbjct: 123 RLDKIIVSAMKQSRKAWKPRLNDLTQFKDFIVQSRRGRKFIAHCYHDIEKVDLFEELQQV 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +L+GPEG + +E + + ++LG LR++TA + A+ + Sbjct: 183 PQDEEITVLVGPEGDFSIDEVHFALEHGYES-IALGSSRLRTETAGLMAVTM 233 >gi|116627096|ref|YP_819715.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus thermophilus LMD-9] gi|116100373|gb|ABJ65519.1| Uncharacterized protein conserved in bacteria [Streptococcus thermophilus LMD-9] gi|312277559|gb|ADQ62216.1| Ribosomal RNA small subunit methyltransferase E [Streptococcus thermophilus ND03] Length = 247 Score = 215 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ D ++ +V+R+ E D ++L + L+++ + Sbjct: 1 MQQYFIKG-QVENPVIIKDKDTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+ + QK E+G AI V+ + Sbjct: 60 EVIEDLNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 D++ + AAEQ +P + L H +I A E L Sbjct: 120 AKKEDKLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELAT 179 Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + + GPEGG E + V + LGPRI+R++TA + A++ Sbjct: 180 LARELAKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|58617229|ref|YP_196428.1| hypothetical protein ERGA_CDS_05020 [Ehrlichia ruminantium str. Gardel] gi|58416841|emb|CAI27954.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 238 Score = 215 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 128/230 (55%), Gaps = 5/230 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V + + K HY++ V+R + D++ +FNGKDGEW+ +I + +I+ + Sbjct: 9 RLYVPDSISKHSIIKLDTLASHYISKVMRATKCDHVKIFNGKDGEWIGEICELSNNIKIR 68 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 ++ +R Q K ++ F +K L +I+++ EMG+ ++P+ T++ ++ N+D+ R Sbjct: 69 IDKLTRKQVKSKNLTLCFGIVKGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCR 128 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + I A+EQC+ L +P I P + L K N + DET + E L + Sbjct: 129 KWAIEASEQCERLDIPQISHPISFTDLKKLDTANINFIICDETGNGKKPAEILT---NKN 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ I++GPEGG+ SEE + F LSLG RILR DTA V+A+A V Sbjct: 186 NIYIIVGPEGGFSSEELDFA--YTFCNGLSLGTRILRVDTAVVSALAYVN 233 >gi|260438505|ref|ZP_05792321.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM 2876] gi|292809094|gb|EFF68299.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM 2876] Length = 247 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 24/251 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + R F G +++ +VLRMK+ D +++ G + ++L I + I Sbjct: 1 MNRFFAKSENIFSDHIVIDGLDVNHIKNVLRMKKDDELMVSGGNNTDYLCSIKEFTDDEI 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + + + K ++++ +IQK VE+G+ I PV + + + Sbjct: 61 YLSIISANEADRELPCRIHLFQGLPKGDKMEMIIQKCVELGVNEIIPVAMKRSVVRLDDK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 + R + + SAA+Q +P I+ + + + D + +++ + G + + Sbjct: 121 KAKSKVARWQLISESAAKQSGRTIIPCIHEVMSFKEAVNYAKDMDVKLIPYELCEGMKAT 180 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-------FVTPLSLGPRILRSDTAA 230 E L + +VA+ IGP + L + P+SLG RILR++TA Sbjct: 181 KEALSGLKSGMDVAVFIGP--------EGGLEVEEVEKAKELGIIPISLGKRILRTETAG 232 Query: 231 VAAMALVQAIC 241 +A MA++ Sbjct: 233 LAIMAIIMYHL 243 >gi|91762733|ref|ZP_01264698.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique HTCC1002] gi|91718535|gb|EAS85185.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique HTCC1002] Length = 233 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67 RLF L + K Q HY+ V+R+K G+ LFN EW +KI + KSI F Sbjct: 5 RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNNSG-EWEAKILTISKSIVEF 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R + D+ FSPIK+N ++MIQK+ E+G+ P+I T N +R+ Sbjct: 64 NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ + + +P I P +L+ L + ++F D SEN + +AH Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNH--EKMGLIFTD--LNSENKKLDFNKLAHN 179 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P ++IGPEG + EE+ + + V P+ + ILRS+TA ++A+++V + Sbjct: 180 PT-CVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVNYL 231 >gi|148984210|ref|ZP_01817505.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP3-BS71] gi|147923499|gb|EDK74612.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus pneumoniae SP3-BS71] gi|301800568|emb|CBW33208.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] Length = 247 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ + + + + GPEGG E E+ + V LG RILR++TA + A++ Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGSRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|260590983|ref|ZP_05856441.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319] gi|260536848|gb|EEX19465.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319] Length = 255 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 18/243 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 FV + + ++ + VLR+KEGD I L +G+ + +++S F Sbjct: 7 FFVP---NANVEKELPTEEAIHALRVLRLKEGDEIFLMDGEGSFYQAEVSLATSKKCFYT 63 Query: 70 EYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 Q Q + +P K R+++M++K+ E+G I + ++++ DR Sbjct: 64 IKQVLKQEPTWCGKIHLAIAPTKDMGRMEWMVEKATEIGFDEITFLNCKFSERKVLRTDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKLHAI 184 + ISA +Q P + T+ + N + I ++ + Sbjct: 124 IEKIVISAVKQSHKAWKPVVNDMTSFCKFIDNHKCNGQKYICHCYSEIDRDDFFTLIDTF 183 Query: 185 AH---------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 AH ++ +L+GPEG + EE F ++LG LR++TA ++A+ Sbjct: 184 AHNVQDIKPSIGNDITVLVGPEGDFSIEEVRYAIDHGF-KSVTLGNSRLRTETAGLSAVM 242 Query: 236 LVQ 238 + Q Sbjct: 243 MSQ 245 >gi|304413315|ref|ZP_07394788.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1] gi|304284158|gb|EFL92551.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1] Length = 271 Score = 215 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 14/220 (6%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L ++ + D +++ VLRMK+G + LF+G + + ++I + K F Sbjct: 12 LSDHSEIVLNDDAVKHVSLVLRMKKGQLLHLFDGSNRLFTAEIIRLDKKKVFVRVDAGCV 71 Query: 76 QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRV 127 + ++S + + + R++ IQKSVE+G+ + P+ + + + Sbjct: 72 EDRESPLHLHLGQVISRGERMELTIQKSVELGVNVLTPLFSERCSIKLSEERLEKKNQQW 131 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I+A EQC +P I +L + D + ++ + N+L + Sbjct: 132 RKIAIAACEQCGRNVIPEIRAAMSLSDWCQQQDDSLKLTLDPQAKKQMNTLPL-----SV 186 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + +LIG EGG ++E + + F + +GPRI R++ Sbjct: 187 DKIRLLIGSEGGLSADEIDMTFNNGF-EGIRMGPRIFRTE 225 >gi|312890379|ref|ZP_07749916.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM 18603] gi|311297149|gb|EFQ74281.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM 18603] Length = 234 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 8/228 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ LF + S ++ + VLR++ GD++ L +G G + ++I K + Sbjct: 1 MQ-LFYTPDITDSPIYFLSEEESKHCIRVLRLQMGDHVQLIDGHGGLYEAEIVDAHPKKV 59 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 K+ Q+ + + +P K RL++ ++K+ E+G+ I +I + ++ Sbjct: 60 ALKLLSLQNEFGRRNHYLHIAVAPTKNLERLEWFLEKATEIGIDEISLMICQRSERKEAK 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R+ SA +Q P + T + L+ N + Q A G + L L Sbjct: 120 AERLNKIITSAIKQSLKAYHPLLNEVTPFQKLI-NQPFDGQKFIAHCEPGDKAELSSLLK 178 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + ILIGPEG + +E E F P++LG LR++TAA+ Sbjct: 179 LQGC--YLILIGPEGDFSPKEIEDALQNGF-EPITLGNSRLRTETAAL 223 >gi|120613393|ref|YP_973071.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax citrulli AAC00-1] gi|120591857|gb|ABM35297.1| protein of unknown function DUF558 [Acidovorax citrulli AAC00-1] Length = 240 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 16/242 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++ R PL + VLR++ GD I LF+G+ GE+ + ++ +G+S Sbjct: 2 NIPRFHCPEPLSSGAALALPPAAARH-VQVLRLQPGDAITLFDGRGGEYAATVARMGRSD 60 Query: 66 RFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ V + R+D++++K+ E+G+ I+PV + Sbjct: 61 VEVLVDAHDPVEREAGRSVHLVVGMPANERMDWLVEKATELGVARIQPVAAARSVLKLSG 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSE 175 + + +A EQC +P + P L L+ ++V E Sbjct: 121 ERALKRQAHWQAIAAAACEQCGRNRVPRVEAPVPLADWLRLPPAPGAARLVL----SLRE 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 S A A V +L GPEGG E++ F+ P SLGPR+LR++TA+VAA++ Sbjct: 177 GSRPLHDAAAGAACVQVLHGPEGGLAPHEEDLALERGFL-PASLGPRVLRAETASVAALS 235 Query: 236 LV 237 L+ Sbjct: 236 LL 237 >gi|319406725|emb|CBI80358.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 194 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 90/190 (47%), Positives = 113/190 (59%), Gaps = 2/190 (1%) Query: 56 SKISYVGKSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 + S+ K I Q R Q SD+ Y F+P+K RLDY+IQK+VEMG+ + PVIT Sbjct: 3 CQASFYKKKIVVACLIRQERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVIT 62 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 +TQ T NM R+ I A+EQC IL+LP P LE L+NWD + F DE S Sbjct: 63 HHTQVTRINMARIEANIIEASEQCGILSLPKCAPVVALETFLENWDKTHALFFCDELNES 122 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N + L P + +LIGPEGG+ EE+ L PFV +SLGPRILR+DTAAVAA+ Sbjct: 123 YNPIPLLRKHGTKP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAAL 181 Query: 235 ALVQAICGDW 244 LV A GDW Sbjct: 182 TLVNATMGDW 191 >gi|17228844|ref|NP_485392.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc sp. PCC 7120] gi|17130696|dbj|BAB73306.1| alr1349 [Nostoc sp. PCC 7120] Length = 235 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S L+R+ + + Q + Q HYL VLR++EGD ++ +G WL+ ++ Sbjct: 1 MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQA 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +E + + + + K + D +++ E+G+ I PV++ T + Sbjct: 61 QV---LEELAVKTELPVAITLMIALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPST 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R AAEQ + +P I P T + N + + + + L Sbjct: 118 QKLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRYI-CEARGEYVHLKNVL 176 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 I+ V + IGPEGG+ E E +L F P+SLG RILR+ TA + A++L+ A C Sbjct: 177 TDISGG--VVVAIGPEGGWTDRELEEATTLRF-QPVSLGGRILRAVTAPLVALSLISAAC 233 >gi|225024619|ref|ZP_03713811.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC 23834] gi|224942633|gb|EEG23842.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC 23834] Length = 240 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 103/232 (44%), Gaps = 18/232 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R +V + + ++ VLR++ G ++LF+G+ +++ +G+ Sbjct: 1 MPRFYVPQTFVAGEVLRLPENVCRHI-QVLRLQAGAPLVLFDGQGQAVAAELLEIGRKQA 59 Query: 67 FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + S+ V I + + ++D+ +QK E+G+ I P ++ + + Sbjct: 60 MARVDKLLTESRESPLAVTLIQAVSASEKMDFAVQKGTELGVKRIVPTVSMRSNVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176 + R + ISA EQC +P + P L +L + +++ + Sbjct: 120 RAEKKVRRWQEIAISACEQCGRNEVPPVAPIVDLAQVLAALPADSGARLLLSPHGGV--- 176 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L ++ + + +LIGPEGG +EE++ S F + LG R+LR++T Sbjct: 177 ---PLRSLPPVQSSVLLIGPEGGLTAEEEDLARSYGF-QAVQLGARVLRTET 224 >gi|332882920|ref|ZP_08450527.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679128|gb|EGJ52118.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 254 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 20/246 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 R F + + + D+ + VLR++ GD I L +GK + ++I+ GK F Sbjct: 5 RFFYAPDVAVDAE--LPADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLF 62 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 KV E + + +P K +R++++ +K+ E+G + + RY++ + Sbjct: 63 KVLEAVPHPKEWSGHLHLALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEK---- 180 R+ +SA +Q P + + F+ + + I + + Sbjct: 123 RIDKILVSAMKQSHKARKPLLNEMEDFKRFVARPFAGQKFIAHCYDEADVAGVAKASEDK 182 Query: 181 ---------LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L + + +L+GPEG + +E + F +SLG LR++TAA+ Sbjct: 183 AMDGGKPFLLDELDAGQDALVLVGPEGDFSIDEVRLAQAHGF-RSVSLGRSRLRTETAAL 241 Query: 232 AAMALV 237 A+ L+ Sbjct: 242 VAVHLM 247 >gi|254455755|ref|ZP_05069184.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter sp. HTCC7211] gi|207082757|gb|EDZ60183.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter sp. HTCC7211] Length = 232 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 8/232 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RLF L I + K Q HY++ V+R+KE + LFN EW +KI + KS + F Sbjct: 5 RLFFPKSLSINLKDKLDKSQSHYVSKVMRIKENEVFSLFNSSG-EWEAKIISISKSSVEF 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + Q R + ++ FSPIK+N ++MIQK+ E+G+ P+I T N +R+ Sbjct: 64 NITKQLRQKENLKELWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I AAEQ + +T+P I P L+ L N I T ++ L+KL Sbjct: 124 EKVIIEAAEQSNRITVPIIEEPQKLKNFLSN--DMDLIFTDLNTSNTKIDLKKLTT---- 177 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEG + EE+E + V + + ILRS+TA ++A++++ Sbjct: 178 KPTCVIIGPEGDFSEEEREKILKFNGVQSIKINENILRSETAVISALSIINY 229 >gi|328945350|gb|EGG39503.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1087] Length = 250 Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 14/246 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KE + + L + L+++ G+ Sbjct: 1 MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKEDEQVTLVFDDGVKRLARVLDPGQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 VE + + V K ++L+++ QK+ E+G A+ V + Sbjct: 59 LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGACALWGFPAEWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L +I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAALAAFDRIIVAYEESAKEGETA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L + V + GPEGG S+E H V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLETGAKVLFIFGPEGGLSSDEIAAFHQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAIC 241 V + Sbjct: 238 AVSVLL 243 >gi|227510269|ref|ZP_03940318.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189921|gb|EEI69988.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 248 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 12/243 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 ++ F++ L + + H+L+ VLR + GD + L + +L++I + G+ + Sbjct: 1 MQHYFINENLTNNQRVILPLEIGHHLSKVLRAEVGDKVQLVSVTHLVYLAEIGSIDGRQV 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 ++ + +V + K N+ + ++QK+ E+G I + I ++ Q Sbjct: 61 TATIQKELHMNVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 + + R+ +SAAEQ +P + +L L K + ++V +E N Sbjct: 121 SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKR-PFDVKLVAYEEAAKDGEESN 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L I ++ + GPEGG SEE L +++ LGPRILR++TA + ++ Sbjct: 180 LAQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISA-GLGPRILRTETAPMYFLSS 238 Query: 237 VQA 239 V Sbjct: 239 VSV 241 >gi|329770528|ref|ZP_08261906.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325] gi|328836277|gb|EGF85946.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325] Length = 249 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64 +++ FV+ + ++ + S + +++ V+R D + + + +++ I + + Sbjct: 1 MQQYFVNKNFNLNSEYELSKEDSNHIVRVMRKNINDKVFIVFNDEIKYICNIIDNNIDRV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 I E S ++ + P+K ++++Y++QK E+G+ I + Sbjct: 61 IVEPFEKVEESNELKTKITVAIPPLKNDKIEYLLQKLTELGVFNIILFNSERNIAKIKAD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---- 174 + + R AAEQ +P + +L+ L+ + V A E Sbjct: 121 KINSKLKRWDKILKEAAEQSKRNIIPTLSYVNSLQELINTTTNMDYKVVAYEKESHNKNN 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 EN L + ++ + G EGG E L F +SLG RILR++TA + + Sbjct: 181 ENLKALLKDDLNNKSIIAVFGSEGGISENEINILTKSEF-KMVSLGKRILRAETAPLYLV 239 Query: 235 ALVQA 239 + + Sbjct: 240 SCIAY 244 >gi|225175075|ref|ZP_03729071.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT 1] gi|225169251|gb|EEG78049.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT 1] Length = 246 Score = 214 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + R F + + D H+L VLR G + L + K + I+ V + Sbjct: 1 MSRFFYGPGQVHGDEVILTDDDAHHLLRVLRASVGQEVELCDDKGSCRRAVIAGVDHGEV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNT 120 R ++ ++ F +K + ++++QK+ E+G P + + + Sbjct: 61 RCRLGHELPDSEAVIRFYLAFGVLKGEKTEFILQKATELGAAGFFPFTSERSVVRPDKKA 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R + AA Q +P + PP +L ++VF E+ + Sbjct: 121 EKIQKRWQKIIHGAAAQSRRAIIPQLNPPCKWPDVLDLSKTFDKVVFFWESEEDRPLAKS 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L + V ++ GPEGG+ ++E L L + P++LGPRILR Sbjct: 181 LEGCSRGDRVLLITGPEGGFSAKEAAALGKLG-IEPVTLGPRILR 224 >gi|310818984|ref|YP_003951342.1| hypothetical protein STAUR_1711 [Stigmatella aurantiaca DW4/3-1] gi|309392056|gb|ADO69515.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 7/228 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RLFV P T+ SGD++HYL HVLR+ EG ++ +F+G + ++++ V Sbjct: 1 MVRLFVPLPEHPPTEVLLSGDRHHYLLHVLRLSEGASLEVFDGTGRAFEARVAAVDAREA 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +RS + + + K ++L++++QK E+G A PV T + + Sbjct: 61 RLTLGAARSTPPRRALSVLQGLPKGDKLEWVLQKGTELGAAAFYPVDTARSVVKLEPKRA 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R AA QC +P ++PP L + Q++ DE + E Sbjct: 121 GERTLRWEKIVEEAARQCRRNDVPQVHPPAALLDRARALPPGTQLLVLDEEETAVPLGEA 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A A VA+++GPEGG EE L +L ++LG ILR++T Sbjct: 181 FRACAPGAPVALVVGPEGGLTREEVAALRALG-ARGVTLGALILRTET 227 >gi|319403717|emb|CBI77302.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 195 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 87/179 (48%), Positives = 111/179 (62%), Gaps = 1/179 (0%) Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 ++ Q R Q SD+ Y F+P+K RLDY+IQK+VEMG+ + PVIT +TQ T NM Sbjct: 2 VARLIRQERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVITHHTQVTRINMA 61 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ I A+EQC IL+LP P +LE L+NWD + F DE S N + L Sbjct: 62 RIEANIIEASEQCGILSLPKCAPAVSLETFLENWDKAHALFFCDELNESYNPIPLLRKHG 121 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P + +LIGPEGG+ EE+ L PFV +SLGPRILR+DTAAVAA+ LV A GDW Sbjct: 122 TKP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNATMGDW 179 >gi|116510923|ref|YP_808139.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris SK11] gi|116106577|gb|ABJ71717.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris SK11] Length = 250 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 13/245 (5%) Query: 9 RLFVDFPLC-IKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV L I + H++ V+R + GD + L + LS+I Sbjct: 4 QYFVFKELPKIGEKFTIENQAAAHHIFTVMRAQAGDQLRLVFEEGKIGLSEIISPADQSV 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNT 120 +E + S V K ++LD++++KS E+G AI V + Sbjct: 64 RLIELLTDSSELPVQVTVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177 +++ + AAEQ +P I L + + Q++ A E Sbjct: 124 TKKQEKLEKVALGAAEQSRRQLIPKIQLFDQFSRLTEQFSDFDQVLVAYEESAKMGETSM 183 Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++ V I+ GPEGG +E +L + LGPRILR++TA + A++ Sbjct: 184 FKQALTELSANQKVLIIFGPEGGISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSS 242 Query: 237 VQAIC 241 + A Sbjct: 243 ISAYF 247 >gi|307127980|ref|YP_003880011.1| hypothetical protein SP670_1859 [Streptococcus pneumoniae 670-6B] gi|306485042|gb|ADM91911.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] Length = 247 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELDDNVELPVQVTISSGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF----ADETCGSEN 176 ++++ + AAEQ +P I+ L D +I+ A + + Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + + + + GPEGG E E + V LGPRILR++TA + A++ Sbjct: 180 LIKAVTGLEKGAKLLFIFGPEGGLSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAIC 241 + + Sbjct: 239 LSVLL 243 >gi|257455067|ref|ZP_05620310.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus SK60] gi|257447539|gb|EEV22539.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus SK60] Length = 294 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 110/281 (39%), Gaps = 53/281 (18%) Query: 7 LKRLFVDFP--LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F + P L + + + D +H+ VLR G+ L F+G+ GE+ + V K Sbjct: 1 MRRFFYNQPNLLQVGSTVPLTEDIFHHWCKVLRASMGEQALFFDGQGGEYTVTLKDVTKK 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + + + + R+DY IQK+ E+G+ +I+ + +++ + Sbjct: 61 QALVTINDFNPINRALPFTVNIALVMSRGERMDYAIQKATELGVSSIQLLTSQHGEVRLK 120 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD------HNCQIVFA-- 168 + + +SA EQC + +P + P + + + +++ A Sbjct: 121 ADQADKKLAHWQQIAVSACEQCGLNIVPNLLAPKAVSDWIDEPAGVPTSTNVTKLILAVP 180 Query: 169 ------------------DETCGSENSLEKLHAIAHIPN----------------VAILI 194 + + N +E + PN +LI Sbjct: 181 PDDSGVVTSCNQIEGSDIEHSDIEHNDIEPIAPYTPYPNPLPHITNQFRQCSLAQFWLLI 240 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 G EGG+ ++E F+ P +G R+LR++TA V A++ Sbjct: 241 GAEGGFSAQEITQAIERGFI-PWQIGERVLRTETAPVVALS 280 >gi|307564915|ref|ZP_07627435.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A] gi|307346355|gb|EFN91672.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A] Length = 265 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 18/243 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 +V +K + ++ + VLRMK+GD + L +G + ++++ F Sbjct: 7 FYVP---DVKNSTELPAEEMVHAVRVLRMKQGDELFLMDGAGYFYRAQVTMTSAKHCFYT 63 Query: 70 EYQSRSQTKQS--DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ Q K + +P K R++++ +K E+G+ I + R+++ +DR Sbjct: 64 IKEALYQKKNWRGHIHLAIAPTKDIGRIEWLAEKVTEIGIDEITFLSCRFSERKQLRIDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----------NCQIVFADETCGSEN 176 + ISA +Q P + T+ ++ N I E ++ Sbjct: 124 IEKIIISAMKQSRKGWKPIVNEMTSFGDFIRKVSATTYSNKKPSINKFICHCYEEIKKKD 183 Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + +V ILIGPEG + EE + + F ++LG LR++TA ++A+ Sbjct: 184 LFSLLTKRNALERDVLILIGPEGDFSVEEVDLALANGF-QSVTLGDSRLRTETAGLSAVT 242 Query: 236 LVQ 238 + Q Sbjct: 243 MAQ 245 >gi|171060614|ref|YP_001792963.1| 16S ribosomal RNA methyltransferase RsmE [Leptothrix cholodnii SP-6] gi|170778059|gb|ACB36198.1| protein of unknown function DUF558 [Leptothrix cholodnii SP-6] Length = 247 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 14/238 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RLFVD PL + VLRM+ G+ +++FNG+ GEW +I+ +G+S Sbjct: 4 RLFVDTPLQAGLDLSLPAGAARH-VQVLRMQPGEELIVFNGQGGEWRVRIARMGRSEVQV 62 Query: 69 VEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + Q ++ V + R D++I+K+ E+G I P + + + Sbjct: 63 LVEQFVDVDRELALHVTLVAGMPANERFDWLIEKATELGAAEIVPTMCERSVLRLSGERA 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN---CQIVFADETCGSENS 177 + + ISAA+QC +P I +L + Q++ + Sbjct: 123 QKKREHWQGIAISAAQQCGRTRVPHIAAVRSLSEERAGESADTPVTQLLLSLADAQPLGR 182 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 A P + I GPEGG+ E+ L P SLGPR+LRS+TA +A ++ Sbjct: 183 RLAARADTGAP-LRIYSGPEGGFTEAEERLLRQ-GGAQPTSLGPRVLRSETAPLAVLS 238 >gi|58698200|ref|ZP_00373121.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of Drosophila ananassae] gi|58535281|gb|EAL59359.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of Drosophila ananassae] Length = 228 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 11/228 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + ++ Q + ++ + +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ +++P I PP L + N V DET ++ L Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVL------KGK 176 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 NVAI++GPEGG+ S E + F LSLG RILR DTA +AA+ Sbjct: 177 KNVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVLAALT 222 >gi|260221803|emb|CBA30730.1| Ribosomal RNA small subunit methyltransferase E [Curvibacter putative symbiont of Hydra magnipapillata] Length = 241 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 11/230 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS- 64 + R F L T + + VLR++ GD+I LF+G+ E+ + ++ +G+S Sbjct: 1 MPRFFCAAALVSDTALELPAGAARH-VQVLRLQPGDSITLFDGQSADEFDATVTRMGRSD 59 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + +V + ++ ++ + +R+D++++K+ E+G+ +I+P++T + Sbjct: 60 VAVQVGQRRTVAREPARQIHLAVGMPANDRMDWLVEKATELGVASIQPLMTERSVLKLSG 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ++ ++A EQC +P ++P TL LK+ I S Sbjct: 120 ERAEKKVAHWQSVAVAACEQCGGNMVPVVHPMQTLAQWLKSPSAQSDIPQRLLLSLRAGS 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + V L GPEGG S E+E + F +P SLGPR+LR++ Sbjct: 180 TPVASLPSGPAPVWFLSGPEGGLSSHEEEAAIAARF-SPASLGPRVLRAE 228 >gi|208779920|ref|ZP_03247264.1| conserved hypothetical protein [Francisella novicida FTG] gi|208744375|gb|EDZ90675.1| conserved hypothetical protein [Francisella novicida FTG] Length = 242 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F D + KT SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IKT + +IQK+ E+G+ I P+IT +T + Sbjct: 65 LEVIDKKHISNENNYITNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + A+ I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KVKSSANFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 + Sbjct: 240 V 240 >gi|186681306|ref|YP_001864502.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc punctiforme PCC 73102] gi|186463758|gb|ACC79559.1| protein of unknown function DUF558 [Nostoc punctiforme PCC 73102] Length = 249 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 17/251 (6%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S L+R+ + + Q + +Q HYL VLR++EGD + +GK WL+++ G+ Sbjct: 1 MSQLQRIAIAPSQFQQGQILLTKEQQHYLGRVLRLREGDRFIAMDGKGKWWLAQL--AGE 58 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +E + + + K N D +++ E+G+ I PV++ T + Sbjct: 59 QAQV-LESLLVETELPVSITLMVALPKGNGFDEVVRCCTELGVTCIAPVLSDRTLLDPSP 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENS 177 ++R R AAEQ + +P I P L + + E Sbjct: 118 QKLERWRRIAAEAAEQSERSFVPTILEPVAFNTGLSLVIGHLSFANSQQYICEARAEFPH 177 Query: 178 LE-------KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 L+ ++ + + I GPEGG+ ++E E + F P+SLG RILR+ TA Sbjct: 178 LKHCLQHKGQMTSDKGQETIVIATGPEGGWTTQEIENAIASGF-QPVSLGRRILRAVTAP 236 Query: 231 VAAMALVQAIC 241 V A++L+ A C Sbjct: 237 VVALSLITASC 247 >gi|224826821|ref|ZP_03699921.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002] gi|224601041|gb|EEG07224.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002] Length = 242 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 16/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F+D L + VLR+ GD I LFNG+ GE+ + +S V K Sbjct: 1 MPRFFLDGELAPGMTLALPDSVLRH-VQVLRLNPGDAITLFNGRGGEYPATLSRVLKRDA 59 Query: 67 FKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 V E+ ++ + + +++++ +QK VEMG+ +P+ + + Sbjct: 60 ECVLGEFADVARESPVWLGLAQAISGGDKMEFTLQKGVEMGVSVFQPLTAERSVVRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 + R + I+A EQC ++P + P TL L+ + + ++V + + Sbjct: 120 RADKRVARWQEIVIAACEQCGRNSVPEVRPILTLAEWLRELPEADARLVLSP-----LGT 174 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + ++ GPEGG + E+ + TPL LGPRILR++TAA+AA+A + Sbjct: 175 QRLADIAAAPASAWLMAGPEGGLSAREEGAAIEAGW-TPLKLGPRILRTETAALAAVAAI 233 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 234 QTVWGDY 240 >gi|188585812|ref|YP_001917357.1| protein of unknown function DUF558 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350499|gb|ACB84769.1| protein of unknown function DUF558 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 240 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 20/230 (8%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY-QSRSQTKQSDVQYIFSPI 89 + VLR+K GD ++L +GK G S I+ +G+ I F++E ++ + S I Sbjct: 1 MTRVLRLKIGDRVILLDGKGGACFSFINRLGEGQIEFELEEPLIDNKEAPIRITLAQSLI 60 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQ---------NTHYNMDRVRTYTISAAEQCDI 140 K + ++++QK E+G P+I++ T+ + R R +AAEQC Sbjct: 61 KKDNFEFVLQKGTELGATEFYPLISQRTEVNLLNKSDKKVSKKLTRWREIVKNAAEQCQR 120 Query: 141 LTLPFIYPPTTLEFLLKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193 LP I+ P E LKN + + + E + + L I P+ IL Sbjct: 121 QVLPLIHYPVNFEKYLKNNNENSNNNGSRLKIMCHEQENT-PLKKVLKTIETPPSSAIIL 179 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 IGPEGG+ E + F + +S+GPRILR++TA + A++ + D Sbjct: 180 IGPEGGFSHNEVDLAREQGF-SSVSMGPRILRAETAGIVAVSAILYELAD 228 >gi|42521009|ref|NP_966924.1| hypothetical protein WD1212 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630878|ref|YP_002727669.1| putative methyltransferase [Wolbachia sp. wRi] gi|225677207|ref|ZP_03788200.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|42410750|gb|AAS14858.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590731|gb|EEH11965.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225592859|gb|ACN95878.1| putative methyltransferase [Wolbachia sp. wRi] Length = 228 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 11/228 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + ++ Q + ++ + +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ +++P I PP L + N V DET ++ L Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVL------KGK 176 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 NVAI++GPEGG+ S E + F LSLG RILR DTA VAA+ Sbjct: 177 KNVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVVAALT 222 >gi|298373262|ref|ZP_06983251.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274 str. F0058] gi|298274314|gb|EFI15866.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274 str. F0058] Length = 232 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 12/234 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 + L + ++ ++ VLRM+EGD + + +GK + ++I Sbjct: 4 FYSPNVLETNA---LTEEESYHCTKVLRMREGDVVQVTDGKGNMYEAEIVLPDTVHTMLA 60 Query: 70 EYQSRSQ--TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 S ++ + +P K +R +++++K+VE+G+ I P++ ++++ +R Sbjct: 61 IRSVMSDFGKRRYRLHLAVAPTKNIDRFEWLVEKAVEIGVDRITPLLCQHSERRTVKTER 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + ++AA+Q +P I P T + + D + V EN + A Sbjct: 121 LEKIALAAAKQSLKAYIPKIDPITHFAEITAHSDDEQRFVAHCYDMPKENLFD---ACRP 177 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA--MALVQ 238 + +LIGPEG + +EE E + F +SL LR++TA + A +A V+ Sbjct: 178 RQSTVVLIGPEGDFSTEEVELALTAGF-RSVSLSDSRLRTETAGIVAANIAAVR 230 >gi|118497856|ref|YP_898906.1| hypothetical protein FTN_1271 [Francisella tularensis subsp. novicida U112] gi|194323829|ref|ZP_03057605.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|118423762|gb|ABK90152.1| conserved protein of unknown function [Francisella novicida U112] gi|194322193|gb|EDX19675.1| conserved hypothetical protein [Francisella tularensis subsp. novicida FTE] gi|332678571|gb|AEE87700.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf. novicida Fx1] Length = 242 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F D + KT SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IK+ + +IQK+ E+G+ I P+IT +T + Sbjct: 65 LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + + I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 I Sbjct: 240 I 240 >gi|304384219|ref|ZP_07366634.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973] gi|304334720|gb|EFM00998.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973] Length = 246 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 11/236 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 +V + +Q + ++ + VLR+ GD I L +GK + +++S V Sbjct: 7 FYVPDAV---SQTELPQEEAVHALRVLRLNVGDEIFLMDGKGVFFRAEVSMTSSKHCSYV 63 Query: 70 EYQSRSQTKQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +S Q + +P K R+++M +K+ E+G A+ + +Y++ DR Sbjct: 64 IKESMPQCPAWRGHIHLAIAPTKMTERMEWMTEKATEVGFDALTFLHCQYSERKTLRTDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLHAIA 185 + ISA +Q LP ++P + + + + + + ++ ++ Sbjct: 124 MERIAISAMKQSRKAWLPAVHPLMSFKDFIAQPHCGRKFICHCYDEIDRKDFFTEISREP 183 Query: 186 HIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +V +LIGPEG + +E + FV+ +SLG LR++TA ++A+ + Q Sbjct: 184 VDDADCDVCVLIGPEGDFSLDEVKQAIGCGFVS-VSLGQSRLRTETAGLSAVMMAQ 238 >gi|331270009|ref|YP_004396501.1| hypothetical protein CbC4_1830 [Clostridium botulinum BKT015925] gi|329126559|gb|AEB76504.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum BKT015925] Length = 251 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 96/257 (37%), Gaps = 31/257 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F+ G+ ++ VLR+KEG+ + + N E+L I Y+ K + Sbjct: 1 MHKFFISEDKIFSDLAVIEGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKV 60 Query: 66 RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 K VE + +V K+ ++D + QK E+G+ I P++T Sbjct: 61 EVKLVEELKVNNEPPIEVYLFQGLPKSTKMDLITQKCTELGIKEITPIVTSRVSSSINDI 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR A +Q +P + T + IV E + Sbjct: 121 KRESKKIDRWNRIAFEACKQNKRTLIPIVNDITDFDGFTAKLKDMDLIVVPYENAENYGI 180 Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEE----------KETLHSLPFVTPLSLGPRILRS 226 + + + +AI+I +L + ++LGPRILR+ Sbjct: 181 KQMTKGLKGEVKKIAIVI----------GPEGGFEEEEITSLKNKG-AHIVTLGPRILRT 229 Query: 227 DTAAVAAMALVQAICGD 243 +TA +AL+ GD Sbjct: 230 ETAGFTCLALLMYELGD 246 >gi|56708314|ref|YP_170210.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. tularensis SCHU S4] gi|110670785|ref|YP_667342.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. tularensis FSC198] gi|134301732|ref|YP_001121700.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. tularensis WY96-3418] gi|187931804|ref|YP_001891789.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. mediasiatica FSC147] gi|224457434|ref|ZP_03665907.1| 16S rRNA m3U1498 methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370797|ref|ZP_04986802.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875134|ref|ZP_05247844.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604806|emb|CAG45885.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321118|emb|CAL09268.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|134049509|gb|ABO46580.1| hypothetical protein FTW_0692 [Francisella tularensis subsp. tularensis WY96-3418] gi|151569040|gb|EDN34694.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|187712713|gb|ACD31010.1| conserved hypothetical protein [Francisella tularensis subsp. mediasiatica FSC147] gi|254841133|gb|EET19569.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159545|gb|ADA78936.1| hypothetical protein NE061598_07235 [Francisella tularensis subsp. tularensis NE061598] Length = 242 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 124/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F D + KT SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IK+ + +IQK+ E+G+ I P+IT +T + Sbjct: 65 LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + + I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 + Sbjct: 240 L 240 >gi|311747456|ref|ZP_07721241.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1] gi|126574815|gb|EAZ79186.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1] Length = 234 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 12/239 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ F + + +L VLR +EGD I + +GK + K+ K Sbjct: 1 MQLFF--QENITPPKITLDPIESKHLTRVLRKREGDIIHVTDGKGSIYECKLVDSNPKKS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + + +P K+ +R+++MI+K E+G + + + ++ + Sbjct: 59 ILQIISSEKVPADDYYIHLAIAPTKSPDRMEWMIEKITEIGFHELTLLSSMNSERSFLKT 118 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKL 181 +R+ ISA +Q P I T L+ N D I + DE + Sbjct: 119 ERLHKKMISACKQSLKFHTPKINQTTDLKEFFNNSDFEDFQKFIAYVDENHDHH----LM 174 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 N ILIGPEG + +E E F P+SLG LR++TA +AA+ ++Q + Sbjct: 175 DVAKPQANYLILIGPEGDFSPQEIEKAFEFNF-KPVSLGKSRLRTETAGLAAVQMLQVL 232 >gi|262283462|ref|ZP_06061228.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260953|gb|EEY79653.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 247 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 14/245 (5%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ P D ++ V+R+KEGD + L + L+++ + Sbjct: 1 MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 +E + + V K ++L+++ QK E+G AI V + Sbjct: 59 LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGACAIWAFPADWSVAKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ AAEQ +P + L I+ A E E Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAALAAFDCIIVAYEEAAKEGESA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L +A V + GPEGG EE V+ LGPRILR++TA + A+ Sbjct: 179 ALVRALSGLAVGAKVLFIFGPEGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALT 237 Query: 236 LVQAI 240 V + Sbjct: 238 AVSVL 242 >gi|171909516|ref|ZP_02924986.1| hypothetical protein VspiD_00050 [Verrucomicrobium spinosum DSM 4136] Length = 253 Score = 213 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 20/252 (7%) Query: 6 HLKRLFVDFP--LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 L R + GD+ + V+R GD I F+G +I G Sbjct: 3 ALARFHIPPSHWQPAGGTLVLDGDEARHCTSVMRHTAGDEITTFDGAGISARCRIVATTG 62 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K++ +V + + + S K + ++++++K+VE+G+ AI PV+T T Sbjct: 63 KTVELEVVETLSTPAPAVSISLVQSVPKGSNMEWIVEKAVELGVNAIHPVLTARTV---V 119 Query: 123 NMD---------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 +D + + + A +QC LP I+PP ++ + + A Sbjct: 120 KLDKKEAAKKQEKWQRLALEACKQCGQNWLPVIHPPAPYAEVMAGLPPHDLRIIAAIQDD 179 Query: 174 SENSLEKLHAIAHIPNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S+ E L A +V + +GPEG + E +T V P+SLGP ILR +TA Sbjct: 180 SKPLKEILKDRAKQGSVISSTLLCVGPEGDFTPAEYQTARDHGCV-PMSLGPIILRVETA 238 Query: 230 AVAAMALVQAIC 241 + ++++ Sbjct: 239 TMYGLSVLGHEL 250 >gi|189460815|ref|ZP_03009600.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136] gi|189432389|gb|EDV01374.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136] Length = 232 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 7/219 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80 + ++ + VLR+ GD I+L +GK + + IS GK + KV E + + Sbjct: 14 ELPEEEAGHCLRVLRLTVGDEIMLTDGKGCFYRAAISAATGKRCQVKVNEVIPQEPFWKG 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R+++ ++K+ E+G + + R+++ +R+ +SA +Q Sbjct: 74 HLHLAMAPTKNMDRIEWFVEKATEIGFDELSFLNCRFSERKVIKTERIEKIVVSAIKQSL 133 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 P + + + Q A G + L+ + + + +LIGPEG Sbjct: 134 KARKPVVNEMVDFGRFM-QREFAGQKFIAHCYEGEKPLLKDV--LQPGEDAVVLIGPEGD 190 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE E ++ F +SLG LR++TAA+ A+ + Sbjct: 191 FSREEVEKAEAMGF-RSISLGKSRLRTETAALVAVHTMN 228 >gi|86608181|ref|YP_476943.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556723|gb|ABD01680.1| conserved hypothetical protein TIGR00046 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 289 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 12/244 (4%) Query: 5 SHLKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S L RL +D + + +G Q HYL V R++ GD L+ +G W ++ G Sbjct: 22 SALPRLAIDPAQRDPSGVLRLTGPQQHYLQRVRRLRPGDLFLVLDGSGKLWAARWQAQGS 81 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 I +VE R + + +K D ++++ E+G+ I P++T T + Sbjct: 82 QIVGEVETLPR--ELPVFLHLGLAVVKGQGFDEVLRQVTELGVARITPLLTERTVLEPGS 139 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI----VFADETCGSENS 177 +R + AAEQC+ L P + PPT L + EN+ Sbjct: 140 GRQERWQKIVREAAEQCERLRWPQVDPPTPWTSWLAELQAVRATRTESFWWGIAVARENA 199 Query: 178 LEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + A+ IP +AI IGPEGG+ E+ V+ +SLGP ILR+ TAAV A + Sbjct: 200 PLLVQALPKLQIPALAIAIGPEGGWTVAERRQAEEYGGVS-VSLGPTILRATTAAVVATS 258 Query: 236 LVQA 239 + A Sbjct: 259 QIAA 262 >gi|55820236|ref|YP_138678.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus thermophilus LMG 18311] gi|55822127|ref|YP_140568.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus thermophilus CNRZ1066] gi|55736221|gb|AAV59863.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738112|gb|AAV61753.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] Length = 247 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 94/245 (38%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + ++ +V+R+ E D ++L + L+++ + Sbjct: 1 MQQYFIKG-QVENPVIIKDKNTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+ + QK E+G AI V+ + Sbjct: 60 EVIEDLNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 D++ + AAEQ +P + L H +I A E L Sbjct: 120 AKKEDKLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELAT 179 Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + + GPEGG E + V + LGPRI+R++TA + A++ Sbjct: 180 LARELAKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|224024059|ref|ZP_03642425.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM 18228] gi|224017281|gb|EEF75293.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM 18228] Length = 232 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 9/222 (4%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80 + ++ + VLR+ GD ++L +GK + + IS K + K+ E + + Sbjct: 14 ELPEEEAGHCLRVLRLGMGDEVMLTDGKGCFYKAVISAATNKRCQVKILETIPQEPFWKG 73 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 + +P K +R++++ +K+ E+G + + R+++ +RV +SA +Q Sbjct: 74 HLHLALAPTKNMDRIEWLAEKATEIGFDELSFLNCRFSERKVIKTERVEKIVVSAVKQSL 133 Query: 140 ILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P + T +F+ +++ I E G + L+ + + + +LIGPEG Sbjct: 134 KARKPVVNEMTDFMKFMERDFPGQKFIAHCYE--GEKPLLKDV--LVPGEDALVLIGPEG 189 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + EE F +SLG LR++TAA+ A+ + I Sbjct: 190 DFSPEEVARAEEKGF-HAVSLGKSRLRTETAALVAVHTMNLI 230 >gi|125622990|ref|YP_001031473.1| hypothetical protein llmg_0111 [Lactococcus lactis subsp. cremoris MG1363] gi|124491798|emb|CAL96718.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300069731|gb|ADJ59131.1| 16S ribosomal RNA methyltransferase RsmE [Lactococcus lactis subsp. cremoris NZ9000] Length = 250 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 13/245 (5%) Query: 9 RLFVDFPLC-IKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV L I + H++ V+R + GD + L + LS+I Sbjct: 4 QYFVFKELPKIGEKFTIENQAAAHHIFTVMRAQAGDQLRLVFEEGTIGLSEIISPADQSV 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNT 120 +E + S V K ++LD++++KS E+G AI V + Sbjct: 64 RLIELLTDSSELPVQVTVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177 +++ + AAEQ +P I L + + Q++ A E Sbjct: 124 TKKQEKLEKVALGAAEQSRRQLIPKIQLFDQFSRLTEQFSDFDQVLVAYEEAAKMGEKSM 183 Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++ V I+ GPEGG +E +L + LGPRILR++TA + A++ Sbjct: 184 FKQALTELSANQKVLIIFGPEGGISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSS 242 Query: 237 VQAIC 241 + A Sbjct: 243 ISAYF 247 >gi|306824715|ref|ZP_07458059.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432926|gb|EFM35898.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 247 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 12/237 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V Sbjct: 1 MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVDVENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELVDNVELPIQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 ++++ + AAEQ +P I L D I+ A E E Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIQLFEKKADFLAQLDQFDSIIVAYEESAKEGEVAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L+ + + + + GPEGG E E+ + V LGPRILR++TA + A Sbjct: 180 LLQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYA 235 >gi|57239217|ref|YP_180353.1| 16S ribosomal RNA methyltransferase RsmE [Ehrlichia ruminantium str. Welgevonden] gi|57161296|emb|CAH58217.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 238 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V + + K HY++ V+R + D + +FNGKDGEW+ +I + +I+ + Sbjct: 9 RLYVPDSISKHSIIKLDTLASHYISKVMRATKCDYVKIFNGKDGEWIGEICELSNNIKIR 68 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 ++ +R Q K ++ F +K L +I+++ EMG+ ++P+ T++ ++ N+D+ R Sbjct: 69 IDKLTRKQVKSKNLTLCFGIVKGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCR 128 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + I A+EQC+ L +P I P + L K N + DET + E L + Sbjct: 129 KWAIEASEQCERLDIPQISHPISFTDLKKLDTANINFIICDETGNGKKPAEILT---NKN 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ I++GPEGG+ SEE + F LSLG RILR DTA V+A+A V Sbjct: 186 NIYIIVGPEGGFSSEELDFA--YTFCNGLSLGTRILRVDTAVVSALAYVN 233 >gi|159899629|ref|YP_001545876.1| 16S ribosomal RNA methyltransferase RsmE [Herpetosiphon aurantiacus ATCC 23779] gi|159892668|gb|ABX05748.1| protein of unknown function DUF558 [Herpetosiphon aurantiacus ATCC 23779] Length = 247 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 10/242 (4%) Query: 9 RLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R FV + H +VLR++ G +I L +G ++++++ + K Sbjct: 6 RFFVPAEAIQGETLAVAERELLHQWNNVLRLRVGQHIALLDGLGMGYIAELTSLNKREAQ 65 Query: 68 KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYN 123 Q + + +V + + R + +QK E+G A P++ +Q + Sbjct: 66 GRILQRYAANGEPSINVTLYLALTRGERFEIALQKCTELGATAFVPLLCERSQADVSATK 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R + AAEQ LP ++ T+ L + + G S + A Sbjct: 126 RERWQRIIREAAEQAGRGRLPSLHEAQTVAQALPQARGHLLLA----ETGQTLSFKAALA 181 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + +AI GPEGG+ E E V+ +SLG RILR++TA +AA+A V Sbjct: 182 LEPRQELAIWSGPEGGWSDNELEAARQAGLVS-VSLGSRILRAETAPIAALAAVMFQFDQ 240 Query: 244 WY 245 W+ Sbjct: 241 WF 242 >gi|254374666|ref|ZP_04990147.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572385|gb|EDN38039.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 242 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F D + KT SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIIAIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IK+ + +IQK+ E+G+ I P+IT +T + Sbjct: 65 LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + + I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 I Sbjct: 240 I 240 >gi|291458017|ref|ZP_06597407.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419349|gb|EFE93068.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078 str. F0262] Length = 268 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 121/269 (44%), Gaps = 33/269 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + F + + + + G+ +L +VLR + G+ +L+ +G+ ++ +++ +G + I Sbjct: 1 MHHFFAEAADISEREVRLRGENLRHLKNVLRARPGERVLISDGEGTDYECEVAELGEEEI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ ++ +D+ K++++++++QK+VE+G+ I P+ +R T Sbjct: 61 LLRICFREEIHELPADIWLFQGLPKSDKMEFILQKAVELGVRGIVPLESRNTVVRLNPGK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178 R + +AA+Q +P + P + L D + +++ + G+E + Sbjct: 121 AAAKRQRWQAIAEAAAKQSKRSIIPEVMLPMRWKDALSLLPDFSLRLIPYENARGAERTR 180 Query: 179 EKLHAIAHI------------------------PNVAILIGPEGGYHSEEKETLHSLPFV 214 E L + +A+ IGPEGG+ E + + Sbjct: 181 ELLLGLRKPWKEAARPAEAGAGAENEKKTPDRRRKIAVFIGPEGGFSEE-EIAEARAAGM 239 Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGD 243 LSLG RILR++TAA+ A++L+ D Sbjct: 240 ECLSLGKRILRTETAALCALSLLMLFLED 268 >gi|281423446|ref|ZP_06254359.1| RNA methyltransferase, RsmE family [Prevotella oris F0302] gi|281402782|gb|EFB33613.1| RNA methyltransferase, RsmE family [Prevotella oris F0302] Length = 240 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 104/233 (44%), Gaps = 8/233 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 +V + ++ + VLR++ GD++ L +G+ + +++S K + Sbjct: 7 FYVPDAASTN---ELPAEEATHALRVLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYT 63 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E + +T + + +P K +R++++ +K+ E+G + + +++ DR Sbjct: 64 IKENLPQQKTWRGHIHLAIAPTKNIDRMEWLAEKATEIGFDELSFLHCAFSERKVLRADR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185 + +SAA+Q +P + + + + + I E ++ ++ Sbjct: 124 IEKIVVSAAKQSRKPWMPQVNTLESFKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDNQ 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +L+GPEG + +E + + + +SLG LR++TA + A+ + Q Sbjct: 184 KNEQITVLVGPEGDFSIDEVRLAMAQGYES-ISLGESRLRTETAGLMAVTMAQ 235 >gi|330983201|gb|EGH81304.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 201 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 16/209 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK + Sbjct: 1 MSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRV 59 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 ++ Q + + + R+D+ IQK+ E+G+ I P+I+ + Sbjct: 60 HVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKTTELGVSEITPIISERCEVRLKDE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 120 RAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------VA 172 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKET 207 E L + ++A LIGPEGG + E Sbjct: 173 EPLTSHDKPASLAFLIGPEGGLNDAEVAQ 201 >gi|312144013|ref|YP_003995459.1| protein of unknown function DUF558 [Halanaerobium sp. 'sapolanicus'] gi|311904664|gb|ADQ15105.1| protein of unknown function DUF558 [Halanaerobium sp. 'sapolanicus'] Length = 250 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 122/251 (48%), Gaps = 15/251 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + + F+ I + G+ Y++L + LR+ GD +++ + + +KI S+ +S Sbjct: 1 MNKFFIKDSAAIGEKISIQGNDYNHLKNSLRLNIGDRVIVSDKDGFDLEAKIVSFQEESA 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +V + +S + Q +V K ++D +++K+ E+G A+ P+ + + + Sbjct: 61 ELEVINREKSSVEAQLNVVLAQGLPKKRKMDLIVEKATEIGFKAMIPLESERSIVRYNHK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + R + +AA+Q +P I Y ++L+ L +D I++ DE S Sbjct: 121 KKEKKLKRWQRVAEAAAKQSGRSIIPEIKNFYSTSSLKDLKDQFDF-RLILWEDENKFSL 179 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + + ++ ++IGPEGG+ +E E L + ++LGPRI+R++TA +AA+ Sbjct: 180 KNFFNQNNVKSDASILLIIGPEGGFSEDEVEKLKNDLDAETITLGPRIMRTETAGIAALC 239 Query: 236 LVQA---ICGD 243 + GD Sbjct: 240 CLLYEKGELGD 250 >gi|288800066|ref|ZP_06405525.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299 str. F0039] gi|288333314|gb|EFC71793.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299 str. F0039] Length = 242 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 105/236 (44%), Gaps = 8/236 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 + L + ++ + + VLR++ GD ++L +GK ++I + KS ++ Sbjct: 7 FYAPSALATN---ELPSEEAIHASKVLRLQSGDEMVLIDGKGSFHQAEIVNITKSRCEYQ 63 Query: 69 VEY-QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + Q +T +++ +P K +R++++ +K E+G + + R+++ +R Sbjct: 64 ITHSQEFPKTWNNNIHLAIAPTKNIDRIEWLTEKITEIGFDELSFLNCRFSERRVVKNER 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185 + +SAA+Q +P + + + + + I + L+ Sbjct: 124 LERIIVSAAKQSRKSWMPQLNEMVSFKEFVSIPHKGLKFIAHCYNQFPKIDLCSTLNKEE 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +V IL+GPEG + +E E F +SLG LR++TA + A+ + Q Sbjct: 184 IKEDVLILVGPEGDFSVDEVEMALKNGF-QSISLGENRLRTETAGLVAVTIAQFAL 238 >gi|89899025|ref|YP_521496.1| 16S ribosomal RNA methyltransferase RsmE [Rhodoferax ferrireducens T118] gi|89343762|gb|ABD67965.1| protein of unknown function DUF558 [Rhodoferax ferrireducens T118] Length = 260 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 31/251 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG------------KDGEW 54 + R + L + VLR++ GD+I LFNG + GE+ Sbjct: 1 MPRFYCPTSLRCGDLLDLPASAARH-VQVLRLQPGDSITLFNGGPGWDERDSEHTQGGEF 59 Query: 55 LSKISYVGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112 + ++ +G+S ++ KV Y + + V R+D++++K+ E+G+ +I+P+ Sbjct: 60 EASVTRMGRSDVQVKVGAYHAVEREAAHRVHLAVGMPANERMDWLVEKATELGVASIQPL 119 Query: 113 ITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQ 164 +T + + ++ ++A EQC +P I+ TL +K Q Sbjct: 120 MTERSVLRLNPERAGKKQAHWQSVAVAACEQCGGNRVPVIHAVMTLAAWIKAQPAQASDQ 179 Query: 165 IVFADETCGSENSLEKLHAIAHIPN-------VAILIGPEGGYHSEEKETLHSLPFVTPL 217 + G+++ + A A + + L GPEGG E++ + F P+ Sbjct: 180 RLLLSLRPGAQSVRAAVKAFADPASAGAHTEAITFLSGPEGGLSPAEEDIALACGFA-PV 238 Query: 218 SLGPRILRSDT 228 +LG R+LR++T Sbjct: 239 TLGARVLRAET 249 >gi|254373211|ref|ZP_04988700.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570938|gb|EDN36592.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 242 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F D + KT SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IKT + +IQK+ E+G+ I P+IT +T + Sbjct: 65 LEVIDKKHISNENNYITNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + + I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 I Sbjct: 240 I 240 >gi|325262826|ref|ZP_08129562.1| RNA methyltransferase, RsmE family [Clostridium sp. D5] gi|324031920|gb|EGB93199.1| RNA methyltransferase, RsmE family [Clostridium sp. D5] Length = 245 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 30/254 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F + + G +++ +VLRMK G+ + +G E+L +I + Sbjct: 1 MHRFFTEPSRVHDQVIEIGGPDVNHMKNVLRMKPGEKAEISDGAGIEYLCEIDRYEEDAV 60 Query: 67 FKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 S S + K+++++ +IQK+VE+G+ I PV T + Sbjct: 61 ILRILSSAGEPAELPSKIFLFQGLPKSDKMELIIQKAVELGVHEIIPVATNRAVVKLDEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 +R + +SAA+QC +P + L+ D + ++ + G E + Sbjct: 121 KAAKKTERWNSIALSAAKQCGRSIIPQVAQVKNFGGALEYADGLDVVLIPYELAKGMEET 180 Query: 178 LEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + +I +V I I + + P++LG RILR++ Sbjct: 181 KRIISSIEPGKSVGIFIGPEGGFEEEE----------IQKAMGMG-ALPVTLGRRILRTE 229 Query: 228 TAAVAAMALVQAIC 241 TA ++++ Sbjct: 230 TAGFTILSVLMYHF 243 >gi|294673777|ref|YP_003574393.1| hypothetical protein PRU_1064 [Prevotella ruminicola 23] gi|294472516|gb|ADE81905.1| conserved hypothetical protein TIGR00046 [Prevotella ruminicola 23] Length = 231 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 101/225 (44%), Gaps = 5/225 (2%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + Q + D+ + VLR+K GD + L +G + ++++ + + Q Sbjct: 4 AENQTELPTDEAMHAMRVLRLKSGDELFLMDGVGNYFRAQVTVAATHHCYYEILEKLPQE 63 Query: 78 KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 Q + +P K +R+++M++K+ E+G+ + + ++++ + R+ +A Sbjct: 64 PQWKGHLHLGIAPTKMMDRMEWMMEKATEVGIDEVSFLNCKFSERRLVKLVRLDKIVTAA 123 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q P + L+ + I E ++L + + +L Sbjct: 124 VKQSHKAWKPQVNEMVHFNHFLEQPIQGRKYIAHCYEEVPRVELFDELRKPSDSQDATVL 183 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +GPEG + +E + + +V+ +SLG LR++TA +AA+ ++Q Sbjct: 184 VGPEGDFSIDEVKAAVAAGWVS-VSLGSARLRTETAGLAAVMMMQ 227 >gi|71065526|ref|YP_264253.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter arcticus 273-4] gi|71038511|gb|AAZ18819.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 294 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 107/290 (36%), Gaps = 56/290 (19%) Query: 7 LKRLFVD---------------FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD 51 ++R F L I + + H+ VLR GD +LF+G Sbjct: 1 MRRFFYAVNDHSNPSETTYPQLSSLSIGDSVELTESIVHHWCRVLRANIGDQGILFDGFG 60 Query: 52 GEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAI 109 GE+ ++ + K + + + + R+DY IQKS E+G+ AI Sbjct: 61 GEYQVQLLAISKKHATVTLLAHTHDDRSAATFTKIGLVMSRGERMDYAIQKSTELGVTAI 120 Query: 110 RPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK------ 157 + + + + + + + I+A EQC + P I P + LK Sbjct: 121 QLLSSHHGEVNLKPTQVEKKLAHWQQVAIAACEQCGLNRPPLILAPIAINDWLKPVTTTT 180 Query: 158 ------------------------NWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVA 191 + ++ + G + L P + Sbjct: 181 PVEMEAAVSPMVTTLSQDTYYQVLQQPADLRLQLSVPAAGQPAMPDSLLTTLQQPAPYIE 240 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +LIGPEGG EE + S+ F P +G R+LR++TA V A+A +QA+ Sbjct: 241 LLIGPEGGLSDEECKQAQSVGF-EPWQIGARVLRTETAPVVALATLQALL 289 >gi|325297370|ref|YP_004257287.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides salanitronis DSM 18170] gi|324316923|gb|ADY34814.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides salanitronis DSM 18170] Length = 235 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 9/231 (3%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK- 68 F + +KT+ ++ + VLR+ GD ++L +G + + I + GK + K Sbjct: 4 FYTPDIAVKTE--LPEEEAAHCLRVLRLTMGDEVVLTDGNGFFYKAVIDSIAGKRCQVKI 61 Query: 69 VEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 VE + + + +P K +R ++ +K+ E+G + + R+++ +R+ Sbjct: 62 VESIFQEPLWKGHLHVAMAPTKNIDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERI 121 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 +SA +Q P + + ++ D Q A G + L+ A+ Sbjct: 122 EKIVVSAVKQSLKARKPKVNEMIDFDKFVRQ-DFKGQKFIAHCYEGEKLLLK--DALDVR 178 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +LIGPEG + EE S F P+SLG LR++TAA+ A+ L+ Sbjct: 179 MDAVVLIGPEGDFSREEVALAESCGF-RPISLGKSRLRTETAALVAVHLMN 228 >gi|297852690|ref|XP_002894226.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340068|gb|EFH70485.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 295 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 10/243 (4%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F D P + G ++ ++A VLR+K+ D + LFNGK G I + K+ Sbjct: 52 LPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTG 111 Query: 66 RFKVEYQSRSQTKQSDVQYI----FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120 + + + +Q+ F +K R D++++K E+G ++ P++T + + Sbjct: 112 VDFIAQEDQKVILPQGIQWQVFAAFGTLKGGRADWLVEKCTELGASSVTPLLTERSSIIS 171 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ + +AA+QC L + PP + LL + + + A T + L Sbjct: 172 ENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFDTLLGHISKSKLCLVA--TAEATPLLNA 229 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +++ + +++GPEG + +E E + T + LGP LR +TA +A +A + + Sbjct: 230 VNSSTKETSGILIVGPEGDFTKKEVEMMLEAG-STAVGLGPHRLRVETATIALLATL-VM 287 Query: 241 CGD 243 D Sbjct: 288 WSD 290 >gi|15617012|ref|NP_240225.1| hypothetical protein BU410 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681764|ref|YP_002468150.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682319|ref|YP_002468703.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471466|ref|ZP_05635465.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387295|sp|P57488|RSME_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|25345375|pir||G84977 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039077|dbj|BAB13111.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622052|gb|ACL30208.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624607|gb|ACL30762.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086144|gb|ADP66226.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086718|gb|ADP66799.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087303|gb|ADP67383.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087813|gb|ADP67892.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 253 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 15/250 (6%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + + R++++ L + S + HY+ VLRMK D + +FN + +KI + K Sbjct: 9 NKKIPRIYIEDDLDLNQFYFLSDENRHYVTKVLRMKIEDILEIFNNTHYIFFAKIIDISK 68 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--QN 119 I ++ + +S + + K ++D+ IQKS+E+G+ I P+ Q Sbjct: 69 KIIKIQTFKKILKNLESPLHIHLGQVISKNEKMDFTIQKSIEIGVKTITPLFFENDHFQK 128 Query: 120 THY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGS 174 + R ISA QC+ +P I P + + N +++ +I+F Sbjct: 129 KRINFSNKIKRWEKIAISACRQCNRNIIPKIKIPMNVFHWCENNQNNDKKIIFHP----- 183 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +++L I + I+IG E G+ ++E + + F+ P+ LGPRILR++TA+V A+ Sbjct: 184 KSTLTMKCLTEPIKYIQIIIGSERGFFNDEFQKIIKYGFI-PIRLGPRILRTETASVVAI 242 Query: 235 ALVQAICGDW 244 +Q + GD+ Sbjct: 243 TALQTMFGDF 252 >gi|229552377|ref|ZP_04441102.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus LMS2-1] gi|258539747|ref|YP_003174246.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314243|gb|EEN80216.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus LMS2-1] gi|257151423|emb|CAR90395.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 242 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + L + + VLR G L + K + + + Sbjct: 1 MQRFFTEHLLHSQQTFTLEPAIAKHAIKVLRYDVGAVFELADPKHRVYQATVQTTDPLTV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +++ V+ + K ++ ++++QK+ E+G I ++ + Sbjct: 61 EIGPEITKNVELPIAVEVVCGVSKGDKTEWIVQKATELGAAKIGFFNAQWGTARWPAERI 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 MDR+ T +AAEQ +P + L + D ++V +E+ Sbjct: 121 AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGD--DAAVKLVAYEESAKKGEHAAL 178 Query: 181 LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A+ H ++ ++ GPEGG E L + F TP LGPRILR++TA + ++ V Sbjct: 179 VSALVPHPASLCVVFGPEGGISPAELALLQARGF-TPAGLGPRILRTETAPLYLLSAVSV 237 Query: 240 IC 241 + Sbjct: 238 LT 239 >gi|162149021|ref|YP_001603482.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter diazotrophicus PAl 5] gi|161787598|emb|CAP57194.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 250 Score = 212 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 7/237 (2%) Query: 8 KRLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 RLF D P+ + Q HYL VLR+ GD + LFN +DGEWL++I + + Sbjct: 5 PRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRR 64 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + ++ Q R+ + +F+P+K + D +++ E+G+ PV+T T Sbjct: 65 DRGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRV 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N R+ T AAEQC+ L +P I P L L W ++ A E + Sbjct: 125 NEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIE 184 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +A +LIGPEGG+ E L + PFV +SLG ILR+DTA ++L+ A Sbjct: 185 DVADGD--GLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239 >gi|329766974|ref|ZP_08258502.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341] gi|328837699|gb|EGF87324.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341] Length = 249 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64 +++ F++ L +++ + S D +++ ++R K D + + + +++ I V K Sbjct: 1 MQQYFLNEELNVESTYELSKDDSNHIVRIMRKKINDKVYVVFNNEIKYICNIIDNNVDKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + E S + + P+K ++++Y+IQK E+G+ I + Sbjct: 61 LITPYEQVDGSNELPTKITVAIPPLKNDKIEYLIQKLTELGVSNIILFNSERNIAKIKKD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSE-- 175 ++R AAEQ +P I +L+ L L + +++ ++V ++ +E Sbjct: 121 KVDSKLNRWNKIIKEAAEQSKRNIIPDITYVDSLKELILFSENYDYKVVAYEKESVNEDN 180 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N L++ + NV + G EGG +E L F + LG RILR++TA + + Sbjct: 181 VNFKRLLNSDLNNKNVIAVFGSEGGLSEQEIYNLLDDNF-EVIGLGKRILRAETAPLYFV 239 Query: 235 ALVQA 239 + V Sbjct: 240 SCVSY 244 >gi|332184390|gb|AEE26644.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf. novicida 3523] Length = 242 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 123/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F + + KT SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFCE--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNSDSLQYKTKIIAIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IK+ + +IQK+ E+G+ I P+IT +T + Sbjct: 65 LEVIDKKHINNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + ++ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-IQIPQNDLNLVLCPYTQTKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + + I IGPEGG+ E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KIKSSTNFN---IFIGPEGGFSDREMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 I Sbjct: 240 I 240 >gi|330998339|ref|ZP_08322163.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT 11841] gi|329568445|gb|EGG50250.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT 11841] Length = 254 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 20/246 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 R F + + + D+ + VLR++ GD I L +GK + ++I+ GK F Sbjct: 5 RFFYAPDVAVDDE--LPADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLF 62 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 KV E + + +P K +R++++ +K+ E+G + + RY++ + Sbjct: 63 KVLEAVPHPKEWSGHLHLALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEK---- 180 R+ +SA +Q P + + + + I + + Sbjct: 123 RIDKILVSAMKQSHKARKPLLNGMEDFKRFVDRPFAGQKFIAHCYDEADVAGVAKASEDK 182 Query: 181 ---------LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L + + +L+GPEG + E + F +SLG LR++TA + Sbjct: 183 AMDGGKPFLLDELDTGQDALVLVGPEGDFSINEVRLAQAHGF-RSVSLGRSRLRTETAGL 241 Query: 232 AAMALV 237 A+ L+ Sbjct: 242 VAVHLM 247 >gi|301066583|ref|YP_003788606.1| hypothetical protein LCAZH_1524 [Lactobacillus casei str. Zhang] gi|300438990|gb|ADK18756.1| conserved hypothetical protein [Lactobacillus casei str. Zhang] Length = 246 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F D L + + VLR GD L + +L+ I Sbjct: 1 MQRYFTDQKLKTGDVVQLDATIAKHAIKVLRQDIGDRFELVDPTHHAYLAIIQQSSPLQV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 E ++ V+ + K ++ ++++QK+ E+G I ++ + Sbjct: 61 AIDEDITKKVELPLAVEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERV 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R++ +AAEQ +P + L + ++V +E+ Sbjct: 121 VKKIARLQEIAKNAAEQSHRNQVPDVTMYAKLNQV--GQTAEAKLVAYEESAKQGEHGAL 178 Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A++ P ++ ++ GPEGG EE L F+ LGPRILR++TA + ++ V Sbjct: 179 ISALSPRPASLCVVFGPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETAPLYLLSAVSV 237 Query: 240 IC 241 + Sbjct: 238 LT 239 >gi|223938953|ref|ZP_03630839.1| protein of unknown function DUF558 [bacterium Ellin514] gi|223892380|gb|EEF58855.1| protein of unknown function DUF558 [bacterium Ellin514] Length = 251 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R ++ C + + + H+ VLR++EG+ +++ +G E L + K + Sbjct: 1 MHRFYLPPEECKENTLILTDREAHHALQVLRLREGEKLVVLDGAGQEILCEAQKAEKDQL 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + KV ++ + + K ++ +IQK+ E+G I P+++ + Sbjct: 61 KLKVLQRNFQPQLPYQITLFQAIPKGKIIETIIQKATELGAFRIVPLLSDRVVTQLDDEG 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +++ + I A +QC LP + P + + L + + + E Sbjct: 121 AASKVEKWKQTAIEAIKQCGSPWLPQVDAPVSPKDYLARGEKFELPLIGSLQNDCRHPRE 180 Query: 180 KLHAIAH-----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + V+I IGPEG + E + S V P++LG +LRS+TAA+ ++ Sbjct: 181 YFKTFHNERKRLPKTVSIWIGPEGDFTPAEMNLIKSAG-VLPITLGKLVLRSETAAIYSL 239 Query: 235 ALVQAIC 241 +++ Sbjct: 240 SVLNYEL 246 >gi|78188184|ref|YP_378522.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium chlorochromatii CaD3] gi|78170383|gb|ABB27479.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 247 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 17/242 (7%) Query: 10 LFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 + Q G+++H+L VLR +EG+ IL+ +G +I+ + K ++ Sbjct: 4 FYTPTEQIHPATNQVSIEGEEFHHLVRVLRKREGELILVTDGNGLRCEVRIASISKHDVQ 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ + + + V S +K R ++ ++K+ E+G+ I P++T T Sbjct: 64 GEIISTTTIEPPSTRVTVALSLLKNPQRFEWFLEKATELGISTIIPMVTARTVVQPSNDR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 H + R RT +SAA Q LP + P +L ++ + + + S Sbjct: 124 VHNKLKRWRTIVLSAARQSKRYYLPQVVEPQRFSDVLNRSGYDERCMPFEAATSS----P 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 LH N+ LIG EGG+ +EE + + +SLG ILR++TAA+ A+A V++ Sbjct: 180 TLHCA--GKNILFLIGGEGGFSAEEVQQAEATG-CRTMSLGTTILRAETAALFAVAYVRS 236 Query: 240 IC 241 Sbjct: 237 QL 238 >gi|303237747|ref|ZP_07324307.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN] gi|302482199|gb|EFL45234.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN] Length = 239 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 100/234 (42%), Gaps = 8/234 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F P T + ++ + VLR+K GD I L +G+ + ++++ + Sbjct: 5 RYFY-VPNAANTN-ELPTEEATHAVRVLRLKSGDEIYLMDGEGTFFQAEVTLASQKHCLY 62 Query: 69 VEYQSRSQT--KQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 ++ Q S + +P K R++++++K E+G I + ++++ D Sbjct: 63 NIKKAIPQEKTWNSKIHLAIAPTKDIGRIEWLVEKVTEVGFDEISFLNCKFSERKSLRSD 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAI 184 R+ +SA +Q P + + + K++ I + ++ + Sbjct: 123 RIERIVVSAMKQSRKPWKPIVNELINFDDFINKDFKGAKYICHCYNEIEKIDFFNSIN-L 181 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ +LIGPEG + EE + + ++LG LR++TA +AA+ + Sbjct: 182 QTTENITVLIGPEGDFSIEEVRKALANGY-QSVTLGNSRLRTETAGLAAVMMAN 234 >gi|227538374|ref|ZP_03968423.1| protein of hypothetical function DUF558 [Sphingobacterium spiritivorum ATCC 33300] gi|227241756|gb|EEI91771.1| protein of hypothetical function DUF558 [Sphingobacterium spiritivorum ATCC 33300] Length = 237 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 7/227 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67 + + ++ + VLR+ D + L +G+ G + ++I ++ Sbjct: 4 FYTPEIEPHFANFILTEEESKHAVRVLRLANRDQVHLIDGRGGFYRAEIIDAHPKRTALQ 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +E Q Q + +P K R ++ ++K+ E+G+ I PVI+ +++ DR Sbjct: 64 IIEIQEAFQKPSYHLHMAVAPTKNIERFEWFLEKATEVGVQEITPVISEHSERKEVKPDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185 + ++A +Q +P + P TL LK + + Q A + L ++ Sbjct: 124 LNKVIVAAMKQSYKAYMPKLNPAITLTNFLKQQEQVSAQKAIAHCVDSEKKYLGQV--FT 181 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + ILIGPEG + +EE S FV P+SLG LR++TAA+ Sbjct: 182 PQQDYVILIGPEGDFSTEEISKTISSGFV-PISLGEARLRTETAALT 227 >gi|170078905|ref|YP_001735543.1| hypothetical protein SYNPCC7002_A2310 [Synechococcus sp. PCC 7002] gi|169886574|gb|ACB00288.1| conserved hypothetical protein (DUF558) [Synechococcus sp. PCC 7002] Length = 236 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 13/240 (5%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++RL V ++ + +Q HYL VLR++ GD +++ NG WL +++ + Sbjct: 1 MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEE-- 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123 +E Q V+ + + K D +++ E+G+ I PVI+ T + + Sbjct: 59 IQLIESQHLQTECPIPVKLVAALPKNG-FDEVVRCCTELGVTQIYPVISERTILKPSENK 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 + R R AAEQ + +P I P LL+ + E SL L A Sbjct: 118 LKRWRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYLC----GAREKSLHLLDA 173 Query: 184 IAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + P + +LIGPEGG+ E + + + +SLG ILR+ TA++ A+ALV + C Sbjct: 174 LPKTLPPEITVLIGPEGGWTETEIQQAIAKG-MPVVSLGNSILRAVTASITAIALVNSHC 232 >gi|253681363|ref|ZP_04862160.1| conserved surface protein [Clostridium botulinum D str. 1873] gi|253561075|gb|EES90527.1| conserved surface protein [Clostridium botulinum D str. 1873] Length = 251 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 94/257 (36%), Gaps = 31/257 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + + F+ G+ ++ VLR+KEG+ + + N E+L I Y+ K + Sbjct: 1 MHKFFISEDKIFSDLSIIEGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKV 60 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117 K+ + + V K+ ++D + QK E+G+ I P++T Sbjct: 61 EVKLLKELEVNNEPPIEVYLFQGLPKSTKMDLITQKCTELGVKDITPIVTSRVSSSINDI 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +DR A +Q +P + IV E + Sbjct: 121 KRESKKLDRWNRIAFEACKQNKRTLIPVVNDIIDFHEFTDKLKDMDLIVVPYENAENYGI 180 Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEE----------KETLHSLPFVTPLSLGPRILRS 226 + + + +AI+I +L ++ ++LGPRILR+ Sbjct: 181 KQMTRGLKSEVKKIAIVI----------GPEGGFEEEEITSLKNMG-AHIVTLGPRILRT 229 Query: 227 DTAAVAAMALVQAICGD 243 +TA +AL+ GD Sbjct: 230 ETAGFTCLALLMYELGD 246 >gi|94989324|ref|YP_597425.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS9429] gi|94993212|ref|YP_601311.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS2096] gi|94542832|gb|ABF32881.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429] gi|94546720|gb|ABF36767.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096] Length = 249 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEILPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|300770808|ref|ZP_07080686.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762365|gb|EFK59183.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 237 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 7/227 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67 + + ++ + VLR+ D I L +G+ G + ++I ++ Sbjct: 4 FYTPEIESHFANFILTEEESKHAIRVLRLANRDQIHLIDGRGGFYRAEIIDAHPKRTTLQ 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +E Q Q + +P K R ++ ++K+ E+G+ I PVI+ +++ DR Sbjct: 64 IIEIQEAFQKPSYHLHMAVAPTKNIERFEWFLEKATEVGVQEITPVISEHSERKEVKPDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185 + ++A +Q +P + P TL LK + + Q A + L ++ Sbjct: 124 LNKVIVAAMKQSYKAYMPKLNPAMTLTNFLKQQEQVSAQKAIAHCVDSEKQYLSQV--FT 181 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + ILIGPEG + +EE S FV P+SLG LR++TAA+ Sbjct: 182 PQQDYVILIGPEGDFSTEEIGKTISSGFV-PISLGEARLRTETAALT 227 >gi|153953539|ref|YP_001394304.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium kluyveri DSM 555] gi|219854161|ref|YP_002471283.1| hypothetical protein CKR_0818 [Clostridium kluyveri NBRC 12016] gi|146346420|gb|EDK32956.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567885|dbj|BAH05869.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 251 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 37/260 (14%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + FV GD ++ VLR+K GD + + N E+L I + + Sbjct: 1 MNKFFVPQEDINFNTAHIKGDDLKHIHKVLRLKIGDKVNINNCHGKEFLGVIDSIEREKV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----N 119 VE V K++++D ++QK+ E+G+ I P+IT Sbjct: 61 TVNIVEELKLYNESPLKVYLFQGLPKSSKMDLVVQKATELGIWEITPIITNRVAIKGDFK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +DR + A +QC +P + PP E LLK + IV E S + Sbjct: 121 EFKRVDRWNKIALEACKQCKRSIIPAVKPPIYFEELLKYLSNMDLIVVPYEMEKSIGIKK 180 Query: 180 KLHAIA---HIPNVAILIGPEGGYHSEEKETLHSLPFV-------------TPLSLGPRI 223 + +I I ++AI+I ++LGPRI Sbjct: 181 VIDSIEYRDSIGDIAIVI--------------GPEGGFEEEEIEELKNISSKIVTLGPRI 226 Query: 224 LRSDTAAVAAMALVQAICGD 243 LR++TA AL+ GD Sbjct: 227 LRTETAGFVCTALLMYELGD 246 >gi|159030659|emb|CAO88329.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 233 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 9/235 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL +DF + +Q HYL V+R+K D + NG+ WL++I + Sbjct: 4 RLLLDFNTLENGLITLTPEQSHYLKKVVRLKSHDRFIALNGQGQAWLAEIIDNSAHL--- 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 +E + + V + + K D +++ + E+G+ I P++T + +DR Sbjct: 61 LEAINETSELPVQVNLMVAIPKNG-FDDIVRAATELGVYRIIPLLTERGLVNPSPQKIDR 119 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R A EQ + +P I P +LK L + Sbjct: 120 WRKIAREAVEQSERQIIPIIEEPQPFLAILKR--GANPQTTCYIGVTRRTVAPLLSQLQT 177 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + IGPEGG+ E E + FV P+SLG RILR+ TA + A+A++ A Sbjct: 178 STEITMAIGPEGGWTETEIEQAIAADFV-PVSLGKRILRTITAPLVALAIINAYL 231 >gi|332662267|ref|YP_004445055.1| ribosomal RNA small subunit methyltransferase E [Haliscomenobacter hydrossis DSM 1100] gi|332331081|gb|AEE48182.1| Ribosomal RNA small subunit methyltransferase E [Haliscomenobacter hydrossis DSM 1100] Length = 285 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 8/225 (3%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQ-SR 74 + + + ++ +L VLR G + + +GK + +++ +GK + R K+ Q + Sbjct: 60 IVGSLLELDEEETRHL-QVLRYTPGRILSVVDGKGNWYEAELLELGKKLARAKINTQKQQ 118 Query: 75 SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 +Q K + +P K RL++ ++K+ E+G+ I P++ R+++ T DR+ T+S Sbjct: 119 TQRKPYHLHVAIAPTKNIERLEWFLEKATEIGVDEITPILCRHSERTQVRQDRLEKITLS 178 Query: 134 AAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A +Q LP + P L+ L + + Q A T L++ + +V I Sbjct: 179 AMKQSLKTFLPRLNPLQPLKTFLPAQANFSGQKCIAWITDPPAALLQQTYQ--RGQSVMI 236 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEG + EE E F P+SLG LR++TA V A+ + Sbjct: 237 VIGPEGDFAPEEIELATQCNFA-PVSLGQSRLRTETAGVVAVHTI 280 >gi|241890108|ref|ZP_04777406.1| ribosomal RNA small subunit methyltransferase E [Gemella haemolysans ATCC 10379] gi|241863730|gb|EER68114.1| ribosomal RNA small subunit methyltransferase E [Gemella haemolysans ATCC 10379] Length = 249 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 13/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64 +++ F++ L +++ + S D +++ ++R K D + + + +++ I V K Sbjct: 1 MQQYFINEDLNVESTYELSKDDSNHIVRIMRKKIEDKVYVVFNNEIKYICTIVDNNVDKV 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + E + + + P+K ++++Y++QK E+G+ I + Sbjct: 61 LITPYEQVIGTNELSTKITVAIPPLKNDKIEYLMQKLTELGVSNIVLFNSERNIAKIKKD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGS 174 ++R AAEQ +P I +L+ L+ + V A E + Sbjct: 121 KVDSKLNRWNKIVKEAAEQSKRNVIPDITYVDSLKDLIVFSEKFDSKVVAYEKESVNEEN 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 N LH+ V + G EGG +E + L F + LG RILR++TA + + Sbjct: 181 INLKNLLHSDLSNKEVIAVFGSEGGLSEQEVDFLTENKF-DVIGLGKRILRAETAPLYFV 239 Query: 235 ALVQA 239 + V Sbjct: 240 SCVAY 244 >gi|284036271|ref|YP_003386201.1| hypothetical protein Slin_1352 [Spirosoma linguale DSM 74] gi|283815564|gb|ADB37402.1| protein of unknown function DUF558 [Spirosoma linguale DSM 74] Length = 239 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 100/233 (42%), Gaps = 5/233 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 + + + + D + LR++ GD I + +G ++ + I + F+ Sbjct: 4 FYQPEIIAGEATQHLTEDDSRHAIKTLRLRAGDAITVTDGHGNQYAAVIHETDLRQCAFR 63 Query: 69 VEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 ++ + + V+ +P K +R+++ ++K+VE+G+ I ++++ ++R+ Sbjct: 64 IKAVQTTPPRPFSVRICVAPTKNLDRIEWFVEKAVEVGIERISFFFGQHSERRVLKLERI 123 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I+A +Q LP + + +LK + + ++ + Sbjct: 124 EKIAIAAMKQSLQSFLPKLDDAVSFGEMLKTIGDEQRFIAH--LPANQPLVNLAKQATEA 181 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +LIGPEG + E + + F +LGP LR++TAA+ A ++ I Sbjct: 182 GQYVVLIGPEGDFSDTEIQQALAAGFQVA-TLGPNRLRTETAALTACQILNFI 233 >gi|209545229|ref|YP_002277458.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter diazotrophicus PAl 5] gi|209532906|gb|ACI52843.1| protein of unknown function DUF558 [Gluconacetobacter diazotrophicus PAl 5] Length = 250 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 7/237 (2%) Query: 8 KRLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 RLF D P+ + Q HYL VLR+ GD + LFN +DGEWL++I + + Sbjct: 5 PRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRR 64 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + ++ Q R+ + +F+P+K + D +++ E+G+ PV+T T Sbjct: 65 DRGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRV 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N R+ T AAEQC+ L +P I P L L W ++ A E + Sbjct: 125 NEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIE 184 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +A +L+GPEGG+ E L + PFV +SLG ILR+DTA ++L+ A Sbjct: 185 DVADGD--GLLVGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239 >gi|258508566|ref|YP_003171317.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148493|emb|CAR87466.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|259649873|dbj|BAI42035.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 242 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + L + + VLR G L + K + +K+ Sbjct: 1 MQRFFTEHLLHSQQTVTLEPAIAKHAIKVLRYDVGAVFELADPKHRVYQAKVQTTDPLTV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +++ V+ + K ++ ++++QK+ E+G I ++ + Sbjct: 61 EIGPEITKNVELPIAVEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERI 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 MDR+ T +AAEQ +P + L + D ++V +E+ Sbjct: 121 AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGD--DAAVKLVAYEESAKKGEHAAL 178 Query: 181 LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A+ H ++ ++ GPEGG E L + F TP LGPRILR++TA + ++ V Sbjct: 179 VSALVPHPASLCVVFGPEGGISPAELALLQARGF-TPAGLGPRILRTETAPLYLLSAVSV 237 Query: 240 IC 241 + Sbjct: 238 LT 239 >gi|88607769|ref|YP_505371.1| hypothetical protein APH_0794 [Anaplasma phagocytophilum HZ] gi|88598832|gb|ABD44302.1| conserved hypothetical protein TIGR00046 [Anaplasma phagocytophilum HZ] Length = 239 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 9/230 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 + D L + DQ HY+ V+R++ D ++LF+G G+W + IS + K + + Sbjct: 13 YYSDSALNKGEKVLLRSDQAHYIRDVMRVRISDAVVLFDGVTGDWFATISEISRKKVEVR 72 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 VE+ K D+ + +K + + +++++ EMG+ I+P+ T Y+ + N+ + R Sbjct: 73 VEHLVSEYVKSRDLMLCIALVKQDTMRSVVRQATEMGVTQIQPIRTEYSVVSDINVQKCR 132 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + I AAEQC+ +P I L D ++V DET E L + Sbjct: 133 QWAIEAAEQCERQDIPEIASVMEFTHL---NDLGKKLVLCDETGKGRMPAEVLRS---KE 186 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ I+IGPEGG+ E S F +SLG RILR DTA VAA+A V Sbjct: 187 NLGIIIGPEGGFSERELVCAES--FCEKMSLGHRILRVDTAVVAALAYVN 234 >gi|239631385|ref|ZP_04674416.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525850|gb|EEQ64851.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 246 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F D L + + VLR GD L + +L+ I Sbjct: 1 MQRYFTDQKLKTGDVVQLDATIAKHAIKVLRQDIGDRFELVDPTHHAYLAIIQQSSPLQV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 E ++ V+ + K ++ ++++QK+ E+G I ++ + Sbjct: 61 AIDEDITKKVELPLAVEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERV 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R++ +AAEQ +P + L + ++V +E+ Sbjct: 121 VKKIARLQEIAKNAAEQSHRNQVPDVTMYAKLNQV--GQTAEAKLVAYEESAKQGEHGVL 178 Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A++ P ++ + GPEGG EE L F+ LGPRILR++TA + ++ V Sbjct: 179 ISALSPRPASLCVFFGPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETAPLYLLSAVSV 237 Query: 240 IC 241 + Sbjct: 238 LT 239 >gi|319717302|ref|YP_001649575.3| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii str. Iowa] gi|165907873|gb|ABY72169.1| hypothetical protein RrIowa_0258 [Rickettsia rickettsii str. Iowa] Length = 257 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 12/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 14 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 69 Query: 60 YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 +GK S+R K Q + +S + + IK ++L I + ++G+ I P+ITR+ Sbjct: 70 DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 127 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 128 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 185 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ ++ ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 186 SILRISSLLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234 >gi|253580713|ref|ZP_04857977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848084|gb|EES76050.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 248 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 108/256 (42%), Gaps = 32/256 (12%) Query: 7 LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R FV+ K + +G +++ +VLRMK G+++ + +G D E+ +I +G+ Sbjct: 1 MQRFFVEPYQIEKEAHRIHINGTDVNHIKNVLRMKCGEDVWISDGGDKEYHCQIEELGED 60 Query: 65 IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 Q + + K ++++ +IQK+VE+G +I PV T+ Sbjct: 61 EVLLHILYAQEPEYELPNKIYLFQGLPKADKMELIIQKAVELGAFSIIPVETKRCVVKLD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175 + + R + SAA+Q + +P I+ T + L+ + +++ + G + Sbjct: 121 VKKAAKKVVRWQQIAESAAKQSKRMLIPEIHEVMTYKQALEFAKQLDVKLIPYELAKGMK 180 Query: 176 NSLEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + E L I +V I I ++LG RILR Sbjct: 181 ETREILSEIKPGQSVGIFIGPEGGFEEEE----------VAKALEAG-AHAITLGRRILR 229 Query: 226 SDTAAVAAMALVQAIC 241 ++TA +A ++++ Sbjct: 230 TETAGLAILSVLMFQL 245 >gi|163847399|ref|YP_001635443.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aurantiacus J-10-fl] gi|222525248|ref|YP_002569719.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus sp. Y-400-fl] gi|163668688|gb|ABY35054.1| protein of unknown function DUF558 [Chloroflexus aurantiacus J-10-fl] gi|222449127|gb|ACM53393.1| protein of unknown function DUF558 [Chloroflexus sp. Y-400-fl] Length = 252 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 9/241 (3%) Query: 8 KRLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +R FV+ Q + H VLR++ GD ++L +G+ + +I+++ + Sbjct: 12 RRFFVNPGWLRTDQVEIDDAAIIHQWERVLRLRAGDRVMLLDGQGLAAIVEITHIDRRRA 71 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 V S + I+ R ++ IQK+VE+G+ I PV + + Sbjct: 72 RGQVVARCQASGEPAVTFDLYLALIRPERFEWAIQKAVELGVYRIVPVTFARSLITGRID 131 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + R + AAEQ LP + P + L + DE + + Sbjct: 132 EHRLARWQRIATEAAEQAGRGRLPVVAEPQSFAAALTRAHTADLAILLDE-QATVHLRTV 190 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + +AI GPEGG E+ H + +SLGPRILR++TA + A+A++Q Sbjct: 191 LPPQPSLRQIAIYSGPEGGIDPAERTAAHQHG-IQSVSLGPRILRAETAPLVALAMLQYA 249 Query: 241 C 241 Sbjct: 250 L 250 >gi|299142603|ref|ZP_07035734.1| RNA methyltransferase, RsmE family [Prevotella oris C735] gi|298576038|gb|EFI47913.1| RNA methyltransferase, RsmE family [Prevotella oris C735] Length = 240 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 103/233 (44%), Gaps = 8/233 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 +V + ++ + VLR++ GD++ L +G+ + +++S K + Sbjct: 7 FYVPDAASTN---ELPAEEATHALRVLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYT 63 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E + +T + + +P K +R++++ +K+ E+G + + +++ DR Sbjct: 64 IKENLPQQKTWRGHIHLAIAPTKNIDRMEWLAEKATEIGFDELSFLHCAFSERKVLRADR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185 + +SA +Q +P + + + + + I E ++ ++ Sbjct: 124 IEKIVVSAVKQSRKPWMPQVNALESFKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDDQ 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +L+GPEG + +E + + + +SLG LR++TA + A+ + Q Sbjct: 184 KNEQITVLVGPEGDFSIDEVRLAMAQGYES-ISLGESRLRTETAGLMAVTMAQ 235 >gi|94991269|ref|YP_599369.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS10270] gi|94544777|gb|ABF34825.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270] Length = 249 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTVT-DKDTIKHMFQVMRLTDEAEVILVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LKN I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEQKAEFLKNLPSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|193211908|ref|YP_001997861.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobaculum parvum NCIB 8327] gi|193085385|gb|ACF10661.1| protein of unknown function DUF558 [Chlorobaculum parvum NCIB 8327] Length = 247 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%) Query: 10 LFV-DFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 +V L + + G+++H+LA VLR +EGD + + +G + +GKS ++ Sbjct: 4 FYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQ 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + R ++ V S +K R D+ ++K+ E+G+ I P+IT+ T + Sbjct: 64 GSIRNPRRVPPPETRVSVAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKK 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R R SAA Q LP + P + + L+ ++ +++ A E+ + E Sbjct: 124 IDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLI-AHESEEAFGPFE 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V IGPEGG+ E V P+S G +LR++TA V A+ALV+A Sbjct: 183 -----PAGQCVLFFIGPEGGFSEAEIAAAAQSG-VRPVSFGASVLRAETAGVFAVALVRA 236 Query: 240 IC 241 Sbjct: 237 AL 238 >gi|251781649|ref|YP_002995951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390278|dbj|BAH80737.1| hypothetical protein SDEG_0220 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 252 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGIKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 ISYAL 243 >gi|116495024|ref|YP_806758.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334] gi|191638529|ref|YP_001987695.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus casei BL23] gi|227534966|ref|ZP_03965015.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105174|gb|ABJ70316.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334] gi|190712831|emb|CAQ66837.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus casei BL23] gi|227187423|gb|EEI67490.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327382565|gb|AEA54041.1| hypothetical protein LC2W_1708 [Lactobacillus casei LC2W] gi|327385762|gb|AEA57236.1| hypothetical protein LCBD_1740 [Lactobacillus casei BD-II] Length = 246 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F D L + + VLR GD L + +L+ I Sbjct: 1 MQRYFTDQKLKTGDVVQLDATIAKHAIKVLRQDIGDRFELVDPMHHAYLAIIQQSSPLQV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 E ++ V+ + K ++ ++++QK+ E+G I ++ + Sbjct: 61 AIDEDITKKVELPLAVEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERV 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R++ +AAEQ +P + L + ++V +E+ Sbjct: 121 VKKIARLQEIAKNAAEQSHRNQVPDVTMYAKLNQV--GQTAEAKLVAYEESAKQGEHGAL 178 Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A++ P ++ ++ GPEGG EE L F+ LGPRILR++TA + ++ V Sbjct: 179 ISALSPRPASLCVVFGPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETAPLYLLSAVSV 237 Query: 240 IC 241 + Sbjct: 238 LT 239 >gi|118581365|ref|YP_902615.1| 16S ribosomal RNA methyltransferase RsmE [Pelobacter propionicus DSM 2379] gi|118504075|gb|ABL00558.1| protein of unknown function DUF558 [Pelobacter propionicus DSM 2379] Length = 248 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 12/245 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R + GD + ++ VLR+ G ++ L + + E I V K Sbjct: 4 RRFMISSRSIQDNHAWLEGDLFSHMVRVLRLGPGASVTLVDEQGAEHRGSIQQVEKERVM 63 Query: 68 KVEYQS----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYT 117 S + + + + K + D ++QK E+G+ R V Sbjct: 64 VRIAGSVVPGNGEGETPAITICQALPKGEKTDLILQKGTELGVHDFRLFAGCRSVARVRE 123 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + ++R T AA QC +P + E + DH +++ E + Sbjct: 124 EQHKGKLERWNRITAEAARQCGRRRIPAVSWFPDAERAAGSCDHELRLLLW-EGERRQGL 182 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + + IGPEGG+ E F+ P+SLG R+LR++TA++A A++ Sbjct: 183 KNALEQLPRPASAIVAIGPEGGFDPREVRCFIGHGFL-PVSLGKRVLRTETASLAITAIL 241 Query: 238 QAICG 242 Q I G Sbjct: 242 QYIWG 246 >gi|256847109|ref|ZP_05552555.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715773|gb|EEU30748.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 248 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 12/246 (4%) Query: 7 LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R F+ I + H+ VLR + G L + + + + + Sbjct: 1 MQRYFIHQAQPHINEKLSLPSSVAHHFITVLRAEPGTQCELVFDNEHVYRASLIDSKIAQ 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E ++ K + + ++QK+ E+G + + Sbjct: 61 VEVLEDLQQNAELPVHPILACGLPKTKGKPELIVQKATELGADEVIFFEAARSVSHWATN 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 + R++ AAEQ LP I L +L+ ++V +E+ + Sbjct: 121 KQTKKIARLQKIANGAAEQSHRNRLPQISYLPDLATVLQQTSAEQKVVAWEESAKQGETS 180 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + + GPEGG +E + + V P+ LGPRILR++TA + ++ Sbjct: 181 ALATVLQQTKSDDRMLAIFGPEGGLTEDEITQMQAAG-VVPVGLGPRILRTETAPLYLLS 239 Query: 236 LVQAIC 241 + Sbjct: 240 AISFAT 245 >gi|56808290|ref|ZP_00366055.1| COG1385: Uncharacterized protein conserved in bacteria [Streptococcus pyogenes M49 591] gi|209560117|ref|YP_002286589.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes NZ131] gi|209541318|gb|ACI61894.1| hypothetical protein Spy49_1637c [Streptococcus pyogenes NZ131] Length = 249 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTVT-DKDTIKHMFQVMRLTDEAEVILVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LKN I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKNLPSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|325280830|ref|YP_004253372.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter splanchnicus DSM 20712] gi|324312639|gb|ADY33192.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter splanchnicus DSM 20712] Length = 234 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EY 71 P + D+ + VLR+ G+ + L +GK + I + ++ + Sbjct: 6 TPDIEGDIYTLNADESRHCVRVLRLGAGEAVSLVDGKGTWYEGVIERAEVRGCEIRITDR 65 Query: 72 QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY 130 + + + +P K +R+++M++K EMG+ I + +++ +R+ Sbjct: 66 RELYGRRNFHLHLAVAPTKNIDRIEWMLEKCTEMGIDEITLLHAAHSERKVVKEERLEKV 125 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 ++A +Q LP + P T L+ + + + A G + L++++ +V Sbjct: 126 IVAAMKQSLKAYLPRLNPMTDFRQLVTSCREPHKFI-AHCNEGDKKRLDEVY--RPGEDV 182 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 ILIGPEG + EE FV P++LG LR++TA + A Sbjct: 183 VILIGPEGDFSEEEVVLARHHGFV-PVTLGTSRLRTETAGIVAC 225 >gi|91790687|ref|YP_551639.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas sp. JS666] gi|91699912|gb|ABE46741.1| protein of unknown function DUF558 [Polaromonas sp. JS666] Length = 260 Score = 210 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 26/249 (10%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-------WLSKISYV 61 R D L + + VLR++ GD+I LFNG + + I ++ Sbjct: 4 RFHADLALVPGSSVSLPDQTARH-VQVLRLQPGDHITLFNGAGEGGGIGEGEFDATIEHM 62 Query: 62 GKS-IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117 G+S +R V + ++ + V R+D++I+K+ E+G +I+P+++ + Sbjct: 63 GRSDVRAMVGAYTATRRETDRAVHLALGMPANERMDWLIEKATELGAASIQPLMSERSVL 122 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + + R ++A EQC LP I L LK V D Sbjct: 123 RIKGERADKKLAHWRGVAVAACEQCGRNRLPAIREVMGLGDWLKAQAGQTAGVTQDSAEA 182 Query: 174 ---------SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 + A+A+ + L GPEGG E+ + FV P++LGPR+L Sbjct: 183 VGTRLLLSLQAGTRPLAQAVANTGALTFLSGPEGGLSPAEEAAAIACGFV-PVTLGPRVL 241 Query: 225 RSDTAAVAA 233 R++TA +A Sbjct: 242 RAETAPLAC 250 >gi|313205520|ref|YP_004044697.1| hypothetical protein Riean_0009 [Riemerella anatipestifer DSM 15868] gi|312444836|gb|ADQ81191.1| protein of unknown function DUF558 [Riemerella anatipestifer DSM 15868] gi|315023392|gb|EFT36402.1| Ribosomal RNA small subunit methyltransferase E [Riemerella anatipestifer RA-YM] gi|325335048|gb|ADZ11322.1| Ribosomal RNA small subunit methyltransferase E [Riemerella anatipestifer RA-GD] Length = 231 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 7/225 (3%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRS 75 + + D+ H+++ VLRMKEG+ + + +GK + GK + + E Q+++ Sbjct: 8 ILNDKVIIDSDEQHHISKVLRMKEGEMLYVTDGKGNVAKGNLILEGKKVELNILEIQTKT 67 Query: 76 QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + +P K +R ++ ++K+ EMG+ I ++T ++ H N+D+++ I+A Sbjct: 68 PPFSPYLHIAIAPTKNIDRTEFFVEKATEMGISEISFLLTEKSERKHLNIDKIQKKIIAA 127 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 ++Q P + ++ V + SL ++ + V LI Sbjct: 128 SKQSLRYHFPKVNDLQKFTSFMQTQTAENTFVAHCDKAFKRVSLSEIPLV---DKVCFLI 184 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 GPEG + E E L V +SLG + LR++TA V +A Sbjct: 185 GPEGDFSLSEIELLLEKG-VQAISLGNQRLRTETAGVF-VAAWNY 227 >gi|313884114|ref|ZP_07817880.1| RNA methyltransferase, RsmE family [Eremococcus coleocola ACS-139-V-Col8] gi|312620561|gb|EFR31984.1| RNA methyltransferase, RsmE family [Eremococcus coleocola ACS-139-V-Col8] Length = 263 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 20/254 (7%) Query: 7 LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 +++ FVD L + GD +H+L V+R K G I + + + I + K + Sbjct: 1 MQQYFVDQATLTLGQVFTIEGDDFHHLVKVMRAKPGQVIQVVAANQVAYAASIQTIDKAT 60 Query: 65 IRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITR 115 + +V+ + DV K ++LD++ QK E GM ++P V Sbjct: 61 CQLQVDQILQDNCLIELPLDVTLACGISKNDKLDWIAQKGTEGGMACLQPLNLKRDVAKW 120 Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 ++R+ AA+Q +P + L ++ + + A E Sbjct: 121 QANKAAKRIERLEKIVKEAAQQSHRRQIPQVNDCLNLIDFIRQVPNQAIKLIAFEETAKV 180 Query: 176 NSLEKLHAIAH--------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + L +P + ++ G EGG E E L + F SLGPRILR++ Sbjct: 181 GHHQVLAKTLSQLDLNQEVLPPLVMVFGSEGGLDIGEVEQLQAAGF-KACSLGPRILRAE 239 Query: 228 TAAVAAMALVQAIC 241 TA + A+ + Sbjct: 240 TAPIFALGAISYAL 253 >gi|167627639|ref|YP_001678139.1| 16S ribosomal RNA methyltransferase RsmE [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597640|gb|ABZ87638.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 241 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 15/240 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVG-KSIRF 67 F D T+ +G+ Y+Y +VLR+K+ D I LFN DG + ++I + K+I Sbjct: 7 FFADIS-TQTTKLSITGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKAQIIDINNKNILL 65 Query: 68 KVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 +V + + V + IK +++IQK+ E+G+ I P+IT YT Sbjct: 66 EVIEKKEIHNENKYIVNIYQAIIKNENFEFIIQKATELGVNNIYPIITEYTNHKFDKKGF 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R I+AAEQC + +P I+ P + + D I + EN Sbjct: 126 DKKLERWNKIAIAAAEQCGRVFIPKIHNPIEINS-IHLSDSYMNIALCPYSNTPENFENL 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + I IGPEGG+ ++E E + F T ++LG RIL+++TA V+ +A++ + Sbjct: 185 IKTHDKFN---IFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPVSILAIINFV 240 >gi|157828086|ref|YP_001494328.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800567|gb|ABV75820.1| hypothetical protein A1G_01190 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 244 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 12/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56 Query: 60 YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 +GK S+R K Q + +S + + IK ++L I + ++G+ I P+ITR+ Sbjct: 57 DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ ++ ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 173 SILRISSLLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|260911769|ref|ZP_05918341.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260634095|gb|EEX52213.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 240 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 8/236 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-- 67 +V C + ++ + + VLR++ GD + L +G + ++++ V KS Sbjct: 7 FYVPNAECSN---ELPAEEAAHASRVLRLESGDEVFLIDGAGCFFKAQLTLVTKSRCLYD 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 VE + +T + +P K +R+++ ++K+ E+G+ + +++ + ++R Sbjct: 64 IVERLPQEKTWHGRIAIAMAPTKVIDRVEWTLEKATEIGVDEFSLLNCAFSERRNVKLER 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185 + ++A +Q P + + E +K + I ++ +L + Sbjct: 124 LDKIVVAAVKQSRKAWKPLLNDIQSFEHFVKQPRKGVKYIAHCYAEIDKKDLYNELTQLN 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 V ILIGPEG + EE S +V+ +SLG LR++TAA+AA + Q Sbjct: 184 CDEEVTILIGPEGDFSIEEVRLAMSQGYVS-VSLGQSRLRTETAALAATMIAQLAF 238 >gi|39995554|ref|NP_951505.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sulfurreducens PCA] gi|39982317|gb|AAR33778.1| conserved hypothetical protein TIGR00046 [Geobacter sulfurreducens PCA] gi|298504560|gb|ADI83283.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter sulfurreducens KN400] Length = 260 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 11/246 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R V GD + ++A LR+K ++L +GK+ E I+ +G+ Sbjct: 1 MRRFIVTGLDLSGKNVVVRGDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRDSL 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + Q R + K ++++ ++QKS E+G+ + P + + Sbjct: 61 TVTISERRQIRGDGDGLWLTLCQGLPKGDKMELILQKSTELGVSEVVPFLAERSVPRISP 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R + AA Q +P + L ++ DH+ +++ E + Sbjct: 121 EREQERLRRWQRVAEEAARQAGCPAVPRVQLARGLTEAVRGTDHDLKLLLW-EDERTTTL 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A +A+++GPEGG+ + E FV P++LG RILR++TA +A +A++ Sbjct: 180 AGVLAAAQTPKRIAVVVGPEGGFTAAEAAEAREAGFV-PVTLGRRILRTETAGIALVAIL 238 Query: 238 QAICGD 243 Q + GD Sbjct: 239 QYLYGD 244 >gi|317495255|ref|ZP_07953625.1| RNA methyltransferase [Gemella moribillum M424] gi|316914677|gb|EFV36153.1| RNA methyltransferase [Gemella moribillum M424] Length = 249 Score = 210 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 17/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ I + S D +++ ++R K D I + + +++ I + +I Sbjct: 1 MQQYFVNDKFDINSTYNLSKDDSNHIVRIMRKKINDKIYVVFNDEIKYICSI--INDNIE 58 Query: 67 FKV----EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + E S + P+K ++ +Y+IQK E+G+ +I + Sbjct: 59 SVIVKPYEEVRGSNELPIKITIAIPPLKNDKTEYLIQKLTELGVSSIVLFNSERNIAKIK 118 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175 ++R + AAEQ +P I E L++ + ++V ++ +E Sbjct: 119 KDKVESKLNRWQKIIKEAAEQSKRNLIPDITYIDCFEKLIEYSKSLDYKMVAYEKESINE 178 Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N + L+ +V + G EGG +E TL S F +SLG RILR++TA + Sbjct: 179 DNYNLKKLLNGPLENKSVIAVFGSEGGLSEKEINTLTSSEF-DVISLGKRILRAETAPLY 237 Query: 233 AMALVQA 239 + V Sbjct: 238 FTSCVSY 244 >gi|254369089|ref|ZP_04985101.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122039|gb|EDO66179.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 242 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 15/240 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRF 67 F D L T SG+ Y+Y +VLR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSDI-LTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITL 65 Query: 68 KVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120 +V + + + + + IK+ + +IQK+ ++G+ I P+IT +T + Sbjct: 66 EVIDKKHISNENNYITNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGF 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++K Sbjct: 126 DKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQK 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + + I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ + Sbjct: 185 VKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFL 240 >gi|194335493|ref|YP_002017287.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme BU-1] gi|194307970|gb|ACF42670.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme BU-1] Length = 247 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 15/229 (6%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79 GD++H+L VLR K G+ IL+ +G + I+ +GK S + SR Sbjct: 17 NLVVDGDEFHHLVRVLRKKTGEKILVTDGNGLRCEASIAEIGKTSFTADILACSRIDRPN 76 Query: 80 SDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 ++V S +K R + ++K+ E+G+ I P++T T + ++R RT + Sbjct: 77 TEVTVALSLLKAPQRFELFLEKATELGVSTIIPMLTARTLSHPSNEKVQGKLNRWRTIML 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 SAA Q LP + P T + ++ +++ + + + Sbjct: 137 SAARQSKRHYLPQLTEPLTFKKAAALQGYDLKLIPYELSEAPPKVK------CSGKKILF 190 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 LIG EGG+ + E E + F LS G ILR++TA + A+ALV+ Sbjct: 191 LIGGEGGFTANEIEEARAAGFNE-LSFGKTILRAETAGIFAVALVRTQL 238 >gi|313896749|ref|ZP_07830297.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974666|gb|EFR40133.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137 str. F0430] Length = 248 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGKSI 65 ++RLF L + + +G H+LA V+R + G + + G ++ V + Sbjct: 1 MRRLFYPGELTP--EIRITGGDAHHLARVMRAQLG-AVHVVAGTDGRAARMTVTAVARDA 57 Query: 66 RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--- 120 Y +++V + + +K + D+++QK+VE+G A+ P++T + Sbjct: 58 VTLRLDSYVEDDAPARAEVILVQALLKGEKTDFVVQKAVELGAAALHPIVTEHVVVRYDA 117 Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCG 173 R + AA+QC L L + P +++ +L + + + ++F E Sbjct: 118 KKAAAKTARWQKIADEAAKQCGRLLLMHVAPVGSIDSILGDAEIFGGVDTTVIFCYEGER 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++ L + V +++G EGG+ E L + P+SLG ILR++TAA+AA Sbjct: 178 MQSMRAVLRTVTSA-RVVLIVGAEGGFSPAEAARLTAAG-AQPVSLGHLILRAETAAIAA 235 Query: 234 MALVQAICG 242 + +VQ G Sbjct: 236 LTVVQYELG 244 >gi|218282362|ref|ZP_03488644.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989] gi|218216648|gb|EEC90186.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989] Length = 239 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 14/240 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +K++++D L I + Q H++ VLR + I + G +L + Sbjct: 1 MKQVYLDAVLSIHDVIELDTKQAHHIFDVLRTTPKEKIRIITKNSGVFLGHVE---NKPI 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + + IK ++ ++M+QK+ E+G+ I P +++ T + Sbjct: 58 LIIDSIVDVFEENQSITLCCALIKQDKFEWMLQKACELGVTKIVPFVSKNTVVKLDEKKA 117 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-ETCGSENSLE 179 R ++A +QC+ TL + P L+ L N+ C +V + E+ S++ Sbjct: 118 EKKQSRWNEILLAATKQCNRNTLVELEPVIPLKK-LSNYKSECNLVAYEKESDPSKHMAH 176 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + ++ + IGPEGG+ E + L+ + SLG ILR++TAA ++ ++ Sbjct: 177 YLKE--NPKSITVCIGPEGGFEESEIQVLNEFGYEN-CSLGNNILRAETAACYVLSAIEY 233 >gi|148657147|ref|YP_001277352.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus sp. RS-1] gi|148569257|gb|ABQ91402.1| protein of unknown function DUF558 [Roseiflexus sp. RS-1] Length = 260 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 11/249 (4%) Query: 3 IHSHLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 I S+ R FVD + + + H LA VLR+ GD I+L +G+ ++ + V Sbjct: 9 IRSNTYRFFVDPSALDGGKARLFDPELGHQLADVLRLGRGDRIILLDGEGWQYTVSLEAV 68 Query: 62 GKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 + ++R + ++ I+T R ++ +QK VE+G P + Sbjct: 69 DRRGTVNGAIEAREAAGGEPRINLTIYLPLIRTERFEWALQKGVELGAATFVPTTCARSI 128 Query: 119 N---THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---TC 172 + + R R AAEQ LP + P WD + + E Sbjct: 129 DIAPDERKLTRWRRIIREAAEQSRRGRLPRLTPAIPFAEACAQWDSSDPALLLWEGTDAT 188 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ++L L ++A+ GPEGG +E++ + +SLGPR LR++TA +A Sbjct: 189 PLAHALRILQQHTSPTSLALFSGPEGGLTDDERQCAGRHG-IMSVSLGPRTLRAETAPIA 247 Query: 233 AMALVQAIC 241 A A++ Sbjct: 248 ATAIIVYEF 256 >gi|301794754|emb|CBW37207.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] Length = 247 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 97/244 (39%), Gaps = 12/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ + Sbjct: 1 MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVQELNDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF----ADETCGSEN 176 ++++ + AAEQ +P I+ L D +I+ A + + Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + + + + GPEGG E E + V LGPRILR++TA + A++ Sbjct: 180 LIKAVTGLEKGAKLLFIFGPEGGLSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSA 238 Query: 237 VQAI 240 + + Sbjct: 239 LSVL 242 >gi|307153004|ref|YP_003888388.1| hypothetical protein Cyan7822_3159 [Cyanothece sp. PCC 7822] gi|306983232|gb|ADN15113.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7822] Length = 239 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 8/236 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + RL ++ + + DQ HYL VLR+K+GD +++ NG+ W + + + Sbjct: 1 MYRLVIEPTQQQQEWVNLTHDQQHYLKRVLRLKDGDPLIIMNGQGKAWKAILQGTSAQL- 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124 +E + S ++ + + K + + +++ E+G+ PVI+ T + + Sbjct: 60 --LETLTESTELALNLSLLIALPKGSGFEEIVRGCTELGVTTFIPVISERTLLNPSAQKI 117 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHA 183 +R R + AAEQ + +P I P L +++ L Sbjct: 118 ERWRKIALEAAEQSERQIVPQILEPIKFSIALTKVKEVKTDKYICVTRRETDHLFSYLTK 177 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 P + I GPEGG+ + E + S F P+SLGPRILR+ TA V +LV A Sbjct: 178 PLLNPQI-IATGPEGGWTTGEIDLAISAGF-QPVSLGPRILRAITAPVYVASLVSA 231 >gi|30022390|ref|NP_834021.1| surface protein [Bacillus cereus ATCC 14579] gi|29897948|gb|AAP11222.1| surface protein [Bacillus cereus ATCC 14579] Length = 245 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 14/227 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ +T + GD H++A V+RM GD+I + I + Sbjct: 1 MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDTCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 N + L + + I+ GPEGG EE L FV P SLGP Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGP 225 >gi|167769487|ref|ZP_02441540.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM 17241] gi|167668455|gb|EDS12585.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM 17241] Length = 241 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 13/233 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F +G+ ++A LRMK G+ + + +G ++ +I + Sbjct: 1 MPRFFCGQ--VCGDTAVVTGEDARHMALSLRMKIGEAVTVCDGAGRDYQCRIETIAPEQV 58 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 QS + ++ + K ++ + ++QK+VE+G I PV+T + Sbjct: 59 LLRVGQSAVSAGEPRVEITLYQAMPKGDKFESIVQKAVELGAARIVPVLTHRCVSRPDEK 118 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + AA+QC +P + P ++ + E + L Sbjct: 119 AMRKKLERYNRIALEAAKQCGRGRIPQVEPMLHFSQAVERMKCEPLAILFYENA--DQPL 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + +++++G EGG+ E + LSLG RILR +TA V Sbjct: 177 HQALRSGVGGRISLMVGSEGGFEPSEAGFAVENG-LMALSLGSRILRCETAPV 228 >gi|320529958|ref|ZP_08031034.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399] gi|320137755|gb|EFW29661.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399] Length = 248 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGKSI 65 ++RLF L + + +G H+LA V+R + GD + + G ++ V + Sbjct: 1 MRRLFYPGELTP--EIRITGGDAHHLARVMRAQLGD-VHVVAGADGRAARMTVTAVARDA 57 Query: 66 RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--- 120 Y +++V + + +K + D+++QK+VE+G A+ P++T + Sbjct: 58 VTLRLDSYVEDDAPARAEVILVQALLKGEKTDFIVQKAVELGAAALHPIVTEHVVVRYDA 117 Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCG 173 R + AA+QC L+L + P ++ +L + + + ++F E Sbjct: 118 KKAAAKTARWQKIADEAAKQCGRLSLMHVAPVGAIDSILGDVEIFGGVDTTVIFCYEGER 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++ L + V +++G EGG+ E L + P+SLG ILR++TAA+AA Sbjct: 178 MQSMRAVLRTVMSA-RVVLIVGAEGGFSPTEAARLTAAG-AQPVSLGHLILRAETAAIAA 235 Query: 234 MALVQAICG 242 + +VQ G Sbjct: 236 LTVVQYELG 244 >gi|226938941|ref|YP_002794012.1| hypothetical protein LHK_00007 [Laribacter hongkongensis HLHK9] gi|226713865|gb|ACO73003.1| Methyltrans_RNA domain containing protein [Laribacter hongkongensis HLHK9] Length = 240 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R VD PL + D +L VLR++ D ++LF+GK GEW +++ +G+ S Sbjct: 1 MPRFLVDSLPLATG-ELSLPDDVVRHL-QVLRLRTDDPLILFDGKGGEWRARLVELGRRS 58 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117 R VE Q+ + + +R+++ +QK VE+G+ +P++T Sbjct: 59 ARVHVEAFQAVERESPLLLSLAQGVSTGDRMEFTLQKGVELGIAVFQPLVTERAMLKLAG 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + +R +A EQC +P I P TL L + Sbjct: 119 ERAERKHERWNDIVRAACEQCGRNRIPEIRPLMTLAAFLAQPRADAARFILSPAGE---- 174 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +L +L GPEGG S+E+ + + PL LGPR+LR++TAA+AA A + Sbjct: 175 -RRLADYPAPQAAWLLAGPEGGLSSQEEAAAMAAGW-EPLRLGPRVLRTETAALAAAAAM 232 Query: 238 QAICGDW 244 Q + GD+ Sbjct: 233 QTLWGDF 239 >gi|239818235|ref|YP_002947145.1| 16S ribosomal RNA methyltransferase RsmE [Variovorax paradoxus S110] gi|239804812|gb|ACS21879.1| protein of unknown function DUF558 [Variovorax paradoxus S110] Length = 244 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 16/230 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R PL + + VLRM+ GD + LF+G GE+ + + +G+S Sbjct: 1 MPRFHCPVPLTAGASLELPPGPARH-VQVLRMQPGDALTLFDGSGGEYAATVERMGRSDV 59 Query: 67 FKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 ++ V R+D++++K+ E+G+ +I+P+ T + + Sbjct: 60 SVAIGAHAPAEREAVRSVHLAVGMPANERMDWLVEKATELGVASIQPLATAHGVLRLSGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL---EFLLKNW--DHNCQIVFADETCG 173 I+A EQC +P I+P + + ++V + G Sbjct: 120 RAEKKRAHWEAIAIAACEQCGRNRVPRIHPVRPFSGPSAWIGAHAGEAPLRLVLSL-AEG 178 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 + + +V +L GPEGG S E++ + F P++LGPR+ Sbjct: 179 MRRLADATASAPADRSVLVLSGPEGGLSSAEEQKALACGFA-PVTLGPRV 227 >gi|168008547|ref|XP_001756968.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691839|gb|EDQ78199.1| predicted protein [Physcomitrella patens subsp. patens] Length = 353 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 8/237 (3%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R + P + GD++ ++ VLR+ D I LF+G G + V K+ Sbjct: 105 LPRFHISSLPAVKGMTVRVDGDEFWHMTRVLRLNVNDRIELFDGNGGLVEGTLLKVTKNC 164 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP----IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120 V +R + + + +K R D++++K E+G + P++T+ + + Sbjct: 165 AEVVATTARRVLPLTGPNWHVAAAFGNLKGGRADWLVEKCTELGAQTLTPLLTQRSASVA 224 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 DR +++A +QC L + PT L+ LL + F + Sbjct: 225 EQRNDRWNRISMAATKQCQRLHALDVREPTQLKHLLAEVKKAD-VAFLAAAGAPPLAQSL 283 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + +LIGPEG + EE E L P+ LG LR +TAA+A + V Sbjct: 284 LQRPECLRGGLLLIGPEGDFTPEEIELLIDAG-AMPVGLGQLRLRVETAAIAILTTV 339 >gi|91205956|ref|YP_538311.1| hypothetical protein RBE_1141 [Rickettsia bellii RML369-C] gi|157826683|ref|YP_001495747.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia bellii OSU 85-389] gi|91069500|gb|ABE05222.1| unknown [Rickettsia bellii RML369-C] gi|157801987|gb|ABV78710.1| hypothetical protein A1I_01600 [Rickettsia bellii OSU 85-389] Length = 234 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 9/226 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L + + D HY+ VLR+K D +FNG DGE+L++I+ Sbjct: 1 MKFN----RIYINNHLAENIKLELGSDHTHYIKTVLRLKVNDQFRIFNGTDGEFLAQITK 56 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + + ++ ++ R +S + S IK ++L I + ++G+ I +IT Q Sbjct: 57 LDRNNLIITIQECLRKPRAESSLTLAMSIIKQDKLMLAINMATQLGVTKIVTLITERCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + L P I P +++ LK +N +++A+E ENS+ Sbjct: 117 RSVNIERLTKCVIEATEQSERLNPPVIEPAISIQNYLK--KNNNFVLYANEHEKEENSIL 174 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 KL+ I N++I+IGPEGG+ ++E L S +SLG ILR Sbjct: 175 KLN--KDITNISIVIGPEGGFTNDEIALLASYKNAYSISLGKNILR 218 >gi|21911245|ref|NP_665513.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS315] gi|28896621|ref|NP_802971.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes SSI-1] gi|21905458|gb|AAM80316.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28811875|dbj|BAC64804.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 249 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGVKYLAKVTSSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LKN I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKNLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|291559325|emb|CBL38125.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium SSC/2] Length = 245 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 26/249 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65 + R F+ + G +++ +VLRMK GD + L NG D E+ + +I Sbjct: 1 MYRFFIKEEQIHDGMIEICGSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTI 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 K+E +T+ + K ++++ ++QK+VE+G+ I PV + Sbjct: 61 LAKIEDVHGMETELPVKITLYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177 + R T +SAA+Q +P + + +L+ D +V +E G + S Sbjct: 121 KAAKKVSRWNTIALSAAKQAKRGIIPEVREMKNFKDILEEVQDIEFMLVPYEEAKGMQAS 180 Query: 178 LEKLHAIAHIPNVAILIGPEGG--------YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E + ++ + EE E L + T +SLG RILR++TA Sbjct: 181 KELISQAKGKKSIG--------IIIGPEGGFEKEEIEQLKAAGGQT-MSLGKRILRTETA 231 Query: 230 AVAAMALVQ 238 + ++++ Sbjct: 232 GMTVLSILM 240 >gi|146319760|ref|YP_001199472.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis 05ZYH33] gi|146321960|ref|YP_001201671.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis 98HAH33] gi|145690566|gb|ABP91072.1| Uncharacterized protein conserved in bacteria [Streptococcus suis 05ZYH33] gi|145692766|gb|ABP93271.1| Uncharacterized protein conserved in bacteria [Streptococcus suis 98HAH33] gi|292559369|gb|ADE32370.1| hypothetical protein SSGZ1_1914 [Streptococcus suis GZ1] Length = 252 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 11/249 (4%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + + +++ FV+ + D ++ V+R++ GD I+L + L+++ Sbjct: 1 MEARMQQYFVNGRAPQGMFQISDKDTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQ 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116 +E + + V K ++L+++ QK+ E+GM A+ V+ Sbjct: 61 SQSVEIIEELTDNVELPISVTIAMGFPKGDKLEFVAQKATELGMSALWAFPADWSVVKWD 120 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175 + +++ AAEQ +P + L QI+ A E E Sbjct: 121 GKKLAKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEG 180 Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N ++ L + +V +++GPEGG EE V LGPRILR++TA + Sbjct: 181 EQANLVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLY 239 Query: 233 AMALVQAIC 241 A++ + Sbjct: 240 ALSTISYAT 248 >gi|259503162|ref|ZP_05746064.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041] gi|259168877|gb|EEW53372.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041] Length = 250 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 13/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + H+L VLR + G + L +L+++ Sbjct: 1 MQRYFVAAK-PGTAPITLPPEIAHHLTTVLRAQRGTQVELVLADHQAYLAEVVATQPVTT 59 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K+ + ++ V + K + ++++QK+ E+G I + Sbjct: 60 VKLLQKLAGNSELPVQVTLLCGLPKTKEKPEWIVQKATELGATTIAFFEAERSVSHWAAN 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177 + R++ AAEQ P + L L ++V +E+ + Sbjct: 120 KRERKLARLQKIADGAAEQSHRNYQPQVTYYPGLHQALVANPAPVRLVAWEESAKQGETS 179 Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++L + + + GPEGG + E E + + VT + LGPRILR++TA + +A Sbjct: 180 ALAQQLAKLTAGGRLVAIFGPEGGLTTGEVEQMQAAG-VTAVGLGPRILRTETAPLYFLA 238 Query: 236 LVQAIC 241 V C Sbjct: 239 AVSYAC 244 >gi|172039252|ref|YP_001805753.1| hypothetical protein cce_4339 [Cyanothece sp. ATCC 51142] gi|171700706|gb|ACB53687.1| DUF558-containing protein [Cyanothece sp. ATCC 51142] Length = 241 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 6/231 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R+ ++ + +Q HYL +VLR+KE ++ +G+ +L K++ I Sbjct: 4 RIIIELTQKQGNIITLTPEQKHYLKNVLRLKENSEFIVLDGQYNTYLVKLNNDNGQI--- 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 ++ +V + + K D +I+ E+G+ I P+I++ T + + + +DR Sbjct: 61 IKPLKEETELPINVTLMIALPKGKGFDEVIRSCTELGVNTIIPIISQRTLLKPSSHKLDR 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R A EQ + +P I P + LKN Q + T L Sbjct: 121 WRKIVKEATEQSERQRVPTILEPISFSEALKNTKQPNQNCYICVTRKHAKHLLTYLLPEI 180 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ I G EGG+ +E +L F+ ++LG R+LR+ TA + A++LV Sbjct: 181 TNSITIATGCEGGWTEKEINEAINLGFI-AVNLGSRVLRAVTAPLVALSLV 230 >gi|169824474|ref|YP_001692085.1| hypothetical protein FMG_0777 [Finegoldia magna ATCC 29328] gi|167831279|dbj|BAG08195.1| conserved hypothetical protein [Finegoldia magna ATCC 29328] Length = 241 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F + I + G+ Y+++ + LR+ +G I G D ++++I + I Sbjct: 1 MYRTFRNQEDKIDDKILIKGEDYNHIKNSLRLSKGSLIHQVIG-DTIFVTEIEEITSNEI 59 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+ + Q ++ +K+++ +Y+IQK+ E+G+ I V T T + Sbjct: 60 ICKIIDEDSIQYESPLNITLYQCILKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDK 119 Query: 125 D------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + +++Q +P I + +KN + +VF + + S Sbjct: 120 KWNKKKDRFEKIALESSKQSKRTVIPEIEGLIKINE-IKNTSNCLNLVFYENE---KESF 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + + ++ I IGPEGG + + L S F +SLG RILR+DTA + A++++Q Sbjct: 176 KSFLSNSKNKDINIFIGPEGGLSEDNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQ 234 Query: 239 AICGD 243 GD Sbjct: 235 YELGD 239 >gi|255534646|ref|YP_003095017.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae bacterium 3519-10] gi|255340842|gb|ACU06955.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae bacterium 3519-10] Length = 257 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQ 79 + K + ++ ++ VLRM++G+ I + +GK K+ GK + V E Sbjct: 37 EVKINEEEQQHILKVLRMRDGEEISVTDGKGNLATGKLITEGKKVSLNVSETHQNLPNFS 96 Query: 80 SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138 + + +P K +R+++ ++K+ EM + + + T T+ + N+D++R ++SA++Q Sbjct: 97 TQLHIAIAPTKNIDRIEFFLEKATEMAVSEVTILQTEKTERKNLNIDKLRKQSVSASKQS 156 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P + T +KN D V +L+ + H LIGPEG Sbjct: 157 LRYHFPKVNDITKFSDFIKNLDPETTFVAHCNESLERFNLKDIQPQKHT---TFLIGPEG 213 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +E L + +SLG + LR++TA + +A Sbjct: 214 DFSEKEINMLADKG-IKAVSLGNQRLRTETAGIF-VAAWNY 252 >gi|298490147|ref|YP_003720324.1| hypothetical protein Aazo_0765 ['Nostoc azollae' 0708] gi|298232065|gb|ADI63201.1| protein of unknown function DUF558 ['Nostoc azollae' 0708] Length = 235 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 114/242 (47%), Gaps = 13/242 (5%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S L+R+ ++ ++Q + Q HYL VLR ++GD + +G WL+++ +G+ Sbjct: 1 MSQLQRITINPSQLQESQLLLTPQQQHYLLRVLRSRDGDKFIAMDGISKWWLAQL--IGE 58 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +E + + + + K N D +++ S E+G+ I P+++ T + + Sbjct: 59 QGQI-LEPLEVTTELPVSITLMVALPKGNGCDDIVRCSTELGVTCILPILSDRTLLKPSP 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R R + AAEQ + +P I P + C + + L Sbjct: 118 QKLERWRRIALEAAEQSERAFVPTILEPVAFRTAINECAS-----IHRYICEARGNYPHL 172 Query: 182 HAIAHI--PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +++ + I IGPEGG+ +E E F P+SLG RILR+ TA + A++L+ A Sbjct: 173 TTVSNKFSSEIIIAIGPEGGWTDQELEIALESGF-QPISLGRRILRAVTAPIVALSLIAA 231 Query: 240 IC 241 C Sbjct: 232 AC 233 >gi|269958740|ref|YP_003328527.1| putative methyltransferase [Anaplasma centrale str. Israel] gi|269848569|gb|ACZ49213.1| putative methyltransferase [Anaplasma centrale str. Israel] Length = 243 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 7/229 (3%) Query: 9 RLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL+ + + + + Q Y+ V+R + D +LLF+G GEWL +IS + K + Sbjct: 11 RLYHEGDEIRTGARVTLNSSQARYVRDVMRARHDDAVLLFDGIRGEWLCRISCISKKTVE 70 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E SR + + F+ +K++ + +++++ EMG+ +P+ T Y+ + + Sbjct: 71 VEAETLSRKHVRTRTLVLCFALVKSDTVRNVVRQATEMGVTLFQPIRTEYSSVHDVDSKK 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + + A+EQC +P + P L + + Q V DET G E LH Sbjct: 131 CHLWAVEASEQCGRQDVPEVAPVVDFRTLCEFHNPERQFVLCDETGGGRPPYEVLHG--- 187 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +V +++GPEGG+ EE S F +SLGPRILR DTA V A+A Sbjct: 188 GRDVWVVVGPEGGFSDEELRL--SENFCDKMSLGPRILRVDTAVVCALA 234 >gi|58579175|ref|YP_197387.1| hypothetical protein ERWE_CDS_05110 [Ehrlichia ruminantium str. Welgevonden] gi|58417801|emb|CAI27005.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 239 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 9 RLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL+V + K HY++ V+R + D + +FNGKDGEW+ +I + I+ Sbjct: 9 RLYVPEIQLPNPSIIKLDTLASHYISKVMRATKCDYVKIFNGKDGEWIGEICELSNHIKI 68 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 +++ +R Q K ++ F +K L +I+++ EMG+ ++P+ T++ ++ N+D+ Sbjct: 69 RIDKLTRKQVKSKNLTLCFGIVKGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKC 128 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R + I A+EQC+ L +P I P + L K N + DET + E L + Sbjct: 129 RKWAIEASEQCERLDIPQISHPISFTDLKKLDTANINFIICDETGNGKKPAEILT---NK 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ I++GPEGG+ SEE + F LSLG RILR DTA V+A+A V Sbjct: 186 NNIYIIVGPEGGFSSEELDFA--YTFCNGLSLGTRILRVDTAVVSALAYVN 234 >gi|255282406|ref|ZP_05346961.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM 14469] gi|255266990|gb|EET60195.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM 14469] Length = 246 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 31/255 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGK-S 64 + F + +G +++ +VLRM+ G L +G+ + +I+ V K Sbjct: 1 MHHFFAEPAQITGDVVCLTGSDVNHIRNVLRMEAGARFTLSDGQSSRLYTCRITSVEKEK 60 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I +E S T+ S + K++++D+++QK+VE+G+ I PV+T+ T Sbjct: 61 IWAAIESVSEEGTELPSRIWLFQGLPKSDKMDWIVQKAVELGVYGIVPVMTKRTVVRLDA 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176 + R AA+Q + +P + P + L+ D +++ + G E Sbjct: 121 KKEKARCARWNAIAEGAAKQSGRMLVPQVKEPVSFAQALQMAQDMQIRLIPYELAGGMEK 180 Query: 177 SLEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + IA +VA+ I FV ++LG RILR+ Sbjct: 181 TRRIFSQIAPGQSVAVFIGPEGGFEEEE----------VCRAEEAGFVR-VTLGKRILRT 229 Query: 227 DTAAVAAMALVQAIC 241 +TA ++A+A++ + Sbjct: 230 ETAGLSALAMLGYVL 244 >gi|302380721|ref|ZP_07269186.1| RNA methyltransferase, RsmE family [Finegoldia magna ACS-171-V-Col3] gi|302311664|gb|EFK93680.1| RNA methyltransferase, RsmE family [Finegoldia magna ACS-171-V-Col3] Length = 241 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F + I + G+ Y+++ + LR+ +G I G D ++++I + I Sbjct: 1 MYRTFRNQEDKIDDKILIKGEDYNHIKNSLRLSKGSLIHQVIG-DTIFVTEIEEITSNEI 59 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+ + Q ++ +K+++ +Y+IQK+ E+G+ I V T T + Sbjct: 60 ICKIIDEDSIQYESPLNITLYQCILKSDKNEYIIQKATELGVNKIVFVETERTVVKLDDK 119 Query: 125 D------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + +++Q +P I + +KN + +VF + + S Sbjct: 120 KWNKKKDRFEKIALESSKQSKRTVIPEIEGLIKINE-IKNTSNCLNLVFYENE---KESF 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + + ++ I IGPEGG + + L S F +SLG RILR+DTA + A++++Q Sbjct: 176 KSFLSNSKKKDINIFIGPEGGLSEDNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQ 234 Query: 239 AICGD 243 GD Sbjct: 235 YELGD 239 >gi|114777358|ref|ZP_01452355.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1] gi|114552140|gb|EAU54642.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1] Length = 240 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 14/240 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL ++ PL T + HYL V+R GD ++LFNG GE+ + I + + Sbjct: 4 RLHLNQPLEAGTTVDLPANLAHYLHTVMRHAVGDTVILFNGHGGEYHAVIDSLSRKAASC 63 Query: 69 VEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + ++ V + ++ +++ ++QK E+G + + Sbjct: 64 RITAFENIDREMACRVHIVQGACRSEKIETVLQKGTELGAAGFHITRSERSSLKLDGSKL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR R AAEQC +P ++ T L + H + T S + Sbjct: 124 DARLDRWRKIVTEAAEQCGRTIVPTVHWHTRLSDI---PCHGLGLTLHPHTAASWQQIRT 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 I + + +GPEGG+ + TL F ++ GPRILR++TAA A +A +QA+ Sbjct: 181 --EIRESSEITLAVGPEGGWSDADIATLGERGF-RSIAFGPRILRTETAAPALLAAIQAV 237 >gi|167767378|ref|ZP_02439431.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1] gi|167711353|gb|EDS21932.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1] Length = 245 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 26/249 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65 + R F+ + G +++ +VLRMK GD + L NG D E+ + +I Sbjct: 1 MYRFFIKEEQIHDGMIEICGSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTI 60 Query: 66 RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 K+E +T+ + K ++++ ++QK+VE+G+ I PV + Sbjct: 61 LAKIEDVHGMETELPVKITLYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177 + R T +SAA+Q +P + + +L+ D +V +E G + S Sbjct: 121 KAAKKVSRWNTIALSAAKQAKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQAS 180 Query: 178 LEKLHAIAHIPNVAILIGPEGG--------YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E + ++ + EE E L + T +SLG RILR++TA Sbjct: 181 KELISQAKGKKSIG--------IIIGPEGGFEKEEIEQLKAAGGQT-MSLGKRILRTETA 231 Query: 230 AVAAMALVQ 238 + ++++ Sbjct: 232 GMTVLSILM 240 >gi|323126439|gb|ADX23736.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 252 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGIKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGTSALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LARELKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 ISYAL 243 >gi|116747664|ref|YP_844351.1| hypothetical protein Sfum_0215 [Syntrophobacter fumaroxidans MPOB] gi|116696728|gb|ABK15916.1| protein of unknown function DUF558 [Syntrophobacter fumaroxidans MPOB] Length = 254 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 14/249 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 KR FV+ + + D H++ HVLR++ G+ + L +G G WL I G ++R Sbjct: 4 KRFFVERAVPGEGTIDLGVDAAHHIEHVLRLRAGEEVELIDGVGGGWLGAIVEAGTGTVR 63 Query: 67 FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ + + S ++ + + +R+D +++++ E+G+ +R +Q Sbjct: 64 VRITGRLGPPAESSLNLSLALAFSRADRMDLVLRQATEIGVNRFIAFRSRRSQYALTGRA 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGS 174 ++R + A QC L +P + + + LL + N + A E Sbjct: 124 AGKRLERWQRIAREAVCQCGRLNVPEMVILSDVRELLAKIEQRERSGNLLRILAFERGNG 183 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + ++ A V + +GPEGG+ SEE E L F + LGPRILR +TAA + Sbjct: 184 KGIVDLHRAFPQCTEVMVAVGPEGGWSSEEAELLTRNGF-HAVHLGPRILRLETAAAIVL 242 Query: 235 ALVQAICGD 243 + VQ + GD Sbjct: 243 SSVQLLWGD 251 >gi|254253271|ref|ZP_04946589.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158] gi|124895880|gb|EAY69760.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158] Length = 303 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 17/222 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDALALFDGTGGQYRARLIEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 SALAQIDGFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC +P + P L D +++ + Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPHVAPVLGFNAWLDALPAAPADGELRLLLSPRA 186 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 L A V +LIGPEGG +E+ + F Sbjct: 187 S---IPFASLPDAAPAAPVTLLIGPEGGLSPDEESAARARGF 225 >gi|332522528|ref|ZP_08398780.1| RNA methyltransferase, RsmE family [Streptococcus porcinus str. Jelinkova 176] gi|332313792|gb|EGJ26777.1| RNA methyltransferase, RsmE family [Streptococcus porcinus str. Jelinkova 176] Length = 248 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ P C + ++ V+R+ +GD + L + L+ +S Sbjct: 1 MQQYFIKGP-CQNPVIIEDKETIKHMFQVMRLTDGDQVCLVFEDGIKRLAAVSDSAAHTF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 ++ +S V K ++L+++ QK E+G AI V + Sbjct: 60 TILQALDQSVELPVAVTIASGFPKGDKLEWVTQKVTELGASAIWGFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +++ AAEQ +P + L+ + A E Sbjct: 120 AKKQEKLLKIAQGAAEQSKRNIIPEVELFEQKSAFLRQLSGFDYVFVAYEESAKIGEQAA 179 Query: 181 ----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L A ++ + GPEGG +E + ++ + LGPRI+R++TA + ++ Sbjct: 180 FATGLKACQPGDSLLFIFGPEGGLSPQEVQDFEAIG-AQMIGLGPRIMRTETAPLYVLSA 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|139474464|ref|YP_001129180.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes str. Manfredo] gi|134272711|emb|CAM30983.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 249 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLADEAEVVLVFDDGVKYLAKVTNSMAQEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKTEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|284052447|ref|ZP_06382657.1| 16S ribosomal RNA methyltransferase RsmE [Arthrospira platensis str. Paraca] gi|291566292|dbj|BAI88564.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 252 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 18/252 (7%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ L+R+ + Q + Q HYL VLR+++GD ++ +G+ G WL+ I Sbjct: 1 MR---ELQRIAIAPEQFHDQQVDLTAGQQHYLGRVLRLQQGDRFIILDGRGGWWLA-IWK 56 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119 G++ VE + V S K + + +++ + E+G+ + P+I+ T Sbjct: 57 GGQNATV-VEPIRVNNELPIPVTLWVSMPKGSGFEEIVRCTTELGVSRLVPIISARTVVV 115 Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175 + + R R AAEQ + LP I P +++ L + Sbjct: 116 PSPQKLARWRRIATEAAEQSERQILPEITDPLSIQQAWETLSDQGEEVDKYICVARGDFP 175 Query: 176 NSLEKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L L A ++ + IGPEGG+ + E E + F P+SLG RILRS T Sbjct: 176 HLLNCLLASRTGQGKGYVYNSLLLAIGPEGGWTTPEVEEAINRGF-QPVSLGSRILRSVT 234 Query: 229 AAVAAMALVQAI 240 A + A++LV A+ Sbjct: 235 APMVALSLVAAV 246 >gi|34541729|ref|NP_906208.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis W83] gi|34398047|gb|AAQ67107.1| conserved hypothetical protein TIGR00046 [Porphyromonas gingivalis W83] Length = 248 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 9/231 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I+ + D+ ++ VLRM+ GD + L +G+ + + I KS V Q Q Sbjct: 11 IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQEPWQ 70 Query: 77 -TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K + R+++M++K VE+G+ + + + +++ +R+ ISA Sbjct: 71 KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-----IPN 189 +Q + P I ++ ++ + + A + + + Sbjct: 131 MKQSLKASFPVIQVNIPIQTVIADTPKTAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 V ILIGPEG + E E+ F P+SLG LR++TA + A + + Sbjct: 191 VLILIGPEGDFSPSEVESALLAGFA-PVSLGESRLRTETAGLVACQWIHTL 240 >gi|319941739|ref|ZP_08016061.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis 3_1_45B] gi|319804672|gb|EFW01539.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis 3_1_45B] Length = 249 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 15/246 (6%) Query: 8 KRLFVDFP---LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R F+D P + + + + LR+ G+ + LFNG W + + S Sbjct: 4 PRFFIDAPTDAFQLGGRFELPPKTARHAGRSLRLAAGEIVELFNGTGAAWSGPVGFSDAS 63 Query: 65 IRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++E+++ R+ + + S + + D++++K+VE G+ I + + Sbjct: 64 AWVELEHRTDRTAESPLAITLLQSLVAPEKADWIVEKAVEAGISEIIFMPAERSVTKLAG 123 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R+ SAAEQC +P + +LE K + + V A S S Sbjct: 124 ERLEKRLARLTDIARSAAEQCGRNVVPLVRAVPSLEAGFKTVSGDVKFVLAPGADASAAS 183 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +VA +GPEGG+ + E E + + P LGPR+LR++TA +AA Sbjct: 184 ----SMLPGLLSVAFAVGPEGGFSAREIELAAAHGW-RPQLLGPRVLRTETAGLAAAIWA 238 Query: 238 QAICGD 243 Q + GD Sbjct: 239 QTLVGD 244 >gi|30248783|ref|NP_840853.1| hypothetical protein NE0779 [Nitrosomonas europaea ATCC 19718] gi|30180378|emb|CAD84690.1| Conserved hypothetical protein 46 [Nitrosomonas europaea ATCC 19718] Length = 252 Score = 208 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 21/236 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 R F P+ + D H+ A VLR+K GD + LF+G GE+ ++ + KS + Sbjct: 4 RFFHTPPIRDAEWITLNSDTSHHAAQVLRLKPGDAVTLFDGTGGEFSGRLEQISKSGCQV 63 Query: 68 KVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++E + + ++ + ++D++IQK++E G I+P+ITR T + Sbjct: 64 RIECHLPVERESPLMIELAQAVCANEKMDWIIQKAIEQGATRIQPLITRRTLIRLTGERA 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---------WDHNCQIVFADET 171 + I+A EQC +P + P L L+ I+ + Sbjct: 124 DKREQHWQKIIIAACEQCGRNQIPLLLPLMPLSHWLEQKLAEKYKNDNPAGHDIMLSP-- 181 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + L +L + +L GPEGG+ EE + H F+ P+ LG RILR++ Sbjct: 182 -AAHQRLVELSPPRTGECLTLLTGPEGGFTGEETDAAHLAGFI-PVRLGNRILRTE 235 >gi|309792795|ref|ZP_07687238.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6] gi|308225159|gb|EFO78944.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6] Length = 244 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 8/239 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R FV L + + H L VLR+ G I+L +G+ ++ +++ V ++ Sbjct: 6 RFFVAPELLTTEFVRLEDAELVHQLGRVLRLAAGTQIMLLDGQGNQYTLELTGVSRTCVT 65 Query: 68 -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTH-Y 122 +V + D+ + I+ R ++++QK E+G+ PV + T Sbjct: 66 GRVLSTGPAPDPAYDLTLYVALIRPERFEWVLQKGTELGVRRFVPVHFSRCLPNERTDGR 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +R + AAEQ LP + P + E E L Sbjct: 126 KTERWQRIIREAAEQAWRGRLPELAAPLSFAAACTAVAATQYTYILWEGSAP-PLREHLA 184 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A + AIL GPEGG +E + P+SLGP ILR++TA + A A++ Sbjct: 185 PSAATASYAILSGPEGGITPDEIALATQHG-IMPVSLGPHILRAETAPIMAAAVLCYAF 242 >gi|319943087|ref|ZP_08017370.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599] gi|319743629|gb|EFV96033.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599] Length = 275 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 101/272 (37%), Gaps = 37/272 (13%) Query: 8 KRLFVDF------PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 R+ + P H+L VLR GD I +F+G+ W ++++ Sbjct: 3 PRIHLPALADQPAPPVPSDPLPLDEPAAHHLLRVLRRGIGDEIEVFDGQGRCWHAQVAST 62 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118 + + + ++D+ I+K+VE+G+ I P+++ + Sbjct: 63 KPATVTLQAALPAEPPPRLRLGLAQCLSTAEKMDWTIEKAVELGVSHIVPLLSARSVVKL 122 Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADET 171 + + ++AA QC LP I P + L + H + V + Sbjct: 123 DGARAEKRVQHWQRLVVAAAMQCGRSRLPEIAPIQPVGTWLASLPAPQAHERRWVLSPLA 182 Query: 172 CGS--------------------ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 S + ++ + A P +L GPE G E E + Sbjct: 183 ESSLMAQASALAAQTGTPLAWDQDQPIDAAASEAATPTAWLLCGPESGLAETEVEQALAQ 242 Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + P LGPR+LR++TA + + ++QA GD Sbjct: 243 GW-QPALLGPRVLRTETAGLVGLTVLQAALGD 273 >gi|188994065|ref|YP_001928317.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis ATCC 33277] gi|188593745|dbj|BAG32720.1| conserved hypothetical protein with DUF558 domain [Porphyromonas gingivalis ATCC 33277] Length = 248 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 9/231 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I+ + D+ ++ VLRM+ GD + L +G+ + + I KS V Q Q Sbjct: 11 IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 70 Query: 77 -TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K + R+++M++K VE+G+ + + + +++ +R+ ISA Sbjct: 71 KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-----IPN 189 +Q + P I ++ ++ + + A + + + Sbjct: 131 MKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 V ILIGPEG + E E+ F P+SLG LR++TA + A + + Sbjct: 191 VLILIGPEGDFSPSEVESALLAGFA-PVSLGESRLRTETAGLVACQWIHTL 240 >gi|167580555|ref|ZP_02373429.1| hypothetical protein BthaT_20538 [Burkholderia thailandensis TXDOH] Length = 226 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 17/222 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 9 AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKR 67 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 68 GALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 127 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADET 171 + + R ++ EQC +P + P + L +++ + Sbjct: 128 GERADKRVSHWRGVVRASCEQCGRNRVPDVAPVRGFDAWLDALPDAPAAGELRLLLSPRA 187 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 L +V +LIGPEGG +E++ + F Sbjct: 188 SV---PFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGF 226 >gi|167618664|ref|ZP_02387295.1| hypothetical protein BthaB_20312 [Burkholderia thailandensis Bt4] Length = 227 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 17/223 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ +++ + K Sbjct: 9 AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKR 67 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 + V +++D++I+K+VE+G+ A+ P+ T Sbjct: 68 GALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 127 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADET 171 + + R ++ EQC +P + P + L +++ + Sbjct: 128 GERADKRVSHWRGVVRASCEQCGRNRVPGVAPVRGFDAWLDALPDAPAAGELRLLLSPRA 187 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 L +V +LIGPEGG +E++ + F Sbjct: 188 SV---PFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFA 227 >gi|225871292|ref|YP_002747239.1| hypothetical protein SEQ_2023 [Streptococcus equi subsp. equi 4047] gi|225700696|emb|CAW95299.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ + + + D ++ V+R+ + + ++L + L+++S Sbjct: 1 MQQYFIKG--RAEKIVQLTDKDTIKHMFQVMRLTDKEELVLVFDDGIKRLARVSDSSAYE 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 ++ + +V K ++LD + QK+ E+G AI V+ ++ Sbjct: 59 VELIKELEENLEMPVEVTIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ + AAEQ +P I LLK + A E Sbjct: 119 LAKKQEKLAKIALGAAEQSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERS 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L ++ V + GPEGG S+E + +T + LGPRI+R++TA + A++ Sbjct: 179 TLARELAGLSPGQKVLFIFGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALS 237 Query: 236 LVQAIC 241 V Sbjct: 238 AVSYAL 243 >gi|195978884|ref|YP_002124128.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975589|gb|ACG63115.1| hypothetical protein Sez_1788 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 248 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 98/246 (39%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ + + + D ++ V+R+ + + ++L + L+++S Sbjct: 1 MQQYFIKG--RAEKIVQLTDKDTIKHMFQVMRLTDKEELVLVFDDGIKRLARVSDSSAYE 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 ++ + +V K ++LD + QK+ E+G AI V+ ++ Sbjct: 59 VELIKELEENLEMPVEVTIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ + AAEQ +P I LLK + A E Sbjct: 119 LAKKQEKLAKIALGAAEQSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERS 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L ++ V + GPEGG +E +T + LGPRI+R++TA + A++ Sbjct: 179 TLARELAGLSPGQKVLFIFGPEGGISPKELAGFKQAGAIT-VGLGPRIMRTETAPLYALS 237 Query: 236 LVQAIC 241 V Sbjct: 238 AVSYAL 243 >gi|145588414|ref|YP_001155011.1| hypothetical protein Pnuc_0226 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046820|gb|ABP33447.1| protein of unknown function DUF558 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 253 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 106/250 (42%), Gaps = 19/250 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS- 64 + + ++ P + + + H+L V R++ G+ +F+G ++ + GKS Sbjct: 1 MPQFYLPGPWESQKPTALTPEVAHHL-RVRRIQVGETFPVFDGLGQVAQGELLSLSGKSG 59 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + + +++D++++K+VE G I P+ + Sbjct: 60 LAQLSNIRSDTHREAPYAITLAQGLAGGDKMDWIVEKAVETGAQIIAPLQCERSILKLTR 119 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETC 172 + + +A EQCD L + P T L++ +++ + + Sbjct: 120 SSDLERAQKRLLHWEGIIQAACEQCDRTVLAKLEPIQTFSSYLQDGVKPKLKLLLSPDAT 179 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 SL + N+ ++IGPEGG+ +E++ + + +SLG R+LR++TA V Sbjct: 180 ---QSLYSVLIENEPQNIILMIGPEGGHSPDEEKQAETAGY-QLVSLGERVLRTETAGVV 235 Query: 233 AMALVQAICG 242 A+ V ++ G Sbjct: 236 AITAVHSVWG 245 >gi|71904341|ref|YP_281144.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS6180] gi|71803436|gb|AAX72789.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180] Length = 249 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLADKAEVVLVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSGFDHIFVAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|167042827|gb|ABZ07545.1| putative protein of unknown function (DUF558) [uncultured marine microorganism HF4000_ANIW137I15] Length = 261 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 120/245 (48%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 + VD Q + + ++ ++ +R K GD I + +G+ E+ +++ + + Sbjct: 1 MPVFRVDPGNVRARQLRFTAEEAGHI-RAMRHKRGDVIRVSDGEFTEYEVELTELTHQGA 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 ++ + + ++ + K +LD ++QK+VE+G+ I P+ + Sbjct: 60 AGRIRGRKEIPEDRVVIRLGQAVPKGEKLDGVVQKAVELGVHFIHPIFAERSVPRLDERR 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178 + R R +A +QC+ + + P +L FL ++ D + ++V + + Sbjct: 120 AADRLKRWRRVAEAARKQCERVRPMEVAAPGSLLSFLDESEDADLKVVLHERSTVG--LR 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L I +VA+L+GPEGG+ E +T + F+ P LG RILR++TA +AA+A+++ Sbjct: 178 KILSDTRDIRSVALLVGPEGGFSETEVQTARTAGFI-PCGLGTRILRTETAPIAAIAILE 236 Query: 239 AICGD 243 + GD Sbjct: 237 YVLGD 241 >gi|251796224|ref|YP_003010955.1| hypothetical protein Pjdr2_2213 [Paenibacillus sp. JDR-2] gi|247543850|gb|ACT00869.1| protein of unknown function DUF558 [Paenibacillus sp. JDR-2] Length = 258 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 19/254 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + + G+ + V+RMK + + +G L+ + S Sbjct: 1 MQRYFVAAEQFDGSSVRLIGEDAFHAVRVMRMKPEEKFIASDGISRVVLASVREAASSEV 60 Query: 67 FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 VE V S K ++++ +IQK E+G A P + + Sbjct: 61 VADIVEELPMDSESSWSVTIAQSLPKGDKMELVIQKGTEIGAYAFAPFQSERMIVQYDGK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R AAEQ +P I P + L + +F E G + Sbjct: 121 KEAKRLERWSKIAKEAAEQSHRCRVPAIEPVRSWRELKEVIPTFDLALFCYEREGDAAAG 180 Query: 179 EKLHA----------IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +A P V +++GPEGG+ + + LG RILR++T Sbjct: 181 TGIRDAVLNWKQAGHMAAEPKVLLIVGPEGGFTER-EADEAEAAGAVIVGLGRRILRTET 239 Query: 229 AAVAAMALVQAICG 242 A + + + G Sbjct: 240 AGIVGLTCLLYEAG 253 >gi|294338581|emb|CAZ86910.1| putative Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498 methyltransferase) rsmE [Thiomonas sp. 3As] Length = 236 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 14/234 (5%) Query: 9 RLFVD--FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 R ++ + + VLR+KEG+ + +F+G GEW ++ + Sbjct: 4 RFYIPPTEAMLAPGLLTLPAATAKH-VKVLRLKEGEPVAVFDGTGGEWSGEV--IDPKTL 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + + + V R+D +++K+VE+G+ AI+P+ITR + + Sbjct: 61 LLRTHHAVEREADVRVMLAVGMPANERMDALVEKAVELGVAAIQPLITRRSVLRLQGERA 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + I+A EQC +P + P TL L++ ++ + S + Sbjct: 121 QRRVAHWQGVAIAACEQCGRNRVPEVAPVATLSDWLQHLGNDNARL--HRCVLSPLATRA 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L A + ++ GPEGG +E L F +SLGPR+LR+DTA +AA+ Sbjct: 179 LEPFAAGESGWMVSGPEGGLGEDEIALLQRSGF-QAVSLGPRVLRADTAPLAAL 231 >gi|121606961|ref|YP_984290.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas naphthalenivorans CJ2] gi|120595930|gb|ABM39369.1| protein of unknown function DUF558 [Polaromonas naphthalenivorans CJ2] Length = 250 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 21/237 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD---GEWLSKISYVGKSI 65 R + D L T + VLR++ G+ I LFNG+ GE+ + + +G+S Sbjct: 4 RFYADVALAAGTSISLPEQTARH-VQVLRLQPGERITLFNGRGDTEGEFDATVERMGRSD 62 Query: 66 RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + + ++ + + +R+D++I+K+ E+G +I+PV++ + Sbjct: 63 VDVTIGAWTATAREAARTIHLVVGMPANDRMDWLIEKATELGAASIQPVMSERSVLRLKA 122 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-------NWDHNCQIVFADE 170 + + R I+++EQC +P I+ TL LK N + Sbjct: 123 ERADKKVAHWRGIAIASSEQCGRNRVPLIHDVATLGEWLKKSTAETGAAASNGMRLLLSL 182 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 GS E + + A + + L GPEGG E+ + F +P++LGPR+LR++ Sbjct: 183 QDGSRPLAEAVASTA-LASFTFLNGPEGGLSPAEEAAALACGF-SPVTLGPRVLRAE 237 >gi|300775606|ref|ZP_07085467.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505633|gb|EFK36770.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 231 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQT 77 + ++ ++ VLRMK+G++I + +GK K+ GK ++ E + Sbjct: 10 GNNVIINDEEQQHIVKVLRMKDGEDIHVTDGKGKLASGKLIIEGKKAGIEISEIKENMPE 69 Query: 78 KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136 + +P K +R+++ ++K+VEMG+ I + T T+ + N+D++R ++A++ Sbjct: 70 FSPMLHIAIAPTKNIDRIEFFVEKAVEMGISEITILQTEKTERKNVNIDKIRKQAVAASK 129 Query: 137 QCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 Q P I ++ LK+ D + + E L I + + LIG Sbjct: 130 QSLRFHFPVINDLIKIQDFLKSIDPEHTFVAHCHENLERI----ALKNIPKMEKLTFLIG 185 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 PEG + +E L V +SLG + LR++TA V +A Sbjct: 186 PEGDFSEKEIAFLAENK-VRAVSLGNQRLRTETAGVF-VAAWNY 227 >gi|110638000|ref|YP_678207.1| 16S ribosomal RNA methyltransferase RsmE [Cytophaga hutchinsonii ATCC 33406] gi|110280681|gb|ABG58867.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 234 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 111/239 (46%), Gaps = 12/239 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64 + LF++ + + ++ VLR+KEGD I + NG ++I+ K Sbjct: 1 MSHLFLNKDVY---SCILDEQESVHVVKVLRLKEGDAITVTNGNGIVVSAQITKADHRKC 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 +E Q ++ + + +P K +R++++++K E G+ A V+T +++ + Sbjct: 58 GYKIIEEQKLNKRSAARIHIAIAPTKNIDRMEWLVEKCTEFGIDAFSFVLTEHSERKNLP 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKL 181 + ++ +A +Q LP + L++ D++ +++ + L+ + Sbjct: 118 VAKLEKTAFAAIKQSGQPFLPHFSELLSFTAFLQSDFSDYDYKLIACLDEAPKSTILKLV 177 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +LIGPEG + +E + FV +SLG ILR++TAA+A+ ++ I Sbjct: 178 Q---PAKSCLVLIGPEGDFTQQEVRSAVEKGFVK-ISLGNSILRTETAAIASCHILNLI 232 >gi|303233811|ref|ZP_07320465.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4] gi|302495245|gb|EFL54997.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4] Length = 241 Score = 207 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F + I + G+ Y+++ + LR+ +G I G D ++++I + I Sbjct: 1 MYRTFRNQEDKIDDKILIKGEDYNHIKNSLRLSKGSLIHQVIG-DTIFVTEIEEITSNEI 59 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 K+ + Q ++ +K+++ +Y+IQK+ E+G+ I V T T + Sbjct: 60 ICKIIDEDSIQYESPLNITLYQCILKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDK 119 Query: 125 D------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 R + +++Q +P I + +KN + +VF + + S Sbjct: 120 KWNKKKDRFEKIALESSKQSKRTVIPEIEGLIKINE-IKNTSNCLNLVFYENE---KESF 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + ++ I IGPEGG + + L S F +SLG RILR+DTA + A++++Q Sbjct: 176 KSFLYNSKNKDINIFIGPEGGLSEDNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQ 234 Query: 239 AICGD 243 GD Sbjct: 235 YELGD 239 >gi|199599340|ref|ZP_03212738.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001] gi|199589779|gb|EDY97887.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001] Length = 242 Score = 207 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 10/242 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + L + + VL G L + K + +K+ Sbjct: 1 MQRFFTEHLLHSQQTVTLEPAIAKHAIKVLHYDVGAVFELADPKHRVYQAKVQTTDPLTV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +++ V+ + K ++ ++++QK+ E+G I ++ + Sbjct: 61 EIGPEITKNVELPIAVEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERI 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 MDR+ T +AAEQ +P + L + D ++V +E+ Sbjct: 121 AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGD--DAAVKLVAYEESAKKGEHAAL 178 Query: 181 LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A+ H ++ ++ GPEGG E L + F TP LGPRILR++TA + ++ V Sbjct: 179 VSALVPHPASLCVVFGPEGGISPAELALLQARGF-TPAGLGPRILRTETAPLYLLSAVSV 237 Query: 240 IC 241 + Sbjct: 238 LT 239 >gi|134267587|gb|ABO67782.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 229 Score = 207 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 13/218 (5%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS--PIKTNR 93 +RMK GD I + +I + Q + + ++ V+ + K + Sbjct: 1 MRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRIYIAQGLPKGEK 60 Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 + +IQK E+G P + + + ++R + AAEQ + LP + Sbjct: 61 WELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAEQAERTLLPIVR 120 Query: 148 PPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHA-IAHIPNVAILIGPEGGYHSE 203 P +L+ L+ + +FA E G SL L A + ++ + GPEGG+ E Sbjct: 121 APLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQPGSSLLAVFGPEGGFSRE 180 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E L F+ P SLGPRILR++TA + +A Sbjct: 181 EAEQLKQSGFL-PCSLGPRILRTETAPLYLLAAASYEW 217 >gi|255003188|ref|ZP_05278152.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str. Puerto Rico] Length = 244 Score = 207 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 9 RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL+ + + + + Q HY+ V+R K GD +LLF+G GEWL +IS + K + Sbjct: 12 RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRISCISKKTVE 71 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E R + + F+ +K + +++++ EMG+ +P+ T Y+ + + Sbjct: 72 VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSVHDIDSRK 131 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R + + A+EQC +P + P L + + + Q V DET G + E L Sbjct: 132 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 191 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V +++GPEGG+ +EE + F +SLG RIL+ DTA V A+A V Sbjct: 192 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 238 >gi|288927552|ref|ZP_06421399.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317 str. F0108] gi|288330386|gb|EFC68970.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317 str. F0108] Length = 240 Score = 207 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 8/236 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-- 67 +V + ++ + + VLR++ GD + L +G + ++++ V K Sbjct: 7 FYVPDAASTN---ELPAEEAAHASRVLRLESGDEVFLIDGTGCFFKAQLTLVTKGRCLYD 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 VE + +T + +P K +R+++ ++K+ E+G+ + +++ + ++R Sbjct: 64 IVERLPQEKTWNGRIAVAMAPTKVIDRVEWTLEKATEIGIDEFSLLNCAFSERRNVKLER 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185 + ++A +Q P + E +K + I ++ +L + Sbjct: 124 LDKIVVAAVKQSRKAWKPLLNDLQPFENFVKQPRKGAKYIAHCYAEIDKKDLYGELLQLN 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 V ILIGPEG + +E S +V P+SLG LR++TAA+AA + Q Sbjct: 184 GDEEVTILIGPEGDFSIDEVRLAMSKGYV-PISLGQSRLRTETAALAATMIAQLAF 238 >gi|320106034|ref|YP_004181624.1| hypothetical protein AciPR4_0797 [Terriglobus saanensis SP1PR4] gi|319924555|gb|ADV81630.1| protein of unknown function DUF558 [Terriglobus saanensis SP1PR4] Length = 237 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 10/227 (4%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 T +GDQ +LA VLR + G + G +++ VG+ ++ Sbjct: 16 TSASLTGDQASHLARVLRAEPGQIFDVVAG-GFLHRAEVVNVGEDAVIFTLHEEMESDAA 74 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISA 134 V + K + L++ I+K+ E+G+ I PV+ R T+ + ++R R + + Sbjct: 75 LPVHLYLAVYKFDHLEWAIEKATELGVARITPVLARRTEKHLAQASTKRVERWRRIVLES 134 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 ++Q +P + P TL LK +I+ A+ EN+L H ++A+ + Sbjct: 135 SKQSRRTEIPVVDDPATLASTLKTCTAGTRILLAE--TEQENTLAAALK-GHAGDIALAV 191 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GPEGG+ EE + + +LGPRILR++TA +AA+A+ +I Sbjct: 192 GPEGGWTPEEMALFSTQQWTHA-TLGPRILRAETACIAALAITSSIL 237 >gi|296134635|ref|YP_003641877.1| protein of unknown function DUF558 [Thiomonas intermedia K12] gi|295794757|gb|ADG29547.1| protein of unknown function DUF558 [Thiomonas intermedia K12] Length = 236 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 14/234 (5%) Query: 9 RLFVD--FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 R ++ + VLR+KEG+ + +F+G GEW ++ + Sbjct: 4 RFYIPPTEATLAPGLLTLPAATAKH-VKVLRLKEGEPVAVFDGTGGEWSGEV--IDPQTL 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + + + V R+D +++K+VE+G+ AI+P+ITR + + Sbjct: 61 LLRAHHAVEREADVRVMLAVGMPANERMDALVEKAVELGVAAIQPLITRRSVLRLQGERA 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + I+A EQC +P + P TL L++ ++ + S + Sbjct: 121 QRRVAHWQGVAIAACEQCGRNRVPEVAPVATLSDWLQHLGNDNAQL--HRCVLSPLATNP 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L A + ++ GPEGG +E L F +SLGPR+LR+DTA +AA+ Sbjct: 179 LRPFASGESGWMVSGPEGGLGEDEIALLQRSGF-QAVSLGPRVLRADTAPLAAL 231 >gi|157803384|ref|YP_001491933.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia canadensis str. McKiel] gi|157784647|gb|ABV73148.1| hypothetical protein A1E_01000 [Rickettsia canadensis str. McKiel] Length = 257 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 13/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + + D HY+ VLR+K D + +FNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSHLAENSKLELANDHIHYIKTVLRLKVNDGLRIFNGTDGEFLAQITD 56 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ- 118 +GK+ + K++ Q + +S + + IK ++L I + ++G+ I P+IT+ Q Sbjct: 57 IGKNNLSVKLKEQLKKPDTESALTLAVAIIKQDKLMLTINMATQLGITKIIPLITKRCQF 116 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N+ R+ I A EQ + L P I L+ LK +N +++A+E EN Sbjct: 117 RSV---NIKRLTKCMIEATEQSERLIPPIIEQAIKLQDYLK--KNNNLMLYANEYEKEEN 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ ++ + ++ I+IGPEGG+ +E + L S +SLG ILR Sbjct: 172 SILQITSLLNNSDIDIVIGPEGGFTIDELQLLASYKNTKSISLGSNILR 220 >gi|189184337|ref|YP_001938122.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda] gi|189181108|dbj|BAG40888.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda] Length = 263 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 11/247 (4%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK+ L R++ PL K S +Q +Y+ +VLR K D I +FN +GE+L+ I + Sbjct: 1 MKLK-KLHRIYSSIPLSKAGTIKLSREQTNYIINVLRCKNNDKIRVFNELNGEYLAIIHH 59 Query: 61 VG-KSIRFKVEYQS-----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 K + ++ Q+ S + IK R+ +I + + G+ I P+I+ Sbjct: 60 TNNKQVLLQIINQTKVVEKEVDENNSPLVLAQCIIKPERMARVIDMATQAGITNIVPIIS 119 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 Y+Q+ +N+++ I + Q + LT+P + P TL L + C + Sbjct: 120 EYSQHLKFNIEKYNKIIIESCRQSERLTMPILSSPVTLSHFLSQSNSGC--ILCANEQER 177 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAA 233 + + A + + +ILIGPEGG+ +++ L + +S+G +LRS+TAA+ Sbjct: 178 IQQIHHIPA-SILSKASILIGPEGGFSEQDQSILRKAGGLIKSISIGRNVLRSETAAIYL 236 Query: 234 MALVQAI 240 ++ +Q + Sbjct: 237 LSQLQLL 243 >gi|160901468|ref|YP_001567050.1| 16S ribosomal RNA methyltransferase RsmE [Delftia acidovorans SPH-1] gi|160367052|gb|ABX38665.1| protein of unknown function DUF558 [Delftia acidovorans SPH-1] Length = 250 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 20/237 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60 + R L + VLR++ GD I LF G+ GE+ + + Sbjct: 1 MPRFHCPIALRSGADIDLPPGAARH-VQVLRLQPGDGITLFEGRAGEGFSGGEFEATVLR 59 Query: 61 VGKS-IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 +G+S + ++ + + V + R+D++++K+ E+G +I P++ + Sbjct: 60 MGRSDVAVRIGAHHAVEREPLRPVHLLAGITANERMDWLVEKAAELGAASITPLVAERSV 119 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK----NWDHNCQIVFA 168 + + + +SA EQC +P ++ P LE L+ + Sbjct: 120 LKLKGERAEKKLAHWQAVAVSACEQCTRNRVPPLHTPADLEDWLESGAQQLPPGTLRLLL 179 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 G+ E L A A V L GPEGG E+ + FV P++LGPR+LR Sbjct: 180 SLGEGTRPLGEVLDATAEDAPVVFLSGPEGGLSPAEEALARAQGFV-PVTLGPRVLR 235 >gi|332712271|ref|ZP_08432199.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L] gi|332349077|gb|EGJ28689.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L] Length = 259 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 18/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++RL + + Q HYL VLR+++GD + +G+ G ++S++ G + Sbjct: 1 MQRLVISPAQRQDQGIVLTDAQQHYLIRVLRLRKGDRFIAMDGEGGWYVSELE--GDLTQ 58 Query: 67 FKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123 K+ QT+ V + + K + + + + E+G+ I P+ + T + Sbjct: 59 AKIVASEHIQTELPKQVTLMAAMPKGSGFEQICLMATELGVTRIVPLKSDRTLLNPSPQK 118 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEF---LLKNWDHNCQIVFADETCGSENSLEK 180 + R R T AAEQ + +P I P L + + I A + Sbjct: 119 LQRWRRITQEAAEQSEREVVPKILEPVDFSDSLQLPETREAYRYICVARGKAPHLLNCLL 178 Query: 181 L---------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 A P + I GPEGG+ ++E E + F+ +SLG RILR+ TA + Sbjct: 179 DLRLGFDTGQTDPAQHPGIVIATGPEGGWTTQELEQATAAGFI-AVSLGSRILRAITAPI 237 Query: 232 AAMALVQAI 240 ++++V A+ Sbjct: 238 VSLSIVAAV 246 >gi|196248968|ref|ZP_03147668.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16] gi|196211844|gb|EDY06603.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16] Length = 282 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 12/224 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV SGD H++A V+RMK GD I + +I + Sbjct: 1 MQRYFVSDRERQGENVVISGDDAHHIARVMRMKPGDAIACVFPDGRTAVCQIEQIANEQV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 Q + + ++ V+ + K + + +IQK E+G P + + + Sbjct: 61 CARIVQWKEEGRELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175 ++R + AAEQ + LP + P +L+ L+ + +FA E G Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRH 180 Query: 176 NSLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 SL L A + ++ + GPEGG+ EE E L F S Sbjct: 181 ASLPALLADLQPGSSLLAVFGPEGGFSREEAEQLKQSGFCRAAS 224 >gi|294793688|ref|ZP_06758825.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44] gi|294455258|gb|EFG23630.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44] Length = 252 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 14/249 (5%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISY 60 +K++F+ PL + D H++ HV R I + + + G + Sbjct: 6 ARKTMKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEV 63 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 GK + K+ + S +K +L++++QK+ E+ + I V T Sbjct: 64 DGK-AQAKLIEYVEGNLASYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAK 122 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + ++R + AA+QC LP + TL L ++V + G Sbjct: 123 YDEKKLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQ 182 Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ++ L+ LH+ + +V I IGPEGGY +E + +SLG ILR++TAA+ Sbjct: 183 TIKDVLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIG 241 Query: 233 AMALVQAIC 241 ++A+++ Sbjct: 242 SLAMIRYEL 250 >gi|303229102|ref|ZP_07315904.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-134-V-Col7a] gi|302516226|gb|EFL58166.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-134-V-Col7a] Length = 243 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 18/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 +K++F+ PL D H++ HV R I + G D I + I Sbjct: 1 MKKIFIPTPL--DESIVLPKDVTHHILHVFRHNIEKPITVT-GSDN--RCGIYQINDEIN 55 Query: 66 ---RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + S T + S +K +L++++QK+ E+ + + V T Sbjct: 56 GLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYLVPTSNCVAKYD 115 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--S 174 + R + A++QC LP + L +L + ++V + G Sbjct: 116 AKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVGEPLSNVLDIESESLKLVAYENEAGYTI 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +++L+ +++ + ++ I IGPEGG+ +E + ++LG ILR++TAA+AA+ Sbjct: 176 KDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGG-QSVTLGHTILRAETAAIAAL 234 Query: 235 ALVQAIC 241 ++V Sbjct: 235 SMVHYEL 241 >gi|219848626|ref|YP_002463059.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aggregans DSM 9485] gi|219542885|gb|ACL24623.1| protein of unknown function DUF558 [Chloroflexus aggregans DSM 9485] Length = 251 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 9/240 (3%) Query: 9 RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66 R FVD + H VLR+ GD +LL +GK + + + + + Sbjct: 12 RFFVDPVWLRGDEILIDDPSLLHQWTRVLRLTAGDRVLLLDGKGMAAVVQFTAIDRRRAQ 71 Query: 67 -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--- 122 + + + + I+ R ++ +QK+VE+G I PV + + Sbjct: 72 GYVLTRCHAGGELAVVIDLYLALIRPERFEWALQKAVELGARRIIPVAFARSLSGDRIDT 131 Query: 123 -NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + AAEQ LP + P + + DE + + + Sbjct: 132 HRLMRWQRIATEAAEQSGRGRLPEVSAPQPFSAAVVAGGRADLALMLDE-QAEHHLRDIV 190 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +AI+ GPEGG E+ FV +SLGPRILR++TA +AA+A++Q Sbjct: 191 TSPTSLRQIAIISGPEGGIDPRERRAAIDHGFV-AVSLGPRILRAETAPLAALAMLQYAL 249 >gi|294791827|ref|ZP_06756975.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27] gi|294457057|gb|EFG25419.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27] Length = 252 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 14/249 (5%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISY 60 +K++F+ PL + D H++ HV R +I + + + G + Sbjct: 6 ARKTMKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKSITVTGSDNRCGTYQITAEV 63 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117 GK + K+ + S +K +L++++QK+ E+ + I V T Sbjct: 64 DGK-AQAKLIEYVEGNLASYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAK 122 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + ++R + AA+QC LP + TL L ++V + G Sbjct: 123 YDEKKLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQ 182 Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 ++ L+ LH+ + +V I IGPEGGY +E + +SLG ILR++TAA+ Sbjct: 183 TIKDVLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIG 241 Query: 233 AMALVQAIC 241 ++A+++ Sbjct: 242 SLAMIRYEL 250 >gi|323340773|ref|ZP_08081025.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091896|gb|EFZ34516.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 250 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 16/249 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---- 62 ++R F + S D Y + V+RMK G L + ++ + Sbjct: 1 MQRYFSEQNFS-GNTLNLSEDVYKHAVVVMRMKAGSKFELVTPDKVVHVMELVTIDSAKK 59 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +++ + E + + K ++ D ++ K+ E+G+ I ++ Sbjct: 60 QAVAHECERFEHQVELPVEATIVCGLPKNDKTDLIVMKATELGVSKIVFFAGDWSVARWA 119 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q ++R++ SAAEQ T+P + LE LL + D + + E Sbjct: 120 KQKQAKKLERLQKIAKSAAEQSHRTTIPEVSYLDGLEDLLPDEDTVGLCAYEESAKAGEK 179 Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + + V + GPEGG +E E L F LGPRI+R++TA + Sbjct: 180 GMLVKVFDVLKTGEKKKVTAVFGPEGGISPKEVELLKKKGFSFA-GLGPRIMRAETAPLY 238 Query: 233 AMALVQAIC 241 ++ + Sbjct: 239 FLSALSFAL 247 >gi|306826580|ref|ZP_07459887.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431218|gb|EFM34220.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 249 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLADKAEVILVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIETLPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|326520946|dbj|BAJ92836.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 347 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 57/249 (22%), Positives = 109/249 (43%), Gaps = 11/249 (4%) Query: 2 KIHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L R P + GD++ ++ VLR+ D + LF+G G I Sbjct: 90 RARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQK 149 Query: 61 VGKSIR-FKVEYQSRSQTKQSDVQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRY 116 V K+ ++ +R Q ++F+ +K R D++I+K E+G ++ P++T Sbjct: 150 VDKNGSDVELLENARLIAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTER 209 Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +DR++ ++A +QC + + PP + L + A + + Sbjct: 210 CHTIAENRVDRLQRLVLAAVKQCQRVHDMSLKPPIQIHDLPLAVSQSKLAFLA--SAEAP 267 Query: 176 NSLEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L L + + ++IGPEG + EE + L + V P+ LGP LR +TA ++ + Sbjct: 268 PVLSVLPKCGSEEESGLLIIGPEGDFTEEEVKVLKAAGAV-PVGLGPCRLRVETATISLL 326 Query: 235 ALVQAICGD 243 + + + D Sbjct: 327 SALM-LWSD 334 >gi|225429203|ref|XP_002271957.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 287 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F + P + GD++ ++ VLR+ D + LFNGK G I+ + ++ Sbjct: 42 LPRFFSEVLPPSKGGIVRVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTG 101 Query: 66 RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120 + + Q+ + V F +K R D++++K E+G ++ P++T + + + Sbjct: 102 LDFIALEDPKLVLPQSSRWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSIS 161 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR++ ++AA+QC L + PPTT++ LL + + A + Sbjct: 162 ENRVDRLQRVILAAAKQCQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSV 219 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + ++IGPEG + +E + T + LGP LR +TA +A +A + + Sbjct: 220 LTSSRRESTGLMIIGPEGDFTEKELNMMREAG-ATAVGLGPHRLRVETATIALLATLM-L 277 Query: 241 CGD 243 D Sbjct: 278 WSD 280 >gi|302037061|ref|YP_003797383.1| putative Ribosomal RNA small subunit methyltransferase E [Candidatus Nitrospira defluvii] gi|300605125|emb|CBK41458.1| putative Ribosomal RNA small subunit methyltransferase E [Candidatus Nitrospira defluvii] Length = 245 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 10/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + F+ +TQ +GD H+L LR+K G+++ L + + ++ V + Sbjct: 1 MPAFFISSSDIRETQITLTGDLCHHLRASLRVKSGEHLWLTDEHRRRYRVRVLQVAQQAV 60 Query: 67 FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + R + + +K + +D+++QK+ E+G+ I P+++R+ T Sbjct: 61 TAEILEQRQGPVESSPPLLLAQAMLKGDHMDWVVQKASELGVRTILPLVSRHGVVRPQTD 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + AA+Q + P + P C ++ A+ + Sbjct: 121 RIAAQVARWQRIATEAAQQSEQWQPPQVLEPLESRRFFSTHTATCSLLLAERREALALAS 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 L + + ++IGPEGG+ EE + +SLG ILR+DTAAV A+++VQ Sbjct: 181 VPLPRLPSEQ-ICVIIGPEGGWAEEEITLALAQ-HCQAVSLGECILRADTAAVTALSIVQ 238 Query: 239 AICGD 243 + G Sbjct: 239 SRLGR 243 >gi|288925123|ref|ZP_06419059.1| RNA methyltransferase, RsmE family [Prevotella buccae D17] gi|288338313|gb|EFC76663.1| RNA methyltransferase, RsmE family [Prevotella buccae D17] Length = 244 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 104/236 (44%), Gaps = 11/236 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68 +V Q + ++ + VLR+K GD + L +G + ++++ V GK ++ Sbjct: 7 FYVPDAAR---QSELPEEEAGHALRVLRLKAGDEMFLMDGVGTFFRAEVTVVAGKHCMYE 63 Query: 69 VEYQ-SRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ + + T + + +P K R+++M++K+ E+G I + ++++ DR Sbjct: 64 IKDRFPQHPTWRGHIHLAIAPTKMMERMEWMVEKATEVGFDEISFLGCKFSERKVLRADR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAI- 184 V +SA +Q P + + + I E ++ ++ Sbjct: 124 VEKIVVSAMKQSRKAWKPVVNTMCSFGEFMAVEHPGRKYICHCYEEFPKKDFFSEIQETI 183 Query: 185 --AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ +L+GPEG + +E + + + +SLG LR++TA ++A+ + Sbjct: 184 DYEDNEDILVLVGPEGDFSVDEVQLALEKGYES-VSLGRSRLRTETAGLSAVMMAN 238 >gi|50915045|ref|YP_061017.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS10394] gi|50904119|gb|AAT87834.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394] Length = 249 Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ + D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKRVTIT-DKDTIKHMFQVMRLTDEAEVILVFDDGVKYLAKVTSSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V + ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTVASGFPRGDKLDTIAQKVTELGANALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFVAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|209523429|ref|ZP_03271984.1| protein of unknown function DUF558 [Arthrospira maxima CS-328] gi|209496171|gb|EDZ96471.1| protein of unknown function DUF558 [Arthrospira maxima CS-328] Length = 252 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 18/252 (7%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ L+R+ + Q + Q HYL VLR++ GD ++ +G+ G WL+ I Sbjct: 1 MR---ELQRIAIASEQFHDQQVDLTAGQQHYLGRVLRLQPGDRFIILDGRGGWWLA-IWK 56 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119 G++ VE + V S K + + +++ + E+G+ + P+++ T Sbjct: 57 GGQNATV-VEPIRINNELPIPVTLWVSMPKGSGFEEIVRCTTELGVSRLVPIMSARTVVV 115 Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175 + + R R AAEQ + LP I P +++ L + Sbjct: 116 PSPQKLARWRRIATEAAEQSERQILPEITDPLSIQQAWETLSDQGEEVDKYICVARGDFP 175 Query: 176 NSLEKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L L A ++ + IGPEGG+ + E E + F P+SLG RILRS T Sbjct: 176 HLLNCLLAARTGQGKGYVYNSLLLAIGPEGGWTTPEVEEAINRRF-QPVSLGSRILRSVT 234 Query: 229 AAVAAMALVQAI 240 A + A++LV A+ Sbjct: 235 APMVALSLVAAV 246 >gi|300112836|ref|YP_003759411.1| hypothetical protein Nwat_0111 [Nitrosococcus watsonii C-113] gi|299538773|gb|ADJ27090.1| protein of unknown function DUF558 [Nitrosococcus watsonii C-113] Length = 243 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 13/228 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + RL+ L I + Y+ VLR++ G + LF+G+ E+ + + V K Sbjct: 2 RVPRLYFPLSLSIGSSVSLDERTLQYVIRVLRLRLGAQLRLFDGRGAEYQAVLEMVEKRA 61 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 R ++ E + + R+DY +QK+VE+G+ I P++T + Sbjct: 62 ARVRILERIEHYVESPLHIVLGQGISRGERMDYALQKAVELGVSHIVPLLTERSSVNFST 121 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + ISA EQC +P + P +L L + DH V D SE Sbjct: 122 GRAEKRLRHWQGVIISACEQCGRNYIPPVEIPRSLADFLGD-DHGGLAVLLD--PRSERP 178 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 L+ L + + +LIGPEGG + E + F+ + LGPRILR Sbjct: 179 LKALP-LPLDNRLILLIGPEGGLNEIEIKQAQQADFI-GVRLGPRILR 224 >gi|315608164|ref|ZP_07883156.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574] gi|315250133|gb|EFU30130.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574] Length = 244 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 103/236 (43%), Gaps = 11/236 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK 68 +V Q + ++ + VLR+K GD + L +G + ++++ GK ++ Sbjct: 7 FYVPDAAR---QSELPEEEAGHALRVLRLKAGDEMFLMDGVGTFFRAEVTVAAGKHCMYE 63 Query: 69 VEYQ-SRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 ++ + + T + + +P K R+++M++K+ E+G I + ++++ DR Sbjct: 64 IKDRFPQHPTWRGHIHLAIAPTKMMERMEWMVEKATEVGFDEISFLGCKFSERKVLRADR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAI- 184 V +SA +Q P + + + I E ++ ++ Sbjct: 124 VEKIVVSAMKQSRKAWKPVVNTMCSFGEFMAVEHPGRKYICHCYEEFPKKDFFSEIQETI 183 Query: 185 --AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ +L+GPEG + +E + + + +SLG LR++TA ++A+ + Sbjct: 184 DYEDNEDILVLVGPEGDFSVDEVQLALEKGYES-VSLGRSRLRTETAGLSAVMMAN 238 >gi|229220790|ref|YP_153918.2| hypothetical protein AM686 [Anaplasma marginale str. St. Maries] Length = 243 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 9 RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL+ + + + + Q HY+ V+R K GD +LLF+G GEWL ++S + K + Sbjct: 11 RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVE 70 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E R + + F+ +K + +++++ EMG+ +P+ T Y+ + + Sbjct: 71 VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRK 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R + + A+EQC +P + P L + + + Q V DET G + E L Sbjct: 131 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 190 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V +++GPEGG+ +EE + F +SLG RIL+ DTA V A+A V Sbjct: 191 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 237 >gi|254995038|ref|ZP_05277228.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str. Mississippi] Length = 244 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 9 RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL+ + + + + Q HY+ V+R K GD +LLF+G GEWL ++S + K + Sbjct: 12 RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVE 71 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E R + + F+ +K + +++++ EMG+ +P+ T Y+ + + Sbjct: 72 VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRK 131 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R + + A+EQC +P + P L + + + Q V DET G + E L Sbjct: 132 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 191 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V +++GPEGG+ +EE + F +SLG RIL+ DTA V A+A V Sbjct: 192 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 238 >gi|15675777|ref|NP_269951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes M1 GAS] gi|71911507|ref|YP_283057.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS5005] gi|13623001|gb|AAK34672.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|71854289|gb|AAZ52312.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005] Length = 249 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLADEAEVVLVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|51891646|ref|YP_074337.1| hypothetical protein STH508 [Symbiobacterium thermophilum IAM 14863] gi|51855335|dbj|BAD39493.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 243 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 13/245 (5%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R F++ + H+L VLR G ++ +G + + V + Sbjct: 3 PRFFLER--VEGDEVVLPRADSHHLLRVLRAGPGTPFVVLSG-GMAYDCVLHRVDDGLAR 59 Query: 68 --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR------YTQN 119 + + + K +++ ++Q E+G+ V + Sbjct: 60 GRIRAAEPAAGEPAIRITLFQGLAKGEKMELVLQHGTELGIAEFVAVAAARSVVRLDERK 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R + AAEQ +P + PP T + + + A E G E Sbjct: 120 AAQRTERWQRIAREAAEQSRRGAVPTVAPPHTWKEAVARIPEFDLALVAWE-GGGEPLRA 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L A ++A+ IGPEGG +EE E V P++LGPRILR++TA +AA+A + Sbjct: 179 ALEARPEARDIAVFIGPEGGLTAEEVELARQAGAV-PVTLGPRILRTETAPLAAVAAILY 237 Query: 240 ICGDW 244 G+W Sbjct: 238 ARGEW 242 >gi|229586410|ref|YP_002844911.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia africae ESF-5] gi|228021460|gb|ACP53168.1| Unknown [Rickettsia africae ESF-5] Length = 246 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56 Query: 60 YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 +GK S+R K Q + +S + + IK ++L I + ++G+ I P+ITR+ Sbjct: 57 DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ + ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 173 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|167847329|ref|ZP_02472837.1| hypothetical protein BpseB_18782 [Burkholderia pseudomallei B7210] Length = 233 Score = 205 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 17/221 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLS 135 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRLLLSPRA 195 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212 L A +V +LIGPEGG +E++ + Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARG 233 >gi|94995181|ref|YP_603279.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS10750] gi|94548689|gb|ABF38735.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750] Length = 249 Score = 205 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLADEAEVILVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E +V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVEVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIGYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + V + LGPRI+R++TA + A++ Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAG-VIKVGLGPRIMRAETAPLYALSA 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|241668207|ref|ZP_04755785.1| 16S rRNA m3U1498 methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876742|ref|ZP_05249452.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842763|gb|EET21177.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 241 Score = 205 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 15/240 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVG-KSIRF 67 F D T+ SG+ Y+Y +VLR+K+ D I LFN DG + ++I + KSI Sbjct: 7 FFADIS-VKTTELSISGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKTQIIDINNKSILL 65 Query: 68 KVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120 +V + + V + IK ++++QK+ E+G+ I P+IT YT Sbjct: 66 EVIEKKEIHNENKYIVNIYQAIIKNENFEFIVQKATELGVNNIYPIITEYTNHKFDKKGF 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R I+AAEQC + +P I+ P + + + + I + EN Sbjct: 126 DKKLERWNKIAIAAAEQCGRVFIPKIHYPIEINS-IHLSNSHINIALCPYSNTPENFENL 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + I IGPEGG+ ++E E + F T ++LG RIL+++TA + +A++ + Sbjct: 185 IKTHDKFN---IFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPINILAIINFV 240 >gi|19746890|ref|NP_608026.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes MGAS8232] gi|19749135|gb|AAL98525.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 249 Score = 205 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ K D ++ V+R+ + ++L ++L+K++ Sbjct: 1 MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLADKAEVVLVFDDGVKYLAKVTNSMAHEL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E V K ++LD + QK E+G A+ V+ + Sbjct: 60 EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D++ + AAEQ +P ++ LK+ I A E L Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179 Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + + GPEGG E + + + LGPRI+R++TA + A+++ Sbjct: 180 LAREVKEVKLGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSV 238 Query: 237 VQAIC 241 + Sbjct: 239 LSYAL 243 >gi|15619261|gb|AAL02748.1| unknown [Rickettsia conorii str. Malish 7] Length = 257 Score = 205 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 14 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 69 Query: 60 YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 +GK S+R K Q + +S + + IK ++L I + ++G+ I P+ITR+ Sbjct: 70 DIGKNNLSVRLKE--QLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 127 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 128 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 185 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ + ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 186 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234 >gi|282850175|ref|ZP_06259554.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745] gi|282579668|gb|EFB85072.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745] Length = 243 Score = 205 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R I + + + G + GK Sbjct: 1 MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEVDGK- 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + K+ + S +K +L++++QK+ E+ + I V T + Sbjct: 58 AQAKLIEYVEGNLASYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 117 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + AA+QC LP + TL L ++V + G ++ Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ LH+ + +V I IGPEGGY +E + +SLG ILR++TAA+ ++A+ Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIGSLAM 236 Query: 237 VQAIC 241 ++ Sbjct: 237 IRYEL 241 >gi|34580836|ref|ZP_00142316.1| hypothetical protein [Rickettsia sibirica 246] gi|28262221|gb|EAA25725.1| unknown [Rickettsia sibirica 246] Length = 244 Score = 205 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56 Query: 60 YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 +GK S+R K Q + +S + + IK ++L I + ++G+ I P+ITR+ Sbjct: 57 DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ + ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 173 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|222475209|ref|YP_002563625.1| hypothetical protein AMF_516 [Anaplasma marginale str. Florida] gi|56388076|gb|AAV86663.1| hypothetical protein AM686 [Anaplasma marginale str. St. Maries] gi|222419346|gb|ACM49369.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 260 Score = 205 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 9 RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 RL+ + + + + Q HY+ V+R K GD +LLF+G GEWL ++S + K + Sbjct: 28 RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVE 87 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E R + + F+ +K + +++++ EMG+ +P+ T Y+ + + Sbjct: 88 VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRK 147 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R + + A+EQC +P + P L + + + Q V DET G + E L Sbjct: 148 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 207 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V +++GPEGG+ +EE + F +SLG RIL+ DTA V A+A V Sbjct: 208 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 254 >gi|302346384|ref|YP_003814682.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC 25845] gi|302150957|gb|ADK97218.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC 25845] Length = 244 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 105/238 (44%), Gaps = 11/238 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F ++T+ ++ + VLR+KEGD + L +G+ + ++++ V Sbjct: 5 RYFYVPNAAVETE--LPAEEAVHAIRVLRLKEGDEMFLMDGEGCFYKAEVALVSSKKCLY 62 Query: 69 VEYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 ++ Q + +P K R+++M +K+ E+G I + ++++ +D Sbjct: 63 TIKETLKQEPVWRGKIHLAIAPTKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRVD 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEK 180 R+ ISA +Q P + P T ++N +N + ++ + Sbjct: 123 RIEKIVISAVKQSRKGWKPVVNPMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQ 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + ++ +L+GPEG + +E F + ++LG LR++TA ++A+ + Q Sbjct: 183 EEQPSSAEDITVLVGPEGDFSIDEVSFALEHGFES-VTLGNSRLRTETAGLSAVMMSQ 239 >gi|253752746|ref|YP_003025887.1| hypothetical protein SSUSC84_1911 [Streptococcus suis SC84] gi|253754571|ref|YP_003027712.1| hypothetical protein SSU1893 [Streptococcus suis P1/7] gi|253756504|ref|YP_003029644.1| hypothetical protein SSUBM407_1958 [Streptococcus suis BM407] gi|251817035|emb|CAZ52687.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818968|emb|CAZ56815.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820817|emb|CAR47583.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|319759164|gb|ADV71106.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis JS14] Length = 248 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ + D ++ V+R++ GD I+L + L+++ Sbjct: 1 MQQYFVNGRAPQGMFQISDKDTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQSQSV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + + V K ++L+++ QK+ E+GM A+ V+ + Sbjct: 61 EIIEELTDNVELPISVTIAMGFPKGDKLEFVAQKATELGMSALWAFPADWSVVKWDGKKL 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----N 176 +++ AAEQ +P + L QI+ A E E N Sbjct: 121 AKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEGEQAN 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ L + +V +++GPEGG EE V LGPRILR++TA + A++ Sbjct: 181 LVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALST 239 Query: 237 VQAIC 241 + Sbjct: 240 ISYAT 244 >gi|110598135|ref|ZP_01386413.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340267|gb|EAT58764.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 247 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 15/229 (6%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79 + D++H+LA VLR ++G IL+ +G ++IS VGK S+ ++ + Sbjct: 17 RIVIDSDEFHHLARVLRKQKGAVILVTDGNGIRCEARISEVGKSSLEAEILDHRLVGEPK 76 Query: 80 SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 + V S +K R ++ ++K+ E+G+ +I P+IT T + + R +T + Sbjct: 77 TGVTVALSMLKNPQRFEWFLEKATELGVSSIIPMITARTLAQPSKERVQGRLKRWKTIVL 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 SAA Q LP + P T + ++ +++ E +E Sbjct: 137 SAARQSKRYHLPALSEPLTFAQVSALEGYDLRLIP-YEASEEAPKVEF-----AGKKALF 190 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +IG EGG+ E E + F +SLG ILR++TA + A+ALV+ Sbjct: 191 MIGGEGGFTDSEVEKAKTAGFCE-ISLGRTILRAETAGIFAVALVRTRL 238 >gi|297736409|emb|CBI25132.3| unnamed protein product [Vitis vinifera] Length = 410 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F + P + GD++ ++ VLR+ D + LFNGK G I+ + ++ Sbjct: 165 LPRFFSEVLPPSKGGIVRVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTG 224 Query: 66 RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120 + + Q+ + V F +K R D++++K E+G ++ P++T + + + Sbjct: 225 LDFIALEDPKLVLPQSSRWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSIS 284 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR++ ++AA+QC L + PPTT++ LL + + A + Sbjct: 285 ENRVDRLQRVILAAAKQCQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSV 342 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + ++IGPEG + +E + T + LGP LR +TA +A +A + + Sbjct: 343 LTSSRRESTGLMIIGPEGDFTEKELNMMREAG-ATAVGLGPHRLRVETATIALLATLM-L 400 Query: 241 CGD 243 D Sbjct: 401 WSD 403 >gi|291515586|emb|CBK64796.1| RNA methyltransferase, RsmE family [Alistipes shahii WAL 8301] Length = 237 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 102/240 (42%), Gaps = 7/240 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + P + + ++ + VLR++ G I + +G+ + +I+ + Sbjct: 1 MQLFY--APDIVPPLHTLNEEESKHCIRVLRLQCGGRIHITDGRGNLFCCEITDDNPRRC 58 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 +V ++ + + +P K R ++ ++K+ E+G+ A+ P+ T +++ + Sbjct: 59 TVRVVSAETGFEKLPYALTMAVAPTKNSERFEWFLEKATEVGVTAVVPLETEHSERRVFK 118 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-H 182 +R +A +Q P ++P T + + + + S L Sbjct: 119 PERGEKVVTAALKQSLKAYRPVLHPLTPFREAVLSAPEGRKFIAHCAPAQSPAGKAYLAR 178 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 A+ + IGPEG + E + F ++LG + LR++TAA+AA+ + + G Sbjct: 179 ALRPGETATVFIGPEGDFSPGEIAFALANGFEE-ITLGRQRLRTETAALAAVVMASVVNG 237 >gi|327314423|ref|YP_004329860.1| RsmE family RNA methyltransferase [Prevotella denticola F0289] gi|326944161|gb|AEA20046.1| RNA methyltransferase, RsmE family [Prevotella denticola F0289] Length = 259 Score = 205 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 27/252 (10%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK 68 +V + + ++ + VLR+KEGD + L +G+ + +++ K + Sbjct: 7 FYVPNAAALN---ELPAEEAVHALRVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYT 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + R + +P K R+++M +K+ E+G I + R+++ DR Sbjct: 64 IRQTMRQKPAWSGRIHLAIAPTKDMGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------------- 173 + +SA +Q P + P ++ ++N + Sbjct: 124 IEKIVVSAVKQSRKGWKPLVNPMSSFSSFVENCPDKGRKFICHCYPEIPRTDFFTAITSA 183 Query: 174 ------SENSLEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 +N LE ++ +LIGPEG + EE + F + ++LG LR+ Sbjct: 184 LQPGIFLQNGLEAQKEHPSGAADITVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRT 242 Query: 227 DTAAVAAMALVQ 238 +TA ++A+ + Q Sbjct: 243 ETAGLSAVMMSQ 254 >gi|254415665|ref|ZP_05029424.1| conserved hypothetical protein TIGR00046, putative [Microcoleus chthonoplastes PCC 7420] gi|196177615|gb|EDX72620.1| conserved hypothetical protein TIGR00046, putative [Microcoleus chthonoplastes PCC 7420] Length = 295 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 107/284 (37%), Gaps = 50/284 (17%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +L+RL + Q + Q HYL VLR+ EGD + +G+ WLS++ + Sbjct: 9 NLQRLVISPTQRQNQQILLTESQQHYLVRVLRLTEGDRFIAMDGEGNWWLSEL-MANLTQ 67 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123 +E + I + K + + +I + E+G+ I P+ + T + Sbjct: 68 ATIIESIPIQTELPCAITLIAAMPKGSGFEDIISAATELGVTDIIPIKSDRTILNPSPRK 127 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS----ENSLE 179 ++R R AAEQ + +P I P +K + + G+ N L Sbjct: 128 LERWRRIAQEAAEQSERQIVPTIIDPLDFTSAIKQAIDSTTHCYICVARGNVPHLLNCLP 187 Query: 180 KLHAIAHIPN------------------------------------------VAILIGPE 197 KL I +AI GPE Sbjct: 188 KLEVIDPGDGQDKGDEGGFSTIRVTTNDNSETRPYIQNPVPDERSEGSKRSIIAIATGPE 247 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG+ +E E + F P+SLG RILR+ TA + A++L+ A Sbjct: 248 GGWTPQEIEQAIAAGF-QPVSLGHRILRAVTAPLMALSLIAASL 290 >gi|115455113|ref|NP_001051157.1| Os03g0729700 [Oryza sativa Japonica Group] gi|113549628|dbj|BAF13071.1| Os03g0729700 [Oryza sativa Japonica Group] Length = 330 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 10/248 (4%) Query: 2 KIHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L R P + + GD++ ++ VLR+ D + LF+G G I Sbjct: 77 RARGGLPRFHSPTLPSSKGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQK 136 Query: 61 VGKSIR-FKVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 V K K+ +R Q V F +K R D++++K E+G ++ P++T Sbjct: 137 VDKGGSDVKLLEDARLIAPDGIQWHVYAAFGTLKGGRADWLVEKCTELGACSVTPLLTER 196 Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +DR++ ++A +QC + + PP + L + A + S Sbjct: 197 CHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVVSQSKLAFVA--SAESP 254 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L + + +++GPEG + EE L + V P+ LGP LR +TA ++ ++ Sbjct: 255 PLLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAV-PVGLGPCRLRVETATISLLS 313 Query: 236 LVQAICGD 243 + + D Sbjct: 314 ALM-LWSD 320 >gi|229301334|ref|NP_359847.2| hypothetical protein RC0210 [Rickettsia conorii str. Malish 7] gi|39932538|sp|Q92J59|RSME_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase Length = 244 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56 Query: 60 YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 +GK S+R K Q + +S + + IK ++L I + ++G+ I P+ITR+ Sbjct: 57 DIGKNNLSVRLKE--QLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ + ++ I++GPEGG+ ++E E L S +SLG ILR Sbjct: 173 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221 >gi|329296976|ref|ZP_08254312.1| hypothetical protein Pstas_11162 [Plautia stali symbiont] Length = 209 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 14/213 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L + ++ D +++ VLRM G I LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEALMVNSEILLDEDAANHVDRVLRMSAGQQIELFDGSNLTFSAQITQADKKR 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 S+ ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 62 VKVKVLASQPDDRKSPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + + + I+A EQC +P I TLE D ++ S N+ Sbjct: 122 ERLAKKIQQRQKIAIAACEQCGRNRVPEIRAAMTLEAWCAEADDGLKLNLHPRASHSINT 181 Query: 178 LEKLHAIAHIPNVAILI-GPEGGYHSEEKETLH 209 L + + V +LI PEGG +EE Sbjct: 182 LPQ-----PVKRVRLLIDDPEGGLSAEEITMTA 209 >gi|225867798|ref|YP_002743746.1| hypothetical protein SZO_01840 [Streptococcus equi subsp. zooepidemicus] gi|225701074|emb|CAW97892.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 248 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ F+ + + + D ++ V+R+ + + ++L + L+++S Sbjct: 1 MQQYFIKG--RAEKIVQLTDKDTIKHMFQVMRLTDQEKLVLVFEDGIKRLARVSDSSAYE 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 ++ + +V K ++LD + QK+ E+G AI V+ ++ Sbjct: 59 VELIKELEENVEMPVEVTIASGFPKGDKLDVITQKTTELGAAAIWGFPADWSVVKWDSKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 +++ + AAEQ +P I LLK + A E Sbjct: 119 LAKKQEKLAKIALGAAEQSKRNRVPEIKLFDQKGELLKQLKQFDKCFVAYEEAAKAGERS 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L ++ V + GPEGG S+E + +T + LGPRI+R++TA + A++ Sbjct: 179 TLARELAGLSPGQKVLFIFGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALS 237 Query: 236 LVQAIC 241 V Sbjct: 238 AVSYAL 243 >gi|189424061|ref|YP_001951238.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter lovleyi SZ] gi|189420320|gb|ACD94718.1| protein of unknown function DUF558 [Geobacter lovleyi SZ] Length = 249 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 12/246 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--- 64 +R V G Q+H++A VLR++ GD ++L + + L I V + Sbjct: 5 RRFIVSSRSIRDGYASYDGPQHHHMARVLRLRSGDEVMLIDEQGRRHLGVIDQVTQEWTA 64 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +R ++ + I K +++ ++QK E+G+ + Sbjct: 65 VRLTETLEASQFPDAPAITVIQGLPKGEKIELVLQKGTELGVSEFSIFRADRSVPKLAGD 124 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R AA Q + P + + P+ + +++ + + Sbjct: 125 KLQGRIERWNRIVAEAARQSERFDQPTVAWHPSAAAAAAGAANAELKLLLWERGAPT-PL 183 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L + +AI IGPEGG+ E E F TP++LG RILR++TAA+A A+V Sbjct: 184 REVLEGMPRPARIAIAIGPEGGFEPGEAEAFSFWGF-TPVTLGERILRTETAALAMTAIV 242 Query: 238 QAICGD 243 Q GD Sbjct: 243 QYKWGD 248 >gi|148652720|ref|YP_001279813.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter sp. PRwf-1] gi|148571804|gb|ABQ93863.1| protein of unknown function DUF558 [Psychrobacter sp. PRwf-1] Length = 300 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 61/294 (20%) Query: 7 LKRLFVDFPLC------------IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW 54 ++R F + L + + + D YH+ VLR K G+ +F+G G+ Sbjct: 1 MRRFFYNSSLHHTASIEALHQRPLGDSLRLTDDIYHHWCRVLRAKVGEQSWIFDGLGGQS 60 Query: 55 LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV 112 L ++ + K + + + + + +R+DY IQK+ E+G I+ + Sbjct: 61 LVELESIDKKSATVKIIHQDTAENTCNYHSTIALVMSRGDRMDYAIQKATELGATTIQLL 120 Query: 113 ITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-------- 158 +++ + + + +SA+EQC + I P ++E L+ Sbjct: 121 TSQHGEVRLKANQVDKKLSHWQQVALSASEQCRLNRPTLILSPLSIEQWLQGEMGAVHHM 180 Query: 159 ----WDHN----------CQIVFADETCGSENSLEKLHAI------------------AH 186 +D + +V A + + +L+ I A Sbjct: 181 VQHLYDADYYQSYLQQPILPLVLAVPSQQEQQTLDVNAQITGHFASANIKGANPDSTAAC 240 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 +P ILIG EGG E + + ++ P LG R+LR++TA V A+A + I Sbjct: 241 LPRFDILIGAEGGLSEAEYQLARNTGYL-PWQLGNRVLRTETAPVVALATLMYI 293 >gi|269797946|ref|YP_003311846.1| hypothetical protein Vpar_0885 [Veillonella parvula DSM 2008] gi|269094575|gb|ACZ24566.1| protein of unknown function DUF558 [Veillonella parvula DSM 2008] Length = 243 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R I + + + G + GK+ Sbjct: 1 MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGIYQITAEVDGKA 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 +EY + + + S +K +L++++QK+ E+ + I V + +Y + Sbjct: 59 QAKLIEYVEENVASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTVNCVAKYDEK 117 Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 ++R + AA+QC LP + TL L ++V + G ++ Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRKHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L+ LH+ + +V I IGPEGGY +E + +SLG ILR++TAA+ ++A+ Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIGSLAM 236 Query: 237 VQAIC 241 +Q Sbjct: 237 IQYEL 241 >gi|317504916|ref|ZP_07962867.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606] gi|315663966|gb|EFV03682.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606] Length = 240 Score = 204 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 101/236 (42%), Gaps = 8/236 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 +V ++ + VLR++ GDN++L +GK + + ++ K ++ Sbjct: 7 FYVPNAATNNQ---LPEEEAGHALRVLRLQSGDNMVLMDGKGTFYHAIVTLASHKKCLYE 63 Query: 69 V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + E + +T S + +P K +R++++ +K E+G + + +++ DR Sbjct: 64 IQETLPQEKTWSSQIHLAIAPTKNIDRIEWLAEKVTEIGFDELSFLHCTFSERKMLRQDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185 + +SAA+Q +P + + + + + I ++ + + Sbjct: 124 IEKIVVSAAKQSRKAWMPKVNALESFKEFITTPREGRKFIAHCYTEIEKKDFFDAITNDD 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + +L+GPEG + +E + + ++LG LR++TA + A+ + Q Sbjct: 184 LATPITVLVGPEGDFSIDEVRLAMEQGYES-ITLGKSRLRTETAGLMAVTMAQIAL 238 >gi|281420413|ref|ZP_06251412.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205] gi|281405558|gb|EFB36238.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205] Length = 251 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 103/241 (42%), Gaps = 18/241 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRF 67 R F TQ + ++ + VLR++ GD + L +GK + +++S K + Sbjct: 5 RFFYVPDAA--TQTELPQEEATHALRVLRIQTGDELFLMDGKGVFYRAEVSLATNKRCIY 62 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 +V E + + + +P K +R+++M +K+ E+G I + ++++ +D Sbjct: 63 EVKEVMPQQPAWRGHIHLAIAPTKMMDRIEWMAEKATEIGFDEISFLNCKFSERKVIRID 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLH-- 182 R+ +SA +Q P + + + + + + E ++ ++ Sbjct: 123 RIDKIVVSAVKQSHKAWKPVVNELQNFKDFITAPRNGRKFICHCYEEIEKKDFFAEISKS 182 Query: 183 ---------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 A ++ +L+GPEG + +E + + +SLG LR++TA + A Sbjct: 183 CPADDSAGAAQEGTDDITVLVGPEGDFSIDEVRLALENGYES-VSLGTSRLRTETAGLVA 241 Query: 234 M 234 + Sbjct: 242 V 242 >gi|22299289|ref|NP_682536.1| hypothetical protein tlr1746 [Thermosynechococcus elongatus BP-1] gi|22295472|dbj|BAC09298.1| tlr1746 [Thermosynechococcus elongatus BP-1] Length = 270 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 10/233 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +RL V + + +Q HYL HVLR+K GD + + +G+ WL +I GK+++ Sbjct: 33 QRLIVQGRQILDQCVTLTAEQQHYLYHVLRLKVGDELWILDGQGQRWLGQIQ--GKTVKL 90 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD 125 + R +++ + +K + ++Q++ E+G+ I P+ T + Q + Sbjct: 91 -LRPDCRETELSTEIILCLALLKAANFEQVLQQATELGVKRIVPIQTARSLLQPSINKYQ 149 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R + AAEQ + L +P + P ++ ++ A E + L + Sbjct: 150 RWQRILQEAAEQSERLYVPALSDPLSVAEMVSLTPKGYIASLA----APELLWDCLPQMN 205 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + IGPEGG+ + E E + + + +SLG R LR+ TAA+A++++V Sbjct: 206 LSEPIYLAIGPEGGWTASELEQVLAAGW-QAVSLGRRTLRAVTAAIASLSVVS 257 >gi|319940233|ref|ZP_08014585.1| YqeU [Streptococcus anginosus 1_2_62CV] gi|319810535|gb|EFW06871.1| YqeU [Streptococcus anginosus 1_2_62CV] Length = 246 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 24/251 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ D ++ V+R+ E D ++L + L+++S + + Sbjct: 1 MQQYFVNG-QVENPVIIRDKDTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 VE + V K ++L+++ QK+ E+G AI + ++ + + Sbjct: 60 NLVEELPDNAELPIHVTVASGFPKGDKLEWVAQKTTELGAAAIWAFPSDWS------VAK 113 Query: 127 V------------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + AAEQ +P + L ++ A E Sbjct: 114 WDGKKLAKKADKLEKIVLGAAEQSKRNLIPEVRLFEKKVDFLDCLSQFDCVIVAYEESAK 173 Query: 175 EN----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E ++ + + + + GPEGG E TL + LGPRILR++TA Sbjct: 174 EGESAALVKAVTGLKKGSRILFVFGPEGGLSPAEIATLEEAGAILA-GLGPRILRTETAP 232 Query: 231 VAAMALVQAIC 241 + A++ V + Sbjct: 233 LYALSAVSVLT 243 >gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 [Thermobispora bispora DSM 43833] gi|296091922|gb|ADG87874.1| protein of unknown function DUF558 [Thermobispora bispora DSM 43833] Length = 246 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 8/242 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFK 68 D + SG + H+ A V R++ G+ + + +G ++ GK + + Sbjct: 6 FLSDAAGSAEDHIVLSGPEGHHAATVRRLRPGERVDITDGAGRVAECVVAETGKDVLTAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V + ++ + + + + K +R + ++ E G+ I P Sbjct: 66 VLRRFHAEPPRPRLIVVQALAKGDRGELAVEMMTEAGVDVIVPWAASRCVVQWKGDRAAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R R+ AA+Q LP + + + + V E S Sbjct: 126 ALARWRSTAREAAKQSRRFHLPEVTEQASTAQVAELISGAELAVVLHEEAERPLSGITPP 185 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 ++ +++GPEGG EE L V P LGP +LR+ TA VAA A++ A CG Sbjct: 186 RGPSAGDIVVVVGPEGGITEEELARLSEAGAV-PALLGPTVLRTSTAGVAAAAVLFARCG 244 Query: 243 DW 244 W Sbjct: 245 RW 246 >gi|68171492|ref|ZP_00544876.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str. Sapulpa] gi|88658073|ref|YP_507353.1| hypothetical protein ECH_0540 [Ehrlichia chaffeensis str. Arkansas] gi|67999098|gb|EAM85765.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str. Sapulpa] gi|88599530|gb|ABD44999.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 241 Score = 204 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+VD L + HY+ HV+R + D + LFNG+DGEW+ +I + + + + Sbjct: 11 RLYVDCTLSKSSIVILDNIASHYICHVMRAAKLDEVKLFNGRDGEWIGEIFELSSNTKIR 70 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V R Q + S +K L +I+++ EMG+ I+P+ T++ ++ N+ + + Sbjct: 71 VNELIRRQYVPKSLTLCLSIVKNTALQNVIRQATEMGVTFIQPIYTQHIATSNINLSKCK 130 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + I AAEQC L +P I P L + + V DET E L Sbjct: 131 KWAIEAAEQCGRLDIPDISFPIDFIDLKQLKTDDNNFVICDETGKGHPPSEVL---KGKN 187 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 NV I+IGPEGG+ ++E F LSLG ILR DTA V+A+A V+ G Sbjct: 188 NVHIIIGPEGGFSNDELSFA--YSFCDGLSLGTTILRVDTAVVSALAYVKEYYG 239 >gi|313893412|ref|ZP_07826984.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158 str. F0412] gi|313442053|gb|EFR60473.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158 str. F0412] Length = 243 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R I + + + G + V Sbjct: 1 MKKIFIPTPL--DEIIQLPKDVTHHVLHVFRHNMEKPITVTGSDNRCGIYQIT-EEVDGL 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + K+ S + S +K +L++++QK+ E+ + I V T + Sbjct: 58 AQAKLIEYVESDASSYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVSTANCVAKYDDK 117 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 + R + AA+QC LP + L +L D ++V + G + Sbjct: 118 KLQSKVSRWEKIMLEAAQQCGRNQLPTLVVGEKLSQVLAIEDDAFKLVAYENEEGHTIKI 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +LE +H+ +I ++ I IGPEGGY +E + +SLG ILR++TAA+ ++A+ Sbjct: 178 ALESIHSNQNITDILICIGPEGGYQEKEINAIIESGG-KSVSLGNTILRAETAAIGSLAM 236 Query: 237 VQAIC 241 +Q Sbjct: 237 IQYEL 241 >gi|116492884|ref|YP_804619.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745] gi|116103034|gb|ABJ68177.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745] Length = 245 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 19/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV PL I+ + + S + H+L V+R G ++ + + +++++ G Sbjct: 1 MQRYFVKQPLKIQAELQLSKEDSHHLIRVMRTDIGQDVEVVDLDGKVFIAEVLKSGSIAT 60 Query: 67 FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119 + E ++S D+ K ++ + +I++ EMG +RY+ Sbjct: 61 LRTKEDITKSVELPVDITIACGISKGDKNEQIIKRGTEMGAKHFIFFESRYSVARWSEPK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETC---G 173 + R+R AAEQ +P FI P E +++ ++V +E+ Sbjct: 121 VEKKLKRLREIAKGAAEQSHRQLIPTVVFIKAPALFETTIEH-----RMVAYEESAKQDE 175 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 N L + + + GPEGG+ EE + FV LGPRILR++TA + Sbjct: 176 HANFKSLLLQLKAGDQLLAVFGPEGGFAEEEIQEFTEHQFVLA-GLGPRILRAETAPMYL 234 Query: 234 MALVQAIC 241 ++ V Sbjct: 235 LSAVSYQF 242 >gi|326693043|ref|ZP_08230048.1| hypothetical protein LargK3_04782 [Leuconostoc argentinum KCTC 3773] Length = 245 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P+ A D + + VLR + G + + ++ + + Sbjct: 1 MQRYFLKQPIADDLVLTADQDVFKHFGKVLRARVGSQAEFVSQDQEVVVGEVVAITPTEM 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 V + + V I SP+K +R D+ +QK+ E+G+ I + + + Sbjct: 61 TLKVVSRLTENVELPVQVTVIVSPLKNDRSDWFVQKATELGVHRIIFTTMTRTVADWRKQ 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 R+ +AAEQ L +P I + +L + IV +E+ Sbjct: 121 QLKKATRLEKIAQAAAEQSHRLMIPTID-FLSWSEVL-SLPKQAGIVAWEESAREGEVGT 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + + +A++ GPEGG ++E L F P LGPRILR++TA + A++ Sbjct: 179 LVQVVKPLPTGAELALVFGPEGGLTADEVAALSEHGF-KPAGLGPRILRAETAPLYALSA 237 Query: 237 VQAI 240 + + Sbjct: 238 ISVL 241 >gi|310779511|ref|YP_003967844.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926] gi|309748834|gb|ADO83496.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926] Length = 237 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 7/231 (3%) Query: 11 FVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 FV+ + K + ++L +V RMKEGD + + +G+ E+ I + K Sbjct: 5 FVEKENISENIIKITEKADVNHLKNVFRMKEGDQLRVVDGE-YEYFCTIVILEKKEITAE 63 Query: 70 EYQSRSQTKQSDVQY--IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDR 126 +S S ++ +K +++D +IQK E+G+ I P +T+ T + Sbjct: 64 INDKKSDEYSSKIRIDAALGILKNDKMDLVIQKLTEIGINKIIPTLTKRTIVKLKGKKSK 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 T + A +QC + L I P L ++ D++ ++ + + ++ Sbjct: 124 WDTVSKEALKQCQGVKLVEISEPLKLSE-IEYSDYDLVLLPYECAENTRIKDVLNNSEKT 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + LIGPEGG+ EE L ++LG RILR++TAA+ ++ Sbjct: 183 LKKILYLIGPEGGFSEEEVAYLQENN-AKVITLGKRILRAETAAIVVGGVL 232 >gi|89256081|ref|YP_513443.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica LVS] gi|115314557|ref|YP_763280.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica OSU18] gi|169656563|ref|YP_001428163.2| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954533|ref|ZP_06559154.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica URFT1] gi|295312049|ref|ZP_06802864.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis subsp. holarctica URFT1] gi|89143912|emb|CAJ79131.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129456|gb|ABI82643.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|164551631|gb|ABU61207.2| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 242 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 124/241 (51%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66 F D + KT SG+ Y+Y ++LR+K+ D I LFN D ++ +KI + K+I Sbjct: 7 FFSD--ISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64 Query: 67 FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 +V + + + + + IK+ + +IQK+ ++G+ I P+IT +T + Sbjct: 65 LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNG 124 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R I+ +EQC + +P I+ P + L+ ++ +V T ++ ++ Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 K+ + + I IGPEGG+ +E HS F T ++LG RIL+++TA + ++++ Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239 Query: 240 I 240 + Sbjct: 240 L 240 >gi|73667112|ref|YP_303128.1| hypothetical protein Ecaj_0493 [Ehrlichia canis str. Jake] gi|72394253|gb|AAZ68530.1| Conserved hypothetical protein 46 [Ehrlichia canis str. Jake] Length = 239 Score = 203 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL+V L + HY+ +V+R D I LFNGKDGEW+ +I V + + Sbjct: 9 RLYVTCALNKSSIITLDKLASHYICNVMRAANLDEIKLFNGKDGEWIGEIFEVSHNTKII 68 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128 V Q R Q + F+ +K L ++++S EMG+ ++P+ T++ ++ N+D+ + Sbjct: 69 VNEQIRKQVATKCLVLCFAIVKNTALQNVVRQSTEMGVTLMQPLYTKHIATSNINLDKCK 128 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + I AAEQC+ L +P I P + L K + V DET ++ E L + Sbjct: 129 KWAIEAAEQCERLDIPDILSPISFVDLGKLKSSDNNFVICDETGKGKHPSEVL---KNKD 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ I+IGPEGG+ ++E F LSLG RIL+ DTA V+A+A V Sbjct: 186 NIHIIIGPEGGFSNDELNFA--YSFCDGLSLGTRILKVDTAVVSALAYVN 233 >gi|295103834|emb|CBL01378.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii SL3/3] Length = 247 Score = 203 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 16/248 (6%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R F G H+LA V+R K GD ++L +G E+ + I+ G Sbjct: 1 MPHRYFTTE--ISDGTATLRGADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDR 58 Query: 65 IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 + F VE S + +V + K ++L+ +I+ VE+G I P +RY + Sbjct: 59 VDFAVEPGYPSAAEPTVEVTLLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + AA+QC LP + P + +++D ++F E CG Sbjct: 119 EEQKNERYNRIALEAAKQCGRGVLPDVALPLPNFGAVCRSFDQYDLVLFCYE-CGGAPLR 177 Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L +AI+ G EGG+ +E + + + + LGPRILR +TA +A + Sbjct: 178 QLLAEAKPADGQKLRLAIVTGAEGGFAAE-EAEMAASAGAKTVGLGPRILRCETAPLAVL 236 Query: 235 ALVQAICG 242 + V + G Sbjct: 237 SAVMTLTG 244 >gi|312135345|ref|YP_004002683.1| hypothetical protein Calow_1326 [Caldicellulosiruptor owensensis OL] gi|311775396|gb|ADQ04883.1| protein of unknown function DUF558 [Caldicellulosiruptor owensensis OL] Length = 243 Score = 203 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 31/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + FV+ + + +++ VLR +EGD I L +G + ++ S+I V K Sbjct: 1 MPIFFVEKQNVENDIACITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKDK 59 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E ++ + + + ++ IK ++D+++QK+ E+G+ I PV+++ ++ Sbjct: 60 IKLLIESKTLNDRESTKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +DR R A +QC P I P + + + + I+F SE S Sbjct: 120 KEEKKLDRWRKIAQEAQKQCLRPIPPLIEVPIRISEIKEKYLDKLDILFIPYEKESETSR 179 Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + + N+ ILI E L + V +SLG RILRS+T Sbjct: 180 WSLPS--NYNNIGILIGPEGGFEEEE----------VEELKTFKNVQVISLGKRILRSET 227 Query: 229 AAVAAMALVQAICG 242 A++AA++++ G Sbjct: 228 ASIAALSILMHELG 241 >gi|242038259|ref|XP_002466524.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor] gi|241920378|gb|EER93522.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor] Length = 287 Score = 203 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 10/248 (4%) Query: 2 KIHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L R P + GD++ ++ VLR+ D + LF+G G I Sbjct: 40 RARGGLPRFHAPSLPSSKGEVIRIQGDEFWHMTRVLRLGINDRVELFDGAGGLAEGFIHK 99 Query: 61 VGKSIR-FKVEYQSRSQTKQSDVQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRY 116 V K ++ +R Q ++F+ +K R D++I+K E+G ++ P++T Sbjct: 100 VDKGGSDVELLEDARIVAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTER 159 Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +DR++ ++A +QC + + PP + LL + A + + Sbjct: 160 CHTIAENRVDRLQRLVLAAVKQCQRIHEMSLKPPIQISHLLPVVSQSKLAFLA--SAEAP 217 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L L + + +++GPEG + EE +L + P+ LGP LR +TA ++ ++ Sbjct: 218 PLLSVLPKSSTEQSGLLIVGPEGDFTEEEVHSLKAAGAA-PVGLGPCRLRVETATISLLS 276 Query: 236 LVQAICGD 243 + + D Sbjct: 277 ALM-LWSD 283 >gi|257437591|ref|ZP_05613346.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii A2-165] gi|257199898|gb|EEU98182.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii A2-165] Length = 305 Score = 203 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 18/249 (7%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R F G H+L+ V+R K GD ++L +G E+ + I+ G ++ Sbjct: 59 MPHRYFTTE--ISNGTATLRGADAHHLSRVMRGKLGDTVILCDGNAVEYTATITGFGPET 116 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 + F VE S + S +V K ++L+ +I+ VE+G P +RY + Sbjct: 117 VEFSVEPGYPSAAEPSVEVTLFVGYPKQDKLEQVIRHGVELGCTHFVPFFSRYCVAAPKK 176 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178 +R AA+QC LP + P L ++ + ++F E G+ L Sbjct: 177 EEQKNERYNRIAFEAAKQCGRGVLPDVALPLPNFGALCRSLEGYDLVLFCYELGGA--PL 234 Query: 179 EKLHAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +L A A + +A++ G EGG+ +E + + + V + LGPRILR +TA +A Sbjct: 235 RQLLADAKPADGQRLKIALITGAEGGFAAE-EAEMAANAGVKTVGLGPRILRCETAPLAV 293 Query: 234 MALVQAICG 242 ++ V + G Sbjct: 294 LSAVMTLTG 302 >gi|67459503|ref|YP_247127.1| hypothetical protein RF_1111 [Rickettsia felis URRWXCal2] gi|67005036|gb|AAY61962.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 240 Score = 203 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 13/229 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + + D HY+ VLR+K D + +FNG DGE+L++I+Y Sbjct: 1 MKYN----RIYINSHLAENSKIELANDHVHYVKTVLRLKVNDGLRIFNGTDGEFLAQITY 56 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK + +++ Q + +S + + IK ++L I + ++G+ I P+ITR Q Sbjct: 57 IGKHKLSVRLKEQLKKPYTESALTLAAAIIKQDKLMLAINMATQLGITKIIPLITRRCQF 116 Query: 120 THYNMDRVR---TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N++R+ I A EQ + LT P I T++ LK +N +++A+E EN Sbjct: 117 RTINIERLTKCV---IEATEQSERLTPPIIEKAITIQDYLKQ--NNNLMLYANEHEKEEN 171 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 S+ ++ + ++ I+IGPEGG +E L S +SLG ILR Sbjct: 172 SILRILSSLSNSDITIIIGPEGGLTDDELGLLASYKNTKSVSLGNNILR 220 >gi|298694859|gb|ADI98081.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 220 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 14/217 (6%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 +R G I+L +L +I+ + K E Q+ + DV IK ++ Sbjct: 1 MRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADK 60 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIY 147 ++++QK+ E+G + V + ++R + AAEQ L +P I Sbjct: 61 YEWLLQKATELGASSFIAVSMERSIVKLNEGKVAKKIERWQKIIKEAAEQSYRLVIPSIQ 120 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEGGYHSE 203 + L+ + D+ I+ A E + L + L V ++ GPEGG Sbjct: 121 FESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSEN 180 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 E + T + LGPRILR++TA + A++ + Sbjct: 181 EISLFSNTS--TVVGLGPRILRAETAPLYALSAISYE 215 >gi|121611717|ref|YP_999524.1| 16S ribosomal RNA methyltransferase RsmE [Verminephrobacter eiseniae EF01-2] gi|121556357|gb|ABM60506.1| protein of unknown function DUF558 [Verminephrobacter eiseniae EF01-2] Length = 273 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 24/243 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKS- 64 + R PL + + VLR++ GD I LF G+ GE+ + + +G+S Sbjct: 4 MPRFHCPSPLATGAELDLPARVARH-VQVLRLQPGDGITLFHGGQGGEFDATVLRMGRSD 62 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 +R ++ R + + V + + R+D++++K+ E+G +I P++T + Sbjct: 63 VRVQLGAHHRIEREAPRAVHLLAGIMANERMDWLVEKATELGAASITPLLTERSVLKLRG 122 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC------QIVFAD-- 169 + + + ++A EQC +P ++P T L ++ C +++ A Sbjct: 123 ERADKKIAHWQAVAVAACEQCGRNRVPPVHPATALAHWVRAQAAACVQQTALRLLLAPGP 182 Query: 170 -----ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 + + + + A + IL G EGG S E++ F TP++LGPR+L Sbjct: 183 GAAPLHSAAAADRGLRPAADRDERPLYILSGAEGGLSSAEQDLARQHGF-TPVTLGPRVL 241 Query: 225 RSD 227 R++ Sbjct: 242 RAE 244 >gi|325859585|ref|ZP_08172718.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS 18C-A] gi|325482865|gb|EGC85865.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS 18C-A] Length = 259 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 27/252 (10%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK 68 +V + + ++ + VLR+KEGD + L +G+ + +++ K + Sbjct: 7 FYVPNAAALN---ELPAEEAVHALRVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYT 63 Query: 69 VEYQSRS-QTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + R + +P K R+++M +K+ E+G I + R+++ DR Sbjct: 64 IRQTMRQKPAWSGRIHLAIAPTKDMGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------------- 173 + +SA +Q P + P ++ ++N + Sbjct: 124 IEKIVVSAVKQSRKGWKPLVNPMSSFISFVENCPDKGRKFICHCYPEIPRTDFFTAITSA 183 Query: 174 ------SENSLEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 +N LE ++ +LIGPEG + EE + F + ++LG LR+ Sbjct: 184 LQPGIFLQNGLEAQKEHPSGAADITVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRT 242 Query: 227 DTAAVAAMALVQ 238 +TA ++A+ + Q Sbjct: 243 ETAGLSAVMMSQ 254 >gi|302871657|ref|YP_003840293.1| hypothetical protein COB47_1006 [Caldicellulosiruptor obsidiansis OB47] gi|302574516|gb|ADL42307.1| protein of unknown function DUF558 [Caldicellulosiruptor obsidiansis OB47] Length = 243 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 31/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + FV+ + + +++ VLR +EGD I L +G + ++ S+I V K Sbjct: 1 MPIFFVEKQNVENDIAFITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKDK 59 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E ++ + + + ++ IK ++D+++QK+ E+G+ I PV+++ ++ Sbjct: 60 IKLLIESKTLNDRESTKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDVSE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +DR R A +QC P I P + + + + I+F E S Sbjct: 120 KEEKKLDRWRKIAQEAQKQCLRPKPPLIEMPIRISEIKEKYLDKLDILFIPYEKELETSR 179 Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + + N+ ILI E L + V +SLG RILRS+T Sbjct: 180 WSLSS--NYNNIGILIGPEGGFEEEE----------VEELKTFKNVQVISLGKRILRSET 227 Query: 229 AAVAAMALVQAICG 242 A++AA++++ G Sbjct: 228 ASIAALSILMHELG 241 >gi|255020274|ref|ZP_05292342.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus caldus ATCC 51756] gi|254970194|gb|EET27688.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus caldus ATCC 51756] Length = 246 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 16/248 (6%) Query: 7 LKRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R+ + + P H+L VLR + G + LF G ++ +++ G Sbjct: 1 MPRIHLYSTETP-KEDGHWLLPPAPSHHLLRVLRGRPGQELTLFTGDGRDYPAELLGARG 59 Query: 63 KSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 K V + R I+ R D+ +QK+ E+G A++PV+ R++ Sbjct: 60 KQALLAVGRARWRDTGSPLQCCLWLPVIRAERWDWALQKATELGAWALQPVVCRHSLVPL 119 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 R R I+A EQ +P + P L L V D + G+ Sbjct: 120 AEARAPKRQQRWRDIVIAACEQSSATRIPELRPAMALSEL--GPPEVDLAVVCDPSYGT- 176 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + L +A+L GPEGG H EE SL F+ LGPRILR++TA++ A+ Sbjct: 177 SLGKVLGTRRSARRIALLCGPEGGLHPEELAWAESLGFLGA-HLGPRILRAETASITALT 235 Query: 236 LVQAICGD 243 L Q GD Sbjct: 236 LAQGFLGD 243 >gi|303232126|ref|ZP_07318829.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-049-V-Sch6] gi|302513232|gb|EFL55271.1| RNA methyltransferase, RsmE family [Veillonella atypica ACS-049-V-Sch6] Length = 243 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 105/247 (42%), Gaps = 18/247 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 +K++F+ PL D H++ HV R I + G D I + I Sbjct: 1 MKKIFIPTPL--DESIVLPKDVTHHILHVFRHNIEKPITVT-GSDN--RCGIYQINDEIN 55 Query: 66 ---RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + + S T + S +K +L++++QK+ E+ + + V T Sbjct: 56 GLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYLVPTSNCVAKYD 115 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--S 174 + R + A++QC LP + L +L ++V + G Sbjct: 116 AKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVDEPLSNVLDIESECLKLVAYENEAGYTI 175 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +++L+ +++ + ++ I IGPEGG+ +E + ++LG ILR++TAA+AA+ Sbjct: 176 KDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGG-QSVALGHTILRAETAAIAAL 234 Query: 235 ALVQAIC 241 ++V Sbjct: 235 SMVHYEL 241 >gi|241767207|ref|ZP_04764956.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN] gi|241362156|gb|EER58240.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN] Length = 245 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 25/237 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60 + R L + + VLR++ GD I LF+G GE+ + + Sbjct: 1 MPRFHCPVSLATGAELDLPAGAARH-VQVLRLQPGDGITLFHGGQDEGSPGGEFDATVLR 59 Query: 61 VGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 +G+S +R +V + + + V + R+D++++K+ E+G+ +I P++ + Sbjct: 60 MGRSDVRVQVGTHHAIEREAPRAVHLLAGITANERMDWLVEKATELGVASITPLLAERSV 119 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFA 168 + + + ++A EQC +P ++ L L+ +++ + Sbjct: 120 LKLKGERAEKKLAHWQAVAVAACEQCGRNRVPVVHEAVDLAGWLRAHAPMPAQGMRLLLS 179 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 LHA A V L GPEGG + E++ + F P++LGPR+LR Sbjct: 180 LRAGTG-----PLHATAGTGAVVFLSGPEGGLSAAEEDLALAQGFA-PVTLGPRVLR 230 >gi|300727240|ref|ZP_07060656.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14] gi|299775478|gb|EFI72072.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14] Length = 243 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 100/237 (42%), Gaps = 10/237 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F C + + D+ ++ VLR++ GD + L +G + ++++ Sbjct: 5 RYFYVPDACHRDE--LPVDEANHALRVLRLQSGDQMFLMDGNGAFYEAEVTLASSKHCHY 62 Query: 69 VEYQSRSQTKQSD--VQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + Q K + +P K R+++M +KS E+G+ + ++++ + Sbjct: 63 RITNTLVQEKAWKGKIHLGIAPTKMMERIEWMAEKSTEIGIDEFSFLHCKFSERKVLKKE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS---LEKL 181 R+ +SA +Q +P ++ T + + I ++ L L Sbjct: 123 RIEKIVVSAMKQSRKPWMPVVHEMTAFRDFIDAHTTGHRYICHCYNEIEKKDLYTELLLL 182 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +P V IL+GPEG + +E S F + +SLG LR++TA ++ + + Q Sbjct: 183 AKDEAVPEVTILVGPEGDFSIDEVNYALSQGFES-VSLGNARLRTETAGLSGVMMAQ 238 >gi|330994720|ref|ZP_08318643.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter sp. SXCC-1] gi|329758361|gb|EGG74882.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter sp. SXCC-1] Length = 246 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 10/226 (4%) Query: 8 KRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 RLF+ P+ + Q HYL VLR + G + +FN +DG+W I ++ + Sbjct: 5 PRLFIPPDTTAPMVAGGMLELEPGQAHYLGAVLRQQAGGEVAVFNARDGQWQGVIDHLRR 64 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + ++ ++R+ + +F+P+K + + +I+ E+G+ PV+T T Sbjct: 65 ERCQIRLVERTRAPEATVGLGLLFAPLKRDATETVIRMGTELGVTRFCPVVTERTNTHRL 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N R+ + AAEQC+ L +P I P L LL W + A E Sbjct: 125 NAARLESIAREAAEQCERLDVPGIDPLVPLVNLLAQWPEGISLFAALERSAPRPMAAPAQ 184 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A +LIGPEGG+ + E++ L + FV P+SLG +LR+DT Sbjct: 185 AGD-----CVLIGPEGGFSAREQDMLRARAFVRPVSLGSLVLRADT 225 >gi|225164644|ref|ZP_03726886.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] gi|224800744|gb|EEG19098.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] Length = 263 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 26/261 (9%) Query: 6 HLK--RLFVDFPLCIKTQ------GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57 + R+F P + H+L V R + GD +++F+G+ EW Sbjct: 2 RMPDFRVFCSAPASDAHTSAQALRFLLDAAESHHLVVVNRARAGDPVVVFDGRGREWTGT 61 Query: 58 ISYVGKSIRFKVEYQSR-----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112 ++ K + + V + K +D +++ + E+G+ I P+ Sbjct: 62 LAEANKRAAVIAVGTDAQAGRLAPSLPCAVTLAQALPKGGVMDDIVRHATELGVTRIVPL 121 Query: 113 ITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + TQ + +++ R + A +QC LP I P L L+ + Sbjct: 122 ESARTQVHLDGGRSDKKLEKWRAGALEACKQCGNPWLPEIAPVRGLAEFLREVGAAELRL 181 Query: 167 FADETCGSENSLEKLHAIAH------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220 A G+ + E + I + L+GPEG +EE + + F ++LG Sbjct: 182 VASLHPGARHVREVVAEARAANPTRTIKSAIWLVGPEGDLTAEEIDAALAAGF-QAVTLG 240 Query: 221 PRILRSDTAAVAAMALVQAIC 241 +LR DTAA A++++ Sbjct: 241 ALVLRCDTAATYALSVLNHEL 261 >gi|218288633|ref|ZP_03492910.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius LAA1] gi|218241290|gb|EED08465.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius LAA1] Length = 250 Score = 202 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 L RLF+D + + G+ H+ + VLR + G+ +L+ + +G + ++I+ V I Sbjct: 2 LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIADVRPGEI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------- 118 + ++ S + + K ++D ++QK E+G + Sbjct: 61 CVHLRERAPSNEPKRSFVLVQGLAKGEKMDTILQKCTEIGAWGFVVFEAERSVVRLSGAA 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176 + R R AA Q +PF+ + L + ++ DE + Sbjct: 121 KVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLAALTEHGVDHVLVLDEEERANG 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + A A+++GPEGG E+ ++LGPRILR++TA A+A+ Sbjct: 181 ILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALAI 240 Query: 237 VQAICGD 243 A GD Sbjct: 241 ALAEWGD 247 >gi|225012984|ref|ZP_03703401.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-2A] gi|225002883|gb|EEG40862.1| protein of unknown function DUF558 [Flavobacteria bacterium MS024-2A] Length = 239 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 7/225 (3%) Query: 10 LFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 LF D + +KT + + ++ ++A VLR G+ I + NG EW +++V Sbjct: 3 LFYDALIDLKTKEFTFNKEESKHIAKVLRKSSGETITVTNGSGLEWTGTLTFVSPNKTIA 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +++ + K+ + +P K N R+++M++K E+G+ +I PV+ +++ +R Sbjct: 63 QIKKSFQHLEKKHQIHLAIAPTKNNSRMEWMLEKLTELGIASITPVLCDHSERKIIKKER 122 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++ +Q LP I P + + + + + E + ++ + Sbjct: 123 FEKIIVAGLKQAQHFFLPKINDPMSFSKFIATPEFDQIFIAHCEDQPKQRLIDIPLSGTQ 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + ++IGPEG + E + P+SLG + R++TA + Sbjct: 183 ---ICLMIGPEGDFSPSEINAAIQKE-IIPISLGNQRFRTETAGL 223 >gi|325831347|ref|ZP_08164601.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1] gi|325486601|gb|EGC89049.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1] Length = 291 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 21/257 (8%) Query: 7 LKRLF-VDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 L+ + D L + + S D + A VLR+ G++I + + + +I+ Sbjct: 3 LQHFYLHDQVLADEGAPSFPLRLSPDDAKH-ARVLRLAPGEHIAVVDAAQDYFECEITAF 61 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 ++ Q ++ V + K ++++ +I+ + E+G+ A P+ + Sbjct: 62 DDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMSCERSIVRL 121 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172 + R R SAA Q P + P L + H ++ E Sbjct: 122 DAKKAAARTQRWRAIAKSAAMQSGQRACPEVGEPMALADVCAFLAHATAVLVCWEEAPLD 181 Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRS 226 E L A+ +A+++GPEGG E + L + + +SLG ILR+ Sbjct: 182 ARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRT 241 Query: 227 DTAAVAAMALVQAICGD 243 +TA + A ALV G Sbjct: 242 ETAGIVAPALVLHELGR 258 >gi|327402528|ref|YP_004343366.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola taffensis DSM 16823] gi|327318036|gb|AEA42528.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola taffensis DSM 16823] Length = 226 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%) Query: 7 LKRLF-VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 ++R F V+ P ++ ++ VLR GD LL NG ++++ K Sbjct: 1 MRRFFLVEIPNS--ETFFLPEEESKHIIRVLRYVNGDQFLLLNGLGLIVTAEVTDAHPKK 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 KV + + S +P K +R+++M++K VE+G + + ++ Sbjct: 59 CAVKVVSKEQKTRDGSGFHLGIAPTKNLDRMEWMVEKIVEIGATKLTFLNCERSERVQLK 118 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +DR++ ISA +Q L I + + + A GS+ S+++L Sbjct: 119 LDRLQRVAISAMKQAQHDFLLEIEELQSFSDFVAKNPNGG---LAHCMNGSKQSVKELKF 175 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA--MAL 236 + ILIGPEG + E E + + LG LR++TA + A +A+ Sbjct: 176 PS-----RILIGPEGDFSEAELELALKHGY-EAVHLGESRLRTETAGMVASVLAI 224 >gi|91202795|emb|CAJ72434.1| similar to RNA methyltransferase YggJ [Candidatus Kuenenia stuttgartiensis] Length = 244 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 13/241 (5%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F+ + I ++ G + H++ HV R K+G+ I LF+GK E+ + + + R K Sbjct: 5 RFFIPN-VSIDSEIWIEGKEAHHILHVKRAKQGNKITLFDGKGIEYKAVVVET-QRARLK 62 Query: 69 VEYQS---RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNT 120 V +S + + S K D +IQK E+G+ + P+ + + + Sbjct: 63 VFIESSLVVDREPNVSITIAVSIPKGKFSDILIQKCSELGIHTLTPLHCERSVVAIKETS 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLE 179 +R I +++QC L I +E LK D++ ++ + Sbjct: 123 AEKRERWNKIVIESSKQCKRNILTEITTGVAIEDFLKTLCDYDLSLMPCLRRHAM-SLKA 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + LIGPEGG+ E E + P++LG LR +TAA+A +++ Sbjct: 182 VLRERPSAKKIVCLIGPEGGFTDNEIERAVEKGCI-PVTLGSSTLRIETAAIAVSSMLLY 240 Query: 240 I 240 Sbjct: 241 E 241 >gi|257866973|ref|ZP_05646626.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873307|ref|ZP_05652960.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257801029|gb|EEV29959.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807471|gb|EEV36293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 251 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P K SG+ +H++ V+RM G + L ++KI + Sbjct: 1 MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + E + Q K+ +Q + K ++L+ ++QK E+G A V+ + Sbjct: 61 YLEEVEKEQQDKELPLQVTIASGYPKGDKLELIVQKGTELGAAAFIGFPAQTSVVKWDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 R++ AAEQ +P I + ++ ++ A E + Sbjct: 121 KLQKKQQRLQKIAQEAAEQSQRQIVPAITLLDNAKAFWQSLSQYDAVLVAYEESAKQGEA 180 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L+ + A+ V + GPEGG E E LGPRILR++TA + Sbjct: 181 AMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQNN-AKLCGLGPRILRTETAPFYFL 239 Query: 235 ALVQAIC 241 + V + Sbjct: 240 SAVSVLT 246 >gi|317490537|ref|ZP_07949014.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] gi|316910352|gb|EFV31984.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA] Length = 291 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 21/257 (8%) Query: 7 LKRLF-VDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 L+ + D L + + S D + A VLR+ G++I + + + +I+ Sbjct: 3 LQHFYLHDQVLADEGAPTFPLRLSPDDAKH-ARVLRLAPGEHIAVVDAAQDYFECEIAAF 61 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 ++ Q ++ V + K ++++ +I+ + E+G+ A P+ + Sbjct: 62 DDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMACERSIVRL 121 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172 + R R SAA Q P + P L + + H ++ E Sbjct: 122 DARKAAARTQRWRAIAKSAAMQSGQRVCPEVGEPMALADVCASLAHATAVLVCWEEAPLD 181 Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRS 226 E L A+ +A+++GPEGG E + L + + +SLG ILR+ Sbjct: 182 ARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRT 241 Query: 227 DTAAVAAMALVQAICGD 243 +TA + A ALV G Sbjct: 242 ETAGIVAPALVLHELGR 258 >gi|21674816|ref|NP_662881.1| hypothetical protein CT2005 [Chlorobium tepidum TLS] gi|21648035|gb|AAM73223.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 248 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 15/228 (6%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS 80 G+++H+LA VLR + GD + + +G + +GK S+ + ++ Sbjct: 18 AIIDGEEFHHLARVLRCQPGDVVPITDGAGFAAELMVGSIGKHSLDGAICNPRTVPPPKT 77 Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133 V S +K+ R D ++K+ E+G I P+IT+ T ++R R S Sbjct: 78 QVTVALSLLKSPQRFDLFLEKATELGAARIVPMITKRTVSTPDSGKVGRKLERWRGIVQS 137 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 AA Q LP + P T L ++ +++ + SEN+ + L Sbjct: 138 AARQSRRYHLPELMSPLTFREALVLDGYDLRLIAHE----SENAFPSFE--PAGKKILFL 191 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +G EGG+ E F TPLS G +LR++TA + A+ALV+A Sbjct: 192 VGGEGGFTDAEVADAVEAGF-TPLSFGESVLRAETAGIFAVALVRARL 238 >gi|257877049|ref|ZP_05656702.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257811215|gb|EEV40035.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 251 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 97/247 (39%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P K SG+ +H++ V+RM G + L ++KI + Sbjct: 1 MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + E + Q K+ +Q + K ++LD ++QK E+G A V+ + Sbjct: 61 YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAFIGFPAQTSVVKWDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 R++ AAEQ P I + ++ ++ A E + Sbjct: 121 KLQKKQQRLQKIAQEAAEQSQRQIAPAITLLDNAKAFWQSLSQYDAVLVAYEESAKQGEA 180 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L+ + A+ V + GPEGG E E LGPRILR++TA + Sbjct: 181 AMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQNN-AKLCGLGPRILRTETAPFYFL 239 Query: 235 ALVQAIC 241 + V + Sbjct: 240 SAVSVLT 246 >gi|256426185|ref|YP_003126838.1| hypothetical protein Cpin_7237 [Chitinophaga pinensis DSM 2588] gi|256041093|gb|ACU64637.1| protein of unknown function DUF558 [Chitinophaga pinensis DSM 2588] Length = 234 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 6/233 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 + Y VLR ++G+ +LL +G+ G + + I+ K Sbjct: 2 FYAKDITPQSGHYTMDEPTSKYCIMVLRHEKGNEVLLTDGRGGRYTTTITDDNRKKCIVT 61 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 V S V+ S K + R+++ ++K+ E+GM I P++++ T+ + DR Sbjct: 62 VNQYELMPPVASPVRIAISFTKNSSRIEWFLEKAAEIGMQMIIPLVSQRTEKEKFRADRF 121 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 +SA Q LP + P + + L++ + C E A+ Sbjct: 122 ENILVSAMLQSQQYYLPELTAPASFDTLVQQPPAQQLFIAH---CLPEQKTHLWQAMQPG 178 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +LIGPEG + EE + F P+SLG LR++TA V ++ A+ Sbjct: 179 KDSLLLIGPEGDFTPEEIHLALNKGF-QPVSLGDNRLRTETAGVVGCTMMNAV 230 >gi|329118281|ref|ZP_08246991.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465702|gb|EGF11977.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 239 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F D LC + +L HVLR + G+ I LFNG E+ + ++ V K Sbjct: 1 MPRFFADAALCRGATVALPDNVVRHL-HVLRCRAGEKIALFNGNGREYAAVLARVDKRAA 59 Query: 67 FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R V + + R+D+ +QKSVE+G+ A+ PVI+ + + Sbjct: 60 MAEILDERPSENESPLAVTLVQAVSAGERMDFTLQKSVELGVAAVIPVISSRSVVRLDGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +SA EQ +P + P L + S N+ Sbjct: 120 RAQKRVVRWQEIVVSACEQSGRCVVPEVRPLLPYAQALAALPDADAKLLM-----SLNNR 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + L I +V ++ GPEGG+ EE+E + F + L+LG R+LR++TAA+AA+A +Q Sbjct: 175 QSLRGIPPPQSVILMAGPEGGWTHEEEEAAFAAGF-SGLTLGRRVLRTETAALAALAAMQ 233 Query: 239 AICGDW 244 + GD+ Sbjct: 234 TLWGDF 239 >gi|255034262|ref|YP_003084883.1| hypothetical protein Dfer_0449 [Dyadobacter fermentans DSM 18053] gi|254947018|gb|ACT91718.1| protein of unknown function DUF558 [Dyadobacter fermentans DSM 18053] Length = 235 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 14/235 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 + P + ++ + + VLR+ GD I + NGK +++ G+ + ++V Sbjct: 4 FYQPDPHI----FELDEEEARHSSKVLRLGSGDIIQVTNGKGLLQKCRLNIQGRRVGYEV 59 Query: 70 EYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNM 124 ++ + V +P K R ++M++K E+G+ I V+T +T N N+ Sbjct: 60 IESKTAERRPFAVHMAIAPTRKAERNEWMVEKMTEIGVERIDFVVTEHTNPETLNRVVNL 119 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHA 183 R+ +A +Q +P I E +KN +++ +N++E Sbjct: 120 TRLNRIAAAAMKQSQQFYMPVITVNNKYEPFIKNAGDEVRLIAY---VPEQNTVEHVFSK 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I + +LIGPEG + +E E F T +SLGP LR++TAAVA V Sbjct: 177 IKKGADTTLLIGPEGDFSPKEVELALQAGFQT-VSLGPTRLRTETAAVAGCHAVN 230 >gi|91214831|ref|ZP_01251804.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC 700755] gi|91187258|gb|EAS73628.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC 700755] Length = 233 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 8/234 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65 ++ + T + + +++ VLR G++I L NG IS K Sbjct: 1 MQLFYEPNFDSSATSISINEMESRHISKVLRKSIGESIYLTNGLGICAEGILISNHPKKC 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + +V+ + + +P K +R ++ ++K+ E+G+ I P++ +++ Sbjct: 61 KVEVKTIIEEKKPNFRIHIAIAPTKANDRFEWFLEKATEIGIDEITPLLCDHSERRKIKA 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 DR +A +Q LP + P + L+K+ + +++ E +++ EKL Sbjct: 121 DRYEKVLQTAMKQSLKYRLPLLNPMISFNDLMKSDSDSKKMIAHCE----DDTKEKLSGT 176 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + N ILIGPEG + +E + F+ P+SL LR++TA + A V Sbjct: 177 VNRDN-LILIGPEGDFSIDEIKKAIKHEFL-PISLSEARLRTETAGIVACHTVN 228 >gi|93006276|ref|YP_580713.1| hypothetical protein Pcryo_1450 [Psychrobacter cryohalolentis K5] gi|92393954|gb|ABE75229.1| protein of unknown function DUF558 [Psychrobacter cryohalolentis K5] Length = 299 Score = 201 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 109/295 (36%), Gaps = 61/295 (20%) Query: 7 LKRLFVDFP--------------------LCIKTQGKASGDQYHYLAHVLRMKEGDNILL 46 ++R F L I + + H+ VLR GD +L Sbjct: 1 MRRFFYATNSNISNDVTNEKAATYPQLSTLPIGASVELTESIIHHWCRVLRANIGDKGIL 60 Query: 47 FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEM 104 F+G GE+ +I + K + + + + + R+DY IQKS E+ Sbjct: 61 FDGFGGEYQVQILTISKKNATVTLLSHTNNDNSAPIFTKIGLVMSRGERMDYAIQKSTEL 120 Query: 105 GMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK- 157 G+ AI+ + + + + + + I+A EQC + P I P + LK Sbjct: 121 GVTAIQLLSSHHGEVNLKPAQVEKKLAHWQQVAIAACEQCGLNRPPLIIAPIPINDWLKP 180 Query: 158 -----------------------------NWDHNCQIVFADETCGSENSLEKLHAI--AH 186 + ++ + G + L ++ Sbjct: 181 ITTTTPVKIEATISSMVTTLSQDAYYQVLQQPADLRLQLSVPAAGQPAMPDSLLSVLQQP 240 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +P + +LIGPEGG + E + F P +G R+LR++TA V A+A +QA+ Sbjct: 241 VPYIELLIGPEGGLSANECAQAADVGF-EPWQIGTRVLRTETAPVVALATLQALL 294 >gi|116333373|ref|YP_794900.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367] gi|116098720|gb|ABJ63869.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367] Length = 250 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 11/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64 ++R F+D T YH+ VLR + G + + + ++ V ++ Sbjct: 1 MQRYFLDETGVDGTNLTLPAAIYHHWVTVLRAEVGSVAEFVDDQAQLFHGQLVTVTPDQA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + +V K + +++ QK+ E+G+ I ++ Sbjct: 61 TVTLTAVPTPAVELPVEVIIACGLPKQEKAEWITQKATELGVTHIIFFGAEWSVAKWSAN 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R+ AAEQ L P + L +L + + + E + Sbjct: 121 KVPKKLARLTKIAHGAAEQAHRLRRPTVSYAPNLAAVLATSADVTILAYEESAKQGEQAA 180 Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++L + ++ + GPEGG E + + LGPRILR++TA + ++ Sbjct: 181 LNQQLQRLHPQQHLMAVFGPEGGISPAEVTRAQAAGAILA-GLGPRILRTETAPLYLLSA 239 Query: 237 VQAIC 241 V +C Sbjct: 240 VSVVC 244 >gi|297180287|gb|ADI16506.1| uncharacterized protein conserved in bacteria [uncultured bacterium HF4000_05M23] Length = 274 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 36/272 (13%) Query: 7 LKRLFVDF----------PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS 56 + R +V P K G L VLR+ GD I LF+G EW Sbjct: 1 MHRFYVPNIAFPAIDPTGPDSAKRSITLDGQLARQLKTVLRVGIGDRIGLFDGSGLEWEV 60 Query: 57 KISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 +I V ++ + + V + + R++ IQK E+G PV++ Sbjct: 61 QIDQVDRTEVAVRLISTVESVPEPFARVTMLLGLARPERIELAIQKCTELGAVRFIPVLS 120 Query: 115 RYTQN------THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF- 167 Q + +DR R I AAEQC +P + P + + + Q+ Sbjct: 121 ERVQGGVTGAPSGSRLDRWRRIAIEAAEQCGRAVVPPVDEPLPVMDAVNSQLAARQLFCM 180 Query: 168 ADETCGSENSL-EKLHAIAHIP---------------NVAILIGPEGGYHSEEKETLHSL 211 +E G + L E L +I +A+LIGP GG E + Sbjct: 181 WEERTGDSSPLGEALKSIETQALEKNDGQRETGTGGCEMAVLIGPPGGVSHAEASAIQEA 240 Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + ++LGPR+LRS+TAA+ M+ + GD Sbjct: 241 G-ASLVTLGPRVLRSETAAIVVMSAILYEMGD 271 >gi|288802568|ref|ZP_06408007.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18] gi|288335096|gb|EFC73532.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18] Length = 244 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 103/238 (43%), Gaps = 11/238 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F ++T+ ++ + VLR+KEGD + L +G+ + ++++ V Sbjct: 5 RYFYVPNAAVETE--LPAEEAVHAIRVLRLKEGDEMFLMDGEGCFYKAEVALVSSKKCLY 62 Query: 69 VEYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 ++ Q + +P K R+++M +K+ E+G I + ++++ D Sbjct: 63 TIKETLKQEPVWRGKIHLAIAPTKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRAD 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEK 180 R+ ISA +Q P + P T ++N +N + ++ + Sbjct: 123 RIEKIVISAVKQSRKGWKPVVNPMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQ 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + ++ +L+GPEG + +E F + + LG LR++TA ++A+ + Q Sbjct: 183 EEQPSSAEDITVLVGPEGDFSIDEVRFALEHGFESVI-LGNSRLRTETAGLSAVMMSQ 239 >gi|332753790|gb|EGJ84169.1| RNA methyltransferase family protein [Shigella flexneri K-671] gi|332754361|gb|EGJ84727.1| RNA methyltransferase family protein [Shigella flexneri 2747-71] Length = 178 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%) Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 +E Q + + + ++++ IQKS+E+G+ I P+ + + + Sbjct: 2 LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNK 61 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + + I+A EQC +P I P LE D ++ S N+L Sbjct: 62 KLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPL-- 119 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q G Sbjct: 120 ---PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFG 175 Query: 243 D 243 D Sbjct: 176 D 176 >gi|315222477|ref|ZP_07864375.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211] gi|315188445|gb|EFU22162.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211] Length = 247 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 24/250 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ D ++ V+R+ E D ++L + L+++S + + Sbjct: 1 MQQYFVNG-QVENPVIIRDKDTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 VE + V K ++L+++ QK+ E+G AI ++ + + Sbjct: 60 NLVEELPDNAELPIHVTVASGFPKGDKLEWVAQKATELGATAIWAFPADWS------VAK 113 Query: 127 VR------------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + AAEQ +P + L +++ A E Sbjct: 114 WDGKKLAKKAEKLEKIVLGAAEQSKRNRVPEVRLFEKKIDFLDCLSQFDRVIVAYEESAK 173 Query: 175 EN----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 E ++ + + + + GPEGG E TL + LGPRILR++TA Sbjct: 174 EGESAALVKAVTGLKIGSRILFVFGPEGGLSPAEITTLEEAGAILA-GLGPRILRTETAP 232 Query: 231 VAAMALVQAI 240 + A++ V + Sbjct: 233 LYALSAVSVL 242 >gi|312972813|ref|ZP_07786986.1| RNA methyltransferase family protein [Escherichia coli 1827-70] gi|331659081|ref|ZP_08360023.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206] gi|310332755|gb|EFP99968.1| RNA methyltransferase family protein [Escherichia coli 1827-70] gi|331053663|gb|EGI25692.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206] Length = 182 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +E Q + + + ++++ IQKS+E+G+ I P+ + + + Sbjct: 5 VLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLN 64 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + + I+A EQC +P I P LE D ++ S N+L Sbjct: 65 KKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPL- 123 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q Sbjct: 124 ----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRF 178 Query: 242 GD 243 GD Sbjct: 179 GD 180 >gi|76799987|ref|ZP_00781940.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] gi|76584697|gb|EAO61466.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae 18RS21] Length = 222 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 11/218 (5%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91 + +V+R+ E D + L + L+K+ +E + V K Sbjct: 1 MFNVMRLTEDDQVFLVFDDAIKRLAKVVDSSAHRFQILEELDXNVEMPVQVTIASGFPKG 60 Query: 92 NRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 ++LD++ QK+ E+G AI V+ + D++ + AAEQ LP Sbjct: 61 DKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQSKRNRLPQ 120 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEGGYH 201 + +I A E E L + L + + + GPEGG Sbjct: 121 VRLFEKKADFQAELAGFDKIFIAYEESAKEGELSALAQNLQTVKAGDKLLFIFGPEGGIS 180 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +E + + + LGPRI+R++TA + A++++ Sbjct: 181 PKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVISY 217 >gi|218438165|ref|YP_002376494.1| hypothetical protein PCC7424_1175 [Cyanothece sp. PCC 7424] gi|218170893|gb|ACK69626.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7424] Length = 241 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 7/235 (2%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL ++ + + Q HYL VLR+K G + ++ +G+ W + + + Sbjct: 4 RLVIEPTQKQQEWVNLTEQQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQL--- 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126 ++ + S + + + K N + +++ E+G+ PVI+ T + ++R Sbjct: 61 LDIITTSTELSIKLTLMVALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVER 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185 R I AAEQ + +P I+ P L N L Sbjct: 121 WRKIAIEAAEQSEREIIPQIFEPINFPTALTKIKEIETNKYICVTRREEVNHLFIHLQKP 180 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + ++ + GPEGG+ + E +T F P+SLG RILR+ TA V +LV A+ Sbjct: 181 LLNSLVVATGPEGGWTNLEVQTAIKAGF-EPVSLGRRILRAVTAPVYIASLVSAV 234 >gi|304385087|ref|ZP_07367433.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM 20284] gi|304329281|gb|EFL96501.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM 20284] Length = 245 Score = 200 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 11/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ L ++ + S H+L V+R + G+ I + WLS++ Sbjct: 1 MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQRVWLSQLLDNAAPAS 60 Query: 67 FK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K V+ ++S +V K ++ + +I++ EMG + RY+ + Sbjct: 61 LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--NS 177 + R +AAEQ +P + + L+ + + + + + E N Sbjct: 121 IDRKLQRFEEIAKAAAEQSHRQMIPTV-EIISFADLVNSPVQHRMVAYEESAKEGEFANF 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + + GPEGG EE ++ + F T LGPRILR+++A + ++ + Sbjct: 180 KRVLSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESAPMYVLSAI 238 Query: 238 QAIC 241 Sbjct: 239 SYQF 242 >gi|282891340|ref|ZP_06299842.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498837|gb|EFB41154.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 241 Score = 200 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 9/237 (3%) Query: 7 LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R ++ P ++ G ++H+L HV+R + G+++ + NG+ G + + ++ K Sbjct: 1 MPAERYYIPQPFQKGSELIIEGQEFHHLVHVMRTQVGESVEVVNGEGGFGHAVLEHLEKK 60 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 F+VE + +V + K NRLD++++K E+GM ++ + Sbjct: 61 RAIFRVEETVQHPKPAFEVILAQAIPKINRLDFILEKGTELGMTQFWLFPSQRGERKQLT 120 Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R+R +I+A +QC LP I LE +N +F + + + +EK Sbjct: 121 EHQIERMRALSIAAMKQCGSFYLPTILMKPPLEKWERNLP--LPALFGNVQPDAPSCVEK 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L V +GPE G+ EE++TL +L V + L P ILR+DTAA+AA+ + Sbjct: 179 LKQERFQNGVIFFVGPESGFSYEEEKTLQALD-VEGVKLHPHILRTDTAAIAALCAI 234 >gi|148284290|ref|YP_001248380.1| hypothetical protein OTBS_0493 [Orientia tsutsugamushi str. Boryong] gi|146739729|emb|CAM79559.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 250 Score = 200 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 11/247 (4%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK+ L R++ PL K S +Q +Y+ +VLR K D I +FN +GE+L+ I + Sbjct: 1 MKLK-KLHRIYSSIPLSKAGTIKLSREQANYIINVLRCKNNDQIRVFNELNGEYLAIIHH 59 Query: 61 VG-KSIRFKVEYQS-----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 K + ++ Q+ S + IK R+ +I + ++G+ I P+I+ Sbjct: 60 NNNKEVLLQIINQTKVVAKEVDANNSHLVLAQCIIKPERMARVIDMATQVGITNIVPIIS 119 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 Y+Q+ +N ++ I + Q + LT+P + P TL L + C + Sbjct: 120 EYSQHLKFNTEKYNKIIIESCRQSERLTIPILSSPVTLLHFLSQSNSEC--ILCANEQEK 177 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAA 233 + + A + + +ILIGPEGG+ +++ L + +S+G +LRS+TAA+ Sbjct: 178 IQQIHHIPA-SILSKASILIGPEGGFSEQDQSILRKAGRLIKSISIGRNVLRSETAAIYL 236 Query: 234 MALVQAI 240 ++ +Q + Sbjct: 237 LSQLQLL 243 >gi|255004318|ref|ZP_05279119.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str. Virginia] Length = 244 Score = 200 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 6/212 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 Q HY+ V+R K GD +LLF+G GEWL ++S + K + + E R + + F Sbjct: 32 QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 91 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + +K + +++++ EMG+ +P+ T Y+ + + R + + A+EQC +P + Sbjct: 92 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 151 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P L + + + Q V DET G + E L V +++GPEGG+ +EE Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE---VWVIVGPEGGFSNEELC 208 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + F +SLG RIL+ DTA V A+A V Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYVN 238 >gi|257791397|ref|YP_003182003.1| hypothetical protein Elen_1646 [Eggerthella lenta DSM 2243] gi|257475294|gb|ACV55614.1| protein of unknown function DUF558 [Eggerthella lenta DSM 2243] Length = 291 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 21/257 (8%) Query: 7 LKRLF-VDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 L+ + D L + + S D + A VLR+ G++I + + + +I+ Sbjct: 3 LQHFYLHDQVLADEGAPTFPLRLSPDDAKH-ARVLRLAPGEHIAVVDAAQDYFECEIAAF 61 Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 ++ Q ++ V + K ++++ +I+ + E+G+ A P+ + Sbjct: 62 DDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMSCERSIVRL 121 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172 + R R SAA Q P + P L + + H ++ E Sbjct: 122 DARKAAARTQRWRAIAKSAAMQSGQRACPEVGEPMALADVCASLAHATAVLVCWEEALLD 181 Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRS 226 E L A+ +A+++GPEGG E + L + + +SLG ILR+ Sbjct: 182 ARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRT 241 Query: 227 DTAAVAAMALVQAICGD 243 +TA + A ALV G Sbjct: 242 ETAGIVAPALVLHELGR 258 >gi|241895699|ref|ZP_04782995.1| protein of hypothetical function DUF558 [Weissella paramesenteroides ATCC 33313] gi|241871066|gb|EER74817.1| protein of hypothetical function DUF558 [Weissella paramesenteroides ATCC 33313] Length = 246 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKIS--YVGK 63 ++R F++ + + + + H+ VLR +EG E + +KI + Sbjct: 1 MQRYFLNE-MPTGNEFRLPEEVAHHFITVLRSREGAQAEFVLPNQHEVIVAKIVRFEAEQ 59 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----Q 118 +I + Q S D + K ++ + ++QK+ E+G I V T ++ Q Sbjct: 60 AIMAVISRQETSVELPVDTTIVIGLSKGDKPEMVVQKATELGAHHIVVVETAWSVVHWGQ 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175 + R+ +AAEQ L +P + ++L+ L+ D ++V +E+ + Sbjct: 120 KATKKLVRLNKIAAAAAEQAHRLRIPDVTYESSLDGLM--IDATVKLVAWEESAKQGETG 177 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +L+ + +V L GPEGG +E + L FV P LGPRILR++TA + A++ Sbjct: 178 ELVRQLNRLQPDDSVCFLFGPEGGLSPQEIDVLVGQGFV-PAGLGPRILRAETAPLYALS 236 Query: 236 LVQAIC 241 ++ + Sbjct: 237 VLSYVL 242 >gi|148555278|ref|YP_001262860.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas wittichii RW1] gi|148500468|gb|ABQ68722.1| protein of unknown function DUF558 [Sphingomonas wittichii RW1] Length = 210 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 6/191 (3%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 +R+K GD I LF+ GEW + I VGK + +VE + R + D+ + +PIK R+ Sbjct: 2 MRLKAGDAIALFDDMSGEWRAVIEQVGKRAVAVRVEQRMREREAVPDLWLVAAPIKKGRI 61 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 D++ +K+ E+G+ RPVITR T N+DR+R + I AAEQC+ LP + P L Sbjct: 62 DWVAEKACELGVARWRPVITRRTIVDRLNLDRLRAHMIEAAEQCERTALPILDEPVKLSA 121 Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 +L++W + ++FADE G A+ P AILIGPEGG+ EE+ + ++P Sbjct: 122 MLRDWPADRALIFADEEGGM----PMAEAVKPGP-AAILIGPEGGFTDEERAAILAVPQA 176 Query: 215 TPLSLGPRILR 225 +SLGPRILR Sbjct: 177 VGVSLGPRILR 187 >gi|325110548|ref|YP_004271616.1| ribosomal RNA small subunit methyltransferase E [Planctomyces brasiliensis DSM 5305] gi|324970816|gb|ADY61594.1| Ribosomal RNA small subunit methyltransferase E [Planctomyces brasiliensis DSM 5305] Length = 248 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 8/231 (3%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R + + + H+L +V+R K G + +FNG ++ K Sbjct: 3 QRYYCPQE-RFDEPFWLTDTEAHHLLNVMRAKPGAEVEVFNGDGLVASVVVTEASKRKAL 61 Query: 68 K--VEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--H 121 V R + + K++R ++++K E+G+ + P+ T + + Sbjct: 62 LQPVAGSQRQDPNGLSIPLTLATAVPKSDRFRWLVEKGTELGVTRLVPLKTSRSVVSPRE 121 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +++ + Y + A +Q TL I L L ++ SL Sbjct: 122 SKLEKQQQYVVEACKQSGRNTLMEIGTLVDLADYLGQLPPESLLLTGAPAVVDSKSLWSE 181 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 V + +GPEGG+ EE L P+S+GP +LR++TA + Sbjct: 182 LVETRPAEVVLFVGPEGGFTPEEDALLAEHG-AKPISVGPYVLRTETAGLT 231 >gi|270291335|ref|ZP_06197557.1| ribosomal RNA small subunit methyltransferase E [Pediococcus acidilactici 7_4] gi|270280181|gb|EFA26017.1| ribosomal RNA small subunit methyltransferase E [Pediococcus acidilactici 7_4] Length = 245 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 11/244 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ L ++ + S H+L V+R + G+ I + WLS++ Sbjct: 1 MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQKVWLSQLLDNAVPAS 60 Query: 67 FK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 K V+ ++S +V K ++ + +I++ EMG + RY+ + Sbjct: 61 LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--NS 177 + R +AAEQ +P + + L+ + + + + + E N Sbjct: 121 IDRKLQRFEEIAKAAAEQSHRQMIPTV-EIISFADLVNSPVQHRMVAYEESAKEGEFANF 179 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A + + GPEGG EE ++ + F T LGPRILR+++A + ++ + Sbjct: 180 KRVLSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESAPMYVLSAI 238 Query: 238 QAIC 241 Sbjct: 239 SYQF 242 >gi|302785802|ref|XP_002974672.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii] gi|300157567|gb|EFJ24192.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii] Length = 255 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 14/247 (5%) Query: 3 IHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + + L R + D P T + G ++ ++ VLR+ + + LFNG+ G + +S V Sbjct: 1 MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKVLRLGQDQRVELFNGRGGIVTAAVSAV 60 Query: 62 GKSIRFKVEYQ------SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 +S V + ++ + F+ +K R D+M++K E+G + P+ T Sbjct: 61 RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120 Query: 116 YTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + R + ++A +QC L + + L N D T G+ Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRQSLNISSLKSQVLKNN----EDTTAGA 176 Query: 175 ENSLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 +E + + I +++GPEG + EEK L + P+ LGPR LR +TAA+A Sbjct: 177 TEIVEVFNDSSKDIRGGTLIVGPEGDFTDEEKYDLVAAG-AMPVGLGPRRLRVETAAIAM 235 Query: 234 MALVQAI 240 +A V + Sbjct: 236 LATVMLV 242 >gi|255562222|ref|XP_002522119.1| conserved hypothetical protein [Ricinus communis] gi|223538718|gb|EEF40319.1| conserved hypothetical protein [Ricinus communis] Length = 290 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 10/243 (4%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + P + GD++ ++ VLR+ D I LFNGK I + ++ Sbjct: 45 LPRFFCEILPSSKGGIVRVQGDEFWHIVKVLRLSISDRIELFNGKGALVEGCIERIDRTG 104 Query: 65 ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120 + QT + V F +K R D++++K E+G ++ P++T + + + Sbjct: 105 LDFVAVNDPKIVLPQTIKWHVFAAFGSLKGGRADWLVEKCTELGAHSVTPLLTERSPSIS 164 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR+ ++A +QC L + PPT +E LL + A + + Sbjct: 165 DNRVDRLERVILAATKQCQRLHEMVLNPPTKVEGLLPLIADSKLSFLA--AAEATPVVNV 222 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + + I++GPEG + E + T + LGP LR +TA +A + + + Sbjct: 223 LASSRKESSGLIIVGPEGDFTEREAALMMEAG-ATAVGLGPLRLRVETATMALLGTLM-L 280 Query: 241 CGD 243 D Sbjct: 281 WSD 283 >gi|323154655|gb|EFZ40854.1| RNA methyltransferase family protein [Escherichia coli EPECa14] gi|323173840|gb|EFZ59469.1| RNA methyltransferase family protein [Escherichia coli LT-68] Length = 182 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +E + + + + ++++ IQKS+E+G+ I P+ + + + Sbjct: 5 VLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLN 64 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + + I+A EQC +P I P LE D ++ S N+L Sbjct: 65 KKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPL- 123 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + V +LIGPEGG ++E F T + LGPR+LR++T A+ A+ +Q Sbjct: 124 ----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRF 178 Query: 242 GD 243 GD Sbjct: 179 GD 180 >gi|160942759|ref|ZP_02090000.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii M21/2] gi|158445924|gb|EDP22927.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii M21/2] Length = 247 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 16/248 (6%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R F G H+LA V+R K GD ++L +G E+ + I+ G Sbjct: 1 MPHRYFTTE--ISDGTATLRGADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDR 58 Query: 65 IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 + F VE S + +V + K ++L+ +I+ VE+G I P +RY + Sbjct: 59 VDFAVEPGYPSAAEPTVEVTLLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + AA+QC LP + P + +++ ++F E CG Sbjct: 119 EEQKNERYNRIALEAAKQCGRGVLPDVALPLPNFGAVCRSFAQYDLVLFCYE-CGGAPLR 177 Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L +AI+ G EGG+ +E + + + + LGPRILR +TA +A + Sbjct: 178 QLLADAKPADGQKLRLAIVTGAEGGFAAE-EAEMAAKAGAKTVGLGPRILRCETAPLAVL 236 Query: 235 ALVQAICG 242 + V + G Sbjct: 237 SAVMILTG 244 >gi|238651023|ref|YP_002916879.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str. Rustic] gi|238625121|gb|ACR47827.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str. Rustic] Length = 244 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 MK + R++++ L ++ + + D HY+ VLR+K D + LFN DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNSTDGEFLAQIN 56 Query: 60 YVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 +GK+ + +++ Q + +S + + IK ++L I + ++G+ I P+ITR+ Q Sbjct: 57 DIGKNNLSVRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQ 116 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N++R+ I A EQ + LT P I T++ LK + +++A+E ENS+ Sbjct: 117 FRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLKKNKN--LMLYANEHEKEENSI 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ + ++ I++GPEGG+ ++E E L S + LG ILR Sbjct: 175 LRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSIILGSNILR 221 >gi|323483784|ref|ZP_08089163.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163] gi|323402869|gb|EGA95188.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163] Length = 245 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 102/250 (40%), Gaps = 28/250 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV+ + +G +++ +VLRMK G+ +L+ G++L + + Sbjct: 1 MYHFFVEQEQIGEGVIAVTGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKI 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 +E + + K ++++ +IQK+VE+G I PV T+ ++ Sbjct: 61 LFGILEKSESEMELPARIHLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 + R + SAA+Q +P + + L+ D +++ + G E + Sbjct: 121 KEEARIKRWNAISESAAKQSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEET 180 Query: 178 LEKLHAIAHIPNVAILI-------GPEGGYHSEEKETLHSLP--FVTPLSLGPRILRSDT 228 L ++AI I +E + V+P+SLG RILR++T Sbjct: 181 RRLLQTAEAGMDIAIFIGPEGGFE----------EEEIRQAGERGVSPVSLGRRILRTET 230 Query: 229 AAVAAMALVQ 238 A + ++ + Sbjct: 231 AGLCVLSALM 240 >gi|258511960|ref|YP_003185394.1| hypothetical protein Aaci_1993 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478686|gb|ACV59005.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 250 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 11/247 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 L RLF+D + + G+ H+ + VLR + G+ +L+ + +G + ++I+ V I Sbjct: 2 LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIAEVRPGEI 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------- 118 + ++ S + + K ++D ++QK E+G + Sbjct: 61 CVHLRERAPSNEPKQRFVLVQGLAKGEKMDTILQKCTEVGAWGFVVFEAERSVVRLSGAA 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176 + R R AA Q +PF+ + L + ++ DE + Sbjct: 121 KVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLVALTEHGVDHVLVLDEEERANG 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + A A+++GPEGG E+ ++LGPRILR++TA A+A+ Sbjct: 181 ILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALAI 240 Query: 237 VQAICGD 243 A GD Sbjct: 241 ALAEWGD 247 >gi|331002887|ref|ZP_08326400.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413180|gb|EGG92554.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon 107 str. F0167] Length = 245 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 110/255 (43%), Gaps = 29/255 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + FVD G +++ +VLRMK G+ +L+ + ++L KI + + Sbjct: 1 MYHFFVDEDQISGEYAYIKGSDVNHIVNVLRMKPGEELLISVKGEWDYLCKIEEIENDRV 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 KV + ++ + K+++L+ +IQK++E+G+ I PV T+ + Sbjct: 61 NLKVLESMEQRELPVNITLLQGIPKSDKLEMIIQKAIELGVSEIIPVKTKRVVVKIEEKK 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178 + R SAA+Q +P + P +++ L+ D +++ + G E + Sbjct: 121 QASKVARWNAIAESAAKQSKRSIIPKVSEPKSIDNALEIVKDFGVKLIPYENADGIEKTR 180 Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + L+ + N+A+ I E ++ F ++LG RILR++T Sbjct: 181 KILNGMDKTKNIAVFIGPEGGFEEEE----------VEKINKSGF-EVITLGKRILRTET 229 Query: 229 AAVAAMALVQAICGD 243 A +A ++ + D Sbjct: 230 AGLALLSNIMIRLED 244 >gi|86607114|ref|YP_475877.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. JA-3-3Ab] gi|86555656|gb|ABD00614.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 272 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 8/229 (3%) Query: 5 SHLKRLFVDFPLC-IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 S L RL +D + +G Q HYL V R+K GD L+ +G WL+ G Sbjct: 11 SSLPRLAIDPAQRDAGGVLRLTGPQEHYLQRVRRLKPGDPFLVLDGSGKLWLAHWQPQGS 70 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +VE R + + +K D + ++ E+G I P++T T + Sbjct: 71 QVMGEVEALPR--ELPVYLHLGLAVVKGPGFDEVFRQVTELGAARITPLLTERTVVEPGW 128 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLE 179 +R + AAEQC+ L P + PPT L + V + +L Sbjct: 129 GRRERWQKIVQEAAEQCERLRWPQVDPPTPWTSWLAELKADWWGIAVARENAPLLLQALP 188 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 KL P +A+ IGPEGG+ E+ + V P+SLG ILRS T Sbjct: 189 KLRLSERDPVLAVAIGPEGGWTEAERRQAEAHGGV-PVSLGTTILRSTT 236 >gi|290581320|ref|YP_003485712.1| hypothetical protein SmuNN2025_1794 [Streptococcus mutans NN2025] gi|254998219|dbj|BAH88820.1| hypothetical protein [Streptococcus mutans NN2025] Length = 247 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV+ D ++ +V+R+ E D ++L + L++++ V + Sbjct: 1 MQQYFVNGKASKLVTIT-DKDTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHTF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ S + V K ++L+++ QK+ E+G A+ V+ ++ Sbjct: 60 EIVDELSDNVELPVQVVIASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SEN 176 D++ AAEQ +P + L +I A E S Sbjct: 120 LKKADKLTKIAQGAAEQSKRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L ++ + + GPEGG E V + LGPRI+R++TA + A++ Sbjct: 180 LARELAQLSAGQQILFIFGPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALSS 238 Query: 237 VQAIC 241 + + Sbjct: 239 ISYVL 243 >gi|238927383|ref|ZP_04659143.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC 43531] gi|238884665|gb|EEQ48303.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC 43531] Length = 247 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 116/247 (46%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++++F L + +G H+LAHV+R + GD I + + + ++ + + + Sbjct: 1 MRQVFYSSTLT--EEIVITGGDAHHLAHVMRTQIGDVITVVDAEGQAAEMVVTALTRDAV 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 F+++ ++T +V + + +K ++D+++QK+ E+G + P++T + + Sbjct: 59 HFRMQRVLPAETAGREVILVQALLKGEKMDFIVQKAAELGAVCMCPIVTEHIVVRYDAKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSE 175 R + AA+QC +L + P +L LL++ + F E + Sbjct: 119 AAAKAARWQKIADEAAKQCGRRSLMTVAPIVSLAELLQDPAYIGAADTVTAFCYEQEERQ 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L V +++G EGG+ E + + +SLG RILR++TA++ A+A Sbjct: 179 SMRAVLRG-TEARRVTLIVGAEGGFSPAEAAAVTAAGG-QSVSLGHRILRAETASLTALA 236 Query: 236 LVQAICG 242 + Q G Sbjct: 237 VTQYELG 243 >gi|325284031|ref|YP_004256572.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus proteolyticus MRP] gi|324315840|gb|ADY26955.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus proteolyticus MRP] Length = 236 Score = 198 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 20/243 (8%) Query: 6 HLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 L R+ V L + +G + +L V+R+ GD +L+F+G+ E ++++ + Sbjct: 2 RLTRIRVPELPADLEAGPELVLTGGEVRHLG-VMRLGAGDPLLVFDGRGREARAEVTALD 60 Query: 63 --KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 ++ VE + V + +K ++L +++ + E+G+ I+ ++T++ Sbjct: 61 GLRATLRLVEELPGTPETPQPVTLAVALLKGDKLADVVRAATELGVARIQLLVTQHADVR 120 Query: 121 HY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R+ A++Q P + PP L L W+ + Sbjct: 121 DIGANKLARLNRVAAEASKQSRRAVTPEVLPPVPLAAL--TWEGQAYVAHPYVH------ 172 Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L + H + V +L GPEGG+ E E L S + LGPRILR++TA +A + Sbjct: 173 -DLLSSHLHWDSPVTLLTGPEGGFSESEMEALLSRG-AQGVVLGPRILRAETAPLALLGA 230 Query: 237 VQA 239 + A Sbjct: 231 IAA 233 >gi|329116137|ref|ZP_08244854.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD 2020] gi|326906542|gb|EGE53456.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD 2020] Length = 247 Score = 198 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F+ D ++ V+R+ +GD ++L ++L+K+ Sbjct: 1 MQQYFISGAAQPLVTIT-DKDTIKHMFQVMRLGDGDQVVLVFDDGIKYLAKVVDGAAYQL 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 V+ + V K ++LD++ QK E+G A+ V+ + Sbjct: 60 EIVQDLGENLELPVQVTIASGFPKGDKLDFITQKVTELGAEALWAYPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 +++ + AAEQ +P I + +I+ A E E Sbjct: 120 AKKEEKLAKIALGAAEQSKRNKVPEIKLFEKKADFIGQLAEFDKILIAYEESAKEGEKSA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L V + GPEGG +E E + LGPRI+R++TA + A++ Sbjct: 180 LARALATCQTGQKVLFIFGPEGGISPKEIEIFEEAGGFK-IGLGPRIMRTETAPLYALSA 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|303256695|ref|ZP_07342709.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47] gi|330999335|ref|ZP_08323052.1| putative 16S rRNA methyltransferase RsmE [Parasutterella excrementihominis YIT 11859] gi|302860186|gb|EFL83263.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47] gi|329575193|gb|EGG56744.1| putative 16S rRNA methyltransferase RsmE [Parasutterella excrementihominis YIT 11859] Length = 236 Score = 198 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 19/246 (7%) Query: 7 LKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R + F + + H+ VLRM++GD + +FNGK I + Sbjct: 1 MPRFYYFFESADTEAPLVLPPEAVHHAMRVLRMRQGDAVEVFNGKGCAVKGTIRFATDFA 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119 + + Q + + + + + ++D++I+K+ E+G I + + Sbjct: 61 EV-IPQEVIMQPRGLKLVLMQALVANEKMDWIIEKACELGYAEIAVFPSERGEVRLTCEK 119 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R +SA +QC LP I ++L+ + + ++ + + Sbjct: 120 AVKRVERWNKIAVSACQQCGENYLPNIRFCSSLKDAAAHAEGLKFVL---------SPIG 170 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 K + P V +GPEGG +E TL F + LG R+LR++TAA+AA + Q Sbjct: 171 KTYDSPDTPTAVTFAVGPEGGLSPKEINTLIESGFYS-CKLGNRVLRTETAALAAASFAQ 229 Query: 239 AICGDW 244 + GD+ Sbjct: 230 TLWGDF 235 >gi|222529537|ref|YP_002573419.1| hypothetical protein Athe_1548 [Caldicellulosiruptor bescii DSM 6725] gi|222456384|gb|ACM60646.1| protein of unknown function DUF558 [Caldicellulosiruptor bescii DSM 6725] Length = 243 Score = 198 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 31/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + FV+ + + +++ VLR +EGD I L +G + ++ S+I + K Sbjct: 1 MPIFFVEKQNIENNIAYITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKDR 59 Query: 65 IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E ++ + + ++ IK ++D+++QK+ E+G+ I PV+++ ++ Sbjct: 60 IKLLIESKTLNDRESIKNIFLFQCIIKNQKMDFIVQKATELGVKTIVPVVSKRVVIDISE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R A +QC P I P + + + + I+F SE S Sbjct: 120 KQEKKVERWRKIAQEAQKQCLRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS- 178 Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + + N+ ILI E L + V +SLG RILRS+T Sbjct: 179 -EWCISSDYNNIGILIGPEGGFEEEE----------IEELKTFKNVQVISLGKRILRSET 227 Query: 229 AAVAAMALVQAICG 242 A++AA++++ G Sbjct: 228 ASIAALSILMHEVG 241 >gi|295102912|emb|CBL00457.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii L2-6] Length = 247 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 16/248 (6%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R F G H+L+ V+R + GD ++L +G E+ + I+ G Sbjct: 1 MPHRYFTTE--ISDGTAVLRGADAHHLSRVMRGRLGDTVILCDGSAVEYTATITGFGDET 58 Query: 65 IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 + F VE S + DV + K ++L+ +I+ VE+G P +RY + Sbjct: 59 VEFSVEPGCPSAAEPTVDVTLLVGYPKQDKLEQVIRHGVELGCDHFIPFFSRYCVAAPKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178 +R AA+QC LP + P + ++ D ++F E CG Sbjct: 119 EEQKNERYNRIAFEAAKQCGRGILPDVALPLPNFGAVCRSLDQYDLVLFCYE-CGGAPLR 177 Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L +AI+ G EGG+ +E + + + + LGPRILR +TA +A + Sbjct: 178 QLLAEATPADGEKLKIAIITGAEGGFAAE-EAEMAAKAGAKTVGLGPRILRCETAPLAVV 236 Query: 235 ALVQAICG 242 + V + G Sbjct: 237 SAVMTLTG 244 >gi|225550485|ref|ZP_03771434.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379639|gb|EEH02001.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 234 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 4/230 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + H++ +V+RM+ D I++ N + ++++I + Sbjct: 1 MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDEIIVIN-ETQAFIAEIINLEPLHA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125 ++ + + + IK N ++++QK+ E+G+ +I I + T +T + Sbjct: 58 TIIKPYFNDCELSTKIDLFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNN 117 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ T A EQ L Y + LLK + I+ A E + + Sbjct: 118 RISTIIKEACEQARRNYLVNYYEQFSFSELLKVLLNYDLILVAYENEKQFFLNDVFKENS 177 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +A++IGPEGG+ EE L + V +SL ILRS+TA++ +A Sbjct: 178 TYQKIALVIGPEGGFEQEEIALLKKINNVACISLTKTILRSETASLYLLA 227 >gi|149927712|ref|ZP_01915964.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105] gi|149823538|gb|EDM82768.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105] Length = 258 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 113/250 (45%), Gaps = 18/250 (7%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R ++ + S D HY + VLR++EG+ + ++NGK E+ + I Y K Sbjct: 8 RLPRFLLEHCNSVGQVLDLSDDLMHYASRVLRLREGEALRVWNGKGCEYHATIHYASKKL 67 Query: 65 --IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 I+ + R+ V + + + +++D++++K E+G+ PV + + Sbjct: 68 AQIQVGEQLALRNTELNRPVHVLQALPEGDKMDWVLEKCTELGVAGFHPVQAQRSVVKLE 127 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETC 172 + + ++A+ Q + + + P TL L++ W + + F T Sbjct: 128 GERANKRQAHWERVVLAASLQSERGQMAQVEPVRTLSAALEHVALIWPNAHVLWF---TP 184 Query: 173 GSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +E +L K A + I +GPEGG+ EE + L PL+ R+LR++T AV Sbjct: 185 QAELALRKWTPQANPGEPLIICVGPEGGWSPEETDAATQLG-ALPLNFSQRVLRTETFAV 243 Query: 232 AAMALVQAIC 241 A A + A+ Sbjct: 244 ACTAQLTALL 253 >gi|171920821|ref|ZP_02931998.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188024285|ref|ZP_02996977.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518636|ref|ZP_03004077.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524480|ref|ZP_03004487.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867650|ref|ZP_03079652.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273733|ref|ZP_03206268.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554158|ref|YP_002284700.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551384|ref|ZP_03772330.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903589|gb|EDT49878.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018957|gb|EDU56997.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997757|gb|EDU66854.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659714|gb|EDX53094.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660707|gb|EDX53962.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249761|gb|EDY74542.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541659|gb|ACI59888.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379199|gb|EEH01564.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 234 Score = 198 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 4/230 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + H++ +V+RM+ D I++ N + ++++I + Sbjct: 1 MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDEIIVIN-ETQAFIAEIINLEPLHA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125 ++ + + + IK N ++++QK+ E+G+ +I I + T +T + Sbjct: 58 TIIKPYFNDCELSTKIDLFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNN 117 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ T A EQ L Y + LLK + I+ A E + + Sbjct: 118 RISTIIKEACEQARRNYLVNYYEQFSFSELLKVLLNYDLILVAYENEKQIFLNDIFKENS 177 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +A++IGPEGG+ EE L + V +SL ILRS+TA++ +A Sbjct: 178 TYQKIALVIGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227 >gi|325270090|ref|ZP_08136697.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM 16608] gi|324987391|gb|EGC19367.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM 16608] Length = 259 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 104/252 (41%), Gaps = 27/252 (10%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 +V + + ++ + VLR+KEGD + L +G+ + ++++ Sbjct: 7 FYVPDAAAVN---ELPAEEAVHALRVLRLKEGDELFLMDGEGCFYRAEVALATTKKCIYA 63 Query: 70 EYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 Q+ QT+ + +P K R+++M +K+ E+G + + ++++ DR Sbjct: 64 IRQTLRQTRAWRGRIHLAIAPTKDMGRMEWMAEKATEVGFDVLSFLDCKFSERKTLRTDR 123 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHAI 184 + ISA +Q P + P + +++ N + I + + + Sbjct: 124 IEKIVISAVKQSRKGWKPAVNPMMSFRSFIEHCPDNGRKYICHCYPEISRADFFSAVSCV 183 Query: 185 AH------------------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + ++ +LIGPEG + +E + F + ++LG LR+ Sbjct: 184 SPAVRSSQDRRQTDADTPSSAEDLTVLIGPEGDFSIDEVRLAMAHGFES-VTLGNSRLRT 242 Query: 227 DTAAVAAMALVQ 238 +TA ++A+ + Q Sbjct: 243 ETAGLSAVMMSQ 254 >gi|153854414|ref|ZP_01995692.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814] gi|149752940|gb|EDM62871.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814] Length = 245 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 30/254 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64 ++ FV + + G +++ +VLRMK G+ + + +G+ ++L + + Sbjct: 1 MQHFFVSPEQVKEGKIYVEGGDVNHMKNVLRMKTGEELTVNDGEGSQYLCAVESYEADMA 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 + + + S + K ++++ ++QKSVE+G + PV T+ Sbjct: 61 VLKILGKKQDESELASKIYLFQGLPKQDKMELIVQKSVELGAYQVIPVATKRAVVKLDAK 120 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177 ++R + +SAA+Q +P + T LK + + ++ + G E + Sbjct: 121 KAKKKVERWQQIAVSAAKQAGRGIIPEVGEVCTYAQALKQAEELDVVLIPYELEKGMEET 180 Query: 178 LEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + + I +V I I P++LG RILR++ Sbjct: 181 KQIIAGIRPGQSVGIFIGPEGGFEEEE----------VALAMKTG-ANPVTLGKRILRTE 229 Query: 228 TAAVAAMALVQAIC 241 TA + ++++ Sbjct: 230 TAGLTMLSVLMFHL 243 >gi|189347656|ref|YP_001944185.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium limicola DSM 245] gi|189341803|gb|ACD91206.1| protein of unknown function DUF558 [Chlorobium limicola DSM 245] Length = 248 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 17/243 (6%) Query: 10 LFVDFPLCIKTQ---GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 LF P I + GD+YH+L VLR K + I + +G + I+ + KS+ Sbjct: 3 LFYALPGQIDRKAGLVMLDGDEYHHLVRVLRKKRNECIAVTDGTGTHFDVCITAIEKSVL 62 Query: 67 FKVEYQSRSQTKQ-SDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R + + V S +K R + ++K+ E+G+ A+ P+IT T Sbjct: 63 SGTITAERPVARSATTVTVALSLLKAPPRFELFLEKATELGVSAVIPMITARTVAQPSGD 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R +T +SAA Q LP I P ++ ++ +++ + + + + + Sbjct: 123 RIAKRLIRWKTIILSAARQSGRYYLPDIIEPLPFGKVIGLSGYDRKLIPYERSPHTASDV 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N+ LIG EGG+ +EE F T +S G +LR++TA + A+++V+ Sbjct: 183 RC-----TGGNLLFLIGGEGGFTAEEVLQARDAGF-TEISFGRSVLRAETAGIFAVSMVR 236 Query: 239 AIC 241 A Sbjct: 237 ARL 239 >gi|185179060|ref|ZP_02964799.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209047|gb|EDU06090.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 234 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 4/230 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + H++ +V+RM+ D I++ N + ++++I + Sbjct: 1 MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDEIIVIN-ETQAFIAEIINLEPLHA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125 ++ + + + IK N ++++QK+ E+G+ +I I + T +T + Sbjct: 58 TIIKPYFNDCELSTKIDLFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNN 117 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ T A EQ L Y + LLK I+ A E + + Sbjct: 118 RISTIIKEACEQARRNYLVNYYEQFSFSELLKVLLSYDLILVAYENEKQIFLNDIFKENS 177 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +A++IGPEGG+ EE L + V +SL ILRS+TA++ +A Sbjct: 178 TYQKIALVIGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227 >gi|332638183|ref|ZP_08417046.1| hypothetical protein WcibK1_05770 [Weissella cibaria KACC 11862] Length = 248 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 13/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL-LFNGKDGEWLSKISYVGKSI 65 ++R F+ + D H+L VLR K G ++ ++ ++K+S +G + Sbjct: 1 MQRYFL-TETPETDEFDLPADIAHHLMTVLRGKVGTMAEFVYPDRETMVVAKVSEIGDDV 59 Query: 66 R--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 VE + I K ++ + ++QK+ E+G+ I V T ++ Sbjct: 60 TRMTVVERVEANVELPVQATLILGLAKGDKPELVVQKATELGVHHIIFVETDWSVVHWGM 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R+ AAEQ LT+P + L L + +IV +E+ + Sbjct: 120 KADKKIARLAKIAQGAAEQSHRLTVPDVQYLPNL-QALTLPEAMIKIVAWEESAKQGEAA 178 Query: 179 ---EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ + VA L+GPEGG E E L LGPRILR++TA + A++ Sbjct: 179 MLAQQFAQLRSGDEVAFLVGPEGGLKEAELELLTEKFGFVAAGLGPRILRAETAPLYALS 238 Query: 236 LVQAIC 241 + Sbjct: 239 ALSFAL 244 >gi|170017331|ref|YP_001728250.1| hypothetical protein LCK_00979 [Leuconostoc citreum KM20] gi|169804188|gb|ACA82806.1| DUF558 domain-containing protein [Leuconostoc citreum KM20] Length = 245 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 111/244 (45%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R F++ + + ++ + + VLR + G + ++++ + +S+ Sbjct: 1 MQRYFLNETITDEINLASNQSIFKHFGKVLRARVGTQAEFVDNNRRVVIAEVVTITPESM 60 Query: 66 RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN 119 KV S ++ + SP+K +R D+ +QK+ E+G+ I +T + + Sbjct: 61 HLKVINTISAEAELPLEISVVVSPLKNDRSDWFVQKATELGVHHIIFTNMARTVTDWHKQ 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 R + +AAEQ L +P + + ++ N +V +E+ S N Sbjct: 121 QDKKQLRFQKIAQAAAEQAHRLMVPTV-QFIDWQAMIAQ-PKNLGLVAWEESARAGESAN 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ + H + +L GPEGG + E L + F++ LGPRILR++TA + A++ Sbjct: 179 LVQTIREAPHGAKIVLLFGPEGGLTTSEVTELTTSHFISA-GLGPRILRAETAPLYALSA 237 Query: 237 VQAI 240 + + Sbjct: 238 ISVL 241 >gi|222152424|ref|YP_002561599.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus uberis 0140J] gi|222113235|emb|CAR40735.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 247 Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 96/245 (39%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F++ + Q + ++ V+R+ E D++++ + L+K+ + Sbjct: 1 MQQYFMNSQAQSQFQVT-DRETLKHMFQVMRLSEDDHVVIVFSDHRKRLAKVLDSQNHLF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120 VE + V K ++LD + QK+ E+G AI ++ Sbjct: 60 EIVEELDDNVELPVQVTIASGFPKADKLDLVTQKATELGAHAIWSFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 +++ + AAEQ +P + L H +I A E + Sbjct: 120 AKKAEKLEKIALGAAEQSKRNLVPEVVLFERKVDFLAELSHFDKIFIAYEESAKDGEKAA 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++ + + GPEGG +E + + LGPRI+R++TA + A++ Sbjct: 180 LAKALSSLKKGDKILFIFGPEGGISPKEIALFEGAGAIK-VGLGPRIMRTETAPLYALSA 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|313114748|ref|ZP_07800250.1| RNA methyltransferase, RsmE family [Faecalibacterium cf. prausnitzii KLE1255] gi|310622973|gb|EFQ06426.1| RNA methyltransferase, RsmE family [Faecalibacterium cf. prausnitzii KLE1255] Length = 247 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 16/248 (6%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R F G H+LA V+R + GD ++L +G E+ + I+ G Sbjct: 1 MPHRYFTTE--ISDGTATLRGADAHHLARVMRARLGDTVILCDGNAVEYTATITGFGDEC 58 Query: 66 R-FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 F+VE S + S +V + K ++L+ +I+ VE+G I P +RY + Sbjct: 59 VEFRVEPGYPSAAEPSVEVTLLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +R + AA+QC LP + P + + + ++F E CG Sbjct: 119 EEQKNERYNRIAVEAAKQCGRGVLPDVALPLANFGAVCRTFAQYDLVLFCYE-CGGAPLR 177 Query: 179 EKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + L A + +AI+ G EGG+ +E + + + + LGPRILR +TA +A + Sbjct: 178 DLLAAAKPADDEKLKIAIVTGAEGGFAAE-EAEMAAKAGARTVGLGPRILRCETAPLAVL 236 Query: 235 ALVQAICG 242 A V + G Sbjct: 237 ASVMTLTG 244 >gi|312127404|ref|YP_003992278.1| hypothetical protein Calhy_1189 [Caldicellulosiruptor hydrothermalis 108] gi|311777423|gb|ADQ06909.1| protein of unknown function DUF558 [Caldicellulosiruptor hydrothermalis 108] Length = 243 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 31/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + FV+ + + +++ VLR +EGD I L +G + ++ S+I V K Sbjct: 1 MPIFFVEKQNIENDIAYITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKDR 59 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E ++ + + + ++ IK ++D+++QK+ E+G+ I PV+++ ++ Sbjct: 60 IKLLIESKTLNDRESTKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R A +QC P I P + + + + I+F SE S Sbjct: 120 KQEKKVERWRKIAQEAQKQCLRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS- 178 Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + + N+ ILI E L + V +SLG RILRS+T Sbjct: 179 -EWCISSDYNNIGILIGPEGGFEEEE----------IEELKTFKNVQVISLGKRILRSET 227 Query: 229 AAVAAMALVQAICG 242 A++AA++++ G Sbjct: 228 ASIAALSILMHEVG 241 >gi|222097756|ref|YP_002531813.1| 16S ribosomal RNA methyltransferase rsme [Bacillus cereus Q1] gi|221241814|gb|ACM14524.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 218 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 14/216 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 M GD+I + I + VE+ S V K ++L+ Sbjct: 1 MSAGDHIYCCV-NGKTAVCSIDEITSEFINTAIVEWVETSSELPVFVTIASGLPKGDKLE 59 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + QK E+G A P + + ++R+R AAEQ +P ++ P Sbjct: 60 LIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAP 119 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + + LL + A E + N + L + + I+ GPEGG EE Sbjct: 120 ASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEI 179 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 L FV P SLGPRILR++TA + A++ Sbjct: 180 TALREHKFV-PCSLGPRILRTETAPLYALSAASYHF 214 >gi|24380387|ref|NP_722342.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus mutans UA159] gi|24378409|gb|AAN59648.1|AE015027_6 conserved hypothetical protein [Streptococcus mutans UA159] Length = 247 Score = 197 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ FV+ + D ++ +V+R+ E D ++L + L++++ V + Sbjct: 1 MQQYFVNGK--ADKLVTITDKDTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHT 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 V+ S + V K ++L+++ QK+ E+G A+ V+ ++ Sbjct: 59 FEIVDELSDNVELPVQVVIASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SE 175 D++ AAEQ +P + L +I A E S Sbjct: 119 LLKKADKLTKIAQGAAEQSKRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESA 178 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L ++ + + GPEGG E V + LGPRI+R++TA + A++ Sbjct: 179 ALARELAQLSADQQILFIFGPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALS 237 Query: 236 LVQAIC 241 + + Sbjct: 238 SISYVL 243 >gi|313157414|gb|EFR56837.1| RNA methyltransferase, RsmE family [Alistipes sp. HGB5] Length = 237 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 7/226 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++ + P S ++ + VLR+ GD + + +G+ + +I+ K Sbjct: 1 MQLFY--APDITPPLHTLSEEESKHCVRVLRLGRGDTLHITDGRGNLFCCEITDDNPKRC 58 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 +V E ++ + + +P K +R ++ ++K+ E+G+G I P+ T + + + Sbjct: 59 TVRVTETRAGWEALPYSLTMAVAPTKNADRFEWFLEKATEVGVGTIIPLETEHCERRVFK 118 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R +A +Q P + P T + + S L A Sbjct: 119 PERGERVITAAMKQSLKAYRPTLRPLTPFGEAAAMPFEGRKFIAHCAPAQSPEGKAYLPA 178 Query: 184 -IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + ILIGPEG + EE + F ++LG + LR++T Sbjct: 179 TLRRGEAALILIGPEGDFSPEEIAFARANGFEE-ITLGAQRLRTET 223 >gi|323692756|ref|ZP_08106984.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323503198|gb|EGB19032.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 245 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 101/250 (40%), Gaps = 28/250 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV+ + +G +++ +VLRMK G+ +L+ G++L + + Sbjct: 1 MYHFFVEQEQIGEGVIAVTGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKI 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 +E + + K ++++ +IQK+VE+G I PV T+ ++ Sbjct: 61 LFGILEKSESEMELPARIHLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177 + R + SAA+Q +P + + L+ D +++ + G E + Sbjct: 121 KEEARIKRWNAISESAAKQSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEET 180 Query: 178 LEKLHAIAHIPNVAILI-------GPEGGYHSEEKETLHSLP--FVTPLSLGPRILRSDT 228 L ++AI I +E + V+ +SLG RILR++T Sbjct: 181 RRLLQTAEAGMDIAIFIGPEGGFE----------EEEIRQAGERGVSSVSLGRRILRTET 230 Query: 229 AAVAAMALVQ 238 A + ++ + Sbjct: 231 AGLCVLSALM 240 >gi|78186115|ref|YP_374158.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium luteolum DSM 273] gi|78166017|gb|ABB23115.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 247 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%) Query: 10 LFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 +V + GD++H+L+ VLR KEG++I + +G I+ VGK S+ Sbjct: 4 FYVPEGSVAASVRSLMIEGDEFHHLSRVLRKKEGEHIRVTDGSGLSLEVLITSVGKRSLE 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ +S + + V S +K R D+ ++K+ E+G+ + P++T+ T + Sbjct: 64 GEILARSVVERPATGVTVAISLLKAPARFDFFLEKATELGVSGVIPMMTQRTVSQPPRER 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 M+R R +SAA Q LP ++ P + L ++ +++ E G L+ Sbjct: 124 FKGRMERWRNIMLSAARQSGRFHLPVLHEPLSFREALGLKGYDLRLIP-YEGSGVVPELD 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V LIG EGG+ E E F +S G ILR+++A + A+ALV+ Sbjct: 183 F-----PGKKVLFLIGGEGGFTPGEVEAASETGF-REMSFGRSILRAESAGIFAVALVRT 236 Query: 240 IC 241 Sbjct: 237 RL 238 >gi|284055742|pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From Porphyromonas Gingivalis gi|284055743|pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From Porphyromonas Gingivalis Length = 257 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 9/231 (3%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76 I+ + D+ ++ VLR + GD + L +G+ + + I KS V Q Q Sbjct: 13 IEQSDRLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 72 Query: 77 -TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 + + +P K + R ++ ++K VE+G+ + + + +++ +R+ ISA Sbjct: 73 KPWRDRITIAIAPTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 132 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-----IPN 189 +Q + P I ++ ++ + + A + + + Sbjct: 133 XKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 192 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 V ILIGPEG + E E+ F P+SLG LR++TA + A + + Sbjct: 193 VLILIGPEGDFSPSEVESALLAGFA-PVSLGESRLRTETAGLVACQWIHTL 242 >gi|325568307|ref|ZP_08144674.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325158076|gb|EGC70229.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 251 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 13/247 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ P K SG+ +H++ V+RM G + L ++KI + Sbjct: 1 MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGTKVGLVFEDHLAIIAKIKEADEETV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118 + E + Q K+ +Q + K ++LD ++QK E+G A V+ + Sbjct: 61 YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAFIGFPAQTSVVKWDQK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176 R++ AAEQ P I + ++ ++ A E + Sbjct: 121 KLQKKQQRLQKIAQEAAEQSQRQIAPAITLLDNAKAFWQSLSQYDAVLVAYEESAKQGEA 180 Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L+ + + V + GPEGG E E LGPRILR++TA + Sbjct: 181 AMLLQVITELPVGSKVLAIFGPEGGLAPSEIEGAQENN-AKLCGLGPRILRTETAPFYFL 239 Query: 235 ALVQAIC 241 + V + Sbjct: 240 SAVSVLT 246 >gi|159901854|gb|ABX10589.1| hypothetical protein 5H12_27 [uncultured planctomycete 5H12] Length = 239 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 14/227 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R F++ + SG+ H++ +V+RMK GD+++LF+G + E+ I+ K + Sbjct: 4 RFFINP--IATEICQISGESAHHIVNVMRMKTGDSVILFDGTNREFTGIITETDKKVVTI 61 Query: 69 VEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124 +++ + + K +R +MI+K VE+G+ ++ P+ T+ + ++ Sbjct: 62 AIQSVIEVSREQKITSTLAVAFPKGDRQKFMIEKLVELGVDSLVPLQTQRSVVNVQPRSL 121 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 ++++ + + A++QC L I P + + + V L AI Sbjct: 122 EKIQRWIVEASKQCGRNQLMQIKPTVSFNDWIHGQREGPRFVAHPHDM----RLTITDAI 177 Query: 185 AHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 ++ +GPEGG+ S+E + + T ++LG ILR +T Sbjct: 178 GQAQRAGVVSLTVGPEGGFTSQEIADAQNAGWST-IALGITILRIET 223 >gi|332978382|gb|EGK15104.1| 16S rRNA methyltransferase RsmE [Psychrobacter sp. 1501(2011)] Length = 305 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 41/269 (15%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQS 73 + + + D YH+ VLR K G+ L+F+G G+ + ++ + K V + + Sbjct: 38 QPLGSILTLTEDIYHHWCRVLRAKVGEQSLIFDGLGGQSIVELESIDKKSAQVRIVAHDT 97 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRV 127 T + +R+DY IQK+ E+G AI+ + +++ + ++ Sbjct: 98 DDNTTAYYSAIAIVMSRGDRMDYAIQKATELGATAIQLLTSQHGEVRLKANQVDKKLNHW 157 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----------------------CQI 165 + +SA EQC + P + P ++E ++ + Sbjct: 158 QQVALSACEQCGLNRPPLVMSPVSIEQCIQQQGGEPHSDVSYLANDTYYQQYFNQPTLPL 217 Query: 166 VFADETCGSENSLEKLHAIA----------HIPNVAILIGPEGGYHSEEKETLHSLPFVT 215 V A + + L+ +I P ILIG EGG E ++ Sbjct: 218 VLAVPSQQEKQQLDINASIKRHFAQALQTPSKPRFDILIGAEGGLSESEYSQARDSDYL- 276 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDW 244 P LG R+LR++TA V A+A + I ++ Sbjct: 277 PWQLGNRVLRTETAPVVALATLMYISENF 305 >gi|238019341|ref|ZP_04599767.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748] gi|237864040|gb|EEP65330.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748] Length = 243 Score = 197 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 14/245 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64 +K++F+ PL + D H++ HV R I + + + G + + Sbjct: 1 MKKIFIHTPL--DETIELPTDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQIT-EEIDGK 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + K+ S + S +K +L++++QK+ E+ + + V T + + Sbjct: 58 AQAKLIEYVESNVSSYRTILVQSLLKGEKLEWVLQKATELNIDTVYLVSTANSVAKYDDK 117 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176 R + AA+QC LP + L +L+ ++V + G ++ Sbjct: 118 KLQTKATRWEKIMLEAAQQCGRNQLPTLVVGEKLSQVLEIESDALKLVAYENEDGHTIKD 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L ++++ I ++ I IGPEGGY E + +SLG ILR++TAA+ ++A+ Sbjct: 178 VLSQVNSDESITDILICIGPEGGYQENEINAIIESGG-KSVSLGNTILRAETAAIGSLAM 236 Query: 237 VQAIC 241 ++ Sbjct: 237 IRYEL 241 >gi|87306779|ref|ZP_01088926.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM 3645] gi|87290958|gb|EAQ82845.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM 3645] Length = 240 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 11/225 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF- 67 R F++ P+ + G + H+L HV+R K G + LF+ ++ ++I VG+ Sbjct: 4 RFFLEAPIT-GDTVEIDGPEAHHLLHVMRAKIGAQVTLFDDSGAQFAAEIIAVGRKSATA 62 Query: 68 -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNM 124 V Q S+ + + K +R ++++K VE+G+ + P+ T + ++ Sbjct: 63 RVVARQEVSRELPISLTIAAALPKGDRQRWLVEKCVELGVTDLTPLDTERSVSLKKEKSL 122 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 D++R Y I A++QC+ L I L F +++ + C S L Sbjct: 123 DKLRGYVIDASKQCERNRLMRIADSAALPAFWNHASLSAVRLIADPDACESVADLLP--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A +V + IGPEGG+ +E + S + LG RILR +T Sbjct: 180 -AEPTDVIVAIGPEGGFSPDEYQAALSAGW-RGFRLGKRILRIET 222 >gi|302759931|ref|XP_002963388.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii] gi|300168656|gb|EFJ35259.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii] Length = 258 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 9/246 (3%) Query: 3 IHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + + L R + D P T + G ++ ++ LR+ + + LFNG+ G + +S V Sbjct: 1 MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKALRLGQDQRVELFNGRGGIVTAAVSAV 60 Query: 62 GKSIRFKVEYQ------SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 +S V + ++ + F+ +K R D+M++K E+G + P+ T Sbjct: 61 RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120 Query: 116 YTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + R + ++A +QC L + + L + + + Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRESLNISSLKSQVSGSSHVSLLATAGAT 180 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E + I +++GPEG + EEK L + P+ LG R LR +TAA+A + Sbjct: 181 EIVEVFNDSSKDIRGGTLIVGPEGDFTEEEKYDLVAAG-AMPVGLGHRRLRVETAAIAML 239 Query: 235 ALVQAI 240 A V + Sbjct: 240 ATVMMV 245 >gi|168701569|ref|ZP_02733846.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 237 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 14/224 (6%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 R ++ L + +G + H+L V R +GD +++FNG ++ ++I GK Sbjct: 4 RFYIPDLLGAG-EFVLTGPEAHHLVAVRRFGDGDEVVVFNGDGNDYPAQILSAGKKSVVL 62 Query: 69 VEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NM 124 + + ++ V + K +R D++++K E+G+ P+IT + Sbjct: 63 LVREPVFVNRELPFPVVVASALPKGDRADFLVEKLTELGVNRFIPLITTRAVVLPKVSVV 122 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 ++ I A++QC L + P + + D + G Sbjct: 123 EKFGRAVIEASKQCGRNCLMQVDAPQKWDSFVARADLPQPLTILHTGPGLVG-------- 174 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A + +GPEGG+ +EE E + FV SLG R+LR++T Sbjct: 175 ASGAGGTLAVGPEGGFTTEEVERALTHGFVAR-SLGSRVLRTET 217 >gi|83591910|ref|YP_425662.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum rubrum ATCC 11170] gi|83574824|gb|ABC21375.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 247 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 81/218 (37%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RL+VD PL + G Q HYL V+R+ G + LFNG+DGEWL+ + +GK+ + Sbjct: 9 RLYVDAPLAAGLDVRLDGAQAHYLRDVMRLGPGAAVALFNGRDGEWLATLDTLGKAGAQA 68 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + R Q + +F+P+K DY+++K+VE+G GA+ PV+TR TQ+ DR+ Sbjct: 69 VAQTLLRPQGDEDGPWLLFAPLKKEATDYLVEKAVELGCGALLPVMTRRTQSQKVRTDRL 128 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I AAEQC+ LTLP ++ P L +L++W ++ E + + + Sbjct: 129 RAQVIGAAEQCERLTLPAVFEPRPLAKVLEDWPAERRLFVLAERRDALPAARAFAGARAL 188 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 A+L+GPEGG ++ + L +LP TP+ LGPRILR Sbjct: 189 -KAALLVGPEGGLDDKDLDALLALPSSTPVGLGPRILR 225 >gi|313901575|ref|ZP_07835017.1| protein of unknown function DUF558 [Thermaerobacter subterraneus DSM 13965] gi|313468164|gb|EFR63636.1| protein of unknown function DUF558 [Thermaerobacter subterraneus DSM 13965] Length = 252 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 15/249 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +FVD L + D H+L VLR + GD ++ WL +++ G + Sbjct: 4 PHVFVDRELAPGAAAPLAADDAHHLLRVLRRRPGDPVVAVTPAGRRWLGRLAP-GSPPQL 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------TH 121 + + S V K +++ +I+ E+G+ PV+ + + Sbjct: 63 EAREELPSSEPPVAVTLGQGLPKGPKMEEVIRHGTEVGVARFVPVLAARSVSRPGEAGAA 122 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + AA Q +P + PP +L+ LL + I+ E + E+L Sbjct: 123 QRVQRWQRIAREAARQSQRSAVPQVEPPCSLDGLLSRGEAWDLILMPWEEEEARGLREEL 182 Query: 182 H-------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 A V IL+GPEGG+ + E E ++LGPRILR++TA V Sbjct: 183 EAAAAAWGRPAAGRRVLILVGPEGGWDAGEVEAARRAG-ARVVTLGPRILRTETAGVLVA 241 Query: 235 ALVQAICGD 243 LV + GD Sbjct: 242 GLVLHVLGD 250 >gi|47504981|gb|AAT33657.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str. 'Ames Ancestor'] Length = 218 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 14/216 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 M GD+I + I + VE+ S V K ++L+ Sbjct: 1 MSAGDHIYCCV-NGRTAVCSIDEITSEFINTAIVEWVEASSELPVFVTIASGLPKGDKLE 59 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + QK E+G A P + + ++R+R AAEQ +P ++ P Sbjct: 60 LIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAP 119 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + + LL + A E + N + L + + I+ GPEGG EE Sbjct: 120 ASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEI 179 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 L FV P SLGPRILR++TA + A++ Sbjct: 180 TVLREHNFV-PCSLGPRILRTETAPLYALSAASYHF 214 >gi|291295971|ref|YP_003507369.1| hypothetical protein Mrub_1587 [Meiothermus ruber DSM 1279] gi|290470930|gb|ADD28349.1| protein of unknown function DUF558 [Meiothermus ruber DSM 1279] Length = 232 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 21/247 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ H R FV+ I+ Q + G + H+L VLR +EGD + +F+GK E +++ Sbjct: 1 MRPH----RAFVE---SIQPQVELVGREAHHLLDVLRAREGDWLTVFDGKGLEGRARVLQ 53 Query: 61 VGKS-IRFKVEYQSR-SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 +R +VE S+ + + +K + L + + + E+G I P++T++ Sbjct: 54 TEPGWVRLQVEETWPASKEPPQPITLYVALLKGDHLAEVARAATELGASQIVPILTQHCV 113 Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + R+ + AA+QC+ +P + P L+ + V T Sbjct: 114 VRELSEAKRQRLERIVLEAAKQCERAVVPKVQPVLQLKLI---PPVEQGFVAQPRTQALL 170 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + A+L GPEGG E + L + F TP++LGPRILR++TA VA ++ Sbjct: 171 H-----EHFDPSKPTALLTGPEGGLGEAEVQFLQARGF-TPVTLGPRILRAETAPVALLS 224 Query: 236 LVQAICG 242 LV A G Sbjct: 225 LVTAAFG 231 >gi|124265393|ref|YP_001019397.1| 16S ribosomal RNA methyltransferase RsmE [Methylibium petroleiphilum PM1] gi|124258168|gb|ABM93162.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 245 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 13/232 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 + R VD PL + + VLR++ GD + LF+G+ EW +++ +G+S + Sbjct: 1 MPRFLVDMPLADGLEAALPAAAARH-VQVLRLQPGDGLTLFDGRGSEWEARVVQMGRSEV 59 Query: 66 RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 R +V Q + + R+D++++K+ E+G+ ++P++ + + Sbjct: 60 RVRVGASQPVDRELPLPITLAVGMPANERMDWLVEKATELGVSTLQPLVCERSVLRLGGE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176 + + +AAEQC TLP + P + + G+ Sbjct: 120 RADRKLAHWQGVASAAAEQCGRTTLPRLLPVRAFGEWQRALRPDVTEARFVLSLAEGTRP 179 Query: 177 SLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 +E L A+ + L GPEGG + E + + P++LGPR+LR++ Sbjct: 180 FVEALPPALRAGQGLLFLSGPEGGLCNTEDAQARAAG-LQPITLGPRVLRAE 230 >gi|225016957|ref|ZP_03706149.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum DSM 5476] gi|224950271|gb|EEG31480.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum DSM 5476] Length = 212 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 17/211 (8%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRL 94 MK G+ I+L +GK + +IS + + VE + R + ++ + K ++ Sbjct: 1 MKAGEKIVLCDGKGVDCHGEISQITDN-EVIVEIRERVENKTEPSVHIRLYQAMPKGDKF 59 Query: 95 DYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148 + ++QKSVE+G+ I PV+T ++ ++R AA+Q +P + Sbjct: 60 EQIVQKSVELGVFEIIPVLTARCISRPDAKSMRKKIERYNKIAYEAAKQSGRGRIPLVRE 119 Query: 149 PTTLEFLLKNWD--HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 + LK+ ++F + +L A ++I IG EGG+ E E Sbjct: 120 LLPFDQALKDASGREGETLLFYECGGQRIPAL----VDAGCSELSIFIGSEGGFEPSEVE 175 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 SLG RILR +TA + A++++ Sbjct: 176 RAMEAG-AQIASLGSRILRCETAPLCALSVL 205 >gi|116618287|ref|YP_818658.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097134|gb|ABJ62285.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 245 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65 ++R F++ P+ + A D + + VLR + G + L +++ + + Sbjct: 1 MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGEVTLIDYEVM 60 Query: 66 -RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN 119 ++ + DV + SP+K +R D+ IQK+ E+G+ I + + + Sbjct: 61 NIKVIDRYYSNVELPIDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVADWRKQ 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 + R +AAEQ L +P I T + N +V +E+ S Sbjct: 121 QEKKVKRFNKIAQAAAEQAHRLVVPEIIFTTWQNTI--QMPKNTGLVAWEESARDGESAA 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + A+ + + GPEGG E E L F LGPRILR++TA + AM+ Sbjct: 179 LIAAVSAVPSGEKLICVFGPEGGLTENEIEELRLQNFELA-GLGPRILRAETAPLYAMSA 237 Query: 237 VQAI 240 + + Sbjct: 238 ISVL 241 >gi|239948513|ref|ZP_04700266.1| ribosomal RNA small subunit methyltransferase E [Rickettsia endosymbiont of Ixodes scapularis] gi|239922789|gb|EER22813.1| ribosomal RNA small subunit methyltransferase E [Rickettsia endosymbiont of Ixodes scapularis] Length = 298 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 55/274 (20%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + +GD HY+ VLR+K D + +FNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSRLAENSKLELAGDHVHYVKTVLRLKVNDGLRIFNGMDGEFLAQITD 56 Query: 61 VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK ++ +++ Q + +S + S IK ++L I + ++G+ I P+ITR Q Sbjct: 57 IGKHNLSVRLKEQLKKPYTESTLILAISIIKQDKLMLAINMATQLGITKIIPLITRRCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-L 178 N++R+ I A EQ + LT P I T++ LK +N +++A+E ENS L Sbjct: 117 RSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSIL 174 Query: 179 EKLHAIAHIPN-----------------------------------------------VA 191 L ++++I + + Sbjct: 175 RILSSLSNIYSCEMKRGYTKNNLEKSKESVSRGAERILIREHLRTYKDDVANFSSSSSIT 234 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 I++GPEGG+ ++E E L S +SLG ILR Sbjct: 235 IIVGPEGGFTNDELELLASYKNTKSISLGSNILR 268 >gi|47567876|ref|ZP_00238584.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus G9241] gi|47555553|gb|EAL13896.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus G9241] Length = 218 Score = 195 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 14/216 (6%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 M GD+I + I + VE+ S V K ++L+ Sbjct: 1 MSAGDHIYCCV-NGKTAVCSIDEITSEFINTAIVEWVEASSELPVFVTIASGLPKGDKLE 59 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 + QK E+G A P + + ++R+R AAEQ +P ++ P Sbjct: 60 LIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAP 119 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + + LL + A E + N + L + + I+ GPEGG EE Sbjct: 120 ASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEI 179 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 L FV P SLGPRILR++TA + ++ Sbjct: 180 TALREHKFV-PCSLGPRILRTETAPLYVLSAASYHF 214 >gi|149176993|ref|ZP_01855602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797] gi|148844248|gb|EDL58602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797] Length = 242 Score = 195 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 10/238 (4%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64 + R F D + Q G + H+L HVLRM+ GD +L+FNG E IS K+ Sbjct: 1 MPHRFFYDGSFDVD-QLLLDGSEAHHLLHVLRMQAGDTVLVFNGTGAEAEGVISKTSRKT 59 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +V + +Q K Q+ + + K +R ++++K+ E+G+ + P++TR + Sbjct: 60 VEVQVTARHAAQAKSQTPLILATAVPKGDRFRWLVEKAAELGVTKLVPLLTRRSSVDPGQ 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEK 180 + +++ +SAA+Q + L + + L +++ AD + Sbjct: 120 NRLKKLQQTIVSAAKQSGQIQLMELTEVQNWDEFLSEISQTESRLLIADPAGSGVDFFR- 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V ILIGPEGG+ +E ++ + L ILR +TAA+ L++ Sbjct: 179 -SGEKRESPVVILIGPEGGFTPDELQSALEKG-AKSVRLSEGILRIETAAILFAGLIR 234 >gi|294054743|ref|YP_003548401.1| protein of unknown function DUF558 [Coraliomargarita akajimensis DSM 45221] gi|293614076|gb|ADE54231.1| protein of unknown function DUF558 [Coraliomargarita akajimensis DSM 45221] Length = 249 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 12/242 (4%) Query: 7 LKRL--FVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 + R F+ + + H+L V R K G+ + L +G+ + +S Sbjct: 1 MARYRSFLFPEASVGEDVIVLDPRESHHLVRVFRAKAGETVELLDGQGRRYQGVLSLAHA 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 K+ + VE + + ++ I + K +D +++ + E+G I+PV T + Sbjct: 61 KAAQVAVESVELIERPKPELTLIQALPKGKAMDLILRMATEIGATRIQPVFTDQGEVQIK 120 Query: 123 ------NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175 +++ R I A +QC + LP + P L+ LL + V A GS Sbjct: 121 GERLTSKVEKWRVGMIEACKQCGLAWLPDLAEPIALKTLLASEAATGTTRVVASLEAGSR 180 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L + + + +GPEG + + E L F P+ LG +LR++TAA ++ Sbjct: 181 PLAAVLDELEQPKRIEVAVGPEGDFSAAEYALLSECAF-KPVRLGANVLRAETAAAYLLS 239 Query: 236 LV 237 +V Sbjct: 240 VV 241 >gi|171463044|ref|YP_001797157.1| protein of unknown function DUF558 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192582|gb|ACB43543.1| protein of unknown function DUF558 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 253 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 19/249 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + + ++ P + + + H+L V R++ G+ +F+GK ++ +G Sbjct: 1 MPQFYLPGPWESQKPTTLTPEVAHHL-RVRRIQIGEFFPVFDGKGQIAKGELLSLGGKTG 59 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 ++ + + +++D++++K+VE G I P+ + Sbjct: 60 QVQLTNIRTDTHRETPYAITLAQGLAGGDKMDWIVEKAVETGAQNIAPMQCERSILKLTR 119 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETC 172 + T + +A EQCD + P T E LK +++ + + Sbjct: 120 SSDAERTQKRLAHWEGIIQAACEQCDRTVFASLEPIQTFESYLKAAPKPALKLLLSPDAS 179 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 S S+ ++ ++IGPEGG+ E +E +SLG R+LR++TA V Sbjct: 180 KSMYSVLI---ENKPQDIVLMIGPEGGHSPE-EEAQAEAAGYQLVSLGERVLRTETAGVV 235 Query: 233 AMALVQAIC 241 A+ V ++ Sbjct: 236 AITAVHSVW 244 >gi|227431610|ref|ZP_03913646.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352602|gb|EEJ42792.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 245 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 13/244 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65 ++R F++ P+ + A D + + VLR + G + L +++ + + I Sbjct: 1 MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGEVTLIDYEVI 60 Query: 66 RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN 119 KV + S DV + SP+K +R D+ IQK+ E+G+ I + + + Sbjct: 61 NIKVIDRYYSNVELPIDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVADWRKQ 120 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176 + R +AAEQ L +P I T + + N +V +++ S Sbjct: 121 QEKKIKRFNKIAKAAAEQAHRLVVPEIIFTTWQKTI--QMPKNTGLVAWEKSARDGESAA 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + A+ + + GPEGG E E L F LGPRILR++TA + AM+ Sbjct: 179 LIAAVSAVPSGEKLVCVFGPEGGLTENEIEELRLQNFELA-GLGPRILRAETAPLYAMSA 237 Query: 237 VQAI 240 + + Sbjct: 238 ISVL 241 >gi|28378630|ref|NP_785522.1| hypothetical protein lp_1989 [Lactobacillus plantarum WCFS1] gi|300768158|ref|ZP_07078063.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180786|ref|YP_003924914.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271466|emb|CAD64371.1| unknown [Lactobacillus plantarum WCFS1] gi|300494222|gb|EFK29385.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046277|gb|ADN98820.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 250 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 95/248 (38%), Gaps = 14/248 (5%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F+ P+ I +G+ + V+R + GD L+ + Sbjct: 1 MQRYFLSTPITTTIGQTFTITGETVKHWVKVMRAQPGDTAEFVTTTHQVVLADLVKSDGR 60 Query: 65 IRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V K ++ + ++Q+ E+G A +++ Sbjct: 61 TATATITAVTTPHVELPLPVTIACGLSKGDKPEQIVQRGTELGASAFVFFDSQWAVAKWA 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---G 173 + R+ AAEQ +P + T L LL + ++ +V +E+ Sbjct: 121 ANKRARKLARLAKIAQGAAEQSHRTMIPSVSYATDLNQLLAHVSYDTGVVAWEESAKQGE 180 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S ++ L + + + GPEGG +E TL + + + LGPRI+R++TA + Sbjct: 181 SSQLVQTLKTMTAPQRLLAIFGPEGGLAPQEVATLQTAG-IAAVGLGPRIMRAETAPLYL 239 Query: 234 MALVQAIC 241 ++ V C Sbjct: 240 LSSVSFWC 247 >gi|294782590|ref|ZP_06747916.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA] gi|294481231|gb|EFG29006.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA] Length = 235 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQ 79 + +++ +V R ++GD + +G + E+L +I + K I+ K+ + + + Sbjct: 15 LVIDANDINHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 ++ S +K +++D IQK E+G+ I P+ + DR T A +QC Sbjct: 74 IELDAGISILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197 + + ++ L N ++ E + L + + +IG E Sbjct: 134 QGVVPTVVDEIKKIDKL--NLKDYDLVLVPYENEEEIFLKDILRNLKVKPSKILYIIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L S +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDFLKSQG-AKIISLGKRILRAETAAIV 225 >gi|317497460|ref|ZP_07955780.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895246|gb|EFV17408.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 231 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 26/234 (11%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFKVEYQSRSQTK-Q 79 + G +++ +VLRMK GD + L NG D E+ + +I K+E +T+ Sbjct: 2 IEICGSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELP 61 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTIS 133 + K ++++ ++QK+VE+G+ I PV + + R T +S Sbjct: 62 VKITLYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCIVKLDAKKAAKKVSRWNTIALS 121 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA+Q +P + + +L+ D +V +E G + S E + ++ Sbjct: 122 AAKQAKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIG- 180 Query: 193 LIGPEGG--------YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + EE E L + T +SLG RILR++TA + ++++ Sbjct: 181 -------IIIGPEGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSILM 226 >gi|312622233|ref|YP_004023846.1| hypothetical protein Calkro_1166 [Caldicellulosiruptor kronotskyensis 2002] gi|312202700|gb|ADQ46027.1| protein of unknown function DUF558 [Caldicellulosiruptor kronotskyensis 2002] Length = 243 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 113/254 (44%), Gaps = 31/254 (12%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + FV+ + + +++ VLR +EGD I L +G + ++ S+I + K Sbjct: 1 MPIFFVEKQNIENNIAYITDIEDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKDR 59 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E ++ + + + ++ IK ++D+++QK E+G+ I PV+++ ++ Sbjct: 60 IKLLIENKTLNDRESTKNIFLFQCIIKNQKMDFIVQKVTEIGVKTIVPVVSKRVVIDISE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R A +QC P I P + + + + I+F SE S Sbjct: 120 KQEKKVERWRKIAQEAQKQCLRPMPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS- 178 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKET----------LHSLPFVTPLSLGPRILRSDT 228 + + N+ IL+ L + V +SLG RILRS+T Sbjct: 179 -EWCISSDYNNIGILV----------GPEGGFEEEEIEELKTFKNVKVISLGKRILRSET 227 Query: 229 AAVAAMALVQAICG 242 A++AA++++ G Sbjct: 228 ASIAALSILMHELG 241 >gi|15672086|ref|NP_266260.1| hypothetical protein L105256 [Lactococcus lactis subsp. lactis Il1403] gi|12722949|gb|AAK04202.1|AE006248_10 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] Length = 250 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 9 RLFVDFPL-CIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV L + + H++ V+R K GD I L LS++ Sbjct: 4 QYFVFKKLPELGEEFIIENQAAAHHIFTVMRAKSGDQIRLVFTDGEIGLSEVISPSDQSV 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR--PVITRYT----QNT 120 ++ + S + K ++LD++++KS E+G AI P + + Sbjct: 64 KLIKLLTESSELPVQITVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177 +++ + AAEQ +P + LL + Q++ A E Sbjct: 124 TKKQEKLEKVALGAAEQSRRQMIPELQLFEQFTDLLDKFSDFDQVLIAYEESAKMGEKTM 183 Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++ V I+ GPEGG +E L + LGPRILR++TA + A++ Sbjct: 184 FKQALTEMSLNQKVLIIFGPEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSS 242 Query: 237 VQAIC 241 + A Sbjct: 243 ISAYF 247 >gi|228861774|ref|YP_001710445.2| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis subsp. sepedonicus] Length = 254 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 13/243 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ 72 L + +G + + V R++ G+ IL+ +G+ ++ + + +V+ Sbjct: 13 SDLAVGRLLVLAGQEARHAVTVSRVRSGEGILVGDGRGTIASGTVTSAEPQRLELRVDAV 72 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 V + + K +R + +Q + E+G+ A+ P + + Q DR Sbjct: 73 EAHPEPSPRVVLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDR 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF-----ADETCGSENSLEKL 181 R AA+Q +P + P T + L++ +V A+ + Sbjct: 133 WRAIVREAAKQSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTAEARLSRLDLAAAD 192 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +V +++GPEGG E E L + P++LG ILR+ TA AA+ALV A Sbjct: 193 GDADAATDVLLVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGL 251 Query: 242 GDW 244 G W Sbjct: 252 GRW 254 >gi|164686290|ref|ZP_02210320.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM 16795] gi|164601892|gb|EDQ95357.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM 16795] Length = 250 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 105/260 (40%), Gaps = 38/260 (14%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R FVD G+ +++ VLR K G+ + + + + E++ +I+ + K Sbjct: 1 MDRFFVDKNNINLENNTCVIVGEDVKHISKVLRCKIGEKLEICDKDNSEYICEITDINKE 60 Query: 65 IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 +E + + V+ K+ +++ ++QK E+G+ I V T+ + Sbjct: 61 QVDLDIIEKREIKRESDLKVKLYQGLPKSTKMELILQKLTEVGVDEIILVSTKRSVVKVD 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + ++R AA+Q +P + + + L++ +N + E + + Sbjct: 121 DKKEGKKIERWERIMYEAAKQSKRGKIPKLRGILSFKEALEDMKNNDMNICPYENERTVS 180 Query: 177 SLEKLHAIAHIPNVAILI-------------GPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 + A I ++ I + + ++S +SLGPRI Sbjct: 181 IKSAIEG-ADINSIGIFVGPEGGFEEEEIEN----------IQDINS----KVVSLGPRI 225 Query: 224 LRSDTAAVAAMALVQAICGD 243 LR++TA+V A ++V D Sbjct: 226 LRTETASVVASSIVLYELSD 245 >gi|281490567|ref|YP_003352547.1| RNA methyltransferase family protein [Lactococcus lactis subsp. lactis KF147] gi|281374385|gb|ADA63918.1| RNA methyltransferase family protein [Lactococcus lactis subsp. lactis KF147] Length = 250 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 9 RLFVDFPL-CIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV L + + H++ V+R K GD I L LS++ Sbjct: 4 QYFVFKKLPELGEEFIIENQAAAHHIFTVMRAKIGDQIRLVFTDGEIGLSEVISPSDQSV 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR--PVITRYT----QNT 120 ++ + S + K ++LD++++KS E+G AI P + + Sbjct: 64 KLIKLLTESSELPVQITVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177 +++ + AAEQ +P + LL + Q++ A E Sbjct: 124 TKKQEKLEKVALGAAEQSRRQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTM 183 Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++ V I+ GPEGG +E L + LGPRILR++TA + A++ Sbjct: 184 FKQALTEMSLNQKVLIIFGPEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSS 242 Query: 237 VQAIC 241 + A Sbjct: 243 ISAYF 247 >gi|296116281|ref|ZP_06834897.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter hansenii ATCC 23769] gi|295977100|gb|EFG83862.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter hansenii ATCC 23769] Length = 247 Score = 194 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 7/226 (3%) Query: 8 KRLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 RLF+D P+C + D+ HYL +VLR+ G +++FN +DGEW + I + + Sbjct: 5 PRLFMDPQAFPPMCPDAVIRLEPDRAHYLGNVLRLSAGGRVVVFNARDGEWSATIEVLRR 64 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 ++ + R +F+P+K + + +I+ E+G+ PVIT T Sbjct: 65 DRGEIRLVHMDRPPRVTQGPGIMFAPLKRDATEMIIRMGTELGVECFYPVITERTNTHRL 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N R+ A+EQC+ L +P I P + + + + Q+ A E + + ++ Sbjct: 125 NEGRLSAIAREASEQCERLDVPAIAPIRPMMEAIAHAPTDMQLFVALERL--DPTAQESE 182 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P A+LIGPEGG+ E++ L P LSLGP +LR+DT Sbjct: 183 VPRACPGDALLIGPEGGFSPREQDFLRGRPATRLLSLGPLVLRADT 228 >gi|326405687|gb|ADZ62758.1| ribosomal RNA small subunit methyltransferase E [Lactococcus lactis subsp. lactis CV56] Length = 250 Score = 194 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 13/245 (5%) Query: 9 RLFVDFPL-CIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + FV L + + H++ V+R K GD I L LS++ Sbjct: 4 QYFVFKKLPELGEEFIIENQAAAHHIFTVMRAKSGDQIRLVFTDGEIGLSEVISPSDQSV 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR--PVITRYT----QNT 120 ++ + S + K ++LD++++KS E+G AI P + + Sbjct: 64 KLIKLLTESSELPVQITVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKL 123 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177 +++ + AAEQ +P + LL + Q++ A E Sbjct: 124 TKKQEKLEKVALGAAEQSRRQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTM 183 Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + L ++ V I+ GPEGG +E L + LGPRILR++TA + A++ Sbjct: 184 FKQALTEMSLNQKVLIIFGPEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSS 242 Query: 237 VQAIC 241 + A Sbjct: 243 ISAYF 247 >gi|74316173|ref|YP_313913.1| 16S ribosomal RNA methyltransferase RsmE [Thiobacillus denitrificans ATCC 25259] gi|74055668|gb|AAZ96108.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 242 Score = 194 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKE------------GDNILLFNGKDGEWL 55 R F+D L + + GD + LFNG+ GE+ Sbjct: 4 PRFFLDQTLSLGARFGLP------------AGPARHAARALRLAAGDALTLFNGRGGEYT 51 Query: 56 SKISYVGKSIRFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113 + + + + R ++S + R+DY +QK+ E+G+ AI+P+ Sbjct: 52 ASVERITRDEVAVAITGFREIERESRLAITLAQGISSGERMDYTLQKATELGVTAIQPIA 111 Query: 114 TRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 + + + + + SA EQC LP I P L L + Sbjct: 112 AKRSVVKLAGERAEKRVAHWQGVVASACEQCGRNRLPSIAAPLPLAQWLGTGTDERLLFL 171 Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + L A +V I GPEGG+ ++E LH+ V P+ LGPR+LR++ Sbjct: 172 SPLAQARLADL----AAPSGRDVLIA-GPEGGFEADEIAALHAAGAV-PIRLGPRVLRTE 225 Query: 228 TAAVAAMALVQAICGDW 244 TAA+AA+A +Q + GD+ Sbjct: 226 TAALAALAAMQTLWGDF 242 >gi|254556845|ref|YP_003063262.1| hypothetical protein JDM1_1678 [Lactobacillus plantarum JDM1] gi|254045772|gb|ACT62565.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] Length = 250 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 14/248 (5%) Query: 7 LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F+ P+ I +G+ + V+R + GD L+ + Sbjct: 1 MQRYFLSTPITTTIGQTFTITGETVKHWVKVMRAQPGDTAEFVTTTHQVVLADLVKSDGR 60 Query: 65 IRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + V K ++ + ++Q+ E+G A +++ Sbjct: 61 TATATITAVTTPHVELPLPVTIACGLSKGDKPEQIVQRGTELGASAFVFFDSQWAVAKWA 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---G 173 + R+ AAEQ +P + T L LL + ++ +V +E+ Sbjct: 121 ANKRARKLARLAKIAQGAAEQSHRTMIPSVSYATDLNQLLAHVSYDTGVVAWEESAKQGE 180 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 S ++ L + + + GPEGG +E TL + +T LGPRI+R++TA + Sbjct: 181 SSQLVQTLKTMTAPQRLLAIFGPEGGLAPQEVATLQTAG-ITAAGLGPRIMRAETAPLYL 239 Query: 234 MALVQAIC 241 ++ V C Sbjct: 240 LSSVSFWC 247 >gi|257483559|ref|ZP_05637600.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 151 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 14/158 (8%) Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFI 146 R+D+ IQK+ E+G+ I P+++ + + ISA EQC +P I Sbjct: 2 RMDWAIQKATELGVSEITPIVSERCEVRLKDERAEKRQAHWQQIAISACEQCGRSVVPVI 61 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 + P L +K+ + + ++V E L + ++A LIGPEGG + E + Sbjct: 62 HAPMPLAEWIKHTEADLKLVLHP-------VAEPLTSHDKPASLAFLIGPEGGLNDAEVD 114 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + F LGPR+LR++TA V A+++ Q + GD+ Sbjct: 115 QAQAAGF-HAARLGPRVLRTETAPVVALSVAQQLWGDF 151 >gi|258651801|ref|YP_003200957.1| hypothetical protein Namu_1573 [Nakamurella multipartita DSM 44233] gi|258555026|gb|ACV77968.1| protein of unknown function DUF558 [Nakamurella multipartita DSM 44233] Length = 259 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 13/243 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+ L G + + A V R++ G+ ++L +G + ++ G+ + Sbjct: 21 FFLVHELPAAGPFVLDGPEGRHAAAVRRLRVGEALVLTDGAGRLAAAVVTAAGRAELTLD 80 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTH 121 V+ R V + + K R + ++ + E G+ AI P + Sbjct: 81 VQPAHRQPPPDVRVTLVQALPKGERGELAVELATEAGVDAIVPWTAQRCMARWRTPDQVD 140 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R R +A+Q +P ++ P T + +V + + + Sbjct: 141 KGVRRWRATARESAKQARRAFVPPVHEPATTAEVGARLTGATALVLHESSV----TPLAA 196 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + +V +++GPEGG EE S T + LGP++LR+ TA A+ + + Sbjct: 197 AGLPPAGDVVLIVGPEGGLTEEELTVFGSAG-ATVVRLGPQVLRTSTAGAVALGALGVLT 255 Query: 242 GDW 244 G W Sbjct: 256 GRW 258 >gi|13357861|ref|NP_078135.1| hypothetical protein UU301 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761930|ref|YP_001752383.1| hypothetical protein UPA3_0309 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920402|ref|ZP_02931725.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508812|ref|ZP_02958267.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701985|ref|ZP_02971610.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11356793|pir||B82909 conserved hypothetical UU301 [imported] - Ureaplasma urealyticum gi|6899276|gb|AAF30710.1|AE002127_8 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827507|gb|ACA32769.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902842|gb|EDT49131.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675768|gb|EDT87673.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700758|gb|EDU19040.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 234 Score = 193 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 4/230 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R FV + H++ +V+RM+ D +++ N K ++++I + Sbjct: 1 MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDKVIVIN-KTKAFVAEIINLEPLHA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125 ++ + + + + + IK N ++++QK+ E+G+ +I I + T ++ + Sbjct: 58 TIIKPYTLNCELATKIDLFQASIKPNNFEWIVQKACELGVNSIYQTIFKRTYNHSLIKTN 117 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R+ T A EQ L Y + LLK I+ A E Sbjct: 118 RILTIIKEACEQARRNHLVNYYAQFSFNELLKYLRDYDLILIAYENEKQNLLNNAFKEEL 177 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +A++IGPEGG+ E L +SL ILRS+TA++ +A Sbjct: 178 TYQKIALVIGPEGGFEQMEINLLKQFDNAICISLTKTILRSETASLYLLA 227 >gi|237740316|ref|ZP_04570797.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229422333|gb|EEO37380.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 235 Score = 193 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQ 79 + +++ +V R ++GD + +G + E+L +I + K I+ K+ + + + Sbjct: 15 LVIDTNDINHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 ++ S +K +++D IQK E+G+ I P+ + DR T A +QC Sbjct: 74 IELDAAISILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197 + + ++ L N ++ E + L + + +IG E Sbjct: 134 QGVVPTVVDEIKKIDKL--NLKDYDLVLVPYENEEEVFLKDILRNLKVKPSKILYVIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L S +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDFLKSQG-AKIISLGKRILRAETAAIV 225 >gi|323359828|ref|YP_004226224.1| hypothetical protein MTES_3380 [Microbacterium testaceum StLB037] gi|323276199|dbj|BAJ76344.1| uncharacterized protein conserved in bacteria [Microbacterium testaceum StLB037] Length = 244 Score = 193 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 9/232 (3%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQT 77 + +G + H+ + V R++ + + L +G+ ++ K + ++ + Sbjct: 16 GDVVELTGSEAHHASAVRRVRVDEAVTLGDGRGTWLTGLVTAASPKQVDVRITAREDVPA 75 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTI 132 + + K +R + +Q + E+G+ AI P ++R+ + R RT Sbjct: 76 PSPRFVLVQALAKGDRDELAVQAATELGVDAIVPWQASRSVSRWDAKAEKGLARWRTIVR 135 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA+Q +P + L++ VF E + +V + Sbjct: 136 EAAKQAHRAWIPEVEGLARTADLVRL--AATSQVFVLEPSAPARLTAVATEASDGRDVVL 193 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG EE L + LG +LR+ TA AA++++ A G W Sbjct: 194 VVGPEGGIAPEELSALERAGARQ-VRLGETVLRTSTAGAAAISVLSAAHGRW 244 >gi|146328991|ref|YP_001209347.1| hypothetical protein DNO_0433 [Dichelobacter nodosus VCS1703A] gi|146232461|gb|ABQ13439.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 240 Score = 193 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 18/243 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 RL + + S +H+ VLR++E D + + G + +I+ + + Sbjct: 5 RLLCEGQPAVGEAVALSDVSHHHALKVLRLRENDAVDVICGDGYFYHGEITCIDRKQTLV 64 Query: 69 VEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 Y S +++V + + +K +D+++QKSVE+G+ + P+ T ++ Sbjct: 65 RVYSRSEHSTRPKTEVILLPALLKGEPMDWVLQKSVELGVRRVIPMNTERSERRIEGDRL 124 Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLE 179 + + ++A QC P + P LK I+ DET + + Sbjct: 125 TSKYEHWQGILQASALQCGRAEWPLLSLPMNFIDALKTIADEKWILSPHDETTPAIKEMP 184 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++A+++GPEGG+ +E ++ + + T G RILR+DTA+V A+ Q Sbjct: 185 S--------SIALMVGPEGGFSEDEVQSAVHMGWKTHC-FGSRILRADTASVVAVVKAQL 235 Query: 240 ICG 242 + G Sbjct: 236 LLG 238 >gi|300173195|ref|YP_003772361.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc gasicomitatum LMG 18811] gi|299887574|emb|CBL91542.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc gasicomitatum LMG 18811] Length = 247 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 16/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 ++R F++ L + DQ + + VLR + G + + ++ + + Sbjct: 1 MQRYFLEN-LINSDHITLTKDQDVFKHFGKVLRARVGSQAEFVSVDLKVVIGEVIAIDEA 59 Query: 64 SIRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT 117 I V+ + S +V I SP+K +R D+++QK+ E+G+ I + + Sbjct: 60 KITLAVKSRLDSDVELPLNVTIIVSPLKNDRSDWLVQKATELGVNRIVFAEMTRTVADWK 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R++ +AAEQ L +P I T L + +V +E+ + Sbjct: 120 KQEAKKAVRLQKIAQAAAEQSHRLLVPQIQFLTWQNVL--DLPKQMGLVAWEESARTGEV 177 Query: 178 LEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + +I +P +V ++ GPEGG E E L + P LGPRILR++TA + A+ Sbjct: 178 ATLVKSINEVPIDTDVNLVFGPEGGLTILEIEALARHEYY-PAGLGPRILRAETAPLYAL 236 Query: 235 ALVQAI 240 + + + Sbjct: 237 SAISVL 242 >gi|167009794|ref|ZP_02274725.1| hypothetical protein Ftulh_03505 [Francisella tularensis subsp. holarctica FSC200] Length = 212 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 111/214 (51%), Gaps = 14/214 (6%) Query: 36 LRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ-YIFSPIKTN 92 LR+K+ D I LFN D ++ +KI + K+I +V + + + + + IK+ Sbjct: 2 LRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYITNLYQAIIKSE 61 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFI 146 + +IQK+ ++G+ I P+IT +T + ++R I+ +EQC + +P I Sbjct: 62 NFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPKI 121 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 + P + L+ ++ +V T ++ ++K+ + + I IGPEGG+ +E Sbjct: 122 HTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQKVKSSTNFN---IFIGPEGGFSDKEMS 177 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 HS F T ++LG RIL+++TA + ++++ + Sbjct: 178 KFHSNNFYT-INLGKRILKAETAPINILSIINFL 210 >gi|255994330|ref|ZP_05427465.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC 49989] gi|255993043|gb|EEU03132.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC 49989] Length = 248 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 118/250 (47%), Gaps = 19/250 (7%) Query: 7 LKRLFVDFPLCIKTQGK-ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + + FV+ + + + + + H++ HVLR+ G ILL +GK+ E+ I +G + Sbjct: 1 MNKFFVEKSFVVGSGFEILNPEDVHHIVHVLRLIAGSRILLSDGKN-EYEGVIEDIGGEV 59 Query: 66 RF-KVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----Q 118 K+ +RS + ++ ++ I K +++++++K+ E+G+ + P + Sbjct: 60 VKGKITDLNRSFRERKVELSLIQGIPKAKKIEFIVEKAAELGVMKVFPAFMDRSIVKPTN 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 DR+ +SA EQ + + + ++ + D + +++ + G N+L Sbjct: 120 KDDEKHDRLLKKALSACEQSKRNRVMRVGKLREFKDIILDIDADIKLIAYENEEG--NTL 177 Query: 179 EKL-------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + + + ++A++IGPEGG E + + P+SLG ILR++TA + Sbjct: 178 KDVLSEYGNGNDACKAMSIALVIGPEGGITDSELSIASANGY-KPVSLGGSILRTETAGL 236 Query: 232 AAMALVQAIC 241 A +++ Sbjct: 237 VAASMIFYEF 246 >gi|326333962|ref|ZP_08200192.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium Broad-1] gi|325948241|gb|EGD40351.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium Broad-1] Length = 247 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 14/236 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRS 75 + + SGD+ H+ V R++ G+ ++L +G I+ K + +V E Sbjct: 16 VGDAVEVSGDEGHHAVVVRRLRVGEEVVLTDGAGEGVTGTITQTTKKSMTVRVDEIIIGD 75 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 + + + + K +R + ++ E+G I P + + ++ R R Sbjct: 76 APPEPSLTVVQALPKGDRGELAVEMVTEIGAARIVPWAAARSVAVWKGERAVKSLARWRA 135 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIP 188 AA+Q L P + P T + ++ + + +V +E ++ + Sbjct: 136 TAREAAKQSRRLWHPEVEPLATTDAVVAMIEAADVAVVLHEEGTLPLGAVPVIDE----G 191 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG +E T + LG +LR+ TA VAA A + A W Sbjct: 192 SILVVVGPEGGLTVDEIALFEKAG-ATTIRLGGEVLRTSTAGVAACAALLARTRRW 246 >gi|158336565|ref|YP_001517739.1| 16S ribosomal RNA methyltransferase RsmE [Acaryochloris marina MBIC11017] gi|158306806|gb|ABW28423.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 263 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 8/238 (3%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + L+RL + Q + DQ HYL VLR+ GD + NG+ W++++ + Sbjct: 6 AQLQRLAIAPEQLQDHQIHLTSDQQHYLCDVLRLGHGDRFIAMNGQGQLWVAELQPDARF 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 R +++ + + +P K N D +++ E+G+ I P+I++ T + + Sbjct: 66 AR-RLKALGEQTELAMPMMLLAAPPKGNHFDQVVRSVTELGVSYIVPLISQRTLLKPSSN 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKL 181 + R + AAEQ +P + P + E + D Q + N L L Sbjct: 125 RIQRWQRIATEAAEQSHRQIIPKVLDPASFEKTVMQDDQGDWQRYICTVEPSAPNFLHCL 184 Query: 182 HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + VA+++GPEGG+ E + + + +SLG R LR+ TA A+++ Sbjct: 185 SQALDQESQSGVAVMVGPEGGWTETETQQAQTAGY-QAVSLGQRTLRAVTANYMAVSI 241 >gi|297621017|ref|YP_003709154.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297376318|gb|ADI38148.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 241 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 14/239 (5%) Query: 7 LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R ++D PL + ++ G + H+LAHV R + G+ + L NGK ++++ + K+ Sbjct: 1 MPVDRFYLDSPLELDSRIAIGGQELHHLAHVSRARAGEEVELINGKGTLAVAEVLEIKKN 60 Query: 65 IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 + + + S+ + + + + NRLD +++K E+GM +R + ++ Sbjct: 61 EASLLIHSTISEKPSAFPIIIAQAIPRPNRLDTIVEKCTELGMDELRLFPGKLSEKKDLK 120 Query: 124 ---MDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R+ ISAA+Q L +P I YPP + K + + F D + + Sbjct: 121 ESQLARLTKIAISAAKQSGRLFIPSITFYPPIS-----KWPPSDIPLYFGDLSDNAPLFF 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ + +A +IGPE G H EE L L + + L ILR+DTA + A++L+ Sbjct: 176 KRWNTSPPKQGIAFVIGPESGLHEEEVLQLEKLHAI-GVKLHQNILRTDTAPLTALSLI 233 >gi|72161244|ref|YP_288901.1| hypothetical protein Tfu_0840 [Thermobifida fusca YX] gi|71914976|gb|AAZ54878.1| Conserved hypothetical protein 46 [Thermobifida fusca YX] Length = 248 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 10/244 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 V+ G + + A V R+ G+ + L +G ++ VG+ I Sbjct: 6 FLVEPAALDSDPVVVDGAEGRHAATVRRIAVGEPVDLVDGAGHRARCVVTAVGRDTITCA 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V+ + + + + + K +R + ++ E G+ A+ P Sbjct: 66 VQERVFEAEPRPRITVVQALPKGDRGELAVEVMTEAGVDAVVPWQAERCITRWRGDRVAR 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKL 181 ++ + R+ +AA+Q +P + P ++ + IV +E + L Sbjct: 126 SLTKWRSAARAAAKQSRRSRIPEVAEPVGKAGVVALLESATLGIVLHEEGAVRLSQLPLP 185 Query: 182 HAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + +++GPEGG+ E + L LGP +LR+ TA VAA+A++QA Sbjct: 186 EELFGPAGHAVLVVGPEGGFSDAELAAFEDAGALRAL-LGPTVLRTSTAGVAALAVLQAR 244 Query: 241 CGDW 244 CG W Sbjct: 245 CGRW 248 >gi|116620083|ref|YP_822239.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Solibacter usitatus Ellin6076] gi|116223245|gb|ABJ81954.1| protein of unknown function DUF558 [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 14/227 (6%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIR 66 +R FVD + GD+ +L VLR++ G + + + +L++I+ G+ + Sbjct: 4 RRFFVDA--IRNGAAELRGDEARHLTRVLRVESGQRFEISDNQ-HAYLAEIAEAKGERVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----TH 121 F+V + + +K +R ++MI+K+ E+G+ I PV T+ + Sbjct: 61 FRVLEAIAPVPMPVRITLCAAIVKFDRFEWMIEKATELGVERILPVEATRTERGLFEASR 120 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +R +++Q + +P I P LE LK + + G+ L + Sbjct: 121 KRSERWTRIARESSQQSRRVQIPEILPAVRLEECLKETAEHRYFL----DEGAAPPLVRE 176 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 VA+LIGPEGG+ E+ S + P+SLGP +LR++T Sbjct: 177 IPAERSDTVALLIGPEGGWTEAERGLAVSAGWC-PVSLGPLVLRAET 222 >gi|297566407|ref|YP_003685379.1| hypothetical protein Mesil_1997 [Meiothermus silvanus DSM 9946] gi|296850856|gb|ADH63871.1| protein of unknown function DUF558 [Meiothermus silvanus DSM 9946] Length = 232 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 14/223 (6%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR--FKVEYQSRSQTKQ 79 +G + H+LA VLR + GD + +F+G+ E + + V + E S+ Sbjct: 15 LTLTGREAHHLADVLRARPGDAVTVFDGEGLEGRAVVRSVEDGVVELEVTETWPASREVP 74 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAE 136 V + +K ++L +++ + E+G I P++ ++ + + R+R + AA+ Sbjct: 75 VPVVLYVALLKGDKLADVVRAATELGAIKIIPLVCVHSVAKEMGEGKLLRLRRVALEAAK 134 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 Q + T+P + P L + +V +L + VAI GP Sbjct: 135 QSERTTIPEVLAPIPLSAI---PPVEQGLVAHP-----GGTLRVRDILELSRPVAIATGP 186 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EGG+ +E + L F TP++LG RILR++TA +A ++LV A Sbjct: 187 EGGFSEDEMQILLERGF-TPVTLGRRILRAETAPLALLSLVTA 228 >gi|194334810|ref|YP_002016670.1| 16S ribosomal RNA methyltransferase RsmE [Prosthecochloris aestuarii DSM 271] gi|194312628|gb|ACF47023.1| protein of unknown function DUF558 [Prosthecochloris aestuarii DSM 271] Length = 245 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 17/241 (7%) Query: 10 LFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 LF P CI + G+++ ++ VLR EG ++ L +G + I + K + Sbjct: 3 LFYTPPECIDLTARTLVVEGEEFFHIVRVLRRTEGQSLHLTDGCGLSINAVIDSIDKGRL 62 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + + ++V S +K+ R D+ ++K+ E+G+ +I P++T T + Sbjct: 63 NASIASFQHIEPPATEVTVAISLLKSAQRFDFFLEKATELGVTSIIPMVTSRTVSQPRGE 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R + I+A+ Q +LP I P +L + + E+ S+ Sbjct: 123 KVQRKVERWKKVLIAASIQSKRYSLPDICEPRCFGEVLSEGGSYDERLIPYESSCQSPSV 182 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +IG EGG+ E + F T +S G ILR++TAAV A+A+ + Sbjct: 183 AL-----AGRKTLFVIGGEGGFSETEVQQAKDSGF-TEISFGSSILRAETAAVFAVAMAR 236 Query: 239 A 239 A Sbjct: 237 A 237 >gi|289450255|ref|YP_003475043.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184802|gb|ADC91227.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 246 Score = 192 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 26/253 (10%) Query: 7 LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +K++ ++ L Q H+L +V R G+ +LL + + S++ GK+ Sbjct: 1 MKKVRLEVDLDEGWQQISLDAAARHHLCNVQRALSGEKVLLVDKSGRRFFSEL---GKNG 57 Query: 66 RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 K + T+ V I K ++ ++++QK VE+G P+ + + + Sbjct: 58 CVKRMGDCLADTEPPYRVYLIQGMPKGDKWEFILQKGVELGATDFYPLNLQRSIARVKKE 117 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175 + + R +AA Q P I+P T L+ L + ++V +E E Sbjct: 118 DLSKKVIRWNKIIAAAALQSGRTGCPIIHPVTDLKACVAELALLPNTLRVVAWEE----E 173 Query: 176 NSLEKLHAIAH-------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 SL AI+ ++ I+IGPEGG ++E L F +SLG RILR++T Sbjct: 174 RSLSLADAISDYRKHCGIPEHICIVIGPEGGLAADEIGVLKESGF-QVVSLGRRILRTET 232 Query: 229 AAVAAMALVQAIC 241 A + A+A + Sbjct: 233 AGIMALANLTYEF 245 >gi|312793761|ref|YP_004026684.1| hypothetical protein Calkr_1578 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876840|ref|ZP_07736817.1| protein of unknown function DUF558 [Caldicellulosiruptor lactoaceticus 6A] gi|311796355|gb|EFR12707.1| protein of unknown function DUF558 [Caldicellulosiruptor lactoaceticus 6A] gi|312180901|gb|ADQ41071.1| protein of unknown function DUF558 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 243 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 33/255 (12%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + FV+ + + +++ VLR +EGD I L +G + ++ S+I + K Sbjct: 1 MPIFFVEKQNVENDIAYITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKNR 59 Query: 65 IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118 I+ +E ++ + + ++ IK ++D+++QK+ E+G+ I PV+++ ++ Sbjct: 60 IKLLIENKTLNDRESIKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISE 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R A +QC P I P + + + + I+ E Sbjct: 120 KQEKKVERWLKIAQEAQKQCLRPVPPLIEMPIRISEIKEKYLDKLDILLVPYE--KEFGT 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKET-----------LHSLPFVTPLSLGPRILRSD 227 K + + N+ IL L + V +SLG RILRS+ Sbjct: 178 AKWNLSSDYNNIGIL-----------IGPEGGFEEEEIEDLKTFKNVQVISLGKRILRSE 226 Query: 228 TAAVAAMALVQAICG 242 TA++AA++++ G Sbjct: 227 TASIAALSILMHELG 241 >gi|94970268|ref|YP_592316.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Koribacter versatilis Ellin345] gi|94552318|gb|ABF42242.1| protein of unknown function DUF558 [Candidatus Koribacter versatilis Ellin345] Length = 234 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 10/223 (4%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 +G +LA VLR + G + G I+ + + + T Sbjct: 13 GDTAALTGTNAAHLARVLRARVGQQFDISLGT-HIRRGTITSIAEDRVEFTLGEELPSTA 71 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTIS 133 + + + K +RL++ I+K E+G+ I PVI R T+ + ++R R + Sbjct: 72 ITPISLYLAVFKFDRLEWAIEKCTELGVAKIIPVIARRTEPHLAASAAKRVERWRRIALE 131 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 AA+Q P I P L+ L+ +IV A ET + L A V++ Sbjct: 132 AAQQSRRAAPPEITEPVKLKQTLEAV--GQRIVLA-ETEQQNMLRDVLEASEQSREVSLA 188 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 IGPEGG+ +E + SLGP ILR++TA+++A+A+ Sbjct: 189 IGPEGGWTDDELTQFDQSGWQRA-SLGPTILRAETASISAVAI 230 >gi|75764072|ref|ZP_00743673.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488442|gb|EAO52057.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 221 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 13/220 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 ++R FV+ + + + GD H++A V+RM GD I + I + Sbjct: 1 MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 VE+ S V K ++L+ + QK E+G A P + + Sbjct: 60 NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175 ++R+R AAEQ +P ++ P + + LL + A E + Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179 Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 N + L + + I+ GPEGG EE L V Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKXV 219 >gi|320450557|ref|YP_004202653.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01] gi|320150726|gb|ADW22104.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01] Length = 228 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 14/224 (6%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 G + +L VLR K GD +F+ D E L+++ +G +R+++ + R + Sbjct: 8 SPGLTGVLPLRESRHLLEVLRAKVGDRFTVFD-VDREALAEVVELGPPVRYRILEERRPE 66 Query: 77 TKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTI 132 + +V + +K ++L +++ + E+G I+P++TR++ + + R++ + Sbjct: 67 REVGVEVALYPALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLKRLQAIAV 126 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA+Q L +P + PP L L K V G+ + + ++ + ++A+ Sbjct: 127 EAAKQSGRLRVPEVLPPIPLNALPKVEQGMVAHV------GARSLVREVLDL--GKSLAL 178 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +GPEGG+ EE E L F TP+ LG RILR++TAA+A +AL Sbjct: 179 AVGPEGGFAEEEVELLQEKGF-TPVFLGRRILRAETAAIALLAL 221 >gi|148242549|ref|YP_001227706.1| hypothetical protein SynRCC307_1450 [Synechococcus sp. RCC307] gi|147850859|emb|CAK28353.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 252 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 114/242 (47%), Gaps = 12/242 (4%) Query: 4 HSHLKRLFVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L+R+ + P + + + D+ HYL VLR++ G + +G+ G +++ Sbjct: 1 MAELRRILI-TPQRLAGCGQDVELTSDERHYLEKVLRLRPGSPFAIVDGQGGLHQAELRS 59 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--Q 118 G + + Q Q + + + I+ + + +++ + E+G+ +RP+ + + + Sbjct: 60 NGWAQQGACVEQQPPQQLE--LVLLMGLIRRD-FEVVVRMTCELGLDQLRPLQAQRSVVE 116 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSEN 176 + R ++ A EQC+ L LP ++P ++ L + + G Sbjct: 117 SKGQRPQRWQSQLQEACEQCERLWLPQLHPVSSAIDGLSQAKSAGELRCIGVTREAGVPL 176 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 E L A + + GPEGG+ +E++ + + P+SLGP ILR+ TAA++ +A+ Sbjct: 177 LAEVLEAASPTQRWQLACGPEGGWTDDERQAAAAHGW-QPVSLGPNILRASTAAISGLAV 235 Query: 237 VQ 238 +Q Sbjct: 236 MQ 237 >gi|254442333|ref|ZP_05055809.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae bacterium DG1235] gi|198256641|gb|EDY80949.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae bacterium DG1235] Length = 255 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 17/251 (6%) Query: 7 LK--RLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + R D + Q + S D+ ++L R + GD + +F+GK E +++S K Sbjct: 1 MPDFRCHCDTSAFALDGQIELSPDESNHLIAANRARVGDPVRVFDGKGNEGNARVSVANK 60 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 K+E + + K ++ +I+K+ E+G+ I P+ITR + Sbjct: 61 RRAVLKIESICTLPPPPYQIALAQALPKGKLIETIIRKATEIGIQQIFPLITRRVELKIE 120 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + T+ A+Q L I P L LL + + A T + + Sbjct: 121 PKKEDSKNAKWTAATLEGAKQSGNPHLLKIEPICDLNSLLNQSEGFDLKLIASLTTDTTS 180 Query: 177 SLEKL------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 ++L H + +V L+GPEG + EE + + F+ P +LG ++RS+TAA Sbjct: 181 LKKQLERYQSEHNGSSPKSVLWLVGPEGDFTPEETQISINAGFL-PTTLGRYVMRSETAA 239 Query: 231 VAAMALVQAIC 241 A+++ Q Sbjct: 240 THALSITQYEL 250 >gi|283781126|ref|YP_003371881.1| hypothetical protein Psta_3357 [Pirellula staleyi DSM 6068] gi|283439579|gb|ADB18021.1| protein of unknown function DUF558 [Pirellula staleyi DSM 6068] Length = 236 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 10/227 (4%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R FVD PL +GD+ +L V+R K GD ++LF+G E + I K Sbjct: 1 MPDRYFVDKPLAAGIAI-IAGDEARHLVGVMRAKLGDEVVLFDGCGHEADATIEKTAKER 59 Query: 65 IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121 + +VE + S + + K +R ++++K VE+G A+ P+ T Q Sbjct: 60 VELRVETVRDVPREFASQLTLAVALPKGDRQKWLVEKLVELGCDALLPLETDRGVAQPVE 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R++ + A++Q L I P + + L + Q F G SL++ Sbjct: 120 SAIERLKRGVLEASKQSGRALLMRIEAPASSDTLFSAATVHNQPCFIAHPGGC--SLDQA 177 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + N IGPEGG+ E + F +SLGP ILR +T Sbjct: 178 WDQSSG-NALFAIGPEGGFSDREVQLAEQAGFQK-VSLGPTILRIET 222 >gi|318061224|ref|ZP_07979945.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp. SA3_actG] gi|318076106|ref|ZP_07983438.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp. SA3_actF] Length = 251 Score = 191 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 11/245 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL G + + V R++ G+ I+L +G+ ++ R Sbjct: 9 PRL--AEEAVPGGVFVLDGPEGRHAVSVKRLRPGEEIVLSDGEGRWAPCVVTAAEGKDRL 66 Query: 68 KVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQN 119 VE + + + K +R + ++ E G+ AI P Sbjct: 67 SVEVGELREEPLPSPRLVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDR 126 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++ + R A +Q P I + + V E G+ ++ Sbjct: 127 GAKSLAKWRATAREAGKQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPL 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + ++ +++GPEGG EE + + LGP +LR+ TA AA+AL+ Sbjct: 187 ATLPLPDEGDIVLVVGPEGGVAPEEIASFTAAG-AHVCRLGPSVLRTSTAGTAAVALLSG 245 Query: 240 ICGDW 244 G W Sbjct: 246 RTGRW 250 >gi|189219856|ref|YP_001940497.1| hypothetical protein Minf_1845 [Methylacidiphilum infernorum V4] gi|189186714|gb|ACD83899.1| Uncharacterized conserved protein [Methylacidiphilum infernorum V4] Length = 217 Score = 191 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 11/216 (5%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92 +R K GD I +F+GK W +KI + + E + S +K+ + I S +K Sbjct: 1 MRHKIGDLIEVFDGKGSSWEAKIEKIENHQVFVSLLREIKEDSPSKKPLLVLIQSVLKNK 60 Query: 93 RLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 + +++QK E+G+ I PVI++ + + + I+AA+Q LP ++ Sbjct: 61 AMHWLLQKVTEIGVDRIIPVISKRSLSAVEEGQQLKEKKWNEILIAAAKQSHRRKLPELF 120 Query: 148 PPTTLEFLLKN-WDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + L LK + + ++V F + S + + ++ ++ +V ILIGPEG + EEK Sbjct: 121 KISLLADALKEGFPSSLKLVAFLGKEARSLKEVMQCYSSRNVSSVVILIGPEGDFTGEEK 180 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + F+ P+SLG ++LRS+TAA+ +++ Sbjct: 181 NMVLNQGFI-PVSLGNQVLRSETAALFLASVMNYEL 215 >gi|262068260|ref|ZP_06027872.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum ATCC 33693] gi|291377998|gb|EFE85516.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum ATCC 33693] Length = 235 Score = 191 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQ 79 + +++ +V R ++GD + +G + E+L +I + K I+ K+ + + + Sbjct: 15 LVIDVNDINHIKNVFRKEKGDILRAVDGFN-EYLCEIEEISDKEIKLKIIEKKADKFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 + S +K +++D IQK E+G+ I P+ + DR T A +QC Sbjct: 74 VKLDAAISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTIAKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197 + + ++ L ++ I+ E + L + + LIG E Sbjct: 134 QGVVPTVVDEIKKIDKL--DFKDYDLILVPYENEKEVFLKDILRNLKVKPSKILYLIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE E L S +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIEFLESRG-AKIISLGKRILRAETAAIV 225 >gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 [Thermomonospora curvata DSM 43183] gi|268312416|gb|ACY98790.1| protein of unknown function DUF558 [Thermomonospora curvata DSM 43183] Length = 244 Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 12/243 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67 +D + + G + + V R++ G+ + L +G ++ V + Sbjct: 6 FLIDSTALREDRVVLEGPEGRHAVTVRRLRPGERVDLTDGDGLLAECVVAAVAGKDRLVL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +V + R Q + + + K R + ++ E G+ I P Sbjct: 66 EVLARHRHQPPSPRLVVVQALPKGERGELAVETMTEAGVDEIVPWQAARCVTRWRPDRMD 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R RT AA+Q LP I P T E + + + E L + Sbjct: 126 KALGRWRTTAREAAKQSRRSRLPQIPPLATTEQVAARLAGAARAIVLHEAATV--PLRAV 183 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + +A+ +GPEGG EE V + LGP +LR+ TA VAA A++ + Sbjct: 184 DLPSEGEIIAV-VGPEGGITDEELACFAEAGAV-AVRLGPTVLRTSTAGVAAAAILLSAT 241 Query: 242 GDW 244 G W Sbjct: 242 GRW 244 >gi|167947327|ref|ZP_02534401.1| hypothetical protein Epers_12597 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 15/196 (7%) Query: 58 ISYVGKSIRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 IS + ++ R + K S + + R+D+ +QKSVE+G+ AI P++T Sbjct: 1 ISSDRNRVEVELHQCLRKEAKDSLPITLAIGISRGERMDFALQKSVELGVSAIVPLVTER 60 Query: 117 TQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE 170 M + ISA EQ +P + P + +L+ +++ Sbjct: 61 CVVRLDPRRQQKRMTHWQKIVISACEQSGRCRVPQLEQPGRFDEMLQQLPATMRLMLDHR 120 Query: 171 TCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 S LH ++ P+ + +L+GPEGG EE+ F + LGPR+LR++TA Sbjct: 121 ASES------LHDLSSRPDAIVLLVGPEGGLSPEERRLAQQAGF-KGVRLGPRVLRTETA 173 Query: 230 AVAAMALVQAICGDWY 245 +AA+A +Q G Y Sbjct: 174 PLAALAAIQTPVGGLY 189 >gi|110004933|emb|CAK99265.1| conserved hypothetical upf0088 protein [Spiroplasma citri] Length = 239 Score = 190 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 12/241 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65 + R FV + + D + VLR++ I+ NG+ ++ K Sbjct: 1 MHR-FV-ANQLEENYFILAEDDVKQIKQVLRLRNQTQIICIYNGEHYLTTLEVQSPQKYA 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 ++ ++ V+ I I+ + DY++QKS E+G+ I P +N Sbjct: 59 FKLIKKLEQNHESPITVRLIAGLIRNTKWDYLLQKSTELGVNEIIPFQFSRCVVQLKGEN 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R A EQ +P + + +L+ + + +V ++ + + + Sbjct: 119 NFKKIERWTKICKEATEQSYRNQVPLVNDVESDLKVLQKYQSDVNLVCYEKVVETLSIKQ 178 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + I+IGPEGG+ E L S + P+SLG RILR++TA+VA +A++ Sbjct: 179 FLQQ--DFKTITIVIGPEGGFTPNEIAVLSSYHYY-PVSLGQRILRAETASVALLAMIMY 235 Query: 240 I 240 Sbjct: 236 E 236 >gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit methyltransferase E [Pseudonocardia dioxanivorans CB1190] gi|326952950|gb|AEA26647.1| Ribosomal RNA small subunit methyltransferase E [Pseudonocardia dioxanivorans CB1190] Length = 248 Score = 190 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 12/243 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 LF+ L G + + A V R++ G+ I L +G+ G + + VG+ + + Sbjct: 6 LFLVDELPAGPDAVLDGPEGRHAATVRRLRPGEEITLADGRGGLARAVVDTVGRDRLDVR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121 V ++ + V + +K R + ++ + E G+ AI P Sbjct: 66 VLDRAELEPPTPRVTLAQALVKGERGELAVELATEAGVDAILPWRAARCVVRWEDGARGD 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R R SAA+Q +P + P + L + + E+ +E L Sbjct: 126 RALARWRATVRSAAKQARRAWVPEVGAPVSTRELAALCPTFDRALVLHES-ATEGLASGL 184 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 V +++GPEGG EE L + + LGP +LR+ TAA A+ + A+ Sbjct: 185 SGA--PAEVLLVVGPEGGVADEEIAMLTAAG-ARAVRLGPEVLRASTAAAVALGAIGALT 241 Query: 242 GDW 244 W Sbjct: 242 SRW 244 >gi|283769587|ref|ZP_06342483.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219] gi|283103855|gb|EFC05241.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219] Length = 235 Score = 190 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 15/238 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65 + + F + +Q H+ HVL + + + + L +GK ++ + G+ Sbjct: 1 MHQYFCQTKPIVGQTYTLLKEQEHHAHHVLHL-DHEVLRLVYDGKAFFAIATVID-GQFQ 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 F + + ++ + I+ + ++++QK+ E+G+ I P + T Sbjct: 59 CFVEKEDLFVNELEQEITLCMALIRKEKFEWVLQKATELGVKKIVPFTSSRTIVKVQKEK 118 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 R + A++QC +P + L+ LKN+ +V A+ET E++ Sbjct: 119 EMKMKKRYGQIVLEASQQCKRNYIPEVLEVVHLDD-LKNYQSEDNVV-ANETKHQEHTFF 176 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L N I+IGPEGG+ SEE L + F +SLG RILR++TAA+ A+++V Sbjct: 177 DL---KTKKNTTIVIGPEGGFSSEEIVKLEKMGF-RSISLGNRILRAETAAIFAVSVV 230 >gi|108804350|ref|YP_644287.1| hypothetical protein Rxyl_1513 [Rubrobacter xylanophilus DSM 9941] gi|108765593|gb|ABG04475.1| protein of unknown function DUF558 [Rubrobacter xylanophilus DSM 9941] Length = 242 Score = 190 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 11/237 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R+F+ L + ++ H+L VLR G+ + +++++ G S Sbjct: 1 MTRVFLGERLEAGGRFVLPREEDHHLRRVLRAGPGERFEAVDAAGRLFMAELRE-GASAE 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNM 124 + ++++V + K R+D +++K+ E+G+ I P++ + + Sbjct: 60 AVELLREAGAEERAEVWLYQAVPKGKRMDLVVEKATEVGVAGIAPLVCERSVVRPGDNKV 119 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R R SAA Q L +P + P ++ ++ + L+ L Sbjct: 120 ERWRRIAESAARQALRLRVPEVREPVAFREAVREVGGRGVLLH------NGPGLDPLEER 173 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A VA+L+GPEGG+ E E ++ LGP LRS+TA V A+A ++A+ Sbjct: 174 ARGA-VALLVGPEGGWSGAEIEEALRCG-LSLAQLGPFRLRSETAGVVAVARMRAVL 228 >gi|169156681|emb|CAQ01839.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 233 Score = 190 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 13/233 (5%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDV 82 +G + + V R++ G+ IL+ +G+ ++ + + +V+ V Sbjct: 2 LAGQEARHAVTVSRVRSGEGILVGDGRGTIASGTVTSAEPQRLELRVDAVEAHPEPSPRV 61 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + + K +R + +Q + E+G+ A+ P + + Q DR R AA+ Sbjct: 62 VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAAK 121 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVF-----ADETCGSENSLEKLHAIAHIPNVA 191 Q +P + P T + L++ +V A+ + +V Sbjct: 122 QSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTAEARLSRLDLAAADGDADAATDVL 181 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG E E L + P++LG ILR+ TA AA+ALV A G W Sbjct: 182 LVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGLGRW 233 >gi|317052435|ref|YP_004113551.1| hypothetical protein Selin_2275 [Desulfurispirillum indicum S5] gi|316947519|gb|ADU66995.1| protein of unknown function DUF558 [Desulfurispirillum indicum S5] Length = 243 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 17/245 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFK 68 +D L + + G+ +H+L VLR GD + +L GK + +I+ + Sbjct: 3 FLIDQALIGQDSCRIEGEDFHHLRRVLRKNIGDPVDILSTGK-VRYRGRITAMADDSAAI 61 Query: 69 VEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + +S +Q + IK + ++ E+G I ++ + Sbjct: 62 SLSDPIAHETESSLQLTIACAAIKGDAFFDNVRMFCELGAHRIVVFVSENCVVQYDEKRA 121 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGSENSL 178 ++++ + +Q P I P TT E LL W +I+ + SL Sbjct: 122 QRKREKMQRIVNESCKQNLRTCPPAIDPLTTFEQLLSDDQWLPRQKILCYEGAREPIASL 181 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +I + ++IGPEGG E + + +SLGPRIL++ TA VAA+++VQ Sbjct: 182 ----SIDTGQPLLLMIGPEGGISQREAQKARMCG-IQMVSLGPRILKASTAQVAALSIVQ 236 Query: 239 AICGD 243 GD Sbjct: 237 HRFGD 241 >gi|317970157|ref|ZP_07971547.1| hypothetical protein SCB02_11506 [Synechococcus sp. CB0205] Length = 248 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 19/253 (7%) Query: 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI---- 58 + L+RL + P + +Q + ++ YL VLR GD + NG+ W + + Sbjct: 1 MARELRRLLI-APERLASQIALTREEERYLTRVLRFSAGDRFAVVNGQGALWTAVLRQSA 59 Query: 59 -SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + +S+ +E+Q + + +K + + +++ +VE+G+ P++ T Sbjct: 60 CAELEQSLEAPLEHQ---PAPAPQLVLAAAVVKRD-FEVVLRMAVELGVDRFIPLLCERT 115 Query: 118 Q-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R R+ AAEQC+ L P I P + LL D +A Sbjct: 116 VVQGSLRLERWRSIAAEAAEQCERLWSPRIEEPMDVHQLLGLRDSAVPGFWATTRQQELP 175 Query: 177 SLEKLHA---IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L + A + + ++ + GPEGG+ E++ + + P+ LGPRILRS TA V+ Sbjct: 176 LLASVLADQPLERLSSLWLACGPEGGWSPSEEQAAEAAGW-KPVDLGPRILRSSTACVSG 234 Query: 234 MALVQ----AICG 242 ++ + A CG Sbjct: 235 LSSLSSARVARCG 247 >gi|313680577|ref|YP_004058316.1| hypothetical protein Ocepr_1690 [Oceanithermus profundus DSM 14977] gi|313153292|gb|ADR37143.1| protein of unknown function DUF558 [Oceanithermus profundus DSM 14977] Length = 233 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 16/232 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 R+FV I + +G + H+L HVLR++ G +++F+G E +++++ G Sbjct: 2 RKPRVFVP---RIDPEIVLAGGEAHHLLHVLRVRPGREVVVFDGAGLEAEARVTHAGGGA 58 Query: 66 RFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNT 120 + R+ ++ + + +K ++L +++ E+G+ P++T + + Sbjct: 59 VRLAAGEPRAVRREPPLAPVLYVALLKGDKLADVVRAGSELGVVRFVPLVTERSVPREMG 118 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R+R + AA+Q LP + PP L L+ D +V + + Sbjct: 119 RAKLERLRRIAVEAAKQSGRSRLPEVAPPRAL-AALEPVDFG--LVAHPGAARTLAEV-- 173 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 A A+ GPEGG+ E L L F P+ LGPRILR++TA + Sbjct: 174 --AWPEAGEAALASGPEGGFTEAEVAHLAGLGFA-PVYLGPRILRAETAPLV 222 >gi|260494170|ref|ZP_05814301.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260198316|gb|EEW95832.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 235 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQ 79 +++ +V R +GD I +G + E+L +I + K I+ K+ E + + Sbjct: 15 LVVEASDINHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 +V S +K +++D IQK E+G+ I P+ + DR T + A +QC Sbjct: 74 IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197 + I ++ L N I+ E + L + P + +IG E Sbjct: 134 QGVVPTVIDEIKKIDKL--NLKDYDLILVPYENEKKIFIKDILRNLKVKPTKILYIIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225 >gi|288904368|ref|YP_003429589.1| hypothetical protein GALLO_0147 [Streptococcus gallolyticus UCN34] gi|306830400|ref|ZP_07463570.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977364|ref|YP_004287080.1| ribosomal RNA small subunit methyltransferase E [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731093|emb|CBI12639.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427425|gb|EFM30527.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177292|emb|CBZ47336.1| ribosomal RNA small subunit methyltransferase E [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 247 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV D ++ +V+R+ E D ++L + L+K+ + Sbjct: 1 MQQYFV-AGQAQDVVTITDKDTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEHRF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + +V K ++L+++ QK E+GM + V+ + Sbjct: 60 EIIEELDSNVELPVEVTIAAGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 D++ T+ AAEQ ++P + L + +I A E E Sbjct: 120 AKKADKLAKITLGAAEQSKRNSIPEVTLFEKKAAFLAELEQFDRIFIAYEESAKEGETAV 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + GPEGG EE ET S + + LGPRI+R++TA + A+A Sbjct: 180 LARELSQMKAGEKILFIFGPEGGISPEEIETFESKGGLK-IGLGPRIMRAETAPLYALAS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|254302941|ref|ZP_04970299.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323133|gb|EDK88383.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 235 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 8/209 (3%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQSDVQYI 85 +++ +V R +GD I +G + E+L +I + K I K+ ++ + + +V Sbjct: 21 DINHIKNVFRKVKGDKIRAVDGTN-EYLCEIEKIEDKEIELKILEKTEDKFSLDIEVDAG 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144 S +K +++D IQK E+G+ I P+ + DR + A +QC + Sbjct: 80 ISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWEIISKEALKQCQGVVPT 139 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSE 203 I ++ L N+ I+ E E + + +IG EGG+ E Sbjct: 140 VIDEIKKIDKL--NFKDYDLILVPYENEKEIFIKEIFRDLKIKPTKILYIIGAEGGFEKE 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E L +SLG RILR++TAA+ Sbjct: 198 EINYLKENG-AKIISLGKRILRAETAAIV 225 >gi|333027170|ref|ZP_08455234.1| putative RsmE family RNA methyltransferase [Streptomyces sp. Tu6071] gi|332747022|gb|EGJ77463.1| putative RsmE family RNA methyltransferase [Streptomyces sp. Tu6071] Length = 251 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 11/245 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL G + + V R++ G+ I+L +G+ + R Sbjct: 9 PRL--AEEAVPGGAFVLDGPEGRHAVSVKRLRPGEEIVLSDGEGRWAPCVVKAAEGKDRL 66 Query: 68 KVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQN 119 VE + + + K +R + ++ E G+ AI P Sbjct: 67 SVEVGELREEPVPSPRLVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDR 126 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++ + R A +Q P I + + V E G+ ++ Sbjct: 127 GAKSLAKWRATAREAGKQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPL 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + ++ +++GPEGG EE + + LGP +LR+ TA AA+AL+ Sbjct: 187 ATLPLPDEGDIVLVVGPEGGVAPEEIASFTAAG-AHVCRLGPSVLRTSTAGTAAVALLSG 245 Query: 240 ICGDW 244 G W Sbjct: 246 RTGRW 250 >gi|116070640|ref|ZP_01467909.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107] gi|116066045|gb|EAU71802.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107] Length = 244 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 10/235 (4%) Query: 1 MKIHSHLKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 M+ L+RL + + ++ K D+ HYL VLR++ GD + + +G W +++ Sbjct: 1 MR---ELRRLLIPPDRFVGSELIKLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAELV 57 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ- 118 +++ + Q + S I+ D +++ + E+G+ I+P+ T Sbjct: 58 D-EHTVKTDPTPCEQLVQPQPPLGLAVSIIRRG-FDDVVRMACELGIDTIQPLRCERTVL 115 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + DR T A EQC+ L P + +LE L + + V T E Sbjct: 116 QAEHRPDRWNTIVREAVEQCERLWKPTVLELNSLESWLDSSSGQ-KAVGVTRTKKLEPLG 174 Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + L IA +++GPEGG+ S E++ LH+ V P+ LGP ILR+ TAAVA Sbjct: 175 DWLEQIAIPAQTTWLIVGPEGGWTSAERDALHNHS-VAPIHLGPSILRTSTAAVA 228 >gi|256027910|ref|ZP_05441744.1| putative cytoplasmic protein [Fusobacterium sp. D11] gi|289765859|ref|ZP_06525237.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289717414|gb|EFD81426.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 235 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQ 79 +++ +V R +GD I +G + E+L +I + K I+ K+ E + + Sbjct: 15 LVVEASDINHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 +V S +K +++D IQK E+G+ I P+ + DR T + A +QC Sbjct: 74 IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197 + I ++ L N I+ E + L + P + +IG E Sbjct: 134 QGVVPTVIDEIKKIDKL--NLKDYDLILVPYENEKKVFIKDILKNLKVKPTKILYIIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225 >gi|238809922|dbj|BAH69712.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 232 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 20/241 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M + + R FV + + S + +++ V R+++ + L N +D + K+ Sbjct: 1 MNERNKMHRFFV-TKKSDQDHFELSKEILNHI-KVARVEKDE--FLCNYQDIFYKCKLE- 55 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + +E + + IK R ++++QK+ E+G+ I P ++YT Sbjct: 56 --NNKALIIEKLDINHEFNKPIILAAPIIKIKRFEWILQKATELGVTTIIPFASKYTDAK 113 Query: 121 HYNMD------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + R +AAEQ +P++ LE ++K + + + Sbjct: 114 ILKYEFNSKQNRFNEIIKNAAEQSFRNIIPYLTKIMNLEEIIKTYPTMQKYLAY------ 167 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 EN +K + I + + +++GPEGG+ EE E + SLG ILR++TA + + Sbjct: 168 ENQDQKNNIITYPTSSILIVGPEGGFSPEEIELAKENN-IKITSLGKTILRAETACLYML 226 Query: 235 A 235 A Sbjct: 227 A 227 >gi|295838961|ref|ZP_06825894.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74] gi|197695517|gb|EDY42450.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74] Length = 251 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 11/245 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 RL G + + V R++ G+ ++L +G ++ R Sbjct: 9 PRL--AEEAVPGGVFVLDGPEGRHAVSVKRLRPGEELVLSDGAGRWAPCVVTAAEGKDRL 66 Query: 68 KVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 VE + + + K +R + ++ E G+ A+ P + Sbjct: 67 SVEVGELREEPVPSPRLVVVQALPKGDRGELAVETMTETGVDAVVPWQAERCVTQWRGER 126 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++ + R A +Q P + + + V E G+ ++ Sbjct: 127 GAKSLAKWRATAREAGKQSRRPRFPEVAEAVSTKEAAALLSRAALAVVLHEDAGTASTPL 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + ++ +++GPEGG E + LGP +LR+ TA AA+AL+ Sbjct: 187 ATLPLPPSGDIVLVVGPEGGVAPAELTAFTAAG-AHVCRLGPSVLRTSTAGTAAVALLSG 245 Query: 240 ICGDW 244 G W Sbjct: 246 RTGRW 250 >gi|304439565|ref|ZP_07399470.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371944|gb|EFM25545.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 227 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 15/216 (6%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83 S + H+L +V+R+ + + + + + + + S + + Sbjct: 12 LSEENRHHLLNVVRLNPDEEFEIVS-SGKVYRA----IYDGELKILREVENSHETRLRIN 66 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQC 138 + IK ++ + ++K+ E+G+ +I P+I + T + R + SAA+Q Sbjct: 67 LYMALIKQDKFELALEKTTEVGVSSITPIIFKRTVVNIKGKEDKKLLRWQKILESAAKQS 126 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P I P LE N + ++ E + + L I ++ILIGPEG Sbjct: 127 KRDIIPSINNPEKLE----NINFKGTLIVPYEGAENLYIDDVLKNTKGIEEISILIGPEG 182 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 G+ E E L ++ ++LG RILR++TAA+ A Sbjct: 183 GFDESEIEYLKTMG-CKIVTLGTRILRAETAAIVAC 217 >gi|237744246|ref|ZP_04574727.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431475|gb|EEO41687.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 235 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQ 79 +++ +V R +GD I +G + E+L +I + K I+ K+ E + + Sbjct: 15 LVVEASDINHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 +V S +K +++D IQK E+G+ I P+ + DR T + A +QC Sbjct: 74 IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197 + I ++ L N I+ E + L + P + +IG E Sbjct: 134 QGVVPTVIDEIKKIDKL--NLKDYDLILVPYENEKKIFIKDILRNLKVKPTKILYIIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDYLKESG-AKIISLGKRILRAETAAIV 225 >gi|298243472|ref|ZP_06967279.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM 44963] gi|297556526|gb|EFH90390.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 98/256 (38%), Gaps = 23/256 (8%) Query: 7 LKRLFVDFPLCI-------KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI- 58 + R F++ + H + VLR+ + ++L + E L + Sbjct: 1 MHRFFIEEAQVEPALLRQKGMAILLPENVAHQVRDVLRLALDERLVLLDNSGEETLCAVK 60 Query: 59 -SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 S G+ + +E Q +V +K+ R +++++K E+G+ P + + Sbjct: 61 KSARGEVVVEVLERQRGKSESPVEVMLCQGMLKSARFEWILEKGTELGVSTFLPTTCQRS 120 Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + R A+EQC +P + P L +L + + E Sbjct: 121 TTGLEEAGTSKQKRWLRIIQEASEQCGRARVPTLLPVRPLMHVLGDIPEGTLALMPWEEE 180 Query: 173 GSENSLEKLH--------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 ++ L A V + IGPEGG+ +EE ++LG R+L Sbjct: 181 RTQTLRSVLREAMTNYEEAPTQRLRVMLFIGPEGGFMAEEVMMARRHG-AKIVTLGERVL 239 Query: 225 RSDTAAVAAMALVQAI 240 R++TAA+A++A + Sbjct: 240 RAETAAIASIANIMYE 255 >gi|153003145|ref|YP_001377470.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. Fw109-5] gi|152026718|gb|ABS24486.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5] Length = 246 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 13/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L+R+ + + + + HYL VLR+ G + +F+G+ G W +++ ++ Sbjct: 3 LRRVHLPPQRFEGERAALTPEARHYLRDVLRLGPGAEVEVFDGRGGAWAARVDAAYEA-- 60 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + + +++ + + K ++D ++QK+ E+G + P + Sbjct: 61 LLLGERRAQGGAAAEIWLVAALAKGEKMDLVVQKATELGAAGVAPFAAERSVVRLEPDKG 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R R AA QC +P + P L +L + + Sbjct: 121 EERARRWRRIAEEAARQCGRADVPEVRAPAPLAGVLAALPPGALAIAL---QPGGPPVLA 177 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L +A AI +GPEGG E + +LGPR+LR++TAA+ A+AL+QA Sbjct: 178 LEPVAARAYAAI-VGPEGGLTDVELAACDAAGARRA-ALGPRVLRAETAAIVAVALLQAR 235 Query: 241 CGD 243 GD Sbjct: 236 FGD 238 >gi|86156675|ref|YP_463460.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter dehalogenans 2CP-C] gi|85773186|gb|ABC80023.1| hypothetical protein Adeh_0247 [Anaeromyxobacter dehalogenans 2CP-C] Length = 240 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 13/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L+R+ + + + + + HYL VLR+ G + LF+G+ G W + + +++ Sbjct: 3 LRRVHLPPERIGEGRAALTDEARHYLRDVLRLAPGAAVELFDGRGGAWEATVLDGFEALA 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + V + + K ++D ++QK+ E+G I P + + Sbjct: 63 LGARRAAPGGGAP--VWLLVALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKG 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R R AA QC +P + P +LE L + Sbjct: 121 EARAARWRRIAEEAARQCGRADVPEVRAPASLEAALAEVPAGFGAFVFHPGGAPLSEA-- 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A + A ++GPEGG E+E + SLGPR+LR++TAA+ A+AL+QA Sbjct: 179 --APSPAGGYAAVVGPEGGLTDAERE-ACACAGARATSLGPRVLRAETAAIVAVALLQAR 235 Query: 241 CGD 243 GD Sbjct: 236 FGD 238 >gi|325955335|ref|YP_004238995.1| ribosomal RNA small subunit methyltransferase E [Weeksella virosa DSM 16922] gi|323437953|gb|ADX68417.1| Ribosomal RNA small subunit methyltransferase E [Weeksella virosa DSM 16922] Length = 237 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 13/231 (5%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQ 76 + ++ H+ VLR KEGD + + NG+ +IS + K +E Q Q Sbjct: 10 DNHATLNEEESHHFTKVLRGKEGDIVYITNGEGTLAKCEISQLSKKKVEANILEIQENFQ 69 Query: 77 TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135 K + +P K RL++ ++K+ E+G+ I + T +++ + ++R+ +A Sbjct: 70 QKPYYLHVAIAPTKTMERLEFFLEKATEIGIDEITFLQTFHSERRNIKIERIEKIIQAAC 129 Query: 136 EQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 +Q P + + + + I + EN L + ++ Sbjct: 130 KQSLKAYTPKVNSLMKFHDFIDQDYQEFSKVIAHCRDDWDRENFKTYLST--QPSKIILM 187 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 IGPEG + +EE + F +SLG + R++TAA+ A+ V DW Sbjct: 188 IGPEGDFSAEEITSALQKNF-RGVSLGTQRFRTETAALQAVFAV-----DW 232 >gi|145356785|ref|XP_001422606.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582849|gb|ABP00923.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 246 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 19/248 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L R +VD S ++ + LR+K GD + + +G+ ++++ V + Sbjct: 1 LHRFYVDADFARGAAVTLSREETRHATKALRLKPGDRLEVCDGRGTLGIARLCAVD-GVG 59 Query: 67 FKVEYQSRSQTKQ-----SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117 VE + DV F +K R D++++K E+G + P++T + Sbjct: 60 ATVEVEEMVADALGSGTAWDVASAFGGLKGGRGDWLVEKCAELGARTLVPLLTTRSGAIG 119 Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171 R +A++Q + + PP +E L + +C Sbjct: 120 GGDRDGDKKRGREGRWGRVAHAASKQSLRVYGLQVAPPIGVEALCEEIAKDCGERLTLLA 179 Query: 172 CGSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + + + + I+IGPEG + EE + + + P+ LG LR +TA Sbjct: 180 AAGAPPIADVARASGLDLRSGRIVIGPEGDFTDEELKAMIAAG-ARPVGLGSLRLRVETA 238 Query: 230 AVAAMALV 237 A++A+A V Sbjct: 239 AISALAAV 246 >gi|237737740|ref|ZP_04568221.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419620|gb|EEO34667.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 237 Score = 188 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 13/233 (5%) Query: 12 VDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 + ++ + ++L +V R+K + + +G+ E+L +++ + K V Sbjct: 6 ISEENILENKIIIDEKGDVNHLKNVFRVKIDEKVRAVDGE-KEYLCRVAELDKKSVTLVI 64 Query: 71 YQSRSQTKQSDVQY--IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRV 127 + + V+ +K +++D IQK E+G+ I P+ T+ D+ Sbjct: 65 DEIFEDRFSTKVKIDAAIGILKNDKMDLTIQKLTEIGINKIIPLSTKRGVAKVSEKKDKW 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAI 184 A +QC + I T +E L L+++D +V C E +L+ L Sbjct: 125 DLIVREALKQCQGVKPLIIDEVTKIEKLKLEDYD----LVIVPYECEDEYTLKNLLRKQT 180 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +V ++GPEGG+ EE E L ++LG RILR++TA++ ++ Sbjct: 181 KELKSVLYIVGPEGGFDIEEIEYLKQKG-ANIVTLGKRILRAETASIVVGGVL 232 >gi|254422571|ref|ZP_05036289.1| conserved hypothetical protein TIGR00046, putative [Synechococcus sp. PCC 7335] gi|196190060|gb|EDX85024.1| conserved hypothetical protein TIGR00046, putative [Synechococcus sp. PCC 7335] Length = 247 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 9/240 (3%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIR 66 +R+ V + + +Q HYL VLR+ GD + +G+ +WL +S V ++ Sbjct: 3 QRITVTANQLKEECLLLTSEQIHYLRRVLRLNSGDRFIAQDGRGKQWLVMLSDQVDQASI 62 Query: 67 FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 +V S ++ + K N D +++++ E+G+ I P+++ T + Sbjct: 63 EQVISADLSAVGPATGPLRLAAALPKGNSFDQVVRQATELGVTHIYPLMSDRTLLNPSAS 122 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R A+EQC+ T P I+ PTTL+ + + + S + L K+ Sbjct: 123 RLTRWHRIAQEASEQCERATTPEIFSPTTLQQFVIESNWSGIRYICATRQNSPHLLSKIQ 182 Query: 183 ---AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +V +L+GPEGG+ E + +SLG ILR+ TA+V A++LV A Sbjct: 183 HDLVSVGSHDVTLLVGPEGGWTPGEITVATDSGY-EIVSLGTAILRAVTASVTALSLVGA 241 >gi|294785209|ref|ZP_06750497.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27] gi|294486923|gb|EFG34285.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27] Length = 235 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 8/209 (3%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYI 85 +++ +V R +GD I +G + E+L +I + K I+ K+ E S + ++ Sbjct: 21 DINHIKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEINAG 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144 S +K +++D IQK E+G+ I P+ + DR + A +QC + Sbjct: 80 ISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVVPT 139 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203 I ++ L + I+ E + L + P + +IG EGG+ E Sbjct: 140 AIDEVKKIDKL--DLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKE 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E + L +SLG RILR++TAA+ Sbjct: 198 EIDYLKENG-AKIISLGKRILRAETAAIV 225 >gi|237742212|ref|ZP_04572693.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845485|ref|ZP_05550943.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|229429860|gb|EEO40072.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256719044|gb|EEU32599.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] Length = 235 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 8/209 (3%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYI 85 +++ +V R +GD I +G + E+L +I + K I+ K+ E S + ++ Sbjct: 21 DINHIKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEIDAG 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144 S +K +++D IQK E+G+ I P+ + DR + A +QC + Sbjct: 80 ISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDIISKEALKQCQGVVPT 139 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203 I ++ L + I+ E + L + P + +IG EGG+ E Sbjct: 140 AIDEIKKIDKL--DLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKE 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E + L +SLG RILR++TAA+ Sbjct: 198 EIDYLKENG-AKIVSLGKRILRAETAAIV 225 >gi|297559680|ref|YP_003678654.1| hypothetical protein Ndas_0703 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844128|gb|ADH66148.1| protein of unknown function DUF558 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 245 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 96/242 (39%), Gaps = 9/242 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 V+ + G + + A V R++EG+ + L +G+ ++ VG I Sbjct: 6 FLVEAADLAADRVTVDGAEGRHAAVVRRIREGETVDLSDGRGLRARCTVTAVGGDHIVCA 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V + + + + + K +R + ++ E G A+ P Sbjct: 66 VVERREEPAPRPRLTVVQALPKGDRGELAVEMMTEAGADAVVPWAAERCVTRWKGDRAAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + R AA+Q LP + +++ V E S S + Sbjct: 126 ALAKWRATAREAAKQARRARLPEVADLADRTAVVELLAGADLGVVLHEDGASRLS-QLEP 184 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + +V +++GPEGG+ E E + V L LGP +LR+ TA VAA++++QA G Sbjct: 185 PVGQDADVVVVVGPEGGFSDAELEAFDAAGAVRAL-LGPSVLRTSTAGVAALSVLQARTG 243 Query: 243 DW 244 W Sbjct: 244 RW 245 >gi|332526877|ref|ZP_08402970.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax benzoatilyticus JA2] gi|332111319|gb|EGJ11303.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 18/238 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67 RL++D PL + + V R++ G ++LF+G EW +++ +G+S + Sbjct: 4 RLYLDIPLAAGSTLALPPGAARH-VQVRRLQPGHALVLFDGGGAEWPAEVVAMGRSEVTV 62 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +V E Q+ + +R+D +++K+ E+G+ AI+P++ + + Sbjct: 63 RVGEPQAVERELPFAATLAVGMPANDRMDALVEKATELGVAAIQPLVCERSVLRLDGERA 122 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSEN 176 + ++A EQC +P I P L L D +++ + G+ Sbjct: 123 ERKQAHWQAVAVAACEQCGRTRVPRIQPVRPLAAWLGALPAEQDLGTRLLLSPR-PGARP 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 E+L A A L GPEGG +E + LGPR+LR+DTA +A + Sbjct: 182 LAERLPAGAGFCT---LSGPEGGLSPA-EEAAAVAAGFAAVGLGPRVLRADTAPLAVL 235 >gi|306832638|ref|ZP_07465777.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338] gi|304425246|gb|EFM28373.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338] Length = 247 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV D ++ +V+R+ E D ++L + L+K+ + Sbjct: 1 MQQYFV-AGQAQDVVTITDKDTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEHRF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + ++V + K ++L+++ QK E+GM + V+ + Sbjct: 60 EIIEELDSNVELPAEVTIVAGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 D++ T+ AAEQ +P + E L + +I A E E Sbjct: 120 AKKADKLAKITLGAAEQSKRNVIPEVTLFEKKEAFLAELEQFDRIFIAYEESAKEGETAV 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + GPEGG EE ET + + LGPRI+R++TA + A+A Sbjct: 180 LARELSQMKAGEKILFIFGPEGGISPEEIETFELKGGLK-IGLGPRIMRAETAPLYALAS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|46447268|ref|YP_008633.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila UWE25] gi|46400909|emb|CAF24358.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila UWE25] Length = 240 Score = 187 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 12/238 (5%) Query: 7 LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 + R F + + +++H+LAHV+R K+G+ + L NGK + + + K Sbjct: 1 MPAERFFTSEEISLHQHVLLKDNEFHHLAHVMRAKKGERVELVNGKSILAQATVLDIHKG 60 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 +++ + S + + +K +RL ++++K E+G+ + + Sbjct: 61 QAVLLIDHIKTERMDSSRLILAQAYVKPDRLAFILEKGTELGVDEFWLFPGQLSSQKEIY 120 Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +R ++ I+A +QC LTLP I + L WD F + L Sbjct: 121 PHQQERAQSLIIAAMKQCGRLTLPKIL----FKPALNQWDSIFSQAFFGDLDPHAPFLAA 176 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + P + GPE G+ E++ L + V + L ILR+DTA++AA++++Q Sbjct: 177 ANEGSSYP-IIFFTGPESGWSDAERQQLKKMG-VQGVRLHTNILRTDTASIAALSIIQ 232 >gi|289676397|ref|ZP_06497287.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae FF5] Length = 180 Score = 187 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 9/175 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++ Q + + + R+D+ IQK+ E+G+ I P+++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + + ISA EQC +P I+ P L +K+ + + ++V Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHPVAA 175 >gi|42524645|ref|NP_970025.1| hypothetical protein Bd3271 [Bdellovibrio bacteriovorus HD100] gi|39576855|emb|CAE78084.1| Conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 253 Score = 187 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 117/248 (47%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R +++ + Q +GD +H++ V R + G + + ++++V K Sbjct: 1 MRRYWIEKKDLFQDQVNFTGDVFHHIFDVCRQEIGSKFEVLTEDSKAYFVEVTHVSKKNA 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 +E + K+ + + S + +D +++K+VEMG+ +I+P + ++ + Sbjct: 61 TARVLEERIIPALKEPHLHLVLSLSRFPVMDAIMEKAVEMGVTSIQPFFSEFSFLRKGEK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCGSEN 176 + DR SA +Q L ++P E + L N + + +FA E + + Sbjct: 121 LSDNKTDRWDKIVKSATQQSGRGDLMKVHPAIPFEKISDLINRNGSGVGLFAYEGPSTLS 180 Query: 177 SLEKLHAI-----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E + + A I +V I++G EGG+ E E L + P++LGP++LR +TA + Sbjct: 181 IKEYVSKVKADHPAGIKDVWIIVGSEGGFSHREVEEFQKLG-LHPVTLGPQVLRVETACM 239 Query: 232 AAMALVQA 239 +++++ Sbjct: 240 TLVSVLKY 247 >gi|292669689|ref|ZP_06603115.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648486|gb|EFF66458.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 246 Score = 187 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 16/231 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++RLF L + + +G H+LA V+R + GD++++ + + Sbjct: 1 MRRLFYAGELA--EEIRITGGDAHHLARVMRAQIGDDVIVAGADGRAARMTVIAAARDAV 58 Query: 67 --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120 EY ++ + + ++V + +K ++D+++QK+ E+G I PV T + Sbjct: 59 TLALAEYIAQEEARGTEVFLAQALLKGEKMDFVVQKAAELGAAGIYPVKTEHVVVRYDAK 118 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCGS 174 R + AA+QC L + P L LL + + IVF E Sbjct: 119 KAAAKTARWQKIADEAAKQCGRSMLMPVAPIRPLPDLLVDARIFDPADTAIVFCYEQEHR 178 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ L I V I +G EGG+ S E + + + P+SLG ILR Sbjct: 179 QSVRTVLQTIKA-RRVVIFVGAEGGFSSAEADMICAAGG-QPVSLGRLILR 227 >gi|34763185|ref|ZP_00144151.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887154|gb|EAA24259.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 235 Score = 187 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 8/209 (3%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYI 85 +++ +V R +GD I +G + E+L +I + K I+ K+ E S + ++ Sbjct: 21 DINHIKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEIDAG 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144 S +K +++D IQK E+G+ I P+ + DR + A +QC + Sbjct: 80 ISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVVPT 139 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203 I ++ L + I+ E + L + P + +IG EGG+ E Sbjct: 140 AIDEIKKIDKL--DLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKE 197 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232 E + L +SLG RILR++TAA+ Sbjct: 198 EIDYLKENG-AKIISLGKRILRAETAAIV 225 >gi|257125127|ref|YP_003163241.1| hypothetical protein Lebu_0332 [Leptotrichia buccalis C-1013-b] gi|257049066|gb|ACV38250.1| protein of unknown function DUF558 [Leptotrichia buccalis C-1013-b] Length = 237 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 8/216 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDV 82 +++ +V R+ GD + + +G+ E+ +KI + K +E S + ++ Sbjct: 22 EKSDCNHIQNVYRLNIGDELRIIDGE-YEYFTKIIEISKKEVAVKILEKNEDSYSLNINI 80 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHYNMDRVRTYTISAAEQCDIL 141 +K ++++ IQK E+G+ +I P+ T + ++ T +QC + Sbjct: 81 DVAMGILKNDKMNLAIQKLTEIGVKSIIPLKTERVVVRINEKKEKWDTVARETLKQCRGV 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 I P L + ++ +I+FA E SL ++ N+ +IGPEGG Sbjct: 141 KFTEILPVKKLAEI--DYKKYDKIIFAYENSNESKSLSEIIKQKD-KNILYIIGPEGGIA 197 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EE + L + + +SLG RILR++TAA+ ++ Sbjct: 198 QEEVDFLKNNKAIE-ISLGKRILRAETAAIVVCGII 232 >gi|256827194|ref|YP_003151153.1| hypothetical protein Ccur_07670 [Cryptobacterium curtum DSM 15641] gi|256583337|gb|ACU94471.1| conserved hypothetical protein TIGR00046 [Cryptobacterium curtum DSM 15641] Length = 260 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 21/254 (8%) Query: 9 RLFVD-FPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62 R F+ L + + + S + H+ A VLR+ G+++ + + + +I Sbjct: 5 RFFLPSQVLACEQESPFILRLSAEDEHH-ARVLRLAAGEHVAVVDAAQDYFECEIVSFYA 63 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + ++ + + + V + K +++D +I+ + E+G+ P+ + Sbjct: 64 AGMCVRIAAHNSASVDRPQVCLLQGISKGDKVDVVIRHATELGVTQFVPLACERSVVKLD 123 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCG-- 173 H + R R SAA Q +P + P + + + D C ++ +E G Sbjct: 124 GDKAHKRVGRWRAIAKSAAMQSGQPRIPEVTLPYRCDEVAEILSDATCILICWEEAHGVG 183 Query: 174 -SENSLEKLH---AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDT 228 SE + L A VA++IGPEGG E + + ++LG ILR++T Sbjct: 184 VSEAIAQALQLSGQTAAHARVALVIGPEGGLTQHEVDYFLHMGPPAYAVTLGSSILRTET 243 Query: 229 AAVAAMALVQAICG 242 A + A AL + G Sbjct: 244 AGIVAPALALSTLG 257 >gi|323342116|ref|ZP_08082349.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464541|gb|EFY09734.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 233 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 21/241 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ F++ + S DQ H VLRM+EGD+I L + + ++ S+ ++ Sbjct: 1 MQQFFIESI----EDLQLSADQLHQCRKVLRMQEGDSIRLVDHRGNGVIA--SFTDDTLT 54 Query: 67 -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119 V+ K+ ++ + S I++ RL++MIQK+ E G+ I V+ + + Sbjct: 55 HLTVKEPIEWNEKKFRLRIVASLIRSERLEWMIQKACECGVDEIILYQSQHGVVRDFGKR 114 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSL 178 + M+R+ A+EQ + TL+ L + D N DE Sbjct: 115 SDRKMERLNLIAKEASEQSYRQYEVPVKGIATLDDLPQYQSDLNLYADIGDEAHLIHTVR 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E ++ +L+GPEGG+ ++E+ ++ + +SLG +LR++TA++ +V Sbjct: 175 E------DTKSITVLVGPEGGFSNDERSKFEAMGYRQ-VSLGDNVLRAETASIYICNIVS 227 Query: 239 A 239 A Sbjct: 228 A 228 >gi|83814115|ref|YP_446222.1| hypothetical protein SRU_2116 [Salinibacter ruber DSM 13855] gi|294508153|ref|YP_003572211.1| hypothetical protein SRM_02338 [Salinibacter ruber M8] gi|83755509|gb|ABC43622.1| conserved hypothetical protein TIGR00046 [Salinibacter ruber DSM 13855] gi|294344481|emb|CBH25259.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 239 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 5/231 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 + + ++ +L VLR + GD++ + +G G + ++I +VG Sbjct: 5 FYAPPSAIRAGRVVLPEEEARHLRTVLRGEAGDDMTVVDGDGGWYRARIDHVGPDQVVGT 64 Query: 70 EYQSRSQ--TKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 R DV +K R + ++K+VE+G + P+ TR T+ +R Sbjct: 65 ITDERDNVGEPDMDVTVALGILKKRSRFETFVEKAVELGARRVVPLRTRRTERDAIREER 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +R ++A +QC LP + P ++E LL ++V S + Sbjct: 125 LRNVMVAAMKQCRRSRLPALAAPQSIEPLLAGDVGETRLV-CHAGEESVPIQQAAADTRQ 183 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + +L+GPEGG+ + TP+SLG R LR++TA +AA+ V Sbjct: 184 RASALVLVGPEGGFAPP-EVEAAVEAEATPVSLGARRLRAETAGIAALHAV 233 >gi|308189971|ref|YP_003922902.1| hypothetical protein MFE_04220 [Mycoplasma fermentans JER] gi|319777253|ref|YP_004136904.1| chp protein [Mycoplasma fermentans M64] gi|307624713|gb|ADN69018.1| conserved hypothetical protein [Mycoplasma fermentans JER] gi|318038328|gb|ADV34527.1| CHP protein [Mycoplasma fermentans M64] Length = 226 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 20/235 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV + + S + +++ V R+++ + L N +D + K+ + Sbjct: 1 MHRFFV-TKKSDQDHFELSKEILNHI-KVARVEKDE--FLCNYQDIFYKCKLE---NNKA 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD- 125 +E + + IK R ++++QK+ E+G+ I P ++YT + Sbjct: 54 LIIEKLDINHEFNKPIILAAPIIKIKRFEWILQKATELGVTTIIPFASKYTDAKILKYEF 113 Query: 126 -----RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R +AAEQ +P++ LE ++K + + + EN +K Sbjct: 114 NSKQNRFNEIIKNAAEQSFRNIIPYLTKIMNLEEIIKTYPTMQKYLAY------ENQDQK 167 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + I + + +++GPEGG+ EE E + SLG ILR++TA + +A Sbjct: 168 NNIITYPTSSILIVGPEGGFSPEEIELAKENN-IKITSLGKTILRAETACLYMLA 221 >gi|156742110|ref|YP_001432239.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus castenholzii DSM 13941] gi|156233438|gb|ABU58221.1| protein of unknown function DUF558 [Roseiflexus castenholzii DSM 13941] Length = 257 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 11/236 (4%) Query: 3 IHSHLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + S+ R FVD + + + H LA+VLR+ G+ ++L +G+ ++ + V Sbjct: 9 VQSNTYRFFVDPAAFDTERVRLFDPELGHQLANVLRLGRGERVVLLDGEGWQYTVMLETV 68 Query: 62 GKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 + +SR + + I+ R ++ +QK VE+G+ A P + + Sbjct: 69 DRRGTVNGVIESREVAGGEPRLALTVYLPLIRAERFEWALQKGVELGVAAFVPTVCARSI 128 Query: 119 NT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 + + R R AAEQ LP + P T + + + E + Sbjct: 129 DAAPDERRLARWRRIIREAAEQSRRGRLPRLAPSLTFNEACTQFTLHSPALLLWEGDNAT 188 Query: 176 NSLEKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 LHA+ + + I GPEGG ++E++ + +SLGPR LR++T Sbjct: 189 PLAGALHALRRDTSPAALGIFSGPEGGLTNDERQWAERHG-IMIVSLGPRTLRAET 243 >gi|47459063|ref|YP_015925.1| hypothetical protein MMOB2280 [Mycoplasma mobile 163K] gi|47458392|gb|AAT27714.1| expressed protein [Mycoplasma mobile 163K] Length = 223 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 18/236 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV I +++ VLR+K + N + + K+ I Sbjct: 1 MHRFFVTKK--INNTFILDEKVLNHI-KVLRIKND--FFICNYNNEFYKCKLE---NKIA 52 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122 VE + +++V + I + ++QK+ E+G I P I++++ Sbjct: 53 IIVEKLNIDNEFKNEVVLAMALINPKNFELVLQKATELGATKIIPFISKFSNFKKDFALK 112 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R ++A+ Q +P + P +L + ++ + + + T S+ L+ Sbjct: 113 KIERWNEIILNASSQSFRNKVPILEKPLDFSQVL-DLNYEYKYIAYENTDLSKE----LN 167 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 N +IGPEGG+ +E +T + T +SLG RILRS+TAA ++ V Sbjct: 168 TNLFCSNSIFIIGPEGGFFQDEIKTAIEKGWKT-ISLGKRILRSETAAFFVLSRVN 222 >gi|296328429|ref|ZP_06870955.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154503|gb|EFG95295.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 235 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQ 79 +++ + R +GD I +G + E+L +I + K I+ K+ E + Sbjct: 15 LVIDAGDINHIKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLKILEKIEDKFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 +V S +K +++D IQK E+G+ I P+ + DR T + A +QC Sbjct: 74 IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTISKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197 + I + L N+ I+ E E L + + +IG E Sbjct: 134 QGVVPTVIDEIKKINKL--NFKDYDLILVPYENEKEIFIKEILRDLKIKPSKILYIIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225 >gi|19704550|ref|NP_604112.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714836|gb|AAL95411.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 235 Score = 185 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 8/215 (3%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQ 79 +++ + R +GD I +G + E+L +I + K I+ K+ E + Sbjct: 15 LVIDAGDINHIKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLKILEKIEDKFSLD 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138 +V S +K +++D IQK E+G+ I P+ + DR T + A +QC Sbjct: 74 IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTISKEALKQC 133 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197 + I + L N+ I+ E E L + + +IG E Sbjct: 134 QGVVPTVIDEIKKINKL--NFKDYDLILVPYENEKEIFIKEILRDLKIKPSKILYIIGAE 191 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 GG+ EE + L +SLG RILR++TAA+ Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225 >gi|322507766|gb|ADX03220.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] Length = 191 Score = 185 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 16/194 (8%) Query: 57 KISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 ++ + K F + K +R+DY IQK+ E+G+ I+ + + Sbjct: 2 TLTEINKKNAFVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTS 61 Query: 115 RYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVF 167 + +D + I+A EQC + +P + P +L L + D + V Sbjct: 62 ERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPTSKFVL 121 Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 A E + + L I P +A+LIGPEGG E + F+ +G R+LR++ Sbjct: 122 APE----KEQKDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTE 174 Query: 228 TAAVAAMALVQAIC 241 TA V A++++ Sbjct: 175 TAPVVALSILNYRF 188 >gi|299144167|ref|ZP_07037247.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518652|gb|EFI42391.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 238 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 15/234 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 + R F + S + H+ VLR++E + I+ +G + + G I Sbjct: 1 MYRFF--ENANFENTITLSKENSHHYKTVLRIRE-EEIVEVGANNGVFKAIFDSCCGDFI 57 Query: 66 RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----N 119 K VE S + + + +K +++D ++ SVE+G+ I P+ T+ Sbjct: 58 ILKKVEEVSAERESDVKLILLQGILKGDKMDQALKSSVEVGVCEIYPLNTKRVVAQIDHK 117 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + R + +AA+Q +P + P LE + + ++ IV + Sbjct: 118 EYKKVQRWQRVVEAAAKQSKRDYIPRVNTPIDLEGIEEILENRELIVPYENEDDDRLVDI 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 KL NV ++IGPEGG+ E + L SL +SLG RILR++TAAV A Sbjct: 178 KL----ENKNVILVIGPEGGFEETEIDYLKSLG-AKIVSLGNRILRAETAAVCA 226 >gi|332296139|ref|YP_004438062.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium narugense DSM 14796] gi|332179242|gb|AEE14931.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium narugense DSM 14796] Length = 240 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 15/243 (6%) Query: 8 KRLFVDFPLCIKT----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 RL+++ + D+ HYL VLR+K+ D +++ +G + S++ K Sbjct: 4 PRLYINKNRIANPVEGFSIELDKDEKHYLFKVLRLKDDDEVVVLDGAGNIFRSRV----K 59 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY---TQNT 120 + +S ++ + ++ K ++ +I+ E+G+ + + + Sbjct: 60 GDCIILGEKSDAKEPKLNLTLFQFLPKGDKFSEIIRMCTELGVKKFVLIYGERNSYGEVS 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R + AAE +P I P L + +VF + S S++ Sbjct: 120 LNKIKRWQRIAKEAAELAGRGVVPEILGPYKLFKVPDELFKGQIVVFWE---NSNQSIKD 176 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A ++++ IG EGG E E L S LSLG RILR TA+V+A +++ + Sbjct: 177 LFKSAISEDLSLFIGAEGGISLNEIEFLKSKGAY-VLSLGERILRVQTASVSACSIMFYL 235 Query: 241 CGD 243 D Sbjct: 236 SND 238 >gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894760|gb|EFG74486.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 240 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 13/238 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 +VD I GD+ + A V R++ G+ ++L +G G ++ + G+ +R + Sbjct: 6 FYVDALPDIGALAAVDGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + + V + + K+ R + ++ + E G A R V + Sbjct: 66 VLERWTVAPARPPVTVVQALPKSERSELAVELATEAGADAFLAWQSARCVASWQGPRVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179 + R R SAA Q +P + + L ++ +V A S+ + Sbjct: 126 GLRRWRAVARSAARQSRRAHIPAVDGVLSTAELTGRVRAASAAGSVVLALHESASDRLAD 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +A +V +++GPEGG EE L V + LGP++LR+ TAA A+ + Sbjct: 186 --SHVAQADSVWLVVGPEGGIAPEEIAALTDAGAV-AVGLGPQVLRTSTAAAVALGAL 240 >gi|225873892|ref|YP_002755351.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum ATCC 51196] gi|225791516|gb|ACO31606.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum ATCC 51196] Length = 243 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 13/218 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ 76 + +G+Q +L VLR + G + G D W I+ + G ++RF + + + Sbjct: 12 DEATASLTGEQASHLIRVLRAQPGMEFDIVAG-DRVWHGVIAGITGDAVRFNLVAEVEAD 70 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYT 131 + + + K +R+++ I+K+ E+G+ I+PVI R ++ ++R R Sbjct: 71 PALP-ITLLLAVFKFDRMEWAIEKATELGVERIQPVIARRSEKHLAQAAAARVERWRRIA 129 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH----I 187 AA+Q +P I P L+ ++ + + + A++ + A+A I Sbjct: 130 REAAKQSRRSDIPEIDEPLPLKTAVRQPGEHLRFLLAEQERSTTFRFALGEALAQAGDEI 189 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 P + I +GPEGG+ +EE+ + + +SLGPRILR Sbjct: 190 PKIEIAVGPEGGWTAEEEALFDAEGW-KAVSLGPRILR 226 >gi|116785897|gb|ABK23900.1| unknown [Picea sitchensis] Length = 301 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 9/228 (3%) Query: 7 LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R + + P + GD++ ++ LR+ D + LFN + G + V +S Sbjct: 57 LPRFYSEVLPAGKDKIVRIEGDEFWHMTKALRLGVQDRVELFNARGGLVEGVVLRVERSS 116 Query: 66 RFKVEYQSRSQTKQSDVQYI----FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120 V + + VQ+ F +K R D++I+K E+G ++ P++T + + Sbjct: 117 ADIVALEEPLLLTPTGVQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSTLIS 176 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R + ++A +QC L + PT +E +L + + A + +E Sbjct: 177 GNRVERWQRVMLAAIKQCQRLHQMVVKTPTGIESILPRIETSSVSFLA--MAEATPIVEV 234 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + +++GPEG + +E L + P+ LGP LR +T Sbjct: 235 LPKVDKKDGGLLIVGPEGDFTDKEVRALTEAGAI-PVGLGPCRLRVET 281 >gi|226360380|ref|YP_002778158.1| 16S ribosomal RNA methyltransferase RsmE [Rhodococcus opacus B4] gi|226238865|dbj|BAH49213.1| hypothetical protein [Rhodococcus opacus B4] Length = 253 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 100/245 (40%), Gaps = 13/245 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+D + + G + + A V R+ G+ I+L +G+ G ++++ GK + Sbjct: 6 FFLDPLPEVGSTAVLDGPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAGKDRLELT 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K R + ++ + E G+ AI P + Sbjct: 66 VHDRRQVSAPSPSVTVVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + R R+ ++AA+Q +P + + +++ +V ++ E Sbjct: 126 GVARWRSAALAAAKQSRRAIVPAVSELHRTAGMLAVVREVIGRGGVVAVLHEAATQGLAE 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + +++GPEGG +E L V P+ LGP +LR+ TAA A+ + Sbjct: 186 L--PLRSAAEIVLVVGPEGGISEDEITALTEAGAV-PVLLGPHVLRTSTAAAVALGAIGV 242 Query: 240 ICGDW 244 + W Sbjct: 243 LTDRW 247 >gi|111018255|ref|YP_701227.1| hypothetical protein RHA1_ro01245 [Rhodococcus jostii RHA1] gi|110817785|gb|ABG93069.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 253 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 17/247 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+D + + G + + A V R+ G+ I+L +G+ G ++++ K + Sbjct: 6 FFLDPLPEVGSTAVLDGPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAAKDRLELT 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K R + ++ + E G+ AI P + Sbjct: 66 VHKRRQVPAPSPSVTVVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVEK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----NWDHNCQIVFADETCGSENS 177 + R R+ ++AA+Q +P + +L V + Sbjct: 126 GVARWRSAALAAAKQSRRAIVPEVSELHRTAEMLAVVREVVGRGGVVAVLHEAATQGLAE 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + + +++GPEGG EE L V P+ LGP +LR+ TAA A+ + Sbjct: 186 LP----LRSAAEIVLVVGPEGGISEEEITALTDAGAV-PVLLGPHVLRTSTAAAVALGAI 240 Query: 238 QAICGDW 244 + W Sbjct: 241 GVLTDRW 247 >gi|296110360|ref|YP_003620741.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154] gi|295831891|gb|ADG39772.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154] Length = 247 Score = 183 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 16/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 ++R F+ + DQ + + VLR + G + + ++ + Sbjct: 1 MQRYFLKQA-IDDDHIVLTHDQDIFKHFGKVLRARVGSQAEFVSRTKKVVVGEVIAIDSE 59 Query: 65 I--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT 117 V + + +V I SP+K +R D+ +QK+ E+G+ I + + Sbjct: 60 TMTLAVVSRLNDAVELPIEVTMIVSPLKNDRSDWFVQKATELGVNRIIFTNMSRTVADWQ 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R++ +AAEQ L +P + E +++ IV +E+ Sbjct: 120 KQQSKKGLRLQKIAEAAAEQSHRLMVPMVD-FLPWEEVVR-LPKKAGIVAWEESARQGEV 177 Query: 178 LEKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + I +P V +L+GPEGG E L + LGPRILR++TA + + Sbjct: 178 ATLVKVINQLPKEAHVHVLLGPEGGLTLSEINLLIENGY-QAAGLGPRILRAETAPLYVL 236 Query: 235 ALVQAI 240 + + + Sbjct: 237 SAISVL 242 >gi|320547793|ref|ZP_08042077.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812] gi|320447553|gb|EFW88312.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812] Length = 246 Score = 183 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 97/246 (39%), Gaps = 14/246 (5%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +++ FV + + D ++ +V+R+ E + ++L + L+K+ + Sbjct: 1 MQQYFV--AGQAQDVITITDKDTVKHMFNVMRLTEDEEVVLVFDDHIKRLAKVVDSAEHR 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119 ++ + + +V K ++L+++ QK E+GM + V+ + Sbjct: 59 FEIIKELNSNVEMPVEVTIAAGFPKGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176 D++ I AAEQ +P + L D +I A E E Sbjct: 119 LAKKADKLAKIAIGAAEQSKRNVIPGVTLFDKKAAFLAELDQFDKIFIAYEESAKEGETA 178 Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L + + + GPEGG +E + + LGPRI+R++TA + A++ Sbjct: 179 ILARELSQVKAGEKILFIFGPEGGISPDEIVAFEEKGGLK-IGLGPRIMRAETAPLYALS 237 Query: 236 LVQAIC 241 V Sbjct: 238 SVSYAL 243 >gi|256375381|ref|YP_003099041.1| hypothetical protein Amir_1243 [Actinosynnema mirum DSM 43827] gi|255919684|gb|ACU35195.1| protein of unknown function DUF558 [Actinosynnema mirum DSM 43827] Length = 244 Score = 183 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 14/243 (5%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69 F+ L + G + + A V R++ G+ ++L +G + +I+ K S+R +V Sbjct: 6 FLVESLPTGSDAVLDGPEGRHAATVRRLRAGEELVLSDGSGDQVRCEITEALKDSLRLRV 65 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHY 122 + V + + +K R + ++ + E G+ A+ P Sbjct: 66 VERWTVPEPGVRVVLVQALVKGERGELAVELATEAGVDAVLPWKAARCVAKWEDGPRGAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEF-LLKNWDHNCQIVFADETCGSENSLEKL 181 + R R AA+Q +P + P T + +V + S+ Sbjct: 126 ALGRWRATAREAAKQARRARVPEVGEPVTTKQLAALASRAAAVLVLHESAEVGIGSV--- 182 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A+ V +++GPEGG +E L + LGP +LR+ TA A+ + + Sbjct: 183 -ALPPSGEVLLVVGPEGGIAEQELSALVEAG-AHVVRLGPSVLRASTAGAVALGALGVLT 240 Query: 242 GDW 244 W Sbjct: 241 DRW 243 >gi|171778872|ref|ZP_02919934.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282518|gb|EDT47942.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 12/245 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV D ++ +V+R+ E + ++L + L+K+ + Sbjct: 1 MQQYFV-AGQAQDVVTITDKDTVKHMFNVMRLTEDEEVVLVFDDHIKRLAKVIDSAEHCF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 +E + +V K ++L+++ QK E+GM + V+ + Sbjct: 60 EIIEELDSNVEMPVEVTIAAGFPKGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176 D++ + AAEQ +P + + + +I A E E Sbjct: 120 AKKADKLAKIALGAAEQSKRNVIPQVTLFEKRATFMAELEQFDKIFIAYEDSAKEGETAV 179 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + + GPEGG EE + + LGPRI+R +TA + A++ Sbjct: 180 LARELSQVKAGEKILFIFGPEGGISPEEIAAFEEKGGLK-IGLGPRIMRVETAPLYALSS 238 Query: 237 VQAIC 241 V Sbjct: 239 VSYAL 243 >gi|257462827|ref|ZP_05627233.1| putative cytoplasmic protein [Fusobacterium sp. D12] gi|317060456|ref|ZP_07924941.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313686132|gb|EFS22967.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 237 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 14/226 (6%) Query: 20 TQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKV-EYQSRSQ 76 + + H+L HV R++ GD + +G D E++ +I + + ++ E + + Sbjct: 13 DEIILEKKEDLHHLLHVFRLEVGDKVRAVDG-DYEYICEIQKIIENKVHLQILEKKEDAF 71 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRTYTISAA 135 + ++ IK +++D+ IQK E+G+ +I P I + T Sbjct: 72 SLSVEIDAAICLIKNDKMDFCIQKLTELGIHSILPTIAKRCVVKLKEKKEKWNTIVKETM 131 Query: 136 EQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHA---IAHIPNVA 191 +QC + I L+ L L+N+D ++ C E+SL+ + + + Sbjct: 132 KQCQGVKPTQIQEIIDLKQLPLENYD----LILLPYECEEEHSLKHVLRNGLLGATKKIL 187 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGG+ EE E L S +SLG RILR++TAA+ ++ Sbjct: 188 YIIGPEGGFEKEEIEHLASKG-AKVVSLGKRILRAETAAIVVGGVL 232 >gi|228933130|ref|YP_377200.2| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9902] Length = 243 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 8/234 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 M+ L+RL + + ++ D+ HYL VLR++ GD + + +G W +++ Sbjct: 1 MR---ELRRLLIQPDRFVGSELLTLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAELV 57 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ- 118 +++ + + + S I+ D +++ + E+G+ AI+P+ T Sbjct: 58 DEY-TVKTQPHPCEQVVQPHPRLGLAVSIIRRG-FDDVVRMACELGIDAIQPLRCERTVP 115 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + DR T A EQC+ L P + +L+ L + + Sbjct: 116 QAEHRPDRWNTIVREAVEQCERLWKPTVLELNSLDSWLNSCSGQKAVGVTRTPNVGPLKD 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 A +++GPEGG+ E E L+ V P+ LGP ILR+ TAAVA Sbjct: 176 WFQQKAAPGQTTWLIVGPEGGWTVAELEALNDHS-VVPIHLGPSILRTSTAAVA 228 >gi|118468490|ref|YP_888775.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium smegmatis str. MC2 155] gi|118169777|gb|ABK70673.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD GD+ H+ A+V R++ G+ I L +G + K S+ + Sbjct: 6 FYVDVLPGAGELAVVDGDEGHHAANVRRIRVGERIDLSDGAGTLAHCVVENTAKGSVSAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 + Q + V + + K++R + I+ + E G A + Sbjct: 66 ITEQVTLPPARPSVTVVQALPKSDRSELAIELATEAGADAFVAWQSARCVARWDGPKADK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R SAA Q +P + + LL+ +V A + E Sbjct: 126 GLRRWSAVARSAARQSRRAYIPTVTGVESTRDLLRRIASTDSVVLALHESATAPFAEI-- 183 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +A +V ++IGPEGG +E L + LGP +LR+ T Sbjct: 184 PVAQSDSVILIIGPEGGIADDEIAALTDAG-AHAVRLGPTVLRTST 228 >gi|78169059|gb|ABB26156.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 259 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 7/230 (3%) Query: 6 HLKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L+RL + + ++ D+ HYL VLR++ GD + + +G W +++ Sbjct: 19 ELRRLLIQPDRFVGSELLTLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAELV---DE 75 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQ-NTHY 122 K + Q Q + + R D +++ + E+G+ AI+P+ T + Sbjct: 76 YTVKTQPHPCEQVVQPHPRLGLAVSIIRRGFDDVVRMACELGIDAIQPLRCERTVPQAEH 135 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 DR T A EQC+ L P + +L+ L + + Sbjct: 136 RPDRWNTIVREAVEQCERLWKPTVLELNSLDSWLNSCSGQKAVGVTRTPNVGPLKDWFQQ 195 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 A +++GPEGG+ E E L+ V P+ LGP ILR+ TAAVA Sbjct: 196 KAAPGQTTWLIVGPEGGWTVAELEALNDHS-VVPIHLGPSILRTSTAAVA 244 >gi|257453135|ref|ZP_05618434.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R] gi|257467389|ref|ZP_05631700.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918519|ref|ZP_07914759.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059670|ref|ZP_07924155.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313685346|gb|EFS22181.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313692394|gb|EFS29229.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 236 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 13/230 (5%) Query: 20 TQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKV-EYQSRSQ 76 + + H+L HV R++ GD + +G D E++ +I + + ++ E + + Sbjct: 13 DEIILEKKEDLHHLLHVFRLEIGDKVRAVDG-DYEYICEIQKIIENKVHLQILEKREDAF 71 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAA 135 + D+ IK +++D+ IQK E+G+ +I P + + ++ T Sbjct: 72 SLSVDIDAAICLIKNDKMDFCIQKLTELGIRSIIPTVAKRCVVKLKEKKEKWNTIVKETM 131 Query: 136 EQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAI 192 +QC + I T L+ L L+++D ++ C E+SL+ + + + V Sbjct: 132 KQCQGVKPTQIQEVTDLKKLPLEDYD----LILLPYECEEEHSLKYVLQNRVEKPRKVLY 187 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +IGPEGG+ EE + L S +SLG RILR++TAA+ ++ G Sbjct: 188 VIGPEGGFEKEEIQYLASKR-AEVVSLGKRILRAETAAIVVGGILVHEFG 236 >gi|262193422|ref|YP_003264631.1| hypothetical protein Hoch_0097 [Haliangium ochraceum DSM 14365] gi|262076769|gb|ACY12738.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365] Length = 250 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 18/232 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67 RLFV+ + GD + YL V R++ GD + LF+G E ++++ + G+ + Sbjct: 4 RLFVEPASLRAGAVEVCGDDHRYLFRVRRLRVGDAVTLFDGAGREADARVAAIDGERAQL 63 Query: 68 KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 +V E ++ V + + IK +R+D+ +QK VE+G+ I PV + T +D Sbjct: 64 EVAEPRAVVAPSPCRVSVLPALIKGDRMDFCVQKLVELGVHEIAPVTSARTV---VKLDG 120 Query: 127 VRT---------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSEN 176 R +AA QC+ T+P I LE L + +++ Sbjct: 121 ARAARRRERFVDIARAAARQCERATVPEIAAIAPLEQALASRAQTPLKLILW--ARERSR 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L + A V + +GPEGG+ EE E + F P+ LG +LR++T Sbjct: 179 MLRDIVAQPLPAGVCVAVGPEGGFAPEEIEAAVAAGF-EPVGLGGHVLRAET 229 >gi|313888909|ref|ZP_07822569.1| RNA methyltransferase, RsmE family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845082|gb|EFR32483.1| RNA methyltransferase, RsmE family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 229 Score = 182 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 19/232 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F D + H+L +V+R+K+G+ + + Y G+ I+ Sbjct: 1 MYRFFEDREFQGN--MNLKEETLHHLKNVIRIKDGEVFQVVFEDGIFSFA---YEGEKIK 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTH 121 + S + + F +K N+ + +++ + E+G+ PVI + + Sbjct: 56 -NLGEVLESNESKVRLSLFFGILKNNKSEDVLRHATEIGVSDFYPVIMDRSISDISKKKE 114 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R + SAA+Q +P ++ + +L + + +V E + Sbjct: 115 KKLERFQKIVESAAKQSKRDVIPIVHDIIKTDDIL---NFSGDLVLCYEDENKTQLGDIT 171 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 A+++ N+ ++IGPEGG E E L + LG RILR++TAA+ A Sbjct: 172 KALSN--NIGLVIGPEGGISERELELLSEA---KKVGLGRRILRAETAAITA 218 >gi|238060562|ref|ZP_04605271.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149] gi|237882373|gb|EEP71201.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149] Length = 244 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 15/245 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 LF+ L SG + H+ A V R++ G+ +LL +G+ G + ++ VG+ ++ + Sbjct: 5 LFLVDALPTGDSLTLSGPEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGRGTLDLR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 V + + + K +R + +Q E+G+ I P + Sbjct: 65 VTTRGYVDAHVPRLVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGERGVR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIY---PPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++ AA+Q LP + +T + V +E + E Sbjct: 125 AREKWVATAREAAKQARRAWLPVVAGSPDESTAAVAGRIAGAAAAFVLHEEAQERLATAE 184 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + +++GPEGG E T P LGP +LR+ TA VAA++ + Sbjct: 185 ----LPDAGEIVLVVGPEGGITDAELATFTEAG-ARPTRLGPSVLRTSTAGVAALSALSP 239 Query: 240 ICGDW 244 W Sbjct: 240 RLSRW 244 >gi|318041692|ref|ZP_07973648.1| hypothetical protein SCB01_08267 [Synechococcus sp. CB0101] Length = 255 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 10/230 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 S + YL VLR GD + +G W +++ ++ + Q Sbjct: 20 ADGVLGLSAEHSRYLCKVLRYGPGDRFAVVDGAGHLWEAELLDREQARMLQPLAQPLLSQ 79 Query: 78 KQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAA 135 + + + R + +++ +VE+G+ + P++ T +R ++ AA Sbjct: 80 PRDQPAVVLAAAVVKRDFELVVRMAVELGVDRLVPLLCERTAVQGQLRPERWQSIAEEAA 139 Query: 136 EQCDILTLPFIYPPTTLEFLLK-----NWDHNCQIVFADETCGSENSLEKL-HAIAHIPN 189 EQC+ L LP I PPT L LL ++ G +E L + A +P+ Sbjct: 140 EQCERLWLPQIDPPTPLTELLSTDAATASVAAMRLWATTRQEGLPLLVEALASSAAQLPD 199 Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V + GPEGG+ E+E + +P+ LGP ILRS TAAVA AL+ Sbjct: 200 QVWLACGPEGGWSPAEEEQALGCGW-SPVQLGPTILRSSTAAVAGAALIS 248 >gi|229493162|ref|ZP_04386954.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus erythropolis SK121] gi|229319893|gb|EEN85722.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus erythropolis SK121] Length = 253 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 9/243 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+D + G + + A V R+ G+ ++L +G+ ++++ VGK + Sbjct: 6 FFLDPVPGVGEIAVLDGQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKDRLELL 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K R + ++ + E G+ A+ P + Sbjct: 66 VSDVQVLEQPKPLVTLVQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKL 181 + R R+ +SAA+Q +P I ++ D + S + Sbjct: 126 GVARWRSAAVSAAKQSRRAFVPEIAELHKTPAVIALVRDAVARGAVVAVLHESATTPLAG 185 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +A V +++GPEGG E L TP+ LGP +LR+ TA A+ + + Sbjct: 186 LPLASADEVFLVVGPEGGLDDSEISALSEAG-ATPVLLGPTVLRTSTAGAVALGAIGVLT 244 Query: 242 GDW 244 W Sbjct: 245 DRW 247 >gi|242279431|ref|YP_002991560.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio salexigens DSM 2638] gi|242122325|gb|ACS80021.1| protein of unknown function DUF558 [Desulfovibrio salexigens DSM 2638] Length = 239 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 7/234 (2%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L ++ P G + +L VLR + GD + LF+G + L ++ + K Sbjct: 1 MARLNSFYLP-PEDWDAPFILQGGEAKHLGKVLRTRVGDTVRLFDGCGRDGLFTVTEITK 59 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--H 121 S + ++ K++R +++++KSVE+ + + ++Q Sbjct: 60 SKVQLELNEEHFIADPRNLTLAIGWNKSSRRNWILEKSVELQTHGLIFYQSEFSQGKVPA 119 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + ++AA+QC LP + P ++E L++ +F E +N Sbjct: 120 ETKESWNEKLVAAAKQCGNAWLPELQTVPGSIEKLIEFSASYDNKLFLYEKA--DNDTVP 177 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 +++ + +IGPEGG+ E E L F P+SLG ILR +TAA+ M Sbjct: 178 NNSVFAAESTLAVIGPEGGFSPREAELLIENGF-KPVSLGSSILRWETAALLCM 230 >gi|297571544|ref|YP_003697318.1| hypothetical protein Arch_0977 [Arcanobacterium haemolyticum DSM 20595] gi|296931891|gb|ADH92699.1| protein of unknown function DUF558 [Arcanobacterium haemolyticum DSM 20595] Length = 245 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 17/243 (6%) Query: 11 FVDFPL---CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +VD L C+ + GD+ + A V R + G+ I + NGK ++ V KS Sbjct: 6 YVDPDLSAACVGETIRLDGDEARHAATVRRTRVGERIDIVNGKGLRATITVTDVAKSSLV 65 Query: 68 -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QN 119 VE+ + + + + K R + ++ + E G A P + Sbjct: 66 GTVEHVANDPAHNPQITLVQALAKGGRDEQAVETATEYGADAFIPWQAERSIVSWSDPAK 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSEN 176 + R SAA+Q +P + P + L + + + +V+ + Sbjct: 126 ARKGVGRWEATAQSAAKQSRRSWIPTVDQPHSSASLACHIADCCADGGVVYICHESATTP 185 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +L + + V I++GPEGG +E E L + + LG +LRS TA A+A+ Sbjct: 186 ITTQLDSSSR--KVMIVVGPEGGITDKELELLTNAGG-RVVLLGEHVLRSATAGPWAIAV 242 Query: 237 VQA 239 ++A Sbjct: 243 IRA 245 >gi|224060885|ref|XP_002300283.1| predicted protein [Populus trichocarpa] gi|222847541|gb|EEE85088.1| predicted protein [Populus trichocarpa] Length = 212 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 12/217 (5%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ----SDVQYIFS 87 + VLR+ D + LFNGK G I + ++ V + V F Sbjct: 1 MTKVLRLGTNDRVELFNGKGGLIEGCIERIDRTGLDFVALEDPKLVPPLSTKWHVYAAFG 60 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFI 146 +K +R D++++K E+G ++ P++T + + + +DR R ++A +Q L + Sbjct: 61 TLKGDRADWLLEKCTELGAHSVTPLLTERSPSISENRVDRFRRVILAATKQSQRLHEMIL 120 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 PPT + LL + A T G+ + L + + +++GPEG + +E Sbjct: 121 NPPTKIVGLL---PLSKLSFLA--TAGATPVVSVLTSSRKESSGLMIVGPEGDFTEKEVN 175 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + + + LGP LR +TA +A +A + + D Sbjct: 176 MMMKAG-ASAVGLGPHRLRVETATMALLATLM-LWSD 210 >gi|58177000|pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus gi|58177001|pdb|1V6Z|B Chain B, Crystal Structure Of Tt1573 From Thermus Thermophilus gi|85544471|pdb|2CX8|A Chain A, Crystal Structure Of Methyltransferase With Ligand(Sah) gi|85544472|pdb|2CX8|B Chain B, Crystal Structure Of Methyltransferase With Ligand(Sah) gi|160286352|pdb|2Z0Y|A Chain A, Crystal Structure Of Ttha0657-Sam Complex gi|160286353|pdb|2Z0Y|B Chain B, Crystal Structure Of Ttha0657-Sam Complex Length = 228 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 G + +L VLR + GD +F+G+ E L+++ +G +R++V + R Sbjct: 6 AFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEERR 64 Query: 75 SQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTY 130 + + +V + +K ++L +++ + E+G I+P++TR++ + + R+R Sbjct: 65 PEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEXGEGKLRRLRAV 124 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 + AA+Q + +P + PP L+ + + V + + + Sbjct: 125 ALEAAKQSGRVVVPEVLPPIPLKAVPQ--------VAQGLVAHVGATARVREVLDPEKPL 176 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+ +GPEGG+ EE L + F TP+SLG RILR++T Sbjct: 177 ALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAET 213 >gi|226307226|ref|YP_002767186.1| hypothetical protein RER_37390 [Rhodococcus erythropolis PR4] gi|226186343|dbj|BAH34447.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 253 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 9/243 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+D + G + + A V R+ G+ ++L +G+ ++++ VGK + Sbjct: 6 FFLDPVPGVGEIAVLDGQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKDRLELL 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V I + K R + ++ + E G+ A+ P + Sbjct: 66 VSDVQVLEQPKPLVTLIQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL 181 + R R+ +SAA+Q +P I ++ D + S + Sbjct: 126 GVARWRSAAVSAAKQSRRAFVPEISDLHKTAAVIALIRDAVARGAVVAVLHESATTPLAG 185 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +A V +++GPEGG E L TP+ LGP +LR+ TA A+ + + Sbjct: 186 LPLASADEVFLVVGPEGGLDDSEISALSEAG-ATPVLLGPTVLRTSTAGAVALGAIGVLT 244 Query: 242 GDW 244 W Sbjct: 245 DRW 247 >gi|269118812|ref|YP_003306989.1| hypothetical protein Sterm_0173 [Sebaldella termitidis ATCC 33386] gi|268612690|gb|ACZ07058.1| protein of unknown function DUF558 [Sebaldella termitidis ATCC 33386] Length = 236 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 9/229 (3%) Query: 13 DFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV- 69 + ++ + + + +++ +V R K GD I L +GK E+ + I+ +G K I +V Sbjct: 8 NEDFISESNVEITEKNDINHVKNVYRYKTGDTIRLIDGK-FEYKAVIAEIGNKRILLRVT 66 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHYNMDRVR 128 E S + + ++ +K ++++ +QK E+G+ I P+ T + ++ Sbjct: 67 EKHEDSYSLRVELDIALGILKNDKMNMALQKLTEIGINKIIPLKTDRVVVKLSDSKEKWN 126 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 T T A +QC + +P I TL+ + + +++FA E + + + Sbjct: 127 TVTEEALKQCRGVKIPEIERILTLKDI--EFSAYDKVLFAYENSSENKPVFTILS-GEEK 183 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + LIGPEGG+ EE + + + +SLG RI R++TAA+ ++ Sbjct: 184 RILYLIGPEGGFTEEETKYIREQGALE-ISLGKRIYRAETAAIVMGGIL 231 >gi|258546222|ref|ZP_05706456.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC 15826] gi|258518647|gb|EEV87506.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC 15826] Length = 227 Score = 181 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 19/222 (8%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RLF PL + + +++ VLR++ G +++LFNG ++ +++ + + Sbjct: 16 RLFSSQPLRVGEVVALDASAHRHVSAVLRLRVGASLVLFNGDGFDYAAELVACDRRASQV 75 Query: 68 KVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + ++ + +K +D ++QK+VE+G I P+ T + + Sbjct: 76 RILAREAVGNESPLNLVLFAALLKGEAMDRVVQKAVELGAKRIVPLRTARSEALPADERL 135 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLE 179 + + +++A QC TLP + +L++ I D S + E Sbjct: 136 SRKLAHWQGIVVASAMQCGRATLPQVEAVRDFADILEDAPGLRWIFSPHDAPAASGQAAE 195 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 V++LIGPEGG+ +E + ++ P SLGP Sbjct: 196 A---------VSVLIGPEGGFAPDEVAAAVNAGWL-PQSLGP 227 >gi|46198606|ref|YP_004273.1| hypothetical protein TTC0298 [Thermus thermophilus HB27] gi|46196229|gb|AAS80646.1| hypothetical conserved protein [Thermus thermophilus HB27] Length = 228 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 G + +L VLR + GD +F+G+ E L+++ +G +R++V + R Sbjct: 6 AFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEERR 64 Query: 75 SQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTY 130 + + +V + +K ++L +++ + E+G I+P++TR++ + + R+R Sbjct: 65 PEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAV 124 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 + AA+Q + +P + PP L+ + + V + + + Sbjct: 125 ALEAAKQSGRVRVPEVLPPIPLKAVPQ--------VAQGLVAHVGATARVREVLDPEKPL 176 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+ +GPEGG+ EE L + F TP+SLG RILR++T Sbjct: 177 ALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAET 213 >gi|55980626|ref|YP_143923.1| 16S ribosomal RNA methyltransferase RsmE [Thermus thermophilus HB8] gi|55772039|dbj|BAD70480.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 228 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 G + +L VLR + GD +F+G+ E L+++ +G +R++V + R Sbjct: 6 AFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEERR 64 Query: 75 SQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTY 130 + + +V + +K ++L +++ + E+G I+P++TR++ + + R+R Sbjct: 65 PEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAV 124 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 + AA+Q + +P + PP L+ + + V + + + Sbjct: 125 ALEAAKQSGRVVVPEVLPPIPLKAVPQ--------VAQGLVAHVGATARVREVLDPEKPL 176 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+ +GPEGG+ EE L + F TP+SLG RILR++T Sbjct: 177 ALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAET 213 >gi|159039365|ref|YP_001538618.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora arenicola CNS-205] gi|157918200|gb|ABV99627.1| protein of unknown function DUF558 [Salinispora arenicola CNS-205] Length = 244 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 13/244 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FK 68 LF+ L G + H+ A V R++ G+ +LL +G+ G + ++ VGK + + Sbjct: 5 LFLVESLPTADTAILEGAEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGKGVLDVR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 + + + + + K R + +Q E+G+ I P Sbjct: 65 ITSRGYTDAPAHRLVVVQGLAKGERGELAVQAMTEVGVDEIVPWTAARSVTQWRGDRGVR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIY--PPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++ A +Q LP + P + E + Sbjct: 125 AREKWVATVREATKQARRAWLPVVAGTPDEATSQVAGRIAGAAAAYVLHEQAEERLVTAE 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + +++GPEGG E + P+ LGP +LR+ TA VAA++++ A Sbjct: 185 L---PDGGEIVLVVGPEGGVAPAELTAFVAAG-AQPVRLGPSVLRTSTAGVAALSVLAAR 240 Query: 241 CGDW 244 G W Sbjct: 241 LGRW 244 >gi|124025432|ref|YP_001014548.1| hypothetical protein NATL1_07251 [Prochlorococcus marinus str. NATL1A] gi|123960500|gb|ABM75283.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. NATL1A] Length = 254 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 20/249 (8%) Query: 4 HSHLKRLFVD-----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + +RLF+ + + K + ++ HYL V+RM+ D + + +GK W +KI Sbjct: 1 MAEKRRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKI 60 Query: 59 SYVGKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 K+I+ + Q ++ + K + +Q S E+G+ I+P+I++ Sbjct: 61 VE-KKAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKG-FENFLQMSCEIGVDIIQPLISK 118 Query: 116 YTQNTH---YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + + R + A EQ + L P + T + + Q+ FA Sbjct: 119 RSVVKECSNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--AT 176 Query: 173 GSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E+ + + + P+ V ++IGPEGG++ EE+E + FV +S+G ILR+ T Sbjct: 177 RIEDLPDCVTWVKETPHEVNQVWVVIGPEGGWNKEEEELAFNAGFV-GVSMGETILRTST 235 Query: 229 AAVAAMALV 237 AAV+A+ ++ Sbjct: 236 AAVSALQVM 244 >gi|77919149|ref|YP_356964.1| hypothetical protein Pcar_1549 [Pelobacter carbinolicus DSM 2380] gi|77545232|gb|ABA88794.1| conserved hypothetical protein TIGR00046 [Pelobacter carbinolicus DSM 2380] Length = 259 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 17/240 (7%) Query: 12 VDFPLCIKTQGKASGDQYH---YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 +D P ++ + D Y + ++ G + + + + + +++ K + F+ Sbjct: 25 LDCPAVVEKEMALPPDAVRALSYWS----IRPGAIVTVVDSQGICFRARLVDSNKVVPFQ 80 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 + +K + + + R + ++QKSVE+G+ I P + ++ Sbjct: 81 PLVSTCVPSKS--LTLYQALPEKERFELILQKSVELGVQRIVPFVCSHSTTLAERDAGQR 138 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 R + AA+QC +P + P + + +L+ + E + L Sbjct: 139 KSHRWPEVVLRAAKQCRRGDIPELGPVMSFDQVLEEVSMWDLNLMLYEGDA-QARLHDAF 197 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 I + +I+IGPEGG+ E + +T +SLGPRILR++TAA+A ALVQ + G Sbjct: 198 TSKDISSASIIIGPEGGFARHEAQQASDAGILT-VSLGPRILRTETAAIAGAALVQFMLG 256 >gi|29832115|ref|NP_826749.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces avermitilis MA-4680] gi|29609233|dbj|BAC73284.1| putative protein involving differentiation [Streptomyces avermitilis MA-4680] Length = 249 Score = 180 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 9/234 (3%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQ 76 G + + V R++ G++++L +G + + + +++ + Sbjct: 16 GGHYVLDGAEGRHAVSVKRLRPGEDVVLTDGAGRWADCVVLGTEGKDRLIVQMDSVTEEP 75 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 ++ + + + K +R + ++ E G+ AI P + + R+ Sbjct: 76 PEEPRITVVQALPKGDRGELAVETMTETGVDAIVPWAAARCITQWKGDRGQKALAKWRST 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 A +Q + P + T + + E + ++ Sbjct: 136 AREAGKQSRRVRFPEVAGAMTSKQVAALLATADLAAVLHEDTEHGTEPFATAQLPTSGSI 195 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG EE E + LG +LR+ TA A AL+ A G W Sbjct: 196 VLVVGPEGGISPEEIELFTGVG-AKTFHLGRTVLRTSTAGTVATALLLARTGRW 248 >gi|312129649|ref|YP_003996989.1| hypothetical protein Lbys_0890 [Leadbetterella byssophila DSM 17132] gi|311906195|gb|ADQ16636.1| protein of unknown function DUF558 [Leadbetterella byssophila DSM 17132] Length = 234 Score = 180 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 10/234 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 LF L + + VLR K GD I + +GK G + I KS + + Sbjct: 8 LFYGQDLS--EVLALDPTESLHAVKVLRKKAGDIIQVTDGKGGWFTCSIVDAHPKSCKLQ 65 Query: 69 VEYQSRSQTKQSDVQYI-FSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + K Y+ SP K +R++Y ++KS+E+G+ I PV T +T + N +R Sbjct: 66 ILESTFEYEKPQREIYVAISPTKNGDRIEYFLEKSIEIGISGIIPVKTTHTYPKNINAER 125 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + ISA +Q LP IYP +++ L A + G+E+ + + Sbjct: 126 WKKIAISAMKQSLKAYLPEIYPYLSVKDFLTLSKPFPTKFLAHLSEGAEDIIRVPLS--- 182 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 V I IGPEG + EE S F ++LG LR++TA V A++++ A Sbjct: 183 -DKVLIWIGPEGDFTEEEINLATSSDF-QNVTLGKSRLRTETAGVFAVSILNAR 234 >gi|94984945|ref|YP_604309.1| hypothetical protein Dgeo_0838 [Deinococcus geothermalis DSM 11300] gi|94555226|gb|ABF45140.1| protein of unknown function DUF558 [Deinococcus geothermalis DSM 11300] Length = 230 Score = 180 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 17/216 (7%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRSQTKQSDVQYI 85 + +L HVLR++EGD + +F+G+ E + ++ +++ E S + V Sbjct: 21 ETRHL-HVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLA 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQCDILT 142 + +K ++L +++ + E+G+ ++ ++TR+ + R+R A++Q Sbjct: 80 VALLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAV 139 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPNVAILIGPEGGYH 201 P + P L L W+ + S ++L ++ V +L GPEGG Sbjct: 140 TPEVLAPVPLAEL--TWEGQLFV-------AQPGSAQRLTDHLSWDAPVTVLTGPEGGLS 190 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E L S V ++LGPRILR++TA VA + + Sbjct: 191 DAEIRALTSRGAV-AVTLGPRILRAETAPVALLGAL 225 >gi|148272747|ref|YP_001222308.1| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830677|emb|CAN01617.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 252 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ 72 L + +G + + V R++ G+ IL+ +G+ ++ + + +V+ Sbjct: 13 SDLAVGRLLVLAGQEARHAVTVSRVRSGEGILVGDGRGTIASGTVTSAEPQRLELRVDAV 72 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 V + + K +R + +Q + E+G+ A+ P + + Q DR Sbjct: 73 EAHPEPTPRVVLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDR 132 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--- 183 R A +Q +P + T + L++ +V + L+ A Sbjct: 133 WRAIVREAVKQSIRPRVPEVEALATTKDLVRMAATARVLVLDPTAVARLSRLDLATADGD 192 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +V +++GPEGG E E+L + + P++LGP ILR+ TA Sbjct: 193 AGPATDVLLVVGPEGGIAPAEVESLRAAGAI-PVALGPGILRTSTAG 238 >gi|317125267|ref|YP_004099379.1| hypothetical protein Intca_2142 [Intrasporangium calvum DSM 43043] gi|315589355|gb|ADU48652.1| protein of unknown function DUF558 [Intrasporangium calvum DSM 43043] Length = 247 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 13/230 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76 + GD+ + A V+R++ G+ + +G L++ V + S+R +V Sbjct: 18 PGSVIVLDGDEGRHAATVVRLRPGERYYVADGVGRRALAEAETVDRTSVRGRVLEVVDEA 77 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 + + + K +R + I+ + E+G+ + P + + ++ + T Sbjct: 78 EPATRFVLVQALAKGDRDEQAIEAATELGVDEVVPWAAERSIVVWRGERAAKSLAKWMTV 137 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPN 189 AA+Q +P P L L+ +V +E ++ A+A + Sbjct: 138 VTRAAKQSRRARIPLTSSPVDLAALIDRVRGAALTLVLHEEATEPLAAV----AVAESGD 193 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V +++GPEGG E E L + P+ LGP LRS TA AA+A++ A Sbjct: 194 VLVVVGPEGGISGRELEALVAAG-ARPVRLGPTTLRSSTAGPAALAVLNA 242 >gi|115374350|ref|ZP_01461634.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115368660|gb|EAU67611.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 216 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 7/199 (3%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 LR+ EG ++ +F+G + ++++ V +RS + + + K ++L+ Sbjct: 2 LRLSEGASLEVFDGTGRAFEARVAAVDAREARLTLGAARSTPPRRALSVLQGLPKGDKLE 61 Query: 96 YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149 +++QK E+G A PV T + + R AA QC +P ++PP Sbjct: 62 WVLQKGTELGAAAFYPVDTARSVVKLEPKRAGERTLRWEKIVEEAARQCRRNDVPQVHPP 121 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 L + Q++ DE + E A A VA+++GPEGG EE L Sbjct: 122 AALLDRARALPPGTQLLVLDEEETAVPLGEAFRACAPGAPVALVVGPEGGLTREEVAALR 181 Query: 210 SLPFVTPLSLGPRILRSDT 228 +L ++LG ILR++T Sbjct: 182 ALG-ARGVTLGALILRTET 199 >gi|240047429|ref|YP_002960817.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma conjunctivae HRC/581] gi|239985001|emb|CAT04994.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma conjunctivae] Length = 226 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 17/236 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ +++ V+R +E + + +L+K + +++ Sbjct: 1 MFRFFVNKK--EDNYFILDKKIVKHIS-VVR-QENKKFICVF-QKEFYLTKFEFPNRALI 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----H 121 K + T+ + + +KT ++ IQK+ E+G+ I P ++ + Sbjct: 56 LKKLDYNHENTEN--IVLAIAILKTKAFEFAIQKATELGVNTIIPFYSQNVEQKLGNDID 113 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + AA+Q +P I P ++ L++N+ H A E + + L Sbjct: 114 KKLVRWQEIITHAAQQSFRNVIPVIEKPIKIKTLIENYQHMKNKFIAHEKENNNLMINSL 173 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 N L+GPEGG+ EE E + F +SLG RILR++TAA+ ++ + Sbjct: 174 FE----NNTIFLVGPEGGFTEEEVEIAENFGF-QAISLGKRILRAETAAIFLLSRI 224 >gi|71894105|ref|YP_278213.1| hypothetical protein MS53_0081 [Mycoplasma synoviae 53] gi|71850893|gb|AAZ43502.1| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 225 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 19/235 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F L + S + +L VLR G L N ++ + K+ ++ Sbjct: 1 MHRFFCYKKLDSN-YFELSDELLKHL-KVLR--IGSEEFLVNYQNEFYKCKLE---NNLA 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 + Q + + IK R +++I+K+ E+G+ I P +++TQ Sbjct: 54 KIISKQEINNELDYKIYLAIGLIKFERFEWLIEKATELGVFEIVPFYSQFTQKHKLLNQF 113 Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +R AAEQ +P + P + E LL N+ N ++V + + L Sbjct: 114 QNKKNRFEKIIKFAAEQSFRNIIPNLKDPISFEDLL-NFYVNQKLVAHEISDNQNFDLNL 172 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L ++ + IG EGG+ S+E F + LG ILRS+TAA++ ++ Sbjct: 173 LTK----NDLLLTIGSEGGFSSDEIAKFKEANF-KVIHLGKTILRSETAAISLIS 222 >gi|87125782|ref|ZP_01081625.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917] gi|86166591|gb|EAQ67855.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917] Length = 248 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 10/242 (4%) Query: 4 HSHLKRLFV-----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + L+RL + + L + + + HYL VLR++ GD + + +G+ G W + + Sbjct: 1 MAELRRLLIQRSRLEPCLNSDRRLALNEREGHYLRRVLRLRPGDAVAVVDGEGGLWTAGL 60 Query: 59 SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYT 117 + + + + ++ +D +++ + E+G+ I+P+ + T Sbjct: 61 CSPAELALDPMAASDPAPAPSPLLGLAVVGVRRG-MDELMRMACELGVDRIQPLRSNWRT 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 R + A EQC+ L P + P ++ + A S Sbjct: 120 VQAEERPQRWQLILDEAVEQCERLWQPSLLPCRHVDDWWGELSSDAVKALATTRRDGLPS 179 Query: 178 LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L++ V + IGPE G+ ++E+ + + TP+S GP ILR+ TAAV+A+A Sbjct: 180 LQQWLNQQPDQAGMVWVAIGPEAGWTADEERAAEAKGW-TPVSCGPSILRTSTAAVSAVA 238 Query: 236 LV 237 + Sbjct: 239 QM 240 >gi|72381940|ref|YP_291295.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. NATL2A] gi|72001790|gb|AAZ57592.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str. NATL2A] Length = 254 Score = 179 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 21/253 (8%) Query: 4 HSHLKRLFVD-----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + +RLF+ + + K + ++ HYL V+RM+ D + + +GK W +KI Sbjct: 1 MAEKRRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKI 60 Query: 59 SYVGKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 K+I+ + Q ++ + K + +Q S E+G+ I+P+I++ Sbjct: 61 VEQ-KAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKG-FENFLQMSCEIGVDIIQPLISK 118 Query: 116 YTQNTHYNMD---RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + N + R + A EQ + L P + T + + Q+ FA Sbjct: 119 RSVVKECNNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--AT 176 Query: 173 GSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E+ + + + P+ V ++IGPEGG++ +E+E + FV +S+G ILR+ T Sbjct: 177 RIEDLPDCVTWVKETPHEVNQVWVVIGPEGGWNKDEEELAFNAGFV-GVSMGETILRTST 235 Query: 229 AAVAAMALVQAIC 241 AAV+A + V Sbjct: 236 AAVSA-SQVMTSW 247 >gi|297623572|ref|YP_003705006.1| hypothetical protein Trad_1341 [Truepera radiovictrix DSM 17093] gi|297164752|gb|ADI14463.1| protein of unknown function DUF558 [Truepera radiovictrix DSM 17093] Length = 237 Score = 179 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 20/244 (8%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M++H R+FV L + +G + +LA VLR++ G + F+G E + Sbjct: 1 MRVH----RVFVPH-LAAGERV-LTGREAQHLAQVLRVRPGARVRAFDGAGLEADGTVRE 54 Query: 61 VGKSIRFKVEY---QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 V +R +E +R V + +K ++L +++++ E+G RP ++R Sbjct: 55 VT-GLRVTLELGAPYAREVEAALRVTLAVALLKGDKLAEVVRRATELGAVGFRPFVSRRC 113 Query: 118 QNTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + R+R AA+Q +P + L L +V + Sbjct: 114 DVRELSANKLARLRRVAQEAAKQSGRSVVPPVAEAAPLAHLSLPAPT---LVAHPSAPRT 170 Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 E L A+ P + +L GPEGG +E L P+ LG RILR++TA VA Sbjct: 171 LG--ETLAALTPPPTALTVLTGPEGGLTEDELAALTERG-AHPIRLGARILRAETAPVAL 227 Query: 234 MALV 237 A + Sbjct: 228 TAAL 231 >gi|226356335|ref|YP_002786075.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus deserti VCD115] gi|226318325|gb|ACO46321.1| Conserved hypothetical protein [Deinococcus deserti VCD115] Length = 238 Score = 179 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 15/217 (6%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYI 85 + +L VLR+ G +L+F+G+ + + + + ++I E + + Sbjct: 29 EARHLY-VLRLSPGAEVLVFDGQGAQAQATVVELDAARAILHLGESIGAAAETPQPLTLA 87 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQCDILT 142 + +K ++L +++ + E+G+ ++ ++TR + R+ A++Q Sbjct: 88 VALLKGDKLADVVRAATELGVARVQLLVTRRADAREIGAQKLSRLNRIAEEASKQSRRAV 147 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 P + P TL W+ + +SL + V +L GPEGG + Sbjct: 148 TPPVLNPVTLADF--QWEGQLFV------AQPGSSLRLTQHLDWSAPVTVLTGPEGGLTT 199 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 EE L + ++ ++LGPRILR++TA VA + + A Sbjct: 200 EEVNQLTAKGALS-VTLGPRILRAETAPVALLGAIAA 235 >gi|296140458|ref|YP_003647701.1| hypothetical protein Tpau_2764 [Tsukamurella paurometabola DSM 20162] gi|296028592|gb|ADG79362.1| protein of unknown function DUF558 [Tsukamurella paurometabola DSM 20162] Length = 252 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 93/240 (38%), Gaps = 18/240 (7%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75 + GD+ + A V R++ G+ ++L +G G VGKS + + Sbjct: 13 APGEEYLLDGDEGRHAAAVRRIRVGEELVLSDGAGGFARCAAEAVGKSDVTVRCAQTWTV 72 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--------NTHYNMDRV 127 V + + K++R + ++ + E G I P + R Sbjct: 73 PAPSPRVIVVQALPKSDRAELAVELATEAGADEIVPWQAARCVARWDGAKSKAEKGVARW 132 Query: 128 RTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 R SAA+Q +P ++ T L LL + D N +V + + ++ Sbjct: 133 RAVARSAAKQARRAYVPRVHDLVTGRELIPLLTSMDANV-VVLHEGSAVPLGEVDFSVTT 191 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + V GPEGG EE + L ++ P LGP +LR+ TAA A+ + + W Sbjct: 192 TVVIVV----GPEGGISPEELDALVAMG-AQPALLGPTVLRTSTAAAVALGAIGVLTDRW 246 >gi|294812559|ref|ZP_06771202.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326440988|ref|ZP_08215722.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces clavuligerus ATCC 27064] gi|294325158|gb|EFG06801.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 247 Score = 178 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 12/236 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSR 74 T G + + V R+ G+ I+L +G+ + + ++ +V Sbjct: 15 APGTPFTLDGPEGRHAVSVRRLTSGEEIVLTDGQGRGAAGAVLRTEGKDTLVVEVRELRD 74 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHYNMDRVR 128 + + + + K +R + ++ E G+ I P + ++ + R Sbjct: 75 EPAPRPRITVVQALPKGDRGELAVETMTETGVDTIVPWSAARCITQWRGERGAKSLAKWR 134 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A +Q L P + T + + E + +L A Sbjct: 135 ATAREAGKQSRRLRFPEVADAATTKQVAALLAEADFAAVLHEEGAEALATAELPA---EG 191 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++ +++GPEGG EE + + P LG +LR+ TA A +AL+ G W Sbjct: 192 SIVLVVGPEGGVSPEELDAFAAAG-ARPFRLGHSVLRTSTAGTAGVALLLGRTGRW 246 >gi|322434914|ref|YP_004217126.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9] gi|321162641|gb|ADW68346.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9] Length = 255 Score = 178 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 19/223 (8%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 T +GDQ +LA VLR + G + ++I+ V + ++ Sbjct: 18 THAALTGDQAAHLARVLRAQPGQIFDVV-AAGFLHRAEITAVSPERVDFLLHEELESDSA 76 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISA 134 + + K + L++ I+K+ E+G I P++ R T+ ++R R A Sbjct: 77 LPLHLYLAIFKFDHLEWAIEKATELGAAKITPILARRTEKHLAQAAAKRVERWRRIAHEA 136 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHA------I 184 ++Q + P I PT L+ L+ +I+ ++ S +L + Sbjct: 137 SQQSRRTSTPEISDPTPLKQALERETAPHRILLSETEQSLTLSTALGAPRLDSETWDGIP 196 Query: 185 AHIPNV--AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ + A+ IGPEGG+ EE + T ++LGPRILR Sbjct: 197 SNSQEITHALAIGPEGGWTPEEMSLFTHHQW-THVTLGPRILR 238 >gi|254796435|ref|YP_003081271.1| hypothetical protein NRI_0035 [Neorickettsia risticii str. Illinois] gi|254589672|gb|ACT69034.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 232 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 123/236 (52%), Gaps = 15/236 (6%) Query: 6 HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L RLF++ + T+ + HYL V+R+++ +++FNG+ GEW++K+ Sbjct: 2 RLTRLFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEAQVIVFNGRSGEWIAKVDR--NF 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + ++ + ++ + D+ F+ K L ++++ E+ + +RP+ + +N + ++ Sbjct: 60 LVPDIQIRPQTASYPYDIHLCFAVPKHKALKETVRQATELDVTTLRPIYSSRAENKNKDL 119 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +++ + I AA+QC +++P + PP L + ++ + DET S + I Sbjct: 120 EKLELWAIEAAQQCRRMSIPILLPPIALREVETYHEN---VFICDETL----SDSVICDI 172 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + I+IGPEGG+ EE + +SLG ILR TAA +A+A V+++ Sbjct: 173 PILSSYTIVIGPEGGFSHEELSLI-----DKRISLGRTILRCSTAATSAIAQVRSV 223 >gi|254672585|emb|CBA06262.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 153 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 +D+ +QKSVE+G+ AI+PVI+ + + R + ISA EQ T+P + Sbjct: 1 MDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVL 60 Query: 148 PPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEK 205 P L + +++ S N KL I H + ++GPEGG+ +E+ Sbjct: 61 PIIGYREALDKMPSESTKLIM------SINRARKLGDIRHPSGAIVFMVGPEGGWTEQEE 114 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + F ++LG RILR++TA +AA+A +Q + GD+ Sbjct: 115 QQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 152 >gi|206900758|ref|YP_002251046.1| hypothetical protein DICTH_1217 [Dictyoglomus thermophilum H-6-12] gi|206739861|gb|ACI18919.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 247 Score = 178 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83 + +L +VLR++EG+ I + N + + + + K I ++ + + +V Sbjct: 20 DKEDIFHLVNVLRVREGEKINV-NYNLKIYETYVERIEKDKIVCRIIGELEDKESNVEVY 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 S K + +++K E+G+ P+ T+ + +R A +Q Sbjct: 79 LCQSLPKRESWEIILEKCTEIGVVGFIPLQTQRSIVNLSKDGLVKKYERWNKIIREAVKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIG 195 C LP +Y +LE L + + IV A E G+E L+ + I + + + IG Sbjct: 139 CGRNRLPLLYQVKSLEECLSLAREKDFDIVVAWE--GAELGLKDIMNRREIKDKIFLFIG 196 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 PEG + EE E + + ++GPRIL+ +TAA+ A AL+ G Sbjct: 197 PEGSFADEEIELMKKYGGI-FFNMGPRILKVETAAIVASALLLYEKG 242 >gi|88855039|ref|ZP_01129704.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1] gi|88815567|gb|EAR25424.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1] Length = 243 Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 16/248 (6%) Query: 7 LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62 + L++D L + + + + V R+K G+ + + NG I+ Sbjct: 1 MAHLYIDEELEDAKVGDTVSLTNAEARHAVTVSRLKVGETVAIGNGAGLVVSGPITTAEH 60 Query: 63 KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + +V R+ V + K +R + +Q + E+G+ + P + Sbjct: 61 TELTIEVANAERTARSTPAVFLAQALAKADRDELAVQVATELGIDGVIPWSAARSISRWQ 120 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 DR A++Q LP + T + L +V + + Sbjct: 121 GPKVAKGRDRWAAIVREASKQSLRTWLPDVLDLVTTKQLAAFAATTRMLVLEPTATETLS 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 LE ++ +++GPEGG E E L + + + LG +LR+ TA AA+A+ Sbjct: 181 ELEV-----DGRDIVLVVGPEGGVADHELELLTAAG-ASTVRLGNEVLRTSTAGPAALAV 234 Query: 237 VQAICGDW 244 + G W Sbjct: 235 LNVKLGRW 242 >gi|262039461|ref|ZP_06012765.1| YqeU [Leptotrichia goodfellowii F0264] gi|261746528|gb|EEY34063.1| YqeU [Leptotrichia goodfellowii F0264] Length = 235 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 9/229 (3%) Query: 13 DFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 D + + + +++ +V R+ +GD + + +G+ E+L++I+ + K Sbjct: 7 DKENITEKEITITDKSDCNHVQNVFRLGKGDGLRVIDGE-FEYLTEITNIAKKEIKLKII 65 Query: 72 QSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVR 128 + + ++ +K +++ I+K E+G+ I P+ T + ++ Sbjct: 66 KKNTDNYSLNINIDAAIGILKNEKMNMTIKKLTEIGVSKIIPLQTERVVVKINEKKEKWD 125 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A +QC + I P T L+ + N++ +IV+A E + L + + Sbjct: 126 ITVREALKQCKGVKFTEIVPVTKLQSI--NYELYDKIVYAYENSDNTEPLVNI-VNKNDK 182 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 N+ ++GPEGG EE L T +SLG RILR++TAA+ ++ Sbjct: 183 NILYIVGPEGGITEEEVNFLKEKG-ATEISLGKRILRAETAAIVIGGIL 230 >gi|269218584|ref|ZP_06162438.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211695|gb|EEZ78035.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848 str. F0332] Length = 287 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 P + +G + H+ A V R G+ I + +G+ G + V K + +V Sbjct: 52 PLPCRPGDRFVLAGPEGHHAATVKRASPGEEIDVVDGRGGRARCAVVGVSKGEVELEVLG 111 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDR 126 R + + + K +R D ++ + E G+ I P + R Sbjct: 112 FEREPDPSPRITLLQALAKGSRDDQAVETATEYGVWRIVPWASARAVANWKGKEEKARRR 171 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCGSENSLEKLHAI 184 + ++A++Q +P + T L + + +V +E + Sbjct: 172 WESIVLAASKQSRRSWVPEVLDVCTTPQALRLASAEGADLLVCHEEADMPIARA----GL 227 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 N+ I++GPEGG EE E+ + T + L P +LRS +A A+A + + G Sbjct: 228 QGSKNLWIVVGPEGGLTQEEIESFERIGGRT-VLLSPNVLRSSSAGPFAVAALSGMRG 284 >gi|320335223|ref|YP_004171934.1| ribosomal RNA small subunit methyltransferase E [Deinococcus maricopensis DSM 21211] gi|319756512|gb|ADV68269.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus maricopensis DSM 21211] Length = 228 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 20/237 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63 + R+ VD + + ++ +L VLR++ GD I +F+G+ E + +S + G Sbjct: 1 MHRVKVD---ALTPEMSVPAREWRHL-RVLRLRAGDTIRVFDGRGAEAEATVSALHEGGA 56 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 ++ + ++T Q V + +K ++L + + + E+G+ I+ + +RY Sbjct: 57 TLTLGASVEGAAETPQP-VTLAIALLKGDKLADVTRAATELGVARIQLLTSRYADVPDIG 115 Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R+R + A++Q P + P + L + + T Sbjct: 116 PAKLERLRRIALEASKQSRRAVTPDVLAPIPVTQLRADGPAF---IAHPGTHARLTDHLT 172 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A V ++ GPEGG+ E L F TP++LGPRILR++TA +A + + Sbjct: 173 WDAP-----VTVVSGPEGGWTDAEVTHLERAGF-TPVTLGPRILRAETAPLALLGAI 223 >gi|197120677|ref|YP_002132628.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K] gi|196170526|gb|ACG71499.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K] Length = 240 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L+R+ + + + + + HYL VLR+ G + LF+G+ G W + + +++ Sbjct: 3 LRRVHLPPERIGEGRAALTDEARHYLRDVLRLAPGAAVELFDGRGGAWEATVLDGFEALA 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + V + + K ++D ++QK+ E+G I P + + Sbjct: 63 LGARRAAPGGGAP--VWLLVALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKG 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R R AA QC +P + P L L S + Sbjct: 121 EARAARWRRIAEEAARQCGRADVPEVRAPAPLGAALAEVPAGFGAFVFHPGGASLSEA-- 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A + A ++GPEGG E+E SLGPR+LR++TAA+ A+AL+QA Sbjct: 179 --APSPAGGYAAVVGPEGGLTDAEREACARAG-ARDTSLGPRVLRAETAAIVAVALLQAR 235 Query: 241 CGD 243 GD Sbjct: 236 FGD 238 >gi|15806531|ref|NP_295243.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus radiodurans R1] gi|6459283|gb|AAF11086.1|AE001996_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 242 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 18/227 (7%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRS 75 + + +L HVLR++ G+ + +F+G+ GE ++ +S + SR Sbjct: 23 TMRLGPQETRHL-HVLRLRPGERVQVFDGRGGEAVAVLSELDAGHALLHLDPAAAAHSRG 81 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTI 132 V + +K ++L +++ + E+G I+ +IT + + + R+R Sbjct: 82 AEYPQPVTLAIALLKGDKLADVVRAATELGAARIQLLITAHAEARDIGAQKLVRLRRIAG 141 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA Q + +P + P L L W+ GS+ L L + + Sbjct: 142 EAARQSERRIVPDVLEPVPLTKL--TWEGQLLTAHP----GSQERLTDLLTWDAP--LTV 193 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L GPEGG + E E L ++LGPRILR++TA +A + + A Sbjct: 194 LSGPEGGLSTAEVEHLTRQG-ARLITLGPRILRAETAPLALLGAMAA 239 >gi|187251700|ref|YP_001876182.1| hypothetical protein Emin_1295 [Elusimicrobium minutum Pei191] gi|186971860|gb|ACC98845.1| Conserved hypothetical protein [Elusimicrobium minutum Pei191] Length = 230 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 17/229 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + + + +GD+ +L V+R EGDNI +F+G+ ++ + I V K I Sbjct: 1 MPQYIAE---ITGERFLITGDEAKHLFCVMRAAEGDNIKIFDGRGKKFNAVIKEVAKDIV 57 Query: 67 F-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NT 120 V + + ++ F+P+ ++ + ++ K ++G+ + PVIT T+ Sbjct: 58 VGSVISEIALRPLPYNLTLCFAPVDKSKTEEILDKCTQLGVSSFLPVITERTEHDILKKW 117 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +R I+A +QC+ +P + P E LK + + A E ENS+ Sbjct: 118 ENKKERWEQIIIAAVKQCETAFVPRLLAPQKFEQALKIP---GKTIIAYE---KENSVSL 171 Query: 181 LHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+ I IGP GG+ E E V ++LG I+R++T Sbjct: 172 SSAVKGEEKAIKIFIGPAGGFSPREVEEAVLQGAVL-VTLGVNIMRAET 219 >gi|227495124|ref|ZP_03925440.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM 15436] gi|226831576|gb|EEH63959.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM 15436] Length = 248 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 15/245 (6%) Query: 10 LFVD--FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIR 66 F D L + +G + H+ V+R+ G+ I L +G +S+ IS KS+ Sbjct: 6 YFHDDFTGLEVGKPFTFTGSEAHHAC-VMRVAPGEEIHLVDGHGLRVISEVISAADKSVT 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + + + + + K R + ++ + E+G+ + ++ T + Sbjct: 65 VRPREIKNETSIRPVTTLVQALAKGGRDEQAVEMATEVGIDKVIAWQSQRTIVKWEGKKQ 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 N+++ +A +Q +P + + + LL +V + E++LE+ Sbjct: 125 GKNLEKWSNLLKAATKQSRRSRIPTVDYAESTKSLLNKLTDAKLLVLHE---SGEHTLEQ 181 Query: 181 LHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +A+++GPEGG E + + +G ++RS TA A+ALV Sbjct: 182 IPTEWFDTTEIALIVGPEGGITEAELAAFTAQG-AQIVRIGNTVMRSSTAGTVALALVNY 240 Query: 240 ICGDW 244 + G + Sbjct: 241 LSGRY 245 >gi|256828472|ref|YP_003157200.1| hypothetical protein Dbac_0661 [Desulfomicrobium baculatum DSM 4028] gi|256577648|gb|ACU88784.1| protein of unknown function DUF558 [Desulfomicrobium baculatum DSM 4028] Length = 244 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 7/236 (2%) Query: 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + L ++ L + G+++H+L VLR K G+++ LF+G+ + I + K Sbjct: 1 MARLNSFYLAPALW-REPFSLEGEEFHHLTRVLRAKAGESVRLFDGRGRWGIFCIRDLSK 59 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120 + + + + K R ++++K+VE+G + +Q Sbjct: 60 KSASLQRLSEQTAPAPACPLILAVGWSKGLRRGFLLEKAVELGAAEVWLWQAARSQGEVP 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 D +AA+QC LP I ++ V E + Sbjct: 120 QEGKDGWERQLTAAAKQCGASRLPQIRTFAGPADVISAAVDLGSKVLCWEQEENGFVDPT 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L A ++A+L GPEGG +E + F P+ LGP ILR +TAAV ++L Sbjct: 180 LLAHRRG-SIAVL-GPEGGLERKEADLFREHGFA-PVGLGPNILRFETAAVLVLSL 232 >gi|217967714|ref|YP_002353220.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724] gi|217336813|gb|ACK42606.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724] Length = 246 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 12/226 (5%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83 + ++ +VLR++EG+ I + N + + + + + K+ + ++ +V Sbjct: 20 DKEDIFHMVNVLRIREGEKIDV-NYNSKIFRAYVEKIEEDRVICKIIEKIGNKEANVEVY 78 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137 S K + +++K E+G+ P+ T+ + + R A +Q Sbjct: 79 LCQSLPKKESWEIILEKCTEIGVVGFIPLQTQRSIVNLSRDELNKKYQRWNKVIKEAVKQ 138 Query: 138 CDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 C LP +Y TLE L N I+ A E G+E SL+ + + + IGP Sbjct: 139 CGRNKLPLLYKVQTLEESLNLAKKENADILIAWE--GAELSLKNIIRNNIRDKIFLFIGP 196 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 EG + EE + + ++GPRIL+ +TAA+ A AL+ G Sbjct: 197 EGSFTDEEINLMKKYNGI-FFNMGPRILKVETAAIVASALLLYEKG 241 >gi|194477277|ref|YP_002049456.1| hypothetical protein PCC_0836 [Paulinella chromatophora] gi|171192284|gb|ACB43246.1| hypothetical protein PCC_0836 [Paulinella chromatophora] Length = 257 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 15/247 (6%) Query: 6 HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 L+RLF+ L + K + HYL VLR + GD + +G W + + ++ Sbjct: 3 ELRRLFISHHRLGYSNEFKLRASESHYLTKVLRYRIGDCFAVIDGVGRLWSAILMDRERA 62 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQ-NTHY 122 + T Q + R D ++Q + E+G+ I+P+I ++ N Sbjct: 63 QLEQKITIPLVSTMAPSPQLELAIALPRRGFDDLLQITSELGIDRIQPLIVKHCVTNKDI 122 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFADETCGSEN 176 ++DR + + EQC+ L PF P ++ D + +FA G Sbjct: 123 SLDRCKAILQESTEQCERLWTPFCGDPCLFYNWIEQKDSDAAKNETRVKLFATTRRGGLI 182 Query: 177 SLEKL-----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 SL KL I+ ++++ IGPEGG+ E++ + + +SLGPRIL++ TAA+ Sbjct: 183 SLVKLLNQNSSKISLSQSLSLAIGPEGGWTLNEEQRAEAAGW-QAVSLGPRILKTRTAAI 241 Query: 232 AAMALVQ 238 A A++ Sbjct: 242 VAGAIMS 248 >gi|253583198|ref|ZP_04860396.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251833770|gb|EES62333.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 237 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 10/218 (4%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 ++L +V R+K + I +G+ E+ K+ + K Q V+ Sbjct: 20 EKSDINHLKNVFRVKLDEKIRAVDGE-KEYFCKVVSIDKKEIILEIEQIFEDRYSHKVKI 78 Query: 85 --IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDIL 141 +K +++D IQK E+G+ I P+ + D+ A +QC + Sbjct: 79 DAALGILKNDKMDLAIQKLTEIGVNKIIPLAVKRGVVKITEKKDKWDLIVREALKQCQAV 138 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEGG 199 I LE + ++ I+ E C E +L+ L + + +IG EGG Sbjct: 139 KATEIDEVKKLEEI--EFEEYDLIIVPYE-CEEEYTLKNLLRNEEKSPKKILYIIGSEGG 195 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + EE E L ++LG RILR++TA++ ++ Sbjct: 196 FDPEEIEFLKRKK-ANIVTLGRRILRAETASIVVGGIL 232 >gi|108800424|ref|YP_640621.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. MCS] gi|119869553|ref|YP_939505.1| hypothetical protein Mkms_3521 [Mycobacterium sp. KMS] gi|108770843|gb|ABG09565.1| protein of unknown function DUF558 [Mycobacterium sp. MCS] gi|119695642|gb|ABL92715.1| protein of unknown function DUF558 [Mycobacterium sp. KMS] Length = 248 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 18/248 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD + GD + +V R + G+++ L +G + VGK + + Sbjct: 5 FYVDALPGLGELAVVDGDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTAR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121 V + V + + K++R + ++ + E G A+ Sbjct: 65 VLERRTVTPPAPAVTVVQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAGKVD 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSEN 176 + R R SAA Q +P + T L++ D +V + G Sbjct: 125 KGLRRWRAVVRSAARQSRRAHIPPVDGVVTTAELVRRVTAEVADGATVLVLHESATGPLT 184 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ A A V +++GPEGG EE + L + V + LGP +LR+ TAA + Sbjct: 185 GVDLTQARA----VTLIVGPEGGIADEELDALTAAGAV-AVRLGPTVLRTSTAAAVGLGA 239 Query: 237 VQAICGDW 244 + + W Sbjct: 240 LGVLTPRW 247 >gi|302869298|ref|YP_003837935.1| hypothetical protein Micau_4850 [Micromonospora aurantiaca ATCC 27029] gi|302572157|gb|ADL48359.1| protein of unknown function DUF558 [Micromonospora aurantiaca ATCC 27029] Length = 244 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 13/241 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 LF+ L G + H+ A V R++ G+ ++L +G+ G + ++ VG+ ++ + Sbjct: 5 LFLVEALPTGDTLTLDGPEGHHAATVQRLRAGEELVLADGRGGTAAAVVTAVGRGTLDLR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 V + + + + K +R + +Q E+G+ I P Sbjct: 65 VTSRGYADAPVPRLVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGDRGGR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + AA+Q LP + P + + + E + Sbjct: 125 ARQKWVATAREAAKQARRPWLPVVAGAPDESTASVARRIAGAAGAFVLHEGAHDRLTTVD 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A + +++GPEGG E T + LGP +LR+ TA VAA+ ++ Sbjct: 185 LPA---TGEIVLVVGPEGGIADHELAAFADAGART-VRLGPSVLRTSTAGVAALTVLATR 240 Query: 241 C 241 Sbjct: 241 L 241 >gi|15604043|ref|NP_220558.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia prowazekii str. Madrid E] gi|6226337|sp|Q9ZDZ5|RSME_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|3860734|emb|CAA14635.1| unknown [Rickettsia prowazekii] Length = 198 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 113/201 (56%), Gaps = 8/201 (3%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 MK + R++++ L ++ + + D HY+ VLR+K D++ +FNG DGE+L++I+ Sbjct: 1 MKYN----RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQ 56 Query: 61 VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 +GK+ + ++ Q + +S + + IK+++L I + ++G+ I P+ITR Q Sbjct: 57 IGKNNLSVVLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQF 116 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 N++R+ I A EQ + L P I TL+ LK +N I++A+E ++S+ Sbjct: 117 RTVNIERLMKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEHEKVKHSIL 174 Query: 180 KLHAIAHIPNVAILIGPEGGY 200 + ++ ++AI+IGPE G Sbjct: 175 HISSLLS-KDIAIIIGPEEGL 194 >gi|300813571|ref|ZP_07093902.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512319|gb|EFK39488.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 230 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 34/239 (14%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKE--------GDNILLFNGKDGEWLSKI 58 + R F + + + H+L +V+R+K+ D I+LFN KD Sbjct: 1 MYRFF--EDRNYDNINELNKENLHHLKNVIRIKDDEDFSVVFNDKIILFNLKD------- 51 Query: 59 SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 + +K E S + F +K ++ + +I+ E+G+ P+I Sbjct: 52 ----DRLIYKKEI-FDSNEPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCV 106 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + R + SAA Q +P ++ P ++ + KN+ + + + DE Sbjct: 107 SNISDKVDKKIQRWQKIAKSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDE--- 163 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N K N+AI++GPEGG E E L +SLG RILR++T++V Sbjct: 164 -RNLFFKDIKEKLSKNLAIIVGPEGGISKREIEVLKDA---HRISLGKRILRAETSSVV 218 >gi|282883131|ref|ZP_06291730.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus lacrimalis 315-B] gi|281296943|gb|EFA89440.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus lacrimalis 315-B] Length = 230 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 34/239 (14%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEG--------DNILLFNGKDGEWLSKI 58 + R F + + + H+L +V+R+K D I+LFN KD Sbjct: 1 MYRFF--EDRNYDNINELNKENLHHLKNVIRIKADEDFSVVFKDKIILFNLKD------- 51 Query: 59 SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 + + S + F +K ++ + +I+ E+G+ P+I Sbjct: 52 -----DMLIYKKEIFDSNEPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCV 106 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + R + SAA Q +P ++ P ++ + KN+ + + + DE Sbjct: 107 SNISDKVDKKIQRWQKIAKSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDE--- 163 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N K N+AI++GPEGG E E L +SLG RILR++T++V Sbjct: 164 -RNLFFKDIKEKLSKNLAIIVGPEGGISKREIEVLKDA---HRISLGKRILRAETSSVV 218 >gi|145595966|ref|YP_001160263.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora tropica CNB-440] gi|145305303|gb|ABP55885.1| protein of unknown function DUF558 [Salinispora tropica CNB-440] Length = 244 Score = 175 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 13/244 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 LF+ L +G + H+ A V R++ G+ +LL +G G ++ ++ VGK ++ + Sbjct: 5 LFLVESLPTAETATLNGPEGHHAATVQRLRAGEELLLADGCGGTAVAVVTAVGKGALELR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 + + + + K R + +Q E+G+ I P Sbjct: 65 ITSRDHVDAPAHRLVVVQGLAKGERGELAVQAMTEVGVDTIVPWTAGRSVTQWRGDRGVR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + AA+Q LP + P + + E G + Sbjct: 125 ARGKWVATAREAAKQARRAWLPVVAGAPAEDTSAVARRIAQAAAAFVLHEQAGERLVTAE 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + +++GPEGG E T + LG +LR+ TA VAA++++ A Sbjct: 185 L---PDRGEIVLVVGPEGGVAPGELAAFAEAGART-VRLGSSVLRTSTAGVAALSVLAAR 240 Query: 241 CGDW 244 G W Sbjct: 241 LGRW 244 >gi|315504227|ref|YP_004083114.1| hypothetical protein ML5_3449 [Micromonospora sp. L5] gi|315410846|gb|ADU08963.1| protein of unknown function DUF558 [Micromonospora sp. L5] Length = 244 Score = 175 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 13/241 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 LF+ L G + H+ A V R++ G+ ++L +G+ G + ++ VG+ ++ + Sbjct: 5 LFLVEALPTGDTLTLDGPEGHHAATVQRLRTGEELVLADGRGGTAAAVVTAVGRGTLDLR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 V + + + + K +R + +Q E+G+ I P Sbjct: 65 VTSRGYADAPVPRLVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGDRGGR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + AA+Q LP + P + + + E + Sbjct: 125 ARQKWVATAREAAKQARRPWLPVVAGAPDESTASVARRIAGAAGAFVLHEGAHDRLTTVD 184 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A + +++GPEGG E T + LGP +LR+ TA VAA+ ++ Sbjct: 185 LPA---TGEIVLVVGPEGGIADHELAAFADAGART-VRLGPSVLRTSTAGVAALTVLATR 240 Query: 241 C 241 Sbjct: 241 L 241 >gi|126436047|ref|YP_001071738.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JLS] gi|126235847|gb|ABN99247.1| protein of unknown function DUF558 [Mycobacterium sp. JLS] Length = 248 Score = 175 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 18/248 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD + GD + +V R + G+++ L +G + VGK + + Sbjct: 5 FYVDALPGLGELAVVDGDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTAR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121 V + V + + K++R + ++ + E G A+ Sbjct: 65 VLERRTVTPPAPAVTVVQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAAKVD 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCGSEN 176 + R R SAA Q +P + T L+ + D +V + G Sbjct: 125 KGLRRWRAVVRSAARQSRRAHIPPVDGVVTTAELVCRVTAEVADGATVLVLHESATGPLT 184 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++ A A V +++GPEGG EE + L + V + LGP +LR+ TAA + Sbjct: 185 GVDLTQARA----VTLIVGPEGGIADEELDALTAAGAV-AVRLGPTVLRTSTAAAVGLGA 239 Query: 237 VQAICGDW 244 + + W Sbjct: 240 LGVLTPRW 247 >gi|269123850|ref|YP_003306427.1| hypothetical protein Smon_1088 [Streptobacillus moniliformis DSM 12112] gi|268315176|gb|ACZ01550.1| protein of unknown function DUF558 [Streptobacillus moniliformis DSM 12112] Length = 233 Score = 175 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 102/215 (47%), Gaps = 9/215 (4%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT--KQSDVQYI 85 + +++ +V R+KE D + + + + E+ + + K + ++ Sbjct: 21 EINHIKNVFRLKENDEVRVIDFE-YEYKGIVKEINKKNILISISDKKEDNYSLSFNLDVA 79 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHYNMDRVRTYTISAAEQCDILTLP 144 +K ++ +IQK E+G+ I P+ T + ++ + +QC + Sbjct: 80 IGLLKNEKMKLLIQKLTELGIRNIIPLKTERVVVKINEKKEKWDLVVRESMKQCRAIKKT 139 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + ++ + +++ +I++A E S +L+++ N+ ++IGPEGG+ +E Sbjct: 140 NVEILNEIKRI--KYENYDKIIYAYENSESSLNLKEIIK-KEDSNILLIIGPEGGFTKDE 196 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVA-AMALVQ 238 + L S+ + +SLG RILR++TAA+ A +++ Sbjct: 197 VKYLKSIGAIE-ISLGKRILRAETAAIVLAGSIIN 230 >gi|119716137|ref|YP_923102.1| 16S ribosomal RNA methyltransferase RsmE [Nocardioides sp. JS614] gi|119536798|gb|ABL81415.1| protein of unknown function DUF558 [Nocardioides sp. JS614] Length = 246 Score = 175 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 88/219 (40%), Gaps = 13/219 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQ 76 ++ GD+ H+ V R++ G+ ++L +G + +S GK + VE Sbjct: 16 AGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRVFTVAVESVRVEP 75 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 + V + + K R + ++ E+G+ I P + + ++ R R Sbjct: 76 EPEPAVVVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRAT 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPN 189 AA+Q + P + P + +++ + +V ++ G L+ + Sbjct: 136 AREAAKQSRRMRFPSVAPLASTGDVVELLGAADLAVVLHEDATGPVAGLD----VPAAGR 191 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +++GPEGG +E V + LG +LR+ T Sbjct: 192 IVVVVGPEGGLTEDEVAIFVGAGAVC-VRLGAEVLRTST 229 >gi|220915389|ref|YP_002490693.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] gi|219953243|gb|ACL63627.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] Length = 240 Score = 175 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 L+R+ + + + + + HYL VLR+ G + LF+G+ G W + + +++ Sbjct: 3 LRRVHLPPERIGEGRAGLTDEARHYLRDVLRLAPGAAVELFDGRGGAWEATVLDGFEALA 62 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 + V + + K ++D ++QK+ E+G I P + + Sbjct: 63 LGARRAAPGGGAP--VWLLVALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKG 120 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 R R AA QC +P + P L L + + Sbjct: 121 EARAARWRRIAEEAARQCGRADVPEVRAPAPLGAALAEVPAGFGAFVFHPGGAALSEA-- 178 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 A + A ++GPEGG E+E SLGPR+LR++TAA+ A+AL+QA Sbjct: 179 --APSPAGGYAAVVGPEGGLTDAEREACARAG-ARDTSLGPRVLRAETAAIVAVALLQAR 235 Query: 241 CGD 243 GD Sbjct: 236 FGD 238 >gi|88608373|ref|YP_505938.1| hypothetical protein NSE_0036 [Neorickettsia sennetsu str. Miyayama] gi|88600542|gb|ABD46010.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 227 Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 122/222 (54%), Gaps = 14/222 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 T+ + HYL V+R+++ +++FNG+ GEW++K+++ + ++ + ++ + Sbjct: 11 GTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNH--NFLVPDIQIRPQTASY 68 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138 D+ F+ K L +++++ E+ + +RP+ + T+N + +++++ + I AA+QC Sbjct: 69 PYDINLCFAVPKHKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQC 128 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +++P + PP L+ + ++ + DET S + I + + I+IGPEG Sbjct: 129 RRMSIPVLLPPIALKEVETYHEN---VFICDETL----SDSVICDIPILSSYTIVIGPEG 181 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 G+ EE ++ +SLG ILR TAA +A+A V+++ Sbjct: 182 GFSHEELSLINKR-----ISLGRTILRCSTAATSAIAQVRSV 218 >gi|320535676|ref|ZP_08035766.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] gi|320147468|gb|EFW38994.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] Length = 256 Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 17/249 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63 +K+L V+ + + K SG YHYLA VLR + GD ++L G ++I + K Sbjct: 1 MKQLLVNAEVDVDGTVKLSGKDYHYLATVLRKRIGDIVILDLPSCGTVAAEIIDIRAQKK 60 Query: 64 SIRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---Q 118 + +++ + +Q ++ + I+ ++D +I+++ E+G+ I P+ ++ + Sbjct: 61 ELDLQIKTGLEGLTQPPPFEIVLLQWLIRGQKMDSVIRQATELGVSRIIPIAGEFSLIKE 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFADETC 172 +R R A +Q + I TL+ LKN + +++F ++ Sbjct: 121 ENEKQTERRRRIIKEARQQSGSVIQTEISSVQTLDCALKNLNTAYQKSSIVKLLFTEKKS 180 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +S+ + V I IG EGG +E L + F+ P+ L ILR++TAA+ Sbjct: 181 A--DSMLHTCLSSRPKTVIIAIGAEGGMSVQEVTGLKNAGFI-PVHLHTNILRAETAAIP 237 Query: 233 AMALVQAIC 241 A A V I Sbjct: 238 ACAAVHTIL 246 >gi|119962358|ref|YP_947974.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter aurescens TC1] gi|119949217|gb|ABM08128.1| putative protein of unknown function (DUF558) [Arthrobacter aurescens TC1] Length = 255 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 13/240 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75 + G + + V R+ G+ + + +G + G S + K Sbjct: 17 VPGSTFVLEGAEARHAVTVKRLTTGEPVDIADGAGVRLTGTVVDAGSSTLTVKASEVLFE 76 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129 + + + + + K +R + I+ + E+G+ A+ P + + + ++ Sbjct: 77 EQPEVRLVLVQALAKGDRDELAIETATELGIDAVIPWQSERAIVRWKGERAAKAHAKWQS 136 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS----LEKLHAI 184 +AA+Q +P + L K D + I+ ++ + L L Sbjct: 137 VVTAAAKQARRAWIPEVRSIVDTVALAKAVADADMAIILHEDAKNPLRTVLEELAALPNE 196 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L VT L LG +LRS TA AA+ L + G W Sbjct: 197 GKPREVLLIVGPEGGISPREVTRLSDSGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 255 >gi|261367268|ref|ZP_05980151.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM 15176] gi|282570870|gb|EFB76405.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM 15176] Length = 242 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Query: 7 LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R F Q +G H+LA+V+R + G+ ++L E+ ++ + Sbjct: 1 MPHRYFTRE--LADGQAALTGSDAHHLANVMRARAGEEVVLCGPDGLEYTGTVTAIQPGR 58 Query: 65 IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 + F V + S+ + V K +LD +I+ SVE+G+ I P +RY + Sbjct: 59 VEFSVSEGAPSKAEPDMAVTLFVGYPKQGKLDEIIRHSVELGVHEIIPFFSRYCVAAPKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178 +R AA+Q +P + P + + + + +F E GS L Sbjct: 119 EDAKNERYNRIAAEAAKQAGRAQIPHVAMPLENFDAVCRALSAYDKSLFFYEGGGS--PL 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 +L +A++ G EGG+ +E + + + LGPRILR + Sbjct: 177 RELLTPGCAQRLALVTGSEGGFSTE-EAAAAAEAGAMTVGLGPRILRCE 224 >gi|257068884|ref|YP_003155139.1| hypothetical protein Bfae_17280 [Brachybacterium faecium DSM 4810] gi|256559702|gb|ACU85549.1| conserved hypothetical protein TIGR00046 [Brachybacterium faecium DSM 4810] Length = 262 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 17/242 (7%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQ 76 G++ + A V R+ G+ +LL + + L++++ K +E + + Sbjct: 21 GDPLVLDGEEGRHAAKVARIGVGEQVLLTDAPGRQALAEVTVAKKEALELRLLEDPTGAV 80 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 + + + + R + ++ + E+G I P I R + + R + Sbjct: 81 QRLPRLGLVQALATGGRDEQAVESATELGADRIVPWIARRSVSVWRGEKLRKGRSRWQAT 140 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFAD-ETCGSENSLEKLHAI 184 +A +QC +P + P T LL +V + E+ G + E+L Sbjct: 141 VRAAVKQCRRPGIPAVDPAVTTTELLAALRERTAAGALVLVLHEQESVGLMSLAEQLRTA 200 Query: 185 AH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + + + +++GPEGG EE LH + LGP +LRS TA AA+A++ A+ G Sbjct: 201 SEDGLEEILLVVGPEGGIAPEELTALHETG-ARSVLLGPEVLRSSTAGPAALAVLSALVG 259 Query: 243 DW 244 W Sbjct: 260 RW 261 >gi|222833711|gb|EEE72188.1| predicted protein [Populus trichocarpa] Length = 158 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 +D++I+K+VE+G+ AI+P+ + + + +A EQC LP + Sbjct: 1 MDWLIEKAVELGVSAIQPLQAARSVVRLSGERATKRQAHWQALIEAACEQCGRNRLPALA 60 Query: 148 PPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEK 205 P LE L + ++ + S L + A V +LIGPEGG EE+ Sbjct: 61 PVANLESWLTSVPATAARLALSPRASASLPELAQAEREAWRAGGVTLLIGPEGGLSPEEE 120 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + F+ +SLGPRILR++TA + +A + AI G + Sbjct: 121 DRARRAGFI-GVSLGPRILRTETAGLTCLATLNAILGGF 158 >gi|116490649|ref|YP_810193.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1] gi|290890063|ref|ZP_06553146.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429] gi|116091374|gb|ABJ56528.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1] gi|290480254|gb|EFD88895.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429] Length = 253 Score = 174 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 18/238 (7%) Query: 9 RLFVDFPLCIKTQGKASG----DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R F++ + K S D +H+L VLR+K+ D + L G+ +L +++ + Sbjct: 4 RFFLENSQEFLSGNKISKKNNPDVFHHLKDVLRVKDKDLVELVAGQ-SAYLVRVNEISAM 62 Query: 65 IRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 F +++ S+ + +K++ LD++IQK+ E+G+ I Y+ Sbjct: 63 EVFFNRLDKLSKDPEIPVKTTIVVPLLKSDHLDWLIQKATELGVFKIILTNFSYSVVKDI 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--CGSEN 176 + R AAEQ L +P I DH IV +E+ G ++ Sbjct: 123 KIEKKLQRYEKIVKGAAEQSHRLLVPEIIYEKKFIEQAGLSDHQIGIVAWEESAKAGEKS 182 Query: 177 SLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +L K+ +A + + + + GPEGG +E + L S F+T LGPRILR++TA Sbjct: 183 NLFKMIRLAKLDSKFNEIVAVFGPEGGISKKEIKKLESSGFITA-GLGPRILRAETAP 239 >gi|302343725|ref|YP_003808254.1| hypothetical protein Deba_2298 [Desulfarculus baarsii DSM 2075] gi|301640338|gb|ADK85660.1| protein of unknown function DUF558 [Desulfarculus baarsii DSM 2075] Length = 251 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 8/240 (3%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 +R V+ + + + + VLR+ GD + L +G ++++ +GK Sbjct: 4 RRFLVEPAALDGPEARLDASEAAHARKVLRLNVGDEVWLVDGHGRRAKARLTSLGKGGAS 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHY 122 ++E R + + K +D++ + E+ + +RP + + + Sbjct: 64 CRIEAVERLTPLRPRLVICPGLAKGPAMDFLAARLTELAVDEVRPFLAARGEVRLRDEDQ 123 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R R A +QC LP + P LE LL + E + L Sbjct: 124 RLERWRRLAGQALKQCGAPLLPEFFAPLDLEALLALAPARAARLILYEGEDGRAMAQVLA 183 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 V LIGPEGG+ + E + ++ F TP LG ILR++TA +A A+ A G Sbjct: 184 EAEGPAEVWALIGPEGGFTAAEVDRAAAVGF-TPCGLGGVILRAETACLAVAAV--ARFG 240 >gi|113955056|ref|YP_730866.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9311] gi|113882407|gb|ABI47365.1| conserved hypothetical protein TIGR00046 [Synechococcus sp. CC9311] Length = 254 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 10/243 (4%) Query: 3 IHSHLKRLFVDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + + L+RL ++ D+ HYL VLR++ G + + +G+ W + Sbjct: 1 MVAELRRLLIEPKRLADRDGNGCLVLRDDERHYLRRVLRLRSGSPVAVVDGRGHLWEGSL 60 Query: 59 SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 G + ++ + K + + ++ +D +++ + E+G+ I+P+ + Sbjct: 61 QEEG-QLLLPNSCETTTPAKTPQLGLAIALVRRG-MDDVMRMACELGVDCIQPLQAARST 118 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 Y +R + A EQC+ L +P + P + + +N + A + Sbjct: 119 PQADYKPERWQLILKEAVEQCERLWMPRLLPLASTDDWWTMHGNNDTLAIATTRLEELTA 178 Query: 178 LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 LE + + + + IGPEGG+ E+ S + P+SL ILRS TAA+A + Sbjct: 179 LEPWLRRQTLKDNCIWLAIGPEGGWDPLEQAKALSEGWA-PISLSEDILRSSTAAIAGVT 237 Query: 236 LVQ 238 + Sbjct: 238 TLS 240 >gi|126642376|ref|YP_001085360.1| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978] Length = 157 Score = 173 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 14/161 (8%) Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDIL 141 K +R+DY IQK+ E+G+ I+ + + + +D + I+A EQC + Sbjct: 1 MSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLN 60 Query: 142 TLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P + P +L L + D + V A E + L I P +A+LIGPEGG Sbjct: 61 LVPEVLAPISLHEWLNSSDLPVSKFVLAPEKEQK----DVLAGIQ--PELALLIGPEGGL 114 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E + F+ +G R+LR++TA V A++++ Sbjct: 115 SDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSILNYRF 154 >gi|78357040|ref|YP_388489.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219445|gb|ABB38794.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 238 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 13/237 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++ F+ P Q G + H++ VLRM+ GD + +GK E L I + K S+ Sbjct: 1 MRTFFL-SPDEWDRQCTLRGSEAHHMIKVLRMRAGDTCRILDGKGREGLFIIRGMDKNSV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM- 124 + ++ S K+ R ++ +K+VE+ I +Q+ +M Sbjct: 60 QLELAETVMHPEPHSRAYIALGWGKSVRRSWIFEKAVELEAAGIWLWQAARSQSKMPDMT 119 Query: 125 -DRVRTYTISAAEQCDILTLPFIYP----PTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + ++ A+QC +P + T L L + +D + + + + +L Sbjct: 120 KESWHSQLVAGAKQCVNPWIPELKSVAAGVTGLVELAQGFD--RKFILWE--GEAREALL 175 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + +IGPEGG+ +E L F SLG RILR +TAA+ + L Sbjct: 176 SGETLGTSGDTLFVIGPEGGFADDEVSLLKESGFAAA-SLGNRILRWETAALLCLGL 231 >gi|111221445|ref|YP_712239.1| 16S ribosomal RNA methyltransferase RsmE [Frankia alni ACN14a] gi|111148977|emb|CAJ60657.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 255 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 90/248 (36%), Gaps = 26/248 (10%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS 80 SG + + A V R++ G+ + + +G+ + V + I V + + Sbjct: 2 FTLSGPEGRHAATVRRLRPGEPVDVTDGRGAALECAVVAVRRDEIDCAVRRRVDAAVPHP 61 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISA 134 + + + K +R + ++ E+G+ I P V+ + +R A Sbjct: 62 RLVVVQALAKGDRGERAVEMLTEVGVDEIVPWSAARSVVRWDGERGGRARERWVRAAAEA 121 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------SENSLEKLHAI---- 184 ++Q L P + L + V E G + S L + Sbjct: 122 SKQSHRLHWPVVGDLVGTAELTRRVASAALAVVLHEQAGDPLVGLARRSAAALDGVTAVA 181 Query: 185 --------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +++GPEGG E + LH V LGP +LR+ TA V A ++ Sbjct: 182 SVASAAQPNPAAEILLVVGPEGGIADAEVDALHQAGAVVA-RLGPTVLRTSTAGVVASSV 240 Query: 237 VQAICGDW 244 V A G W Sbjct: 241 VLADLGRW 248 >gi|50955092|ref|YP_062380.1| hypothetical protein Lxx14630 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951574|gb|AAT89275.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 241 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 13/239 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEY 71 D I + +G + + V R + G+ IL+ NG+ ++ G + V Sbjct: 9 DLDAAIGDRLTLTGPEARHAVTVNRTRPGERILIGNGRGLVAAGEVLVATGSELTIDVAA 68 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMD 125 R Q ++ + + + K +R + IQ + E+G A+ P + + Sbjct: 69 LDRIQRREPAITLVQALAKGDRDERAIQAATELGADAVIPWAAARSVSRWEGTKIAKGRE 128 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R T A +Q P + +T + + +V G Sbjct: 129 RWATIVREAGKQSLRPWTPEVGELSTTRQIAALAVTHRVLVLEPSAGG-----RLTDVTP 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E + + L LG ILR+ TA AA+A++ A W Sbjct: 184 DARPLALVVGPEGGIDPAELDVFRAAG-AELLRLGDTILRTSTAGPAALAVLSAATRRW 241 >gi|328953124|ref|YP_004370458.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca acetoxidans DSM 11109] gi|328453448|gb|AEB09277.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca acetoxidans DSM 11109] Length = 261 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 +R F + S + H+L V+R+ GD + + +G + ++I + + Sbjct: 19 RRFFAGLNQFRGDEVILSPSESHHLIRVVRLAVGDRVEVSDGCGRIFEAEILSLEPTAAR 78 Query: 68 KVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----T 120 S + + ++ D +I++ E+G+ + P + + Sbjct: 79 LRLLNELSVGIESSLKITLGLALVRAEIFDSLIRQVTELGIYRLVPFTSTRSLVRPGGWK 138 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + R + A + L LP I PP L +++F +E + Sbjct: 139 KSRLLRWQRLAQEALKSSQRLILPEIDPPVDFPDAL-IGPEEVKLMFWEEQRQAHRP-HD 196 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L A + LIGPEGG+ + E +T F L LGPR LR +T Sbjct: 197 LAAWPRPRTIRALIGPEGGFTAAEADTARQAGFNL-LGLGPRRLRVET 243 >gi|54020067|ref|YP_115694.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae 232] gi|6226420|sp|O50188|RSME_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|2654771|gb|AAC32528.1| unknown [Mycoplasma hyopneumoniae] gi|53987240|gb|AAV27441.1| putative 26.3 kda protein in cilium adhesion operon (orf5) [Mycoplasma hyopneumoniae 232] Length = 227 Score = 172 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 102/234 (43%), Gaps = 17/234 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ + + +++ V R+K +N + ++ +L ++ Sbjct: 1 MYRFFVNEKQ--ENFFILTNLTLNHIKTV-RIK-NENFICV-YQNEFYLVRLVPNSNKAE 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQNTH 121 +E + ++ V + +KT ++ IQK+VE+G+ I P ++ + + Sbjct: 56 I-IEKIKGNNEPKNKVVLALAILKTKSFEFAIQKAVEIGVNEIWPFYSKNVSQKLSGDLE 114 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + +A+Q +P I P + LL+ + + + E + + Sbjct: 115 KKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNI 169 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + N I+IGPEGG+ E + L F ++LG RILRS+TAA+ + Sbjct: 170 NIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 222 >gi|302528840|ref|ZP_07281182.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437735|gb|EFL09551.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 245 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 21/232 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK----SIR 66 F+ + + + G++ + A V R++ G+ ++L +G + V S+ Sbjct: 4 FLAPAVPAEGRALLDGEEARHAATVRRLRVGEQLVLSDGAGAMARCAVDAVEAGRAASVT 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------N 119 V + + + V + K +R + ++ + E G AI P + Sbjct: 64 LTVLERWQEEPPALRVHVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWDDGPR 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT---TLEFLLKNWDHNCQIVFADETCGSEN 176 + R R SAA+Q +P + P L L + G + Sbjct: 124 GEKALARWRATARSAAKQARRAHVPAVAEPVGTRELAQLAATMSATLVL-----ESGVAS 178 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 L L A+ ++ +++GPEGG EE L T + LGP +LR+ T Sbjct: 179 KLADL-ALPDGGDLLLVVGPEGGITDEELALLEESG-ATTVRLGPTVLRTST 228 >gi|257467709|ref|ZP_05631805.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185] gi|317062002|ref|ZP_07926487.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313687678|gb|EFS24513.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 237 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 8/217 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84 ++L +V R+K + I +G+ E+ K+ + K Q V+ Sbjct: 20 EKSDINHLKNVFRIKLDEEIRAVDGE-KEYFCKVVSIDKKEIILEIEQIFEDRYSHKVKI 78 Query: 85 --IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDIL 141 +K +++D IQK E+G+ I P+ + D+ A +QC + Sbjct: 79 DAALGILKNDKMDLAIQKLTEIGINKIIPLSVKRGVAKITEKKDKWDLIVREALKQCQAV 138 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGY 200 I LE + ++ ++ E L +P V +IG EGG+ Sbjct: 139 KATEIDEVKKLEEI--EFEKYDLVIVPYECEEEYTLKNLLRNREKLPERVLYIIGSEGGF 196 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 EE E L S ++LG RILR++TA++ ++ Sbjct: 197 APEEIEFLKSKK-ADIVTLGRRILRAETASIVVGGIL 232 >gi|213417363|ref|ZP_03350505.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 182 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ L TQ D +++ VLRM G + LF+G + + ++I K Sbjct: 18 RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + ++S + + + ++++ IQKS+E+G+ I P+ + Sbjct: 78 VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 + + + + I+A EQC +P I PP L+ Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALK 173 >gi|325969870|ref|YP_004246061.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] gi|324025108|gb|ADY11867.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] Length = 263 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 100/261 (38%), Gaps = 32/261 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65 L R F PL + G + YL VLR++ G IL +G+ ++L ++ + +S Sbjct: 6 LPRSFDGEPL-----LELEGKESQYLTRVLRLQIGQQILGLDGQGRKFLLTLTEIKNQSC 60 Query: 66 RFKVEYQSRS------------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113 + Q ++ + K + + + +++ E+G + V Sbjct: 61 TLSCKLVEPGMQVETTDTLPSYQGPYPNLVLLQCLCKGKKEEQIFRQATEIGATTLALVS 120 Query: 114 TRYT---------QNTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNC 163 +RY + DR+ A +Q + P L + WD Sbjct: 121 SRYCVTDLSDKKDKAVRARFDRLEAQIKEALQQSGSPIATNLVPQVLDLRDVPSWWDGQG 180 Query: 164 QIVFADETCGSEN---SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220 +F ++ SE L V +LIGPEGG+ EE L F P+ L Sbjct: 181 LAIFFHQSTRSEEQQTLTSLLKDHPLDKPVCVLIGPEGGFSDEECTFLEKEGF-KPVVLK 239 Query: 221 PRILRSDTAAVAAMALVQAIC 241 ILRS+TA + A+A +Q + Sbjct: 240 TNILRSETAGIYALAAIQVLL 260 >gi|298529346|ref|ZP_07016749.1| protein of unknown function DUF558 [Desulfonatronospira thiodismutans ASO3-1] gi|298510782|gb|EFI34685.1| protein of unknown function DUF558 [Desulfonatronospira thiodismutans ASO3-1] Length = 243 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 9/235 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65 + ++ P + D+ H+L+ VLR+ G+ I + +G+ + ++ + K Sbjct: 1 MHTFYLP-PEKWQEPYCLESDEAHHLSRVLRISAGEKIRVLDGRGRLGIFEVRTSSRKEA 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM- 124 E R Q+ + K++R ++++K+VE+G+ + + +Q N Sbjct: 60 GLFPENIWRVPKPQTRLHLALGWNKSSRRSWLLEKAVELGVWRLVFWTGKNSQGRMDNAS 119 Query: 125 -DRVRTYTISAAEQCDILTLPF-IYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKL 181 ++AA+Q P ++ ++ L++ + +I ++ C ++ L L Sbjct: 120 YQNWHKKIVTAAKQSRNPWFPEPVFLSGNVQELVQYARNIPVRIALWEQEC--QDDLVSL 177 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + P+ + IGPEGG EE + L F P SLGPR+LR +TAA++ + L Sbjct: 178 YQAGPEPDRVVAIGPEGGLTQEELQVLMQAGF-KPASLGPRVLRWETAALSVLCL 231 >gi|121997724|ref|YP_001002511.1| hypothetical protein Hhal_0933 [Halorhodospira halophila SL1] gi|121589129|gb|ABM61709.1| 16S rRNA m(3)U-1498 methyltransferase [Halorhodospira halophila SL1] Length = 240 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 34/240 (14%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMK--------EGDNILLFNGKDGEWLSKI 58 + RL++ PL + + D GD + LFNG+ GE S++ Sbjct: 1 MPRLYIAQPLSAAAVIELTADAA---------AHARALRLRPGDAVTLFNGEGGEHPSEV 51 Query: 59 SYVGKSIRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 V + + + + VQ + + K R+D ++K+ E+G+ I PV+T Sbjct: 52 VAVERRRVTVRVGAHDPTERELPAAVQLLQAVGKGERMDTAVEKATELGVSEIVPVLTER 111 Query: 117 T-------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFA 168 T Q +A EQC T P + P L + + D+ ++ Sbjct: 112 TVVRLNDPQRAAKRRRHWEAVARAACEQCGRNTPPRVAEPVPLAQAWGHSRDYPLRLTLD 171 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +L + ++LIGPEGG E E F+ +GPR+LR++T Sbjct: 172 PLAD------PRLSELTGAQATSLLIGPEGGLSPTELEAAGEHGFLRG-RVGPRVLRTET 224 >gi|72080539|ref|YP_287597.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae 7448] gi|71913663|gb|AAZ53574.1| 26.3 kDa protein in cilium adhesin operon [Mycoplasma hyopneumoniae 7448] Length = 227 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 17/234 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ + + +++ V R++ +N + ++ +L ++ Sbjct: 1 MYRFFVNEKQ--ENFFILTNLTLNHIKTV-RIR-NENFICV-YQNEFYLVRLVPNSNKAE 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQNTH 121 +E + ++ V + +KT ++ IQK+VE+G+ I P ++ + + Sbjct: 56 I-IEKIKGNNEPKNKVVLALAILKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLE 114 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + +A+Q +P I P + LL+ + + + E + + Sbjct: 115 KKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNI 169 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + N I+IGPEGG+ E + L F ++LG RILRS+TAA+ + Sbjct: 170 NIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 222 >gi|71893552|ref|YP_278998.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae J] gi|71851679|gb|AAZ44287.1| putative 26.3 kDa protein in cilium adhesin operon [Mycoplasma hyopneumoniae J] Length = 227 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 17/234 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ + + +++ V R++ +N + ++ +L ++ Sbjct: 1 MYRFFVNEKQ--ENFFILTNITLNHIKTV-RIR-NENFICV-YQNEFYLVRLVPNSNKAE 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQNTH 121 +E + ++ V + +KT ++ IQK+VE+G+ I P ++ + + Sbjct: 56 I-IEKIKGNNEPKNKVVLALAILKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLE 114 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + +A+Q +P I P + LL+ + + + E + + Sbjct: 115 KKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNI 169 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + N I+IGPEGG+ E + L F ++LG RILRS+TAA+ + Sbjct: 170 NIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 222 >gi|290960538|ref|YP_003491720.1| hypothetical protein SCAB_61581 [Streptomyces scabiei 87.22] gi|260650064|emb|CBG73180.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 246 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 13/244 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 VD + G + + V R++ G++++L +G+ + R V Sbjct: 6 FVVDRFDGRGPEIVLDGPEGRHAVSVKRLQPGEDVVLTDGRGRWVEGVVKAAEGKDRLVV 65 Query: 70 EYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNT 120 + + + + K +R + ++ E+G+ AI P + Sbjct: 66 MDVGCLYEEPPAEPRLTVVQALPKGDRGELAVETMTEVGIDAIVPWAAARCITQWRGERG 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + R A +Q P + T + + E+ + + Sbjct: 126 LKALAKWRATAREAGKQSRRTRFPEVADAATSKQVAALLVKADFAAVLHESGDETLATAE 185 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A + +++GPEGG EE LGP +LR+ TA AA AL+ Sbjct: 186 LPAAGE---IVLVVGPEGGVSPEELALFGEAG-AGAYRLGPSVLRTSTAGTAAGALLLGR 241 Query: 241 CGDW 244 G W Sbjct: 242 TGRW 245 >gi|327539023|gb|EGF25657.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula baltica WH47] Length = 280 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 51/280 (18%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 +R +V + ++ + + V+R++ GD I LF+G + +++ V K Sbjct: 3 RRYYVPDLQTQAPVVQLPDEEASHASRVMRVQTGDRIELFDGCGHQADAEVVSVSKRECV 62 Query: 67 FKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123 + + + S V K +R MI++ E+G+ + P++ TQ Sbjct: 63 VRCDPIEDVDREPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQRPPKENF 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----------------NWDHNCQIV 166 +D++R I + +Q L I P + W +V Sbjct: 123 LDKLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQWSWQRVLV 182 Query: 167 FADETCG---------------------SENSLEKLH----AIAHIPNVAILIGPEGGYH 201 ++ ++ +++ + P LIGPEGG Sbjct: 183 AMPDSPPLSATDVEPTGVRQTGAAQTGVGQSDARQINTGQSGLNDRPRTLALIGPEGGLS 242 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E + + + LG RILR +TAA A+V A Sbjct: 243 EAEHQRCVDVG-AESIGLGRRILRIETAA----AIVAARL 277 >gi|78212815|ref|YP_381594.1| hypothetical protein Syncc9605_1285 [Synechococcus sp. CC9605] gi|78197274|gb|ABB35039.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 243 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 5/227 (2%) Query: 8 KRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +RL + L + ++ HYL VLR++ G+ + + +G + + + + Sbjct: 5 RRLLLSPDRLEQGGSVLLNTEEQHYLRRVLRLRCGEQVDVIDGCGRLTRATLME-PQMLG 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMD 125 Q+ + + + + ++ +D +++ + E+G+ I+P+ + + Sbjct: 64 LDSSVQNIEPSPKPQLGLAVALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 R T A EQC+ L +P ++ L + D E+ Sbjct: 123 RWATIIREAVEQCERLWIPQLHEVNGLSEWIGEQDGLRFAGVTRESVAPSLDQCLRQQGN 182 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 + ++IGPEGG+ S E+ V P+ +G ILRS TAAVA Sbjct: 183 ASQTIWVVIGPEGGWTSAEQNLFAEAG-VRPVRMGATILRSSTAAVA 228 >gi|169628757|ref|YP_001702406.1| hypothetical protein MAB_1667 [Mycobacterium abscessus ATCC 19977] gi|169240724|emb|CAM61752.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 258 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 +V Q GD+ H+ A VLRM+ G+ +++ +G ++ V ++ + + Sbjct: 7 FYVPRVPSAGEQVLLDGDEGHHAARVLRMRVGEPVMVCDGAGEVGDGVVASVDRTGLAIE 66 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + V + + K++R D + +VE G + P + Sbjct: 67 VTGRWSVAAVNPKVTVVQALPKSDRSDLAVDLAVEAGADEVIPWQAQRCVSRWDAHKAEK 126 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLE 179 R +A+ Q +P + + L L+ +V Sbjct: 127 GRRRWEAVAQAASRQSRRAHVPSVPELHSTAQLAELVGARAAGGAVVLVLHESAESGLGA 186 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 ++ +V +++GPEGG EE L P+ LGP +LR+ Sbjct: 187 LGARLSSASSVVLIVGPEGGVADEELRILADAGAA-PVRLGPTVLRT 232 >gi|118586988|ref|ZP_01544420.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163] gi|118432610|gb|EAV39344.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163] Length = 253 Score = 170 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 18/238 (7%) Query: 9 RLFVDFPLCIKTQGKASG----DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R F++ + K S D +H+L VLR+K+ D + L +L +++ + Sbjct: 4 RFFLENSQEFLSGNKISKKNNPDVFHHLKDVLRVKDKDLVELV-ADQSAYLVQVNEISAM 62 Query: 65 IRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 F +++ S+ + +K++ LD++IQK+ E+G+ I Y+ Sbjct: 63 EVFFNRLDKLSKDPEIPVKTTIVVPLLKSDHLDWLIQKATELGVFKIILTNFSYSVVKDT 122 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSEN 176 + R AAEQ L +P I DH IV +E+ G ++ Sbjct: 123 KIEKKLQRYEKIVKGAAEQSHRLLVPEIIYEKKFIEQAGLSDHQIGIVAWEESAKSGEKS 182 Query: 177 SLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +L K+ +A + + + GPEGG +E + L S F+ LGPRILR++TA Sbjct: 183 NLFKMIRLAKRDSKFNEIVAVFGPEGGISKKEIKKLESSGFIAA-GLGPRILRAETAP 239 >gi|225848975|ref|YP_002729139.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644488|gb|ACN99538.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 222 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 12/224 (5%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSD 81 + D+YH+ V R+KEGD + + + + +L +I + K+ ++ Q Sbjct: 3 LTDDEYHHAVKVRRLKEGDKVEVNDLQGNIYLGEILKIEKNKALIKPIQKQDIKIPDYKI 62 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYNMDRVRTYTISAAEQ 137 Y P + +++D +I+ ++G+ PV+++ + + + +++ +Q Sbjct: 63 TLYQCMPNQLSKIDDIIEPISQLGVDRFVPVLSKNSAVKQSDVEKKIQKWEKIALNSIKQ 122 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L I P L + N + ++VF ++ E + L N +I+IG E Sbjct: 123 CRRLYPVSIDKPVKLSNI--NSYDDLKVVFYEKEY--ERKTKDLIG-KTFQNCSIVIGNE 177 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG+ +E L F+ PLSLG IL+ +TA + + ++ I Sbjct: 178 GGFKEDEINLLVDKGFL-PLSLGNYILKMETAIIVGICQIKIIL 220 >gi|302560714|ref|ZP_07313056.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus Tu4000] gi|302478332|gb|EFL41425.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus Tu4000] Length = 246 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 14/244 (5%) Query: 11 FVDFPLCIKTQGK--ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIR 66 FV G+ G + + V R++ G+ ++L +G ++ + + Sbjct: 6 FVVDDFATDGSGRHVLDGPEGRHAVAVKRLRAGEAVVLTDGAGRWAEGEVDGTEGKDRLI 65 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 ++ + + + + + K +R + ++ E+G+ I P + Sbjct: 66 VRLGHVVEEPEEFPRLTVVQALPKGDRGEVAVETMTEVGVDVIVPWSASRCITQWKGERG 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++ + R A +Q + P + T + + E+ Sbjct: 126 LKSLAKWRATAREAGKQSRRVRFPRVADAATTKQVASLLAEADFAAVLHESGVEP---LA 182 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + +V +++GPEGG EE LG +LR+ TA AA AL+ Sbjct: 183 TAGLPASGDVVLVVGPEGGVSPEELAAFEGAG-ARVCRLGRSVLRTSTAGTAAGALLLGR 241 Query: 241 CGDW 244 G W Sbjct: 242 TGRW 245 >gi|149198581|ref|ZP_01875625.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155] gi|149138296|gb|EDM26705.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155] Length = 232 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 14/240 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64 +++ F D + K + ++ LRMKEGD +LL NG+ +KI+ + + Sbjct: 1 MRKFFCDELFEVGQLVKIDKTESRHILQTLRMKEGDELLLMNGEGLLADAKIAKIEGRNN 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + ++ + + + + +P L +++++VE+G+ ++ + +Y+ + Sbjct: 61 LFCELLQVTHAPRPKLKISLFVAPPSNGTLALILKQAVELGVHSVYLMACQYSVSKSKKE 120 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI--VFADETCGSENSLEKLH 182 V+ ISAA+Q LP + T + L N V +D+ ENS Sbjct: 121 KNVQAELISAAKQSGNPYLPKVLSGLTFKEALALAPANNFYGAVPSDDFSAPENS----- 175 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 I + IGPEGG+ E + + LP PL++GP ILR +TA + +++ + G Sbjct: 176 ----IGEAGVWIGPEGGFSDSELQEIQKLPAC-PLAIGPYILRVETAVNSVCSVLMSKYG 230 >gi|258405682|ref|YP_003198424.1| 16S ribosomal RNA methyltransferase RsmE [Desulfohalobium retbaense DSM 5692] gi|257797909|gb|ACV68846.1| protein of unknown function DUF558 [Desulfohalobium retbaense DSM 5692] Length = 244 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 6/231 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68 ++ G ++ +L LR+ GD + L NG+ +I + GK R Sbjct: 7 FYLPPSEWDPAGMTLQGQEFTHLRKALRLGPGDAVQLTNGRGDVADGRIEAIQGKKARIT 66 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-- 126 VE + + S + K+ R + ++K+ E+ + ++Q + + Sbjct: 67 VESITSVDRRDSQIVVAVGWAKSLRRGWFLEKAAELEARGVYLWQAEHSQGRIPDATKAN 126 Query: 127 VRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 + ++ A+Q LP + P L LL+ F E +E +A Sbjct: 127 WQGQLVAGAKQSGNPWLPELEVFPGGLAELLEATADIDHRFFLWENATAEEGFHP-PPLA 185 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 ++GPEGG+ E E L + V P+SLG R+LR +TAA+ + L Sbjct: 186 DGERALAILGPEGGFADSEVELLRAHN-VRPVSLGRRVLRWETAALLCLGL 235 >gi|311895971|dbj|BAJ28379.1| putative ribosomal RNA small subunit methyltransferase E [Kitasatospora setae KM-6054] Length = 247 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 12/236 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSR 74 T + G + + A V R++ G+ + L +G+ +S + ++ V Sbjct: 15 APGTTVRLDGAEGRHAAAVKRLQPGEALTLADGRGRGADGTVSALHGKDALDVLVAAVRE 74 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 + + + K +R + ++ E G+ AI P + + + R Sbjct: 75 EPAPAPRITVVQALPKGDRGELAVETMTEAGVDAIVPWAASRCITQWKGERGAKALAKWR 134 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A +Q L P + T LL E + L A Sbjct: 135 ATAREAGKQARRLRFPEVGDALTTRQLLPLLAAADFAAVLHEEGALPLAGADLPAAGE-- 192 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG +E + P LGP +LR+ TA VAA AL+ G W Sbjct: 193 -IVLVVGPEGGVSPDEIAA-FAEAGAAPYRLGPSVLRTSTAGVAAGALLLGRTGRW 246 >gi|313678552|ref|YP_004056292.1| hypothetical protein MBOVPG45_0458 [Mycoplasma bovis PG45] gi|312950389|gb|ADR24984.1| conserved hypothetical protein TIGR00046 [Mycoplasma bovis PG45] Length = 227 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 21/235 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD + ++ R+ ++ L N + + I Sbjct: 1 MHRFFVDQK--ENDYFILNEKIIKHIKSS-RL-FNEHF-LCNYLGRFYECFLESNKAKI- 54 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120 V+ S S +++ IK R +++IQK+ E+G+ I P+ ++Y T Sbjct: 55 --VKELSISHEYTNEIILAAPIIKIKRFEWLIQKATELGVSRIIPMNSKYVDQTIVKHEF 112 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +DR +AAEQ T+P + T E ++ N + + +I A E ++ ++K Sbjct: 113 SKKIDRFNEIIKNAAEQSFRNTVPELESIKTFEEIILN-NQDKKIYVAYENKELDSQIDK 171 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + +++GPEGG E + +SLG ILR++TA + ++ Sbjct: 172 IDTNS-----ILIVGPEGGLSDSEVDFALKNN-CFIVSLGKTILRAETACIYMLS 220 >gi|307266432|ref|ZP_07547968.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918540|gb|EFN48778.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii Rt8.B1] Length = 194 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 9/195 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++++F+D G+ +H+L +VLR+K G+ I+ +G E+ ++I + K + Sbjct: 1 MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59 Query: 66 RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118 +E + S T+ + ++ K+++++ +IQK E+G+ PV+TRYT Sbjct: 60 ILFLERELESNTESALEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N + + R R + A +Q +P I P + E + D + E + Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFNLCIIPYEKEQTSKLK 179 Query: 179 EKLHAIAHIPNVAIL 193 E L + + L Sbjct: 180 EVLKKAKGVKKLEFL 194 >gi|311113633|ref|YP_003984855.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931] gi|310945127|gb|ADP41421.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931] Length = 267 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 15/241 (6%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + +G + H+ A V R+ G+N+ L +G+ +S + Sbjct: 29 TAGSTFTLTGPEAHH-AKVKRLAIGENLDLADGQGHRIHGIVSAISSKGLEVTVQNLDKD 87 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 V + + K NR I+ E+G+ ++ P + + + + Sbjct: 88 DNSLSVSLVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNT 147 Query: 131 TISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 +AA+Q +P + + + L ++ V+ +E E L I + Sbjct: 148 VSAAAKQSRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYS 207 Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P+ + IL+GPEGG E E L LG ILR+ TA AA+ + + G Sbjct: 208 PDNPTRIYILVGPEGGITEREIELFTRAGAHKAL-LGTEILRASTAGAAALCTINVVLGR 266 Query: 244 W 244 W Sbjct: 267 W 267 >gi|167912563|ref|ZP_02499654.1| hypothetical protein Bpse112_18894 [Burkholderia pseudomallei 112] Length = 200 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 14/189 (7%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 8 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171 + + R ++ EQC LP I P + L D +++ + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186 Query: 172 CGSENSLEK 180 SL Sbjct: 187 SVPFASLPA 195 >gi|240169914|ref|ZP_04748573.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 +VD T GD+ + A V R++ G+ ++L +G+ ++ G+ + + Sbjct: 6 FYVDALPDPGTLAVVDGDEGFHAATVRRIRPGEEVVLGDGEGDLARCRVERAGRDGLAAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + + + V + + K+ R + I+ + E G A R V + Sbjct: 66 VLERWSTVPARPAVTVVQALPKSERSELAIELATEAGADAFVAWQAARCVASWNGSRVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179 + R R+ SAA Q +P + P + L +++ +V A + E Sbjct: 126 GLRRWRSVARSAARQSRRAYIPPVDGPLSTAALTVRVRDEVARGAMVLALHESATARLAE 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+A ++ ++IGPEGG EE + L V + LGP +LR+ T Sbjct: 186 V--ALAQANSLMLVIGPEGGIAPEEIDALTGAGAV-AVRLGPTVLRTST 231 >gi|159903322|ref|YP_001550666.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9211] gi|159888498|gb|ABX08712.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9211] Length = 251 Score = 168 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 16/250 (6%) Query: 4 HSHLKRLFVDFPLCIKTQ-----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + L+RL + ++ HYL VLR+K GD I + NG W + Sbjct: 1 MAELRRLLIGQDRIENIDKNDRLLLLKPNETHYLTRVLRLKPGDEIFIVNGYGSLWRGCL 60 Query: 59 SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYT 117 ++++ + + + D +++ E+G+ +P+I+ + Sbjct: 61 EKSDSLTLLSSLTNPEIFHQRANPLICLAVVLPKKGFDEILRFCTEVGVDIFQPLISERS 120 Query: 118 QNTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV---FADET 171 N + R ++ A EQ + L +P + PP + + + + Sbjct: 121 INQDIGILRLKRWQSIINEAVEQSERLWMPELRPPIRFQDWVTESSIGAVSIGTTRENRY 180 Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 C E L +L + +V I IGPEGG+ S E + G ILR TAA+ Sbjct: 181 CELETWLAQLS--NDLSHVWIAIGPEGGWSSTELSLALKHG-AQYVQFGETILRVSTAAI 237 Query: 232 AAMALVQAIC 241 A + A Sbjct: 238 -CSAQLMASW 246 >gi|303246600|ref|ZP_07332878.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans JJ] gi|302491940|gb|EFL51818.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans JJ] Length = 241 Score = 168 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 10/233 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 ++ P +G + + A VLR K G+ I F+G E L +I+ V + R ++ Sbjct: 7 FYIP-PGAFGEPYALTGGEAAHCAKVLRKKAGEIIRAFDGLGREGLFRITAVSRD-RVEL 64 Query: 70 EYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMD 125 E +S ++ + + ++ R D+ ++K+VE+G I +Q + Sbjct: 65 EARSLAEAPLPATRLYLAAGFSRSTRRDFFLEKAVELGAAGIFFWQAARSQGRMPEAPKE 124 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEF--LLKNWDHNCQIVFADETCGSENSLEKLHA 183 + ++AA+QC LP + + + H + E G + + +L Sbjct: 125 SWQATLVAAAKQCGAANLPELDTVSGGAAGLVAACSHHFDRRYLLWEAPGLDRRI-RLDD 183 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++GPEGG E + PLSLG R+LR +TA +A +AL Sbjct: 184 VGAPGEALFVLGPEGGLTDAEAAIFQDAGYA-PLSLGERVLRFETAGLAVLAL 235 >gi|291320322|ref|YP_003515584.1| hypothetical protein MAGa4150 [Mycoplasma agalactiae] gi|290752655|emb|CBH40628.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 227 Score = 168 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 21/235 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD ++ R+ ++ L N + + + I Sbjct: 1 MHRFFVDTK--ENDYFILDEKIIKHIKSA-RL-ANEHF-LCNYLNKFYECYLEGNKAKI- 54 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120 ++ S + ++V IK R ++++QK+ E+G+ I P+ +++ T Sbjct: 55 --IQELSINHEYLNEVVLAAPVIKIKRFEWLLQKATELGVSRIIPMSSKFVDQTIIKYEF 112 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + +DR +AAEQ +P + TT E ++ + + + +I A E E+ ++K Sbjct: 113 NKKIDRFNEIIKNAAEQSFRNVVPKLEKITTFEEIILS-NQDKKIYVAYENKEVESQIDK 171 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + +++GPEGG E + +SLG ILR++TA + ++ Sbjct: 172 IETNS-----ILIVGPEGGLSKAEIDFALQNN-CFIVSLGKTILRAETACMYMLS 220 >gi|167464493|ref|ZP_02329582.1| hypothetical protein Plarl_18376 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 163 Score = 168 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 8/161 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+ T + GD H+L V+R + G+ I++ +G E L++I+ V K++ Sbjct: 1 MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60 Query: 67 FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + R T + +Q + K ++++ +IQK E+G P ++ T + Sbjct: 61 TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 R + AAEQ +P + + + +L+ Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVVEGVHSWKQILEQA 161 >gi|163840667|ref|YP_001625072.1| 16S ribosomal RNA methyltransferase RsmE [Renibacterium salmoninarum ATCC 33209] gi|162954143|gb|ABY23658.1| coserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 256 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 17/249 (6%) Query: 10 LFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 F D L + +GD+ H+ A V R+ +++ + +G + + Sbjct: 6 FFADAASIADLEPGDDFELAGDEGHHAATVKRIAVDEHLDIVDGVGLRLNCIVLQTAPGT 65 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118 + +V+ + Q + + + K R + I+ + E+G+ A+ P + + Sbjct: 66 LTVRVQSRLAEPAPQPRLVLVQALAKDGRDELAIETATELGVDAVIPWQADRSIVRWRPE 125 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSE 175 +M + +A +Q P + P L+K + +V +E + Sbjct: 126 RVEKSMAKWAKTIQAATKQARRARTPLLLDPVDSPGLVKRIALLPKSRMLVLHEEA--TT 183 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + L+ + + + +++GPEGG E E S L LGP +LRS TA AA+ Sbjct: 184 DLLQLVDQYKDVEELLLVVGPEGGMSDRELELFSSAG-SEKLRLGPHVLRSSTAGPAAVV 242 Query: 236 LVQAICGDW 244 L+ G W Sbjct: 243 LLSEALGRW 251 >gi|317484787|ref|ZP_07943685.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] gi|316923969|gb|EFV45157.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6] Length = 260 Score = 168 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 14/237 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS---YVGKSIR 66 F++ L + + H+L VLR++EG+++ + +G+ E ++ K++ Sbjct: 18 FFLEPDLW-HEPYELDASESHHLTRVLRIREGEDVRVLDGRGREGRFRVLPYKKNAKAVA 76 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTHYN 123 ++ + +S V K R ++++K+VE I +Q + Sbjct: 77 LRLLDEWTYPEPESKVILAAGWTKAARRGWILEKAVEFEASGIWLWQAERSQFPVPSDIK 136 Query: 124 MDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDH---NCQIVFADETCGSENSLE 179 + + + A+QC LP + P ++ L+ + + V + S SL Sbjct: 137 -ESWQGQLAAGAKQCRNPWLPELRTMPGGVDELIALAEELGCEHRHVLVESGHKSVMSLT 195 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + ++GPEGG+ ++E E L F+ P +LG R+LR +TAAV + L Sbjct: 196 P-DTLGQPGRTLCVVGPEGGFTAQEVEKLTRAGFL-PATLGERVLRWETAAVLCLGL 250 >gi|300741540|ref|ZP_07071561.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567] gi|300380725|gb|EFJ77287.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567] Length = 255 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 15/241 (6%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + +G + H+ A V R+ G+N+ L +G+ +S + Sbjct: 17 TAGSTFTLTGPEAHH-AKVKRLAIGENLDLADGQGHRIHGIVSAISSKGLEVTVQNLDKD 75 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 V + + K NR I+ E+G+ ++ P + + + + Sbjct: 76 DNSLSVSLVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNT 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 +AA+Q +P + + + L ++ V+ +E E L I + Sbjct: 136 VSAAAKQSRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYS 195 Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P+ + IL+GPEGG E E L LG ILR+ TA AA+ + + G Sbjct: 196 PDNPTRIYILVGPEGGITEREIELFTRAGAHKAL-LGTEILRASTAGAAALCTINVVLGR 254 Query: 244 W 244 W Sbjct: 255 W 255 >gi|95929633|ref|ZP_01312375.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] gi|95134330|gb|EAT15987.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] Length = 254 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 11/215 (5%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDY 96 + G+ + + + + ++I+ + + V Q + + + + R + Sbjct: 42 ARVGEIVTVEDPFQQCYRARITGLDEGDATVVPFEQIDAVESSLKICVCQALPEKERFEL 101 Query: 97 MIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 ++QK E+G+ I P ++R++ R + A QC LP + Sbjct: 102 VLQKMTEIGVTRIVPFVSRHSTTVEQRDAGQKKSHRWPDVLLRAGRQCRRAQLPELMEVV 161 Query: 151 TLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 E +L D + +++ +++ S + A +A+++GPEGG+ EE Sbjct: 162 DFETMLDALADWDVKLLLSEKNTAW--SFREGIGTAKPDRIAVIVGPEGGFADEEITLAQ 219 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 S V P+S+G RILR++TAA+ A L Q GD+ Sbjct: 220 SRG-VVPVSVGRRILRTETAAIVAATLAQFCVGDY 253 >gi|118466945|ref|YP_881243.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium 104] gi|118168232|gb|ABK69129.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 253 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 + D + GD+ + A V R++ G+ ++L +G G ++ + G+ +R + Sbjct: 6 FYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + V + + K+ R + ++ + E G R V + Sbjct: 66 VLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179 + R R +AA Q +P + + L +++ +V A ++ + Sbjct: 126 GLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESATDRLTD 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +A ++ ++IGPEGG +E L ++ + LGP++LR+ T Sbjct: 186 V--PVAQAKSLFLVIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231 >gi|303326762|ref|ZP_07357204.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3] gi|302862750|gb|EFL85682.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3] Length = 250 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 8/232 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 F P + G + +L VLR+ GD + L +G+ + V K R + Sbjct: 5 FFYLPPEAWGREVSLEGQEAKHLGQVLRLVPGDEVSLLDGQGRTGRFAVRAVSKKSARLE 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-- 126 +S + S + K R + ++K+VE+G A+ ++Q R Sbjct: 65 CLRESFTPRPASLAVMALAFSKAVRRGFFMEKAVELGAHAVWLWQGDHSQGKLPAGARDS 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 + I+ A+Q LP + T ++ L++ Q + E EN +A Sbjct: 125 CQGQMIAGAKQSGNPWLPEVRALTGGVDELVELSRVADQRILPWEMQ--ENVPMLTPDLA 182 Query: 186 HIPNVAI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 V + +IGPEGG+ + E + L + F +SLG RILR +TAA + + Sbjct: 183 GRTGVTVYIIGPEGGFSARELDALRAAGFA-AISLGARILRCETAATLCLGI 233 >gi|195998640|ref|XP_002109188.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens] gi|190587312|gb|EDV27354.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens] Length = 246 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 9/241 (3%) Query: 7 LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGK 63 + R +++ L + GDQ H++ +V+R++ G+ + + NG++ ++I +Y G Sbjct: 1 MPCYRFYLNSNLVKNGRVALQGDQLHHMKNVMRLRVGETVEIINGRNQLAQARIDAYQGN 60 Query: 64 SIRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 I Q +Q + + I I++ LD +I+K E+G+ + + + Sbjct: 61 QIAHVNIDQVLTQLVLDKPRINLIQPLIRSKGLDLVIEKCTELGVSHFYLYASELGEISQ 120 Query: 122 YNMDRVRT---YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++ R + ISA +QC L LP + L LK + I F D + Sbjct: 121 FSSARCKKLTEIAISAIKQCGRLDLPTLTFADRLHN-LKLQSNVHPICFGDTRHLDNAQV 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + IGPE G+ +E L + T + + P ILRS+TA++ AL Sbjct: 180 GFTPQSTLAQCKTVCIGPEKGFSDKEINYLENQLGATGIKISPFILRSETASITLTALTS 239 Query: 239 A 239 Sbjct: 240 Y 240 >gi|148377635|ref|YP_001256511.1| hypothetical protein MAG_3690 [Mycoplasma agalactiae PG2] gi|148291681|emb|CAL59067.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 227 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 21/235 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FVD ++ R+ ++ L N + + + I Sbjct: 1 MHRFFVDTK--ENDYFILDEKIIKHIKSA-RL-ANEHF-LCNYLNKFYECYLEDNKAKI- 54 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120 ++ S + ++V IK R ++++QK+ E+G+ I P+ +++ T Sbjct: 55 --IQELSINHEYLNEVVLAAPVIKIKRFEWLLQKATELGVSRIIPMNSKFVDQTIIKYEF 112 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + +DR +AAEQ +P + T E ++ + + + +I A E E+ ++K Sbjct: 113 NKKIDRFNEIIKNAAEQSFRNAVPKLEKIATFEEIILS-NRDKKIYVAYENKEVESQIDK 171 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + + +++GPEGG E + +SLG ILR++TA + ++ Sbjct: 172 IETNS-----ILIVGPEGGLSKGEIDFALQNN-CFIVSLGKTILRAETACIYMLS 220 >gi|33863058|ref|NP_894618.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9313] gi|33634975|emb|CAE20961.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str. MIT 9313] Length = 258 Score = 166 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 13/248 (5%) Query: 4 HSHLKRLFV-----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + L+RL V D D+ HYL VLR++ G + L +G W + + Sbjct: 1 MAELRRLLVESQRFDAITASDHLLSLKQDEVHYLRRVLRLRNGQAVALVDGVGHFWEAHL 60 Query: 59 SYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRY 116 G ++ S S Q + Q + + R + +++ S E+G+ I+P+ + Sbjct: 61 -QAGDFLKLDTSPSSPSLQQPRHRQQLGLAVVLPKRGFEEVLRMSCELGVNLIQPLRSDR 119 Query: 117 T-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 R R A EQ + L P + P L K+ + A Sbjct: 120 CTPQAEERPLRWRVILREAVEQSEQLWQPELLPIAEASALWKSPPDHAVFALATTRRQGL 179 Query: 176 NSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L+ L I V + IGPEGG+ E+ + +V P++LG ILR+ TAAVAA Sbjct: 180 IDLQLLMEGLTPEINQVTVAIGPEGGWSPLEECAAEAAGWV-PVALGDSILRTCTAAVAA 238 Query: 234 M-ALVQAI 240 +V + Sbjct: 239 AQTMVSSR 246 >gi|239979382|ref|ZP_04701906.1| 16S rRNA m3U1498 methyltransferase [Streptomyces albus J1074] gi|291451257|ref|ZP_06590647.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074] gi|291354206|gb|EFE81108.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074] Length = 243 Score = 166 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 14/243 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKS-IRF 67 VD G + + V R+ G+ ++L +G G + + +S GKS + Sbjct: 6 FLVDE--VSAGTVVLDGPEGRHAVSVRRLNPGEPVVLTDGAGRGAFGTVVSAEGKSTLYV 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 V+ + + + + K +R + ++ E G+ AI P + Sbjct: 64 AVDEVREEPAPRPRITVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGERGL 123 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++ + R A +Q L P + P + + E GS Sbjct: 124 KSLGKWRATAREAGKQSRRLRFPEVADPHSTRQVAALLGGADFAAVLHEE-GSAPLARA- 181 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 A+ ++ +++GPEGG SEE LGP +LR+ TA A +AL+ Sbjct: 182 -ALPEEGSIVLVVGPEGGVSSEELAA-FGEAGAGAFRLGPSVLRTSTAGTAGVALLLGRT 239 Query: 242 GDW 244 G W Sbjct: 240 GRW 242 >gi|225375403|ref|ZP_03752624.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM 16841] gi|225212739|gb|EEG95093.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM 16841] Length = 162 Score = 166 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 9/155 (5%) Query: 94 LDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 ++++IQK+VE+G+ + PV + + + R + SAA+Q +P + Sbjct: 1 MEWIIQKTVELGVYEVIPVAMKNCVVKLDDKKAKSKVTRWQAIAESAAKQSKRSLIPEVK 60 Query: 148 PPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 P + + + + ++V + G + + I ++A+ IGPEGG+ EE E Sbjct: 61 MPMSYKEAVAYAKKLDVKLVPYENEHGMAGTKAAMEQIKKGESIAVFIGPEGGFAPEEIE 120 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +SLG RILR++TA + A+A++ Sbjct: 121 MVRDE--MQLISLGRRILRTETAGIVALAILGYQL 153 >gi|120404793|ref|YP_954622.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium vanbaalenii PYR-1] gi|119957611|gb|ABM14616.1| protein of unknown function DUF558 [Mycobacterium vanbaalenii PYR-1] Length = 246 Score = 166 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 16/230 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD G++ H+ A V R + G+ + L +G + V K + + Sbjct: 5 FYVDVVPAPGDLAVVDGEEGHHAATVCRTRPGEELDLADGAGTVAHCVVEDVAKGRLTAR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121 V+ + + V + + K+ R + ++ + E G A Sbjct: 65 VQDRHLVAPPRPTVTVVQALPKSERSELAVELATEAGADAFIAWQASRCVARWDGAAKVD 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSL 178 + R R SAA Q +P + + L+++ + +V + Sbjct: 125 KGLRRWRAVARSAARQSRRPYIPDVDGVVSTRDLVESTRCAEPGTVLVLHESATRPLADA 184 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A + +++GPEGG +E L V + LGP +LR+ T Sbjct: 185 ----AAGQNDPLTLIVGPEGGVADDELAALTDAGAV-AVRLGPTVLRTST 229 >gi|304373087|ref|YP_003856296.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma hyorhinis HUB-1] gi|304309278|gb|ADM21758.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma hyorhinis HUB-1] gi|330723289|gb|AEC45659.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyorhinis MCLD] Length = 225 Score = 166 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 20/236 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV I +L V+ D + ++ +L+K + K+ Sbjct: 1 MHRFFVFEK--INNYFILDKRVLQHL-KVI-KSRNDKFICV-YQEKFYLTKFVFPNKAEI 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----H 121 +E + + + + +KT ++++QK+VE+G+ I P ++ + Sbjct: 56 --IEELNLNHEFKKQPMLAIAILKTKAFEFILQKAVELGVAKIIPFYSKNVEQKLGNDID 113 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R + + AA+Q +P + P +L + I A E ENS Sbjct: 114 KKVQRWQEMVLHAAQQSFRNIIPKVEKPIKFHEVLNIEKNFKFI--AHEKENEENSQLLF 171 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + LIGPEGG+ +E + F +SLG RILRS+TAA+ +A + Sbjct: 172 DSDS-----LFLIGPEGGFTEDEIAKAKAKNF-KVISLGKRILRSETAAMFCLARL 221 >gi|227833632|ref|YP_002835339.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC 700975] gi|262184635|ref|ZP_06044056.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium aurimucosum ATCC 700975] gi|227454648|gb|ACP33401.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC 700975] Length = 246 Score = 166 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 15/245 (6%) Query: 11 FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSI 65 F+ L + G + + V RM G++++L +G + I+ ++ Sbjct: 6 FLHPDLSLAEVGQPVGLDGAEGRHAVTVKRMGPGEHLVLIDGSGRRATATITDTQGKDTL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V+ V + + K+ R + + + + G I + Sbjct: 66 AALVDDLVILPEPSPRVVVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVSKWDAKK 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + + ++AA+Q +P + P T L + +V +E E L+ Sbjct: 126 APKALSKWESAAVAAAKQSRRARVPAVRGPLTTRQLCQEISGARALVLHEEA---EVRLK 182 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L + + +L+GPEGG +EE L + LGP +LR+ +A++ A+A + Sbjct: 183 DLTDLDAAETIYLLVGPEGGIGAEELARLQDAGAA-AIKLGPEVLRTASASMVALASIGT 241 Query: 240 ICGDW 244 + W Sbjct: 242 LTARW 246 >gi|239617245|ref|YP_002940567.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1] gi|239506076|gb|ACR79563.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1] Length = 231 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 14/237 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-K 68 FV+ + + + H++ V+R+K GD ++ +GK + + + K+ + Sbjct: 5 FFVER--VEEKRLIFDEIEAHHM-KVVRVKPGDELVATDGKGTLYEFVLQELSKNYSVGR 61 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNMDR 126 + + V + +K RL +++KS E+G I T +++ Sbjct: 62 MLSKKVFHHDDRTVIVSVASMKWLRLRLILEKSTELGADRIEIFNCERTVARVDQRKVEK 121 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 R AA+Q LP + + L ++ + +F D S ++L+ I Sbjct: 122 FRRIVKEAAKQSVNPFLPEV----VIHEKLPRFNSDDLNIFLDFKKESISTLQ--EKIRG 175 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 V I++GPEGG+ EE + +SLG RILR++TA +A+++ V G Sbjct: 176 SNVVRIIVGPEGGFTKEEIREMQQDS--ISVSLGSRILRTETAVIASLSFVNFSIGR 230 >gi|33865690|ref|NP_897249.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH 8102] gi|33632860|emb|CAE07671.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 242 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 7/215 (3%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + HYL VLR + GD I + +G W +++ ++R V + Sbjct: 21 DPTVPLERSEQHYLRRVLRCRVGDTIDVVDGCGSLWQAQLISAD-ALRVSVPADQIEPVR 79 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQ 137 + S I+ + ++ + E+G+ I+P+ + + +R T A EQ Sbjct: 80 VPRLGLGLSLIRRG-FEDALRMACELGVDEIQPLRADRSTPQAEHRPERWATILQEAVEQ 138 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGP 196 C+ L LP + P L + D V + + L+ + V +L+GP Sbjct: 139 CERLWLPTLKPACKLAQWPNSSDPVAVGVT--RRADTPALRDWLNQTTNCNGMVWLLVGP 196 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 EGG+ + E++ + + P+ LG ILRS TAAV Sbjct: 197 EGGWSNAEEQLSITREW-QPVHLGSSILRSSTAAV 230 >gi|15829013|ref|NP_326373.1| hypothetical protein MYPU_5420 [Mycoplasma pulmonis UAB CTIP] gi|14089957|emb|CAC13715.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 223 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 21/237 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ + + +++ V R++ + I ++ + +L K+ GK Sbjct: 1 MFRFFVEQK--EDNYFILTNEILNHI-KVARVQNKNFICIY--EQVFYLCKLE--GKKA- 52 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----H 121 +E + ++ V S I T R + IQK+ E+G+ P++++ + Sbjct: 53 LIIEKIDANHEFKNQVILAMSVINTKRFELTIQKAAELGVSLFIPMLSQNVEQKLGNDID 112 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R +T ++A EQ + I P + +++ N I E + + L Sbjct: 113 KKLQRWKTIALNACEQSFRNKVMEITYPKSFNEVIEMEVKNKYIAH-------EKAKDFL 165 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + N LIGPEGG+ +E + F + LG RILR++TAA ++ + Sbjct: 166 TKSSFETNSLFLIGPEGGFSQKEIDLAQEKSF-ELIWLGKRILRAETAAFFVLSRIN 221 >gi|145223290|ref|YP_001133968.1| hypothetical protein Mflv_2703 [Mycobacterium gilvum PYR-GCK] gi|315443750|ref|YP_004076629.1| hypothetical protein Mspyr1_21400 [Mycobacterium sp. Spyr1] gi|145215776|gb|ABP45180.1| protein of unknown function DUF558 [Mycobacterium gilvum PYR-GCK] gi|315262053|gb|ADT98794.1| conserved hypothetical protein TIGR00046 [Mycobacterium sp. Spyr1] Length = 251 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 17/230 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD GD+ H+ A V R + G+++ L +G + V K + + Sbjct: 5 FYVDSLPGPGELAVVDGDEGHHAATVCRTRVGEHLDLSDGAGAVAHCVVEDVAKGRLSAR 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121 V+ + V + + K++R + I+ + E G A Sbjct: 65 VQDRILVPVPTPAVTVVQALPKSDRSELAIELATEAGADAFLGWQAARCVARWDGAAKVD 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSL 178 + R R SAA Q +P + P + + L+ ++ +V + + Sbjct: 125 KGLRRWRAVARSAARQSRRPHIPEVRGPVSTQDLVGFTRDAGPATVLVLHESA-----TR 179 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A ++ +++GPEGG EE L + LGP +LR+ T Sbjct: 180 PLTDADLTARSLTLVVGPEGGVADEELAALTDAG-AMAVRLGPTVLRTST 228 >gi|51244548|ref|YP_064432.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54] gi|50875585|emb|CAG35425.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54] Length = 158 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 12/158 (7%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIY 147 +D +IQK E+G P +Q +R + ++ A +QC + Sbjct: 1 MDLVIQKCTELGAEVFIPYDAARSQGKLDASQARKKQERWQRISLEACKQCMRPQPMTVA 60 Query: 148 PPTTLEFLLKNWD---HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 P + L+ +++F +E + +L L +A V I++GPEGG EE Sbjct: 61 SPASFVDLVTAESVEGPRLKLIFWEEESAT--NLYNLPGLADASGVDIILGPEGGISREE 118 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 E + + T +SLG RILR++TAA+ A+ LVQ + G Sbjct: 119 IEIARAHGWQT-VSLGQRILRAETAAIVALTLVQYLTG 155 >gi|212702535|ref|ZP_03310663.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098] gi|212673976|gb|EEB34459.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098] Length = 245 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 7/234 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65 L R ++ G + +L VLR+ G+ +LL +G+ I+ K Sbjct: 3 LHRFYLPPEQWAHD-LWLEGQEAKHLVQVLRLAPGEEVLLLDGQGRSGRFAIAETAKKKA 61 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYN 123 R ++ + + +S + K R + ++K+VE+G AI ++Q Sbjct: 62 RLILQEEQMAPAPESRAVMALAFSKAVRRGFFMEKAVELGAHAIWLWQGDHSQGKLPADA 121 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R I+ A+QC LP + T ++ L++ + E + N L Sbjct: 122 AESCRGQLIAGAKQCGNPWLPQVEALTGGVDELVRRAATVDCRILPWEMQDTVNMLTPRL 181 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 A V +IGPEGG+ E ++L + F T +SLG R+LR +TAA + L Sbjct: 182 AGRPGTTV-YVIGPEGGFSQRELDSLRAAQF-TFVSLGARVLRCETAATLCLGL 233 >gi|46580095|ref|YP_010903.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris str. Hildenborough] gi|46449511|gb|AAS96162.1| conserved hypothetical protein TIGR00046 [Desulfovibrio vulgaris str. Hildenborough] gi|311233906|gb|ADP86760.1| protein of unknown function DUF558 [Desulfovibrio vulgaris RCH1] Length = 249 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 ++ F+ +G + +L V+R+ GD I L +G E + +++ + S+ Sbjct: 1 MRTFFLPSEQWSP-PYALTGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNSV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123 E + S K R ++++K+VE+ AI ++Q+ + Sbjct: 60 ELTPESITTHPEPVSRAVLAVGWGKAVRRSWLMEKAVELEASAIWLWQAEHSQSPVPDDI 119 Query: 124 MDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + ++ A+Q LP + P +E LL+ + E E LE Sbjct: 120 KESWLAQMVAGAKQSANPWLPALQTLPGGIEELLRASSDFERRFMLWEGETPEALLEA-K 178 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + + ++GPEGG+ + E + L + P+SLG R+LR +TAA+ + L G Sbjct: 179 DVGGVGTTLYVVGPEGGFSAREVKALRE-GGMMPVSLGQRVLRWETAALLCLGL--HWWG 235 Query: 243 D 243 Sbjct: 236 R 236 >gi|315604659|ref|ZP_07879722.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313671|gb|EFU61725.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 262 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 18/247 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEY 71 L + + G + + A V R+ G+ + + +G+ I ++ V Sbjct: 15 PASLGVGERATLGGSEGRHAASVRRIGAGERVDIVDGRGLRLTCDVIGSDKDTLSLTVRE 74 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMD 125 R +V + + K R + ++ E+G+ + P ++ Sbjct: 75 SRREDAPVPEVVLVQALAKGGRDEAAVEICTEIGVDRVIPWASQRAIVQWKGPKAEKGRA 134 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + +AA+Q +P + L + + + F SE+ L Sbjct: 135 KWQAVARAAAKQSRRAFVPPVEDAVDSARLSAWIASLTAEGGVAFVCHEEASESLGAALA 194 Query: 183 AI-------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 I + +A+++GPEGG +EE L +T + LG +LRS TA A+ Sbjct: 195 RIRLGSAAGSLPARIALVVGPEGGIGAEESAQLVGAGALT-VGLGAHVLRSSTAGAVALT 253 Query: 236 LVQAICG 242 L++A G Sbjct: 254 LIRAAAG 260 >gi|123968258|ref|YP_001009116.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. AS9601] gi|123198368|gb|ABM70009.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. AS9601] Length = 257 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 20/248 (8%) Query: 7 LKRLFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L RL + + S ++ HYL V+R+K G I + NG+ W + K Sbjct: 4 LTRLIISHERIENIKNNNLELSKEEAHYLNKVMRIKNGKKIFIANGEGSLWKATKV---K 60 Query: 64 SIRFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + ++ + Q ++ + I I + + +++ E+G+ I+P+ + N Sbjct: 61 NDCLEIIKSKKPYLIQEQEIHLLGIAVVIPKSGFEDILKMCTEIGIDYIQPLFSERQVNK 120 Query: 121 H----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCG 173 + + R A EQ + L P I + LK+ D+ ++ + +ET Sbjct: 121 NLNFSRKLLRWNLIINEAVEQSERLWKPSILNGMDIIEWLKSRDNQERLSISITREETLY 180 Query: 174 SENSLEKLHAIAHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 N + I IGPEGG+ +E + +T + L ILR+ TA+ Sbjct: 181 DLNQWLRKQQEFGNKKGGIFWNVIGPEGGWSDKEIDFFKKNN-ITFVKLSDTILRTSTAS 239 Query: 231 VAAMALVQ 238 + A +++ Sbjct: 240 INASSILN 247 >gi|262203051|ref|YP_003274259.1| hypothetical protein Gbro_3161 [Gordonia bronchialis DSM 43247] gi|262086398|gb|ACY22366.1| protein of unknown function DUF558 [Gordonia bronchialis DSM 43247] Length = 249 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 20/245 (8%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKV 69 V P T SG + + V R+ G+ I++ +G + ++ V + +V Sbjct: 11 VPEP---GTDAVLSGPEGRHAVTVTRVAVGERIVIGDGAGSTAVCEVQAVESKDTLIARV 67 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNM 124 + V + + K+ R + + + E G I P + R+ + Sbjct: 68 REFAYVAPPDPQVTVVQALPKSERSELAVDLATEAGADVIVPWQAARCVARWAGKADKGV 127 Query: 125 DRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKN--WDHNCQIVFADETCGSENSLE 179 + R SAA+Q +P I T + L + + +E G L Sbjct: 128 AKWRAAASSAAKQSRRAWIPEITDLATTTDVRALCADTIATGGLVAILHEEATGGLRELP 187 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +A + ++IGPEGG E + L +L P+ LGP ILR+ TAA A+ + Sbjct: 188 ----LAQANRIVLVIGPEGGLDDGEVDDLTALG-AEPVLLGPEILRTSTAAAVALGAIGV 242 Query: 240 ICGDW 244 + W Sbjct: 243 LTERW 247 >gi|295396065|ref|ZP_06806248.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294971006|gb|EFG46898.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 259 Score = 165 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 20/254 (7%) Query: 10 LFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67 PL T + + V RM G+ + L +G I +S+ Sbjct: 6 FLTQTPLAGATGTITVGPEVAGHAVRVRRMGAGEELELIDGTGMRLRGTIQEGTPESLTL 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 V + ++ + + + K +R I+ + E+G+ A+ P + + + H Sbjct: 66 SVTEVTEEPQQRPRLALVQALSKNDRDIQAIEAATEVGVDAVIPWAAQRSIADWPAKKAH 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--------- 172 + +A Q +P + + + +++ DET Sbjct: 126 KMAAKWSNVLTAATLQARRTRVPELGELIRGTAVTQLVTPTSRVIVLDETESTGLTEAVN 185 Query: 173 --GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 G N+ + + I + +++GPEGG E + L S T + LGP ILR+ TA Sbjct: 186 DLGQGNTTQDNISQGDIDQIVVIVGPEGGITPAEIDALVSAGARTAV-LGPTILRASTAG 244 Query: 231 VAAMALVQAICGDW 244 A+A+VQ + G W Sbjct: 245 PVALAIVQTLLGRW 258 >gi|254432379|ref|ZP_05046082.1| conserved hypothetical protein [Cyanobium sp. PCC 7001] gi|197626832|gb|EDY39391.1| conserved hypothetical protein [Cyanobium sp. PCC 7001] Length = 271 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 21/255 (8%) Query: 3 IHSHLKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI- 58 + L+RL VD PL + HYL VLR+++GD + +G W + + Sbjct: 1 MGRELRRLLVD-PLRLTEAGGLLPLERGELHYLRRVLRLRQGDRFAVVDGLGRLWSANLQ 59 Query: 59 SYVGKSIRFKVEYQ------SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112 + + + Q + ++ +P + + + +++ + E+G+ I+ + Sbjct: 60 TDPARQEGAALLEQPFERPLEQGPRPAPPLRLAIAPPRRDG-EVLLRMACELGIDQIQWL 118 Query: 113 ITRYT-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171 + + +R R+ A EQC+ L LP P + ++ A Sbjct: 119 SAERSVVDAPPREERQRSVLREALEQCERLWLPRSSGPEPAAAWFARQPEDQLLLLATTR 178 Query: 172 CGSENSLEKLH-------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 C L ++ A V + +GPEGG+ E+E ++ +SLG IL Sbjct: 179 CSDAAPLLEVLEREGSKVASPDSSTVTLAVGPEGGWSPLEQEQALERGWL-AVSLGDGIL 237 Query: 225 RSDTAAVAAMALVQA 239 R+ TAAVA + L+ A Sbjct: 238 RTSTAAVAGVTLLSA 252 >gi|260435986|ref|ZP_05789956.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109] gi|260413860|gb|EEX07156.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109] Length = 237 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 L + ++ HYL VLR++ G+ + L +G + + K + Q Sbjct: 5 PDRLEQGGSVLLNIEEQHYLRRVLRLRCGERVDLIDGCGRLTTATLVE-PKLLALDKPAQ 63 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYT 131 Q + + ++ +D +++ + E+G+ I+P+ + +R T Sbjct: 64 LIESLAQPHLGLAVALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPERWATII 122 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 A EQC+ L P + L +++ + ET H + Sbjct: 123 REAVEQCERLWTPQLLDLKDLSQWMEDERGQRLVGVTRETSTPALDQWLRHQADPVQLTW 182 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +++GPEGG+ EE + + P+ +G ILRS TAAVA Sbjct: 183 LMVGPEGGWTEEELKQFTEAQ-IQPVQMGSTILRSSTAAVA 222 >gi|269956977|ref|YP_003326766.1| hypothetical protein Xcel_2190 [Xylanimonas cellulosilytica DSM 15894] gi|269305658|gb|ACZ31208.1| protein of unknown function DUF558 [Xylanimonas cellulosilytica DSM 15894] Length = 256 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 14/241 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRS 75 + G + + A V R + G+ + + +G + G +R VE Sbjct: 16 VVGGTYVLDGGEGRHAAVVQRKRIGERVDVVDGGGTRLRCVVVAAEGAQVRLGVEEVVTE 75 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 + + + K +R + ++ +VE G A+ P + + R Sbjct: 76 PAPDVALTLVQALAKGDRDELAVEAAVETGADAVLPWQAERSVVVWRGDRAARSRARWVA 135 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLE-KLHA 183 +A +Q +P + T L +V +E + Sbjct: 136 TVRAAVKQARRAWVPDVGDAVTTPQLAARVRDVVAAGGVALVLHEEATTPVAAAPLPTPD 195 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 A+ P + +++GPEGG E L + LGP +LR+ TA A+AL+ G Sbjct: 196 AANPPELLVVVGPEGGIGDAELTRLTDAG-ALAVRLGPHVLRTSTAGPVAVALLAQRLGR 254 Query: 244 W 244 W Sbjct: 255 W 255 >gi|78779053|ref|YP_397165.1| hypothetical protein PMT9312_0668 [Prochlorococcus marinus str. MIT 9312] gi|78712552|gb|ABB49729.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 257 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 20/248 (8%) Query: 7 LKRLFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L RL + + S ++ HY+ V+R+K G I + NGK W + V Sbjct: 4 LTRLIISHERIENIKNNNLELSKEEAHYINKVMRIKNGKEIFISNGKGSLWKA--IKVKN 61 Query: 64 SIRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 ++++ + + + K+ + +++ E+G+ I+P+ + N Sbjct: 62 DCLEIIQFKKPYLFQEQEIYLLGIAVVIPKSG-FEDILKMCTEIGIDFIQPLFSERQVNK 120 Query: 121 H----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCG 173 + + R + A EQ + L P I + LK+ D+ ++ + ++T Sbjct: 121 NLNFSRKLLRWNSIINEAVEQSERLWKPSILNGMDIIEWLKSRDNQERVSISITREDTTY 180 Query: 174 SENSLEKLHAIAHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 N + A I IGPEGG+ S+E + + +T + L ILR+ TA+ Sbjct: 181 DLNQWIRKQQEAVNKKGGIFWNVIGPEGGWSSKEIDFFNKNN-ITFVKLSDNILRTSTAS 239 Query: 231 VAAMALVQ 238 + A +++ Sbjct: 240 INASSILN 247 >gi|198284928|ref|YP_002221249.1| hypothetical protein Lferr_2857 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666821|ref|YP_002427610.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249449|gb|ACH85042.1| protein of unknown function DUF558 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519034|gb|ACK79620.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 241 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 17/229 (7%) Query: 7 LKR--LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63 + R L+ D L H+L VLR + G + LFNG + + ++ + G Sbjct: 1 MPRIHLYADSDLPESGPFLLPAGASHHLLKVLRARHGQELTLFNGDGWMYQASLTGISGA 60 Query: 64 SIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + + Q RS +Q + R D+ +QK+VE+G+ I+PV R+ Sbjct: 61 QAQLAIRGRQPRSTGSPLAIQVFLPLTRGERWDWSLQKAVELGVRWIQPVACRHGVVQLS 120 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + R R I+A EQ T+P + PP LE W F + G + Sbjct: 121 EARGEKRLARWRDIVIAACEQSGSTTIPELAPPVALETA---WAGVRGAAFVLDPEGGQR 177 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + H P + +L GPEGG +EE + F L +GPRILR Sbjct: 178 FTDLGH---PGPEITLLSGPEGGLAAEEVAAAQAHGF-RSLRMGPRILR 222 >gi|320104496|ref|YP_004180087.1| hypothetical protein Isop_2973 [Isosphaera pallida ATCC 43644] gi|319751778|gb|ADV63538.1| protein of unknown function DUF558 [Isosphaera pallida ATCC 43644] Length = 270 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 17/235 (7%) Query: 5 SHLKRLFVDF--PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62 + L R ++ +L+ VLR + GD + +F+ ++++ +G Sbjct: 12 ARLDRFHHPDLGDPRPGVSIGLGEEEGRHLSIVLRHRRGDRVEVFDSLGRVVIARVESLG 71 Query: 63 KSIRFKVEYQSR-----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 V + +T + V+ +P K RL+++I+KS E+G+ + + R Sbjct: 72 SKRESTVLVVEQVGGILDRTPRRRVRLAVAPPKGERLEWLIEKSAELGVEHVTLIHCRRG 131 Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 + +D++R I A+QC L I L + + + Sbjct: 132 VASLEGGSPKLDKLRRKVIEVAKQCRRNRLMTID-ALDFRTYLAQETAAWRWLCHPDDAQ 190 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A++ +A LIGPEGG+ S+E + + P LG ILR +T Sbjct: 191 PPEP----EALSDPQPLAALIGPEGGFESDELAEARAWGW-RPTRLGSPILRVET 240 >gi|239906459|ref|YP_002953200.1| hypothetical protein DMR_18230 [Desulfovibrio magneticus RS-1] gi|239796325|dbj|BAH75314.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 241 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 F+ +G + + A VLR + G+ + F+G L +I VG+ + Sbjct: 7 FFIPPEQFA-APFSLTGGEASHCAKVLRKRPGELVRAFDGTGHHGLFRIETVGRDRVELI 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDR 126 E + + ++ R D+ ++K+VE+G I TQ + Sbjct: 66 PESLEETPPPARRLHIAAGFSRSARRDFFLEKAVELGAAGIVFWQAERTQGKMPGDPKEA 125 Query: 127 VRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 I+AA+QC LP + P L K + E L A Sbjct: 126 WTAGLIAAAKQCGAALLPTLACVPGGAAGLTKAGQAYPRRFLLWEDPAVSRPLTPTDLAA 185 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + + +GPEGG+ E T+ + F+ P++LGPR+LR +T Sbjct: 186 AGDTLCV-VGPEGGFTDAEATTITAAGFI-PVTLGPRVLRWET 226 >gi|32476393|ref|NP_869387.1| hypothetical protein RB10359 [Rhodopirellula baltica SH 1] gi|32446938|emb|CAD78844.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 280 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 93/267 (34%), Gaps = 47/267 (17%) Query: 8 KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 +R +V + ++ + + V+R++ GD I LF+G + +++ V K Sbjct: 3 RRYYVPDLQTQVPVVQLPDEEASHASRVMRVQTGDQIELFDGCGHQADAEVVSVSKRECV 62 Query: 67 FKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123 + + + S V K +R MI++ E+G+ + P++ TQ Sbjct: 63 VRCDAIEAVDREPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQRPPKENF 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----------------NWDHNCQIV 166 +D++R I + +Q L I P + W +V Sbjct: 123 LDKLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQWSWQRVLV 182 Query: 167 FADETCG---------------------SENSLEKLH----AIAHIPNVAILIGPEGGYH 201 ++ ++ +++ + P LIGPEGG Sbjct: 183 AMPDSPPLSATDVEPTGVRQTGAAQTGVGQSDARQINTGQSGLNDRPRTLALIGPEGGLS 242 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDT 228 E + + + LG RILR +T Sbjct: 243 EAEHQRCVDVG-AESIGLGRRILRIET 268 >gi|120602447|ref|YP_966847.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris DP4] gi|120562676|gb|ABM28420.1| protein of unknown function DUF558 [Desulfovibrio vulgaris DP4] Length = 249 Score = 164 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ F+ + +G + +L V+R+ GD I L +G E + +++ ++I Sbjct: 1 MRTFFLSSEQWS-SPYALTGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNIV 59 Query: 67 -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123 E + S K R ++++K+VE+ AI ++Q+ + Sbjct: 60 ELTPESITTHPEPVSRAVLAVGWGKAVRRSWLMEKAVELEASAIWLWQADHSQSPVPDDI 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + ++ A+Q LP + P +E LL+ + E E LE Sbjct: 120 KESWLAQMVAGAKQSANPWLPALRTLPGGIEELLRASSDFERRFMLWEGETPEALLEA-K 178 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + + ++GPEGG+ + E + L + P+SLG R+LR +TAA+ + L G Sbjct: 179 DVGGVGTTLYVVGPEGGFSAREVKALRE-GGMMPVSLGQRVLRWETAALLCLGL--HWWG 235 Query: 243 D 243 Sbjct: 236 R 236 >gi|289549080|ref|YP_003474068.1| hypothetical protein Thal_1310 [Thermocrinis albus DSM 14484] gi|289182697|gb|ADC89941.1| protein of unknown function DUF558 [Thermocrinis albus DSM 14484] Length = 247 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 16/239 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++R + G++ ++ R K G + +F + +L + + K Sbjct: 8 AMQR--TVATFRRGDLFRIEGEELKHIFA-RRWKVGQKVEVF-WEGRLFLCVLESISKKG 63 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119 +E S + Y P++ ++D++++K E+G + P+++ + Q Sbjct: 64 AVCRILEEISTRPAEPYVYLYQCVPVEIGKMDFIVEKVSEVGAYQLTPLLSSRSFQNLQA 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +R R S+ +QC I P T LE LK C ++ ++ G E L Sbjct: 124 LEKRYERWRRIAFSSFKQCGRPIPLEIAPVTHLED-LKCRGGVCMVL---DSFGGEIWLS 179 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +++ + + V +++GPEGG+ +E + L F+ P+ L P LRS+TAAV A+ LV Sbjct: 180 EVN-LKDVKEVHLVVGPEGGFSEKEVQLLREKGFL-PVRLRPYTLRSETAAVLAVGLVM 236 >gi|167895917|ref|ZP_02483319.1| hypothetical protein Bpse7_19396 [Burkholderia pseudomallei 7894] Length = 193 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 9/165 (5%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 + + R ++ EQC LP I P + L Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPA 180 >gi|328946995|ref|YP_004364332.1| ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] gi|328447319|gb|AEB13035.1| Ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] Length = 269 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 33/267 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI--LLFNGK-DGEWLSKISYVGK 63 +++ V+ PL G +YHYL VLR+K GD I L +G ++KI K Sbjct: 1 MRQFIVETPLDSDGCIGIQGKKYHYLNSVLRVKCGDMIYARLLDGSLQQMTVAKIVSCEK 60 Query: 64 SIRFK----------VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPV 112 I + + + K Y+F K ++D +I+++ E G+ I PV Sbjct: 61 KIILQAAGKLNCNDSISQAAPVLEKPKAEIYLFQFEAKPPKMDLIIRQATECGVCGIIPV 120 Query: 113 ITRYTQN-----THYNM----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159 + Q +R + A +Q ++ ++E W Sbjct: 121 EGEFCQKGNIESARKKSESGDERWQRIVTEARQQSGSPVETKVFYSVSVEEACGFWSSLQ 180 Query: 160 -DHNCQIVFADETCGSENSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 +H +V + + G+++ L +A+ +G EGG +E + F+ Sbjct: 181 AEHKAALVLYERSDGTKSIYNALKNADVIKKENAKIAVAVGAEGGISVQEISIMKESGFI 240 Query: 215 TPLSLGPRILRSDTAAVAAMALVQAIC 241 P+ ILR +TA++ +A +Q + Sbjct: 241 -PVHFDTNILRCETASLYGIAALQTVL 266 >gi|325963346|ref|YP_004241252.1| hypothetical protein Asphe3_19630 [Arthrobacter phenanthrenivorans Sphe3] gi|323469433|gb|ADX73118.1| conserved hypothetical protein TIGR00046 [Arthrobacter phenanthrenivorans Sphe3] Length = 244 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 12/239 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75 G + + V R+ G+ + + +G ++ S + + E Sbjct: 2 AAGEVFVLEGQEARHAVTVKRLAPGEPVDIVDGAGTRMRGRVVAASASGLEVECETLVFE 61 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 + + + + + K +R + I+ + E+G+ A+ P + + + ++ Sbjct: 62 EQPGTRLVLVQALAKGDRDELAIETATELGIDAVIPWQSERSIVRWKGDRAAKAHAKWQS 121 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHA--IA 185 +AA+Q +P + L + V E LE + Sbjct: 122 VVTAAAKQARRAWVPEVRAAVDTAALAGAVEAAELAVILHEDAVRPLRAVLEAWQGADAS 181 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L VT L LG +LRS TA AA+ L + G W Sbjct: 182 GPAEVLLIVGPEGGISPREVTRLCGKGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 239 >gi|237756071|ref|ZP_04584649.1| conserved surface protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691764|gb|EEP60794.1| conserved surface protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 236 Score = 163 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 15/241 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 L R F+ +Y++ VLR+K+ D I + +L+K+ + K+ Sbjct: 3 LPR-FIGEK--EGNYLVLKDQEYNHAVKVLRVKQNDLIEINTFDGNVYLAKVEDISKNQL 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 I +E + + Y P + +++D +I+ ++G+ + PVI++ + Q+ Sbjct: 60 IALSIEKIPIKEEEFKITLYQCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDV 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +++ + +++ +QC I P L + N ++VF ++ +N ++ Sbjct: 120 AKKLEKWQRIALNSIKQCKRPFPLIIEKPIKLYNIKSN--DELKVVFYEKE--KQNKIKM 175 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L V++ IG EGG+ EE E L F+ PLSLG IL+ +TA + + ++ I Sbjct: 176 LMN-KTFKTVSVFIGNEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233 Query: 241 C 241 Sbjct: 234 L 234 >gi|307297950|ref|ZP_07577754.1| protein of unknown function DUF558 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916036|gb|EFN46419.1| protein of unknown function DUF558 [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 163 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 17/237 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 FV L + G + +L V R K GD + +G+ + + +GKS Sbjct: 5 FFV---LPEDNRVILDGGETKHL-RVTRAKPGDELTGIDGRGTVYRFLLEELGKSSASGT 60 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDR 126 V + + + + K RL +I+K+ E+G+ I + + + + + Sbjct: 61 VVEREYVERDGKSITVAVAATKWPRLHILIEKATELGVDRIELFNSLRSVSRVDETKLTK 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 AA+Q +P I TL + + ++ G LE +A Sbjct: 121 FNAVAREAAKQSVNPYIPEITVSQTL-----PLEGSYNLLL---EFGGRPLLEVEEKLAC 172 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + +++GPEGG+ EE + + + TP+SLG R LR +T+ + + ++ G Sbjct: 173 ERKLRLIVGPEGGFAPEEIKDISTR--CTPVSLGRRTLRVETSVIVVLGIINYRLGR 227 >gi|254526209|ref|ZP_05138261.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus str. MIT 9202] gi|221537633|gb|EEE40086.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus str. MIT 9202] Length = 257 Score = 163 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 100/248 (40%), Gaps = 20/248 (8%) Query: 7 LKRLFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L RL + + S ++ HYL V+R+K G I + NG+ W + V Sbjct: 4 LTRLIIAHERIENIKNNNLELSKEEAHYLNKVMRIKNGKEIFITNGEGSLWKA--IKVKN 61 Query: 64 SIRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 ++ + + + + K+ + +++ E+G+ I+P+ + N Sbjct: 62 DCLEIIKLKKPYLFQEQEIYLLGIAVVIPKSG-FEDILKMCTEIGIDYIQPLFSERQVNK 120 Query: 121 H----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCG 173 + + R + A EQ + L P I + LK+ D+ ++ + +E Sbjct: 121 NLNFSRKLLRWNSIIKEAVEQSERLWKPSILNGMDIIKWLKSRDNQERVSISITREEPPY 180 Query: 174 SENSLEKLHAIAHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 N + I IGPEGG+ S+E + + +T + L ILR+ TA+ Sbjct: 181 DLNKWLRKQQEFANKKGGIFWNVIGPEGGWSSKEIDFFNKNN-ITFVKLSDTILRTSTAS 239 Query: 231 VAAMALVQ 238 + A +++ Sbjct: 240 INASSILN 247 >gi|116670781|ref|YP_831714.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter sp. FB24] gi|116610890|gb|ABK03614.1| protein of unknown function DUF558 [Arthrobacter sp. FB24] Length = 258 Score = 163 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 16/245 (6%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQS 73 + G + + V R+ G+++ + +G ++ V + + + Sbjct: 15 EQVPGSHFVLQGAEARHAITVKRIAVGESVDIADGAGKRLTGTVAAVDQGELTVECSVLE 74 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRV 127 + + + + K +R + + + E+G+ A+ P + + + + Sbjct: 75 TEERPDLRLVLVQALAKGDRDELAAETATELGIDAVIPWQSERSIVRWKGERAAKAHAKW 134 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHA-- 183 ++ +AA+Q +P + L + E LEK H Sbjct: 135 QSVVTAAAKQARRAWIPEVRSAVDGAGLQSAVAAADLAIILHEDAVRPLRAVLEKWHDGE 194 Query: 184 ----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + +++GPEGG E L S VT L LG +LRS TA AA L Sbjct: 195 GGTPGSGPREILLIVGPEGGISPREVTKLCSAGAVTAL-LGHHVLRSSTAGPAATVLASD 253 Query: 240 ICGDW 244 I G W Sbjct: 254 ILGRW 258 >gi|293189695|ref|ZP_06608412.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus F0309] gi|292821433|gb|EFF80375.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus F0309] Length = 262 Score = 163 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 18/246 (7%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ 72 L + G + + A V R+ G+ + + +G ++S K S+ V Sbjct: 16 ASLSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEVSGSDKASLSLVVREL 75 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126 R +V + + K R + ++ E+G+ + P ++ + Sbjct: 76 VREDAPSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRAIVQWKGPKAEKGRAK 135 Query: 127 VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +AA+Q +P + L + + + F ++ L Sbjct: 136 WEGVARAAAKQSRRAFVPVVEDVKDSRELASWVASLIGEAGVAFVCHEEAMDSLGAALAR 195 Query: 184 IAH-------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +A+++GPEGG ++E L + LG +LRS TA A+ L Sbjct: 196 VQESRADGTLPSRIALIVGPEGGIGADETAQLVDAG-ARAIGLGDNVLRSSTAGAVALTL 254 Query: 237 VQAICG 242 ++A G Sbjct: 255 IRAAAG 260 >gi|332704197|ref|ZP_08424285.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio africanus str. Walvis Bay] gi|332554346|gb|EGJ51390.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio africanus str. Walvis Bay] Length = 248 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 10/238 (4%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 +I+S + P + +L VLR G + LF+G+ + L ++ Sbjct: 3 RINS----FYCP-PERWNEPFVLDSGETQHLIKVLRTPLGATVRLFDGQGRDGLFRLISA 57 Query: 62 GKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + ++E + + Q+++ K R D++++K+VE+ + + +Q Sbjct: 58 DRKGALLELESVTVHERHQTELVVALGWNKAGRRDWLLEKAVELEVAGLWFWQAGRSQGH 117 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D + ++AA+QC LP + + L+FL+ + E G E + Sbjct: 118 VPEQPKDSWQPKLVAAAKQCANPWLPELATLSDLKFLVDASKRYPRRFLLWEAPG-EKLI 176 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + + + NV +++GPEGG E ETL S F+T SLG RILR +TAA+ M L Sbjct: 177 DPVLDLGGQGNVLMVLGPEGGLEKAEAETLISAGFMTR-SLGSRILRWETAALLGMGL 233 >gi|284990178|ref|YP_003408732.1| hypothetical protein Gobs_1645 [Geodermatophilus obscurus DSM 43160] gi|284063423|gb|ADB74361.1| protein of unknown function DUF558 [Geodermatophilus obscurus DSM 43160] Length = 255 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 13/227 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68 LF+ L G + + VLR+ G+ + + +G+ +++ G + +R + Sbjct: 18 LFLLDELPDTADLLVDGAEGRHAVDVLRLTPGERVRVGDGRGTVAAGEVTAAGPQGLRVQ 77 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V + ++ + + K R ++ + E+G+ I P Sbjct: 78 VSARHEVPPPALELVLVQALPKGERGPLAVELATELGVDRIVPWAASRCVTRWREDRAAK 137 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKL 181 + + R +A++Q +P + T + D + +V ++ +E Sbjct: 138 GVAKWRAAARAASKQSRRPRVPEVTDVLTTRQVCGALADVDVALVLHEQARHPLARIE-- 195 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + ++A+++GPEGG E L++ P+ LGP +LR+ T Sbjct: 196 --LPTSGSIAVIVGPEGGLSDGEVVALNAAG-ARPVRLGPEVLRTST 239 >gi|294155674|ref|YP_003560058.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145] gi|291599900|gb|ADE19396.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145] Length = 228 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 22/239 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F D + +L V+R + +++FN + + + I Sbjct: 1 MNRFFSDHK--EGEYLLLDMNVLKHL-KVIRANNKNFVVVFNEE--FYECCLENDKAKII 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QN 119 K+ + V S IK +R ++++QK++E+G I P+I+ +T Sbjct: 56 SKINEYHEIGYE---VILAASIIKIDRYEWLLQKAIELGATRIVPIISEHTDGSLYKNNK 112 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178 +R + SA+EQ L + P + E ++K N +I+ ++ N Sbjct: 113 FINKYERFNSIIKSASEQSFRNKLIKLDNPMSFNEAIIKYRYINNKIIAHEKIDLENNDY 172 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++ +V I +GPEGGY +E + + +SLG RILR+++A++ ++ + Sbjct: 173 RNINS-----DVIIFVGPEGGYSKKEIDLSVKNDY-KVVSLGRRILRAESASIYLLSQL 225 >gi|87302174|ref|ZP_01084999.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701] gi|87283099|gb|EAQ75055.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701] Length = 261 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 15/250 (6%) Query: 3 IHSHLKRLFV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + L+RL + L T + ++ YL+ VLR G+ + +G W + + Sbjct: 1 MVRELRRLLIAPERLAAGTTLALAPEESRYLSRVLRYGPGERFAVVDGWGQLWSAVLLD- 59 Query: 62 GKSIRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 G R + + R ++ + + + D +++ + E+G+ ++P++ + Sbjct: 60 GPQARLEQPLGQPLQRQAAASPWLELAVAIPRLD-FDVVVRMACELGVDRLQPLVAEHGA 118 Query: 119 NTH-YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R + A EQC+ L LP + P L ++ + Sbjct: 119 RRGSWKASRWQAILREACEQCERLWLPQLLEPLEAITYLGETRAALALLASTREAELPLL 178 Query: 178 LEKLHAIAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L P VA+ IG EGG+ + +SLGP ILR+ TAAV Sbjct: 179 GTALAQAPADPLAGAMDGVALAIGAEGGWSPA-EGAAAQAAGWQAVSLGPHILRTSTAAV 237 Query: 232 AAM-ALVQAI 240 A + +LVQ Sbjct: 238 AGLASLVQWR 247 >gi|308177465|ref|YP_003916871.1| hypothetical protein AARI_16860 [Arthrobacter arilaitensis Re117] gi|307744928|emb|CBT75900.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117] Length = 257 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 15/243 (6%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FKVEYQ 72 + +G + H+ V R+ G+++ L +GK +++ K + KV + Sbjct: 14 QEAAPGDILELAGAEAHHAVTVKRVTAGEHLDLLDGKGLRLTVEVTATAKDLLSVKVLRR 73 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 + V + + K +R ++ VE+G+ A+RP + M + Sbjct: 74 TEEAISDHPVTLVQALSKGDRDLQAVESGVELGVLAVRPWQADRSIVRWNAAKVDKAMAK 133 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-----CQIVFAD--ETCGSENSLE 179 R SA +Q P + P + L K + +V + E +E + Sbjct: 134 WRAQVRSAQKQSRRAYEPEVLAPLGSKELAKTIAADVANGALVLVLHEQAENSVAERVIS 193 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 L V +++GPEGG E ++ L LG +LR+ TA AA+ L++ Sbjct: 194 WLPRAHAGQEVIVIVGPEGGISDTELQSFIDAGAHAAL-LGQHVLRASTAGPAALVLIRH 252 Query: 240 ICG 242 + G Sbjct: 253 LIG 255 >gi|291287099|ref|YP_003503915.1| hypothetical protein Dacet_1187 [Denitrovibrio acetiphilus DSM 12809] gi|290884259|gb|ADD67959.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM 12809] Length = 228 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 16/237 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 +KR+++ L + GD +HYL +V+R K GD I + D I+ +GK Sbjct: 1 MKRIYLAQKLT--DIFELEGDYFHYLKNVVRAKAGDLIGVL-ADDEYAECTITDMGKRNA 57 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYN 123 VE ++ ++ +K +D+ ++K E+G I PVI+ + N Sbjct: 58 VMSVESCRPAKRYTHKLKVYQCLLKREYMDFAVEKYTELGATEIVPVISERSLNDLKDKT 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 M R ++ AA Q + LP I+ + + D ++F E C + Sbjct: 118 MQRYHDISVKAALQSENEQLPVIHDAVGIADI--QPDMQSNLIF-YERCEERGCFNTTNE 174 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 ++ I+IGPEGG+ EE L F TP+ IL+++TA+V ++ + Sbjct: 175 MS------IVIGPEGGFTEEEYHMLKDKGF-TPVRPIDNILKAETASVVFTGYIRIL 224 >gi|283851945|ref|ZP_06369221.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B] gi|283572669|gb|EFC20653.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B] Length = 249 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 ++ P +G + H+ VLR + G+ + F+G E L I V + + + Sbjct: 9 FYLP-PEAFAAPFALTGGEAHHCVRVLRKRPGEVVRAFDGLGREGLFTIMDVARDRVELE 67 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDR 126 V + + + + ++ R D+ ++KSVE+G I ++Q + Sbjct: 68 VLSVTEAPRPECRLHLAAGFSRSARRDFFLEKSVELGAAGIVFWQAEHSQGRMPAVPKEA 127 Query: 127 VRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 ++AA+QC LP + P L + E G L L +A Sbjct: 128 WTATLVAAAKQCGAARLPALSVVPGGAAGLAALGSGFDRRYLLWEAPGLSRRL-ALADVA 186 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 N ++GPEGG E ET S F LSLG R+LR +T Sbjct: 187 VPGNALFVLGPEGGLTDAEAETCVSAGFA-ALSLGDRVLRWET 228 >gi|218885444|ref|YP_002434765.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756398|gb|ACL07297.1| protein of unknown function DUF558 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 239 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 9/235 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65 ++ F+ + G + +L V+R++ GD++ L +G+ E +++ K+ + Sbjct: 1 MRTFFLPPERWAE-PYLLEGQEARHLVKVVRVRVGDSVRLLDGRGREGEFRVTDTEKALV 59 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYN 123 R + + S K R ++++K+VE+ G I +Q+ Sbjct: 60 RLEPVSITEHPAPASQAVLAIGWGKEVRRGWLMEKAVELEAGGIWLWQAERSQSRVPEET 119 Query: 124 MDRVRTYTISAAEQCDILTLPFIY--PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + A+Q LP + P E + D + + + G L Sbjct: 120 RESWHAQMEAGAKQSRNPWLPELRTLPGGVAELAEASRDFAKRFILWEGDTGG--VLLGA 177 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 I ++GPEGG+ E L + + +SLG R+LR +TAA+ + L Sbjct: 178 GDIGQPGRTLFVVGPEGGFSDREVAALLNSG-MQAVSLGNRVLRWETAAMLCLGL 231 >gi|256832772|ref|YP_003161499.1| hypothetical protein Jden_1548 [Jonesia denitrificans DSM 20603] gi|256686303|gb|ACV09196.1| protein of unknown function DUF558 [Jonesia denitrificans DSM 20603] Length = 257 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 84/253 (33%), Gaps = 31/253 (12%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQ 72 G + + V R G+ I + +G I++V G+ + V Sbjct: 14 AAYREGDTYYLDGVEGRHAGVVQRRSVGEAIDIVDGHGTRLSCTITHVSGEHLDLLVTSV 73 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDR 126 S Q + + + K +R + I+ + E+G+ + P ++ + R Sbjct: 74 SHESCGQYRLTLVQALAKGDRDELAIEAATEVGVDRVIPWQADRSIVVWRGARAAKSHAR 133 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----NWDHNCQIVFADETC--------- 172 SA +Q LP + P T + L+ V + Sbjct: 134 WVATVRSAMKQARRARLPMVEQPVTSQQLVDVIAETTQTGGVVYVLHESATTALTSQPRP 193 Query: 173 -GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G E + GPEGG E E + + LGP +LR+ TA Sbjct: 194 PGGEELAPVDVVVVV--------GPEGGISDSELEKFTAAG-AQAVLLGPHVLRTSTAGP 244 Query: 232 AAMALVQAICGDW 244 A+AL+ A G W Sbjct: 245 VALALLSASTGRW 257 >gi|320533957|ref|ZP_08034521.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133834|gb|EFW26218.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171 str. F0337] Length = 270 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 96/247 (38%), Gaps = 21/247 (8%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQ 72 T +G + + V R++ + + L +G L +++ G + ++ + Sbjct: 24 AGTVLMLTGPEARHAVTVKRLRAQERVDLVDGAGLRLLCEVTGAGVGGAKDCLAVRILER 83 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 + + + K R + ++ + E+G G + P + R Sbjct: 84 VEEPAPLLRLTLVQALAKGGRDEQAVETATEVGAGLVLPWQSERCVSVWQGVKQAKGRQR 143 Query: 127 VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKN--WDHNCQIVFADETCGSENSLE-- 179 + + AA+Q +P + L ++ D +V +E ++ Sbjct: 144 WQATALQAAKQARRARMPEVEEVRDTRRLADWVEQTVRDGGVVLVLHEEASTPISTAMES 203 Query: 180 -KLHAIAHIPNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +L A P V A+++GPEGG EE L + +T + LGP ++R+ +A A+A++ Sbjct: 204 VRLPAPGEAPLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVL 262 Query: 238 QAICGDW 244 G W Sbjct: 263 AHASGLW 269 >gi|41408259|ref|NP_961095.1| hypothetical protein MAP2161c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396614|gb|AAS04478.1| hypothetical protein MAP_2161c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 253 Score = 162 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 + D + GD+ + A V R++ G+ ++L + G ++ + G+ +R + Sbjct: 6 FYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDRAGGLARCEVEHAGRDGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + V + + K+ R + ++ + E G R V + Sbjct: 66 VLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179 + R R +AA Q +P + + L +++ +V A ++ + Sbjct: 126 GLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESATDRLTD 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +A ++ ++IGPEGG +E L ++ + LGP++LR+ T Sbjct: 186 V--PVAQAKSLFLVIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231 >gi|162455373|ref|YP_001617740.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56'] gi|161165955|emb|CAN97260.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56'] Length = 252 Score = 162 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 + Y+ V R++EGD ++F+ + E + + +G+ R + Sbjct: 19 IALPPEAASYVVRVHRLREGDRFVVFDPELGVEAEATLESIGRRGAEARIDAPRPAALRP 78 Query: 81 --DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNMDRVRTYTISAAE 136 V +I + K +++D +++ + E+G I P I+ + R R I AA Sbjct: 79 GRRVTWIQAVGKGDKMDAVVRDATELGATRIIPAISARSVARPAEEKSQRWRRIAIEAAR 138 Query: 137 QCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 QC P + P +L L + + +L A++ A Sbjct: 139 QCGRGDAPRVEAPMSLAAALAEAGAAPSTEGGALGMCLDPYAETPLGARLAALSPGMEAA 198 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +GPEGG+ EE +L F + LG LR++T AA+ + Sbjct: 199 FAVGPEGGFTPEELGMCAALGFER-VRLGALTLRTETVCAAALGAL 243 >gi|294790827|ref|ZP_06755985.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304] gi|294458724|gb|EFG27077.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304] Length = 250 Score = 161 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 92/238 (38%), Gaps = 14/238 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + + +R+ + D + + +G +++ + ++ + Sbjct: 17 SANQLFQLPPSARQHAFKAMRLSKDDLLEISDGAGNRLRAQVVN-PQEGTVRIVSEQYEP 75 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 + + + K++R + I+ + E+G+ I P + + + + Sbjct: 76 QPSIKLGLVQALAKSDRDEQAIEMATEIGVDFILPWQADRSIVQWKGPKAARGLRKWQDQ 135 Query: 131 TISAAEQCDILTLPFIYPPTT---LEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIAH 186 I A EQ +P + P LE + K D Q++ + + S ++ Sbjct: 136 LIMATEQSRRSRIPRLNPLVASSGLEEWIRKEVDAGSQVLLLHQDA--DLSWSQVSLPET 193 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 P +++++GPEGG +E E + P+ LG ILR+ +A A+AL+ G + Sbjct: 194 SPMISVIVGPEGGISDKEVEAFAAAG-AKPVLLGHTILRASSAGPVALALLSGALGRF 250 >gi|188997402|ref|YP_001931653.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp. YO3AOP1] gi|188932469|gb|ACD67099.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp. YO3AOP1] Length = 236 Score = 161 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 15/241 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 L R F+ +Y++ VLR+K+ D I + +L+K+ V K+ Sbjct: 3 LPR-FIGEK--EGDYLVLKDQEYNHAVKVLRIKQNDLIEINTLDGNVYLAKVEDVTKNQL 59 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120 I +E + + Y P + +++D +I+ ++G+ + PVI++ + Q+ Sbjct: 60 IALPIEKIPVKEEEFKITLYQCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDV 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +++ + +++ +QC I P L + + + ++VF ++ +N ++ Sbjct: 120 TKKLEKWQRIALNSIKQCKRPFPLIIEKPIKLYNI--KCNDDLKVVFYEKEQ--QNKVKM 175 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L + ++ IG EGG+ EE E L F+ PLSLG IL+ +TA + + ++ I Sbjct: 176 LMN-NNFKTASVFIGNEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233 Query: 241 C 241 Sbjct: 234 L 234 >gi|118618898|ref|YP_907230.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium ulcerans Agy99] gi|118571008|gb|ABL05759.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 253 Score = 161 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 +VD GD+ + A V R++ G+ ++L +G + + + + + Sbjct: 6 FYVDTVPEAGELAALDGDEGFHAATVRRIRPGEQLVLGDGAGELARCVVEHAARDGLTAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K+ R + ++ + E G A Sbjct: 66 VLQRWSVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLE 179 + R R+ SAA Q +P + + L++ Q +V A ++ +E Sbjct: 126 GLRRWRSAVRSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVE 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+A ++ +++GPEGG EE + L V+ + LGP +LR+ T Sbjct: 186 T--AVAQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTST 231 >gi|271963819|ref|YP_003338015.1| hypothetical protein Sros_2291 [Streptosporangium roseum DSM 43021] gi|270506994|gb|ACZ85272.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 243 Score = 161 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 31/252 (12%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 + + + G + + A V R++ G+ + L +G + G+ S+R + Sbjct: 6 FLAEPADLARDEFTFGGPEGRHAAAVRRLRAGERLDLTDGAGTVAECVVRDAGRDSLRVE 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V + + + + K +R + ++ E G+ I P + Sbjct: 66 VLRRYEVAAPRPRLVVVQGLPKGDRGELAVEMMTEAGVDVIVPWAAARCVTQWKGERAVK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +++R R+ A +Q LP + P T ++ V E S S +L Sbjct: 126 SLNRWRSTAREAGKQSRRFHLPEVTEPATTAGVVALLSAAALGVVLHEEAASPLSTLELP 185 Query: 183 AIAHIPNVAILIGPEGGY----------HSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 G EE V P LGP +LR+ TA VA Sbjct: 186 GA-------------GDIVVVVGPEGGVADEEIGAFREAGAV-PALLGPTVLRTSTAGVA 231 Query: 233 AMALVQAICGDW 244 A A++Q G W Sbjct: 232 AAAVLQTRTGRW 243 >gi|183983662|ref|YP_001851953.1| hypothetical protein MMAR_3682 [Mycobacterium marinum M] gi|183176988|gb|ACC42098.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 253 Score = 161 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 +VD GD+ + A V R++ G+ ++L +G + + + + + Sbjct: 6 FYVDTVPEAGELAALDGDEGFHAATVRRIRPGEQLVLGDGAGELARCVVEHAARDGLTAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K+ R + ++ + E G A Sbjct: 66 VLQRWSVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLE 179 + R R+ SAA Q +P + + L++ Q +V A ++ ++ Sbjct: 126 GLRRWRSAARSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVD 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 A+A ++ +++GPEGG EE + L V+ + LGP +LR+ T Sbjct: 186 T--AVAQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTST 231 >gi|154509292|ref|ZP_02044934.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC 17982] gi|153798926|gb|EDN81346.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC 17982] Length = 262 Score = 161 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 18/246 (7%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ 72 L + G + + A V R+ G+ + + +G ++S K S+ V Sbjct: 16 ASLSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEVSGSDKASLSLVVREL 75 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126 R +V + + K R + ++ E+G+ + P ++ + Sbjct: 76 VREDASSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRAIVLWKGPKAEKGRAK 135 Query: 127 VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +AA+Q +P + L + + + F ++ L Sbjct: 136 WEGVARAAAKQSRRAFVPVVEDVKDSRELASWVASLIVEAGVAFVCHEEAMDSLGAALAR 195 Query: 184 IAH-------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +A+++GPEGG +EE L + LG +LRS TA A+ L Sbjct: 196 VQESRADGTLPARIALIVGPEGGIGAEETAQLVDAG-ARAIGLGDNVLRSSTAGAVALTL 254 Query: 237 VQAICG 242 ++A G Sbjct: 255 IRAAAG 260 >gi|124023129|ref|YP_001017436.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9303] gi|123963415|gb|ABM78171.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. MIT 9303] Length = 258 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 13/248 (5%) Query: 4 HSHLKRLFVD-----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58 + L+RL V+ D+ HYL VLR++ G + + +G W + + Sbjct: 1 MAELRRLLVESQRFEAITASDHLLSLKQDEVHYLRRVLRLRNGQAVAVVDGVGHFWEAHL 60 Query: 59 SYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRY 116 G ++ S Q + Q + + R + +++ S E+G+ I+P+ + Sbjct: 61 -QAGDFLKLDTSPSSPCLQQPRHRQQLALAVVIPKRGFEEVLRMSCELGVNRIQPLRSDR 119 Query: 117 T-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 R + A EQ + L P + P L K+ + A Sbjct: 120 CTPQAEDRPLRWKVILREAVEQSEQLWQPELLPIAEASSLWKSAPVHAVFALATTRRQGL 179 Query: 176 NSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L+ L I V + IGPEGG+ E+ + +V P++LG ILR+ TAAVAA Sbjct: 180 IDLQLLMEGLTPEINQVTVAIGPEGGWSPIEECAAEAAGWV-PVALGDSILRTCTAAVAA 238 Query: 234 M-ALVQAI 240 +V + Sbjct: 239 AQTMVSSR 246 >gi|330469600|ref|YP_004407343.1| hypothetical protein VAB18032_28361 [Verrucosispora maris AB-18-032] gi|328812571|gb|AEB46743.1| hypothetical protein VAB18032_28361 [Verrucosispora maris AB-18-032] Length = 244 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 15/229 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 LF+ L G + H+ A V R++ G+ +LL +G+ G + +S VG+ ++ + Sbjct: 5 LFLVESLPTADTMVLDGPEGHHAATVQRLRVGEELLLGDGRGGTAAAVVSAVGRGTLDIE 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 + + + + K +R + +Q E G+ I P Sbjct: 65 ITSRGYVDAANPRLVVVQGIAKGDRGELAVQAMTEAGVDEIVPWAAGRSVAQWRGDRGVR 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWD-HNCQIVFADETCGSENSLE 179 D+ AA+Q LP + P + + V +E ++E Sbjct: 125 ARDKWVATAREAAKQARRAWLPVVAGAPDEPTASVARRISGAAAGYVLHEEATDRLTTVE 184 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + + +++GPEGG E T P+ LGP +LR+ T Sbjct: 185 ----LPDQGEIVLVVGPEGGITPAELATFQQAG-AHPVRLGPSVLRTST 228 >gi|237785905|ref|YP_002906610.1| hypothetical protein ckrop_1323 [Corynebacterium kroppenstedtii DSM 44385] gi|237758817|gb|ACR18067.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 299 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 11/237 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + +G + + V R+ GD+++L NG+ + R + T Sbjct: 60 VGDAVLLTGSEGRHAVTVKRLVAGDSLVLVNGEGDWLRCTVESTPSKTRLRATVLEAGHT 119 Query: 78 KQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTY 130 + + + K++R + + + + G AI P I R+ + Sbjct: 120 PMSTPPITVVQALPKSDRSELAVDLACQAGADAIVPWSASRSIARWKGKEKKAGGKWADT 179 Query: 131 TISAAEQCDILTLPFIYPPTTLEF---LLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 +++++Q LP I +T + ++ + + E S + Sbjct: 180 AVASSKQSRRARLPRIAALSTTDDVVNAIEQVTQSGGLALVLEESESVRVTSLAENLRQA 239 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG +E + T + LGP +LR+ TAA A+ V +CG W Sbjct: 240 SQIMLIVGPEGGIAPDEHDAFVRAG-ATSVVLGPEVLRTATAASVALGAVNVLCGRW 295 >gi|254774749|ref|ZP_05216265.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium subsp. avium ATCC 25291] Length = 253 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 + D GD+ + A V R++ G+ ++L +G G ++ + G+ +R + Sbjct: 6 FYADALPETGALAVLGGDEGFHAASVRRIRPGEQLVLGDGAGGLAHCEVEHAGRDGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + V + + K+ R + I+ + E G R V + Sbjct: 66 VLKRWSVAPGTPPVTVVQALPKSARSELAIELATEAGADGFLAWQAARCVANWHGARVEK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179 + R R SAA Q +P + + L +++ V A +E + Sbjct: 126 GLRRWRAVARSAARQSRRAHIPLVDGVLSTPALTSRIRDEVAGGATVLALHESATERLAD 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +A +V +++GPEGG +E L T + LGP++LR+ T Sbjct: 186 A--DLAGATSVLLVVGPEGGIADDEMAALSDAG-ATAVRLGPQVLRTST 231 >gi|32490916|ref|NP_871170.1| hypothetical protein WGLp167 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166122|dbj|BAC24313.1| yggJ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 205 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 14/209 (6%) Query: 44 ILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR--LDYMIQKS 101 +L+FNGK+ E+L KI + + +S ++ + N+ +D+++QKS Sbjct: 3 VLIFNGKEKEFLGKILKYKNKNTYIFLMHQIHKYVESTLKINLGQVLCNKKSMDFLVQKS 62 Query: 102 VEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155 VE+G+ + P+ + + +N + +DR I +++QC L I P ++ Sbjct: 63 VELGIHTLTPLFSSRSNEFLNKKNLNKIIDRWEKIIIQSSQQCGRNFLLKINDPISIYKW 122 Query: 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVT 215 + +I + + + I N+ +LIGPEGG EE + F Sbjct: 123 CDTKSTSFKIYADPYSEKKIKEINQ-----KIKNINLLIGPEGGLSKEEVFHVEKNNFNK 177 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDW 244 + GPRILR++T+ ++ ++++Q GD+ Sbjct: 178 -IKFGPRILRTETSVISIVSILQMYFGDF 205 >gi|227488406|ref|ZP_03918722.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51867] gi|227543018|ref|ZP_03973067.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51866] gi|227091620|gb|EEI26932.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51867] gi|227181240|gb|EEI62212.1| protein of hypothetical function DUF558 [Corynebacterium glucuronolyticum ATCC 51866] Length = 240 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 11/209 (5%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIR-FKVEYQSRSQTKQ 79 SG + + V R+ G+ ++L +G G + ++ GK + V + Sbjct: 17 FTLSGPEGRHAVTVKRIGPGEIVMLADGHGGRSVGTVTATQGKDVLHVDVTSREEVPPPN 76 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQ 137 V I + K+ R + + + G I P + + ++AA+Q Sbjct: 77 PQVTVIQALPKSERQELTVDLLTQGGADVIVPWEAERCIAKWQPKKAKKWENAAVAAAKQ 136 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 LP I P L+ L D +V +E ++ ++ + +A++IGPE Sbjct: 137 SRRARLPLITKPNALDEALDGVD--LVLVLHEEASVPLAEVD----LSQVRRIALVIGPE 190 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRS 226 GG E E + P+ LGP +LR+ Sbjct: 191 GGLSPAEVERFRAAG-ARPVLLGPEVLRT 218 >gi|50365119|ref|YP_053544.1| hypothetical protein Mfl303 [Mesoplasma florum L1] gi|50363675|gb|AAT75660.1| unknown protein [Mesoplasma florum L1] Length = 238 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 103/242 (42%), Gaps = 14/242 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64 + R FV+ + H++ +V+++K + I + + +KI + + Sbjct: 1 MFRYFVEIKKDNNFFIINNN-DVHHIKNVVKLKNDEIIECV-YEKEVYQTKIIDLTIENN 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118 + ++ + + I ++ + DY++QKS E+G+ I PVI + + Sbjct: 59 VIVEIINKVETTISNVKKVLIAGVLREQKWDYLLQKSTELGVDEIIPVIFKRNVVKIDEK 118 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 + R + +AA+Q T+P + T LKN + +V ++ E Sbjct: 119 KIDQKLQRWQAICDTAAKQAKRTTIPVVNNLITNLKDLKNNLCDLNLVAWEKEKNIE--- 175 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 K + +++ +IG EGG E + LH + F +SLG ILR++TA ++ + Sbjct: 176 LKTYLTQDFNSISFIIGCEGGIEVSEIKILHEIGF-KNVSLGTNILRAETAPTYVLSSLI 234 Query: 239 AI 240 Sbjct: 235 YE 236 >gi|218661479|ref|ZP_03517409.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli IE4771] Length = 151 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 1/132 (0%) Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 +DY++QK+VEMG G ++PV+T++ Q N+D++R + AAEQC +L +P + P L Sbjct: 1 MDYLVQKAVEMGAGLLQPVMTQHVQGKITNLDKLRANVVEAAEQCGVLGIPAVAEPVKLS 60 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 LL W +I++ DE +N L L AI ++A+L+GPEGG+ EE+ L SL F Sbjct: 61 DLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-RHLALLVGPEGGFSEEERARLRSLDF 119 Query: 214 VTPLSLGPRILR 225 VT + LGPRILR Sbjct: 120 VTAIPLGPRILR 131 >gi|94986461|ref|YP_594394.1| 16S ribosomal RNA methyltransferase RsmE [Lawsonia intracellularis PHE/MN1-00] gi|94730710|emb|CAJ54072.1| uncharacterized protein conserved in bacteria [Lawsonia intracellularis PHE/MN1-00] Length = 260 Score = 160 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS 80 + + H+L HVLR++ G I + +G+ E L + + + Sbjct: 33 YILNKKESHHLLHVLRIQIGTEIHVLDGRGREGLFSVKEVIKDRVSLSYINDWMHPEPTR 92 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQC 138 V K R ++ +K+ E+ AI +Q + + + I+ A+QC Sbjct: 93 KVVLAAGWTKAARRGWLFEKAAELEAWAIWFWKAERSQFPLSEAKKESWQGQIIAGAKQC 152 Query: 139 DILTLPFIY-PPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 + P + P +E L+ N D + + V + TCG L + +L Sbjct: 153 NNPWFPSLQLFPNGIEELIYNVDTIGCDFRHVLVENTCGPAQPLTLDMLKQTGLTICVL- 211 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 GPEGG+ +E L F++ L+LG R+LR +TAA+ + L Sbjct: 212 GPEGGFTHKEILKLKEASFLS-LTLGDRVLRWETAAILCLGL 252 >gi|332298871|ref|YP_004440793.1| Ribosomal RNA small subunit methyltransferase E [Treponema brennaborense DSM 12168] gi|332181974|gb|AEE17662.1| Ribosomal RNA small subunit methyltransferase E [Treponema brennaborense DSM 12168] Length = 286 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 100/274 (36%), Gaps = 40/274 (14%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ + + +G + YL +VLR++ D + + +++ V + Sbjct: 1 MRQFIAPSEPDPRGRITVTGKDFRYLRNVLRLQPDDTLDVRLSGGELCRMRVAEVKAAGS 60 Query: 67 FKVEYQSRSQTK----------------------QSDVQYIFSPIKTNRLDYMIQKSVEM 104 V + ++++ ++ + K ++D +++++ E Sbjct: 61 ALVLERCGARSEGARATAETGVPAGAIEGADGGVRAPLWLFQFMPKAQKMDLIVRQAAET 120 Query: 105 GMGAIRPVITRYTQNTH--YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN 162 G+ I PV +Q + +R + A +Q + P L+ L+ W Sbjct: 121 GVAVIVPVRGARSQKSDCIERRERWQRIVREARQQSGSPVETTVAEPLDLDGALRLWSGR 180 Query: 163 -----CQIVFADETCGSEN----------SLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 C + +E+ G S A A+ +G EGG +E + Sbjct: 181 CGARPCAVALYEESAGCLPLHSCAARMCASGTSEKPTAPCTAAALAVGCEGGLSPDEIDV 240 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 L F P+ ILR++TAA+ +A +Q I Sbjct: 241 LQRAGFA-PVHFDTNILRTETAALYGIAALQTIL 273 >gi|294670651|ref|ZP_06735527.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307621|gb|EFE48864.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 14/149 (9%) Query: 103 EMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 E+G+ I PV + + + + R + ISA EQ T+P + P L Sbjct: 2 ELGVNEIIPVESARSVVKLSGERAEKRVSRWQEIVISACEQSGRNTVPAVRPLLPFRRAL 61 Query: 157 KNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVT 215 +N D +++ S N +L+++ +V ++GPEGG+ EE+ F Sbjct: 62 QNLPDAEAKLLM------SLNRSCRLNSLPPPRSVVFMVGPEGGWTEEEERFAQEAGF-Q 114 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDW 244 +SLG R+LR++T A+AA+A +Q + GD+ Sbjct: 115 AVSLGRRVLRTETTALAAIAAMQTLWGDF 143 >gi|297160570|gb|ADI10282.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 12/218 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--R 74 + + G + + V R++ G+ ++L +G ++ V R VE Sbjct: 15 AVGARLALEGPEGRHAVSVRRLRVGEPVVLTDGAGTGAFGAVAAVEGKDRLLVEVAEVRH 74 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 + + + K +R + ++ E G+ AI P + + + R Sbjct: 75 EAPPSPRITVVQALPKGDRGELAVETMTETGVDAIVPWAAARCVTQWKGERGLKALGKWR 134 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A +Q L P + T + + + E + L A Sbjct: 135 ATAREAGKQSRRLLFPEVMDAMTTRQVARLLAESDFAAVLHEEGAEPLATAPLPA---EG 191 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 +V +++GPEGG EE P LGP +LR+ Sbjct: 192 SVVLVVGPEGGVSPEELAAFAEAG-ARPYRLGPTVLRT 228 >gi|281200678|gb|EFA74896.1| hypothetical protein PPL_11930 [Polysphondylium pallidum PN500] Length = 275 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 117/252 (46%), Gaps = 30/252 (11%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L+R FV+ PL ++ + G Q+ +L LR+KEG + LF+G + ++ I +GK+ Sbjct: 4 LRRFFVENIPLMLRGSVRLDGSQHLHLKKSLRLKEGQEVELFDG-NQSVIAVIDSIGKNH 62 Query: 66 RFKVEYQSRSQTKQSDVQYIF--------SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + T +D Q+ F S K +R D+M++K E+ + ++ + T Y+ Sbjct: 63 SDLIISKINESTSSADNQHTFDSRIDIASSLPKASRGDWMVEKLTELDVRSLYLIETDYS 122 Query: 118 QNTHY------NMDRVRTYTISAAEQCDIL-----TLPFIYPPT--TLEFLLKNWDHNCQ 164 +++ DR + I AA+Q I+ T + PT L L++ + + Sbjct: 123 KSSKSSNITDNKFDRYQRIIIEAAKQSKIVKDNLWTHIIVGHPTGQPLPQLIEKFKTDY- 181 Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 + + + NS+E L P + +++G EGG+ E L L V P + G IL Sbjct: 182 -IKNNNDNNNNNSVESLSIPKVSPRLLVMVGSEGGFTENEINKLSKLSNVYPTNFGNSIL 240 Query: 225 RSDT-----AAV 231 R +T A + Sbjct: 241 RMETFSLLSAGI 252 >gi|323452130|gb|EGB08005.1| hypothetical protein AURANDRAFT_14390 [Aureococcus anophagefferens] Length = 223 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 10/213 (4%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQS 80 S Q+ Y+A V+R++EGD + F GEW + + + V+ + + Sbjct: 1 LSPAQHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDETP 60 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQC 138 + F+P++ R +I+K+VE+G + PV T + + + AAEQC Sbjct: 61 RLDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQC 120 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG-SENSLEKLHAIAHIPNVAILIGPE 197 + L +P + L L + V A+ G S L+ L A+L+GPE Sbjct: 121 ERLRVPVVEDVVDLASPLGDLP---LFVCAERADGASPRLLDALLGAELGDGAALLVGPE 177 Query: 198 GGYHSEEKETLHS-LPFVTPLSLGPRILRSDTA 229 GG+ + + + P T +SLG ILR++TA Sbjct: 178 GGFSDADLAAVRASNPDATFVSLGAGILRAETA 210 >gi|157413088|ref|YP_001483954.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9215] gi|157387663|gb|ABV50368.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT 9215] Length = 257 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 15/238 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQ 76 + + ++ HYL V+R+K G I + NG+ W + V ++ + Q Sbjct: 19 NNNIELTNEEAHYLNKVMRIKNGKEIFIANGEGSLWKA--IKVNNDCLEIIQLKKPYLFQ 76 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----YNMDRVRTYTI 132 K+ + I I + + +++ E+G+ I+P+ + N + + R Sbjct: 77 EKEIYLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNAIIK 136 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSENSLEKLHAIAHIPN 189 A EQ + L P+I + LK+ D+ + + + N + H Sbjct: 137 EAVEQSERLWKPYILNGMDIIEWLKSRDNQESVSISITRENPRYYLNQWLREHQEFINKK 196 Query: 190 VAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 I IGPEGG+ S+E + + T + L ILR+ TA++ A +++ D+ Sbjct: 197 GGIFWNVIGPEGGWSSKEIDFFNKNNN-TFVKLSETILRTSTASINASSILNQWRIDF 253 >gi|297194445|ref|ZP_06911843.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197718746|gb|EDY62654.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 248 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 12/218 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--R 74 G + + V R++ G++I+L +G + R VE + + Sbjct: 16 APGATVTLDGPEGRHAVSVRRLQPGEDIVLTDGGGRGASGTVVTTEGKDRLTVEVRECRK 75 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHYNMDRVR 128 + + + + K +R + ++ E G+ A+ P + ++ + R Sbjct: 76 EPQPEPRITVVQALPKGDRGELAVETMTETGVDAVVPWSAARCITQWRGERGAKSLAKWR 135 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A +Q L P + T + + E + Sbjct: 136 ATAREAGKQSRRLRFPEVSEAATTKQVAALLADADFAAVLHEEGA---LPLATAELPTAG 192 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 ++ +++GPEGG EE P LG +LR+ Sbjct: 193 SIVLVVGPEGGVSPEELALFAEAG-ARPYRLGRSVLRT 229 >gi|170289238|ref|YP_001739476.1| hypothetical protein TRQ2_1449 [Thermotoga sp. RQ2] gi|170176741|gb|ACB09793.1| protein of unknown function DUF558 [Thermotoga sp. RQ2] Length = 222 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 20/233 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + LF + + H++ V+R+KEGD I +GK + + + K Sbjct: 1 MPHLFYGT--AQNGEVIFDEREAHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKTA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + K+ + + R ++I+K VE+G+ I +Q ++ Sbjct: 58 AARIVKAEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISL 116 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 D+ + AA+QC P + L+ + + ++ D S+N L+ Sbjct: 117 DKAKIVVREAAKQCKRYLFPKVS-------FLEKLEFSGNVITLD-LDASQNLLDANLE- 167 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ +++GPEGG+ +E+E L S T +SLG +ILR +TAA+ + + Sbjct: 168 ---GSITVVVGPEGGFSEKERELLRSS--TTIVSLGKKILRFETAAILTVGYI 215 >gi|309811068|ref|ZP_07704866.1| RNA methyltransferase, RsmE family [Dermacoccus sp. Ellin185] gi|308435032|gb|EFP58866.1| RNA methyltransferase, RsmE family [Dermacoccus sp. Ellin185] Length = 252 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 86/238 (36%), Gaps = 22/238 (9%) Query: 10 LFVDF-----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63 FV + +GD+ + V RM G+ ILL +G + ++ K Sbjct: 6 YFVAPGALSDDIPPGAPVVLAGDEGRHAVTVKRMGVGEQILLADGHGLVAHAVVAETTKG 65 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 + V +R + + K +R ++ + E+G+ A+ P + Sbjct: 66 ELTAHVREVTRETPPAVTFTLVQALAKGDRDLQAVEAATELGVDAVVPWQAERSIVQWRG 125 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETC 172 + + +A +Q T P I T + + +V ++ Sbjct: 126 ERAEKARRKWVAQAEAATKQSRRATPPRISDLVTKNAAAQAISATVAEGGLALVLHEDAE 185 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 S +E + +V +++GPEGG E + + TP+ +G +LRS +A Sbjct: 186 ASLAQVE----LPSAGDVMLVVGPEGGITPAELDAFVAAG-ATPVRMGATVLRSSSAG 238 >gi|145296244|ref|YP_001139065.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum R] gi|140846164|dbj|BAF55163.1| hypothetical protein [Corynebacterium glutamicum R] Length = 241 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 16/243 (6%) Query: 11 FV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67 F+ D + +G + + V R++ G+ I L +G+ ++ + + Sbjct: 6 FISDSAAGPGETIELAGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDHLNA 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122 V+ V + + K+ R + I + G I Sbjct: 66 VVDLVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKL 181 ++ + + +AA+Q T+P I E + K D + I+ +E + LE Sbjct: 126 SLAKWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE-- 183 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 NV ++IGPEGG E T + LGP +LR+ +A + A+A + + Sbjct: 184 ----FSGNVVVIIGPEGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLS 238 Query: 242 GDW 244 W Sbjct: 239 DRW 241 >gi|50842401|ref|YP_055628.1| hypothetical protein PPA0917 [Propionibacterium acnes KPA171202] gi|282854139|ref|ZP_06263476.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139] gi|50840003|gb|AAT82670.1| conserved protein DUF558 [Propionibacterium acnes KPA171202] gi|282583592|gb|EFB88972.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139] gi|314923116|gb|EFS86947.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL001PA1] gi|314966883|gb|EFT10982.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL082PA2] gi|314981227|gb|EFT25321.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL110PA3] gi|315091796|gb|EFT63772.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL110PA4] gi|315093196|gb|EFT65172.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL060PA1] gi|315103299|gb|EFT75275.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL050PA2] gi|315105505|gb|EFT77481.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL030PA1] gi|327327708|gb|EGE69484.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL103PA1] Length = 246 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75 + + +G + H+ V R++ G+++L+ +G+ I S+ + + Sbjct: 14 VPGSVVEITGAEGHHAGSVRRIRVGESVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129 + + K++R + + EMG+ I R ++ + R + Sbjct: 74 PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A +Q +P + T E + + + V + SE + + Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLHE--SASEPLVH--QELPASGE 189 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V ++GPEGG S+E E + P+++ +LR+ TA V +A ++A Sbjct: 190 VIFIVGPEGGITSQEVEAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238 >gi|19553487|ref|NP_601489.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum ATCC 13032] gi|62391130|ref|YP_226532.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium glutamicum ATCC 13032] gi|21325060|dbj|BAB99682.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032] gi|41326469|emb|CAF20631.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length = 241 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 15/240 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVE 70 D + +G + + V R++ G+ I L +G+ ++ + + V+ Sbjct: 9 DSAAGPGETIELAGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDRLNAVVD 68 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMD 125 V + + K+ R + I + G I ++ Sbjct: 69 LVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAKSLA 128 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAI 184 + + +AA+Q T+P I E + K D + I+ +E + LE Sbjct: 129 KWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE----- 183 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 NV ++IGPEGG E T + LGP +LR+ +A + A+A + + W Sbjct: 184 -FSGNVVVIIGPEGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLSDRW 241 >gi|326773557|ref|ZP_08232840.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505] gi|326636787|gb|EGE37690.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505] Length = 270 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 95/246 (38%), Gaps = 21/246 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQS 73 T +G + + V R++ + + L +G + +++ G + +V + Sbjct: 25 GTVLMLTGPEARHAVTVKRLRAQERVDLVDGAGLRLVCEVTGAGVGGAKDRLAVRVLERV 84 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRV 127 + + + K R + ++ + E+G+G + P + R Sbjct: 85 EEPEPSLRLTLVQALAKGGRDEQAVETATEVGVGLVLPWQSERCVSVWQGAKQAKGRQRW 144 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGSENSLE--- 179 + + AA+Q +P + L+ + +V +E ++ Sbjct: 145 QATALQAAKQARRARVPEVEEVRDTRRLVDWVGQTVRGGGVVLVLHEEASTPISTAMESV 204 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +L A P +A+++GPEGG EE L + T + LGP ++R+ +A A+A++ Sbjct: 205 RLPAPGEAPRALAVVVGPEGGISPEETAALETAG-ATTVRLGPHVMRTASAGPVALAVLA 263 Query: 239 AICGDW 244 G W Sbjct: 264 HASGLW 269 >gi|123965976|ref|YP_001011057.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9515] gi|123200342|gb|ABM71950.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. MIT 9515] Length = 259 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 14/248 (5%) Query: 9 RLFVDFPLCIKTQ---GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 RL + I + K + ++ HYL V+R+K G I + NG+ W +K Sbjct: 6 RLLIQNERIIGNKNKNLKLTKEEAHYLNKVMRIKIGREIFITNGQGSLWKAKKLEQNFLE 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH---- 121 ++ Q K+ I + N + +++ E+G+ I+P+ + + Sbjct: 66 INNIDNPYFVQEKEKVSLGIAVVVPKNGFEDILKMCTEIGIDLIQPLFSERQVKNNSNFL 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSEN-- 176 R + A EQ + L P I L + + D I + D++ + N Sbjct: 126 KRNIRWNSIINEAVEQSERLWRPLILGGVNLIDWIDSRDSKDIISISITRDDSSENLNHW 185 Query: 177 SLEKLHAIAHIPNVAI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 K + + V ++GPEGG+ E E ++ + L ILR+ TA V A + Sbjct: 186 LKRKQNLLKKNGGVLWNVVGPEGGWSRNEIEFFLKNK-ISFVKLSETILRTSTATVNATS 244 Query: 236 LVQAICGD 243 ++ D Sbjct: 245 ILNQWRND 252 >gi|328882378|emb|CCA55617.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 9/223 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFK 68 FV + G + + V R++EG+ ++L +G + + + Sbjct: 6 FVVDAVPGPGSFLLDGPEGRHAVSVKRLREGEELVLADGGGRWAACVVLAAEGKDQLTVR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V+ ++ + + + K +R + ++ E G+ AI P Sbjct: 66 VDEVHEDPAEEPRITVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGDRGLK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + R+ A +Q P + P T + + E + Sbjct: 126 ALAKWRSTAREAGKQSRRSRFPEVAEPMTTKQVAALLAGADFAAVLHEDRDHPSGALATA 185 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + +++GPEGG EE + P LG +LR Sbjct: 186 ELPAKGAIVLVVGPEGGVSPEELAVFEAAG-AKPYRLGRSVLR 227 >gi|269794664|ref|YP_003314119.1| hypothetical protein Sked_13450 [Sanguibacter keddieii DSM 10542] gi|269096849|gb|ACZ21285.1| conserved hypothetical protein TIGR00046 [Sanguibacter keddieii DSM 10542] Length = 257 Score = 158 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 14/242 (5%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSR 74 L G + + V R G+ I + +G +++ V + +V + Sbjct: 16 LTQGDTYVLDGLEGRHAGVVQRRGVGERIDVVDGAGLRLTCRVTAVQAAEVTLEVVESVQ 75 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 T V + + K +R + I+ + E G+ A+ P + + R Sbjct: 76 ESTDGVSVVLVQALAKGDRDELAIEAATEAGVDAVLPWQAERSVVVWRGDRAAKSRARWV 135 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-- 186 +A +Q +LP + + L E +L Sbjct: 136 ATVRAATKQARRASLPGVGEVVDAKGLAARTAQVVASGGVVVVLHEEATLPIAQVPLPAR 195 Query: 187 ----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + V +++GPEGG E L T LGP +LR+ TA A+AL+ G Sbjct: 196 TGDAVAEVLVVVGPEGGISDRECTLLTEAG-ATLARLGPHVLRTSTAGPIAVALLSERLG 254 Query: 243 DW 244 W Sbjct: 255 RW 256 >gi|220904439|ref|YP_002479751.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868738|gb|ACL49073.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 252 Score = 158 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 6/231 (2%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 F P + + +L+ VLR+ G+ + L +G+ + + GK ++ + Sbjct: 5 FFYLAPEKWAKEVCLEDQEARHLSQVLRLGPGNEVGLLDGRGRKGRFIVRKAGKKNVQLE 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDR 126 + R ++ + K R + ++K+VE+G I ++Q + Sbjct: 65 CISEERLPLPEARAIIALAFSKAVRRGFFMEKAVELGAHGIWLWQGDHSQGKLSAAAEEA 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 ++ A+QC LP I ++ L + E + L A Sbjct: 125 CHGQLVAGAKQCGNPWLPEIRGLANGVDELATLAAGADHRILPWEAQDNVPMLTPALAGQ 184 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +V +IGPEGG+ S E + L FV +SLG R+LR +TAA + L Sbjct: 185 PGLSV-YVIGPEGGFSSRELDMLKRSGFV-AVSLGARVLRCETAATLCLGL 233 >gi|220912725|ref|YP_002488034.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter chlorophenolicus A6] gi|219859603|gb|ACL39945.1| protein of unknown function DUF558 [Arthrobacter chlorophenolicus A6] Length = 257 Score = 158 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 12/240 (5%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSR 74 L + G + + V R+ G+ + + +G ++ G + + Sbjct: 16 LEEGMEFVLEGPEARHAVAVKRLAAGEAVDIVDGAGTRMSGTVAEAAGTRLTVRCGTLVE 75 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 + + + + K +R + I+ S E+G+ A+ P + + + + Sbjct: 76 EARPRVRLVLVQALAKGDRDELAIETSTELGIDAVIPWQSERSIVRWKGDRAAKAHGKWQ 135 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAH 186 + +AA+Q +P + L + + E LE + Sbjct: 136 SVVGAAAKQARRAWIPEVRSAVDTAALAAAVETADLAIILHEDAVRPLRAVLEGWEGASG 195 Query: 187 IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E L VT L LG +LRS TA AA+ L I G W Sbjct: 196 TGTREVLLIVGPEGGISPREVTRLCDRGAVTAL-LGHHVLRSSTAGPAAVVLSSDILGRW 254 >gi|15644132|ref|NP_229181.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga maritima MSB8] gi|4981941|gb|AAD36450.1|AE001791_12 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 222 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 20/233 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + LF + + H++ V+R+KEGD I +G + + + K Sbjct: 1 MPHLFYGT--AQNGEVIFDEREAHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + + K+ + + R ++I+K VE+G+ I +Q ++ Sbjct: 58 AAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISL 116 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 D+ + AA+QC P + L+ + + ++ D S+N L+ Sbjct: 117 DKAKIVVREAAKQCKRYLFPKVS-------FLEKLEFSGNVITLD-LDASQNLLDANLE- 167 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ +++GPEGG+ +E+E L S T +SLG +ILR +TAA+ + + Sbjct: 168 ---GSITVVVGPEGGFSEKERELLRSS--TTIVSLGKKILRFETAAILTVGYI 215 >gi|293363228|ref|ZP_06610112.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2] gi|292553087|gb|EFF41836.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2] Length = 230 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 21/239 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F + + + +LA V+R++ + N + +L ++ ++ Sbjct: 1 MNRFF-ATSQINENYFELDKETLKHLA-VIRIE--QKPFIINYLEKFYLCRLE---NNLA 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QN 119 +E + +V S IK R +++IQK++E+G I P+I+++T Sbjct: 54 KIIEPLDINNELGYEVILAASIIKIERYEWLIQKAIELGATKIVPIISKHTDGSIYKHDK 113 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 DR T SA EQ L + P + + + + A E L+ Sbjct: 114 FAKKYDRFNTIIKSATEQSFRNKLITLDPIMDYKKAIYKYKYINNKYIAHEI-----DLQ 168 Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 K + I + V +GPEGGY E + + + LG RILR++TA++ ++ + Sbjct: 169 KTSKLDKIKSDVIFFVGPEGGYDQSEIDYALENNY-KCIYLGKRILRAETASIYLLSQL 226 >gi|33861225|ref|NP_892786.1| hypothetical protein PMM0668 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639957|emb|CAE19127.1| Conserved hypothetical protein 46 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 257 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 16/251 (6%) Query: 7 LKRLFVDFPLCIKTQ---GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 L RLF+ I + K + ++ Y+ V+R+K G I + NG+ W + I+ Sbjct: 4 LTRLFMQNERIINNKNNDLKLTNNEARYINKVMRIKIGKEIFITNGEGSLWKA-INLEDN 62 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120 I+ ++ + + I N ++ +++ E+G+ I+P+ + Sbjct: 63 YIKINDINNPYLFQEKEKILLGIAVVIPKNGVEDILKMCTEIGIDFIQPLYSDRQVKKYT 122 Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSE 175 + R + A EQC+ L P I L + + ++ I V D++ + Sbjct: 123 NFSNKLIRWNSIVNEAVEQCERLWRPSILSGINLFDWINSLENKDIISVSVTRDDSTDNL 182 Query: 176 NS-LEKLHAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 N L+K ++ + +IGPEGG+ E E + + L ILR+ TA V Sbjct: 183 NHWLKKKQSVLDKKGGVLWNVIGPEGGWSQGEIEFFIKNK-IAFVKLSESILRTSTATVN 241 Query: 233 AMALVQAICGD 243 A +++ D Sbjct: 242 ATSILSQWRND 252 >gi|172041014|ref|YP_001800728.1| hypothetical protein cur_1334 [Corynebacterium urealyticum DSM 7109] gi|171852318|emb|CAQ05294.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 245 Score = 158 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 21/243 (8%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 + + + + +G + + + V R+ +G+ +++ +G S G V Sbjct: 6 LPQGVAVGDSVQLTGAEARH-SQVKRIADGEAVIVSDGAATAVRGTFSSAG----VHVSE 60 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDR 126 V + + K++R + + V+ G I P I R+ + + R Sbjct: 61 LLELPQPSPRVTIVQALPKSDRSELAVDLMVQAGADRIIPWAASRCIARWDKKEDKALAR 120 Query: 127 VRTYTISAAEQCDILTLPFI--------YPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 +A +Q L LP I P + L + ++ GS + Sbjct: 121 WEKTAFAATKQSRRLVLPEITGLLRNLTDLPKLVPGLASPASTARLGMLHEDARGSFRTF 180 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + A + ++ ++IGPEGG EE TL L + + LGP +LR+ TA A+ + Sbjct: 181 --VEGAADVEDIVLVIGPEGGIAPEELATLEELGGQSVV-LGPEVLRTATAGAVALGAIG 237 Query: 239 AIC 241 A+ Sbjct: 238 ALT 240 >gi|33240474|ref|NP_875416.1| hypothetical protein Pro1024 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238002|gb|AAQ00069.1| Uncharacterized conserved protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 254 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 24/253 (9%) Query: 4 HSHLKRLFVDFPLCIKTQ------GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57 + L+RL +D PL I +G + HYLA VLR++ GD+I + +G W + Sbjct: 1 MAELRRLLID-PLRINKSSLNNNIIDLTGQESHYLARVLRLRYGDHINIVDGVGHLWTA- 58 Query: 58 ISYVGKSIRFKVEYQSRSQT----KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113 ++ + + S + K + K + D +++ S E+G+ ++P+I Sbjct: 59 -DFIKEDLIKLHSDLSNPEVTESKKNPLICLAVVVPKQD-FDDILRMSTEIGIDVLQPII 116 Query: 114 TRYTQNTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--- 167 + + ++ + R + A EQ + L P + + + + + Sbjct: 117 SDRSVVRNFQSERVKRWDSIINEAVEQSEQLWKPKLKEIICFNEWIDIYRKSTLMALGTT 176 Query: 168 -ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 D E+ L + + + I IGPEGG+ + E + L IL++ Sbjct: 177 RIDNAIPFESLLNDIKD--DLNQICIAIGPEGGWSNHEIFLAREKECAN-VLLADTILKN 233 Query: 227 DTAAVAAMALVQA 239 TAA+ A ++ + Sbjct: 234 TTAAIVATQIMSS 246 >gi|215427748|ref|ZP_03425667.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T92] gi|289750971|ref|ZP_06510349.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691558|gb|EFD58987.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 236 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 17/236 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD GD+ + A V R++ G+ ++L +G + G+ +R + Sbjct: 6 FYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K+ R + I+ + E G A Sbjct: 66 VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177 + R R SAA Q +P + + L++ +V +E Sbjct: 126 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + A A ++ +++GPEGG +E L V + LGP +LR+ TAA A Sbjct: 186 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTSTAAAVA 236 >gi|254819390|ref|ZP_05224391.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium intracellulare ATCC 13950] Length = 253 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 + D GD+ + A V R++ G+ ++L +G G ++ + G+ +R + Sbjct: 6 FYADALPETGALAVLGGDEGFHAASVRRIRPGEQLVLGDGAGGLARCEVEHAGRDGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + V + + K+ R + I+ + E G R V Sbjct: 66 VLKRWSVAPGTPPVTVVQALPKSERSELAIELATEAGADGFLAWRAARCVANWQGARVEK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179 + R R SAA Q +P + + L +++ V A +E Sbjct: 126 GLRRWRAVARSAARQSRRAHIPPVDGVLSTPALTSRIRDEVAGGATVLALHESATERLAH 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +A +V +++GPEGG +E L T + LGP++LR+ T Sbjct: 186 A--DLAGATSVFLVVGPEGGIADDEMAALSDAG-ATAVRLGPQVLRTST 231 >gi|289425193|ref|ZP_06426970.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK187] gi|289427156|ref|ZP_06428872.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J165] gi|295130479|ref|YP_003581142.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK137] gi|289154171|gb|EFD02859.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK187] gi|289159625|gb|EFD07813.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J165] gi|291376859|gb|ADE00714.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK137] gi|313764574|gb|EFS35938.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL013PA1] gi|313772386|gb|EFS38352.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL074PA1] gi|313792264|gb|EFS40365.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL110PA1] gi|313801786|gb|EFS43020.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL110PA2] gi|313807397|gb|EFS45884.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL087PA2] gi|313809905|gb|EFS47626.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL083PA1] gi|313813059|gb|EFS50773.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL025PA1] gi|313816115|gb|EFS53829.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL059PA1] gi|313818444|gb|EFS56158.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL046PA2] gi|313820207|gb|EFS57921.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL036PA1] gi|313822984|gb|EFS60698.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL036PA2] gi|313825087|gb|EFS62801.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL063PA1] gi|313827986|gb|EFS65700.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL063PA2] gi|313830236|gb|EFS67950.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL007PA1] gi|313834037|gb|EFS71751.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL056PA1] gi|313838614|gb|EFS76328.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL086PA1] gi|314915571|gb|EFS79402.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL005PA4] gi|314918475|gb|EFS82306.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL050PA1] gi|314919963|gb|EFS83794.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL050PA3] gi|314925435|gb|EFS89266.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL036PA3] gi|314955845|gb|EFT00245.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL027PA1] gi|314958326|gb|EFT02429.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL002PA1] gi|314960119|gb|EFT04221.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL002PA2] gi|314962925|gb|EFT07025.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL082PA1] gi|314968001|gb|EFT12100.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL037PA1] gi|314973242|gb|EFT17338.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL053PA1] gi|314975917|gb|EFT20012.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL045PA1] gi|314978325|gb|EFT22419.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL072PA2] gi|314984065|gb|EFT28157.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL005PA1] gi|314987769|gb|EFT31860.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL005PA2] gi|314990048|gb|EFT34139.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL005PA3] gi|315078139|gb|EFT50190.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL053PA2] gi|315080767|gb|EFT52743.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL078PA1] gi|315084435|gb|EFT56411.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL027PA2] gi|315085775|gb|EFT57751.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL002PA3] gi|315088807|gb|EFT60783.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL072PA1] gi|315096154|gb|EFT68130.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL038PA1] gi|315098417|gb|EFT70393.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL059PA2] gi|315101227|gb|EFT73203.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL046PA1] gi|315108450|gb|EFT80426.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL030PA2] gi|327326071|gb|EGE67861.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL096PA2] gi|327332057|gb|EGE73794.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL096PA3] gi|327443260|gb|EGE89914.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL013PA2] gi|327446047|gb|EGE92701.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL043PA2] gi|327447973|gb|EGE94627.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL043PA1] gi|327450900|gb|EGE97554.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL087PA3] gi|327453021|gb|EGE99675.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL092PA1] gi|327453751|gb|EGF00406.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL083PA2] gi|328753588|gb|EGF67204.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL020PA1] gi|328754322|gb|EGF67938.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL087PA1] gi|328754427|gb|EGF68043.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL025PA2] gi|328760428|gb|EGF73996.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL099PA1] gi|332675317|gb|AEE72133.1| ribosomal RNA small subunit methyltransferase E [Propionibacterium acnes 266] Length = 246 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75 + + + + H+ V R++ G+ +L+ +G+ I S+ + + Sbjct: 14 VPGSVVEITDAEGHHAGSVRRIRVGETVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129 + + K++R + + EMG+ I R ++ + R + Sbjct: 74 PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A +Q +P + T E + + + V + SE + + Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLHE--SASEPLVH--QELPASGE 189 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V ++GPEGG S+E E + P+++ +LR+ TA V +A ++A Sbjct: 190 VIFIVGPEGGITSQEVEAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238 >gi|313837294|gb|EFS75008.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL037PA2] gi|314928032|gb|EFS91863.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL044PA1] gi|314971790|gb|EFT15888.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL037PA3] gi|328907156|gb|EGG26922.1| RNA methyltransferase, RsmE family [Propionibacterium sp. P08] Length = 246 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75 + + +G + H+ V R++ G+++ + +G+ I S+ +V + Sbjct: 14 APGSVVEITGAEGHHAGSVRRIRVGESVFVTDGQGHAVRGPAIEVTKGSVNVEVVEILET 73 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129 + + K++R + + EMG+ I R ++ + + ++ Sbjct: 74 PATAHWWVAVQALPKSDRAELAVATLTEMGVHEILAWQAGRSIVRWKGDKQAKGVAKWQS 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A +Q +P + T E + + + + +E + + Sbjct: 134 AAREATKQSRRFRIPQVELAQTREVVERIRSAEAAYILHE--TATEPLVH--QELPAFGE 189 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V ++GPEGG +E + + P+++ +LR+ TA V +A ++A Sbjct: 190 VIFIVGPEGGITDQEVDAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238 >gi|25028744|ref|NP_738798.1| hypothetical protein CE2188 [Corynebacterium efficiens YS-314] gi|259507805|ref|ZP_05750705.1| RsmE family RNA methyltransferase [Corynebacterium efficiens YS-314] gi|23494030|dbj|BAC18998.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164598|gb|EEW49152.1| RsmE family RNA methyltransferase [Corynebacterium efficiens YS-314] Length = 241 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 94/245 (38%), Gaps = 20/245 (8%) Query: 11 FV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRF 67 F+ D +G + + V R+ G+ ++L +G +++ V + Sbjct: 6 FISDTVAAAGEHVTVTGPEGRHAVTVKRITPGERVMLIDGHGTARTCQVTAVSGRDRMDV 65 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122 VE V + + K+ R + + + G I ++ T Sbjct: 66 VVESVEEIPPPDPRVTIVQAIPKSERSELTVDLLTQAGADRIVAWQSQRTIAKWAGKEAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLE 179 ++ + + +AA+Q T+P + ++ L++ D I+ +E + Sbjct: 126 SLTKWQAAAEAAAKQSRRATIPEVVGVVDTAGVDKLIEEAD--LAIILHEEAS------Q 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +V ++IGPEGG EE + T + LGP +LR+ +A + A+A + Sbjct: 178 PFRELNFTGDVVVIIGPEGGVSPEEIHRFTAAGAHT-VKLGPEVLRTASAGMVALAAIGV 236 Query: 240 ICGDW 244 + W Sbjct: 237 LSNRW 241 >gi|302545472|ref|ZP_07297814.1| RsmE family RNA methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302463090|gb|EFL26183.1| RsmE family RNA methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 289 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 17/228 (7%) Query: 11 FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 FV L + G + + V R++ G+ ++L +G ++ V R Sbjct: 48 FVADSLAGAATGARIALEGPEGRHAVSVKRLRAGEAVILTDGAGTGVSGTVAAVEGKDRL 107 Query: 68 KVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 VE + + + K +R + ++ E G+ AI P + Sbjct: 108 LVEVDGVRHEAAPSPRITVVQALPKGDRGEVAVETMTETGVDAIVPWTAARCITQWKGER 167 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178 + + R+ A +Q L P + T + + + D + V +E + Sbjct: 168 GQKALGKWRSTAREAGKQSRRLIFPEVADAMTTKEVARLLADADLAAVLHEEGSDPLATA 227 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + H ++ +++GPEGG EE + P LGP +LR+ Sbjct: 228 Q----LPHEGHIVLVVGPEGGVSPEELAAFAAAGG-RPYRLGPSVLRT 270 >gi|284030358|ref|YP_003380289.1| hypothetical protein Kfla_2416 [Kribbella flavida DSM 17836] gi|283809651|gb|ADB31490.1| protein of unknown function DUF558 [Kribbella flavida DSM 17836] Length = 245 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 80/219 (36%), Gaps = 16/219 (7%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ 76 + G + + A V R+ G+ + L +G+ + KS + V+ ++ Sbjct: 19 AGDELTLDGPEGRHAAVVRRIGMGERLRLTDGRGSFAEGAVVAASKSGVTVAVDRRAEVP 78 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 + + + K R + ++ E+G I P + + + + R + Sbjct: 79 PPAPRLVVVQALPKGERAELAVEMLTEIGADLIVPWNADRSQFRANPERVEKTLTKWRAW 138 Query: 131 TISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A++Q + P + +E V +E L+ + + Sbjct: 139 AFEASKQSRRSWFCEVAPVASTVEVAALVAGAGLAAVLHEEAKAPLAGLD----VPATGD 194 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +++GPEGG E ++L P+ LG +LR+ T Sbjct: 195 LVVVVGPEGGITPAELDSL----GAEPVLLGDTVLRTST 229 >gi|294786868|ref|ZP_06752122.1| RNA methyltransferase, RsmE family [Parascardovia denticolens F0305] gi|315226504|ref|ZP_07868292.1| RsmE family RNA methyltransferase [Parascardovia denticolens DSM 10105] gi|294485701|gb|EFG33335.1| RNA methyltransferase, RsmE family [Parascardovia denticolens F0305] gi|315120636|gb|EFT83768.1| RsmE family RNA methyltransferase [Parascardovia denticolens DSM 10105] Length = 290 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 29/260 (11%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 F L + +R+ +GD +LL +G+ + ++I+ ++ VE Sbjct: 31 FSRDSLSEGMTFLLPASVRRHAVKAMRLGQGDGLLLSDGRGLKVQARITD-PQAGAVMVE 89 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNM 124 + I + K+ R + I+ + E+G+ + P + + Sbjct: 90 KIGLEPAPAVKLGLIQALAKSGRDEQAIEMATEIGVDRVIPWQAQRSIVLWKGSKAGKGR 149 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGSENSLE 179 ++ R I+A EQ LP + P + L + IV + S S+ Sbjct: 150 EKWRDQLIAATEQSRRSWLPQLDPVMNSKQLAAWISQVVGFGDTVIVLHQDASESWGSIS 209 Query: 180 KLHAIA----------------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 A P + +++GPEGG EE L +G I Sbjct: 210 DRLAEKYRMAIETAGQGETRGEEAPTIFVIVGPEGGISDEEIGLFKEAGATLAL-IGRNI 268 Query: 224 LRSDTAAVAAMALVQAICGD 243 LR+ +A A+ L+ I G Sbjct: 269 LRASSAGPVALTLLTRIIGR 288 >gi|308811582|ref|XP_003083099.1| unnamed protein product [Ostreococcus tauri] gi|116054977|emb|CAL57054.1| unnamed protein product [Ostreococcus tauri] Length = 317 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 98/257 (38%), Gaps = 38/257 (14%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + S L R +VD L T + S ++ + A LR++ G + + +G + + V Sbjct: 39 RRPSTLHRFYVDEELRANTTTRLSREETRHAAKALRLRPGVAVEVCDGVGRLARATLGDV 98 Query: 62 ------GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 +V+ RS DV F+ +K R D++++K E+G + P++ Sbjct: 99 LDGRFVVDVEDVRVDVDGRSSGIDWDVVCAFAGLKGGRGDWLVEKCAELGARRLVPLLAS 158 Query: 116 YTQNTHYNMD------------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163 ++ + R +A++Q + T +E L + Sbjct: 159 RSERRSTRGEDGEGDARRGRAGRWDRVARAASKQSLRARELAVGETTDVEALCRE----- 213 Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVA------------ILIGPEGGYHSEEKETLHSL 211 + + G+ +L L A + +VA +++GPEG + EE + Sbjct: 214 --MAREREVGTRVTLLALQGGAPVADVAREVGPRAMRAGRVVVGPEGDFTDEEVRAMIRA 271 Query: 212 PFVTPLSLGPRILRSDT 228 P+ LG LR +T Sbjct: 272 G-ARPIGLGTLRLRVET 287 >gi|302336696|ref|YP_003801902.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM 11293] gi|301633881|gb|ADK79308.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM 11293] Length = 272 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 98/264 (37%), Gaps = 36/264 (13%) Query: 9 RLFV----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--- 61 R FV + L + + ++ HYL VLR+ +G + + +L + Sbjct: 2 RTFVLDDSETKLASGKRFSPAPERAHYLLRVLRLSQGAVFPGQDSRGKRYLITLESETPC 61 Query: 62 -----------GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110 + + + + + +K ++D +I+++ E G I Sbjct: 62 TLSLRREEEASAREVEACFRELPEQGPDFPPIIFYQAILKGKKMDQVIRQATEAGADFII 121 Query: 111 PVITRYTQN------THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH--- 161 PV+T + R A +Q T + P +L+ ++++ Sbjct: 122 PVLTDRSVPQFTPGEAEKKQKRWEIIVREAIQQSG-ATGTTLLLPRSLKKVIEDPPMPRP 180 Query: 162 -----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP 216 ++ F + + + L I ++ +GPEGG+ +E E F P Sbjct: 181 QGGGREVKLFFHERPIANGSLHGYLSG--EISSITAAVGPEGGFSPKESEMFLQAGFC-P 237 Query: 217 LSLGPRILRSDTAAVAAMALVQAI 240 L ILR++TAA+ +A ++A+ Sbjct: 238 LFFSGNILRAETAAIYGLAAIRAL 261 >gi|49660071|gb|AAT68326.1| hypothetical protein At1g50000 [Arabidopsis thaliana] Length = 168 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 5/166 (3%) Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137 Q V F +K R D++I+K E+G ++ P++T + + +DR+ + +AA+Q Sbjct: 2 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 61 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L + PP LL + + + A T ++ L +++ A + +++GPE Sbjct: 62 CQRLHQMVLNPPIKFGTLLDHILKSKLCLVA--TAEAKPLLNAVNSSAKESSGLLIVGPE 119 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G + +E E + T + LGP LR +TA +A +A + + D Sbjct: 120 GDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLATL-VMWSD 163 >gi|281357011|ref|ZP_06243501.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] gi|281316569|gb|EFB00593.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] Length = 229 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 11/232 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + F + + + + +L LR GD + L +G+ G L+ + Sbjct: 1 MHSFFCNTLGKAGEPVELAKRESDHLFKTLRAAPGDTVELLDGRGGRALATVQP---GRV 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 + + ++ + + + + D +++++ E+G+ IR ++ + DR Sbjct: 58 LLTVSREQVPEPETGLLLYTAVPRKAKFDTLLKQAAELGVREIRLLLCERSVAAPEGSDR 117 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 T +Q LP I PP L L + A E G+E Sbjct: 118 WETLLQEGCKQSGNPFLPKIAPPVKLAAALAEFSGTGY-FGAVENPGAEAPRPA------ 170 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 NVA +GPEGG+ + +E + + L+LGP +LR +TAAV +A+++ Sbjct: 171 AGNVAWFVGPEGGFTAA-EEEAMAHANIHALNLGPYVLRLETAAVCGLAVLR 221 >gi|148270532|ref|YP_001244992.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga petrophila RKU-1] gi|281412840|ref|YP_003346919.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10] gi|147736076|gb|ABQ47416.1| protein of unknown function DUF558 [Thermotoga petrophila RKU-1] gi|281373943|gb|ADA67505.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10] Length = 222 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 20/233 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + LF + + H++ V+R+KEGD I +GK + + + K + Sbjct: 1 MPHLFYGT--AQNGEVIFDERETHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKVA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 ++ + K+S + + R ++I+K VE+G+ I +Q ++ Sbjct: 58 TARIVKAEEKEKKSAEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISL 116 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 D+ + +A+QC P + L+ + + ++ D + L + Sbjct: 117 DKTKIVVRESAKQCRRYLFPKVS-------FLEKLELSGNVITLDLDAS-----QNLLDV 164 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 ++ +++GPEGG+ +E+E L S T +SLG +ILR +TAA+ + + Sbjct: 165 NLEGSITVVVGPEGGFSEKERELLRSS--TTVVSLGKKILRFETAAILTVGYI 215 >gi|225850017|ref|YP_002730251.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) [Persephonella marina EX-H1] gi|225646741|gb|ACO04927.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) [Persephonella marina EX-H1] Length = 234 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 107/224 (47%), Gaps = 13/224 (5%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDV 82 + D+ + A V R+K GD I + + K +L+++ + K I+ ++ + + + + + Sbjct: 17 LTEDELKH-AKVKRVKTGDRIEINDLKGNVYLTEVLEITKRYIKCRIIEKIKVEEEDFRI 75 Query: 83 QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----DRVRTYTISAAEQ 137 +++D +I+ ++G+ PVI+ + ++ + +++ +Q Sbjct: 76 TLYQCMPNQLSKIDDIIEGVSQLGVYRFVPVISERSAVKTKDVLKKIKKWEKKALNSIKQ 135 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 C L I P LE + D + VF ++ + ++++ + NV+++IGPE Sbjct: 136 CKRLYPVIIENPVKLEDI--KSDDEGKFVFYEKE--EKRTVKEFLD-KKLKNVSVVIGPE 190 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 GG+ E + L F+ PL++G ILR +TA + + ++ + Sbjct: 191 GGFTEGEIKILQDKGFI-PLTMGKNILRMETAVITGICQIRFLF 233 >gi|218961073|ref|YP_001740848.1| hypothetical protein CLOAM0759 [Candidatus Cloacamonas acidaminovorans] gi|167729730|emb|CAO80642.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 233 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 6/209 (2%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65 + L++ K G+++H+L +V R G+ + L +G K++ + K S Sbjct: 1 MPSLYLPELSSDKKIIAVEGEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNSA 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123 ++ + F+ IK + +I+K E+G+ A P++T Y+ Sbjct: 61 VIEIIKIETFPFPERPFAIAFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVRIPSKNT 120 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R + ++A +QCD LP I P + + ++ I C + +K+ A Sbjct: 121 TQRFKRTALAAIKQCDNPWLPRINEPLSFKQAIEKIISEGWI---PVLCSEKRPAKKISA 177 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLP 212 + + +IGPEGG+ E + Sbjct: 178 LPNNIKPCFIIGPEGGFSEAEFAFFNEKN 206 >gi|218516761|ref|ZP_03513601.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli 8C-3] Length = 133 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 86/132 (65%), Gaps = 1/132 (0%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +A+ +Q++YLA+VLRM+ ILLFNG+DGEW + +S+ Sbjct: 1 MRANFRMQRLFVDAPLSAGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 K I Q R Q D+ Y+F+P+K R+DY++QK+VEMG G ++PV+T++ Q Sbjct: 61 PTRKRILLTAIEQMRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120 Query: 120 THYNMDRVRTYT 131 N+D++R Sbjct: 121 KITNLDKLRANV 132 >gi|254382699|ref|ZP_04998056.1| protein involving differentiation [Streptomyces sp. Mg1] gi|194341601|gb|EDX22567.1| protein involving differentiation [Streptomyces sp. Mg1] Length = 247 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 9/223 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFK 68 FV + + G + + V R+ G+ ++L +G+ G + + + Sbjct: 6 FVVEEVPAGPEFVLDGPEGRHAVSVKRLNPGEAVVLTDGRGGWAQAVVKAAEGKDRLVVA 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 V + + + K +R + ++ E G+ AI P Sbjct: 66 VSGVFTEAEPAVRITVVQALPKGDRGEVAVETMTETGVDAIVPWQASRCITQWRGDRGAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++ + R A +Q ++ P + + + + + E + + Sbjct: 126 SLAKWRGTAREAGKQSRRVSFPEVAEAMSTKQVAALLADADLAMVLHEDRDAPSQALATA 185 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + ++ +++GPEGG EE ++ P LG +LR Sbjct: 186 ELPAAGSIVLVVGPEGGVSPEELAAFAAVG-AHPYRLGRPVLR 227 >gi|260903866|ref|ZP_05912188.1| 16S ribosomal RNA methyltransferase RsmE [Brevibacterium linens BL2] Length = 248 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 8/238 (3%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FKVEYQ 72 D + V R+ GD + + +G ++ + +V Sbjct: 12 AEAAAGQVLTFGEDVAGHAVRVRRLGPGDELEVVDGAGTRVRGTVTSASANEMGLQVASV 71 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 + ++ ++ + + + K +R I+ + E+G+ + P + + + Sbjct: 72 THAEVERPRLVLVQALAKADRDLQAIEAATEIGVDEVVPWAAERSIADWPAKKRDKLAAK 131 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +A+ Q P + L + E + S A Sbjct: 132 WDNVLRAASLQARRARFPLRHDLVRGTGLAGALSEGDTVYVLHEAAELKLSQALSRFDAG 191 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +++GPEGG E E L ++ T + LGP +LRS +A A + + Q G W Sbjct: 192 SDRIVLVVGPEGGISDAELEALSAIGADT-VLLGPTVLRSSSAGAAGLVMAQNSLGRW 248 >gi|308235191|ref|ZP_07665928.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis ATCC 14018] gi|311114847|ref|YP_003986068.1| RsmE family RNA methyltransferase [Gardnerella vaginalis ATCC 14019] gi|310946341|gb|ADP39045.1| RsmE family RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 265 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 90/240 (37%), Gaps = 18/240 (7%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 + +R+ +GD++ L +GK + I+ ++ +V+ + + Sbjct: 27 TLSLPQHVKRHAISAMRLSDGDSLDLSDGKGVRIHATITD-SENGLVRVDSFIKEPAPTT 85 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NMD-RVRTYTISAAEQ 137 + I + KT + I + ++G+ + P + + D R +A EQ Sbjct: 86 RLTLIQALAKTGHDEQAIDMATQIGVDEVIPWCANRSISKWKPGRTDKRWNQVLEAATEQ 145 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGS--------ENSLEKLHAI 184 +P + P T + +L C +V + S + EK Sbjct: 146 SRRAWIPQLLEPVTSKQILAICRRACVYGSLVVVLHQDATDSFSQIENYVNDLTEKCLKD 205 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG EE ++ + + LG ILR+ TA ++L+ G + Sbjct: 206 GKTRTVYVVVGPEGGISEEEVQSFIDAGAKSCV-LGSNILRASTAGPVCLSLLSRALGRY 264 >gi|327330777|gb|EGE72523.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL097PA1] Length = 246 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 12/230 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75 + + + + H+ V R++ G+ +L+ +G+ I S+ + + Sbjct: 14 VPGSVVEITDAEGHHAGSVRRIRVGETVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129 + + K++R + + EMG+ I R ++ + R + Sbjct: 74 PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A +Q +P + T E + + + V SE + + Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLH--VSASEPLVH--QELPASGE 189 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V ++GPEGG ++E E + P+++ +LR+ TA V +A ++A Sbjct: 190 VIFIVGPEGGITTQEVEAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238 >gi|239941049|ref|ZP_04692986.1| 16S rRNA m3U1498 methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239987528|ref|ZP_04708192.1| 16S rRNA m3U1498 methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291444489|ref|ZP_06583879.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291347436|gb|EFE74340.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 248 Score = 155 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 10/225 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 FV + + G + + V R++ G++++L +G + R V Sbjct: 6 FVVERMPTGPEFVLEGPEGRHAVSVKRLQPGEDVVLTDGLGHWAEGVVHSAEGKDRLTVT 65 Query: 71 YQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + + + + K +R + ++ E G+ AI P Sbjct: 66 LHAGVQEEPEPRPRITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWKGDRGA 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + R+ A +Q + P + T + + E +++ Sbjct: 126 KALTKWRSTAREAGKQSRRVRFPEVADAMTTKQVAALLAGADFAGVLHEDRDHDSTPLAT 185 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + +++GPEGG +E P LG +LR+ Sbjct: 186 AELPAEGTIVLVVGPEGGVSPQELTAFAEAG-ARPYRLGRSVLRT 229 >gi|269114999|ref|YP_003302762.1| hypothetical protein MHO_2250 [Mycoplasma hominis] gi|268322624|emb|CAX37359.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 220 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 92/236 (38%), Gaps = 20/236 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F + S + + VLR + +NI++ N ++ + + + + Sbjct: 1 MYKFFANK--LEDGIFYFSDEIQKH-FKVLRFNK-ENIIV-NYENKFYECQFVFPNSAKL 55 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 K + + IK N + +QK+VE+G I ++Y ++ Sbjct: 56 VK--ELDINNELDYKLCVAIPLIKQNHFEIALQKAVELGAYEIYVFQSQYVDKSNLNFDS 113 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 R A +Q +P ++ P + L D +++ + +E Sbjct: 114 KKQRYEKIIFEACQQSFRNYIPRLHDPISFSELC-VLDIKNKVLAYENKKNNE------- 165 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I + I++GPEGG+ +E + S V +SL ILR++TA + ++ + Sbjct: 166 LIKDCQDALIIVGPEGGFSQQEIDYAISCN-VQVVSLTKTILRAETALIYMLSKLN 220 >gi|297243344|ref|ZP_06927277.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis AMD] gi|296888591|gb|EFH27330.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis AMD] Length = 265 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 91/240 (37%), Gaps = 18/240 (7%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 + +R+ EGD + L +GK +K++ V + +VE +R + + Sbjct: 27 TIALPSQVKRHAISAMRLLEGDALQLSDGKGLRIHAKVTDVENGL-VRVEAFTREAPRMT 85 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYTISAAEQ 137 + + + KT + I + ++G+ + P + + D R SA EQ Sbjct: 86 RLALVQALAKTGHDEQAIDMATQIGVDEVIPWCADRSIAKWKPGRTDKRWSQVLQSATEQ 145 Query: 138 CDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLEKL--------HAI 184 +P + + + ++ N IV + N +E+ Sbjct: 146 SRRAWMPELQECVSSKQIVAICRRACVYGNLVIVLHQDATDCWNQIEQAVNTLSERCLED 205 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + +L+GPEGG +E + + LG ILR+ TA A++L+ + G + Sbjct: 206 GKERTIYVLVGPEGGISDDEVSMFIDAGAKSCV-LGSNILRASTAGPVALSLLSRVLGRY 264 >gi|317153253|ref|YP_004121301.1| hypothetical protein Daes_1541 [Desulfovibrio aespoeensis Aspo-2] gi|316943504|gb|ADU62555.1| protein of unknown function DUF558 [Desulfovibrio aespoeensis Aspo-2] Length = 246 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 17/251 (6%) Query: 4 HSHLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L P + + SG + H++ VLR + LF+G L K+ Sbjct: 1 MARLNSFHHPAQGWPSAVGETVRFSGAEAHHMLAVLRTAPDQIVRLFDGLGRVGLFKVQK 60 Query: 61 VGKSIRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVE---MGMGAIRPVITRY 116 ++ S Q V K+ R DY+ +K VE +G+ Sbjct: 61 TDRNTALLEAVSLESHPAQDTGVTLAIGWGKSKRRDYLFEKLVELQGLGVA---FWSAAR 117 Query: 117 TQNTHYN--MDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCG 173 +Q + + R + AA+QC LP I P L LL + A E+ Sbjct: 118 SQGQMPDTPKESWRDKCVQAAKQCGNPLLPTITVLPAGLGGLLDFARGFDRCYVAWESDE 177 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++ L A I+IGPEGG +E L FV P++LG ILR +TAA Sbjct: 178 ADRPL--TPADLSCGTSLIVIGPEGGLEHDEALALLEGGFV-PVTLGQSILRWETAATYC 234 Query: 234 MAL-VQAICGD 243 ++L A GD Sbjct: 235 LSLGWFARQGD 245 >gi|307330999|ref|ZP_07610130.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu 4113] gi|306883385|gb|EFN14440.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu 4113] Length = 247 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 15/227 (6%) Query: 11 FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65 FV L + G + + V R++ G+ ++L +G ++ V + Sbjct: 6 FVADSLAGAAAGARVWLEGPEGRHAVSVRRLRVGEPVVLTDGHGTGVQGTVAAVEGKDRL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + V+ + + + + K +R + ++ E G+ A+ P + Sbjct: 66 QIAVDEVRQEAAPDPRITVVQALPKGDRGELAVETMTETGVDAVVPWSASRCITQWKGER 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + R+ A +Q LT P + T + + E G + Sbjct: 126 GLKALGKWRSTAREAGKQSRRLTFPEVPDAMTTKQVALLLAEAAFAAVLHEEGGEPLASA 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 +L A + +++GPEGG EE P LGP +LR+ Sbjct: 186 QLPA---RGEIVLVVGPEGGVSPEELAAFAEAG-ARPYRLGPSVLRT 228 >gi|283783329|ref|YP_003374083.1| RNA methyltransferase, RsmE family [Gardnerella vaginalis 409-05] gi|298252732|ref|ZP_06976526.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis 5-1] gi|283442186|gb|ADB14652.1| RNA methyltransferase, RsmE family [Gardnerella vaginalis 409-05] gi|297533096|gb|EFH71980.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis 5-1] Length = 265 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 18/240 (7%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 + +R+ EGD + L +GK +K++ V + +VE +R + + Sbjct: 27 TITLPSQVKRHAISAMRLLEGDALQLSDGKGLRIHAKVTDVENGL-VRVEAFTREAPRMT 85 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYTISAAEQ 137 + + + KT + I + ++G+ + P + + D R SA EQ Sbjct: 86 RLALVQALAKTGHDEQAIDMATQIGVDEVIPWCADRSIAKWKPGRTDKRWSQVLQSATEQ 145 Query: 138 CDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLEKL--------HAI 184 +P + + + ++ N IV + N +E+ Sbjct: 146 SRRAWMPELQECVSSKQIVAICRRACVYGNLVIVLHQDATDCWNQIEQAVNTLSERCLED 205 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +L+GPEGG +E + + LG ILR+ TA A++L+ G + Sbjct: 206 GKERTVYVLVGPEGGISDDEVSMFIDAGAKSCV-LGSNILRASTAGPVALSLLSRALGRY 264 >gi|182438789|ref|YP_001826508.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779444|ref|ZP_08238709.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces cf. griseus XylebKG-1] gi|178467305|dbj|BAG21825.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659777|gb|EGE44623.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces cf. griseus XylebKG-1] Length = 247 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 9/224 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69 FV + + G + + V R++ G++++L +G + R V Sbjct: 6 FVVERMPTGPEFVLEGPEGRHAVSVKRLQPGEDVVLTDGLGHWAEGVVRAAEGKDRLTVT 65 Query: 70 -EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122 + + + K +R + ++ E G+ AI P Sbjct: 66 GLGVHEEPAPDPRITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWRGDRGAK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + R+ A +Q + P + T + E +++ Sbjct: 126 ALSKWRSTAREAGKQSRRVRFPEVAEAMTTRQVAALLAAADFAAVLHEDRDHDSTPLATA 185 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + ++ +++GPEGG +E P LG +LR+ Sbjct: 186 ELPAGGSIVLVVGPEGGVSPQELAAFAEAG-ARPYRLGRSVLRT 228 >gi|298715395|emb|CBJ28006.1| conserved unknown protein [Ectocarpus siliculosus] Length = 301 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 70/298 (23%), Positives = 120/298 (40%), Gaps = 92/298 (30%) Query: 36 LRMKEGDNILLFNGKDGEWLSKISY--------------------------------VGK 63 +R+++G+ + +F+G +GE+L+ ++ K Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEK 60 Query: 64 SIRFKVEYQSRSQTKQ-------------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110 I +VE +R Q +++ +F+PI+ RL +++K+VE+G + Sbjct: 61 VIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLT 120 Query: 111 PVITRYTQNTHYN----MDRVRTY-TISAAEQCDILTLPFIYPPTTLEFLLKNWD----- 160 PV+T TQ + +DR+ + AAEQC+ +T+P + P TL L++ + Sbjct: 121 PVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSS 180 Query: 161 -------------------HNCQIVFADETCGSENSLEKLHAIAHI-------------- 187 + V + + LE L Sbjct: 181 CDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSD 240 Query: 188 ----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 N A LIGPEGG+ +E TL PFV +SLG +LR++TAAV A++ A Sbjct: 241 DNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFW 298 >gi|314931976|gb|EFS95807.1| RNA methyltransferase, RsmE family [Propionibacterium acnes HL067PA1] Length = 246 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75 + + + + H+ V R++ G+ +L+ +G+ I S+ + + Sbjct: 14 VPGSVVEITDAEGHHAGSVRRIRVGETVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129 + + K++R + + EMG+ I R ++ + R + Sbjct: 74 PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 A +Q +P + T E + + + V + SE + + Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLHE--SASEPLVH--QELPASGE 189 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 V ++GPEGG S+E E + P+++ +LR+ TA V +A ++A Sbjct: 190 VIFIVGPEGGITSQEVEAFVAAG-ARPVTVWDGVLRTSTAGVVGLAQLRA 238 >gi|329946944|ref|ZP_08294356.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526755|gb|EGF53768.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170 str. F0386] Length = 270 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 21/246 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQS 73 T +G + + V R++ + + L +G L +++ G + +V + Sbjct: 25 GTVLMLTGPEARHAVTVKRLRAEERVDLVDGVGLRLLCEVTGAGVGGAKDCLAVRVLERV 84 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRV 127 + + + K R + ++ + E+GMG + P R Sbjct: 85 EEPEPSLRLTLVQALAKGGRDEQAVETATEVGMGLVLPWQAERCVSIWQAAKQAKGRQRW 144 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADET-CGSENSLEKL 181 + + AA+Q +P + L+ + +V +E N++E + Sbjct: 145 QATALQAAKQARRARVPEVDEARDTRRLVDWVGQTVRGGGVVLVLHEEAMTPISNAMESV 204 Query: 182 HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 A +A+++GPEGG EE L + +T + LGP ++R+ +A A+A++ Sbjct: 205 RLPASGEASLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVLA 263 Query: 239 AICGDW 244 G W Sbjct: 264 HASGLW 269 >gi|189501155|ref|YP_001960625.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium phaeobacteroides BS1] gi|189496596|gb|ACE05144.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides BS1] Length = 248 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 101/250 (40%), Gaps = 37/250 (14%) Query: 10 LFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 + G+++ ++ VLR KE + I + +G ++I+ +G++ + Sbjct: 4 FYTPSDRIDLSGGALTVEGEEFFHITKVLRKKEREVIHITDGMGLSVTAEITKIGRNGLT 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V + + ++V S +K+ R D+ ++K+ E+G+ I P+IT T + Sbjct: 64 AAVTEKKKVLPPSAEVTVALSLLKSSQRFDFFLEKATELGVAGIVPMITERTVSQPKAEK 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 ++R + +SAA Q P I P + +LK ++ +++ + + + + Sbjct: 124 RARKLERWKKVVVSAALQTKRYHFPEITAPLHFDAVLKREGYDSKLIACETSSIAPDV-- 181 Query: 180 KLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 V L+ E F +S G ILR++TA Sbjct: 182 ----SFFGRKVLFLVGGEGGFTGEE----------LEMAVKKGFCE-ISFGHSILRAETA 226 Query: 230 AVAAMALVQA 239 + A+A+ +A Sbjct: 227 GIFAVAMARA 236 >gi|154248861|ref|YP_001409686.1| 16S ribosomal RNA methyltransferase RsmE [Fervidobacterium nodosum Rt17-B1] gi|154152797|gb|ABS60029.1| protein of unknown function DUF558 [Fervidobacterium nodosum Rt17-B1] Length = 225 Score = 154 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 15/215 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + ++ V+R+KEG+ + +G G++ I +GK+ + Sbjct: 11 NDSVYFDEHEVTHM-KVMRLKEGEIVEATDGNGGKYKVIIKSIGKNEAYGNVLSYEFVEV 69 Query: 79 QSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAE 136 ++ +F+P + RL + I+K+VE+G+ I D++ A++ Sbjct: 70 TNNKLVLFAPSGRWERLRWTIEKAVELGVDEIYVFNNERASRHYDDKQDKLELIVREASK 129 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC P I P L+ + + F S +V I+ GP Sbjct: 130 QCVRYHFPTIKPIEFLDIFSLAPESTYILDFKGRKIPKRIS----------KSVGIIAGP 179 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 EGG+ E + L S + LG +ILR +TA + Sbjct: 180 EGGFSKSELKLLKSK--FKSICLGKKILRFETAII 212 >gi|166365923|ref|YP_001658196.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843] gi|166088296|dbj|BAG03004.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843] Length = 157 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142 + + K D +++ + E+G+ I P++T + +DR R A EQ + Sbjct: 1 MVAIPKNG-FDDIVRAATELGVYRIIPLLTERGLVNPSPQKIDRWRKIAREAVEQSERQI 59 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I P +L + T + + L L + + + IGPEGG+ Sbjct: 60 IPIIEEPQPFLAILNRGVSPGTTCYIGVTRRTVDPL--LSQLQTSTEITMAIGPEGGWTE 117 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E + F+ P+SLG RILR+ TA + A+A++ A Sbjct: 118 AEIEQAIAADFL-PVSLGKRILRTITAPLVALAIINAYL 155 >gi|66361363|pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A Resolution gi|66361364|pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A Resolution Length = 234 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 18/223 (8%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + + H+ V+R+KEGD I +G + + + K + + Sbjct: 21 AQNGEVIFDEREAHH-XRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEK 79 Query: 77 TKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134 K+ + + R ++I+K VE+G+ I +Q ++D+ + A Sbjct: 80 EKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISLDKAKIVVREA 138 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 A+QC P + L+ + + ++ D S+N L+ ++ +++ Sbjct: 139 AKQCKRYLFPKVS-------FLEKLEFSGNVITLD-LDASQNLLDANLE----GSITVVV 186 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 GPEGG+ +E+E L S T +SLG +ILR +TAA+ + + Sbjct: 187 GPEGGFSEKERELLRSS--TTIVSLGKKILRFETAAILTVGYI 227 >gi|325677133|ref|ZP_08156802.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707] gi|325552118|gb|EGD21811.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707] Length = 253 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 17/247 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 ++D + G + + A V R+K G+ +LL +G+ G + ++ GK + + Sbjct: 6 FYLDPLPDVGRPAVLDGPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKDRLDLE 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + Q V + + K R + ++ + E G+ + P + H Sbjct: 66 VTARLDQQPPTPQVTLVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-----VFADETCGSENS 177 + R R I+AA+Q +P + + +L+ V + S Sbjct: 126 GVTRWRNAAIAAAKQARRSFVPEVADLHHTQQVLERVREVVGRGGVVAVLHESAKSPFAS 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P V +++GPEGG +E + T + LGP +LR+ TAA A+ + Sbjct: 186 LP----LRDAPEVMLVVGPEGGLSDDEIAA-LTGAGATAVLLGPTVLRTSTAAAVALGAI 240 Query: 238 QAICGDW 244 + W Sbjct: 241 GVLTDRW 247 >gi|217076608|ref|YP_002334324.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho africanus TCF52B] gi|217036461|gb|ACJ74983.1| conserved hypothetical protein [Thermosipho africanus TCF52B] Length = 226 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 105/238 (44%), Gaps = 18/238 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + LF F + + ++ V R KE D I +GK + KI+ +GK Sbjct: 1 MPNLF--FGIKEDNNLIFDEHETVHIKTV-RKKENDIIECTDGKGYYYKVKITQIGKKKS 57 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-N 123 F +E + +++ + + RL ++I+KSVE+G+ I T ++ + Sbjct: 58 FGEILESKYIENNEKTFLSLFAPASRWERLRWLIEKSVELGVDNIYITKTAFSNRDYKDK 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++++ +A+QC P + T + + N + + + +KL A Sbjct: 118 VEKINMVIRDSAKQCVRFHFPNVD-FITFKNIKNYATKNTYFL--------DFNGQKLPA 168 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +V+I++GPEGG+ EE + L S + LG +ILR +TAA A++ + Sbjct: 169 NIDG-DVSIIVGPEGGFSKEELDFLFSN--FNAIRLGNKILRFETAAFVALSYFAIVL 223 >gi|308375866|ref|ZP_07445358.2| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis SUMu007] gi|308377996|ref|ZP_07481181.2| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis SUMu009] gi|308344953|gb|EFP33804.1| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis SUMu007] gi|308353884|gb|EFP42735.1| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis SUMu009] Length = 259 Score = 153 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD GD+ + A V R++ G+ ++L +G + G+ +R + Sbjct: 3 FYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 62 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K+ R + I+ + E G A Sbjct: 63 VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 122 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177 + R R SAA Q +P + + L++ +V +E Sbjct: 123 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 182 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A A ++ +++GPEGG +E L V + LGP +LR+ T Sbjct: 183 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTST 228 >gi|218296339|ref|ZP_03497082.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23] gi|218243133|gb|EED09664.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23] Length = 228 Score = 153 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 14/213 (6%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 G ++ +L VLR GD +F+ + E L+++ +G +R+++ + R + Sbjct: 8 SPGLTGVLPLEEGRHLVEVLRAGVGDRFTVFD-ESREALAEVVDLGPPVRYRILEERRPE 66 Query: 77 TKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTI 132 + +V + +K ++L +++ + E+G I+P+ITR++ + + R++ Sbjct: 67 REVGVEVVLYVALLKGDKLSEVVRAATELGATKIQPLITRHSVPKEMGEGKLRRLKAIAK 126 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 AA+Q L +P + PP L+ + + +V G+ + ++ + N+++ Sbjct: 127 EAAKQSGRLRVPEVLPPIPLKAV---PEVEQGLVAH---VGARALVREV--LDPNRNLSL 178 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +GPEGG+ EE L F P+SLG RILR Sbjct: 179 AVGPEGGFAEEEVALLEERGFA-PVSLGRRILR 210 >gi|313673214|ref|YP_004051325.1| hypothetical protein Calni_1254 [Calditerrivibrio nitroreducens DSM 19672] gi|312939970|gb|ADR19162.1| protein of unknown function DUF558 [Calditerrivibrio nitroreducens DSM 19672] Length = 233 Score = 153 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 15/229 (6%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKS 64 LKR ++D L + + D YH++ +VLR K GD + N + GE+ + +S Sbjct: 4 KLKRFYIDKDLT--DEIEIDEDMYHHIKNVLRTKIGDKFIFINDSEVGEYQF-YFGMKRS 60 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN- 123 F + + + + ++ D +++K E+G+ + PVIT+ + T N Sbjct: 61 GIFTLNNKKSHEILDYKLNVYLGILQREYFDTVMEKLGEIGVTNVIPVITKRSIQTVNNN 120 Query: 124 -MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R++ I A Q + LP + + + N D+N E S+N +E Sbjct: 121 TVERIKKLLIKGALQAEHDFLPSLDAVLNISEITPNTDNN---FLLYERKESKNRMEI-- 175 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 +V+++IGPEGG+ +E E L FV P+S +L+++TAA+ Sbjct: 176 ---GSKSVSLVIGPEGGFEEDEIELLSDKGFV-PVSPIKGVLKAETAAL 220 >gi|15609509|ref|NP_216888.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis H37Rv] gi|15841884|ref|NP_336921.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis CDC1551] gi|31793549|ref|NP_856042.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis AF2122/97] gi|121638251|ref|YP_978475.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662204|ref|YP_001283727.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis H37Ra] gi|148823574|ref|YP_001288328.1| hypothetical protein TBFG_12397 [Mycobacterium tuberculosis F11] gi|167968750|ref|ZP_02551027.1| hypothetical protein MtubH3_12215 [Mycobacterium tuberculosis H37Ra] gi|215404298|ref|ZP_03416479.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215412118|ref|ZP_03420882.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|215431312|ref|ZP_03429231.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis EAS054] gi|215446615|ref|ZP_03433367.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T85] gi|218754100|ref|ZP_03532896.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis GM 1503] gi|219558363|ref|ZP_03537439.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T17] gi|224990745|ref|YP_002645432.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798551|ref|YP_003031552.1| hypothetical protein TBMG_01603 [Mycobacterium tuberculosis KZN 1435] gi|254365148|ref|ZP_04981194.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551419|ref|ZP_05141866.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187375|ref|ZP_05764849.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis CPHL_A] gi|260201496|ref|ZP_05768987.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis T46] gi|289443893|ref|ZP_06433637.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289448014|ref|ZP_06437758.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium tuberculosis CPHL_A] gi|289553839|ref|ZP_06443049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570515|ref|ZP_06450742.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289746150|ref|ZP_06505528.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289754477|ref|ZP_06513855.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289758494|ref|ZP_06517872.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289762538|ref|ZP_06521916.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994523|ref|ZP_06800214.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis 210] gi|297634973|ref|ZP_06952753.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis KZN 4207] gi|297731966|ref|ZP_06961084.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis KZN R506] gi|298525853|ref|ZP_07013262.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306776638|ref|ZP_07414975.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis SUMu001] gi|306780410|ref|ZP_07418747.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis SUMu002] gi|306785160|ref|ZP_07423482.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis SUMu003] gi|306789520|ref|ZP_07427842.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis SUMu004] gi|306793846|ref|ZP_07432148.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis SUMu005] gi|306798242|ref|ZP_07436544.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis SUMu006] gi|306804119|ref|ZP_07440787.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis SUMu008] gi|306972749|ref|ZP_07485410.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis SUMu010] gi|307080454|ref|ZP_07489624.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis SUMu011] gi|307085049|ref|ZP_07494162.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis SUMu012] gi|313659300|ref|ZP_07816180.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis KZN V2475] gi|54040530|sp|P67203|RSME_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|54042959|sp|P67202|RSME_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|2078027|emb|CAB08467.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882151|gb|AAK46735.1| conserved hypothetical protein TIGR00046 [Mycobacterium tuberculosis CDC1551] gi|31619142|emb|CAD97254.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493899|emb|CAL72374.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150662|gb|EBA42707.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506356|gb|ABQ74165.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148722101|gb|ABR06726.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224773858|dbj|BAH26664.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo 172] gi|253320054|gb|ACT24657.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 1435] gi|289416812|gb|EFD14052.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420972|gb|EFD18173.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium tuberculosis CPHL_A] gi|289438471|gb|EFD20964.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289544269|gb|EFD47917.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289686678|gb|EFD54166.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289695064|gb|EFD62493.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289710044|gb|EFD74060.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289714058|gb|EFD78070.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298495647|gb|EFI30941.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308214955|gb|EFO74354.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis SUMu001] gi|308326731|gb|EFP15582.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis SUMu002] gi|308330144|gb|EFP18995.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis SUMu003] gi|308334005|gb|EFP22856.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis SUMu004] gi|308337786|gb|EFP26637.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis SUMu005] gi|308341467|gb|EFP30318.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis SUMu006] gi|308349264|gb|EFP38115.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis SUMu008] gi|308357829|gb|EFP46680.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis SUMu010] gi|308361775|gb|EFP50626.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis SUMu011] gi|308365397|gb|EFP54248.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis SUMu012] gi|323719038|gb|EGB28186.1| hypothetical protein TMMG_01663 [Mycobacterium tuberculosis CDC1551A] gi|326903988|gb|EGE50921.1| hypothetical protein TBPG_01877 [Mycobacterium tuberculosis W-148] gi|328458319|gb|AEB03742.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 262 Score = 153 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD GD+ + A V R++ G+ ++L +G + G+ +R + Sbjct: 6 FYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K+ R + I+ + E G A Sbjct: 66 VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177 + R R SAA Q +P + + L++ +V +E Sbjct: 126 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A A ++ +++GPEGG +E L V + LGP +LR+ T Sbjct: 186 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTST 231 >gi|38234290|ref|NP_940057.1| hypothetical protein DIP1719 [Corynebacterium diphtheriae NCTC 13129] gi|38200553|emb|CAE50248.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 252 Score = 153 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 12/232 (5%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS-IRFKVEYQSRSQTK 78 G + + V RM G+ I L +G+ G + ++ GKS + +V + T Sbjct: 25 NVVLDGAEGRHAVSVKRMTAGEQIKLIDGRGGWATATVASTSGKSTLNLQVFECNEEATP 84 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTI 132 V + K+ R + + + G AI P + + + I Sbjct: 85 TPTVTVFQAIPKSERSELAVDLLTQGGADAIVPWEAHRCVAKWVGAKRSKGVLKWQQAAI 144 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 +AA+Q +P I P T + + + ++ E ++ ++A+ Sbjct: 145 AAAKQSRRTRIPEIAEPMTTAQIAEQLEQFDVVLVLHEDAA---VPFATVDVSTAKSIAL 201 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +IGPEGG +E E + LGP +LR+ +A + A+A + W Sbjct: 202 IIGPEGGVSPDEAEAFRKAG-ARAVKLGPEVLRTASAGIVALAALGVQTSRW 252 >gi|162447807|ref|YP_001620939.1| hypothetical protein ACL_0953 [Acholeplasma laidlawii PG-8A] gi|161985914|gb|ABX81563.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A] Length = 227 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 17/225 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F+D + K D H++ +V+R K G + + G G +L+ + K + Sbjct: 1 MQRYFLDH------KNKIDKDDVHHILNVMRFKSGTVVEVC-GISGCYLATLEIQHKEVG 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHY 122 F + + +V + K +++D + + + +I V + + N + Sbjct: 54 F-LTTEKLDDNPPLNVTIVQGLPKGDKMDTVTKYATLFQAKSIIFVAMKRSIAKLSNVDH 112 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R+ AAE TLP I L+ + Q+V DE N + + Sbjct: 113 KLSRLNKIAKEAAELSKRSTLPHIQLLENLKDI---NTDGKQLVLLDELERVYNIKDFIK 169 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + ++ +++GPEGG E+ L +T +SLG IL ++ Sbjct: 170 DHGN-KDLIVIVGPEGGIDETERNALVERGAIT-VSLGQSILPTE 212 >gi|305681207|ref|ZP_07404014.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii ATCC 14266] gi|305659412|gb|EFM48912.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii ATCC 14266] Length = 239 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ P + + +GD+ + V R G+ I L +G + ++ V R Sbjct: 1 MQEF--PTPPTVGKVIELTGDEGRHAVSVKRTSVGEQIELVDGHGTRAVITVTGVSGKDR 58 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 V+ + + V + + K R + + + G I P + + + Sbjct: 59 LVGVVDCVASEPAPRPTVTVVQALPKAARSELTVDLLTQAGADVIVPWQAGRSVANWGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSL 178 + + R +AA+Q +P I P ++ ++ ++ G Sbjct: 119 QDKGLAKWRAAARAAAKQSRRSRIPEITPVADQAAVVALIQAAPLALMLHEDATGKITD- 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +A + +V ++IGPEGG E + + P+ LGP +LR+ +A + A+A + Sbjct: 178 ---QPVAQVDSVVLIIGPEGGISPAELDAFTAAG-AHPVRLGPEVLRTASAGMVALAALG 233 Query: 239 AICGDW 244 A+ W Sbjct: 234 AVTDRW 239 >gi|312140293|ref|YP_004007629.1| RNA methyltransferase [Rhodococcus equi 103S] gi|311889632|emb|CBH48949.1| putative RNA methyltransferase [Rhodococcus equi 103S] Length = 253 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 17/247 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 ++D + G + + A V R+K G+ +LL +G+ G + ++ GK + + Sbjct: 6 FYLDPLPDVGRPTVLDGPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKDRLDLE 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + Q V + + K R + ++ + E G+ + P + H Sbjct: 66 VTARLDQQPPTPQVTLVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-----VFADETCGSENS 177 + R R I+AA+Q +P + + +L+ V + S Sbjct: 126 GVTRWRNAAIAAAKQARRSFVPEVADLHHTQQVLERVREVVGRGGVVAVLHESAKSPFAS 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P V +++GPEGG +E + T + LGP +LR+ TAA A+ + Sbjct: 186 LP----LRDAPEVMLVVGPEGGLSDDEIAA-LTGAGATAVLLGPTVLRTSTAAAVALGAI 240 Query: 238 QAICGDW 244 + W Sbjct: 241 GVLTDRW 247 >gi|21221011|ref|NP_626790.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces coelicolor A3(2)] gi|256787825|ref|ZP_05526256.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces lividans TK24] gi|289771712|ref|ZP_06531090.1| RNA methyltransferase [Streptomyces lividans TK24] gi|6714766|emb|CAB66230.1| conserved hypothetical protein SCC77.19c [Streptomyces coelicolor A3(2)] gi|289701911|gb|EFD69340.1| RNA methyltransferase [Streptomyces lividans TK24] Length = 249 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 14/222 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY- 71 L + G + + V R++ G++++L +G+ + R V Sbjct: 13 PQDLPAG-EYVLDGPEGRHAVSVKRLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVP 71 Query: 72 --QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYN 123 +Q + + + K +R + ++ E+G+ AI P + Sbjct: 72 GGVREEPAEQPRITVVQALPKGDRGELAVETMTEVGVDAIVPWAASRCITQWKGERGLKA 131 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 + + R A +Q + P + + + + E+ S +L A Sbjct: 132 LGKWRATAREAGKQSRRVRFPDVADAASSKQVASLLAAADFAAVLHESGDVPLSDAELPA 191 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ +++GPEGG +E P LG +LR Sbjct: 192 S---GDIVLVVGPEGGVSPDELALFAEAG-ADPYRLGRSVLR 229 >gi|134098067|ref|YP_001103728.1| protein involving differentiation [Saccharopolyspora erythraea NRRL 2338] gi|291007474|ref|ZP_06565447.1| protein involving differentiation [Saccharopolyspora erythraea NRRL 2338] gi|133910690|emb|CAM00803.1| protein involving differentiation [Saccharopolyspora erythraea NRRL 2338] Length = 245 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 12/214 (5%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSD 81 SG + + A V R+ G+ +LL +G+ G ++ + S+ VE Sbjct: 18 ALSGPEGRHAATVRRIGVGEQLLLSDGRGGMARCSVTSTARDSLELDVEESWLVPRPALR 77 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHYNMDRVRTYTISA 134 V+ + +K +R + ++ + E G+ + P + R R+ A Sbjct: 78 VRLAQALVKGDRGELAVELATEAGVDGVLPWKAARCVARWDDGPRGAKALGRWRSTVAQA 137 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 A+Q P + P T L + V E+ + L + A + +++ Sbjct: 138 AKQARRPWTPEVGEPVTTRQLSRVVAEADAAVVLHESAST--PLASVDLPAEGE-LVLVV 194 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 GPEGG +E L + LGP +LR+ T Sbjct: 195 GPEGGVGEDELAVLTEAG-AQAVRLGPSVLRAST 227 >gi|58697158|ref|ZP_00372581.1| surface protein [Wolbachia endosymbiont of Drosophila simulans] gi|58536534|gb|EAL59900.1| surface protein [Wolbachia endosymbiont of Drosophila simulans] Length = 182 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 9/186 (4%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + ++ Q + ++ + +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 + I AAEQ +++P I PP L + N V DET ++ L Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVL------KGK 176 Query: 188 PNVAIL 193 NVAI+ Sbjct: 177 KNVAII 182 >gi|225021770|ref|ZP_03710962.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii ATCC 33806] gi|224945466|gb|EEG26675.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii ATCC 33806] Length = 239 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 15/246 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ P + + +GD+ + V R G+ I L +G + ++ V R Sbjct: 1 MQEF--PTPPTVGKVIELTGDEGRHAVSVKRTSVGEQIELVDGHGTRAVITVTGVSGKDR 58 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119 V+ + + V + + K R + + + G I P + + + Sbjct: 59 LVGVVDCVASEPAPRPTVTVVQALPKAARSELTVDLLTQAGADVIVPWQAGRSVANWGKK 118 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSL 178 + + R +AA+Q +P I P ++ ++ ++ G Sbjct: 119 QDKGLAKWRAAARAAAKQSRRSRIPEITPVADQAAVVALIQAAPLALMLHEDATGKITD- 177 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +A + +V ++IGPEGG E + + P+ LGP +LR+ +A + A+A + Sbjct: 178 ---QPVAQVDSVVLIIGPEGGISPAELDAFTAAG-ARPVRLGPEVLRTASAGMVALAALG 233 Query: 239 AICGDW 244 A+ W Sbjct: 234 AVTDRW 239 >gi|294629283|ref|ZP_06707843.1| RsmE family RNA methyltransferase [Streptomyces sp. e14] gi|292832616|gb|EFF90965.1| RsmE family RNA methyltransferase [Streptomyces sp. e14] Length = 293 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 16/220 (7%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV---EYQSRS 75 + G + + V R++ G++++L +G + R + E Sbjct: 59 GGEFVLDGPEGRHAVSVKRLRPGEDVVLTDGHGRWAEGVVKAAEGKDRLVITDLESVVEE 118 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 +Q + + + K R + ++ E+G+ AI P + + R Sbjct: 119 PPEQPRITVVQALPKGERGELAVETMTEVGVDAIVPWQAARCITQWKGDRGLKALGKWRA 178 Query: 130 YTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 A +Q + P + T + LL D ++ +D GSE + Sbjct: 179 TAREAGKQSRRVRFPEVAETATTKQVAALLAKADFAA-VLHSDFEYGSEPLATA--ELPA 235 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + +++GPEGG S+E + LG +LR+ Sbjct: 236 EGEIVLVVGPEGGVSSDELAQFREAGARAYV-LGRSVLRT 274 >gi|319947872|ref|ZP_08022059.1| 16S ribosomal RNA methyltransferase RsmE [Dietzia cinnamea P4] gi|319438478|gb|EFV93411.1| 16S ribosomal RNA methyltransferase RsmE [Dietzia cinnamea P4] Length = 261 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 15/222 (6%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRS 75 + G + + LR++ G+ I + +G+ ++ + +V + Sbjct: 9 AVGETVVLDGPEGRHAGSALRVRPGEAIRVGDGRGAVADCVVTTTSSGRVEAEVVTRVDV 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRT 129 +V + + K+ R + ++ + E G I P + Sbjct: 69 PRPTPEVTVVQALPKSERSELAVELATEAGADRIVPWQADRCVSRWTGPKVDKGRTKWTN 128 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLEKLHAI 184 +AA+Q P I L +V +E G+ + + A Sbjct: 129 AARAAAKQSRRAWEPEIGDLVDSTALAALVAAEVEGGASALVLHEE--GAAGFADAVTAG 186 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 V +++GPEGG E + L + P+ LGP +LR+ Sbjct: 187 PTGERVLVVVGPEGGVSDAELDALTAAG-ARPVVLGPEVLRT 227 >gi|297199593|ref|ZP_06916990.1| ribosomal RNA small subunit methyltransferase E [Streptomyces sviceus ATCC 29083] gi|297147443|gb|EDY57513.2| ribosomal RNA small subunit methyltransferase E [Streptomyces sviceus ATCC 29083] Length = 292 Score = 152 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 10/225 (4%) Query: 11 FVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRF 67 FV+ + G + + V R++ G++++L +G + + + Sbjct: 50 FVEQTEPGTGGRYVLDGPEGRHAVSVKRLQPGEDVILTDGAGHWADCVVLGTEGKDRLIV 109 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +++ + + Q + + + K +R + ++ E+G+ AI P + Sbjct: 110 QLDSVNEAPDVQPRITVVQALPKGDRGELAVETMTEVGVDAIVPWQAARCITQWKGERGL 169 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + R A +Q + P I T + + ++ Sbjct: 170 KALGKWRATAREAGKQSRRIRFPDIADAATTKQVAALLAKADFAAVLHSDFERGSAPLAT 229 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + +++GPEGG +E + LG +LR+ Sbjct: 230 AELPDEGEIVLVVGPEGGVAKDELALFEEAGARAYV-LGSTVLRT 273 >gi|323697889|ref|ZP_08109801.1| protein of unknown function DUF558 [Desulfovibrio sp. ND132] gi|323457821|gb|EGB13686.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans ND132] Length = 246 Score = 152 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 10/242 (4%) Query: 4 HSHLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 + L F+ P SG + ++ +LR + + LF+G + L + Sbjct: 1 MARLNTFFLSPDQWPAVAGDVVVLSGPEARHMGTILRTERSQTVRLFDGHGRDGLFTVRD 60 Query: 61 VGKSIRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 + K+ + + + K+ R DY+++K+VE+ + +Q Sbjct: 61 IAKNRAELEALELAEHPASATGLTLAIGWGKSKRRDYLLEKTVELQGAGLIFWQAARSQG 120 Query: 120 THYN--MDRVRTYTISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSEN 176 + + + + AA+QC + LP + + ++ L+ A E + Sbjct: 121 SLPDDPKETWTEKFVQAAKQCGAVWLPELDTVSGGVDGLIPLAGRFDHCYLAWEAEEAVT 180 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L + + ++IGPEGG+ +E + L F P++LGP ILR +TAAV ++L Sbjct: 181 PLSPV--MLSKGRTLVVIGPEGGFDPDEADRLVRAGFG-PVTLGPSILRWETAAVYCLSL 237 Query: 237 VQ 238 Sbjct: 238 AM 239 >gi|260205673|ref|ZP_05773164.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium tuberculosis K85] gi|289575065|ref|ZP_06455292.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539496|gb|EFD44074.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 262 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 +VD GD+ + A V R++ G+ ++L +G + G+ +R + Sbjct: 6 FYVDILPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122 V + + V + + K+ R + I+ + E G A Sbjct: 66 VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177 + R R SAA Q +P + + L++ +V +E Sbjct: 126 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A A ++ +++GPEGG +E L V + LGP +LR+ T Sbjct: 186 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTST 231 >gi|256825015|ref|YP_003148975.1| hypothetical protein Ksed_11710 [Kytococcus sedentarius DSM 20547] gi|256688408|gb|ACV06210.1| conserved hypothetical protein TIGR00046 [Kytococcus sedentarius DSM 20547] Length = 253 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 17/248 (6%) Query: 10 LFV-DFPLC-IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66 LFV D PL + +G++ + A V R+ G+ +L+ +G ++ K + Sbjct: 5 LFVADGPLAPVGGSLVLTGEEGRHAATVQRIAVGEQVLVTDGAGAGVRGEVLATAKDRLE 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +V + + ++ + + K+ R + I+ SVE+G+ + P + Sbjct: 65 LRVLEELAEPEPRPRLELVQALAKSGRAEQSIETSVEIGVDHVLPWEAERSISRWSGPKA 124 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENS 177 + +A +Q L + + L + + + + ++ Sbjct: 125 AKGRAKWAGVVRAATKQSRRLREAEVAELVSSAGLARRIEEGAREGELTLVLHEVATDRL 184 Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 L L + P V ++IGPEGG E E P+ LGP +LR+ +A A Sbjct: 185 LPVLTGLVGDGPVPPVVRVVIGPEGGISPRELELFTEAGG-HPVLLGPHVLRTSSAGPVA 243 Query: 234 MALVQAIC 241 ++LV Sbjct: 244 LSLVAGAL 251 >gi|54023394|ref|YP_117636.1| 16S ribosomal RNA methyltransferase RsmE [Nocardia farcinica IFM 10152] gi|54014902|dbj|BAD56272.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 246 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68 ++D G + + A V R + G+ I L +G+ S++ + + + Sbjct: 6 FYLDDIPEPGRVAVLDGPEGRHAATVRRTRVGEPITLSDGRGLLAASEVVAAQRDRLELR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYN 123 V ++ + +V + + K++R + + E G AI P Sbjct: 66 VLERTVAPRPAPEVTVVQALPKSDRSELAVDLMTEAGADAIVPWQAARCVANWEGKAAKG 125 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEK 180 +++ R+ SAA Q +P + +L+ +V A G+ E Sbjct: 126 VEKWRSAARSAARQSRRAYIPEVADLHRTRDVLELVRGARAEGAVVAALHESGTAKFTEL 185 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + A V +++GPEGG E L + L LGP +LR+ T Sbjct: 186 --SFAGASRVVLIVGPEGGLDDGELVALAAAGAQVTL-LGPTVLRTST 230 >gi|119025736|ref|YP_909581.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium adolescentis ATCC 15703] gi|118765320|dbj|BAF39499.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 265 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K+GD + L +G+ + + V + I +V + Sbjct: 21 ELNAGWRLTLPSSVRRHAIQAMRLKDGDELQLSDGRGLRIHAVLRDVQQGI-AEVLRFGK 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYT 131 + + + + KT + I + ++G+ + P + + D + R Sbjct: 80 EPQPVTRLALVQALAKTGHDEQAIDMATQIGVDQVIPWQADRSIAKWKAGRTDKKWRQVL 139 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHA--- 183 SA EQ P + T + ++ C IV + + LE A Sbjct: 140 ESATEQSRRSWTPQLDDCVTSKQVVAICKRACVHGDMVIVLHQDATKTWEQLETGIAKLS 199 Query: 184 -----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +L+GPEGG E E + LG ILR+ TA A++L+ Sbjct: 200 DTCLKDGRPRTIYVLVGPEGGISDAEVEAFTKAGAEVCV-LGSNILRASTAGPVALSLLA 258 Query: 239 AICGDW 244 G + Sbjct: 259 RALGRF 264 >gi|297626078|ref|YP_003687841.1| hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921843|emb|CBL56403.1| Hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 249 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 11/221 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76 G + + A V RM+ G+++L+ +G I V K S+ +V + Sbjct: 15 PGDVVLIEGPEGRHAATVKRMRVGESVLVADGAGAGLRGVIDSVAKNSVSVRVGELIARR 74 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYT 131 + + K R D ++ E+G+ I + + + R+ Sbjct: 75 PAALHTVAVQALAKGERSDIAVEAMTELGVDEIIAWQASRSIVRWEAKAEKGLAKWRSSA 134 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +A +Q +P + T + + + +V +E + L ++ Sbjct: 135 RAATKQSRRFRIPQVSTAGTPGVVERLARADLALVLHEEATTPLSGL----SVPSAGECV 190 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 +IGPEGG EE E +SL +LR+ TA V Sbjct: 191 FVIGPEGGISPEELEAFRGAG-ARLVSLSDAVLRASTAGVV 230 >gi|154487442|ref|ZP_02028849.1| hypothetical protein BIFADO_01294 [Bifidobacterium adolescentis L2-32] gi|154083960|gb|EDN83005.1| hypothetical protein BIFADO_01294 [Bifidobacterium adolescentis L2-32] Length = 289 Score = 151 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K+GD + L +G+ + + + I +V + Sbjct: 45 ELNAGWRLTLPSSVRRHAIQAMRLKDGDELQLSDGRGLRIHAVLRDAQQGI-AEVLRFGK 103 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYT 131 + + + + KT + I + ++G+ + P + + D + R Sbjct: 104 EPQPVTRLALVQALAKTGHDEQAIDMATQIGVDQVIPWQADRSIAKWKAGRTDKKWRQVL 163 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHA--- 183 SA EQ P + T + ++ C IV + + LE A Sbjct: 164 ESATEQSRRSWTPQLDDCVTSKQVVAICKRACVHGDMVIVLHQDATKTWEQLETGIAKLS 223 Query: 184 -----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + +L+GPEGG E E + LG ILR+ TA A++L+ Sbjct: 224 DTCLKDGRPRTIYVLVGPEGGISDAEVEAFTKAGAEVCV-LGSNILRASTAGPVALSLLA 282 Query: 239 AICGDW 244 G + Sbjct: 283 RALGRF 288 >gi|239931361|ref|ZP_04688314.1| 16S rRNA m3U1498 methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291439732|ref|ZP_06579122.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342627|gb|EFE69583.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 151 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 12/212 (5%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTK 78 + G + + V R++ G+ ++L +G ++ + + + + Sbjct: 18 RYVLDGPEGRHAVSVKRLRAGEGVVLTDGAGRWAEGEVAGTEGKDRLVVALGDVVEEPAE 77 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132 + + + K +R + ++ E+G+ AI P + ++ + R Sbjct: 78 SPRLTVVQALPKGDRGELAVETMTEVGVDAIVPWSAARCITQWKGERGLKSLAKWRATAR 137 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A +Q + P + T + ++ E+ + +L A ++ + Sbjct: 138 EAGKQSRRVRFPEVAEVATTKQVVPLLAGAAFAAVLHESGTEPLATAELPAS---GDIVL 194 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 ++GPEGG EE E P LG +L Sbjct: 195 VVGPEGGISPEELELFAQAG-ARPYRLGRSVL 225 >gi|311064213|ref|YP_003970938.1| hypothetical protein BBPR_0820 [Bifidobacterium bifidum PRL2010] gi|310866532|gb|ADP35901.1| Conserved hypothetical protein with DUF558 domain [Bifidobacterium bifidum PRL2010] Length = 280 Score = 151 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L + +R+ EGD + L +G+ + + ++ VE R Sbjct: 37 LNAGWTITLPASVKRHALGAMRLAEGDGLSLTDGRGLCVKTTLVDA-QAGLVSVERVGRQ 95 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYTI 132 + + I + KT + I + ++G+ + P + + DR R Sbjct: 96 PQPVTRLVLIQALAKTGHDEAAIDMATQIGVDEVIPWQANRSIAKWKAGRTDRKWRQVLD 155 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLE-------- 179 +A EQ + P + + + ++ + IV + S +S+E Sbjct: 156 AATEQSRRVWSPELAQCVSSKQVVAICRRACVHGDLVIVLHQDATMSWSSVEDEVSRLAD 215 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A ++ +++GPEGG +E + + LG ILR+ TA A++L+ Sbjct: 216 RCLADGRPRSINVVVGPEGGISEQEVSDFVGAGAQSVV-LGSNILRASTAGPVALSLLSR 274 Query: 240 ICGDW 244 G + Sbjct: 275 ALGRF 279 >gi|255323732|ref|ZP_05364860.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium tuberculostearicum SK141] gi|255299222|gb|EET78511.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium tuberculostearicum SK141] Length = 252 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 27/236 (11%) Query: 11 FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65 F+ L SG + + V RM EG+ + L +G I+ S+ Sbjct: 6 FIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDSL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V+ + V + + K+ R + + + + G I + Sbjct: 66 EGTVDSIDTAPEPTPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---------DHNCQIVFADE 170 + + + SAA+Q +P + P T L++ + +V +E Sbjct: 126 APKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLVQELTGRRDGASSNAPTVLVLHEE 185 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 S + + +V +L+GPEGG E + L TP+ LGP +LR+ Sbjct: 186 ATAS------IKDVPLTEDVVLLVGPEGGIGDAELDRLKEAG-ATPIKLGPEVLRT 234 >gi|157363096|ref|YP_001469863.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga lettingae TMO] gi|157313700|gb|ABV32799.1| protein of unknown function DUF558 [Thermotoga lettingae TMO] Length = 226 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 16/238 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--S 64 + +F + +L V+R+ G + + +GK + ++ +GK S Sbjct: 1 MPHIFYGK--QTGDFVILDEHESRHL-RVIRVSVGQKLFVTDGKGNLYNCELIELGKLES 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + K S + + RL ++++K+VE+G+ + T+ ++ Sbjct: 58 KAVVRNVEQTEINKLSKITLCIASQNWERLRFLLEKAVELGVDELIIYKTKRSKLYIDKE 117 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +++R AA+Q P + + FL + +V K+ Sbjct: 118 EKIRLIIRDAAKQSVRYLFPELRIFRDMSFL--QNESMKTVVLH-----QSGRAAKIDDF 170 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 ++ I++GPEG + SEE L + T L+LG +ILR +TAA+ A L + G Sbjct: 171 K--GSLRIVVGPEGDFESEEINQLSQVG--TFLNLGKKILRFETAAILAAGLSSFLNG 224 >gi|147845297|emb|CAN83371.1| hypothetical protein VITISV_034944 [Vitis vinifera] Length = 259 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 21/217 (9%) Query: 44 ILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSP-------------- 88 + LFNGK G I+ + ++ + F + QS ++F+ Sbjct: 40 VELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFDFAITCLQLLLLG 99 Query: 89 -IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFI 146 +K R D++++K E+G ++ P++T + + + +DR++ ++AA+QC L + Sbjct: 100 TLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTL 159 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 PPTT++ LL + + A + L + ++IGPEG + +E Sbjct: 160 NPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPEGDFTEKELN 217 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + T + LGP LR +TA +A +A + + D Sbjct: 218 MMREAG-ATAVGLGPHRLRVETATIALLATLM-LWSD 252 >gi|184200945|ref|YP_001855152.1| hypothetical protein KRH_12990 [Kocuria rhizophila DC2201] gi|183581175|dbj|BAG29646.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 253 Score = 151 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 12/217 (5%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQT 77 + +G + + V R++ G+ + L +G+ + + + V+ +R Sbjct: 19 GGTLEVTGPEARHAVTVRRLRAGEPLDLVDGRGTRAGCMFTAGERDRMTVAVDSVTREPV 78 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131 + + + K +R ++ + E+G+ + + + M + Sbjct: 79 TAPSLTLVQALAKGDRDLQAVESATELGVDRVVAWQAERSIVRLRAERAAKTMAKWEATL 138 Query: 132 ISAAEQCDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 SAA+Q P + P L L++ +V E+ + S A Sbjct: 139 ASAAKQSRRAHWPELAPWVDTAGLAELVRAEPETLWLVLH-ESVATPWSTAHAAAWRDRE 197 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +A+++GPEGG E L P+ LG ++R Sbjct: 198 RIAVVVGPEGGISDGELAALQGAG-ARPVRLGTTVMR 233 >gi|282861815|ref|ZP_06270879.1| protein of unknown function DUF558 [Streptomyces sp. ACTE] gi|282563631|gb|EFB69169.1| protein of unknown function DUF558 [Streptomyces sp. ACTE] Length = 247 Score = 151 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 9/223 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69 FV L + G + + V R+ G+ ++L +G+ + R V Sbjct: 6 FVVEHLADGPEFVLEGPEGRHAVSVKRLNPGEEVVLTDGRGRWAEGVVRAAEGKDRLVVG 65 Query: 70 -EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122 + + + K +R + ++ E G+ AI P Sbjct: 66 LTAVREEPVPAPRITVVQALPKGDRGEVAVETMTETGVDAIVPWQASRCITQWKGDRGLK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++ + RT A +Q + + T + + E ++ Sbjct: 126 SLAKWRTTAREAGKQSRRVRFCEVSEAMTTKQVAALLAGADFAGVLHEDRDVPSAALATA 185 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + ++ +++GPEGG +E P LGP +LR Sbjct: 186 ELPVRGSIVLVVGPEGGVSPQELAVFAEAG-APPYRLGPSVLR 227 >gi|302551336|ref|ZP_07303678.1| RNA methyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302468954|gb|EFL32047.1| RNA methyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 246 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 12/214 (5%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQ 76 + G + + V R++ G++++L +G + + + +++ + Sbjct: 16 GGRYVLDGPEGRHAVSVKRLRPGEDVVLTDGAGRWADCVVLDTEGKDRLIVQLDSVTEEP 75 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130 ++ V + + K +R + ++ E+G+ I P + + R Sbjct: 76 PEEPRVTVVQALPKGDRGELAVETMTEVGVDTIVPWAAARCITQWKGDRGLKALGKWRAT 135 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 A +Q + P + T + + E+ + +L + + Sbjct: 136 AREAGKQSRRVRFPEVAEAATTKQVAALLAGADFAAVLHESGDEPLATAELPSSGE---I 192 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 +++GPEGG EE P LG +L Sbjct: 193 VLVVGPEGGVAPEELALFEGAG-AKPYRLGRSVL 225 >gi|302534340|ref|ZP_07286682.1| involving differentiation [Streptomyces sp. C] gi|302443235|gb|EFL15051.1| involving differentiation [Streptomyces sp. C] Length = 289 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 10/223 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69 FV + + G + + V R+ G++++L +G+ + R V Sbjct: 47 FVVEEVPAGPEFVLDGPEGRHAVSVKRLGPGEDVVLTDGRGRWAEGVVKAAEGKDRLVVM 106 Query: 70 --EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 E + + + K +R + ++ E G+ AI P Sbjct: 107 DLESVLEEPEPDVRITVVQALPKGDRGEVAVETMTETGVDAIVPWQASRCITQWRGDRGA 166 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++ + R+ + +Q + P + + + + V E + + Sbjct: 167 KSLSKWRSTARESGKQSRRVRFPEVAGVMSTKQVAALLAQADLAVVLHEDRDTPSEALAT 226 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 + +V +++GPEGG EE P LG +L Sbjct: 227 APLPEKGSVVLVVGPEGGVSPEELAVFAEAG-ARPYRLGRSVL 268 >gi|225351945|ref|ZP_03742968.1| hypothetical protein BIFPSEUDO_03550 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157192|gb|EEG70531.1| hypothetical protein BIFPSEUDO_03550 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 265 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K+GD + L +GK + + + I +V + Sbjct: 21 ELNAGWKLTLPQSVRRHAIQAMRLKDGDELQLSDGKGLRIHAVLRDAQQGIA-EVSSFGK 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131 + + I + KT + I + ++G+ + P + + D+ R Sbjct: 80 EPQPTTKLALIQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDKKWRQVL 139 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGSENSLEKLHAIAH 186 +A EQ P + T + L+ C IV + + + LE+ A+ Sbjct: 140 DAATEQSRRSWTPELGECVTSKQLIAICKRACVHGDMVIVLHQDATKTWSQLEEAIAVLS 199 Query: 187 IP--------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 V +++GPEGG E E+ + + LG ILR+ TA A++L+ Sbjct: 200 DKCLQDGRQRTVYVVVGPEGGISDAEIESFTNAGAEACV-LGSNILRASTAGPVALSLLA 258 Query: 239 AICGDW 244 G + Sbjct: 259 RALGRF 264 >gi|224282929|ref|ZP_03646251.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|310287372|ref|YP_003938630.1| RNA methyltransferase [Bifidobacterium bifidum S17] gi|313140088|ref|ZP_07802281.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|309251308|gb|ADO53056.1| putative RNA methyltransferase [Bifidobacterium bifidum S17] gi|313132598|gb|EFR50215.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 265 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L + +R+ EGD + L +G+ + + ++ VE R Sbjct: 22 LNAGWTITLPASVKRHALGAMRLAEGDGLSLTDGRGLCVKTTLVDA-QAGLVSVERVGRQ 80 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYTI 132 + + I + KT + I + ++G+ + P + + DR R Sbjct: 81 PQPVTRLVLIQALAKTGHDEAAIDMATQIGVDEVIPWQANRSIAKWKAGRTDRKWRQVLD 140 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLE-------- 179 +A EQ + P + + + ++ + IV + S +S+E Sbjct: 141 AATEQSRRVWSPELAQCVSSKQVVAICRRACVHGDLVIVLHQDATMSWSSVEDEVSRLAD 200 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + A ++ +++GPEGG +E + + LG ILR+ TA A++L+ Sbjct: 201 RCLADGRPRSINVVVGPEGGISEQEVSDFVGAGAQSVV-LGSNILRASTAGPVALSLLSR 259 Query: 240 ICGDW 244 G + Sbjct: 260 ALGRF 264 >gi|195941291|ref|ZP_03086673.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a] Length = 243 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS 64 +K++ +D YH+L +V R+K+GD + + KD E + +I +G + Sbjct: 1 MKQIVLDENCLAGNFIIIKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGSN 59 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 60 FIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDI 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 N + R A +Q +P I +L ++ V S Sbjct: 120 NNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGII 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 176 LSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAYF 234 Query: 238 QAICGDW 244 +A+ D+ Sbjct: 235 KALLEDY 241 >gi|255327128|ref|ZP_05368203.1| ribosomal RNA small subunit methyltransferase E [Rothia mucilaginosa ATCC 25296] gi|255295746|gb|EET75088.1| ribosomal RNA small subunit methyltransferase E [Rothia mucilaginosa ATCC 25296] Length = 259 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 23/256 (8%) Query: 10 LFVDFP----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++ L G + + V R++ G+ I L +G L ++ + Sbjct: 6 FYISTEEYDALTPGATCALGGSEGKHAL-VKRLELGERIDLGDGTGRRALGTVASINADG 64 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + + R + + + + K R I+ + E+G+ + P + + Sbjct: 65 VSVLVQELREERSVPSIYLVQALAKDGRDLLAIETATELGVYGVLPWSADRSIVRWKGER 124 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---------NCQIVFADE 170 + + +AA+Q +P +Y + L++ + + ++ Sbjct: 125 ASKAHTKWQNTVTAAAKQSRRALIPEVYDLYSTADLVELIEEVAGEVSEQSAAVFILHEQ 184 Query: 171 TCGSENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 ++L + + A + +L+GPEGG E + L LG +LRS T Sbjct: 185 ATERLSALARKLVEAENLPEEIYLLVGPEGGISDREVQLFTDAGAQLAL-LGDEVLRSST 243 Query: 229 AAVAAMALVQAICGDW 244 A AAM + + G W Sbjct: 244 AGSAAMCTLNVVLGRW 259 >gi|213965759|ref|ZP_03393951.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium amycolatum SK46] gi|213951518|gb|EEB62908.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium amycolatum SK46] Length = 259 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 14/227 (6%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV 69 F + P + + G + +++ V R+K G ILL NG D +++ +V + + +V Sbjct: 10 FTELP-RPEEIIRILGSEAKHIS-VRRLKAGTEILLANGADKVVRAQLMHVDSREVHVRV 67 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY--TQNTHY 122 + V + + K++R + + E G+ I P + R+ T Sbjct: 68 IAAEERPRPRPHVTVVQALPKSDRAELAVDLMTEAGVDEIIPWAAVNCVARWQGTAKVTK 127 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + ++ AA+Q +P + +E L++ + + ++ Sbjct: 128 ARAKWQSAAREAAKQARRAWIPPVADLHSSADIEQLIRETTSAGGVAAVLHEEETAPFVK 187 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 A+ V ++GPEGG E E + + + LGP +LRS Sbjct: 188 LAAQAANADKVLFIVGPEGGVSPGELEAFRAAGASSVV-LGPTVLRS 233 >gi|289705009|ref|ZP_06501422.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58] gi|289558268|gb|EFD51546.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58] Length = 253 Score = 150 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 95/238 (39%), Gaps = 11/238 (4%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRS 75 + G + + A +R+ G+ ++L +G + + +++ + Sbjct: 17 SAGVEVVFGGPEARHAAAAMRLAPGEAVILADGSGTLGHGTVLAAAPDGVSVRLDAVAEE 76 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 + + + K +R +Q +VE+G+ A+ P + + Sbjct: 77 PAPTPALVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWAD 136 Query: 130 YTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 +AA+Q +P + + + L+++ D ++ E S ++ Sbjct: 137 TARAAAKQARRARVPAVRDHVSGTAVAGLVRDDDGGRLVLVLHEDAERGVSSVPTERLSA 196 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E E + V P+ LGP +LR+ TA AA+A++Q G W Sbjct: 197 AAEIAVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253 >gi|28493248|ref|NP_787409.1| 16S ribosomal RNA methyltransferase RsmE [Tropheryma whipplei str. Twist] gi|28572640|ref|NP_789420.1| hypothetical protein TW491 [Tropheryma whipplei TW08/27] gi|28410772|emb|CAD67158.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476289|gb|AAO44378.1| unknown [Tropheryma whipplei str. Twist] Length = 235 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 13/243 (5%) Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 + F+ L S + + R++ G+ I L + ++++ + Sbjct: 1 MSGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQ 60 Query: 64 --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 +I ++ + + + V + + + + ++ +VE+G+ I P + + N+ Sbjct: 61 PGTITARIMNLTLHKPNRVTVSLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSS 120 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 R + AA+Q P + E L++ + I+ + +SL L Sbjct: 121 SR--RWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSLAIILDPGSNTRLSSLGNL 178 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 +V +LIGPEGG EE T+ P + SLG L+S TA+VAA++LV Sbjct: 179 --FLQRKSVFLLIGPEGGITREEISTI---PGIC-CSLGIETLKSSTASVAALSLVNFFL 232 Query: 242 GDW 244 G W Sbjct: 233 GRW 235 >gi|283458058|ref|YP_003362669.1| hypothetical protein RMDY18_10170 [Rothia mucilaginosa DY-18] gi|283134084|dbj|BAI64849.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa DY-18] Length = 304 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 90/254 (35%), Gaps = 21/254 (8%) Query: 10 LFVDFP----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 ++ L G + + V R++ G+ I L +G L ++ + Sbjct: 53 FYISTEEYDALTPGATCVLGGSEGKHAL-VKRLELGERIDLGDGTGRRALGTVASINVDG 111 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 + R + + + + K R I+ + E+G+ + P + + Sbjct: 112 VSVQVQELREERSVPSIYLVQALAKDGRDLLAIETATELGVYGVLPWSADRSIVRWKGER 171 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-------NCQIVFADETC 172 + + +AA+Q +P +Y L++ + + ++ Sbjct: 172 ASKAHTKWQNTVTAAAKQSRRALIPEVYDLYNTADLVELIEEVAGSEQSAAVFILHEQAT 231 Query: 173 GSENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 ++L + + A + +L+GPEGG E + L LG +LRS TA Sbjct: 232 ERLSALARTLVEAENLPEEIYLLVGPEGGISDREVQLFTDAGAQLAL-LGDEVLRSSTAG 290 Query: 231 VAAMALVQAICGDW 244 AAM + + G W Sbjct: 291 SAAMCTLNVVLGRW 304 >gi|116074941|ref|ZP_01472202.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916] gi|116068163|gb|EAU73916.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916] Length = 261 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 13/234 (5%) Query: 4 HSHLKRLFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + L+RL + + GD+ HYL VLR++ GD++ + +G+ W +++ Sbjct: 1 MAELRRLLIAPTRLPTSGSVLVLEGDERHYLRRVLRLRPGDHLAVVDGQGHSWSAQLMEG 60 Query: 62 GKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQ 118 G+ + + Q + + + R +D +++ + E+G+ I+P+ + T Sbjct: 61 GEQLDLHQPLDQPLETASAPRPRLGLAVVGVRRGMDDVMRMACELGIDCIQPLSSQWRTP 120 Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGS 174 DR T A EQC+ L +P + + A ++ Sbjct: 121 QAEDRPDRWHTILKEAVEQCERLWMPELLSTVEAKDWWSMPAEGSLKALATTRQPDSVRF 180 Query: 175 ENSL---EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ L + +IP + I IGPE G+ + E++ + TPL +G ILR Sbjct: 181 DDWLACEQAALDHGNIPELWIAIGPEAGWTATEQDDAQRNGW-TPLEMGRTILR 233 >gi|15594703|ref|NP_212492.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31] gi|8928457|sp|O51333|RSME2_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 2; AltName: Full=16S rRNA m3U1498 methyltransferase 2 gi|2688252|gb|AAC66730.1| conserved hypothetical protein [Borrelia burgdorferi B31] Length = 243 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDEN-CLAGNFIIVKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118 Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 INNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAY 233 Query: 237 VQAICGDW 244 +A+ D+ Sbjct: 234 FKALLEDY 241 >gi|296130048|ref|YP_003637298.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM 20109] gi|296021863|gb|ADG75099.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM 20109] Length = 252 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 11/240 (4%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ 72 + + G + + V R G+ + + +G ++++ VG + +R V+ Sbjct: 14 ADVRAGGEYLLDGSEGRHAGVVQRRGPGERVDVVDGAGVRLVARVRAVGPEGVRLDVDEV 73 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126 + + + + K +R + I+ + E+G+ + P + + + R Sbjct: 74 VVEPAPEPRLVLVQALAKGDRDEMAIEAATEVGVDVVVPWQAERSIVVWRGERAQKSRAR 133 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH--AI 184 +A +Q +P + L E + L A+ Sbjct: 134 WIGTVRTATKQARRARMPQVEHALD-HAALVARVGAVVAAGGVAVVLHETAATPLRDIAL 192 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E + LGP +LR+ TA A+A++ G W Sbjct: 193 PAGGEVLVVVGPEGGISDREVAA-LTAAGAAVARLGPHVLRTSTAGPVALAVLADRLGRW 251 >gi|167837895|ref|ZP_02464778.1| hypothetical protein Bpse38_15507 [Burkholderia thailandensis MSMB43] Length = 156 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 9/150 (6%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + A VLR++ GD + LF+G G++ ++I + + Sbjct: 8 AAVPRFFVDAALQADATLPLPVDVARH-AQVLRLQPGDLLALFDGTGGQYRARIVEIDRR 66 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 67 GALARIDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 126 Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + + R ++ EQC +P + Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRVPDV 156 >gi|148239823|ref|YP_001225210.1| hypothetical protein SynWH7803_1487 [Synechococcus sp. WH 7803] gi|147848362|emb|CAK23913.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 251 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 8 KRLFVDFPLCIKTQGK----ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 +RL ++ Q + + YL VLR++ G + + +G + ++++ G Sbjct: 5 RRLLIEPARLRDAQALGRLGLTAAEARYLKRVLRLRPGAEVHVVDGCGQLFGTRLTPEG- 63 Query: 64 SIRFKVEYQSRSQT---KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-N 119 + +R QT Q + + ++ +D +++ + E+G+ ++P+ + + Sbjct: 64 ELSLDRGADARLQTLAAPQPRLGLAVALMRRG-MDEVMRMACELGVDHLQPLQAQRSVPQ 122 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSL 178 DR A EQC+ L P + P + + + +++ S + Sbjct: 123 AECRPDRWGVILREAVEQCERLWAPELLPVLSSDDWWNGPSGQSLRLIAVTRDQASTDLS 182 Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 L A I IGPEGG+ S+E + + + LG ILRS Sbjct: 183 TLLAAHGAGAGCCWIAIGPEGGWTSDELRSAAEAGWC-GVGLGDTILRS 230 >gi|311741359|ref|ZP_07715183.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303529|gb|EFQ79608.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 252 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 27/236 (11%) Query: 11 FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65 F+ L SG + + V RM EG+ + L +G I+ S+ Sbjct: 6 FIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDSL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V+ + V + + K+ R + + + + G I + Sbjct: 66 EGTVDSIDTAPVPTPRVSVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---------QIVFADE 170 + + + SAA+Q +P + P T L++ +V +E Sbjct: 126 APKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLVQELTGGRDGASSNAPTVLVLHEE 185 Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 S + + +V +L+GPEGG E + L TP+ LGP +LR+ Sbjct: 186 ATVS------IKDVPLADDVVLLVGPEGGIGDAELDRLKEAG-ATPIKLGPEVLRT 234 >gi|261414965|ref|YP_003248648.1| protein of unknown function DUF558 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371421|gb|ACX74166.1| protein of unknown function DUF558 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326218|gb|ADL25419.1| conserved hypothetical protein TIGR00046 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 241 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 17/237 (7%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67 R + PL ++ + V R G+ + L +G + I+ K+ Sbjct: 7 RFYC--PLISVGTIILDENESSHAVRVCRAVNGEILQLCDGLGHYADATITKADAKACEV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122 +V+ + K+ + + +K + L+ ++ + + +I + T Y+Q + Sbjct: 65 RVDTVEDAPLKRPRLNLGIACLKDDALEEVVFHAAQTETDSIIFLRTDYSQEPKNSDLKK 124 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R ++ + +Q + I P + LK++ + ++ D E L+ Sbjct: 125 TVRRAELKSLVSLKQSKKPWMTRIEGPIEFDKWLKDYQGD--LILCD--IDGERKLDINE 180 Query: 183 AIAHIPN---VAILIGPEGGYHSEEKETLH--SLPFVTPLSLGPRILRSDTAAVAAM 234 A N V +L+GPEGG+ E E + V L+LG LR+ TAA+ A+ Sbjct: 181 GAAENSNATPVTLLVGPEGGFSPREIEAIKTFKNGKVHLLNLGNTRLRARTAAIIAL 237 >gi|193216716|ref|YP_001999958.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma arthritidis 158L3-1] gi|193002039|gb|ACF07254.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1] Length = 220 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 20/233 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + + F + + V R+K D L N ++ + S+ G ++ Sbjct: 1 MYKFFCYHK--AGDAFILDDETCQHFRAV-RIK--DEHFLINFENEFYEC--SFKGPNLA 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122 ++ + + + IK + +QKSVE+G I P + Y + Sbjct: 54 IIIKKLTINNELPFKLIVAIPLIKQANFEMALQKSVELGASEIIPFYSDYCDVANKNITN 113 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R AA+Q +P ++ + +L N + + +E Sbjct: 114 KISRYLKIIKQAAQQSFRNIIPKLHTVHSFSEILTFECKNKYLAYENEKSSPFKP----- 168 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +++GPEGG++ E V +SL ILR++TA + ++ Sbjct: 169 ---DFAEAMLIVGPEGGFNFNEIAQAKQKN-VKIVSLTKSILRTETAIIYMLS 217 >gi|224533193|ref|ZP_03673793.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224511920|gb|EEF82321.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] Length = 243 Score = 148 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDQN-CLAGNFIIVKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAY 233 Query: 237 VQAICGDW 244 +A+ D+ Sbjct: 234 FKALLEDY 241 >gi|66811880|ref|XP_640119.1| hypothetical protein DDB_G0282549 [Dictyostelium discoideum AX4] gi|60468124|gb|EAL66134.1| hypothetical protein DDB_G0282549 [Dictyostelium discoideum AX4] Length = 314 Score = 148 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 102/290 (35%), Gaps = 66/290 (22%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-- 63 ++R F++ P SG Q+ +L LR+K G+ I +F+ + I +GK Sbjct: 1 MRRFFINNIPFVNGGSLLLSGQQHSHLKKSLRLKVGNVIEVFDSNGQNCQATIIDIGKNE 60 Query: 64 -SIRFKVE----------------------------------YQSRSQTKQSDVQYIFSP 88 I+ +++ + + ++ S Sbjct: 61 TKIKLQLDSNKALKKDNKNSIINENSNNNKEDIDEIINMNNNNDNNNIDININIDLATSL 120 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPV-------ITRYTQNTHYNMDRVRTYTISAAEQCDIL 141 K R ++MI+K E+G+ + + T +DR I +++Q Sbjct: 121 PKIQRAEWMIEKLTEIGVKNLFLLESEYSKSSPSSGSLTSNKLDRFERIIIESSKQSKNN 180 Query: 142 TLPFIYPPTTLEFLLKN--------WDHNCQIVFADETCGSENSLE---KLHAIAHIPNV 190 L I PP + LK+ I D + K + ++ + Sbjct: 181 HLMNIIPPQPYKQFLKDKFNIDTIKQSKYSHIFLFDPNGKPLPLIFNEIKENNNNNVRDT 240 Query: 191 AILIGPEGGYHSEEKETLHS-------LPFVTPLS-LGPRILRSDTAAVA 232 ILIGPEGG+ + E L F +S LG ILR +TAA+ Sbjct: 241 LILIGPEGGFTNNEINQLQQTIDKRNDSNFY--ISKLGNTILRMETAAIV 288 >gi|289523493|ref|ZP_06440347.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503185|gb|EFD24349.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 225 Score = 148 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 15/218 (6%) Query: 28 QYHYLAHVLRMKEGDNIL-LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 + H+L HV R + G+ L G+ + G+ + K + + + + Sbjct: 8 ESHHLVHVRRCRIGEEFEGLLEGRKLLLKIEGYEQGR-VIAKETGKLPIYERSRQISLLI 66 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQCDIL 141 + +K N + ++ + E+G+ I P++ + M+R R A + I Sbjct: 67 ALVKNNAFEDILNHATELGVAEIIPILAERSVVQLKGQLTKKMERWRRIIAEATKISGIG 126 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IAHIPNVAILIGPEGG 199 P ++ P + L + +++ + + L + I +V +GPEG Sbjct: 127 NPPLLHTPLKVLDLRDESLPSLRLL-----GALTDDAKPLGSVNIKQQEDVVFAVGPEGD 181 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + E L F+ P+SLGP ILR++TAA+A ++ + Sbjct: 182 WTEGEMAYFARLKFL-PVSLGPNILRANTAAIAGLSYI 218 >gi|126696059|ref|YP_001090945.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus str. MIT 9301] gi|126543102|gb|ABO17344.1| Uncharacterized protein conserved in bacteria [Prochlorococcus marinus str. MIT 9301] Length = 257 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 13/223 (5%) Query: 27 DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85 ++ HY+ V+R+K G I + NG+ W + I + +++ Q ++ + I Sbjct: 27 EETHYINKVMRIKNGKEIFIANGEGSLWKA-IKIKNDCLEIGQLKKPYLFQEQEIHLLGI 85 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----YNMDRVRTYTISAAEQCDIL 141 I + + +++ E+G+ I+P+ + N + + R + A EQ + L Sbjct: 86 AVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNSIINEAVEQSERL 145 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSENSLEKLHAIAHIPNVAIL---IG 195 P I + LK+ D+ ++ + +ET N + I IG Sbjct: 146 WKPSILNGMDIVEWLKSRDNQERVSISITREETLYDLNQWLRKQQEFVNRRGGIFWNVIG 205 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 PEGG+ S+E + + + + L ILR+ TA++ A +++ Sbjct: 206 PEGGWSSKEIDFFNRKN-IAFVKLSDTILRTSTASINASSILN 247 >gi|225549046|ref|ZP_03770021.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|226320424|ref|ZP_03795991.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|225370272|gb|EEG99710.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|226234177|gb|EEH32891.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|312147992|gb|ADQ30651.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 243 Score = 148 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAY 233 Query: 237 VQAICGDW 244 +A+ D+ Sbjct: 234 FKALLEDY 241 >gi|216264326|ref|ZP_03436318.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221217796|ref|ZP_03589264.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223888845|ref|ZP_03623436.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224533755|ref|ZP_03674343.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225550091|ref|ZP_03771051.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|226321674|ref|ZP_03797200.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|215980799|gb|EEC21606.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221192473|gb|EEE18692.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223885661|gb|EEF56760.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224513048|gb|EEF83411.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369203|gb|EEG98656.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|226232863|gb|EEH31616.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 243 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKID 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAY 233 Query: 237 VQAICGDW 244 +A+ D+ Sbjct: 234 FKALLEDY 241 >gi|326381611|ref|ZP_08203305.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis NRRL B-59395] gi|326199858|gb|EGD57038.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis NRRL B-59395] Length = 250 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 14/228 (6%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 +VD SG + + V R+ G++++L +G+ ++ V R V Sbjct: 6 FWVDEVPRAGDTTVLSGPEGRHAVTVTRIASGESVILGDGRGTTAECEVVDVAGKDRLTV 65 Query: 70 EY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + V + + K R + + E G+ AI P + + Sbjct: 66 RAGRVQFHTRAKPLVTIVQALPKAERSELAVDLMTEAGVDAIVPWQSSRSIARWSGSKAV 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSL 178 +++ R+ +AA+Q +P + T + L IV GS Sbjct: 126 KGVEKWRSTAATAAKQARRAWIPEVADLAGTTDVRDLAARVTAGGGIVALLHEDGSVPFR 185 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + P V +IGPEGG E L +L + + LGP +LR+ Sbjct: 186 SI--DFSDAPEVVFVIGPEGGLADSEIADLTALGGTSVV-LGPEVLRT 230 >gi|218249900|ref|YP_002374877.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] gi|218165088|gb|ACK75149.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] Length = 243 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 15/247 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 +K++ +D C+ D YH+L +V R+K+GD + + +S+I +G + Sbjct: 1 MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNILLKDKELRVSEIVKIGSN 59 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 60 FIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDI 119 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 N + R A +Q +P I +L ++ V S Sbjct: 120 SNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGMI 175 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 176 LSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAYF 234 Query: 238 QAICGDW 244 +A+ D+ Sbjct: 235 KALLEDY 241 >gi|79319632|ref|NP_001031165.1| methyltransferase [Arabidopsis thaliana] gi|49660073|gb|AAT68327.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gi|332194385|gb|AEE32506.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] Length = 210 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 7 LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F D P + G ++ ++A VLR+K+ D + LFNGK G I + K+ Sbjct: 53 LPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTG 112 Query: 66 RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120 + + + Q Q V F +K R D++I+K E+G ++ P++T + + Sbjct: 113 VDFIAQEDQKVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIIS 172 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 +DR+ + +AA+QC L + PP LL Sbjct: 173 ENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGTLLD 209 >gi|239917736|ref|YP_002957294.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC 2665] gi|281413769|ref|ZP_06245511.1| hypothetical protein MlutN2_00947 [Micrococcus luteus NCTC 2665] gi|239838943|gb|ACS30740.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC 2665] Length = 253 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 94/239 (39%), Gaps = 13/239 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRS 75 + G + + A +R+ G+ ++L +G + + +++ + Sbjct: 17 SAGVEVDFGGPEARHAAAAMRLAPGETVILADGSGTLGHGTVLAAAPDGVSVRLDAVAEE 76 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129 + + + K +R +Q +VE+G+ A+ P + + Sbjct: 77 PAPTPALVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWAD 136 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIA 185 +AA+Q +P + + + + +V ++ +S+ ++ Sbjct: 137 TARAAAKQARRARVPAVRDHVSGTAVAGLVRDDGGGRLVLVLHEDVEHGVSSVPA-ERLS 195 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +A+++GPEGG E E + V P+ LGP +LR+ TA AA+A++Q G W Sbjct: 196 EAAEIAVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253 >gi|88808873|ref|ZP_01124382.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805] gi|88786815|gb|EAR17973.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805] Length = 251 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 9/227 (3%) Query: 8 KRLFVDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 +RL ++ Q + + YL VLR++ G + + +G + ++++ G Sbjct: 5 RRLLIEPARLRSAQALSRIGLTVAEARYLKRVLRLRPGAEVHVVSGCGQLFSTRLTTEGD 64 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQ-NTH 121 + R +D +++ + E+G+ ++P+ + Sbjct: 65 LALDSELGALPYTVAAPHPPLGLAVSLMRRGMDEVMRMACELGVDRLQPLQAQRCVPQAE 124 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSLEK 180 Y DR A EQC+ L P + P + + N +++ + Sbjct: 125 YRPDRWGVILREAVEQCERLWAPELLPVLSTDDWWGNPSAEHLRLIAVTRDQACSDLSTL 184 Query: 181 LHAIAHIPNVAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 L +P+ + IGPEGG+ S E + + + LG ILRS Sbjct: 185 LAVTKSLPDGCWITIGPEGGWTSAELRSAAEAGWC-GVGLGDTILRS 230 >gi|332670855|ref|YP_004453863.1| hypothetical protein Celf_2349 [Cellulomonas fimi ATCC 484] gi|332339893|gb|AEE46476.1| protein of unknown function DUF558 [Cellulomonas fimi ATCC 484] Length = 256 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 13/240 (5%) Query: 17 CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRS 75 G + + V R G+ + + +G + + +VG + + +V+ Sbjct: 17 VPGGTYLLDGTEGRHAGVVQRRGPGERVDVVDGAGVRLVGVVEHVGAEGVHLRVDDVVVE 76 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRT 129 + + + K +R + I+ + E+G A+ P ++ + + R Sbjct: 77 PAPDVALVLVQALAKGDRDELAIEAATEVGADAVLPWQADRSIVVWRGERAAKSRARWLG 136 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEKLHAI 184 +AA+Q +P + L + +V +E ++ A Sbjct: 137 TVRAAAKQARRARVPEVGTAVDSRALAQRVRDAVAAGGGALVLHEEATVPVADVDLPAAG 196 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +++GPEGG +E L V + LGP +LR+ TA A+A++ G W Sbjct: 197 GPGRECLVVVGPEGGIGEDELARLVDAGAV-AVRLGPHVLRTSTAGPVALAILAQRLGRW 255 >gi|212716041|ref|ZP_03324169.1| hypothetical protein BIFCAT_00953 [Bifidobacterium catenulatum DSM 16992] gi|212661408|gb|EEB21983.1| hypothetical protein BIFCAT_00953 [Bifidobacterium catenulatum DSM 16992] Length = 265 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 20/247 (8%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K+GD + L +G+ + + + I +V S+ Sbjct: 21 ELNAGWKLTLPQSVRRHAIQAMRLKDGDELQLSDGRGLRIHAVLCDAQQGI-AQVSSFSK 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130 Q + + + + KT + I + ++G+ + P + + + R R Sbjct: 80 EQQPVTKLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSI-AKWKVGRTDKKWRQV 138 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHAIA 185 SA EQ P + + L+ C IV + + N LE+ A Sbjct: 139 LESATEQSRRSWTPELGECVASKQLVAICKRACVRGDMVIVLHQDATKTWNQLEESIAAL 198 Query: 186 HIP--------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V +++GPEGG E E+ + LG ILR+ TA A++L+ Sbjct: 199 SDKCLQDGRQRTVYVVVGPEGGIGDAEIESFTDAGAEVCV-LGSNILRASTAGPVALSLL 257 Query: 238 QAICGDW 244 G + Sbjct: 258 ARALGRF 264 >gi|309799316|ref|ZP_07693562.1| YqeU [Streptococcus infantis SK1302] gi|308117056|gb|EFO54486.1| YqeU [Streptococcus infantis SK1302] Length = 191 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 70/190 (36%), Gaps = 8/190 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +++ FV + + ++ V+R+KE D + L + L+++ V + Sbjct: 1 MQQYFVKGSAVSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEERQF 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120 VE + + V K ++L+++ QK E+G I V + Sbjct: 60 ELVEELTDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-NSLE 179 ++++ + AAEQ +P I L +IV A E E S Sbjct: 120 GKKVEKLEKIALGAAEQSKRNFVPSITLFEKKADFLAQLSQFDRIVVAYEESAKEGESAA 179 Query: 180 KLHAIAHIPN 189 + A+A + Sbjct: 180 LIQAVAGLEK 189 >gi|312149696|gb|ADQ29767.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 243 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKID 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 175 ILSKNESFDNFAKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAY 233 Query: 237 VQAICGDW 244 +A+ D+ Sbjct: 234 FKALLEDY 241 >gi|183601562|ref|ZP_02962932.1| hypothetical protein BIFLAC_02882 [Bifidobacterium animalis subsp. lactis HN019] gi|219683903|ref|YP_002470286.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium animalis subsp. lactis AD011] gi|241190939|ref|YP_002968333.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196345|ref|YP_002969900.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219168|gb|EDT89809.1| hypothetical protein BIFLAC_02882 [Bifidobacterium animalis subsp. lactis HN019] gi|219621553|gb|ACL29710.1| conserved hypothetical protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249331|gb|ACS46271.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250899|gb|ACS47838.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178681|gb|ADC85927.1| surface protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793928|gb|ADG33463.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 265 Score = 146 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 23/253 (9%) Query: 13 DFPLCIKT-----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 D PL + + + +R+KEGD + L +G + + KS Sbjct: 14 DAPLSSDELQTGWTLRLPEEVRRHAIGSMRLKEGDELQLSDGTGLRIQAVVDD-PKSGIV 72 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NMD 125 +V ++ + + I + K + I + ++G+ + P + D Sbjct: 73 RVLGFTKEERPVVRLGLIQALAKNGHDEQAIDMATQIGVDEVTPWQADRSIARFKAGRTD 132 Query: 126 R-VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGS----- 174 R +A EQ +P ++ T + +L N IV + + Sbjct: 133 RKWMQTLRAATEQSRRAFIPELHGMATSKQVLAMIRRDMVHGNLVIVLHQDANATWSDVE 192 Query: 175 ---ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E K V++++GPEGG +E E + + LG ILR+ A Sbjct: 193 RQVEELAAKCLDDGKERTVSVVVGPEGGISDQEVEVFAEAGALVCV-LGRNILRASAAGP 251 Query: 232 AAMALVQAICGDW 244 A+ L+ G + Sbjct: 252 VALGLLSRAIGRY 264 >gi|288916974|ref|ZP_06411346.1| protein of unknown function DUF558 [Frankia sp. EUN1f] gi|288351683|gb|EFC85888.1| protein of unknown function DUF558 [Frankia sp. EUN1f] Length = 257 Score = 146 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 35/239 (14%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDV 82 SG + + A V R++ G+ + + +G ++ VG+ + V + + Sbjct: 2 LSGAEGRHAATVRRLRSGERLDVTDGAGTALECEVGSVGRDELECVVLRRREVPAPVPRL 61 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K +R + ++ E G+ I P + + R AA+ Sbjct: 62 VVAQALAKGDRGELAVEMMTEAGVDEIVPWAASRCVVRWEGERGERSRARWDRTAREAAK 121 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-----CGSENSLE------------ 179 Q L P + T L + V ET G L+ Sbjct: 122 QSRRLVWPEVGGLVTTAALARRARQAALAVVLHETASTPVAGLARGLQVPRAVPAPAPPP 181 Query: 180 ----------KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +P V +++GPEGG EE L + V LGP +LR+ T Sbjct: 182 GIPGTPGMSGAAPGAPAVPEVLLVVGPEGGVSEEELGALTAAGAVAG-RLGPTVLRTST 239 >gi|225552469|ref|ZP_03773409.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371467|gb|EEH00897.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 243 Score = 146 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDEN-CLAGDFIIVKDAKIYHHLVNVRRIKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIIPKINFYNNFFYLPYSFCTTKYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 L K + + + I+IGPEG + E F + ILR+DTA + ++A Sbjct: 175 LLSKNESFGNFGKIGIIIGPEGCFSEPEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAY 233 Query: 237 VQAICGDW 244 +A+ D+ Sbjct: 234 FKALLEDY 241 >gi|329934636|ref|ZP_08284677.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces griseoaurantiacus M045] gi|329305458|gb|EGG49314.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces griseoaurantiacus M045] Length = 249 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 10/226 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 V+ G + + V R++ G++++L +G+ ++ R V Sbjct: 6 FLVEELRGAGPDFVLDGPEGRHAVSVKRLRPGEDVVLTDGRGRWAEGVVTAAEGKDRLLV 65 Query: 70 ---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120 +Q + + + K +R + ++ E+G+ I P + Sbjct: 66 GGLARVREEPPEQPRITVVQALPKGDRGELAVETMTEVGVDTIVPWQAARCITQWKGERG 125 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 + + R+ A +Q + P + T + + ++ Sbjct: 126 QKALAKWRSTAREAGKQSRRVRFPEVADAATSKQVAALLAKADLAAVLHSDFEYGSTPLA 185 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + +++GPEGG + E + LG +LR+ Sbjct: 186 TAELPAEGEIVLVVGPEGGVAAYELALFREAGAKAYV-LGRSVLRT 230 >gi|23335010|ref|ZP_00120248.1| COG1385: Uncharacterized protein conserved in bacteria [Bifidobacterium longum DJO10A] gi|23465438|ref|NP_696041.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium longum NCC2705] gi|189439461|ref|YP_001954542.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium longum DJO10A] gi|227545914|ref|ZP_03975963.1| protein of hypothetical function DUF558 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622038|ref|ZP_04665069.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132869|ref|YP_004000208.1| protein [Bifidobacterium longum subsp. longum BBMN68] gi|317482197|ref|ZP_07941219.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|322688978|ref|YP_004208712.1| hypothetical protein BLIF_0791 [Bifidobacterium longum subsp. infantis 157F] gi|322690947|ref|YP_004220517.1| hypothetical protein BLLJ_0757 [Bifidobacterium longum subsp. longum JCM 1217] gi|23326089|gb|AAN24677.1| conserved hypothetical protein with similarity to SdrD of S. coelicolor [Bifidobacterium longum NCC2705] gi|189427896|gb|ACD98044.1| Hypothetical protein BLD_0598 [Bifidobacterium longum DJO10A] gi|227213548|gb|EEI81397.1| protein of hypothetical function DUF558 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515229|gb|EEQ55096.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516988|emb|CBK70604.1| RNA methyltransferase, RsmE family [Bifidobacterium longum subsp. longum F8] gi|311773839|gb|ADQ03327.1| Hypothetical protein BBMN68_604 [Bifidobacterium longum subsp. longum BBMN68] gi|316916335|gb|EFV37735.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|320455803|dbj|BAJ66425.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460314|dbj|BAJ70934.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 265 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 90/247 (36%), Gaps = 20/247 (8%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K GD++ L +G + + ++ +V R Sbjct: 21 ELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQA-VMADPEAGLAEVVEVGR 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130 + + I + KT + I + ++G+ + P + + + R + Sbjct: 80 EPEPLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSI-AKWKVGRTDKKWNSV 138 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGS--------ENS 177 +A EQ P + + + ++ C IV + + Sbjct: 139 LDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQL 198 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E+ V++++GPEGG +E V+ + LG ILR+ TA A++L+ Sbjct: 199 VERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCV-LGRNILRAATAGPVALSLL 257 Query: 238 QAICGDW 244 + G + Sbjct: 258 SRVLGRY 264 >gi|291456688|ref|ZP_06596078.1| RNA methyltransferase family protein [Bifidobacterium breve DSM 20213] gi|291381965|gb|EFE89483.1| RNA methyltransferase family protein [Bifidobacterium breve DSM 20213] Length = 265 Score = 145 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 88/246 (35%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K GD++ L +G+ + + ++ +V R Sbjct: 21 ELHTGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGRGLRIHA-VMADPEAGLAEVVTVGR 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131 + + I + KT + + + ++G+ + P + + D+ Sbjct: 80 EPEPLTRLALIQALAKTGHDEQAVDMATQIGVDQVVPWQADRSIAKWKAGRTDKKWNAVL 139 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADET--------CGSENSL 178 +A EQ P + + ++ + IV + + Sbjct: 140 DAATEQARRAYKPQLEACANSKEVVAICRRACVHGDLVIVLHQDATDTWTGVEAKVAQLV 199 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 E+ + V++++GPEGG +E V+ + LG ILR+ TA A++L+ Sbjct: 200 ERTLSDGKPRTVSVVVGPEGGISEQEVADFTKAGAVSCV-LGSNILRAATAGPVALSLLS 258 Query: 239 AICGDW 244 G + Sbjct: 259 RALGRY 264 >gi|296454039|ref|YP_003661182.1| hypothetical protein BLJ_0887 [Bifidobacterium longum subsp. longum JDM301] gi|296183470|gb|ADH00352.1| protein of unknown function DUF558 [Bifidobacterium longum subsp. longum JDM301] Length = 265 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 90/247 (36%), Gaps = 20/247 (8%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K GD++ L +G + + ++ +V R Sbjct: 21 ELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQA-VMADPEAGLAEVVEVGR 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130 + + I + KT + I + ++G+ + P + + + R + Sbjct: 80 EPEPLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSI-AKWKVGRTDKKWNSV 138 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGS--------ENS 177 +A EQ P + + + ++ C IV + + Sbjct: 139 LDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVTQL 198 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E+ V++++GPEGG +E V+ + LG ILR+ TA A++L+ Sbjct: 199 VERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCV-LGHNILRAATAGPVALSLL 257 Query: 238 QAICGDW 244 + G + Sbjct: 258 SRVLGRY 264 >gi|158313945|ref|YP_001506453.1| 16S ribosomal RNA methyltransferase RsmE [Frankia sp. EAN1pec] gi|158109350|gb|ABW11547.1| protein of unknown function DUF558 [Frankia sp. EAN1pec] Length = 242 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 20/224 (8%) Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ-SDV 82 G + + A V R++ G+ + + +G ++ VG+ V + RS + Sbjct: 2 LGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRL 61 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136 + K +R + ++ E+G+ I P + + R AA+ Sbjct: 62 VVAQALAKGDRGELAVEMLTEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAK 121 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-----CGSENSLEKLHAIAHIP--- 188 Q P + P L + V ET G +L+ A+ +P Sbjct: 122 QSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTPLAGLARALQPAFAVEPVPAVE 181 Query: 189 ----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +++GPEGG E E L + V LGP +LR+ T Sbjct: 182 PEIGEILLVVGPEGGVADGELEALTAAGAVAG-RLGPTVLRTST 224 >gi|309801175|ref|ZP_07695304.1| RNA methyltransferase [Bifidobacterium dentium JCVIHMP022] gi|308222064|gb|EFO78347.1| RNA methyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 272 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+++GD + L +GK + + + I +V R Sbjct: 28 ELNAGWKLTLPASVRRHAIQAMRLEDGDELQLSDGKGLRIHAVLRDAQQGI-AEVLRFGR 86 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131 + + + KT + I + ++G+ + P + + DR R Sbjct: 87 ESQPTIRLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDRKWRQVL 146 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP 188 ++A EQ P + T + ++ C +V ++ ++ AIA + Sbjct: 147 VAATEQSRRSWSPELGECVTSKQVVAICRRACVHGDLVIILHQDATKTWIQIEQAIAGLS 206 Query: 189 N----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + +++GPEGG E + + LG ILR+ TA A++L+ Sbjct: 207 DKCLEDGRRRTIYVVVGPEGGISDAEVASFTEAGAEVCV-LGNNILRASTAGPVALSLLA 265 Query: 239 AICGDW 244 G + Sbjct: 266 RALGRF 271 >gi|229817685|ref|ZP_04447967.1| hypothetical protein BIFANG_02956 [Bifidobacterium angulatum DSM 20098] gi|229785474|gb|EEP21588.1| hypothetical protein BIFANG_02956 [Bifidobacterium angulatum DSM 20098] Length = 275 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 18/240 (7%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 + + +R+KEGD L +G+ + I +V R + Sbjct: 37 KLTLPPQVRRHAVQSMRLKEGDEFQLSDGRGLRLTVVLDDADNGI-AEVREFVREAQPVT 95 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYTISAAEQ 137 + + + K+ + I + ++G+ + P + + + DR + +A EQ Sbjct: 96 RLALVQALAKSGHDEQAIDIATQIGVDTVVPWQADRSIAKWKNGRTDRKWLSALQAATEQ 155 Query: 138 CDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCGSENSLEK--------LHAI 184 P + + + ++ N + IV + + S+E+ Sbjct: 156 SRRAFTPQLEDCVSSKQIVSMILRANVHGDLVIVLHQDATDTWESIERHVGHLADECLKD 215 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V +++GPEGG E + LG ILR+ TA A++L+ G + Sbjct: 216 GKPRTVYVVVGPEGGISEVEVSQFVEAG-AKSVVLGSNILRASTAGPVALSLLSRTLGRY 274 >gi|222100185|ref|YP_002534753.1| hypothetical protein CTN_1211 [Thermotoga neapolitana DSM 4359] gi|221572575|gb|ACM23387.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 222 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 20/236 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + LF P + + H++ V+R+KEG+ + +G+ + ++ + KS Sbjct: 1 MPHLFYGTP--RNGEIVFDEREAHHM-RVVRLKEGETVETTDGEGFSYTCVLTRLKKSEA 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 + + ++ + + R +I+K VE+G I +Q++ ++ Sbjct: 58 VAKILKIEKKEEEPSEKLKVVVPIGRWERTRLLIEKCVELGADEILLYRFERSQHS-VSL 116 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 ++ AA+QC P + +++N D + + + D GS N LE + Sbjct: 117 EKSLLVVREAAKQCRRYLFPKV-------KMVENLDFDEKAITLDPD-GSVNLLE----M 164 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 ++ I++GPEGG+ EKE L ++LG +ILR +TAA+ + + Sbjct: 165 DVSGSITIVVGPEGGFSEREKELLKQR--TILVNLGRKILRFETAAILTVGYIALR 218 >gi|171743048|ref|ZP_02918855.1| hypothetical protein BIFDEN_02173 [Bifidobacterium dentium ATCC 27678] gi|306822853|ref|ZP_07456229.1| RsmE family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|171278662|gb|EDT46323.1| hypothetical protein BIFDEN_02173 [Bifidobacterium dentium ATCC 27678] gi|304553485|gb|EFM41396.1| RsmE family RNA methyltransferase [Bifidobacterium dentium ATCC 27679] Length = 271 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+++GD + L +GK + + + I +V R Sbjct: 27 ELNAGWKLTLPASVRRHAIQAMRLEDGDELQLSDGKGLRIHAVLRDAQQGI-AEVLRFGR 85 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131 + + + KT + I + ++G+ + P + + DR R Sbjct: 86 ESQPTIRLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDRKWRQVL 145 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP 188 ++A EQ P + T + ++ C +V ++ ++ AIA + Sbjct: 146 VAATEQSRRSWSPELGECVTSKQVVAICRRACVHGDLVIILHQDATKTWIQIEQAIAGLS 205 Query: 189 N----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + +++GPEGG E + + LG ILR+ TA A++L+ Sbjct: 206 DKCLEDGRRRTIYVVVGPEGGISDAEVASFTEAGAEVCV-LGNNILRASTAGPVALSLLA 264 Query: 239 AICGDW 244 G + Sbjct: 265 RALGRF 270 >gi|283455941|ref|YP_003360505.1| hypothetical protein BDP_1039 [Bifidobacterium dentium Bd1] gi|283102575|gb|ADB09681.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1] Length = 265 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 18/246 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+++GD + L +GK + + + I +V R Sbjct: 21 ELNAGWKLTLPASVRRHAIQAMRLEDGDELQLSDGKGLRIHAVLRDAQQGI-AEVLRFGR 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131 + + + KT + I + ++G+ + P + + DR R Sbjct: 80 ESQPTIRLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDRKWRQVL 139 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP 188 ++A EQ P + T + ++ C +V ++ ++ AIA + Sbjct: 140 VAATEQSRRSWSPELGECVTSKQVVAICRRACVHGDLVIILHQDATKTWIQIEQAIAGLS 199 Query: 189 N----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + + +++GPEGG E + + LG ILR+ TA A++L+ Sbjct: 200 DKCLEDGRRRTIYVVVGPEGGISDAEVASFTEAGAEVCV-LGNNILRASTAGPVALSLLA 258 Query: 239 AICGDW 244 G + Sbjct: 259 RALGRF 264 >gi|51598615|ref|YP_072803.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi] gi|51573186|gb|AAU07211.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 243 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 12/223 (5%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 YH+L +V R+K+GD + + S+I +G + I+F + + ++ S Sbjct: 24 YHHLVNVRRLKKGDKLNILLKDKESRTSEIVKIGSNFIKFATNKIDKIEKNNFEISIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 +K ++D ++++ VE+G+ I + ++ +T R A +Q Sbjct: 84 SLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGNQ 143 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P I +L ++ V S L K + + + I+IGPEG + Sbjct: 144 IVPKINFYNNFFYLPYSFCTTKYYVAH----QSGMILSKNESFDNFSKIGIIIGPEGCFS 199 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E F + +LR+DTA + ++A +A+ GD+ Sbjct: 200 KPEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLAYFKALLGDY 241 >gi|89895873|ref|YP_519360.1| hypothetical protein DSY3127 [Desulfitobacterium hafniense Y51] gi|219670302|ref|YP_002460737.1| hypothetical protein Dhaf_4296 [Desulfitobacterium hafniense DCB-2] gi|89335321|dbj|BAE84916.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540562|gb|ACL22301.1| protein of unknown function DUF558 [Desulfitobacterium hafniense DCB-2] Length = 245 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 32/236 (13%) Query: 7 LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 + R + + G + +L VLR+ GD I+ F+ E+ + ++ + + S Sbjct: 1 MHRFKISE---LGNHVFWLKGPEREHLVRVLRLAVGDRIIGFDNTGAEYKAVVNKIEEQS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + + Q + + Y+ + K +++++IQK E+GM + P+ T+ Sbjct: 58 VTCGILEQDYPEVEAVTRIYLAAGLSKGEKMEWVIQKGTELGMAGLIPLRTKRAVMKLEG 117 Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 ++R + + AA+Q + P I+ T + L Q + E + Sbjct: 118 SKAADRVERWQKISGEAAKQSHRVREPQIFSVTDWQGLKALLPPTTQWLIPYENEKTRTL 177 Query: 178 LEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 L + +A++I +SLGPRI Sbjct: 178 SSVLKDFSSQEPIALIIGPEGGFEEGE----------VLWAQEHLNAQSISLGPRI 223 >gi|152991316|ref|YP_001357038.1| 16S ribosomal RNA methyltransferase RsmE [Nitratiruptor sp. SB155-2] gi|151423177|dbj|BAF70681.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 220 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 103/236 (43%), Gaps = 21/236 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSI 65 ++ FV P + G+ Y+Y+ V R ++G+ I + N +DG + +I V + Sbjct: 1 MQ--FVYHPKAGVQTLQIEGETYNYIFKVRRHRKGETIAIRNMEDGTLYWYEIVEVSRRE 58 Query: 66 RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122 + + + I+ + ++ + E+G+ I V +Q Sbjct: 59 AVLELRKSEKKEVEPKRFFHLIWCIVDPKTVEKTLPMLNEIGVSKITFVYCDRSQKNFKL 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++++R I++++QC L + +L+ ++K ++ + F +E +++E+ Sbjct: 119 KLEKLRKILINSSQQCGRSRLMELEILLSLDEVIKKYNDIVLVDFCEEKLSCTDNVER-- 176 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +LIGPEGG EE+ + + P +LRS+TAAVA + V Sbjct: 177 ---------VLIGPEGGVTKEERALFEKVKGLDT----PMVLRSETAAVATASKVM 219 >gi|330841125|ref|XP_003292554.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum] gi|325077196|gb|EGC30925.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum] Length = 297 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 107/282 (37%), Gaps = 64/282 (22%) Query: 8 KRLFVDF--PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 +R F++ + + SG Q +++ LR+K G+ I LF+ ++KI + K+ Sbjct: 3 RRFFINEFPSFLKGSILQLSGQQNNHVKT-LRLKVGNTIELFDSNGKNGVAKIIEINKNE 61 Query: 66 RFK----VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121 + +S + + + + S K R ++MI+K E+G+ + + T +++++ Sbjct: 62 TILQLENLGIESTNSEEINKIDIATSLPKLARAEWMIEKLSEIGISNLILLETEFSKSSP 121 Query: 122 Y-------NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----NWDHNCQ---IV 166 +DR I +++Q + I PP +L LK + +C+ + Sbjct: 122 QSSSITNNKLDRFERIVIESSKQSRNNQIMNIIPPVSLNQFLKDRFINQKEGDCKYSHVF 181 Query: 167 FADETCGSENSL--------------------------EKLHAIAHIPNVAILIGPEGGY 200 D G E L I ++ + IG EGG+ Sbjct: 182 IGDPYQGKELPLVLDDIKQEQQQLQQKQPQQPQQPQQQSNKAIIKKPKDILLFIGAEGGF 241 Query: 201 HSEEKETLHSLPFVTPLS-----------LGPRILRSDTAAV 231 E + +S +G ILR +TAA+ Sbjct: 242 SDREL-----YNIQSVVSNRNDSQLYLTKMGNNILRMETAAI 278 >gi|257055398|ref|YP_003133230.1| hypothetical protein Svir_13560 [Saccharomonospora viridis DSM 43017] gi|256585270|gb|ACU96403.1| conserved hypothetical protein TIGR00046 [Saccharomonospora viridis DSM 43017] Length = 243 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 15/245 (6%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----GKSIR 66 F+ L G++ H+ V R++EG+ + L +G+ G V ++ Sbjct: 2 FLVPSLPDTGFAVLEGEEAHHAVTVRRLREGERLALSDGRGGLADCVAHAVHPGRNPTVE 61 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------N 119 +VE V + K +R + ++ + E G+ A+ P + Sbjct: 62 LRVETTRHVSAPALRVTVAQALAKGDRGELAVETATEAGVDAVVPWRAARSVARWDDGPR 121 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + R +AA+Q +P + P T L + D SE+ ++ Sbjct: 122 GAKALAKWRATARAAAKQARRAWVPEVTEPMTTRQLAARIAETDLALVLD-GDASESFVD 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +++GPEGG EE+ T + LGP +LR+ TAA A+ + A Sbjct: 181 V--DFPEEGELLLVVGPEGGVAPEERATFVEAG-ARCVRLGPTVLRTSTAATVALGALGA 237 Query: 240 ICGDW 244 + W Sbjct: 238 LTARW 242 >gi|213692457|ref|YP_002323043.1| protein of unknown function DUF558 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523918|gb|ACJ52665.1| protein of unknown function DUF558 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458602|dbj|BAJ69223.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 265 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 91/247 (36%), Gaps = 20/247 (8%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L + + +R+K GD++ L +G + + ++ +V R Sbjct: 21 ELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQA-VMADPEAGLAEVVEVGR 79 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130 + + + I + KT + I + ++G+ + P + + + R + Sbjct: 80 EPEQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSI-AKWKVGRTDKKWNSV 138 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGS--------ENS 177 +A EQ P + + + ++ C IV + + Sbjct: 139 LDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQL 198 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +E+ V++++GPEGG +E V+ + LG ILR+ TA A++L+ Sbjct: 199 VERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCV-LGHNILRAATAGPVALSLL 257 Query: 238 QAICGDW 244 + G + Sbjct: 258 SRVLGRY 264 >gi|320010893|gb|ADW05743.1| protein of unknown function DUF558 [Streptomyces flavogriseus ATCC 33331] Length = 248 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 14/226 (6%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69 FV L + G + + V R+ G++++L +G+ + R V Sbjct: 6 FVVEQLPGGPEFVLDGPEGRHAVSVRRLNPGEDLVLTDGRGRWAEGVVRAAEGKDRLLVT 65 Query: 70 --EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 + + + K +R + ++ E G+ AI P Sbjct: 66 GLVSVHEEPAPAPRITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWKGDRGL 125 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLE 179 ++ + R+ A +Q + P + T + + ++ D GSE Sbjct: 126 KSLAKWRSTAREAGKQSRRVRFPEVANAMTTKQVAALLAGADFAGVLHEDRDSGSEPLAT 185 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + +++GPEGG +E + LGP +LR Sbjct: 186 A--ELPAEGTIVLVVGPEGGVSPQELAA-FAEAGAPAYRLGPSVLR 228 >gi|84496856|ref|ZP_00995710.1| hypothetical protein JNB_05015 [Janibacter sp. HTCC2649] gi|84383624|gb|EAP99505.1| hypothetical protein JNB_05015 [Janibacter sp. HTCC2649] Length = 247 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 11/220 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76 G + + A V R + G+ + L +G +++ V + + + E Sbjct: 18 AGDIVVLDGTEGRHAATVKRTRIGERLRLSDGVGRVVTGEVASVDRDRLTLRTESVEVVP 77 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHYNMDRVRTY 130 + + K +R D I+ + E+G+ + P + Sbjct: 78 EPSPRFVLVQALAKGDRDDQAIEAATELGVDEVVPWQASRSIVQWRGDRGAKAWAKWDAV 137 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 ++A +Q P + P T L E + L + + +V Sbjct: 138 LVAATKQSRRPRRPLLAPAATTAALADRIATGATAYVLHEDADA--PLAAI-TLPSDGDV 194 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 +++GPEGG +E +TL + + + LG +LRS +A Sbjct: 195 LVIVGPEGGIAPDELDTLKAAG-ASIVRLGDTVLRSSSAG 233 >gi|15605735|ref|NP_213112.1| hypothetical protein aq_165 [Aquifex aeolicus VF5] gi|6226333|sp|O66552|RSME_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|158428333|pdb|2EGV|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sam Ligand gi|158428334|pdb|2EGV|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sam Ligand gi|158428335|pdb|2EGW|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sah Ligand gi|158428336|pdb|2EGW|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sah Ligand gi|2982897|gb|AAC06516.1| hypothetical protein aq_165 [Aquifex aeolicus VF5] Length = 229 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 93/226 (41%), Gaps = 15/226 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77 + + V R+++ + + + + ++ K+ K I ++ + ++ Sbjct: 11 GNLLILREGEVKH-FRVRRIEKDEEFGVIH-EGKIYVCKVRREDKREISCEIVEELETKL 68 Query: 78 KQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132 D+ S + +D +++++ E+G+ P+I+ + + ++ + I Sbjct: 69 PPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVI 128 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 A +Q I P L L+ + N I+ + G + L A ++ Sbjct: 129 EAMKQSRRPIPMEIKKPVRLSDLIPESEEN--IILDNFYEGVKPKDVNLEA----KTYSV 182 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++GPEGG+ E + L F + L P LR++TA V+ ++++ Sbjct: 183 VVGPEGGFSKRESQILREKGF-KSVLLEPYTLRTETAVVSIVSILM 227 >gi|219685489|ref|ZP_03540307.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219673045|gb|EED30066.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 243 Score = 143 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 14/224 (6%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 YH+L +V R K+GD + + KD E + +I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRFKKGDKLNIL-LKDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISIFI 82 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 S +K ++D ++++ VE+G+ I + ++ +T R A +Q Sbjct: 83 SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGN 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I +L ++ V S L K + + + I+IGPEG + Sbjct: 143 QIVPKINFYNNFFYLPYSFCTTKYYVAH----QSGILLSKNESFDNFSKIGIIIGPEGCF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E F + +LR+DTA + ++A +A+ GD+ Sbjct: 199 SKPEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLAYFKALLGDY 241 >gi|224005044|ref|XP_002296173.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209586205|gb|ACI64890.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 299 Score = 143 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 76/276 (27%) Query: 38 MKEGDNILLFNGKDGEWLSKI------------SYVGKSIRFKVEYQSRSQTKQSDV--- 82 + E D I +F+G++GEWL+++ +GK + K E S + Sbjct: 18 LSEKDCIRVFDGRNGEWLARVRVSPQHQEDVNSIDMGKRTKRKREITSLMAECIVQLSLQ 77 Query: 83 -------QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT----------------- 117 +F P+K R+ MI+K E+G+G + PV++ + Sbjct: 78 TCQDDAPWVLFVPLKKQPRMKLMIEKCTELGVGRMIPVVSDRSAWMVSSNNDDLDVLYGG 137 Query: 118 QNTHYNM-DRVRTYTISAAEQCDILTLPFIYPPTTL------------------EFLLKN 158 + N+ D++ I AAEQC+ L++P I +L E + Sbjct: 138 NSDEENVFDKLELQAIEAAEQCERLSIPIITNEVSLGVQDDEANDRVWSVESLIEEWCRG 197 Query: 159 WDH------NCQIVFADETCG---SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL- 208 W+ +++ E L + A+ P VA L+GPEGG+ EE+ Sbjct: 198 WEERDVTADKRRLLVCRERGNDGTEGKVLPVIQALYDNPRVAFLVGPEGGWSPEEEAKFD 257 Query: 209 ---HSLPF----VTPLSLGPRILRSDTAAVAAMALV 237 V +SLG +LR++TA + A+ Sbjct: 258 STCTKYQGKDSPVQCISLGSSVLRAETACMMAVGAW 293 >gi|219684646|ref|ZP_03539589.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219672008|gb|EED29062.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 243 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 14/224 (6%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 YH+L +V R K+GD + + KD E + +I +G + I+F + + ++ Sbjct: 24 YHHLVNVRRFKKGDKLNIL-LKDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISIFI 82 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140 S +K ++D ++++ VE+G+ I + ++ +T R A +Q Sbjct: 83 SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGN 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I +L ++ V S L K + + + I+IGPEG + Sbjct: 143 QIVPKINFYNNFFYLPYSFCTTKYYVAH----QSGMLLSKNESFDNFSKIGIIIGPEGCF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E F + +LR+DTA + ++A +A+ GD+ Sbjct: 199 SKPEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLAYFKALLGDY 241 >gi|306821074|ref|ZP_07454692.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550910|gb|EFM38883.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 249 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 98/252 (38%), Gaps = 28/252 (11%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64 + R F+D + KT + +++ VLR+ D + + + + E++ KI + Sbjct: 5 MNRFFIDE-VAGKTNNIIDKEDIKHISKVLRLDIDDEVEIVDREKKEYIMKIVDIKNDNI 63 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121 KV + + V K ++L+ + + + + G+ I PV + T Sbjct: 64 CLEKVSSVDIQREDEIKVILYQGIPKGSKLEDICKNTTQAGIYQIIPVRFKRCVATDVND 123 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + R++ +A+QC +P I P + + ++K+ + N + E + + + Sbjct: 124 KKIQRLQKIMDESAKQCKRNEIPEIKMPLSFDEMMKDLEENDANILFYEDERNNTIRDFV 183 Query: 182 HAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 I + +E E + + LSLG RILR++ A Sbjct: 184 QRIREKKDMKRIGIIIGPEGGI---------DEKELEVMKK-GDIDILSLGNRILRTEIA 233 Query: 230 AVAAMALVQAIC 241 ++ A +++ Sbjct: 234 SIIAKSILTYEL 245 >gi|300858951|ref|YP_003783934.1| hypothetical protein cpfrc_01534 [Corynebacterium pseudotuberculosis FRC41] gi|300686405|gb|ADK29327.1| hypothetical protein cpfrc_01534 [Corynebacterium pseudotuberculosis FRC41] gi|302206652|gb|ADL10994.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis C231] gi|302331201|gb|ADL21395.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis 1002] gi|308276895|gb|ADO26794.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium pseudotuberculosis I19] Length = 256 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 91/238 (38%), Gaps = 16/238 (6%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRS 75 + + G + + V R+ G+ I L + + ++ + +VE Sbjct: 24 VGEIARLDGAEGRHAVSVKRIVAGERIKLIDAHGAYAEALVTETSGKDRLAARVEISETQ 83 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRT 129 V + K+ R + + + G+ AI P + ++ + R Sbjct: 84 SPVGPSVTVFQAIPKSERSELAVDLLTQGGVDAIVPWEAQRCVAKWSGTKREKSVQKWRA 143 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++AA+Q +P I P L LK + ++ ++ + +L + Sbjct: 144 AAVAAAKQSRRSAIPTIGSPINTSELALRLKTEGFDLVLMLHEDAQQAFAALP----LQQ 199 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A++IGPEGG EE L + LGP +LR+ +A + A+A + + W Sbjct: 200 ASSIALIIGPEGGIGQEESSELQAAG-ARLAKLGPEVLRTASAGIVALAAIGVLTSRW 256 >gi|116328412|ref|YP_798132.1| hypothetical protein LBL_1752 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331141|ref|YP_800859.1| hypothetical protein LBJ_1528 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121156|gb|ABJ79199.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124830|gb|ABJ76101.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 229 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 10/220 (4%) Query: 21 QGKASGDQYHYLAHVLRM-KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 Q + ++ +L LR+ E N+ + NG EW+ ++ + K Sbjct: 16 QFCLNKEEVSHL-KALRIFSEDKNLRILNGIGSEWIYEVKGNSRQGILKKTEVHVKPESI 74 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 S + + K NRL++++QK E+G+ + + +N+ R + A+ Q Sbjct: 75 SAI--ATAIPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSK 132 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 + LP ++ P +L L ++ ++ + G + N ++GPEGG Sbjct: 133 RIFLPEVFVPVSLNEFLNLQENLNLSIYQFDPKGKSEPKPEF-----FQNSIWIVGPEGG 187 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +E L + + G IL+ +TA + A +L + Sbjct: 188 FREKEIRLLREKN-ILGVKAGNAILKIETAGIFAASLFRY 226 >gi|227548789|ref|ZP_03978838.1| protein of hypothetical function (DUF558) [Corynebacterium lipophiloflavum DSM 44291] gi|227079119|gb|EEI17082.1| protein of hypothetical function (DUF558) [Corynebacterium lipophiloflavum DSM 44291] Length = 234 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 21/225 (9%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS-IRF 67 F+ +G+ G + + V R+ G+ I+L +G ++ + GK +R Sbjct: 5 YFIAPE---PARGELDGAEGRHAVTVKRIGVGERIMLVDGAGTAAEIAVAEIRGKDYLRG 61 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +V ++ + + + K R + + +V+ G AI P ++ T Sbjct: 62 EVLALTQVPQPTPRITVVQAIPKAERAELAVDLAVQGGADAIVPWLSNRTIARWPADKQG 121 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + + AA+Q +P + P T L + +V ++ + + Sbjct: 122 KQVAKWQAVAREAAKQSRRAWVPQVAEPVTTNQLRELVVGKQALVLHEDA------VAPI 175 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + V +++GPEGG EE E L + LGP +LR+ Sbjct: 176 SGVEFADEVFLIVGPEGGIGPEELEAL----GADAVKLGPEVLRT 216 >gi|308446109|ref|XP_003087098.1| hypothetical protein CRE_18396 [Caenorhabditis remanei] gi|308262620|gb|EFP06573.1| hypothetical protein CRE_18396 [Caenorhabditis remanei] Length = 410 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 17/218 (7%) Query: 42 DNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKS 101 + L + G+W + V + + K +R + ++++ Sbjct: 195 QAVELLDRTVGDWAEPAEAELVRSVLSLNEVRTEPEATPRVTLVQALAKGDRDERAVEQA 254 Query: 102 VEMGMGAIRPVITRYT----------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 E G+ + P + + + + A++Q +P + P + Sbjct: 255 TEFGVDRVVPWQAARSVSRWDGAGGAEKAAKGVAKWARIAREASKQSLRARVPEVGAPIS 314 Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHA-----IAHIPNVAILIGPEGGYHSEEKE 206 L + V A G E +L A + + +++GPEGG+ E + Sbjct: 315 SGELRAAASDPDRAVIALHPRG-ERTLSDWAAGFAAGTSRPAEILLVVGPEGGFSDAELD 373 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 L S + LG +LR+ +A A +A++ G W Sbjct: 374 ALESAGAEILV-LGTTVLRTSSAGPAGLAVLNVALGRW 410 >gi|163781828|ref|ZP_02176828.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1] gi|159883048|gb|EDP76552.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1] Length = 233 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 20/233 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFKVEYQSRSQT 77 TQ SG++ +L V R++ G+ + + ++ +L K+ K ++E + ++ Sbjct: 11 GTQFSISGEELKHLL-VRRVQIGEKVGII-WENKLYLCKVVEKNKKKALCEIEEEIETKI 68 Query: 78 KQSDVQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTY 130 + + + +KT + ++QK+ E+G + P+IT + + MDR + Sbjct: 69 PKLKLTLYQAVTIELKT--FETIVQKATELGAAELVPLITERSFRRREVILKKMDRWKKV 126 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-VFADETCGSENSLEKLHAIAHIPN 189 + A +Q I P LE L D N + F + L + +++ + Sbjct: 127 SKEAMKQSGRTYELSIREPALLEDLEPTSDLNILLDNFYEGKPIGSLELSSVESVSVVV- 185 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 GPEGG+ EE E L S F++ + L P +LR+DTAA + ++ + G Sbjct: 186 -----GPEGGFRREEGEHLRSKGFLS-VKLEPHVLRADTAATVGVGIIMNLAG 232 >gi|206896455|ref|YP_002247218.1| conserved surface protein, putative [Coprothermobacter proteolyticus DSM 5265] gi|206739072|gb|ACI18150.1| conserved surface protein, putative [Coprothermobacter proteolyticus DSM 5265] Length = 242 Score = 141 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 9/234 (3%) Query: 9 RLFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 R+FV+ L + Y+ VLR + I++F+G E+++ KS+ Sbjct: 5 RVFVENSLIDLDERVVTIDKSLQRYIEQVLRGAQDCKIVVFDGSGKEYITTYDIETKSLV 64 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---N 123 + + S K + + K +D +I ++G+ + P+IT T Sbjct: 65 IE-DVVSNCIQKSFSISLFQAVPKGTAMDDIIALCSQLGVDQVYPMITARTTVKQVGSNK 123 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 + R + + + + + I P L L ++ ++F E + N Sbjct: 124 LMRWQRIALESCKVGGFCSTTEIKQPLFLRDALALFNEADLVLFLYENAEA-NLRNYTTE 182 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I ++A+++GPEGG+ E E L T SLG I RS AA A+ + Sbjct: 183 IERANHIALVVGPEGGFDPSEAEELSKRAITT--SLGAVIFRSRWAASVAVMAI 234 >gi|300780715|ref|ZP_07090569.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532422|gb|EFK53483.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 235 Score = 141 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 21/225 (9%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67 D P G+ G + + V R++ G++I+L +G ++ + S+ Sbjct: 6 FLCDDP----AAGRLDGPEGRHAVTVKRIEPGEHIMLIDGSGRTAEISVTEITGKDSLVG 61 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +V + V + + K+ R + + +V+ G I P I+ T Sbjct: 62 EVVRVDDVPQPRPRVTVVQAIPKSERAELAVDLAVQGGADEIIPWISHRTIARWQGPKVA 121 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 N+++ + AA+Q +P + P T L + + V ++ S ++ Sbjct: 122 KNVEKWQATAREAAKQSRRAWVPEVREPVTTNQLAELVRGHAAYVLHEDASTSIKDIDL- 180 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + ++ +++GPEGG +E + + +S+GP +LR+ Sbjct: 181 ----DVDHLYLIVGPEGGIGQKELAGIPAA----SISMGPEVLRT 217 >gi|216263941|ref|ZP_03435935.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] gi|215979985|gb|EEC20807.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] Length = 243 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 14/223 (6%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 YH+L +V R+K+GD + + KD E + +I +G + I+F + + ++ Sbjct: 24 YHHLINVRRLKKGDKLNIL-LKDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISIFI 82 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDI 140 S +K ++D ++++ VE+G+ I + ++ + R A +Q Sbjct: 83 SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQSGN 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I +L ++ V S L K + + + I+IGPEG + Sbjct: 143 KIVPKINFYNNFFYLPYSFCTTRYYVAH----QSGMLLSKNESFDNFSKIGIIIGPEGCF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + E F T + +LR+DTA + ++A + + D Sbjct: 199 SNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240 >gi|112789921|gb|ABI21599.1| Smu10A [uncultured organism] Length = 185 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 13/189 (6%) Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118 + V + V + + K +R + ++ + E G+ A+ P Sbjct: 1 DLTLDVGQVVVEPSAAPRVVLVQALPKGDRGELAVELATEAGVDAVVPWQASRCVARWPD 60 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSE 175 R + AA+Q +P + P + + +V + S Sbjct: 61 AAKADKGRLRWQAAASEAAKQSRRYVVPEVLPAASTAGVAALVGQAALALVLHESATASL 120 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 S A+ ++ +++GPEGG +E ++ + + LGP++LR+ TAA A+ Sbjct: 121 AS----TALPATGDLVLIVGPEGGIAGDELAAFEAVGAI-AVRLGPQVLRTSTAAAVALG 175 Query: 236 LVQAICGDW 244 + + G W Sbjct: 176 AIGVLTGRW 184 >gi|226227302|ref|YP_002761408.1| hypothetical protein GAU_1896 [Gemmatimonas aurantiaca T-27] gi|226090493|dbj|BAH38938.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 240 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 12/223 (5%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 V + + ++ VLR++ G I + NG+ ++ + K+ Sbjct: 2 VADAIAVGATLALDEGAVRHI-RVLRLEAGAMIGVRNGQGSIGAGQLVRLSKTQAHVEIT 60 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD------ 125 ++ S + V + +R+ ++ +K+ E+G + RPV+ R +++ + Sbjct: 61 EAVSVSPLPAVHLLVPVADRDRMLWLAEKAAELGATSWRPVLWRRSRSVSPRGEGVNFQA 120 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +VR A Q + LP +P LE + +IV + E L A Sbjct: 121 KVRARMEGALAQSEGAWLPQPFPEANLERAVLAAPAGRRIVLDPD---GEPLTGALGAPL 177 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 P V I +GPEGG ++E L F SLGP ILR +T Sbjct: 178 TAP-VVIAVGPEGGLEADEIADLEQAGFQRR-SLGPTILRFET 218 >gi|222625729|gb|EEE59861.1| hypothetical protein OsJ_12443 [Oryza sativa Japonica Group] Length = 501 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 44/264 (16%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + + GD++ ++ VLR+ D + LF+G G I V K + Sbjct: 233 GEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLEDARLIA 292 Query: 79 QSDVQYIF-----SPIKTNR-------LDYM-------IQ-----------KSV------ 102 +Q+ S K ++ L+ IQ K Sbjct: 293 PDGIQWHVYAAFGSIQKVDKGGSDVKLLEDARLIAPDGIQWHVYAAFGESHKLCALTVNT 352 Query: 103 ---EMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 E+ + + + +DR++ ++A +QC + + PP + L Sbjct: 353 GSLEL-VVLHLFLQSDAHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVV 411 Query: 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219 + A + S L L + + +++GPEG + EE L + V P+ L Sbjct: 412 SQSKLAFVA--SAESPPLLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAV-PVGL 468 Query: 220 GPRILRSDTAAVAAMALVQAICGD 243 GP LR +TA ++ ++ + + D Sbjct: 469 GPCRLRVETATISLLSALM-LWSD 491 >gi|224534422|ref|ZP_03675000.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224514524|gb|EEF84840.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 243 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 12/222 (5%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 YH+L +V R+K+GD + + +S+I +G + I+F + + ++ S Sbjct: 24 YHHLVNVRRLKKGDKLNILLKDKELRVSEIVNIGSNFIKFATNKIDKIEKNNFEISMFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 +K ++D ++++ VE+G+ I + ++ +T R A +Q Sbjct: 84 SLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGNK 143 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P I +L ++ V S +L K + + I+IGPEG + Sbjct: 144 IVPKINFYNNFFYLPYSFCTTRYYVAH----QSGVTLSKNENFDNFSKIGIIIGPEGCFS 199 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + E F + +LR+DTA + ++A + + D Sbjct: 200 NSEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLACFKVLLED 240 >gi|117927993|ref|YP_872544.1| hypothetical protein Acel_0785 [Acidothermus cellulolyticus 11B] gi|117648456|gb|ABK52558.1| protein of unknown function DUF558 [Acidothermus cellulolyticus 11B] Length = 250 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 11/215 (5%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQ 76 + T+ G + + V R++ G+ + L +G ++S G + ++ + Sbjct: 18 VGTELVLDGAEGRHATKVRRLRPGEQVDLVDGTGLRCAGRVSRSDGGKLVVRLTARLVEP 77 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130 Q + + + +K + D ++ E+G+ I P + R + Sbjct: 78 VPQPQLIVVQALVKGDAADEAVRTMTEVGVDGIVPWTAARSVVRWDAGRAAAARHRWQQI 137 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 A +Q P I T + + + ET + + V Sbjct: 138 AREAGKQARRARFPEIAEVATTAEVCRRLRGAALGIVLLETASERVGGVTVPRAGDVVVV 197 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 GPEGG+ +E + S V + LGP +LR Sbjct: 198 V---GPEGGFRDDEVDAFRSAGAV-FVRLGPTVLR 228 >gi|224531913|ref|ZP_03672545.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511378|gb|EEF81784.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 243 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 12/222 (5%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 YH+L +V R+K+GD + + +S+I +G + I+F + + ++ S Sbjct: 24 YHHLVNVRRLKKGDKLKILLKDKELRMSEIVKIGSNFIKFATNKIDKIEKNNFEISIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDIL 141 +K ++D ++++ VE+G+ I + + + R A +Q Sbjct: 84 SLKGKKIDSVLRQIVEIGVSEINIINADRSVSKIDISNTSAKTLRFSKIIDEALKQSGNK 143 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P I +L ++ V S L K + + + I+IGPEG + Sbjct: 144 IVPKINFYNNFFYLPYSFCTTKYYVAH----QSGMLLGKNESFENFSKIGIIIGPEGCFS 199 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E F + ILR+DTA + ++A +A+ D Sbjct: 200 DSEISFFKEKDF-NFVRFNTPILRADTAIIYSLAYFKALLED 240 >gi|111115181|ref|YP_709799.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo] gi|110890455|gb|ABH01623.1| conserved hypothetical protein [Borrelia afzelii PKo] Length = 243 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 14/223 (6%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86 YHYL +V R+K+GD + + KD E + +I +G + I+F + + ++ Sbjct: 24 YHYLINVRRLKKGDKLNIL-LKDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISIFI 82 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDI 140 S +K ++D ++++ VE+G+ I + ++ + R A +Q Sbjct: 83 SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQSGN 142 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 +P I +L ++ V S L K + + + I+IGPEG + Sbjct: 143 KIVPKINFYNNFFYLPYSFCTTRYYVAH----QSGMLLSKNESFDNFSKIGIIIGPEGCF 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + E F T + +LR+DTA + ++A + + D Sbjct: 199 SNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240 >gi|183220665|ref|YP_001838661.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910767|ref|YP_001962322.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775443|gb|ABZ93744.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779087|gb|ABZ97385.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 226 Score = 139 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 103/226 (45%), Gaps = 18/226 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMK-EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73 P K + + ++ ++L LR++ E + I + +G+ G + + K + F+ E Sbjct: 12 PFFKKESIQLTKEELNHL-RALRLQSENNIIQIRDGEGGLYNYLYTPNSKDLVFQNE--E 68 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 K + + + K NRLD+ +QK E+G+ + ++ R++ +N++R Sbjct: 69 FVPRKTNRKKIAIALPKGNRLDFFLQKVTEIGLDEVIFLVFRHSIRKEFNLERAEKIVKE 128 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 AA Q + + + ++ + +VF ++ + IP + Sbjct: 129 AAAQSKQTEILNLS-IEPAKDWMETHKESL-VVFHP---FGKDIFQIQSLAGKIP----V 179 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSL--GPRILRSDTAAVAAMALV 237 IGPEGGYH++E+E + + L+L G +LR++T + A + + Sbjct: 180 IGPEGGYHADEEEWMEKNQ-IPKLTLPGG--VLRTETCGIVAASFL 222 >gi|117924870|ref|YP_865487.1| hypothetical protein Mmc1_1572 [Magnetococcus sp. MC-1] gi|117608626|gb|ABK44081.1| protein of unknown function DUF558 [Magnetococcus sp. MC-1] Length = 227 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 14/205 (6%) Query: 39 KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMI 98 + G+ + + + +++ G S+R + V + + R +++ Sbjct: 21 RVGELFTVCH-AGCFYRARLLADGHSMRVFATLSYSPEPPAPRV-LMQAMPNRERFLWIL 78 Query: 99 QKSVEMGMGAIRPVITRYTQNTH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 +K VE+G AI PVIT + + AA QC LP + P TLE Sbjct: 79 EKGVELGATAIYPVITEKSYHEDAPALAKQGGWVRILQRAARQCRRAVLPRVGEPLTLEQ 138 Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 ++ Q + S L V + +GPEGG+ ++ + V Sbjct: 139 AIEQGVGMAQWYL-------DLSPTPLLGEPLQGAVQLFVGPEGGWGEQDLAIFRARG-V 190 Query: 215 TPLSLGPRILRSDTAAVAAMALVQA 239 P +LGPR+LR++TAA+ A++ + A Sbjct: 191 APRNLGPRLLRTETAALMALSWIAA 215 >gi|195943133|ref|ZP_03088515.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a] Length = 231 Score = 138 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 17/238 (7%) Query: 7 LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63 +K++ +D C+ D YH+L +V R+K+GD + + KD E + +I +G Sbjct: 1 MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58 Query: 64 S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118 + I+F + + ++ S +K ++D ++++ VE+G+ I + + Sbjct: 59 NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKID 118 Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 N + R A +Q +P I +L ++ V S Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L K + + + I+IGPEG + E F + ILR+DTA + ++ Sbjct: 175 ILSKNESFDNFAKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSL 231 >gi|145219108|ref|YP_001129817.1| hypothetical protein Cvib_0293 [Prosthecochloris vibrioformis DSM 265] gi|145205272|gb|ABP36315.1| protein of unknown function DUF558 [Chlorobium phaeovibrioides DSM 265] Length = 247 Score = 138 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 31/233 (13%) Query: 10 LFVDF-PLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66 ++ L +T + GD++H++A VLR K GD + + +G ++ + K + Sbjct: 4 FYIPRGTLADETASLRIEGDEFHHIARVLRKKTGDRLRVTDGTGRVAEIEVVGLAKRWLE 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 +V +S + V S +K R D ++K+ E+G+G I P+I+ T + Sbjct: 64 GEVLSRSVVPRPSTRVTVALSMLKAPARFDMFLEKATELGVGGIIPMISHRTVSQPSGEK 123 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS----- 174 + R +SAA Q LP + P +L ++ +++ +E+ + Sbjct: 124 LAGKLQRWNNIILSAARQSKCFHLPELIGPLPFRSVLALEGYDNRLMPYEESSEAPRVNY 183 Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 +N+L + E + F T LSLG ILR Sbjct: 184 SGKNTLFLIGGEGGFTGEE-------------AEEARASGFTT-LSLGRSILR 222 >gi|224418688|ref|ZP_03656694.1| 16S rRNA m3U1498 methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 235 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 32/240 (13%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS 64 ++ F+ G+ YH+L H R K+ +++ L N +D + I+ + K Sbjct: 15 KMQ--FIIHKDAGNESLILDGEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKK 72 Query: 65 ---IRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSV----EMGMGAIRPVITRY 116 +R + + ++ SQ K +I+K++ E+ + I +Y Sbjct: 73 YATLRLESKLETPSQNPSKGHLIWAMIDPK------IIEKTLPFLNELNIYKISFFYAQY 126 Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +Q N++R++ ++ QC +TL I L+ +L+ + + + F + E Sbjct: 127 SQKNFKLNLERIQKILENSCMQCGRITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--E 184 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +SLE + IL+G EGG+ +E+E L S P T + ILRS+TA + AM+ Sbjct: 185 SSLE----------IPILVGAEGGFSPQERELLKSNPKYTAIH--SNILRSETATIYAMS 232 >gi|227874773|ref|ZP_03992926.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC 35243] gi|227844548|gb|EEJ54704.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC 35243] Length = 337 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 58/285 (20%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L T+ + +G + H+ + V R++ G+ + L +G+ +++ G +RF++ R Sbjct: 55 LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113 Query: 76 QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127 + + I + K R ++ + E+G + P ++R+ ++ Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173 Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161 + +SA +Q L + PP++ + Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233 Query: 162 NCQIVFADETCGSENSLEKLHAIAHIP----------------------NVAILIGPEGG 199 ++ E+ S+ P +A+++GPEGG Sbjct: 234 GGRVFVLHESASERLSVLLRAISREAPHEPGGELSGAGNLGAGNPGGTMEIAVVVGPEGG 293 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E E ++ + LG +LR TA A+A++QA G W Sbjct: 294 ITEGELEGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 337 >gi|269976809|ref|ZP_06183784.1| protein involving differentiation [Mobiluncus mulieris 28-1] gi|269935006|gb|EEZ91565.1| protein involving differentiation [Mobiluncus mulieris 28-1] Length = 337 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 104/285 (36%), Gaps = 58/285 (20%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L T+ + +G + H+ + V R++ G+ + L +G+ +++ G +RF++ R Sbjct: 55 LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113 Query: 76 QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127 + + I + K R ++ + E+G + P ++R+ ++ Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173 Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161 + +SA +Q L + PP++ + Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233 Query: 162 NCQIVFADETC--------------------GSENSLEKLHAIAHIP--NVAILIGPEGG 199 ++ E+ G + E L A +A+++GPEGG Sbjct: 234 GGRVFVLHESASERLSVLLRAISREAPHEPGGELSGAENLGAGNPGGTMEIAVVVGPEGG 293 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 E E ++ + LG +LR TA A+A++QA G W Sbjct: 294 ITEGELEGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 337 >gi|224373445|ref|YP_002607817.1| 16S ribosomal RNA methyltransferase RsmE [Nautilia profundicola AmH] gi|223589351|gb|ACM93087.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 219 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 30/233 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65 ++ FV FP Q +GD++ YL V R+K+ + + + N KD ++ KI + K Sbjct: 1 MQ--FVYFP-NPGVQITLTGDEHKYLFKVRRVKKNELVKIRNLKDDYLYIYKIEAINKKE 57 Query: 66 RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122 VE + + + I ++ + E+G+G I + Y+Q Sbjct: 58 AILSLVEKKLSPNKPEKFFHLAWCIIDPKNIEKALPSLNEIGVGKITFIYCDYSQKNFKL 117 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++R+ I++ +QC +L I + + + +++ + F + Sbjct: 118 KLERLTKILINSCQQCGRSSLMEIEFLDSSDEFFQKYNNFSALDFDGKEIKC-------- 169 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHS----LPFVTPLSLGPRILRSDTAAV 231 + LIGPEGG+ E++ F ILRS+TAAV Sbjct: 170 --GFYSSYPFLIGPEGGFSDNERKYFKEKFRLKGF---------ILRSETAAV 211 >gi|68535674|ref|YP_250379.1| hypothetical protein jk0602 [Corynebacterium jeikeium K411] gi|68263273|emb|CAI36761.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 259 Score = 138 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 92/236 (38%), Gaps = 26/236 (11%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 + P+ + + + +G + + + V R++ G+ +++ +G S++G +V Sbjct: 10 IPEPVVVGDRFRLTGAEAKHAS-VKRLEVGEGLVVTDGAARAVQG--SFLGD-ATVEVID 65 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDR 126 T V + + K++R + + +V+ G I P I ++ + Sbjct: 66 ILELPTPHPRVTVVQAIPKSDRAELAVDLAVQAGADRIVPWAARRAIAKWDGKEAKAHAK 125 Query: 127 VRTYTISAAEQCDILTLPFIYP----PTTLEFLL--------KNWDHNCQIVFADETCGS 174 +AA+Q L +P + P L +L + +V +E Sbjct: 126 WDNAARAAAKQSRRLQIPEVTQLVRTPQELARVLGMGEASAGNDASAVRVLVLHEEATEP 185 Query: 175 ENSLEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + A +A+++GPEGG EE L TP+ LGP +LR+ Sbjct: 186 LPAAVTAAVGSASDAGATEIALVVGPEGGISPEELAEFEQLG-ATPVRLGPEVLRT 240 >gi|253826777|ref|ZP_04869662.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT 98-5491] gi|313142210|ref|ZP_07804403.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510183|gb|EES88842.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT 98-5491] gi|313131241|gb|EFR48858.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 220 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 32/239 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS- 64 ++ F+ G+ YH+L H R K+ +++ L N +D + I+ + K Sbjct: 1 MQ--FIIHKDAGNESLILDGEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKY 58 Query: 65 --IRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSV----EMGMGAIRPVITRYT 117 +R + + ++ SQ K +I+K++ E+ + I +Y+ Sbjct: 59 ATLRLESKLETPSQNPSKGHLIWAMIDPK------IIEKTLPFLNELNIYKISFFYAQYS 112 Query: 118 QN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++R++ ++ QC +TL I L+ +L+ + + + F + E+ Sbjct: 113 QKNFKLNLERIQKILENSCMQCGRITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--ES 170 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 SLE + IL+G EGG+ +E+E L S P T + ILRS+TA + AM+ Sbjct: 171 SLE----------IPILVGAEGGFSPQERELLKSNPKYTAIH--SNILRSETATIYAMS 217 >gi|5802843|gb|AAD51805.1|AF170561_1 SdrD [Streptomyces coelicolor A3(2)] Length = 216 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 70/198 (35%), Gaps = 13/198 (6%) Query: 37 RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY---QSRSQTKQSDVQYIFSPIKTNR 93 R++ G++++L +G+ + R V +Q + + + K +R Sbjct: 3 RLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVPGGVREEPAEQPRITVVQALPKGDR 62 Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 + ++ E+G+ AI P + + + R A +Q + P + Sbjct: 63 GELAVETMTEVGVDAIVPWAASRCITQWKGERGLKALGKWRATAREAGKQSRRVRFPDVA 122 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 + + + E+ S +L A ++ +++GPEGG +E Sbjct: 123 DAASSKQVASLLAAADFAAVLHESGDVPLSDAELPAS---GDIVLVVGPEGGVSPDELAL 179 Query: 208 LHSLPFVTPLSLGPRILR 225 P LG +LR Sbjct: 180 FAEAG-ADPYRLGRSVLR 196 >gi|242310102|ref|ZP_04809257.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523399|gb|EEQ63265.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 220 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 20/235 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65 ++ F+ + K G+ YH++ R K+ +++ L N KD ++ I+ + K Sbjct: 1 MQ--FIIHKNAGEATLKLEGETYHHIFQSRRTKKSESLHLRNLKDSNLYIYNITNLSKKD 58 Query: 66 RFKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122 S++ I++ I ++ + E+ + I Y+Q Sbjct: 59 ATLTLQSSQNTPLKNPPKGHLIWAMIDPKNIEKTLPFLNELNLQKITFFYAEYSQKNFKL 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N++R++ ++ EQC +TL I L+ +L+ + + + F G E L Sbjct: 119 NLERIQRILENSCEQCGRITLLEIEVLENLQEVLEKYPNAGVLDF-----GGEEPKCSLE 173 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IL+G EGG+ +E+E L + P T S ILRS+TAA+ A+A + Sbjct: 174 -------IPILVGTEGGFSKKEREALKNNPKYTATSC--NILRSETAAIYAIARI 219 >gi|255030926|ref|ZP_05302877.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes LO28] Length = 167 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 12/156 (7%) Query: 100 KSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 KS E+G R V+ + ++R++ AAEQ +P ++ + + Sbjct: 9 KSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFK 68 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLH 209 L+ H ++ A E E L ++ +V + GPEGG + + L Sbjct: 69 ELMFGHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLCIFGPEGGISEK-ELLLL 127 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 LGPRILR++TA + ++ D Y Sbjct: 128 EEANAKLAGLGPRILRTETAPLYVLSAASFYF-DLY 162 >gi|289642694|ref|ZP_06474834.1| protein of unknown function DUF558 [Frankia symbiont of Datisca glomerata] gi|289507524|gb|EFD28483.1| protein of unknown function DUF558 [Frankia symbiont of Datisca glomerata] Length = 279 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 76/257 (29%), Gaps = 50/257 (19%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79 + G + + A V R++ G+ + + +G+ + + I VE + + Sbjct: 6 ELTLVGAEGRHAATVRRLRPGERLDVTDGRGVVAECTVVRCRRDEIDCAVERRVVHPARL 65 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133 + + + K +R + ++ E+G+ I P + + DR Sbjct: 66 PRLVVVQALAKGDRGELAVELMTEVGVDEIVPWAASRSVVRWAGERGARAHDRWSATARE 125 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------------------- 174 AA+Q + P + PT + V E Sbjct: 126 AAKQSRRVFWPRVTAPTDTDAAAARLTAAELAVVLHEDAAEPLTRVLAAATTAATGSFAT 185 Query: 175 -----------------------ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211 L + +++GPEGG E E + Sbjct: 186 ATAAAGPPATTASVAGSATAGLTATRAPALPDAVPAAEIVVVVGPEGGITDAELEVFTAA 245 Query: 212 PFVTPLSLGPRILRSDT 228 P LGP +LR+ T Sbjct: 246 GG-RPSRLGPTVLRTST 261 >gi|270283937|ref|ZP_05965237.2| RNA methyltransferase, RsmE family [Bifidobacterium gallicum DSM 20093] gi|270277731|gb|EFA23585.1| RNA methyltransferase, RsmE family [Bifidobacterium gallicum DSM 20093] Length = 261 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 23/252 (9%) Query: 13 DFPLCIKT-----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 D PL T + + +R+K GD + L NGK + + +S Sbjct: 10 DSPLNGDTLHEGWVIELPDAVRRHAMGAMRLKNGDALQLSNGKGLRINASVLD-DQSGSV 68 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NMD 125 +V + + I + KT + I + ++G I P + D Sbjct: 69 QVRSFETEPEPRIRLALIQALAKTGHDEQAIDMATQIGADEIIPWQADRSIARFKQGRTD 128 Query: 126 R-VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNW---DHNCQIVFADETCGSENSL 178 R + ++A EQ +P + +E + + ++ DET + Sbjct: 129 RKWQQTLVAATEQSRRAWIPKLGECVRSSGVEAICRRACVHGDVVVVLHQDETTHWSHVE 188 Query: 179 EKLHAI-------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 E + A+ V +++GPEGG +E + + LG ILR+ +A Sbjct: 189 EAVQAMMNRTFEDERARTVYVVVGPEGGISEQEVAQFAKAGALCCV-LGSTILRAASAGP 247 Query: 232 AAMALVQAICGD 243 A+AL+ G Sbjct: 248 VALALLSRTTGR 259 >gi|300933260|ref|ZP_07148516.1| hypothetical protein CresD4_04275 [Corynebacterium resistens DSM 45100] Length = 251 Score = 136 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 22/220 (10%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + + + +G + + A V R+K+G+ +++ +G D + V + + +V T Sbjct: 20 VGQRFQLTGAEAKH-ADVKRLKDGEALVITDGSDQAVRA----VWRGPQVEVTEVLAIAT 74 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTI 132 + V + + K+ R + + V+ G I P I +++ + Sbjct: 75 PRPFVTVVQAIPKSERAELAVDLMVQAGADRIIPWESARTIAKWSGKEEKARAKWENAAR 134 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCGSENSLEKLHAIAH 186 SAA+Q L +P + P + + + + +V + S + + Sbjct: 135 SAAKQARRLRIPEVTSPARSVSQIASLLGDAKGLQRQVLVLHESATAGLKSRDF-----N 189 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 V ++IGPEGG EE L L + LGP +LR+ Sbjct: 190 CDEVVLVIGPEGGVSPEEIAQLAELGG-EAVVLGPEVLRT 228 >gi|298346299|ref|YP_003718986.1| hypothetical protein HMPREF0573_11173 [Mobiluncus curtisii ATCC 43063] gi|304389936|ref|ZP_07371893.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236360|gb|ADI67492.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC 43063] gi|304326829|gb|EFL94070.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 300 Score = 135 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 38/263 (14%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ 76 + G + H+ A V R++ G+ + + +G +++ +R ++ + + Sbjct: 32 EGEEISIVGAEAHH-ATVKRLRLGEVVDVVDGLGWRAGAEVVAAQNSRLRLRLLADAVAD 90 Query: 77 T-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHYNMDRVR 128 + I + K R ++ +VEMG + P + ++ R Sbjct: 91 PVPPLRLTLIQALAKEKRDLQALESAVEMGAWRVIPWGATRSVSRWDTVTKRAKGREKWR 150 Query: 129 TYTISAAEQCDILTLPFIYP-----------------------PTTLEFLLKNWDHNCQI 165 +SA +Q L + T+ ++ Sbjct: 151 NLAVSAMKQSRQARLAEVSEYLESGGDIVPEPQGAETQSVKPAANTIFSEVEAMVQGGTA 210 Query: 166 VFADETCGSENSLEKLHAIAH----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 VF +E+ + L +A ++A+++GPEGG + E + P LGP Sbjct: 211 VFVLHELATEHLAQMLIPLARAGQTPEDIAVIVGPEGGITAPELTAFTAAG-ARPALLGP 269 Query: 222 RILRSDTAAVAAMALVQAICGDW 244 +LR +A AA+A++Q+ G W Sbjct: 270 TVLRCSSAGPAALAVIQSQLGSW 292 >gi|306818068|ref|ZP_07451799.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304649032|gb|EFM46326.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 342 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 102/290 (35%), Gaps = 63/290 (21%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L T+ + +G + H+ + V R++ G+ + L +G+ +++ G +RF++ R Sbjct: 55 LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113 Query: 76 QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127 + + I + K R ++ + E+G + P ++R+ ++ Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173 Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161 + +SA +Q L + PP++ + Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233 Query: 162 NCQIVFADETCGSENSLEKLHAIAHIP---------------------------NVAILI 194 ++ E+ S+ P +A+++ Sbjct: 234 GGRVFVLHESATERLSVLLRAISREAPHEPGGELSGAGNLGAGNLGAGNLGGTMEIAVVV 293 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG E E ++ + LG +LR TA A+A++QA G W Sbjct: 294 GPEGGITEGELEGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 342 >gi|150020162|ref|YP_001305516.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho melanesiensis BI429] gi|149792683|gb|ABR30131.1| protein of unknown function DUF558 [Thermosipho melanesiensis BI429] Length = 226 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 16/211 (7%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDVQYIFSP 88 + V R+KEGD + +GK GE+L KI + K F +E + + ++S++ Sbjct: 23 HFKTV-RIKEGDIVKSTDGKGGEFLVKIEKIKKKKSFGTILESKYIEKDEKSNLVLFAPS 81 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAEQCDILTLPFIY 147 K RL ++I+KSVE+G+ I T+Y+ +++ ++A+QC P + Sbjct: 82 GKWERLRWLIEKSVELGVDKIYITKTKYSNRDYRDKEEKISLVIRNSAKQCIRYHFPE-F 140 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 + + + K N + EN E +H PN + ++GPEGG+ +E + Sbjct: 141 KFISFKEIEKYASINTYFL----DFEGENIPEIIH-----PNTSFIVGPEGGFSEDE-KK 190 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++ F TP+ LG + LR +TAA ++ + Sbjct: 191 FLNVNF-TPVVLGKKTLRFETAAFVFLSYLS 220 >gi|315657188|ref|ZP_07910072.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492291|gb|EFU81898.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 300 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 99/262 (37%), Gaps = 38/262 (14%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQT 77 + G + H+ A V R++ G+ + + +G +++ +R ++ + + Sbjct: 33 GEEISIVGAEAHH-ATVKRLRLGEVVDVVDGLGWRAGAEVVAAQNSRLRLRLLADAVADP 91 Query: 78 -KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY--TQNTHYNMDRVRT 129 + I + K R ++ +VEMG + P ++R+ ++ R Sbjct: 92 VPPLRLTLIQALAKEKRDLQALESAVEMGAWRVIPWGATRSVSRWDTVAKRAKGREKWRN 151 Query: 130 YTISAAEQCDILTLPFIYP-----------------------PTTLEFLLKNWDHNCQIV 166 +SA +Q L + T+ ++ V Sbjct: 152 LAVSAMKQSRQARLAEVSEYLESGGDIVPEPQGAETQSVKPAANTIFSEVEAMVQGGTAV 211 Query: 167 FADETCGSENSLEKLHAIAH----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 F +E+ + L +A ++A+++GPEGG + E + P LGP Sbjct: 212 FVLHEVATEHLAQMLIPLARAGQTPEDIAVIVGPEGGITAPELTAFTAAG-ARPALLGPT 270 Query: 223 ILRSDTAAVAAMALVQAICGDW 244 +LR +A AA+A++Q+ G W Sbjct: 271 VLRCSSAGPAALAVIQSQLGSW 292 >gi|312196048|ref|YP_004016109.1| hypothetical protein FraEuI1c_2200 [Frankia sp. EuI1c] gi|311227384|gb|ADP80239.1| protein of unknown function DUF558 [Frankia sp. EuI1c] Length = 251 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 80/226 (35%), Gaps = 11/226 (4%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69 F PL +G + + A V R++ G+ + + +G +++ V + + +V Sbjct: 7 FHLAPLPAVDVFTLAGPEGRHAATVRRLRVGERLDVTDGAGHALRCEVAAVRRDELDCRV 66 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYN 123 ++ + + + + K +R + ++ E+G+ I P V+ + + Sbjct: 67 LDRAHTPAPVPRLVVVQALAKGDRGELAVEMLTEVGVDEIVPWSAARSVVRWDGERGARS 126 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLH 182 R AA+Q P + + +V + L Sbjct: 127 RGRWVASAAEAAKQARRARWPLVAELAGTVAVRDRLAVAGLGLVLHESAAEPLAGLPAGR 186 Query: 183 A--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 A + +++GPEGG EE + LGP +LR+ Sbjct: 187 AGDWPPAGEIVLVVGPEGGISDEELAGFGKAG-ARSVRLGPTVLRT 231 >gi|307700645|ref|ZP_07637673.1| RNA methyltransferase [Mobiluncus mulieris FB024-16] gi|307614175|gb|EFN93416.1| RNA methyltransferase [Mobiluncus mulieris FB024-16] Length = 342 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 63/290 (21%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L T+ + +G + H+ + V R++ G+ + L +G+ +++ G +RF++ R Sbjct: 55 LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113 Query: 76 QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127 + + I + K R ++ + E+G + P ++R+ ++ Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173 Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161 + +SA +Q L + PP++ + Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233 Query: 162 NCQIVFADETCGSENSLEKLHAIAHIP---------------------------NVAILI 194 ++ E+ S+ P +A+++ Sbjct: 234 GGRVFVLHESASERLSVLLRAISREAPHEPGGELSGAGNLGAGNLGAGNLGGTMEIAVVV 293 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 GPEGG E ++ + LG +LR TA A+A++QA G W Sbjct: 294 GPEGGITEGELAGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 342 >gi|315654888|ref|ZP_07907793.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC 51333] gi|315490849|gb|EFU80469.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC 51333] Length = 300 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 99/263 (37%), Gaps = 38/263 (14%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ 76 + G + H+ A V R++ G+ + + +G +++ +R ++ + + Sbjct: 32 EGEEVSIVGAEAHH-ATVKRLRLGEVVDVVDGLGWRVGAEVVAAQNSRLRLRLLADAVAD 90 Query: 77 T-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY--TQNTHYNMDRVR 128 + I + K R ++ +VEMG + P ++R+ ++ R Sbjct: 91 PVPPLRLTLIQALAKEKRDLQALESAVEMGAWRVIPWGATRSVSRWDTVSKRAKGREKWR 150 Query: 129 TYTISAAEQCDILTLPFIYP-----------------------PTTLEFLLKNWDHNCQI 165 +SA +Q L + T+ ++ Sbjct: 151 NLAVSAMKQSRQARLAEVSEYLESGGDIVPEPQGAETRSVKSAANTIFSEVEAMVQGGTA 210 Query: 166 VFADETCGSENSLEKLHAIAH----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 VF +E+ + L +A ++A+++GPEGG + E + P LGP Sbjct: 211 VFVLHEVATEHLAQMLIPLARAGQTPEDIAVIVGPEGGITAPELTAFIAAG-ARPALLGP 269 Query: 222 RILRSDTAAVAAMALVQAICGDW 244 +LR +A AA+A++Q+ G W Sbjct: 270 TVLRCSSAGPAALAVIQSQLGSW 292 >gi|330837775|ref|YP_004412416.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta coccoides DSM 17374] gi|329749678|gb|AEC03034.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta coccoides DSM 17374] Length = 263 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 30/248 (12%) Query: 9 RLF-VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 R++ + ++ S + YL VLR EG + WL + VG S Sbjct: 2 RIYKLPVSFSGESFFLLSPKESRYLVSVLRFPEGKTFSGRDASGTPWLLTLQKVGASYGL 61 Query: 68 KVEYQSRSQTKQ-------------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114 + + + + +K +L+ +I+++ EMG+ I PV + Sbjct: 62 RCTPATEDDATENAADAMPLYTGFLPAIHLFPCLLKGKKLEGVIRQACEMGVRRITPVHS 121 Query: 115 RYT--------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + + R A +Q + + P + W + + Sbjct: 122 AHCVASFVDDEKRNAGKIQRFEAQVREAVQQSGSRIITEVTPAIPFSDIPTAWGSSGPGL 181 Query: 167 FADE------TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220 F + + G +L + H +A P +AI+IGPEGG EE L + F + L Sbjct: 182 FFHQGQNDALSFGQRIALIRNHVLAGAP-LAIVIGPEGGLSPEECALLEASGF-HGVLLK 239 Query: 221 PRILRSDT 228 ILR++T Sbjct: 240 TNILRAET 247 >gi|24214688|ref|NP_712169.1| hypothetical protein LA_1988 [Leptospira interrogans serovar Lai str. 56601] gi|45657777|ref|YP_001863.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195677|gb|AAN49187.1|AE011372_3 conserved hypothetical protein [Leptospira interrogans serovar Lai str. 56601] gi|45601017|gb|AAS70500.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 230 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 10/217 (4%) Query: 24 ASGDQYHYLAHVLRM-KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82 + ++ +L LR+ E N+ + NG EW+ +I FK + S V Sbjct: 19 LNKEEISHL-KALRIFSEDKNLRVLNGIGTEWIYEIPGNSVQGIFKKTITHLKSERVSAV 77 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 + K NRL++++QK E+G+ + + +N++R + A+ Q + Sbjct: 78 --ATAIPKGNRLEWLLQKGTELGLTHFYFLNFEQSDRKDFNLNRAQKIVEEASIQSKRIF 135 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP I P +L+ L + ++ + G + N +IGPEGG+ Sbjct: 136 LPEIVSPVSLKEFLISQKKQNLSIYRLDPQGEWKLKPEF-----FQNAIWIIGPEGGFRE 190 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +E L + + +G IL+ +TA V +L + Sbjct: 191 KEILLLQERN-IPGIKVGDTILKIETAVVFTASLFRY 226 >gi|15639268|ref|NP_218717.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025510|ref|YP_001933282.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum SS14] gi|3322550|gb|AAC65264.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018085|gb|ACD70703.1| hypothetical protein TPASS_0276 [Treponema pallidum subsp. pallidum SS14] gi|291059678|gb|ADD72413.1| RNA methyltransferase superfamily [Treponema pallidum subsp. pallidum str. Chicago] Length = 294 Score = 133 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 35/263 (13%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 +K+L + + SG +HY+ V R + GD L ++ + +S + R Sbjct: 16 MKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTR 75 Query: 67 FKVEYQSRSQT----KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTH 121 + + + Q + + + D +++ + E+G I P+ + Sbjct: 76 SLILHCTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTARIIPIRGERSLIRDE 135 Query: 122 YNMD--RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN------WDHNCQIVFADETCG 173 + R++ A +Q + +L L + +I +++ G Sbjct: 136 KDTQHARLQRIVREARQQSGSAVNTRVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVG 195 Query: 174 S---------------------ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212 E + V + +G EGG+ E+ TLH Sbjct: 196 GSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAEGGFSDTEERTLHDAH 255 Query: 213 FVTPLSLGPRILRSDTAAVAAMA 235 F PL +LR +TAA+ A+A Sbjct: 256 FA-PLHFRTNVLRVETAALYALA 277 >gi|315282369|ref|ZP_07870795.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii FSL S4-120] gi|313613989|gb|EFR87707.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii FSL S4-120] Length = 140 Score = 133 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Query: 113 ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172 + + ++R++ AAEQ +P ++ + + L+ + H ++ A E Sbjct: 1 MKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDYVIAAYEES 60 Query: 173 GSENSLEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E L I +V + GPEGG +E L + LGPRILR++T Sbjct: 61 AREGEDSALASLFQTIKPGQSVLCIFGPEGGISEKELVLLQEVN-AKLAGLGPRILRTET 119 Query: 229 AAVAAMALVQAICGDWY 245 A + ++ D Y Sbjct: 120 APLYVLSAASFYF-DLY 135 >gi|26553614|ref|NP_757548.1| hypothetical protein MYPE1610 [Mycoplasma penetrans HF-2] gi|26453620|dbj|BAC43952.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 234 Score = 133 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 13/235 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64 +++ F+ + + + LR+ D I + + KI + KS Sbjct: 1 MRKFFIR---IKNNKVWFDDNDLKH-FKSLRINNEDIIDCIDQNNSLVKVKIKSLDPIKS 56 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 +++ S K D+ IK + + K E+ + I PV Y+Q + N Sbjct: 57 EIIEIKENKLSN-KPYDITCFLGVIKKQNFELAVVKLSELNIKKIIPVYFDYSQRNINLN 115 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLH 182 R+ + +QC+ + I P T ++ K D NC + + SE K+ Sbjct: 116 YQRLDILIKESQKQCNRIAKLEIDEPITFNDMVNKLNDFNCNFIAYEHQDLSE--WNKIK 173 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++ N++ ++GPEGG+ +E L + L L IL+++TA++ +++ Sbjct: 174 NNSNLNNISYIVGPEGGFSGKEINELKNK--CIFLKLTNTILKTETASIYLASIL 226 >gi|203287810|ref|YP_002222825.1| uncharacterized protein conserved [Borrelia recurrentis A1] gi|201085030|gb|ACH94604.1| uncharacterized protein conserved [Borrelia recurrentis A1] Length = 242 Score = 133 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 13/214 (6%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFS 87 YHYL +V R++ GD + + GK S+I + IRF + + ++ S Sbjct: 24 YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFEIDIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 +K +LD +++ VE+G+ +I V + N R A +Q Sbjct: 84 NLKGRKLDLSLRQVVEIGVNSINIVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGNA 143 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P I + + N + ++ + L I+ + ILIGPEG + Sbjct: 144 QIPSINFYNDFFSIPYSSSVNYYVAYS-----KGDFLHLGENISVFGKIGILIGPEGCFS 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + L F + ILR+DTA V A+A Sbjct: 199 KLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231 >gi|270263052|ref|ZP_06191322.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13] gi|270042740|gb|EFA15834.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13] Length = 166 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ PL + S D +++ VLRM G + LF+G + + ++I V K Sbjct: 2 RIPRIYHPQPLIDNAEIALSEDAANHVGRVLRMSAGQTLQLFDGSNRVFNAEIVRVDKKS 61 Query: 65 IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123 ++ ++ Q + ++ + ++++ IQKS+E+G+ I P+ + + Sbjct: 62 VQVQLGAGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPLFSERC-GVKLD 120 Query: 124 MDRVRT 129 +R+ Sbjct: 121 GERLAK 126 >gi|15827256|ref|NP_301519.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium leprae TN] gi|221229734|ref|YP_002503150.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium leprae Br4923] gi|13092805|emb|CAC30134.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932841|emb|CAR70719.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 257 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 13/231 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68 +VD T GD+ + V R++ G+ ++L +G G + G+ + + Sbjct: 6 FYVDALPDTGTVAVVGGDEGFHAVTVRRIRPGEELVLGDGVGGLAHCLVERAGRDGLYAR 65 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122 V + + K R + I+ + E G A R V + Y Sbjct: 66 VLGHWTVAPGLPPATVVQALPKAERSELAIEMATEAGADAFVAWQSDRCVASWYGVRVDK 125 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENS 177 + R R +AA Q +P + T LL+ + + + Sbjct: 126 GLRRWRAVARAAARQSRRAHIPSVDGVLTTAALLQRIRDEVAAGATVLALHESATDRLSD 185 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + ++A ++ +L+GPEGG +E L V + LGP +LRS T Sbjct: 186 VFADISVAQANSLVLLVGPEGGIAPDEIAALTEAGAV-AVRLGPTVLRSST 235 >gi|260578252|ref|ZP_05846168.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] gi|258603554|gb|EEW16815.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 43734] Length = 270 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 93/247 (37%), Gaps = 37/247 (14%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 + P+ + + + +G + + + V R++ G+ +++ +G S++G +V Sbjct: 10 IPEPVVVGDRFRLTGAEAKHAS-VKRLEVGEGLVITDGATRAVQG--SFLGD-ATVEVAD 65 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDR 126 T V + + K++R + + +V+ G I P I ++ + Sbjct: 66 ILELPTPNPRVTVVQAIPKSDRAELAVDLAVQAGADRIVPWAARRAIAKWDGKEAKAHAK 125 Query: 127 VRTYTISAAEQCDILTLPF----IYPPTTLEFLLKNWDHN---------------CQIVF 167 +AA+Q L +P + P L +L + +V Sbjct: 126 WDNAARAAAKQSRRLQIPEVTQLVRSPQELARVLGLGEAGTAASGVGGGSGTSTVRVLVL 185 Query: 168 ADETCGSENSL--------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219 +E + + + A +A+++GPEGG EE L TP+ L Sbjct: 186 HEEATEPLPAAVSAAVNGDDANGSEAAATEIALVVGPEGGISPEELAEFEQLG-ATPVRL 244 Query: 220 GPRILRS 226 GP +LR+ Sbjct: 245 GPEVLRT 251 >gi|99034296|ref|ZP_01314342.1| hypothetical protein Wendoof_01000858 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 141 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67 RL+V+ L + Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++ + + + Sbjct: 5 RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127 + ++ Q + ++ + +K+ L+ +++++ EMG+ I+ + T T + N+ R Sbjct: 65 TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124 Query: 128 RTYTISAAEQCDILTLP 144 + I AAEQ +++P Sbjct: 125 KLQAIEAAEQSGRISIP 141 >gi|300788464|ref|YP_003768755.1| ribosomal RNA small subunit methyltransferase E [Amycolatopsis mediterranei U32] gi|299797978|gb|ADJ48353.1| ribosomal RNA small subunit methyltransferase E [Amycolatopsis mediterranei U32] Length = 250 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 15/229 (6%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS--IR 66 F+ + + G++ + A V R++ G+ ++L +G + G+ + Sbjct: 9 FLAASVPASGRAILDGEEARHAATVRRLRAGERLVLSDGAGAMARCVVEGVQAGREPLLT 68 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126 VE + V + K +R + ++ + E G AI P + + R Sbjct: 69 LAVEEHWTEEPPGLRVLVAQALAKGDRGELAVELATEAGADAIVPWRAARSVAKWEDGGR 128 Query: 127 VRT-------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 +AA+Q +P + P T L + E+ E + Sbjct: 129 GEKALARWRATARAAAKQARRAHVPEVAEPVTTGE-LAGLVATMSLAIVLESDVPERLTD 187 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +V +++GPEGG EE L + LG +LR+ T Sbjct: 188 L--PLPDAGDVLLVVGPEGGITDEELRLLRDAG-ARAVRLGTTVLRTST 233 >gi|86739973|ref|YP_480373.1| 16S ribosomal RNA methyltransferase RsmE [Frankia sp. CcI3] gi|86566835|gb|ABD10644.1| protein of unknown function DUF558 [Frankia sp. CcI3] Length = 230 Score = 131 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 16/209 (7%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93 V R++ G+ + + +G ++ + I V + + + + + K +R Sbjct: 2 VRRLRPGEPVDVTDGLGRAVECEVVAARRDEIDCAVRRRVAAAAPSPRLVVVQALAKGDR 61 Query: 94 LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147 + ++ E+G+ I P + +R A++Q L P + Sbjct: 62 GERAVEMLTEVGVDEIVPWSAARSVARWEGVRGVRARERWVRAAEEASKQSHRLHWPVVG 121 Query: 148 PPTTLEFLLKNWDHNCQIVFADETC-----GSENSLEKLHAIAHIPNVA---ILIGPEGG 199 L+ +++ V E G S+E +A + A +++GPEGG Sbjct: 122 ELAGLKEVVERVRAAALAVLLHEEATIPLVGLARSVEVSERVAPAASAAELVLVVGPEGG 181 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E TL + LG +LR+ T Sbjct: 182 VSELELATLGEAGAIVS-RLGSTVLRTST 209 >gi|163784445|ref|ZP_02179323.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1] gi|159880282|gb|EDP73908.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1] Length = 202 Score = 131 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 12/194 (6%) Query: 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQ 79 D+ H+ V R+K I + + +L+K+ V K +E + ++T Sbjct: 15 LILDKDEAHHAF-VKRIKPDYFIRVNDLNGHIYLAKVLEVSKKHLKAKILEELTTNETHL 73 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----NMDRVRTYTISAA 135 Y+ +P + +++D +I E+G+ PVI + + +++ + T+++ Sbjct: 74 KITLYLCAPNQLSKVDELIPFITELGVYRFIPVICKNSAVKEKDILKKIEKWKKITLNSI 133 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 +QC+ L I P L+ + D ++F + +N K + + V ++IG Sbjct: 134 KQCERLYPVIIEKPIKLKDI--PSDAELNVLFYERE---KNETLKNYCQLSVKKVNVVIG 188 Query: 196 PEGGYHSEEKETLH 209 EGG+ +E L Sbjct: 189 NEGGFTQDEVSILA 202 >gi|256396163|ref|YP_003117727.1| 16S ribosomal RNA methyltransferase RsmE [Catenulispora acidiphila DSM 44928] gi|256362389|gb|ACU75886.1| protein of unknown function DUF558 [Catenulispora acidiphila DSM 44928] Length = 247 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 11/214 (5%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77 + + G + + A V R+ G+ + L G+ ++ K + V R+ Sbjct: 18 GARVRLDGAEGRHAALVRRLTAGERVDLAGGQGVVAECVVAVAHKDWLELDVRDVVRTPA 77 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131 + V + + K +R + ++ E+G+ A+ P + + +++ R Sbjct: 78 PEPRVTVVQALPKGDRGETAVETMTEIGVDAVVPWAASRSIVQWKGERGEKALNKWRATA 137 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 AA+Q P + + + + Q + E E L L + +V Sbjct: 138 REAAKQSRRAWWPTVRSLHSTAEVAELLAGADQALVLHEDA--ETPLAGLDVVRQG-SVV 194 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++IGPEG +E +GP +LR Sbjct: 195 LVIGPEGSISPQELAA-FEAAGARAYKMGPTVLR 227 >gi|269792239|ref|YP_003317143.1| hypothetical protein Taci_0625 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099874|gb|ACZ18861.1| protein of unknown function DUF558 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 239 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 37/231 (16%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLR---------MKEGDNILLFNGKDGEWLSKIS 59 RLF + + Q +L VLR ++EG ++L ++S Sbjct: 11 RLF-------PGRYRLDPQQARHLVKVLRCYTGALVEGLEEGRRVIL----------RLS 53 Query: 60 YVGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117 + K V Q S V + +K ++ D +++ S E+G+ I PVI + Sbjct: 54 VSNGVVEAKEVVDQEDLGGYASRVVLLVGLLKADQWDQVLRFSCELGVDQIVPVICERSV 113 Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + H + R R + + QC L P I +L L + ++ Sbjct: 114 PRPDDWHRKVQRYRRILLESTRQCGALRPPTIGDLVSLRELDPSGLPELRL-----GAFL 168 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +VA+ +GPEG + E E L + F P+SLGPR+LR Sbjct: 169 ADGAVPIGEVVPCGDVALAVGPEGDWAPWEAEALIGMGF-RPVSLGPRVLR 218 >gi|291279753|ref|YP_003496588.1| hypothetical protein DEFDS_1371 [Deferribacter desulfuricans SSM1] gi|290754455|dbj|BAI80832.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 236 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 25/249 (10%) Query: 7 LKRL---FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVG 62 + RL +++ C K Y+Y+ +VLR+K G+ I+++ K G + KI + Sbjct: 1 MHRLSSLYLEMDRC-DDLIKLGDKGYNYVRNVLRLKVGEQIVVYTKKSKGMY--KIKNIN 57 Query: 63 KS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT- 120 K I + E + + + + I S +K LD++I+K E+G + V T + Sbjct: 58 KKSIEIERENEILYKKPEYEFVVIQSAMKREYLDFVIEKYGELGATKVIIVKTDNSVVKI 117 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + ++R++ I+ A Q D LP I +++ L N + +I F + EN Sbjct: 118 ENKTLERLKKLMINGAMQADYDYLPEIEYHDSIKNL--NVNTKDKICFYE----KENKKV 171 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP--FVTPLSLGPRILRSDTAAVAAMALV 237 L I+ +V+I IGPEGG++ ++ L+ F++P++ G IL+++TA V ++ Sbjct: 172 FLDRIS--KSVSIFIGPEGGFNDDDISILNEKGFRFLSPIN-G--ILKAETAGVLFAGMI 226 Query: 238 QAI--CGDW 244 +++ CG + Sbjct: 227 KSLIDCGRY 235 >gi|257457364|ref|ZP_05622535.1| RNA methyltransferase family protein [Treponema vincentii ATCC 35580] gi|257445286|gb|EEV20358.1| RNA methyltransferase family protein [Treponema vincentii ATCC 35580] Length = 257 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 14/235 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---K 63 +K+ ++ SG + YL V RM+EGD + + G I + K Sbjct: 1 MKQFIIEREPDANGMLSLSGKDFVYLIKVRRMREGDVLHALLPQSGAAEMVIDLINTVKK 60 Query: 64 SIRFKVEYQSRSQT---KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 +R + + + +++ + +K ++ D +I+++ E G+ A+ PVI ++ Sbjct: 61 ELRLRRQTAPLGASRTAPAAELILLQWVLKGSKTDTIIRQATEAGICAVLPVIGEFSVAK 120 Query: 121 HYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGS 174 N ++R R A +Q + P L + LK VFA + S Sbjct: 121 KQNPAQLERFRRIIKEARQQSGSPVDTAVTEPAPLAAVLNTLKALIPGAGTVFAMCSENS 180 Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E S+ +A P+ + + IG EGG E L F T + +LR++T Sbjct: 181 EASIGFHQLLAAKPSCIVLAIGAEGGISPAEAAVLRGAAFQT-VHFKTNVLRAET 234 >gi|167740222|ref|ZP_02412996.1| hypothetical protein Bpse14_19318 [Burkholderia pseudomallei 14] Length = 148 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116 ++ V +++D++I+K+VE+G+ A+ P+ T Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135 Query: 117 TQNTHYNMDRVR 128 + + R Sbjct: 136 GERADKRVSHWR 147 >gi|301165446|emb|CBW25017.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 230 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 96/235 (40%), Gaps = 12/235 (5%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + R F++ L + + SGD +L V+R+K+ + ILL NGK + ++ + Sbjct: 1 MRAVY-IDREFLENEL--GQEIQLSGDSARHLIKVIRIKKNETILLLNGKGQKCEARSTR 57 Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 + + + + + K + + +++ + E+G+ I Y+Q Sbjct: 58 IDRREIDLEILSINNISDDRKLSLFLGLPKKDAFESIVKMASEIGIKNIYLYRAEYSQQD 117 Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 DR+ SA Q + K++ + V T S ++ Sbjct: 118 IEFTDRLLKLEESAIIQSNNPFRINFLKVDNFSDAFKDYSN----VVHFSTFSSTDA--- 170 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++ ++IGPE G+ +E++ + V+ + L I+R+ TA +A + Sbjct: 171 -DSLKFDSETLLVIGPEAGFSQDEEDQIKGFENVSTVKLDTYIMRAPTA-LAVAS 223 >gi|224437230|ref|ZP_03658207.1| 16S rRNA m3U1498 methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313143692|ref|ZP_07805885.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128723|gb|EFR46340.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 229 Score = 128 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 98/235 (41%), Gaps = 15/235 (6%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKSI 65 ++ F+ P Q + S D + Y+ R++ I + N +D + I+ + K Sbjct: 1 MQ--FLYQPNAGDFQVEISNDDFTYIIKARRLQLDSVIKVRNLQDKKLYTYTIAEIKKKS 58 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HY 122 K+ Q ++ S + +++ I ++ + E+G+ I ++Q Sbjct: 59 ALLTKISEQDSPKSHFSPLHLLWAIIDPKVIEKTLPFLNELGISRISFFYAEFSQRQFSL 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N+ R++ IS+ +QC + L + + + + + F E N + Sbjct: 119 NLQRMQKILISSCQQCGRIDLMELEVLKDFDCVCERYTPFYAFDFGGEDIRQHNP---FN 175 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMAL 236 A +V +++G EGG+ E++ F ++L ILRS++A+V +L Sbjct: 176 EGAENGSVRVMVGAEGGFSQRERQR-----FAKIITLNDTLILRSESASVFLASL 225 >gi|332686843|ref|YP_004456617.1| ribosomal RNA small subunit methyltransferase E [Melissococcus plutonius ATCC 35311] gi|332370852|dbj|BAK21808.1| ribosomal RNA small subunit methyltransferase E [Melissococcus plutonius ATCC 35311] Length = 141 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + R+ + AAEQ LP + T + L+ + + Q++ A E + Sbjct: 4 KKRVAKTKRLNKIALEAAEQSHRQWLPSVKLLKTGKELVALFQNYDQVIVAYEESAKQGD 63 Query: 178 LEKL------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 L + + GPEGG+ +E T LGPRILR++TA + Sbjct: 64 THSLVKSFTSLDKNKKNKILAIFGPEGGFSPKEITIFKQAG-ATLCGLGPRILRAETAPL 122 Query: 232 AAMALVQA 239 ++ + Sbjct: 123 YFLSALSY 130 >gi|203284273|ref|YP_002222013.1| uncharacterized protein conserved [Borrelia duttonii Ly] gi|201083716|gb|ACH93307.1| uncharacterized protein conserved [Borrelia duttonii Ly] Length = 242 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 13/214 (6%) Query: 29 YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFS 87 YHYL +V R++ GD + + GK S+I + IRF + + + S Sbjct: 24 YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFAIDIFIS 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141 +K +LD +++ VE+G+ +I V + N R A +Q Sbjct: 84 NLKGRKLDLSLRQVVEIGVNSINIVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGNA 143 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P I + + N + ++ + L I+ + ILIGPEG + Sbjct: 144 QIPSINFYNDFFSIPYSSSVNYYVAYS-----KGDFLHLGENISVFGKIGILIGPEGCFL 198 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + L F + ILR+DTA V A+A Sbjct: 199 KLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231 >gi|227504549|ref|ZP_03934598.1| 16S rRNA m3U1498 methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198869|gb|EEI78917.1| 16S rRNA m3U1498 methyltransferase [Corynebacterium striatum ATCC 6940] Length = 240 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 21/227 (9%) Query: 11 FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65 F+ L + G + + V R+ G+ + L +G L+ I + + Sbjct: 6 FIHPDLSQARVGEPVGLDGAEGRHAVTVKRLSVGERLKLIDGTGTAALATIQSISGKDHL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120 V+ + + V + + K+ R + + + + G I Sbjct: 66 AALVDAVTFAPEPNPRVVVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDAKK 125 Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + + I+AA+Q +P + P T + + V +E S Sbjct: 126 APKALAKWEAAAIAAAKQSRRDRIPAVSGPLTTPQVAQLIAGQTAYVLHEEATAS----- 180 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + V +L+GPEGG +EE E L + LGP +LR+ Sbjct: 181 -IKDVPLEGTVYLLVGPEGGIGAEELERL----GAQSIKLGPEVLRT 222 >gi|119953152|ref|YP_945361.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae 91E135] gi|119861923|gb|AAX17691.1| hypothetical cytosolic protein [Borrelia turicatae 91E135] Length = 242 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 16/238 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVGKS 64 +K++ +D YHYL V R+K GD + + G E ++IS + + Sbjct: 1 MKQIVLDDTCLFDNDIIIDDVKIYHYLVDVRRVKVGDTLNVLLG-GREVRFAEISSIDNN 59 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I+ + + +V S +K +LD +++ VE+G+ I V + Sbjct: 60 LIKLSTLKVEMLKKRDFEVSIFISSLKGRKLDLSLRQVVEIGVDHINIVNADNSVARIDM 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R A +Q +P + + + N Sbjct: 120 DDLEFKSTRFLKLINEALKQSGNTQVPSLNFYKNFFSISYSPSVN-----YYVAHKEGVL 174 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 L I+ + ILIGPEG + E + L F + ILR+DTA V ++A Sbjct: 175 LGCGDDISVFGKIGILIGPEGCFSKSEIDFFKKLNF-KFVRFNTPILRADTAVVYSLA 231 >gi|312879754|ref|ZP_07739554.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM 12260] gi|310783045|gb|EFQ23443.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM 12260] Length = 243 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 13/216 (6%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 L + + Q H+L VLR EG + +G+ L G+ +VE S Sbjct: 13 LLGEGRYLLDEAQAHHLTRVLRRYEGALLEGLSGEGRVLLRLRLGAGRVEAEEVERVPES 72 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRT 129 V + +K ++ + +++ + E G+ IR + + + R R Sbjct: 73 PDLLRVVLVVA-LLKADQFEPLLRMAAEFGVAEIRLLACERSVPRLESCREEGKLSRWRR 131 Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 + Q L P ++PP + L + + L + Sbjct: 132 ILDESTRQSGSLRPPTLHPPVLVREL-----EEATLPPSRFGAFLAPGTVPLGRCLPVEA 186 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 A+ +GPEG + +E ETL + FV P+ LGPRILR Sbjct: 187 AAVAVGPEGDWSDQEVETLRAKGFV-PVGLGPRILR 221 >gi|251772544|gb|EES53110.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 280 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 17/226 (7%) Query: 29 YHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 +L LR G+ + + +L ++ E + + + Sbjct: 45 SRHLFRSLRAGVGERFCFVDPDRPERRFLGRVMKDAPPEISLEELAMETPSPRRTFDLAV 104 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDI 140 + +K + +I+ + +G+ + P++ +Q +R A++ Sbjct: 105 ALLKGEGWEDLIEPAAILGVRRLVPLLADRSQLRWSSDVLAKKRERFTAKVREASQLAGR 164 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 I P +L LL ++F D E + L + P VA IGPEGG+ Sbjct: 165 ADRMEISEPVSLGELLLKLPSEGSLLFCDTAGHVEPAGTVLGRLGSAPAVA-AIGPEGGW 223 Query: 201 HSEEKETLHSLPF----VTPLSLGPRIL--RSDTAAVAAMALVQAI 240 E+E + + +SLGP IL R A V +L+ Sbjct: 224 SERERELVEEFGHKGGRLHRISLGPLILPGRL--APVVVASLLSQE 267 >gi|313683427|ref|YP_004061165.1| hypothetical protein Sulku_2305 [Sulfuricurvum kujiense DSM 16994] gi|313156287|gb|ADR34965.1| protein of unknown function DUF558 [Sulfuricurvum kujiense DSM 16994] Length = 222 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG---EWLSKISYV-GKSIRFKVEYQSRS 75 + SGD Y YL V R K GD ++ F ++ E+ ++ G+ F ++ + Sbjct: 12 DELSVSGDDYKYLIKVRRHKAGD-LIAFRSRERLSEEYRYRLERTDGRCAYFSLQSHHHA 70 Query: 76 QTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTIS 133 ++ + + + ++ + E+G+ I + R +Q N + +R + S Sbjct: 71 PSESNHRLHIGWCLVDPKTIEKTLPMLTELGVSKITFIHCRRSQQNFRLDFERYKRIMES 130 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 + QC +L + + LK + + F E GS+ S+E ++ Sbjct: 131 SIMQCGRTSLIELSESPNMSTFLKEHNDAVVLDFGGEVLGSDESIE-----------TVV 179 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSL--GPRILRSDTAAVAAMALV 237 IG EGG+ E++ + + L P ILRS+TAAVA + + Sbjct: 180 IGCEGGFDESERKVFSNH----RIRLFPSPMILRSETAAVAIASRL 221 >gi|149918557|ref|ZP_01907046.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1] gi|149820633|gb|EDM80045.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1] Length = 241 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 14/238 (5%) Query: 9 RLFVDFPLCIKTQ--GKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-- 63 R+F+ + Q GD+ HYLA V R + GD++ + G W +++ + + Sbjct: 4 RVFLPPSRTEEAQAEITLDGDESHYLAKVRRARVGDSVEVLGGAAGQAWSARVVALERRA 63 Query: 64 -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 + + + P LD + + E G + V +Q Sbjct: 64 ARVLLLAPLPPPQPPPPLRLVLLGMPDAPAVLDS-LSAASEAGATRLALVRCARSQGRGP 122 Query: 123 NMDRVRTYTISAAEQCDI---LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179 + RV +A QC L + + P TLE L++ V G S Sbjct: 123 SPARVARVLRAAQRQCGRRLALVVEGLEQPWTLERALEHHAEWPGHVAWARGRG-RPSAA 181 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L A A +L+GPEGG E F LSLGP +LR+ TA VA +A + Sbjct: 182 DLDAPAPGRR--LLVGPEGGLTDGEVTLAMDAGF-QMLSLGPWVLRTPTAVVAGLARL 236 >gi|160901594|ref|YP_001567175.1| hypothetical protein Pmob_0103 [Petrotoga mobilis SJ95] gi|160359238|gb|ABX30852.1| protein of unknown function DUF558 [Petrotoga mobilis SJ95] Length = 232 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 88/208 (42%), Gaps = 9/208 (4%) Query: 40 EGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYM 97 EG+ I + G + + I +GK ++ + + + V F K +R+ + Sbjct: 31 EGETIKVITGDGLLFTATIVKIGKKETVLEIIDKEKPQEDYKPYVSVYFGMSKWDRMHLL 90 Query: 98 IQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 ++K +E+ + + + N+++ + I ++Q +P I E + K Sbjct: 91 LEKMIELRANSFYLYRGEKSDINYTNLNKFQRTIIETSKQTVFAHIPQINFVQ-FEEIPK 149 Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL 217 + D ++N + L + + +++GPE G+ EK+ + F T + Sbjct: 150 K-----DTIVLDLDGTNDNLGKVLKELKGAQKINLVVGPEYGFSKREKDFFSTNEFKT-V 203 Query: 218 SLGPRILRSDTAAVAAMALVQAICGDWY 245 +LG I R +T+A+ AM+++ + Sbjct: 204 NLGKSIFRFETSAIYAMSIINYEYNRLF 231 >gi|268678804|ref|YP_003303235.1| hypothetical protein Sdel_0162 [Sulfurospirillum deleyianum DSM 6946] gi|268616835|gb|ACZ11200.1| protein of unknown function DUF558 [Sulfurospirillum deleyianum DSM 6946] Length = 222 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 21/238 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65 ++ FV P + + Y +L V R+ + + N + +I VGK Sbjct: 1 MQ--FVYHPEAGEALLRVDVRAYEHLFKVRRVAKDALLYWRNLNDGVLYGYRIQEVGKKE 58 Query: 66 RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 +V + + + I ++ + E+G+ + + ++Q +H Sbjct: 59 ALLERVSGEILEIDASKKMHIGWCVIDPKMIEKTLPMLNELGVSKLSFIYAEFSQKSHKL 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + DR++ I++ +QC + ++L+ L+ + + + F+ ET + Sbjct: 119 DFDRMQRIVINSCQQCGRSRWMEMELFSSLQAYLEAYPTSTILDFSQETMKESAEISS-- 176 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG-PRILRSDTAAVAAMALVQA 239 ILIGPEGG+ +E+ + T + L ILRS+TA VA + + A Sbjct: 177 ---------ILIGPEGGFSEKERNMFSNH---TIVGLTCKTILRSETAVVAVASKILA 222 >gi|51245558|ref|YP_065442.1| hypothetical protein DP1706 [Desulfotalea psychrophila LSv54] gi|50876595|emb|CAG36435.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 255 Score = 125 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 103/248 (41%), Gaps = 18/248 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----I 65 LF + + + + + ++ VLR + GD + + G ++KI + + Sbjct: 5 LFEEKEISSTYHIQITDHRAKHIVKVLRSQVGDRVRVGVIDGGRGMAKIVAIKPKFPFSV 64 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM- 124 ++ ++ ++ + + + + L ++ + +G+G I + ++ + + + Sbjct: 65 DLDIQLETTLPEEKPVIDLVLALPRPIMLRRILSQVTSLGVGRIFLIDSQRVEKSFWQAS 124 Query: 125 ----DRVRTYTISAAEQCDILTLPFIYPPTTL-----EFLLKNWDHNCQIVFADET---C 172 ++ R + + EQ LP + E L+K+ D ++ AD Sbjct: 125 LLQNEQYREHLLIGLEQAVATRLPEVSIYPKFKGFMDELLVKDLDDYSALIVADPAGTNT 184 Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 SE + ++ V + +GPEGG+ E + F + ++G RIL+ DTA +A Sbjct: 185 FSEALRQAGGSLRQGGRVLLCVGPEGGWVPAEVDQFSGCGF-SICTIGERILKVDTAVIA 243 Query: 233 AMALVQAI 240 + + A+ Sbjct: 244 LHSRIMAL 251 >gi|187918227|ref|YP_001883790.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia hermsii DAH] gi|119861075|gb|AAX16870.1| hypothetical cytosolic protein [Borrelia hermsii DAH] Length = 242 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 90/237 (37%), Gaps = 16/237 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVGKS 64 +K++ +D YHYL V R+K GD + + + E ++I + + Sbjct: 1 MKQIVLDDSCLFDNDIIIDDVKIYHYLVDVRRVKLGDTLNVL-LRGREIRFAEIIGINNN 59 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 IR + +T+ ++ S +K +LD +++ VE+G+ I V + Sbjct: 60 LIRLSTLKIEKLKTRDFEISMFISNLKGRKLDLSLRQIVEIGVDQINIVNADNSVARIEM 119 Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 + + R A +Q +P I + + V Sbjct: 120 DDLKFKSSRFAKLIDEALKQSGNTQVPSINFYRNFFSIPYSPS-----VSYYVAHKDGVL 174 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 L + I+ + ILIGPEG + E + L F + ILR+DTA V ++ Sbjct: 175 LSCGNDISASGKIGILIGPEGCFSKSEIDFFKKLNF-QFVRFNTPILRADTAIVYSL 230 >gi|237753184|ref|ZP_04583664.1| ribosomal RNA small subunit methyltransferase E [Helicobacter winghamensis ATCC BAA-430] gi|229375451|gb|EEO25542.1| ribosomal RNA small subunit methyltransferase E [Helicobacter winghamensis ATCC BAA-430] Length = 219 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 25/235 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKS- 64 ++ F T G+ Y++L R ++ D+I L N D ++ I+ +GK Sbjct: 1 MQ--FTYHKYAGNTTITLEGEIYNHLFRSRRTRKLDSITLCNLSDTNVYIYTIAEIGKKS 58 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124 +++ ++K I++ I ++ + E+ + I ++Q H+ + Sbjct: 59 ATLQLKTTQNMESKTPKGHLIWAMIDPKNIEKTLPFLNELNLAHITFFYADFSQK-HFKL 117 Query: 125 D--RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 D R+ ++ EQC LT + L +L+ + + F + + L Sbjct: 118 DNLRLDRILENSCEQCGRLTRLKLELLNNLTEVLQKYPKIAVMDF---------NAKPLE 168 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP--RILRSDTAAVAAMA 235 + IP LIG EGG+ E++ L + + P ILRS+TAAV A + Sbjct: 169 SSLEIP---FLIGTEGGFSPNERKLLSTQTTFSA----PNCNILRSETAAVYATS 216 >gi|255086017|ref|XP_002508975.1| predicted protein [Micromonas sp. RCC299] gi|226524253|gb|ACO70233.1| predicted protein [Micromonas sp. RCC299] Length = 207 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 11/171 (6%) Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAE 136 + DV +K R D++++K E+G ++ P++T R + R +A + Sbjct: 27 PKWDVAVACGSLKGGRADWLVEKCSELGASSLVPLLTERSGSVGGSSEGRWERVAAAAMK 86 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV------ 190 Q ++P T L + + + + V Sbjct: 87 QSLRNHRLVVHPALTTTQLCEMVRRAPVALLCAAGAPPLREVMSMAESRTGDGVEAGYSE 146 Query: 191 ---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 +++GPEG + EE ETL + P+ LGP LR +TAAVA ++ V Sbjct: 147 GGGVLIVGPEGDFTPEEVETLVAAG-ARPVGLGPLRLRVETAAVAIISCVS 196 >gi|302830234|ref|XP_002946683.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f. nagariensis] gi|300267727|gb|EFJ51909.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f. nagariensis] Length = 187 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 19/164 (11%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------------HYNMDRVRTYTISAAE 136 +K R +++++K E+G + P++T +Q + R+ I+A + Sbjct: 11 LKGGRAEWLVEKLTELGAFMMIPLVTERSQVGMTGRGCTAFFPNRISPGRLERVAIAATK 70 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----VAI 192 Q + + PPT L +L D F L A + + Sbjct: 71 QSLRPHVLHLAPPTALADVL--PDDGGGESFCLIAVAGAPPLATRGCDAAGESEGPLRVL 128 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 IGPEG + E L P+ LG LR++TAA+ +A Sbjct: 129 FIGPEGDFTPAELAALVQAG-ARPVGLGTNRLRTETAAIGLLAA 171 >gi|262195082|ref|YP_003266291.1| hypothetical protein Hoch_1850 [Haliangium ochraceum DSM 14365] gi|262078429|gb|ACY14398.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365] Length = 248 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 17/232 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 LF + S + ++ VLR GD + + + + +I +G V Sbjct: 5 LFEAHEFGEGDRLVLSDRRAQHVQQVLRASLGDRVRVGMVRGPTGVGEIVDIGDERVEMV 64 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNM 124 + ++ V I + + L ++Q + E+G+G I V + H ++ Sbjct: 65 VSFTEPAPERPRVDLILAVPRPKALSRVLQTASELGVGHIDLVNAWRVDKSYFDSHHLDL 124 Query: 125 DRVRTYTISAAEQCDILTLPFIY----PPTTLEFL----LKNWDHNCQIVFADETCGSEN 176 + + EQ +P I L+ + L + ++ Sbjct: 125 GSLAHHVHLGCEQSGNTWVPEISVHRLLMPFLDEVMPQRLAGAEATSTLIAHPRAAE--- 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +E + V + IGPEGG+ E + FV P++ PR+LR +T Sbjct: 182 PIENIVPPGPAQRVLLAIGPEGGWIERELSSFTGRGFV-PVTCTPRVLRVET 232 >gi|227497713|ref|ZP_03927917.1| protein of hypothetical function DUF558 [Actinomyces urogenitalis DSM 15434] gi|226832848|gb|EEH65231.1| protein of hypothetical function DUF558 [Actinomyces urogenitalis DSM 15434] Length = 193 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYIFSPI 89 V R++ G+ + L +G + +++ + +V + + I + Sbjct: 1 AVTVRRLRAGERVDLADGAGLRLVCEVTAAEGKDRLAVRVLERIEEPAPSHALVLIQALA 60 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTL 143 K R + ++ + E+G + P + +R + AA+Q + Sbjct: 61 KGGRDEQAVETATEVGADVVIPWQAGRSVAQWKGPKVAKGRERWQATASEAAKQARRARV 120 Query: 144 PFIYPPTTLEFLLK-----NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 P + P T L +V +E + ++A +A+++GPEG Sbjct: 121 PQVAEPMTTAQLAAWVRETTQAGGTVLVLHEEATAPIGGV----SLAGSGAIAVVVGPEG 176 Query: 199 GYH 201 G Sbjct: 177 GIS 179 >gi|319957587|ref|YP_004168850.1| hypothetical protein Nitsa_1856 [Nitratifractor salsuginis DSM 16511] gi|319419991|gb|ADV47101.1| protein of unknown function DUF558 [Nitratifractor salsuginis DSM 16511] Length = 225 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 21/241 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD---GEWLSKISYVGK 63 ++ F+ P +Q G+ Y YL V R++ D + L N +D + ++ + Sbjct: 1 MQ--FLYHPEAGASQLLLEGESYRYLFKVRRLRSEDPLHLRNMRDDCLYTYRTETLDRRR 58 Query: 64 SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HY 122 + V + + + I ++ + EMG+ I V +Q Sbjct: 59 ARIALVSCRDLKIVLNRKLHLGWCQIDPRNVEKTLPALNEMGVFGITFVRCERSQRQFEP 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + +R+ I++++QC L + +LE L+ + F+D +L Sbjct: 119 DFERLERILINSSQQCGRSELMRLETAESLEAFLERHPEAMLLDFSDR---------RLP 169 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMALVQAIC 241 +I++G EGG+ EE+ L P ILRS+TA A + + Sbjct: 170 CGGDWTERSIVVGCEGGFTPEERALFSEE---RIFGLETPTILRSETA--VCAAAARLLL 224 Query: 242 G 242 G Sbjct: 225 G 225 >gi|195952461|ref|YP_002120751.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1] gi|195932073|gb|ACG56773.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1] Length = 219 Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 24/223 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F + + + VLR+++ + + L +D + +K + G++ Sbjct: 1 MHRFF---AFRKNGTIEFFEEDKKH-FKVLRIEKNELLELVI-EDKIYEAK--FTGQNFE 53 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHY 122 +E +++ + PIK L+ +I +V+ G+ I PV + + Sbjct: 54 L-LEEKTKPPDVKIYANVCI-PIKLQTLETIIDYAVQGGVFEITPVFCKRSFQDSSKLLE 111 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 R++ A +Q LP + P +L+ + IVF + L+ Sbjct: 112 KYQRLQKILKEAIKQSRPSFLPKLNHPISLQDITLQ---GYGIVFDSFEKPKNDLLKD-- 166 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 ++ GPEGG EE E L +L F T SLG ILR Sbjct: 167 -----NKYTLVFGPEGGLSKEEVEFLKALGFNTH-SLGDNILR 203 >gi|167817439|ref|ZP_02449119.1| hypothetical protein Bpse9_20039 [Burkholderia pseudomallei 91] Length = 126 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + + R FVD L D + AHVLR++ GD + LF+G G++ +++ + K Sbjct: 17 AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75 Query: 65 IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112 ++ V +++D++I+K+VE+G+ A+ P+ Sbjct: 76 GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPL 125 >gi|34558434|ref|NP_908249.1| 16S ribosomal RNA methyltransferase RsmE [Wolinella succinogenes DSM 1740] gi|34484153|emb|CAE11149.1| conserved hypothetical protein [Wolinella succinogenes] Length = 220 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 24/235 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG--KDGEWLSKISYVGKS 64 ++ L++ + + G+++HYL V R K + + LF + K + + K Sbjct: 1 MQFLYLKESGAP--RLRIEGEEFHYLFKVRRTKS-EELPLFRNLEDGKLYRYKAAEIAKR 57 Query: 65 IRFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-H 121 +++ + K +++ + ++ + E+G+G I RY+Q Sbjct: 58 HADLELLEAKEEEKIPCAFFHLLWAVVDAKTIEKSLPMLNELGVGKISFFYARYSQRDIR 117 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +M+R+ I + EQ LP I LE LL+ + + F G E K+ Sbjct: 118 LDMERLGRILIHSCEQSGRTRLPVIECFKNLEELLECYSDFGVMDF-----GGEILQPKV 172 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMA 235 AI++GPEGG+ EE+E L + G IL+S+TAA+ A+A Sbjct: 173 CQ-------AIMVGPEGGFSQEEREKLVGQKRYSS---GENLILKSETAALFALA 217 >gi|149195029|ref|ZP_01872121.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2] gi|149134742|gb|EDM23226.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2] Length = 219 Score = 119 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 23/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65 ++ L+ Q + +G+ + YL V R+K+ + + + N KD + KI + K Sbjct: 1 MQFLYHPE---TSNQIEITGESHKYLFKVRRIKKDELVKIRNLKDDILYTYKILEINKKS 57 Query: 66 -RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122 ++ + S K + + I+ ++ ++ E+G+ I Y+Q Sbjct: 58 STLQLINKEFSPNKPKEFLHLAWCIIEPKNIEKVLPSLNEIGVSKISFTYCDYSQKNFKL 117 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 N++R++ I++++QC + I + + + + + + F G E K + Sbjct: 118 NLNRLQKILINSSQQCGRSNIIEIEIINSSKEFFEKYQNFTALDF----NGKEIECNKKY 173 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ILIGPEGG+ EE+ F + L IL+S+TAA A++ Sbjct: 174 TNP------ILIGPEGGFSEEER-----KKFTEIIKLKSFILKSETAA-CAIS 214 >gi|303284987|ref|XP_003061784.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457114|gb|EEH54414.1| predicted protein [Micromonas pusilla CCMP1545] Length = 184 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-RVRTYTISAAEQC 138 +V +K R D++++K E+G ++ P +T + T + R +A++QC Sbjct: 2 WEVAVACGGLKGGRADWLVEKLAELGAASLAPTLTARSAVTKRGREGRWVRVAAAASKQC 61 Query: 139 DILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAI------------A 185 + P + LL+ D ++ A ++L Sbjct: 62 LRTHALVVESPCAFDALLRRVRDAPIALLAAAGAPPLRDALRDADVDDGDDGETASGPGR 121 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +++GPEG + +E L TP+ LGP LR +TAAVA MA V Sbjct: 122 GATGGLLIVGPEGDFTEDELGALIDAG-ATPVGLGPLRLRVETAAVALMACV 172 >gi|32266493|ref|NP_860525.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter hepaticus ATCC 51449] gi|32262544|gb|AAP77591.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 236 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 94/236 (39%), Gaps = 13/236 (5%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65 ++ F+ + + +YL V R++ G+ + L N D + ++S + K Sbjct: 1 MQ--FLYHKDAGNPLVSVNDENVNYLMKVRRVQLGETLALRNLNDDNLYTYELSEIDKKA 58 Query: 66 RFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 S++ S + +++ I+ ++ + E+G+ I ++Q Sbjct: 59 LTLRLQASQNAPSNIKSHLHLLWAIIEPKIIEKTLPMLNELGVSRISFFYAAFSQGHFKL 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 ++ R+ I + +QC L + + + + F + + Sbjct: 119 SLPRMEKILIQSCQQCGRSDLMELELYKNFHRICEEYTDFYAFDFGGVDICNFTPCQNHS 178 Query: 183 AIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMAL 236 I + V I++G EGG+ ++E+E F ++L ILRS++A+V ++ Sbjct: 179 KIGKEKHLVRIMVGAEGGFSTKERER-----FAKIITLNDTLILRSESASVFIASI 229 >gi|329728328|gb|EGG64765.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 134 Score = 118 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 7 LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64 ++R F+D + + + + H++ +V+R G I+L +L +I+ + Sbjct: 1 MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60 Query: 65 IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117 I + E Q+ + DV IK ++ ++++QK+ E+G + V + Sbjct: 61 IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120 Query: 118 QNTHYNMDRVRT 129 ++R Sbjct: 121 AKVAKKIERWTK 132 >gi|324998264|ref|ZP_08119376.1| protein involving differentiation [Pseudonocardia sp. P1] Length = 239 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 9/136 (6%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRS 75 + G + + A V R++ G+ ++L +G+ G +++ ++ +V R+ Sbjct: 18 PGGRTLLDGPEGRHAATVRRLRPGEALVLSDGRGGLAHAEVVAPEGKDALSLRVLETLRT 77 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHYNMDRVR 128 V + +K +R + ++ + E G I P + R R Sbjct: 78 PPPAVRVVVAQALVKGDRGELAVETATEAGADGILPWTASRCVARWDDGPRGAKALARWR 137 Query: 129 TYTISAAEQCDILTLP 144 + AA+Q P Sbjct: 138 STVREAAKQARRPWQP 153 >gi|296119869|ref|ZP_06838423.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes DSM 20306] gi|295967023|gb|EFG80294.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes DSM 20306] Length = 260 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 20/228 (8%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLF----------NGKDGEWLSKISYVGKSIRF 67 +G + + V R+ G+ +LL +G E ++ + Sbjct: 16 QGDVLTLTGAEGRHAVTVKRLAPGEQVLLVHAPDTPSLVDDGLFVEATVHETHGKDELVV 75 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121 +V+ + V + + K+ R + I + + G + + Sbjct: 76 RVDVVGATPAPNPRVTVVQAIPKSERSELAIDLATQAGADEFIAWQSDRCIAKWDAKKAP 135 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSL 178 + + + SAA+Q +PF + P T L L + V ++ S + Sbjct: 136 KALQKWQAQAQSAAKQSRRTRVPFAHGPLTTAQLVQHLAEREDCLIYVLHEDATDSIKDV 195 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 A ++ +LIGPEGG EE TL P+ LGP +LR+ Sbjct: 196 PLTTDAATSTDLILLIGPEGGIGPEELATLQKAG-AHPIKLGPEVLRT 242 >gi|255321812|ref|ZP_05362962.1| ribosomal RNA small subunit methyltransferase E [Campylobacter showae RM3277] gi|255300916|gb|EET80183.1| ribosomal RNA small subunit methyltransferase E [Campylobacter showae RM3277] Length = 218 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 27/231 (11%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKS-IR 66 F+ Q + G+ + +L R K G+ I L +G++ + +I + K Sbjct: 3 FLYSKEAKNEQIRLDGEAFLHL-KARRAKLGERIDVRNLTDGQNHIY--EIVNLDKRGAE 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD- 125 + + + + SD+ ++ + ++ + EMG+ I ++Q ++ +D Sbjct: 60 LNLIFSHDVEARNSDLTLAWAVVDPKTIEKTLPGLNEMGVAKIVFFYGEFSQK-NFKLDF 118 Query: 126 -RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 R+ IS+ EQC L +L+ L+K + + I F E E Sbjct: 119 SRLERILISSCEQCGRNDLMKFEIYKSLDELVKFYPNVALIDFEGENLDGYAGKE----- 173 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA--AVAA 233 + IGPEGG+ E+E + + ILRS TA +AA Sbjct: 174 ------ILAIGPEGGFSQSEREAVAKKYGLRA----KNILRSQTAILGIAA 214 >gi|302518999|ref|ZP_07271341.1| involving differentiation [Streptomyces sp. SPB78] gi|302427894|gb|EFK99709.1| involving differentiation [Streptomyces sp. SPB78] Length = 141 Score = 116 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 1/135 (0%) Query: 110 RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169 R V ++ + R A +Q P I + + V Sbjct: 7 RCVTQWRGDRGAKSLAKWRATAREAGKQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLH 66 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E G+ ++ + ++ +++GPEGG EE + + LGP +LR+ TA Sbjct: 67 EDTGTASTPLATLPLPDEGDIVLVVGPEGGVAPEEIASFTAAG-AHVCRLGPSVLRTSTA 125 Query: 230 AVAAMALVQAICGDW 244 AA+AL+ G W Sbjct: 126 GTAAIALLSGRTGRW 140 >gi|206602521|gb|EDZ39002.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 287 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 98/237 (41%), Gaps = 20/237 (8%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGK-SIRFKVEYQSRSQTKQ-SDV 82 + +L LR KEGD+ + + + + S++ V+ + ++T + Sbjct: 31 RELSRHLLSSLRAKEGDSFPFSDPETGTIYRGTLVSREPCSLKLVVDSEHATRTHFFPRL 90 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-------TQNTHYNMDRVRTYTISAA 135 +FSP+K + + +V G+ ++PVI+ ++ R + Sbjct: 91 GIVFSPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWSESEGWSSKAKRFAGIVREKS 150 Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-------HIP 188 + T I P +L+ LKN + + F ++ G+ + ++ + ++ Sbjct: 151 QLAGRTTRMHIASPLSLKESLKNRSSDVFLWFDEDPVGALDPMKVIDSLRRFSLQFWEQK 210 Query: 189 NVAILIGPEGGYHSEEKETLH---SLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + ++GPEGG+ ++++ L V +SLG R+ + A +A++ + G Sbjct: 211 TIWSVVGPEGGWSPKDRDCLREPEEKGSVFRVSLGERVFSGEMALLASILFLGTFLG 267 >gi|319440584|ref|ZP_07989740.1| hypothetical protein CvarD4_02357 [Corynebacterium variabile DSM 44702] Length = 251 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 33/224 (14%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80 Q + + A V R++ G+ ++L +G + +++ + Sbjct: 23 QFTLPAAEAKHAA-VKRIRTGEPVVLTDGSGRGVSAAFGTAD---TVTGSGVLPARSPRP 78 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--------NTHYNMDRVRTYTI 132 V + + K+ R + + +V+ G I P + + + Sbjct: 79 RVTVVQAIPKSERSELAVDLAVQAGADRIIPWQSDRCIAKWDGKPGKAEKARAKWEAAAV 138 Query: 133 SAAEQCDILTLPFIYPPTT----LEFLLKNW------DHNCQIVFADETCGSENSLEKLH 182 SA +Q L + T L L + D +V +E L+ Sbjct: 139 SAMKQSRRLDGAHVGDLLTDIDDLADALADRPWAEPVDSVLILVLHEEAATPLAQLDL-- 196 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + + ++IGPEGG E E P+ LGP + R+ Sbjct: 197 ---DVDEIVLVIGPEGGVSPREVEA------GQPVVLGPEVYRT 231 >gi|157738266|ref|YP_001490950.1| 16S ribosomal RNA methyltransferase RsmE [Arcobacter butzleri RM4018] gi|157700120|gb|ABV68280.1| conserved hypothetical protein (DUF558 domain protein) [Arcobacter butzleri RM4018] Length = 223 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 38/243 (15%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65 ++ F C + + Y+YL R K D I N KD +L KIS++ K Sbjct: 1 MQ--FTYDEFCGNESLEIKDEVYNYLIKARRHKIDDEIYFRNLKDEYIYLYKISFIDKKK 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP----IKTNRLDYMIQKSV----EMGMGAIRPVITRYT 117 + +++ + K I+K + E+G+ I + + ++ Sbjct: 59 ALLNLLSKEEKVLENEKKLHLGWCIVDPK------TIEKYITSLNEIGIEKITFIYSDFS 112 Query: 118 QN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++++ I+++ QC ++ + L+ +K D + F Sbjct: 113 QKNFKINIEKLEKILINSSSQCGRSSIIKLEICKNLDEFMKKNDEVYFLDF--------- 163 Query: 177 SLEKLHAIAHIPNV-AILIGPEGGYHSEEKETLHSL---PFVTPLSLGPRILRSDTAAVA 232 N+ ++IG EGG+ E++ + F + L ILRS+TA ++ Sbjct: 164 --STTSIDEKKENIKTLVIGCEGGFSKNERDKFNKNFIVGFDSNL-----ILRSETAIIS 216 Query: 233 AMA 235 A + Sbjct: 217 ASS 219 >gi|152991814|ref|YP_001357535.1| 16S ribosomal RNA methyltransferase RsmE [Sulfurovum sp. NBC37-1] gi|151423675|dbj|BAF71178.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 223 Score = 115 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 24/236 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65 ++ L+ + Q GD + YL V R K D I L N + I+++ K Sbjct: 1 MQYLYNEEAGSP--QLTLEGDAHRYLFKVRRQKADDTIYLRNLNDNQLHRYAITHIDKRS 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 +S ++ I ++ ++ EMG+ I + + +Q + Sbjct: 59 ATLTLEESTVLEIKASKVLHVGWCVIDPKNIEKVLPSLNEMGVAKITFIYCKRSQKSFKP 118 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R+ +++++Q + + L L + + F SEN+ + Sbjct: 119 DFKRLEKILLNSSQQSGRSEMMQLEMAEDLRSFLAENPQSKMLNF------SENNF--IS 170 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHS---LPFVTPLSLGPRILRSDTAAVAAMA 235 A I I+IG EGG+H +E L F TPL +L+S++A A + Sbjct: 171 GAADIE--TIVIGCEGGFHEDEVALFDEEMILGFDTPL-----VLKSESAVCAVAS 219 >gi|331082512|ref|ZP_08331637.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400490|gb|EGG80120.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium 6_1_63FAA] Length = 151 Score = 115 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R FV+ Q SG +++ +VLRMK + IL+ +G+D E+ I +G+ Sbjct: 1 MYRFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEI 60 Query: 67 FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116 Q S + K+++++ +IQK+VE+G+ + PV ++ Sbjct: 61 LAHIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVASKR 112 >gi|320096055|ref|ZP_08027656.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976995|gb|EFW08737.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 263 Score = 115 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 18/228 (7%) Query: 16 LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR 74 L + + GD+ + A V R+ G+ + + +G+ + ++ K+ + V Sbjct: 18 LEAGARARLGGDEGRHAAQVRRIGAGEWVDVVDGRGRRLVCEVVGASKTGLDLVVASAVD 77 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVR 128 + + K + + ++G+GA+ P + + + Sbjct: 78 EAGPAVRTVLVQALAKGGHDEQAVDVCTQIGVGAVVPWASERAVVRWSGPRALKGRAKWQ 137 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGS--ENSLEKLH 182 +AA+Q +P + P LL + + ++ E G+ + L+ L Sbjct: 138 GVARAAAKQARRAFVPEVGEPLDTRGLLGWVGRLVEAGGAVLVCHEEAGAGIGSVLDGLR 197 Query: 183 AIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 A + VA+++GPEGG E E L + +GP +LRS Sbjct: 198 ADSPGGRLSGRVAVVVGPEGGISPGESEALVGAGAAL-VGVGPTVLRS 244 >gi|223038686|ref|ZP_03608979.1| RNA methyltransferase, RsmE family [Campylobacter rectus RM3267] gi|222880088|gb|EEF15176.1| RNA methyltransferase, RsmE family [Campylobacter rectus RM3267] Length = 218 Score = 115 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 33/231 (14%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKS-IR 66 F+ + + G+ + +L R K G+ I L +G++ + +I + K Sbjct: 3 FLYSKEAKNERIRLEGEAFLHL-KARRAKIGERIDVRNLTDGQNHIY--EIINLDKRGAE 59 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMGMGAIRPVITRYTQNTHY 122 + + + + S++ ++ + I+K++ E+G+ I ++Q ++ Sbjct: 60 LNLIFSHDVEARNSNLTLAWAVVDPK----TIEKALPSLNEIGVAKIVFFYGEFSQK-NF 114 Query: 123 NMD--RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +D R+ IS+ EQC L +L+ L+K + + I F E E Sbjct: 115 KLDFSRLERILISSCEQCGRNDLMKFEIYKSLDELVKFYPNVALIDFEGENLDGYAGKE- 173 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 + IGPEGG+ E+E + + ILRS TA + Sbjct: 174 ----------ILAIGPEGGFSRSEREAVAKKYGLKA----KNILRSQTAIL 210 >gi|317014464|gb|ADU81900.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Gambia94/24] Length = 226 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLELRNLKDGFLYTYEHAEIAKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQVLEVIPSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + +L + + + F ET + + EK Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFPSTKEVLNAYPNASVLDFNGETLPTSANFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I+IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GIIIGPEGGFSEQEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|315636555|ref|ZP_07891791.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315479204|gb|EFU69901.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 223 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 38/243 (15%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65 ++ F C + + Y+YL R K D I N KD +L KIS++ K Sbjct: 1 MQ--FTYDEFCGNETLEIKDEIYNYLIKARRHKIDDEIYFRNLKDEYIYLYKISFIDKKK 58 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP----IKTNRLDYMIQKSV----EMGMGAIRPVITRYT 117 + +++ + K I+K + E+G+ I + + ++ Sbjct: 59 ALLNLLSKEEKVLENEKKLHLGWCIVDPK------TIEKYITSLNEIGIEKITFIYSDFS 112 Query: 118 QN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 Q N++++ I+++ QC ++ + L+ +K D + F Sbjct: 113 QKNFKINIEKLEKILINSSSQCGRSSIIKLDICKNLDEFMKKNDEVYFLDF--------- 163 Query: 177 SLEKLHAIAHIPNV-AILIGPEGGYHSEEKETLHSL---PFVTPLSLGPRILRSDTAAVA 232 N+ ++IG EGG+ E++ + F + L ILRS+TA ++ Sbjct: 164 --STTSIDEKKENIKTLVIGCEGGFSKNERDKFNKNFIVGFDSNL-----ILRSETAIIS 216 Query: 233 AMA 235 A + Sbjct: 217 ASS 219 >gi|307637746|gb|ADN80196.1| Ribosomal RNA small subunit methyl transferase E [Helicobacter pylori 908] gi|325996346|gb|ADZ51751.1| Ribosomal RNA small subunit methyltransferase E [Helicobacter pylori 2018] gi|325997935|gb|ADZ50143.1| 16S ribosomal RNA methyltransferase [Helicobacter pylori 2017] Length = 226 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQPLGVIPSKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + +L + + F E + + EK Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFSNTKEVLNAYPKASVLDFNGEALPASANFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I+IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GIIIGPEGGFSEQEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|124514677|gb|EAY56189.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 282 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 93/230 (40%), Gaps = 22/230 (9%) Query: 26 GDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SD 81 + +L LR KEGD+ + + + + K++ +S +++ Sbjct: 31 RELSRHLLSSLRAKEGDSFPFSDPETGTIYRGTLVSRE-PCSLKLDIESGRISRKHFFPR 89 Query: 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISA 134 + +FSP+K + + +V G+ ++PVI+ + R Sbjct: 90 LGIVFSPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWPEGDGWASKAKRFAGIVREK 149 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP------ 188 ++ T I P +L LKN + + F +++ G+ + ++ + ++ P Sbjct: 150 SQLAGRATRMRIASPLSLRESLKNRASDVFLWFDEDSAGALDPMKAIDSLRRFPIQFWEQ 209 Query: 189 -NVAILIGPEGGYHSEEKETLH---SLPFVTPLSLGPRILRSDTAAVAAM 234 + ++GPEGG+ +++ L V +SLG RI + A + A+ Sbjct: 210 KTIWSVVGPEGGWSPRDRDCLRDPEEKGSVFRISLGERIFSGEMALLTAI 259 >gi|257459141|ref|ZP_05624260.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268] gi|257443526|gb|EEV18650.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268] Length = 218 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 28/236 (11%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-IRF 67 F D L + DQ+ +L V R + G+ I + N +DG +L +I + + Sbjct: 3 YFYDK-LAGEQSLVLQNDQFLHL-KVRRARAGERIDVRNLEDGASYLYEIVEISRKGAAL 60 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMGMGAIRPVITRYTQN-THY 122 + ++S T D ++ +++ +I+KS+ EMG+G + V +Q Sbjct: 61 NLVFKSSVFTPSHDFCVAWAVVESA----VIEKSLPALNEMGVGRLVLVYADLSQKNVRL 116 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R+ I++++QC ++ I + + L + +++ I F G +N Sbjct: 117 DPQRMERILINSSQQCGRNSIMQIEVLSGSDELAQRYENVSLIDF-----GGKN-----I 166 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 I +A +GPEGG+ E+E + + P ILRS+TA +A A + Sbjct: 167 DIFGGDEIA-FVGPEGGFSPREREKFKNAYALNS----PYILRSNTALIATCAKLM 217 >gi|305432700|ref|ZP_07401860.1| RsmE family RNA methyltransferase [Campylobacter coli JV20] gi|304444209|gb|EFM36862.1| RsmE family RNA methyltransferase [Campylobacter coli JV20] Length = 217 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 22/232 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGK-S 64 ++ F+ + K G+++ +L R+KE + + L N D + KIS + + S Sbjct: 1 MQ--FLYHKQAGEEILKLKGEEFAHL-KARRIKENEILSLRNLEDDFIYEYKISNLDRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 ++ QS++ + I T L+ + E+G+ + V T ++Q + Sbjct: 58 CLLYFLHKHFKSHPQSELDLALAVIDTKILEKTLPFLNELGVKKLHLVFTEFSQRNFKLD 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R+ IS+ EQC I ++ K + + F E + + Sbjct: 118 FERLEKIIISSCEQCGRSHKMQIQSYKNIQEFSKVFPDAVLVDFEGEVKEFDKTR----- 172 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ +EK+ + P ILRS +AA+A A Sbjct: 173 -------LYFIGPEGGFSPKEKQMFKEKICLKA----PNILRSQSAAIAVAA 213 >gi|42527383|ref|NP_972481.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC 35405] gi|41817968|gb|AAS12392.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC 35405] Length = 257 Score = 113 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 20/240 (8%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKD--GEWLSKISYVGKSIRFKVEYQS- 73 K + Y+YL V R+KEG + + NG + KI+ K I ++ + Sbjct: 11 DKDIIRLDKKDYNYLVSVRRIKEGQVLKISLNGVKPASAEVFKINTEKKYIELRLLKEEF 70 Query: 74 ----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--- 126 ++++ + IK N +D ++++ E G I PV+ ++ N+++ Sbjct: 71 AFDAEPYKPRAEIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSVVKKENINQTER 130 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQ---IVFADETCGSENSLEK 180 A +Q + I P L+ L ++ N + I+ +++ GS + + Sbjct: 131 RERIIREARQQSGSVVNTKILPAQELKAALDSVLDYTANRKTAFIMLSEKKVGSFSFFDC 190 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 L A + + IG EGG S+E E L F + +LR++TAA+ ++A Q I Sbjct: 191 LSAETEA--IVLAIGCEGGIGSKEIEFLKEHKFEE-VHFNTNVLRAETAAIYSIAAAQVI 247 >gi|217032602|ref|ZP_03438091.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128] gi|298735918|ref|YP_003728443.1| ribosomal RNA small subunit methyltransferase E [Helicobacter pylori B8] gi|216945738|gb|EEC24363.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128] gi|298355107|emb|CBI65979.1| ribosomal RNA small subunit methyltransferase E [Helicobacter pylori B8] Length = 226 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 FV PL + K G+ Y +L R+K + L N KD + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSLLYTYEHAEITKKHALLR 62 Query: 70 EYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 R I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGGRPLEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I++ EQC L + + +L + + F ET + EK Sbjct: 123 LERFQKILINSCEQCGRSVLMELEAFPNTKEMLNAYPKASVLDFKGETLPASADFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEQEREQFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|15612072|ref|NP_223724.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori J99] gi|8928475|sp|Q9ZKD2|RSME_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|4155595|gb|AAD06587.1| putative [Helicobacter pylori J99] Length = 226 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGVQPLEIMANKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFSNTKEALKAYPKASVLDFNGETLPASADFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225 >gi|942589|gb|AAC44027.1| unknown [Mycoplasma iowae] Length = 145 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 100 KSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 K E+ + I PV+ +QN + + R+ + + +Q + + I + LL+ Sbjct: 1 KLNELNISKIVPVVFSRSQNNIYLDYKRLNRIVVESCKQSNRVNPLIIENQIKFDELLEK 60 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 + E S+N I + + +IG EGG+ +E L+SL P++ Sbjct: 61 IKGSTT-FLCSEKETSKNINNYDLKIKNGDIINFIIGCEGGFTIDELNQLNSL--TLPIT 117 Query: 219 LGPRILRSDTAAVAAMALV 237 L ILRS+TAA+ A +++ Sbjct: 118 LTKTILRSETAAIYAASIL 136 >gi|154149486|ref|YP_001406011.1| hypothetical protein CHAB381_0412 [Campylobacter hominis ATCC BAA-381] gi|153805495|gb|ABS52502.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 219 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 101/229 (44%), Gaps = 19/229 (8%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVG-KSIRF 67 F D Q K + +Q+ +L R+K G+ I + N KDG ++ +I + K Sbjct: 3 YFYDET-AGNEQLKITNEQFSHL-KARRLKAGERIDVRNLKDGFNYIYEIMEISRKEALC 60 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDR 126 ++ +++ K D ++ ++ ++ + E+G+G + V + ++Q ++ R Sbjct: 61 ELIFKNSVIEKTPDFTVAWAVVENAVIEKTLPSLNEIGIGKVILVYSDFSQKNIKPDLKR 120 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + I++++QC ++ I + + L K + ++ SLE Sbjct: 121 MERILINSSQQCGRNSILEIEILNSSDELSKKFQDKISLI-----DFGGKSLEIF----G 171 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +A +GPEGG+ E++ + + P ILRS+TA ++ A Sbjct: 172 NDEIA-FVGPEGGFSERERKLFKNSYAINS----PYILRSNTAILSVCA 215 >gi|323445090|gb|EGB01887.1| hypothetical protein AURANDRAFT_35679 [Aureococcus anophagefferens] Length = 188 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 5/143 (3%) Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQ 79 + S Q+ Y+A V+R++EGD + F GEW + + + V+ + + Sbjct: 46 ELSPAQHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDET 105 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQ 137 + F+P++ R +I+K+VE+G + PV T + + + AAEQ Sbjct: 106 PRLDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQ 165 Query: 138 CDILTLPFIYPPTTLEFLLKNWD 160 C+ L +P + L L + Sbjct: 166 CERLRVPVVEDVVDLASPLGDLP 188 >gi|296272043|ref|YP_003654674.1| hypothetical protein Arnit_0503 [Arcobacter nitrofigilis DSM 7299] gi|296096218|gb|ADG92168.1| protein of unknown function DUF558 [Arcobacter nitrofigilis DSM 7299] Length = 222 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 30/239 (12%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS- 64 ++ FV K GD Y YL R K G + N K+ + +I + K Sbjct: 1 MQ--FVYSSEASLETIKVEGDIYKYLFKARREKIGSTVFFRNLKNNFIYSYEIFDISKKD 58 Query: 65 -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK----SVEMGMGAIRPVITRYTQN 119 ++ + + + + I++ + I+K E+G+ I Y+Q Sbjct: 59 ANLRLIKKEEKIVEANNKLHIIWAIVDPK----TIEKQLPYLNEIGVDKITFFYADYSQK 114 Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 N+++ I++++QC ++ + +L+ +L ++ + F++ + + Sbjct: 115 NFKLNIEKFEKILINSSQQCGRSSIIKLEIIASLDEVLTSYKDSFVFNFSNNHINDKKDI 174 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMAL 236 + I++G EGG+ +E E + + ILRS+TA V +A Sbjct: 175 KS-----------IIVGCEGGFSPKELEKFTEE---KTVGINSNLILRSETA-VTTIAA 218 >gi|325473652|gb|EGC76841.1| hypothetical protein HMPREF9353_01943 [Treponema denticola F0402] Length = 257 Score = 110 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 21/251 (8%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKD--GEWLSKISYVGK 63 +K+L V K + + Y+YL V R+KEG + + NG + KI+ K Sbjct: 1 MKQLIVSAE-PDKDIIRLNKKDYNYLVSVRRIKEGQVLNISLNGVKPASAEVFKINTEKK 59 Query: 64 SIRFKVEYQSRSQTKQSD-----VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 I ++ + + + + + IK N +D ++++ E G I PV+ ++ Sbjct: 60 YIELRLLKEEFAFDAEPYKPRAEIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSV 119 Query: 119 NTHYNMDR---VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFAD 169 N+++ A +Q + I P L+ L + I+ ++ Sbjct: 120 IKKENINQTERRERIIREARQQSGSVVNTKILPAQELKAALDSVLEYTAKRKTAFIMLSE 179 Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + GS + + L A + + + IG EGG S+E E L F + +LR++TA Sbjct: 180 KKTGSFSFFDCLSAETEV--IVLAIGCEGGIGSKESEFLKEHKFEE-VHFNTNVLRAETA 236 Query: 230 AVAAMALVQAI 240 A+ ++A Q I Sbjct: 237 AIYSIAAAQVI 247 >gi|57168671|ref|ZP_00367803.1| conserved hypothetical protein TIGR00046 [Campylobacter coli RM2228] gi|57019952|gb|EAL56632.1| conserved hypothetical protein TIGR00046 [Campylobacter coli RM2228] Length = 217 Score = 110 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 22/232 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGK-S 64 ++ F+ + K +++ +L R+KE + + L N D + KIS + + S Sbjct: 1 MQ--FLYHKQAGEEILKLKSEEFAHL-KARRIKENEILSLRNLEDDFIYEYKISNLDRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 ++ QS++ + I T L+ + E+G+ + V T ++Q + Sbjct: 58 CLLYFLHKHFKSHPQSELDLALAVIDTKILEKTLPFLNELGVKKLHLVFTEFSQRNFKLD 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +R+ IS+ EQC I ++ K + + F E + + Sbjct: 118 FERLEKIIISSCEQCGRSHKMQIQSYKNIQEFSKVFPDAVLVDFEGEVKEFDKTR----- 172 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ +EK+ + P ILRS +AA+A A Sbjct: 173 -------LYFIGPEGGFSPKEKQMFKEKICLKV----PNILRSQSAAIAVAA 213 >gi|145628643|ref|ZP_01784443.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae 22.1-21] gi|144979113|gb|EDJ88799.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae 22.1-21] Length = 99 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I P L+ D ++ S +L + A V +LIG EGG + Sbjct: 1 MPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA----EGVRLLIGSEGGLSA 56 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 +E F T + LG R+LR++TA++AA++ +Q GD Sbjct: 57 QEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQICFGD 96 >gi|307546094|ref|YP_003898573.1| hypothetical protein HELO_3504 [Halomonas elongata DSM 2581] gi|307218118|emb|CBV43388.1| hypothetical protein HELO_3504 [Halomonas elongata DSM 2581] Length = 237 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 9/213 (4%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 +L V R + GD + L + Y F + + V + + Sbjct: 27 HLRDVHRARAGDTLTLGVENGLLGRGTLLEYRDDEALFDISGLVETPPPALPVHLVLALP 86 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILTLP 144 + L ++ + +G+ A+ + TR + + +++R + + EQ +P Sbjct: 87 RPRMLARSLEHATALGVKALTLLNTRRVEKSYWQSPELGAEKIRRHLVLGLEQARDTQMP 146 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + ++ D +++ + + + + V ++IGPEGG+ E Sbjct: 147 EVTLAKGFRPFVE--DRLPKLLASSRGLVAHPGMPEACPRGVDEPVTLVIGPEGGFIPWE 204 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + L + LGPRILR +TA A +A + Sbjct: 205 VDKLLEAG-CRGIHLGPRILRVETAVTALLARL 236 >gi|149184078|ref|ZP_01862426.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1] gi|148848212|gb|EDL62514.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1] Length = 114 Score = 109 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%) Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNV 190 AEQ +P + P +L L+ D+ V A E N L + + Sbjct: 1 AEQSHRQHVPNVEFPVSLTELVTLADNFDYKVVAFEEDAKIGEQSNLAGILRSAKPGDRL 60 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG +E L FV+ LGPRI+R++TA + ++ Sbjct: 61 LAVFGPEGGLTEKEVNVLKDHGFVS-CGLGPRIMRAETAPLYLLSAASYQF 110 >gi|307721833|ref|YP_003892973.1| hypothetical protein Saut_1918 [Sulfurimonas autotrophica DSM 16294] gi|306979926|gb|ADN09961.1| protein of unknown function DUF558 [Sulfurimonas autotrophica DSM 16294] Length = 229 Score = 109 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 18/231 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD--GEWLSKISYVGKSI-- 65 +++ K G+ Y YL V R KEGD + N +D L KI+ + Sbjct: 8 IYLYEENAGKQSFSIKGELYKYLVKVRRHKEGDELGFRNKEDIKTLHLYKITAIEPRALH 67 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NM 124 K+ Q + + + I + ++ ++ E+G+ I + +Q + Sbjct: 68 VEKISSQVLEIKAKQKLHVAWCIIDSKSVEKVLASLNEIGVAKISFIYCDRSQKNFKPDF 127 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 R ++ +QC + + + + F D + L Sbjct: 128 KRYERILQASNQQCGRTQMMEFDIYENIADFIHKFPDTKVFDFTD---------KILEDG 178 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 A V LIG EGG+ +EKE L S + P ILRS+TA +A + Sbjct: 179 AEFKRV--LIGCEGGFSEKEKELLKSQEVFRLNT--PMILRSETAVLAVAS 225 >gi|317011277|gb|ADU85024.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori SouthAfrica7] Length = 226 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 25/239 (10%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 FV PL + K G+ Y +L R+K + L N D + + + K Sbjct: 3 FVYHPLAKEPTLKIEGESYTHLYRSRRIKIASVLDLRNLNDNFLYTYEHVEITKKHALLR 62 Query: 70 EYQSRSQT----KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-- 122 R K++ + IK+ ++ + + +G+ + ++Q Sbjct: 63 LVGQRELEVMTSKKTHLILSVIEIKSIEKMLPFLNQ---LGVNKLSLFYADFSQRNEKID 119 Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 ++R + I++ EQC L + + + +LK + + F +T + + EK Sbjct: 120 SAKLERFQKILINSCEQCGRSALMELEVFSNTKEMLKAYPKASVLDFNGKTLQTNFNAEK 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+E + + L +L+S++A V ++ Q Sbjct: 180 ----------GVIIGPEGGFSEPEREQFRERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|283955603|ref|ZP_06373096.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp. jejuni 1336] gi|283792828|gb|EFC31604.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp. jejuni 1336] Length = 218 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 23/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64 ++ F+ + + G+ +++L V R+KE + L N +D + I+ + + S Sbjct: 1 MQ--FLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 K+ + KQS++ + I L+ + E+G+ + V T ++Q + Sbjct: 58 CTLKLLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R IS+ EQC T + + + ++ + + + F E + E Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSHFDEKE---- 173 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 IGPEGG+ + E+ F SL IL+S TA +A + Sbjct: 174 -------LYFIGPEGGFSNNERLL-----FNRKTSLKSSNILKSQTAIIAIAS 214 >gi|208434976|ref|YP_002266642.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27] gi|208432905|gb|ACI27776.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27] Length = 226 Score = 109 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 33/243 (13%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ-KSVE--------MGMGAIRPVITRYTQNT 120 +R + + +I+ KSVE +G+ + ++Q Sbjct: 63 LVGARLLEVMASKKTHLILS-------VIEIKSVEKILPFLNQLGVSKLSLFYADFSQRN 115 Query: 121 HY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + I + EQC L + + + LK + + F ET + Sbjct: 116 EKIDSAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASM 175 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 EK ++IGPEGG+ E+E + + L +L+S++A V ++ Sbjct: 176 DFEK----------GVIIGPEGGFSEPEREYFKERE-IYRIPL-DMVLKSESACVFVASI 223 Query: 237 VQA 239 Q Sbjct: 224 AQV 226 >gi|317180814|dbj|BAJ58600.1| hypothetical protein HPF32_1018 [Helicobacter pylori F32] Length = 226 Score = 109 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K ++ L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASHLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQTLEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDNAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|270263053|ref|ZP_06191323.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13] gi|270042741|gb|EFA15835.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13] Length = 90 Score = 109 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 LE D + ++ S N+L + +V +LIGPEGG ++E Sbjct: 1 MQLEAWCAEQDGSLKLNLHPRASHSINTLPL-----PVDHVRLLIGPEGGLSADEIAMTT 55 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 F T + LGPR+LR++T A+ A+ +Q GD Sbjct: 56 GYGF-TDILLGPRVLRTETTALTAITALQVRFGD 88 >gi|317012853|gb|ADU83461.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Lithuania75] Length = 226 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPILKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I++ EQC L + + + +L + + F ET + EK Sbjct: 123 LERFQKILINSCEQCGRSALMELEVFSNTKEMLNAYPKASVLDFNGETLPASADFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|207091939|ref|ZP_03239726.1| 16S rRNA m3U1498 methyltransferase [Helicobacter pylori HPKX_438_AG0C1] Length = 226 Score = 108 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V+ Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVDAQPLEVIASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEAFSNTKEVLNAYPKASVLDFKGETLPTSVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPERGYFKEQK-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|57237164|ref|YP_178176.1| hypothetical protein CJE0152 [Campylobacter jejuni RM1221] gi|86149681|ref|ZP_01067911.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597460|ref|ZP_01100695.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 84-25] gi|148926325|ref|ZP_01810009.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp. jejuni CG8486] gi|157414473|ref|YP_001481729.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni 81116] gi|205356592|ref|ZP_03223355.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561837|ref|YP_002343616.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57165968|gb|AAW34747.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni RM1221] gi|85839949|gb|EAQ57208.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190521|gb|EAQ94495.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359543|emb|CAL34327.1| conserved hypothetical protein Cj0156c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844717|gb|EDK21822.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp. jejuni CG8486] gi|157385437|gb|ABV51752.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni 81116] gi|205345597|gb|EDZ32237.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925449|gb|ADC27801.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni subsp. jejuni IA3902] gi|307747117|gb|ADN90387.1| Putative uncharacterized protein [Campylobacter jejuni subsp. jejuni M1] gi|315057596|gb|ADT71925.1| Ribosomal RNA small subunit methyltransferase E [Campylobacter jejuni subsp. jejuni S3] gi|315927805|gb|EFV07131.1| RNA methyltransferase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930582|gb|EFV09615.1| RNA methyltransferase family protein [Campylobacter jejuni subsp. jejuni 305] gi|315931969|gb|EFV10922.1| RNA methyltransferase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 218 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64 ++ F+ + + G+ +++L V R+KE + L N +D + I+ + + S Sbjct: 1 MQ--FLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 K + KQS++ + I L+ + E+G+ + V T ++Q + Sbjct: 58 CTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R IS+ EQC T + + + ++ + + + F E + E Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSHFDEKE---- 173 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 IGPEGG++++E+ F +SL IL+S TA +A + Sbjct: 174 -------LYFIGPEGGFNNDERLL-----FNRKISLKSSNILKSQTAIIAIAS 214 >gi|308184819|ref|YP_003928952.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori SJM180] gi|308060739|gb|ADO02635.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori SJM180] Length = 226 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 FV PL + K G+ Y +L R+K + L N KD + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSFLYTYEHAEITKKHALLK 62 Query: 70 EYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 +R I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARPLEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFSNTKEMLNAYPKASVLDFKGETLPTSMGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|78778105|ref|YP_394420.1| hypothetical protein Suden_1911 [Sulfurimonas denitrificans DSM 1251] gi|78498645|gb|ABB45185.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 225 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 32/240 (13%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL--SKISYVG-KSIR 66 +++ + + Y YL V R KEGD + ++ E+L KI+ + +S Sbjct: 4 IYILDDEAGRKTLHVRAELYKYLIKVRRHKEGDILHFRTRENLEFLHAYKITLLEPRSAE 63 Query: 67 FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 + ++ K S ++ + I ++ ++ ++ E+G+ AI + +Q ++ +D Sbjct: 64 LTLISSETNELKSSKNLHIGWCIIDSSAIEKVLPALCEIGVEAITFISCERSQK-NFKLD 122 Query: 126 --RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R ++ +QC + +++ + + F D N L Sbjct: 123 FKRFERIQEASMQQCGRSSYIEFNTCKSVKEFITKYPDTKVFDFCD------NVLNDYSD 176 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG------PRILRSDTAAVAAMALV 237 I +LIG EGG+ E+E SLG P +LRS++A +A + + Sbjct: 177 IK-----TVLIGCEGGFSPNERELFK--------SLGSFRLDTPMVLRSESAVLAVASRI 223 >gi|15645002|ref|NP_207172.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori 26695] gi|6226368|sp|O25138|RSME_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|2313478|gb|AAD07443.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 226 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|317009689|gb|ADU80269.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori India7] Length = 226 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I++ EQC L + + + +L + + F ET + EK Sbjct: 123 LERFQKILINSCEQCGRSALMELEAFSNTKEMLNAYPKASVLDFKGETLPTSVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|297380257|gb|ADI35144.1| conserved hypothetical protein [Helicobacter pylori v225d] Length = 226 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMASKKMHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALNAYPKASVLDFKGETLPASVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQERECFKERE-IYRIPL-DMVLKSESACVFMASVAQV 226 >gi|224370617|ref|YP_002604781.1| 16S ribosomal RNA methyltransferase RsmE [Desulfobacterium autotrophicum HRM2] gi|223693334|gb|ACN16617.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 236 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 12/222 (5%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQ 72 ++ + SG ++ ++ V R + GD + NG+ G I+ + Sbjct: 10 DFTAPSRVEISGRRFDHIQKVHRAEVGDEFTTGMVNGRMG--TGTITAITPGRVEMTVTL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRV 127 + D+ + + + L ++Q +G+ + + + + ++ +++ Sbjct: 68 DQPPPPALDMTLVMALPRPKMLKRILQTVAGLGVKQLYLINSWRVEKGFWSAPVLEKEQI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 I EQ +P ++ ++ D I + + Sbjct: 128 NQALILGLEQAKDTIMPQVFLRRLFTPFIR--DELDTIAGDTLRLTAHPGGRAVCPCHPQ 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +V + +GPEGG+ E +T L F T ++LGPRILR +TA Sbjct: 186 KSVTLAVGPEGGFIQREVDTFEQLGF-TSVTLGPRILRVETA 226 >gi|83643944|ref|YP_432379.1| 16S ribosomal RNA methyltransferase RsmE [Hahella chejuensis KCTC 2396] gi|83631987|gb|ABC27954.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 235 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 13/226 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRF 67 LF L Q + + +L VL+ + GD+I + NG+ G +++ + Sbjct: 5 LFSAEELSASGQLTLTDRRAEHLRKVLKAQAGDDIRVGQINGEMG--TARLLDINDERAR 62 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--- 124 + D+ I + + + +IQ +V +G+ I + + + +++ Sbjct: 63 LEVNLNVEAPPPLDLTLILALPRPKMMRRVIQSTVSLGVKRIYLINSYKVEKSYWQTPWL 122 Query: 125 --DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 +R + EQ LP I+ + +++ + A + + Sbjct: 123 EASSLRENVLLGLEQGVDTLLPEIHMRKLFKPFVED---ELPGIIAGSDAWVAHPTSEAQ 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + + + +GPEGG+ E + L + F +LG RILR +T Sbjct: 180 SPQVNGPLTLAVGPEGGFTPYEVKKLEEIGF-KGFTLGKRILRVET 224 >gi|317178616|dbj|BAJ56404.1| hypothetical protein HPF30_0307 [Helicobacter pylori F30] Length = 226 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPILKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMASKKTHLILSVIEIKNVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKIK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEALKAYPKASVLDFKGETLPASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|254779634|ref|YP_003057740.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori B38] gi|254001546|emb|CAX29564.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 226 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 33/242 (13%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPTLKIEGESYIHLYRSRRIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ-KSVE--------MGMGAIRPVITRYTQNT 120 +R + + +I+ KSVE +G+ + ++Q Sbjct: 63 LVGARLLEVMASKKTHLILS-------VIEIKSVEKILPFLNQLGVSKLSLFYADFSQRN 115 Query: 121 HY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 ++R + I + EQC L + + LK + + F ET + Sbjct: 116 EKIDSAKLERFQKILIHSCEQCGRSALMELEAFPNTKEALKAYPKASVLDFKGETLPTSM 175 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 EK ++IGPEGG+ +E+ + + L +L+S++A V ++ Sbjct: 176 DFEK----------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASI 223 Query: 237 VQ 238 Q Sbjct: 224 AQ 225 >gi|317182333|dbj|BAJ60117.1| hypothetical protein HPF57_1043 [Helicobacter pylori F57] Length = 226 Score = 106 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVVASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|118475053|ref|YP_891431.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter fetus subsp. fetus 82-40] gi|118414279|gb|ABK82699.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 217 Score = 106 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 18/227 (7%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 F+ + GD +++L R GD I + N KDG ++ +I + ++ Sbjct: 3 FLYDENAKNEILEIKGDSFNHL-KARRQNVGDRIDIRNLKDGYSYIYEIIKFERKATCEL 61 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVR 128 ++S +++ SD+ ++ + + ++ + E+G+ I V T ++Q + DR R Sbjct: 62 VFKSLTKSLDSDLVLAWAVVDPSVIEKTLPSLNELGVKKIIFVYTDFSQRNIKLDFDRFR 121 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I +++QC ++ ++ LK + I F ++ + N E L Sbjct: 122 RILIGSSQQCGRNSIIEFEIFADIDEFLKVHKNVSLIDFGGDSLDNANGSEVL------- 174 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +G EGG+ ++E+ + + P IL+S+TA ++ + Sbjct: 175 ----FVGSEGGFSAQERVKFLNRYCLKC----PNILKSNTAIISVAS 213 >gi|283955406|ref|ZP_06372905.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp. jejuni 414] gi|283793166|gb|EFC31936.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp. jejuni 414] Length = 218 Score = 106 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 23/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64 ++ F+ + + G+ + +L R+KE + L N +D + I+ + + S Sbjct: 1 MQ--FLYNKQAGEELIQLQGESFKHL-KARRVKENSELNLRNLQDNFLYSYIITNLTRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 K + KQS++ + I L+ + E+G+ + V T ++Q + Sbjct: 58 CTLKFLDKKSQSIKQSELNLALAIIDIKVLEKTLSFLNELGVKKLHLVFTNFSQRNFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R IS+ EQC T + + ++ + + + F E N E Sbjct: 118 LERFEKIIISSCEQCGRNTKMDFIIHQSTQEFVQKFPNAIMVDFQGEKQSHFNEKE---- 173 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 IGPEGG+ + E+ F +SL IL+S TA +A + Sbjct: 174 -------LYFIGPEGGFSNNERLL-----FNQKISLKSSNILKSQTAIIAIAS 214 >gi|86151272|ref|ZP_01069487.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 260.94] gi|86153813|ref|ZP_01072016.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613031|ref|YP_999881.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni subsp. jejuni 81-176] gi|167004847|ref|ZP_02270605.1| hypothetical protein Cjejjejuni_00900 [Campylobacter jejuni subsp. jejuni 81-176] gi|315123761|ref|YP_004065765.1| hypothetical protein ICDCCJ07001_153 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841619|gb|EAQ58866.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 260.94] gi|85842774|gb|EAQ59986.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250118|gb|EAQ73076.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. jejuni 81-176] gi|315017483|gb|ADT65576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 218 Score = 106 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 23/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64 ++ F+ + + G+ +++L V R+KE + L N +D + I+ + + S Sbjct: 1 MQ--FLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 K + KQS++ + I L+ + E+G+ + V T ++Q + Sbjct: 58 CTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R IS+ EQC T + + + ++ + + + F + + E Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFIQKFPNAIMVDFQGKQQSHFDEKE---- 173 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 IGPEGG++++E+ F +SL IL+S TA +A + Sbjct: 174 -------LYFIGPEGGFNNDERLL-----FNRKISLKSSNILKSQTAIIAIAS 214 >gi|308062356|gb|ADO04244.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Cuz20] Length = 226 Score = 106 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEMLKAYPKASVLDFKGETLPASVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|308183185|ref|YP_003927312.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori PeCan4] gi|308065370|gb|ADO07262.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori PeCan4] Length = 226 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQTLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +LK + + F ET EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLKAYPKASVLDFKGETLPVSVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEQERGCFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|94263522|ref|ZP_01287333.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93456055|gb|EAT06202.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 240 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 21/240 (8%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRF 67 + V+ ++ + + ++ +LR + GD++ L +G G+ L I + + Sbjct: 4 ILVEPDEIKDSRVILTDHRARHIRKILRRQVGDSLRLGIVDGPLGQGL--IKNLERDSVL 61 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--- 124 + + + I + + L ++ ++ MG+G I + + + + Sbjct: 62 LELCCTTPPPAKIATELILALPRPIMLKRVLAQATAMGVGRIMLINAGRVEKSFWQSSQL 121 Query: 125 --DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGSEN 176 ++ EQ LP + +++ D+ +++ + Sbjct: 122 ADQHLQAALRQGLEQAGDTRLPRLSLHRRFRPFIEDELAPLAGDYPRRLLAHPLPTATLP 181 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 S A + IGPEGG+ E F SLG RILR DTA A +A Sbjct: 182 S-----EPAPSGRQLLAIGPEGGWLDFEVAAFRDQGF-QFFSLGSRILRVDTAVPALLAA 235 >gi|182412505|ref|YP_001817571.1| hypothetical protein Oter_0682 [Opitutus terrae PB90-1] gi|177839719|gb|ACB73971.1| protein of unknown function DUF558 [Opitutus terrae PB90-1] Length = 247 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 39/248 (15%) Query: 12 VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNG----------KDGEWLSKIS 59 ++ PL + ++ VL GD + NG DG++ + Sbjct: 20 INRPLAAG------DPRVRHVLAVLHRAAGDAFDAGIINGPRGKARLRPRADGDYDCEF- 72 Query: 60 YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR---- 115 + + + + + +++ + +G+ A+ V T Sbjct: 73 -----------TPTAEPPPAAPIALVIGLPRPQTARDILRDATTLGVQALHFVATEKGDP 121 Query: 116 -YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 Y + + R + + AEQ LP + +L ++ D + Sbjct: 122 NYASSALWRSGEWRRHVVIGAEQAFCTRLPEVTHGRSLAEVVAALMPGEARFALDNYEAA 181 Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + P V + IG E G+ + E+ L F T LG R+LR++TA +AA+ Sbjct: 182 QPLA---RSEIDAPRVTLAIGAERGWSTPERALLRHHGF-TFAHLGERVLRTETACIAAI 237 Query: 235 ALVQAICG 242 LV+A G Sbjct: 238 TLVRAALG 245 >gi|261839813|gb|ACX99578.1| hypothetical protein HPKB_1009 [Helicobacter pylori 52] Length = 226 Score = 105 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGGRKLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEVLKAYPKASVLDFKGETLPASVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 ++IGPEGG+ E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225 >gi|217034479|ref|ZP_03439891.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10] gi|216943081|gb|EEC22558.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10] Length = 226 Score = 105 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKIK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC TL + + LK + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSTLMELEVFLNTKEALKAYPKASVLDFKGETLPASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S+ A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQERGYFKERE-IYRIPL-DMVLKSENACVFVASVAQV 226 >gi|115374869|ref|ZP_01462142.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115368087|gb|EAU67049.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 D + +G + + VLR + G+ + + ++ + + + Sbjct: 25 DEDFLPDGTARLTGRRAQHAREVLRAEPGERLRVGRLGGLVGTGEVLENSEGVLRLSAHL 84 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RV 127 + + ++ V + + + L ++ +G+ + V + ++++ + Sbjct: 85 TEAPPPRAGVDLLLAIPRPKALKKVLPAVASLGVDRVVLVNAARVEKSYFDSKVLAAGSI 144 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IA 185 + + EQ LP + +++ A + + L A + Sbjct: 145 QELLLQGLEQARDTRLPEVLVRERFRPFVEDELDAVLGAQALRLLPHPPARQPLTATRVG 204 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P V + IGP+GG+ E L + F P +LGPRILR +TA + V + Sbjct: 205 TAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETAVPVLLGQVALL 258 >gi|254445599|ref|ZP_05059075.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae bacterium DG1235] gi|198259907|gb|EDY84215.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae bacterium DG1235] Length = 248 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRF 67 LF + ++ +++ VLR GD +G G +++ + Sbjct: 12 LFEACEVEAGGSLSMDDERANHVVKVLRRGVGDTFDAGMIDGPKG--KARVLGISDEGIE 69 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122 + + + I + + ++ ++ +G+ +IR V+T + + + Sbjct: 70 LGFEWGVEEPELLAIDLIVGLSRPQTMRKILNEATTLGVRSIRFVVTDRGEPSYAGSKLW 129 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + R + ++ Q +P + +LE ++ + + D G E Sbjct: 130 STGEWRRHVVAGVAQAFTTRMPEVSWGMSLEEAMEAVGDVSERLCLDNYEGLMRLGEVRG 189 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 +P VA+ IG E G+ E++ + + T + +G R+LR++T Sbjct: 190 GARTLP-VALTIGSERGWTCRERDLFRARGW-TLVGMGERVLRTET 233 >gi|261838413|gb|ACX98179.1| hypothetical protein KHP_0982 [Helicobacter pylori 51] Length = 226 Score = 104 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQERGYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|306836633|ref|ZP_07469599.1| RsmE family RNA methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567463|gb|EFM43062.1| RsmE family RNA methyltransferase [Corynebacterium accolens ATCC 49726] Length = 247 Score = 104 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 34/237 (14%) Query: 11 FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65 F+ L SG + + V RM++G+ + L +G ++ + Sbjct: 6 FIHPDLSAAQAGDAITLSGPEARHAVTVKRMQQGEKLALIDGTGIRLTLTVTETSGKDHL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 VE ++ V + + K+ R + + + + G I + Sbjct: 66 TGTVESVTQLPEPNPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGS- 174 + + + +AA+Q +P + P T + L + + +V +E S Sbjct: 126 APKAITKWQAAAEAAAKQSRRDRIPQVRGPLTTRQLVAELAERAESASVLVLHEEATESI 185 Query: 175 -----ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + L L TL V + LGP +LR+ Sbjct: 186 REVGLHGEVFLLVGPEGGIGEEEL------------TTLREAGAV-AIKLGPEVLRT 229 >gi|329894524|ref|ZP_08270338.1| Protein of unknown function (DUF558) family [gamma proteobacterium IMCC3088] gi|328923049|gb|EGG30374.1| Protein of unknown function (DUF558) family [gamma proteobacterium IMCC3088] Length = 238 Score = 104 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 15/228 (6%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTKQ 79 + + + + + VLR + G ++ + L I + V R +K+ Sbjct: 16 EAQLNPSAHRHCIEVLRPQVGHSLKVGVYGGKLGLGTVIEHTETRTVLDVTLSERPPSKE 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTISA 134 + + + + L ++ S+E+G+ AI + + + +++ D V ++A Sbjct: 76 P-ICLVLALPRPKMLRRILSASIELGVEAIHIINSYRVEKSYWQSPYLKPDAVDRTILTA 134 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 EQ P + + ++ + + G L+ I I Sbjct: 135 LEQAGDTVPPSLRWHKGFKPFAEDILPGLARSYPNAWLGDHRVQSSLNTNRSDEPRLIAI 194 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 GPEGG+ E + L +TP++LG RI+R +TA V A+ G Sbjct: 195 GPEGGFIPYEIDLLQKAG-LTPVNLGARIMRVETA-------VSALLG 234 >gi|310820109|ref|YP_003952467.1| hypothetical protein STAUR_2848 [Stigmatella aurantiaca DW4/3-1] gi|309393181|gb|ADO70640.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 248 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 D + +G + + VLR + G+ + + ++ + + + Sbjct: 8 DEDFLPDGTARLTGRRAQHAREVLRAEPGERLRVGRLGGLVGTGEVLENSEGVLRLSAHL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RV 127 + + ++ V + + + L ++ +G+ + V + ++++ + Sbjct: 68 TEAPPPRAGVDLLLAIPRPKALKKVLPAVASLGVDRVVLVNAARVEKSYFDSKVLAAGSI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IA 185 + + EQ LP + +++ A + + L A + Sbjct: 128 QELLLQGLEQARDTRLPEVLVRERFRPFVEDELDAVLGAQALRLLPHPPARQPLTATRVG 187 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P V + IGP+GG+ E L + F P +LGPRILR +TA + V + Sbjct: 188 TAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETAVPVLLGQVALL 241 >gi|308063864|gb|ADO05751.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Sat464] Length = 226 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 23/238 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 ---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--- 122 V+ +K++ + IK+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGVQALEVMASKKTHLILSVIEIKS--IEKILPFLNQLGVSKLSLFYADFSQRNEKIDS 120 Query: 123 -NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 121 AKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEK- 179 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++VQ Sbjct: 180 ---------GVIIGPEGGFSGQERGCFKERE-IYRIPL-DMVLKSESACVFVASVVQV 226 >gi|330837538|ref|YP_004412179.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta coccoides DSM 17374] gi|329749441|gb|AEC02797.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta coccoides DSM 17374] Length = 241 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 91/238 (38%), Gaps = 18/238 (7%) Query: 17 CIKTQGKASGDQYH--YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKS-IRF--KV 69 + + ++ HVLR+ EGD+ + NG G +KI + +S IRF Sbjct: 8 NLDADSFLPASDFRYGHIIHVLRLHEGDSFSAGIVNGASG--HAKIESLDESGIRFSWTQ 65 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-- 127 E + Q V + + ++ + +++ + +G+ + + ++ Sbjct: 66 EKEGDEARGQVPVTLLVAQVRPICMKRILRDAAMLGVSRLIVSGADTAEKSYQAAGLWSD 125 Query: 128 ---RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 Y + A Q P + ++ + + D T EN+ Sbjct: 126 GEYMKYLLDGAMQAVGTGFPEFFLTPSVNHAARLLSPHAAHFLLDNT---ENAPLFSAGD 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 A + IGPE G+ E++ F + SLG R+LR++TA V A+A+ G Sbjct: 183 AITKACTVAIGPERGWSDRERQFFLESGF-SVFSLGGRVLRTETACVVAVAMAMHRLG 239 >gi|92113035|ref|YP_572963.1| hypothetical protein Csal_0907 [Chromohalobacter salexigens DSM 3043] gi|91796125|gb|ABE58264.1| protein of unknown function DUF558 [Chromohalobacter salexigens DSM 3043] Length = 236 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 86/234 (36%), Gaps = 9/234 (3%) Query: 10 LFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 LF D + S + +L V R + GD + + ++ + + Sbjct: 5 LFDDRDRLDTRHVRLSDPERLRHLRDVQRAEPGDELSVGLLGGRWGRGRLLSLDAAGAVF 64 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYN 123 + R V + + + L ++ +G+ + + TR + + Sbjct: 65 EIHLDRDPPAPLPVHLLLALPRPRMLARTLEHVTALGVKRLTLLHTRRVEKSYWQSPELR 124 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 +++R + + EQ LP + + +++ + + + + Sbjct: 125 PEKIRHHLLLGLEQARDTQLPHLDFEPRFKPFIEDRLPGQ--LAGRRALIAHPGMAETCP 182 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + +GPEGG+ E E L +L F T + LG RILR +TA A +A + Sbjct: 183 RGLAEPVTLAVGPEGGFIPYEVERLQALGF-TGVHLGERILRVETAVTALLARL 235 >gi|220918289|ref|YP_002493593.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] gi|219956143|gb|ACL66527.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-1] Length = 247 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 24/242 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70 L + +G + ++ VLR GD I + G+ GE ++I Sbjct: 8 PGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGE--AEILTATPDEVVIAA 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMD 125 R S V + + + L ++Q + MG+ + + + + + D Sbjct: 66 SPDREPPPPSPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPD 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEK 180 +R + EQ LP + + +++ + +++ + Sbjct: 126 AIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHP-----AGAAPL 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQA 239 P A+ IGPEGG+ E L F P +LGPR+LR D AAV A+ QA Sbjct: 181 EALAPAGPRAALAIGPEGGWTPYEAAALRDRGFA-PFTLGPRVLRVD-AAVPYAVG--QA 236 Query: 240 IC 241 Sbjct: 237 EL 238 >gi|325970602|ref|YP_004246793.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] gi|324025840|gb|ADY12599.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp. Buddy] Length = 239 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 94/238 (39%), Gaps = 16/238 (6%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGK-SIRFKV 69 L + + + ++ +LR+KEG++ ++ GK + ++ + K I F+ Sbjct: 7 EALSAQNELPMQDPRAQHICKILRLKEGESFQAGIINVGKG---TATLTALEKERITFRF 63 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124 + K V + S ++ + ++++SV +G+ I T + ++ Sbjct: 64 VLEETESAKLYPVTLLVSQVRPICMRRILRESVSLGVERIILCTTETGEKSYAQATLYTS 123 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 + + A Q + + ++ + + + Q + D S + Sbjct: 124 GEYHSILLDGAMQSGKCGVSAVQFAPSVASAMHLLEQDSQRIVLDNVRESTSLARY---A 180 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 H +V + IG E G+ E+ F SLG RILR++TA A +A++ G Sbjct: 181 LHASSVVLAIGGERGFTDNERTLFDLNGFSFA-SLGSRILRTETACSAGLAVLLGRMG 237 >gi|108563443|ref|YP_627759.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori HPAG1] gi|107837216|gb|ABF85085.1| hypothetical protein HPAG1_1018 [Helicobacter pylori HPAG1] Length = 226 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASVLDLRNLKDGFLYTYEHAEITKKHALLK 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + +LK + + F ET EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEVLKAYPKASVLDFKGETLPISVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226 >gi|90415836|ref|ZP_01223769.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium HTCC2207] gi|90332210|gb|EAS47407.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium HTCC2207] Length = 236 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 12/235 (5%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRF 67 L + + SG Q+ +L V R + GD++ + +G G I +G Sbjct: 4 LLLKPDQITQQSATVSGRQFDHLLTVQRAQVGDSVRIGVIDGPMG--QGIIKALGSEQAT 61 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---- 123 ++ I + + L +Q MG+ I V + + + + Sbjct: 62 LEITLDSPPPPAIPLRLILALPRPKMLRRTLQSITAMGVKEIYLVNSSRVEKSFWQSPFL 121 Query: 124 -MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + I EQ +P ++ + ++ D I + + E Sbjct: 122 QPEALEEQMILGLEQARDTQMPNLHLRKRFKPFVE--DELGNIAKGSQALVAHPVTEVPC 179 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I V + IGPEGG+ E E L S+ F + LGPRILR + A A ++ + Sbjct: 180 PINCDSAVTLAIGPEGGFIPYEIELLSSIGF-QSVHLGPRILRVEVAVPALISRL 233 >gi|210135240|ref|YP_002301679.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori P12] gi|210133208|gb|ACJ08199.1| hypothetical protein HPP12_1047 [Helicobacter pylori P12] Length = 226 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V + I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGGRKLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSEPERECFKERE-IYRIPL-DMVLKSESACVFMASIAQV 226 >gi|109947089|ref|YP_664317.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter acinonychis str. Sheeba] gi|109714310|emb|CAJ99318.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 226 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSK-ISYVGKSIRFK 68 FV PL + K G+ Y +L R+K + L N KD + + + K + Sbjct: 3 FVYHPLAKEPTLKIEGESYTHLYRSRRIKSASGLDLRNLKDSFLYTYEHVEITKKHALLR 62 Query: 69 VEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 + Q + S I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGQKELEIMASKKTHLILSVIEVKSIEKILPFLNQLGVNKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I++ EQC L + + + +LK + C + F + + S EK Sbjct: 123 LERFQKILINSCEQCGRGALMELEVFSNTKEMLKAYPKACVLDFNGKMLQTNFSAEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +EK + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSKQEKGQFKERE-IYRIPL-DMVLKSESACVFVASITQV 226 >gi|291548149|emb|CBL21257.1| RNA methyltransferase, RsmE family [Ruminococcus sp. SR1/5] Length = 95 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212 E L+ + + ++ + G + + E + +I ++ + IGPEGG+ +E Sbjct: 5 EALVYAKELDVLLIPYELAKGMKETKELIRSIEPGKSIGVFIGPEGGFEEQEVADAMEAG 64 Query: 213 FVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 P++LG RILR++TA +A ++++ D Sbjct: 65 -AKPITLGHRILRTETAGLAVLSVLMFQLED 94 >gi|332673881|gb|AEE70698.1| RsmE family RNA methyltransferase [Helicobacter pylori 83] Length = 226 Score = 103 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L +K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRHIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGTQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPTSVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|317177831|dbj|BAJ55620.1| hypothetical protein HPF16_1023 [Helicobacter pylori F16] Length = 226 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKIK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEMLNAYPKASVLDFKGETLSASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQERGYFKECE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|71029718|ref|XP_764502.1| hypothetical protein [Theileria parva strain Muguga] gi|68351456|gb|EAN32219.1| hypothetical protein TP04_0865 [Theileria parva] Length = 295 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 98/235 (41%), Gaps = 19/235 (8%) Query: 23 KASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTK- 78 + ++L +VL++ G + + N ++ + + K SI+ K+ R Sbjct: 54 IIDKNTVNHLLNVLKVHVGKLLKVGILN-STLDY-GVVESITKWSIKLKLSENFRLFPPV 111 Query: 79 --QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYT 131 + V + + LD ++Q S +G+G I + + + + + + + Sbjct: 112 IEKPVVDLVVGIPRPKSLDKLLQYSASIGVGNIDLICSSRVEKSYLASHKLSKESINKSL 171 Query: 132 ISAAEQCDILTLPFIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I +Q +P + ++ E K D+ +++ ++ + SL KL+ P Sbjct: 172 ILGLQQGVCTLMPEVNMYLSMGEYERACKQKDYAMKLIAHPDSEETLGSL-KLNTHVKGP 230 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + + IGPEGG+ E L FV L RILR++ AA A ++ + + D Sbjct: 231 -ILVAIGPEGGWLDHELTYYKKLGFVQF-KLTDRILRTEVAAAAILSQMSLLLND 283 >gi|153951044|ref|YP_001397414.1| hypothetical protein JJD26997_0171 [Campylobacter jejuni subsp. doylei 269.97] gi|152938490|gb|ABS43231.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni subsp. doylei 269.97] Length = 218 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 23/233 (9%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64 ++ F+ + + G+ +++L R++E + L N +D + I+ + + S Sbjct: 1 MQ--FLYNKQAGEEFIQLQGENFNHL-KARRVRENSELNLRNLQDNFLYSYTITDLTRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 K + +QS + + I L+ + E+G+ + V T ++Q + Sbjct: 58 CTLKFLNKKLQNIEQSKLNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R IS+ EQC T + + + ++ + + F E + E Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPDAIMVDFQGEQQSHFDEKE---- 173 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 IGPEGG++++E L F +SL IL+S TA +A + Sbjct: 174 -------LYFIGPEGGFNNDE-----KLLFNRKISLKNSNILKSQTAIIAIAS 214 >gi|331082511|ref|ZP_08331636.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400489|gb|EGG80119.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium 6_1_63FAA] Length = 95 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 150 TTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 + + + ++F E G + + E + I +V I IGPEGG+ E Sbjct: 1 MSFQQAVDYAGKLDIVLFPYELADGMKKTKEIIGKIKPGQSVGIFIGPEGGFEESEVALA 60 Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 ++LG RILR++TA + +A++ Sbjct: 61 KEKADAQVITLGKRILRTETAGLTVLAILMYTL 93 >gi|329728385|gb|EGG64822.1| RNA methyltransferase, RsmE domain protein [Staphylococcus aureus subsp. aureus 21189] Length = 106 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEG 198 +P I + L+ + D+ I+ A E + L + L V ++ GPEG Sbjct: 2 IPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGPEG 61 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 G E + T + LGPRILR++TA + A++ + Sbjct: 62 GLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAISYE 101 >gi|90021867|ref|YP_527694.1| 16S ribosomal RNA methyltransferase RsmE [Saccharophagus degradans 2-40] gi|89951467|gb|ABD81482.1| protein of unknown function DUF558 [Saccharophagus degradans 2-40] Length = 245 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 100/252 (39%), Gaps = 28/252 (11%) Query: 1 MKIH----SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEW 54 M+ H S + L +D ++ +G+++ ++ VL++++GD + + NG G Sbjct: 1 MQAHNYAPSRMNLLLLDNA-ENDSRAVVTGERHQHIRKVLKLQQGDTLRVGIINGPVG-- 57 Query: 55 LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK-SVEMGMGAIRPVI 113 ++ ++ + + + + I + + + ++Q + MG+ + + Sbjct: 58 IATVAEQSDTSTTLQLSINSPASPPLPLTLILALPRPQMIKRILQTIAT-MGVHELHLIQ 116 Query: 114 TRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNC 163 T + + + +R EQ LP ++ ++ N Sbjct: 117 TGKVEKSFWQSPAVTDQAIREQLTLGLEQGVATHLPTVHKHMRFRPFAEDVLPSITPTNK 176 Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 +++ S SL+ A ++IGPEGG+ E E + + P+ LG R+ Sbjct: 177 KLIAHLGDYPSCPSLQPKEAC------TMVIGPEGGFTEREVENFVNNGY-QPVQLGARV 229 Query: 224 LRSDTAAVAAMA 235 L+ +TA ++ Sbjct: 230 LKVETAVPVIIS 241 >gi|218678184|ref|ZP_03526081.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894] Length = 105 Score = 101 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + ++RLFVD PL +AS DQ++YLA+VLRM+ G ILLFNG+DGEW + +++ Sbjct: 1 MRANFRMQRLFVDAPLSAGAALEASADQFNYLANVLRMEAGAEILLFNGRDGEWKATLTF 60 Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIF 86 K I+ ++R Q + Sbjct: 61 PTRKRIQLTATEETRPQPTPAICITCL 87 >gi|108757437|ref|YP_630256.1| 16S ribosomal RNA methyltransferase RsmE [Myxococcus xanthus DK 1622] gi|108461317|gb|ABF86502.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK 1622] Length = 254 Score = 101 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 87/242 (35%), Gaps = 16/242 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 D + +G + + VLR + G+++ + + ++ + Sbjct: 8 DEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGVLHLRVTL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV----- 127 + ++ + + + + L ++ +G+ I + + ++++ + Sbjct: 68 TEPPPPRAGIDLLLAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSKVLDPAFV 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGSENSLEKL 181 I EQ LP + +++ +++ S +L Sbjct: 128 HELLIQGLEQARDTRLPEVLVRERFRPFVEDELDAFFGPQTLRLLPHPPARQSLRAL--- 184 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + V + IGP+GG+ E + L + F P SLGPRILR +TA A + V + Sbjct: 185 -GVGLAQRVVLAIGPDGGWVPFEADLLEAHGF-HPFSLGPRILRVETAVPALLGQVALLR 242 Query: 242 GD 243 D Sbjct: 243 ED 244 >gi|188527861|ref|YP_001910548.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori Shi470] gi|188144101|gb|ACD48518.1| hypothetical protein HPSH_05545 [Helicobacter pylori Shi470] Length = 226 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 23/238 (9%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 ---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--- 122 V+ +K++ + IK+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGVQALEVMASKKTHLILSVIEIKS--VEKILPFLNQLGVSKLSLFYADFSQRNEKIDS 120 Query: 123 -NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 ++R + I + EQC L + + +L + + F ET + EK Sbjct: 121 AKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEK- 179 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+ + + L +L+S++A V ++ Q Sbjct: 180 ---------GVIIGPEGGFSGQERGCFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226 >gi|315586970|gb|ADU41351.1| RsmE family RNA methyltransferase [Helicobacter pylori 35A] Length = 226 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68 FV PL + K G+ Y +L R+K + L N KDG + + + + K Sbjct: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62 Query: 69 -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123 V Q+ I S I+ ++ ++ ++G+ + ++Q Sbjct: 63 LVGAQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++R + I + EQC L + + + +L + + F ET + EK Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEVLNAYPKASVLDFKGETLPASVDFEK--- 179 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 ++IGPEGG+ +E+E + + L +L+S++ V ++ Q Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESVCVFVASVAQV 226 >gi|330501467|ref|YP_004378336.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] gi|328915753|gb|AEB56584.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina NK-01] Length = 236 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 7/230 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 D + + +G + +L V R + GD + + ++ + Sbjct: 8 DADFVGVDRVRLTGRRLKHLHEVHRAEAGDLLRVGRLGGMMGEGRLIALDAGQAELQVNL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRV 127 + + + I + + L ++Q MG+ + V + + + + + + Sbjct: 68 DQPPPAKLPLTLILALPRPKMLKRVLQTVSAMGVPRLVLVNSYRVEKSFWQTPFLKAEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ T + A+ Sbjct: 128 REQLILGLEQARDTVLPEVSIEKRFKPFVEDRLPALAAGTLGLTGHPGDHPACPRAVQEP 187 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E E L + P+ LG RILR +TA A +A + Sbjct: 188 --VTLAIGPEGGWTPYEVELLREAAGLQPVQLGERILRVETAVPALLARL 235 >gi|57505792|ref|ZP_00371717.1| conserved hypothetical protein TIGR00046 [Campylobacter upsaliensis RM3195] gi|57015822|gb|EAL52611.1| conserved hypothetical protein TIGR00046 [Campylobacter upsaliensis RM3195] Length = 217 Score = 100 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 24/233 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-S 64 ++ L+ + +++ +L V R+KEG+++ L N D + +IS + + S Sbjct: 1 MQFLYHKE--AKNSSIFLEKEEFLHL-KVRRVKEGESLNLRNLQDDFLYTYRISDLKRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYN 123 + Q + T +S V I+ ++ ++ EMG+ + V ++Q + Sbjct: 58 CVLSLISQEENLTFKSGVNLALGVIEPKIVEKILPFFNEMGLEKLILVYCEFSQKKFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ I++ +QC L I ++ L + + F E + Sbjct: 118 KKRLEKILINSCQQCGRGDLMRIEIYENVDSFLAIYPKVVLVDFEGEKKEFD-------- 169 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 + +G EGG+ E+ + + L P IL+S +AA+ ++ Sbjct: 170 ----KDTLYFVGAEGGFSESERRRIKDK-----IVLNSPFILKSQSAALGVLS 213 >gi|157164135|ref|YP_001466041.1| hypothetical protein CCC13826_1151 [Campylobacter concisus 13826] gi|112801233|gb|EAT98577.1| conserved hypothetical protein [Campylobacter concisus 13826] Length = 218 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 27/232 (11%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-SIRFK 68 F+ + + K + + +L R++ G+ I + N E++ +I + + S Sbjct: 3 FLYDKNAGEERLKIVNEAFLHL-KARRVEAGERISVRNLYDGKEYIYEIDEIERRSANLS 61 Query: 69 VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMGMGAIRPVITRYTQ-NTHYN 123 + + S + + D ++ + I+K++ E+G+G I V T+++Q N + Sbjct: 62 LVFASLNCEHKFDFTIAWAVVDPK----TIEKALPFLNELGVGKIAFVYTKFSQANFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 ++++ + EQC +L L+ L+ + + I F G +N EK Sbjct: 118 LEKLNYINALSCEQCGRTSLMEFEIYKNLDELMNVYKNVSAINF-----GGKNLNEKRDD 172 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 ++IGPEGG+ +E ++ + ILRS TA ++ A Sbjct: 173 E------ILIIGPEGGFSEDETAKFKNIYGLNT----KNILRSQTAVISVAA 214 >gi|154173682|ref|YP_001407502.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter curvus 525.92] gi|112803794|gb|EAU01138.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 217 Score = 99 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 22/220 (10%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQT 77 K + + +L R K G+ + L N KDG ++L +I G K R ++ + S Sbjct: 12 ENLKIINEAFLHL-KARRAKVGERVNLRNLKDGKDYLYEIEEFGRKDARLRLVFTSTLTV 70 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAE 136 + ++ + ++ I E+G+G + V T+++Q N ++ R+ + + E Sbjct: 71 RDYKFSLAWAVVDPKTIEKTIPFLNELGVGKLIFVYTKFSQANFKIDVKRLEYISALSCE 130 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC +L L+ L + + F G +N + + IGP Sbjct: 131 QCGRDSLMSFEIYKNLDEFLAVYKDVALVNF-----GGKN-------LTEYKGELLFIGP 178 Query: 197 EGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 EGG+ EE ++ + SL ILRS TAAV+ + Sbjct: 179 EGGFALEETRKIN-----SSYSLDTNSILRSQTAAVSVAS 213 >gi|254456868|ref|ZP_05070296.1| conserved hypothetical protein TIGR00046 [Campylobacterales bacterium GD 1] gi|207085660|gb|EDZ62944.1| conserved hypothetical protein TIGR00046 [Campylobacterales bacterium GD 1] Length = 227 Score = 99.6 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 20/232 (8%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD--GEWLSKISYVGKSIRF 67 +++ K G+ + YL + R GD + N D ++ V Sbjct: 6 IYILHDEASKKSLSIKGELHKYLVKIRRHSVGDELNFRNRDDIKTLHKYRVVQVESRAVE 65 Query: 68 KVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 S+ + QSD Q + I ++ ++ E+G+ I + +QN + +D Sbjct: 66 LELISSKEEITQSDKQLHIAWCVIDAKSIEKVLPSLNEIGVEKISFIYCDRSQN-NIKLD 124 Query: 126 --RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R ++ +QC + +++ + ++ F D S+ E+ Sbjct: 125 FKRFERILEASMQQCGRSSYMEFDTYKSIKEFITEFEDVKVFDFCDNILDSDADFER--- 181 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +L+G EGG+ E+E L + P +LRS++AAVA + Sbjct: 182 --------VLVGCEGGFSQVERELLSKKENFRLDT--PMVLRSESAAVAIAS 223 >gi|218509849|ref|ZP_03507727.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli Brasil 5] Length = 103 Score = 99.2 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P L LL W +I++ DE +N L L AI ++A+L+GPEGG+ Sbjct: 2 IPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-RHLALLVGPEGGFSE 60 Query: 203 EEKETLHSLPFVTPLSLGPRILR 225 EE+ L SL FVT + LGPRILR Sbjct: 61 EERARLRSLDFVTAIPLGPRILR 83 >gi|262373735|ref|ZP_06067013.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311488|gb|EEY92574.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 236 Score = 99.2 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 24/227 (10%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 Q +L L++K GD + + +L+++ + Q+ S + V I + Sbjct: 24 QIKHLNQHLQLKAGDTLKVGVRDGQRYLTEVQSITAQQIMLRPIQTESVPNKVPVHLILA 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L MI +V +G+ I + + +++ + ++ Y EQ +P Sbjct: 84 LPRPKVLRRMIMDAVTLGVERISLIHSYRVDKSYWQSPFLQQLDDYVTLGLEQAGDTIVP 143 Query: 145 FIYPPTTLEFLLKN------WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 I + +++ + V S HAIAH N +++GPEG Sbjct: 144 EIQLYKRFKPFVEDVLPTLISEQRPAYVAHPYAEQSMP-----HAIAHGCN--LIVGPEG 196 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 G+ E E L +SLG RILR++TA V I G + Sbjct: 197 GFIPYEIELLKKNG-CQAMSLGNRILRTETA-------VSNILGRLF 235 >gi|110834247|ref|YP_693106.1| 16S ribosomal RNA methyltransferase RsmE [Alcanivorax borkumensis SK2] gi|110647358|emb|CAL16834.1| conserved hypothetical protein TIGR00046 [Alcanivorax borkumensis SK2] Length = 238 Score = 98.8 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 18/221 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + + + Q +++ VL++ EG ++ I + K+ +VE++ S + Sbjct: 14 GNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVI-KNNEIEVEFKPESNSI 72 Query: 79 QS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTI 132 Q+ + + + + L ++ + +G+ I + + + + D +R I Sbjct: 73 QALPLSLLMALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMI 132 Query: 133 SAAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 EQ LP + E L +W Q + A G +L A Sbjct: 133 LGLEQARDTHLPELTLAPRFKPFVEDSLNDWAGTGQRILAH--PGDHPALPCNLA----E 186 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 V + IGPEGG+ E E L F S G RILR +TA Sbjct: 187 PVTLAIGPEGGWTDYEVEMLQQQGFACR-SFGARILRVETA 226 >gi|156089341|ref|XP_001612077.1| hypothetical protein [Babesia bovis T2Bo] gi|154799331|gb|EDO08509.1| conserved hypothetical protein [Babesia bovis] Length = 265 Score = 98.8 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 16/225 (7%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDVQYIFS 87 ++ +VL+ G I + I+ + ++R ++ S ++ + + Sbjct: 30 HIKYVLKATVGKQIRCGIVSSTIDVGTITCLSPQAITVRLSDKFLSDVPPERPLIDLVVG 89 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR-TYTISA----AEQCDILT 142 + LD ++Q S MG+G I V + + + ++ + EQ Sbjct: 90 IPRPRSLDKLLQYSASMGVGRILLVCSSRVELDYLKSHQLEMQNIEESLLLGMEQGVTTY 149 Query: 143 LPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEG 198 +P + +L L L+ +++ G+E++L L +H+ + + IGPEG Sbjct: 150 MPEVQIHRSLGSLQRSLEKEPMATRLIAHP---GTEDTLGSLGITSHLSGPILVAIGPEG 206 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 G+ E + SL F ++G RILR++ AAVA ++ +Q + D Sbjct: 207 GWLDHEVDFYASLGFRKF-NIGERILRAEVAAVAIISQLQLLLND 250 >gi|218680825|ref|ZP_03528722.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894] Length = 105 Score = 98.4 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + P L LL W +I++ DE +N L L AI ++A+L+GPEGG+ Sbjct: 4 IPEVAEPVKLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-KHLALLVGPEGGFSE 62 Query: 203 EEKETLHSLPFVTPLSLGPRILR 225 EE+ L SL FVT + LGPRILR Sbjct: 63 EERARLRSLDFVTAIPLGPRILR 85 >gi|148652676|ref|YP_001279769.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter sp. PRwf-1] gi|148571760|gb|ABQ93819.1| protein of unknown function DUF558 [Psychrobacter sp. PRwf-1] Length = 237 Score = 98.0 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 19/234 (8%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK 78 Q ++ VL++ GD++ + + IS + I + + Sbjct: 15 QTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQIILTDMVLTTAPPA 74 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAA 135 + ++ I + + L +I +G+ I V + T +++ + R+ + Sbjct: 75 KLNLTVILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQSPMLTRLDEFVHEGL 134 Query: 136 EQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191 +Q P IY + +++ W Q V A + S +P + Sbjct: 135 QQGMDTVPPNIYLKKRFKPFVEDELSLWAQAQQAVVAHPYAAT--SFSDWSDRNGLPQI- 191 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 + IG EGG+ E E LH+ ++LG RILR++ A V A+CG ++ Sbjct: 192 LCIGAEGGWIEYEIELLHNNG-CHSVNLGDRILRTE-------AAVNALCGRYF 237 >gi|224532070|ref|ZP_03672702.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511535|gb|EEF81941.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 238 Score = 98.0 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 16/227 (7%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++KE D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDARAEHLVKILKLKENDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIEE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G+ I T T+ + + + Sbjct: 69 SNKLKKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q + LP I L+ L+ F + +NS + L I I N Sbjct: 129 LIAGAMQGGVTYLPKIKIMKNLKDSLQYIKQE---NFEIKILLEKNSKKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 I++GPE G+ +EK+ + F +P ++ ILR++TA +AA +++ Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SPYNISSNILRTETAIIAA-SII 230 >gi|315638086|ref|ZP_07893271.1| RsmE family RNA methyltransferase [Campylobacter upsaliensis JV21] gi|315481934|gb|EFU72553.1| RsmE family RNA methyltransferase [Campylobacter upsaliensis JV21] Length = 217 Score = 97.7 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 24/233 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-S 64 ++ L+ + +++ +L V R+KEG+++ L N D + +I + + S Sbjct: 1 MQFLYHKE--AKNSSIFLEKEEFLHL-KVRRVKEGESLNLRNLQDDFLYTYRIGDLKRNS 57 Query: 65 IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123 + Q + T +S V I+ ++ ++ EMG+ + V ++Q + Sbjct: 58 CVLSLISQEENLTFKSGVNLALGVIEPKIVEKILPFFNEMGLEKLILVYCEFSQKNFKID 117 Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 R+ I++ +QC L I ++ L + + F E + Sbjct: 118 KKRLEKILINSCQQCGRGDLMRIEIYENVDSFLAIYPKVVLVDFEGEKKEFD-------- 169 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235 + +G EGG+ E+ + + L P IL+S +AA+ ++ Sbjct: 170 ----KDTLYFVGAEGGFSESERRRIKDK-----IVLNSPFILKSQSAALGVLS 213 >gi|291276368|ref|YP_003516140.1| putative RNA methyltransferase [Helicobacter mustelae 12198] gi|290963562|emb|CBG39394.1| putative RNA methyltransferase [Helicobacter mustelae 12198] Length = 220 Score = 97.7 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 32/228 (14%) Query: 21 QGKASGDQYHYLAHVLRMKEGDNIL---LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + G+ + +L R K+ + L +GK ++ ++ KS ++ Sbjct: 13 ELCIEGELFVHLYKSRRTKKETPLAFCNLMDGKLHHYV-QVEITKKSALLSLQSSQDYVV 71 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVRTYTISAAE 136 +++ ++ ++ + ++G+ + +Q ++ R+ I++ E Sbjct: 72 LPKKTHLLWAITESKNIEKTLPILNQLGVRKLSLFYANRSQRNEKISLPRLEKILIASCE 131 Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 QC TL + + L + + +I+ C + E ++IGP Sbjct: 132 QCGRSTLMELEILKNTKEALALYP-SAKILHFGGKCFGQGDFEH----------GVMIGP 180 Query: 197 EGGYHSEEKETLHSL------PFVTPLSLGPRILRSDTAA--VAAMAL 236 EGG+ +EE + +LRS++AA +AA+ L Sbjct: 181 EGGFDAEEVRAFLGHEILGIDGGI--------VLRSESAALFIAALGL 220 >gi|76797950|ref|ZP_00780211.1| surface protein [Streptococcus agalactiae 18RS21] gi|76586724|gb|EAO63221.1| surface protein [Streptococcus agalactiae 18RS21] Length = 118 Score = 97.7 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Query: 135 AEQCDILTLPFIYPPT--TLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIP 188 A++ + F+ +I A E E L + L + Sbjct: 4 AQRSRASVIVFLRFVLFEKKADFQAELAGFDKIFIAYEESAKEGELSALAQNLQTVKAGD 63 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + + GPEGG +E + + + LGPRI+R++TA + A++++ Sbjct: 64 KLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVISY 113 >gi|326793992|ref|YP_004311812.1| ribosomal RNA small subunit methyltransferase E [Marinomonas mediterranea MMB-1] gi|326544756|gb|ADZ89976.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas mediterranea MMB-1] Length = 236 Score = 97.7 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 25/238 (10%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70 K + Q +++ VL+ GD + L NG GE + S ++ Sbjct: 8 PEQQQTSDCFKLTDAQLKHISQVLQKNSGDRVRVGLLNGDIGEAV-----FDASGFVNID 62 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMD 125 + + + + N L + MG+ I + + + +++ + Sbjct: 63 RSESLPPAALPLTLVLALPRPNMLKRTLMNVTAMGVKRIYLIHSSKVEKSYWQSPVLKRE 122 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCGSENSLE 179 + + EQ +P + + +++ + ++ N+ Sbjct: 123 NINAILLEGLEQARDTVMPELTFCPRFKPFVEDVLPSLLSKDVLGLIAHPY-----NARA 177 Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + ++ + IGPEGG+ E + + LG RILR +TA ++ + Sbjct: 178 CPIDLGDASSI-LAIGPEGGWSEYEVGKWQEAG-METVHLGERILRVETAVPVLLSRL 233 >gi|307109508|gb|EFN57746.1| hypothetical protein CHLNCDRAFT_143017 [Chlorella variabilis] Length = 158 Score = 97.7 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 8 KRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 R ++ L + ++ + A LR+++GD I L +G L+++ V ++ Sbjct: 10 PRFYIPARLADAAPGAVLRLPAEESRHAAKTLRLRQGDRIELCDGSGFVALAEMGGVDRA 69 Query: 65 IRFKVEYQSRSQTKQSDVQYIFS----PIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + Q+ + +K R D++++K E+G A P++T + Sbjct: 70 GAVAQVLDAAQLVPAVGWQWRVACACGSLKGGRSDWLVEKCAELGAAAFTPLLTHRS 126 >gi|197123490|ref|YP_002135441.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K] gi|196173339|gb|ACG74312.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K] Length = 252 Score = 97.7 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 24/242 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70 L + +G + ++ VLR GD I + G+ GE ++I Sbjct: 8 PGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGE--AEILTATPDEVVIAA 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMD 125 R S V + + + L ++Q + MG+ + + + + + D Sbjct: 66 SPDREPPPPSPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPD 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEK 180 +R + EQ LP + + +++ + +++ +L Sbjct: 126 AIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHPAGAAPLEALAP 185 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQA 239 A A + IGPEGG+ E L F P +LGPR+LR D AAV A+ QA Sbjct: 186 AGARAALA-----IGPEGGWTPYEAAALRDRGFA-PFTLGPRVLRVD-AAVPYAVG--QA 236 Query: 240 IC 241 Sbjct: 237 EL 238 >gi|32398792|emb|CAD98502.1| conserved hypothetical protein [Cryptosporidium parvum] Length = 343 Score = 96.9 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 97/276 (35%), Gaps = 65/276 (23%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILL---FNGKDGEWLSKI------------- 58 + + S Q ++ VL + G + + +GK ++KI Sbjct: 56 DINEDLTVELSSRQSNHCISVLEINIGSKVNVGVKNSGKGTATVTKIMRKETNKDGITKS 115 Query: 59 ---------SYVGKSI-------------------RFKVEYQSRSQTKQ-----SDVQYI 85 +G + ++ + ++ + + Sbjct: 116 ESIINLSSIEEIGNKVNNRSRRSISEINNLNNFQYAVTIKLDTEIHKEEYKHDYPLIDLL 175 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-----YTISAAEQCDI 140 + + + ++Q +V +G+G I V T ++ ++ N +++ EQ Sbjct: 176 IALPRPKVFEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASK 235 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADET-------CGSENSLEKLHAIAHIPNVAIL 193 P +Y + F L+ H F E+ + + ++ +H + + Sbjct: 236 TLCPDVYVYASWTFFLQ---HLRNYFFCKESMIGIVADVLGNSKITEIGLQSHTGPIILA 292 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 IGPEGG+ EE L ++ F +++G RIL+ +TA Sbjct: 293 IGPEGGWTKEELTDLITMGF-KVVNMGDRILKVETA 327 >gi|66475514|ref|XP_627573.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|46229333|gb|EAK90182.1| hypothetical protein with a C-terminus transmembrane domain [Cryptosporidium parvum Iowa II] Length = 336 Score = 96.9 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 97/276 (35%), Gaps = 65/276 (23%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILL---FNGKDGEWLSKI------------- 58 + + S Q ++ VL + G + + +GK ++KI Sbjct: 56 DINEDLTVELSSRQSNHCISVLEINIGSKVNVGVKNSGKGTATVTKIMRKETNKDGITKS 115 Query: 59 ---------SYVGKSI-------------------RFKVEYQSRSQTKQ-----SDVQYI 85 +G + ++ + ++ + + Sbjct: 116 ESIINLSSIEEIGNKVNNRSRRSISEINNLNNFQYAVTIKLDTEIHKEEYKHDYPLIDLL 175 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-----YTISAAEQCDI 140 + + + ++Q +V +G+G I V T ++ ++ N +++ EQ Sbjct: 176 IALPRPKVFEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASK 235 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADET-------CGSENSLEKLHAIAHIPNVAIL 193 P +Y + F L+ H F E+ + + ++ +H + + Sbjct: 236 TLCPDVYVYASWTFFLQ---HLRNYFFCKESMIGIVADVLGNSKITEIGLQSHTGPIILA 292 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 IGPEGG+ EE L ++ F +++G RIL+ +TA Sbjct: 293 IGPEGGWTKEELTDLITMGF-KVVNMGDRILKVETA 327 >gi|153005814|ref|YP_001380139.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. Fw109-5] gi|152029387|gb|ABS27155.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5] Length = 251 Score = 96.5 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 22/237 (9%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEY 71 L + +G + ++ VLR GD I + G+ GE +++ + Sbjct: 9 SELAPDGTARLAGRRAMHVHGVLRASAGDRIQAGVIGGRMGE--AEVLSASEGEVVIAPR 66 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-----YNMDR 126 S V + + + L ++Q MG+ + + + + ++ + Sbjct: 67 LEHPPPPPSPVALLAALPRPKILRRVLQAVASMGVKRLVLLGSYRVEKSYFGTPFLDPAA 126 Query: 127 VRTYTISAAEQCDILTLPFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 +R + EQ LP + + P + L + + +++ + LE L Sbjct: 127 IRAELVLGLEQGRDTVLPEVSVRRFFKPFVEDELDETFPTRARLLAHP---SGSDPLEAL 183 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALV 237 + IGPEGG+ E L + F TP SLGPR+LR D AAV A+ V Sbjct: 184 --APGAERACLAIGPEGGWTPYEAAALCARGF-TPFSLGPRVLRVD-AAVPYAVGQV 236 >gi|95928431|ref|ZP_01311179.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] gi|95135702|gb|EAT17353.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM 684] Length = 237 Score = 96.5 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 10/214 (4%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90 ++ V R GD + + I+ + + S V+ + + + Sbjct: 26 HVDQVHRASVGDRLRVGQLNGQLGTGTITELTDQKLVMKVCCDQPAPSPSCVELVLALPR 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPF 145 L + + +G+ I + + + + + +R+R + + EQC LP Sbjct: 86 PKVLKRTLITATTLGIKRITLINSWRVEKSFWQTPLLVSERIREFLVEGLEQCCDTVLPQ 145 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 + + ++ + + + +E H + IGPEGG+ E Sbjct: 146 VDCYPLFKPYAEDVLPGQLV--GKQGVVAHPHVEAPHTAPVSDRYVLAIGPEGGFIPYEV 203 Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVA-AMALVQ 238 L V PL LG RIL+ + AA+ A+A + Sbjct: 204 NLLLDQGMV-PLVLGSRILKVE-AAMTSAVARLS 235 >gi|320354418|ref|YP_004195757.1| hypothetical protein Despr_2323 [Desulfobulbus propionicus DSM 2032] gi|320122920|gb|ADW18466.1| protein of unknown function DUF558 [Desulfobulbus propionicus DSM 2032] Length = 245 Score = 96.1 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 92/236 (38%), Gaps = 12/236 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 L + + +G + +L VL++ GD + + + ++ + + Sbjct: 8 PAELVVG-EVSLTGRRSEHLRKVLKVVPGDTVRVGVVQGQVGTGRVLAIDGELVRLAVEL 66 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRV 127 + ++ I + + L +++++ +G+ + +R + + D++ Sbjct: 67 THQPVCDLHIELILALPRPIMLQRILKQATVLGVRRFHLIRSRRVEKSFFHSPVLAPDKI 126 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAI 184 RT+ + EQ LP + + +++ ++ + G+ L + Sbjct: 127 RTFLLEGMEQAMDTWLPEVSIHPQFKPFVEDVLPTLNGQGLIAHPDADGTLVGLPV--SG 184 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 + + +GPEGG+ E + F ++G RIL DTA V+ +A +Q + Sbjct: 185 VAGQRLLLAVGPEGGWSDYELQRFLDQGFY-GFTMGSRILHVDTAVVSLLAQLQLL 239 >gi|289676398|ref|ZP_06497288.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae FF5] Length = 60 Score = 95.7 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++A LIGPEGG + E F LGPR+LR++TA V A+++ Q + GD+ Sbjct: 3 KPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVAQQLWGDF 60 >gi|254282363|ref|ZP_04957331.1| RNA methyltransferase, RsmE family [gamma proteobacterium NOR51-B] gi|219678566|gb|EED34915.1| RNA methyltransferase, RsmE family [gamma proteobacterium NOR51-B] Length = 237 Score = 95.7 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 22/234 (9%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + + + ++ ++ VL + G + L +G G I+ + S S Sbjct: 14 GDEVRLTDHRFQHIQRVLGAEVGTSLKVGLVDGNMG--TGTITAIDTGEVLMQVALSESP 71 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYT 131 + + + L +++ E G+G + + + + +++ ++ Sbjct: 72 PPRHPYDIALALPRPKMLRRVLRTVAEFGVGTLHLIHSWRVEKSYWQSPLLQTGNIQRAL 131 Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEKLHAIAHIPN 189 + E+ +P ++ +++ + +D S L A Sbjct: 132 QAGLERSGDTRMPKVHQHRRFRPFIEDI---LPALISDRAGVIVHPGSEPVLAADQTDHK 188 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 ILIGPEGG+ E E V+ SLG RIL DTA + + G Sbjct: 189 ALILIGPEGGFIPFEVELACQQG-VSVRSLGRRILSVDTA-------LNTVLGR 234 >gi|120556330|ref|YP_960681.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei VT8] gi|120326179|gb|ABM20494.1| protein of unknown function DUF558 [Marinobacter aquaeolei VT8] Length = 239 Score = 95.3 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 80/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVE 70 + + + G + +L VL+ G I NG G ++ + ++ + Sbjct: 8 EEDFVAPDRVRLRGRRLDHLKTVLKAGTGHRIPAGRVNGLMG--HGEVLSMTETEAELLV 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 + + I + + ++Q +G+ + + + + + + D Sbjct: 66 TLDQQPPAPLPLTLILAMPRPKMFRRVLQTCASLGVKDLWLINSYKVEKSFWQTPWLTED 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R EQ +P ++ + ++ D ++ + + Sbjct: 126 HLRENLALGLEQAKDTLMPQVHIRKLFKPFVE--DELPTLLGGKRALVAHPGMAAPCPTH 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A+ IGPEGG+ E L + LGPRILR +TA ++ + Sbjct: 184 LNEPAALCIGPEGGFTDYEVGKLEEAG-CQSVHLGPRILRVETAVPVLISRL 234 >gi|281357710|ref|ZP_06244197.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] gi|281315967|gb|EFA99993.1| protein of unknown function DUF558 [Victivallis vadensis ATCC BAA-548] Length = 239 Score = 95.0 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 8/195 (4%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 +++ +G + + S V I + + ++ +V MG+ Sbjct: 45 NGLTGTAELLEIGADAATLRPDLTVPPPEPSPVTLIAALPRPKTFQKVLHAAVTMGVKEF 104 Query: 110 RPVITRYTQNTHYNMDRVR-TYTIS----AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ 164 + ++++ + A EQ +P I + ++ D Sbjct: 105 WFIACWKVDKSYWSSPNLETASLDETCRLALEQAGDTAMPRIEFRNRFKPFVE--DELPG 162 Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 I+ + + + A++IGPEGG+ E + L VTP++LG R L Sbjct: 163 ILAGRPAYAGHPAATEPIPVGSRGPAALVIGPEGGFTGYEIDLLARHG-VTPVTLGRRTL 221 Query: 225 RSDTAAVAAMALVQA 239 R++ A A +A + A Sbjct: 222 RTEVAVPALLATLTA 236 >gi|315452582|ref|YP_004072852.1| Ribosomal RNA small subunit methyltransferase [Helicobacter felis ATCC 49179] gi|315131634|emb|CBY82262.1| Ribosomal RNA small subunit methyltransferase [Helicobacter felis ATCC 49179] Length = 263 Score = 94.6 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 80/214 (37%), Gaps = 17/214 (7%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISY 60 K+ + ++ F P + + G+ Y +L R + L N KD + + Sbjct: 30 KLGARMQ--FSYHPKAGELELIIEGELYRHLYLSRRTSAQTLLALRNLKDNYLYFYQQME 87 Query: 61 VGKS-IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118 + K R + V+ Q QT +++ I ++ ++ +MG+ I Y+Q Sbjct: 88 INKKYARLRCVQSQETPQTPLHQTHLLWAIIALKNVEKVLPYLNQMGVCKISFFYADYSQ 147 Query: 119 NTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175 +++R I +++QC L + E LK + + S Sbjct: 148 KDQRPEHHLERFEKILIQSSQQCGRSDLMVLEFLENTEQALKTYPKAAVMDLH--GTHSS 205 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 L+ L ++IGPEGG+ E+E Sbjct: 206 ACLQDLQQ-------GVMIGPEGGFSQRERELFE 232 >gi|146305552|ref|YP_001186017.1| hypothetical protein Pmen_0515 [Pseudomonas mendocina ymp] gi|145573753|gb|ABP83285.1| protein of unknown function DUF558 [Pseudomonas mendocina ymp] Length = 236 Score = 94.6 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 11/232 (4%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 D + + + SG + +L V R + GD + + ++ + Sbjct: 8 DADFVGEDRVRLSGRRLKHLHEVHRAEAGDRLRVGRLGGLMGEGRLMALDAEHAELQVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 ++ + + + + + L ++Q MG+ + V + + + + + + Sbjct: 68 DQAPPAKLPLTLVLALPRPKMLKRVLQTVSAMGVPRLVLVNSYRVEKSFWQTPFLEAEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + ++E K + + A T G A Sbjct: 128 REQLILGLEQARDTVLPDV----SIEKRFKPFVEDRLPALATGTLGLIGHPGDYPACPRA 183 Query: 188 --PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 184 VEEPVTLAIGPEGGWIPYEVDLLRQAAGLQPVQLGERILRVETAVPALLARL 235 >gi|254785360|ref|YP_003072789.1| 16S ribosomal RNA methyltransferase RsmE [Teredinibacter turnerae T7901] gi|237686961|gb|ACR14225.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 236 Score = 94.2 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 25/230 (10%) Query: 20 TQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 T+ S Q ++ VL+ + G + + +GK G + + Sbjct: 15 TEATLSERQTRHIQQVLKARTGSLLKVGVIDGKLGY--GCLHQTDGGWGLTDIQLETAPP 72 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-------RVRTY 130 + + + + + ++Q + MG+ I + T + + + R + Sbjct: 73 APLPLSLVLALPRPQMIKRILQTAACMGVARIHLLQTAKVEKSFWQSPAVTESAIREQLI 132 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIA 185 EQ LP + ++ D + +++ +A Sbjct: 133 LG--LEQAGATQLPQVEKHCRFRPFAEDALPGIADGHTKLIAHP------GDYPACPRLA 184 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + IGPEGG+ E + F LG RIL+ +TA +A Sbjct: 185 KNETAVLAIGPEGGFTEGEVSYFLNEGFA-AFQLGARILKVETAVPVTLA 233 >gi|317968924|ref|ZP_07970314.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CB0205] Length = 251 Score = 94.2 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 81/237 (34%), Gaps = 14/237 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ ++ +VL+ G+ + L I + S Sbjct: 8 PEDWIDEQRVLLTDERASHVRNVLKSSVGETLRLGLIGGACGQGLIESLDSSGVVLRAVL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT--- 129 K+ + + + L ++++ E G+ + + + + +++ ++ Sbjct: 68 GEPPPKRHPFDLVLALPRPKMLRRILRQCAEFGISHLHVINSARVEKSYWQSPLLQASNV 127 Query: 130 --YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKLHAI 184 ++ E+ P ++ +++ ++ E E + Sbjct: 128 EDALLAGMERSRDTIAPQVHLHQRFRPFIEDELPGLCAGRLCLITEMGAEEPLAQH---- 183 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 ++IGPEGG+ E E + P+ LG R L DTA A +A A+ Sbjct: 184 -AGQPALVMIGPEGGFVPFEIELAQAHG-ARPVHLGERTLSVDTALSATLAQGSAVF 238 >gi|254480005|ref|ZP_05093253.1| conserved hypothetical protein TIGR00046, putative [marine gamma proteobacterium HTCC2148] gi|214039567|gb|EEB80226.1| conserved hypothetical protein TIGR00046, putative [marine gamma proteobacterium HTCC2148] Length = 235 Score = 94.2 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 18/230 (7%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 LF Q + +G + +L V GD + + G + I + K+ Sbjct: 5 LFSAKDRNENGQLQITGARLEHLLAVHGKDSGDTVRVGEINGGIGNATIISIDKNAAVLE 64 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124 + + + + + + L +++ + E G+G + + + + + + Sbjct: 65 PMLDQQAPAKLPLTLVVALPRPKMLRRILRSTAEFGVGELHLINSYRVEKSFWQTPVLQP 124 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 + + Y + EQ LP ++ + +++ G + L Sbjct: 125 EAIEQYLLQGLEQSRDTCLPAVHLHKRFKPFVEDELPVLM-------PGKQALLAHPGDY 177 Query: 185 AHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 P + IGPEGG+ E E L S +SLGPRILR + A Sbjct: 178 PPCPRGVAMPTLLFIGPEGGFIPYEIEKLESAG-CQTVSLGPRILRVENA 226 >gi|294670652|ref|ZP_06735528.1| hypothetical protein NEIELOOT_02375 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307622|gb|EFE48865.1| hypothetical protein NEIELOOT_02375 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 192 Score = 93.8 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 + R F+ L + GD +L +VLR + G+ I+LFNG + + ++ + K Sbjct: 1 MPRFFLSAALHVGETVALPGDVVRHL-NVLRCRIGEGIVLFNGDGLSYHAVLNSLDKRAA 59 Query: 67 FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQK 100 SR + I + R+D+ +QK Sbjct: 60 EAEISSSRPSENESPLHITLIQAVSSGERMDFTLQK 95 >gi|82622375|gb|ABB86775.1| unknown [Theileria lestoquardi] Length = 201 Score = 93.8 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%) Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTI 132 ++ V + + LD ++Q S +G+G I + + + + + + + I Sbjct: 19 EKPVVDLVVGIPRPKSLDKLLQYSASIGVGNIDLICSSKVEKSYWASHKLSKESINKSLI 78 Query: 133 SAAEQCDILTLPFIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 +Q +P + +L E K D+ +++ ++ + SL L+ P Sbjct: 79 LGLQQGVCTLMPEVTLFISLGDYERAFKQKDYAMKLIAHPDSEQTLGSL-NLNTHVKGP- 136 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 + + IGPEGG+ E L FV L RILR++ AAVA ++ + + D Sbjct: 137 ILVAIGPEGGWLDHELAYYKKLGFVQF-KLTDRILRTEVAAVAILSQMSLLLND 189 >gi|227892941|ref|ZP_04010746.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] gi|227865249|gb|EEJ72670.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] Length = 80 Score = 93.8 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128 + + + ++++ IQKS+E+G+ I P+ + + + + + + Sbjct: 2 DRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQ 61 Query: 129 TYTISAAEQCDILTLPFIY 147 I+A EQC +P I Sbjct: 62 KIAIAACEQCGRNRVPEIR 80 >gi|149375845|ref|ZP_01893613.1| hypothetical protein MDG893_04532 [Marinobacter algicola DG893] gi|149359970|gb|EDM48426.1| hypothetical protein MDG893_04532 [Marinobacter algicola DG893] Length = 239 Score = 93.8 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 23/240 (9%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRF 67 LF D +G + +L VL++ EGD + L +G G + Sbjct: 6 LFQD-DFVAADTAVLTGRRLAHLHSVLKVAEGDLVPVGLVDGNIGTGR-VLRLTDTEAAL 63 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--- 124 +VE S+ + I + + ++Q +G+ I + + + + Sbjct: 64 QVELTSQPPAPLP-LTLILAMPRPKMFRRVLQTCATLGVKDIWLINAYKVEKSFWQTPWL 122 Query: 125 --DRVRTYTISAAEQCD-----ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177 D +R + EQ L + ++ P + L + +V T Sbjct: 123 SDDNLRENMVLGLEQARDTQLPRLHVRKLFKPFVEDELPALLRNTHALVAHPGTS----- 177 Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + + +GPEGG+ E + L + LG RILR +TA ++ + Sbjct: 178 --TPCPVHINEPATLCVGPEGGFIPYEIDKLTEAG-CEAVHLGSRILRVETAVPVLVSRL 234 >gi|87122934|ref|ZP_01078798.1| hypothetical protein MED121_19796 [Marinomonas sp. MED121] gi|86161783|gb|EAQ63084.1| hypothetical protein MED121_19796 [Marinomonas sp. MED121] Length = 239 Score = 93.8 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 27/244 (11%) Query: 10 LFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIR 66 + +D I T Q +L V++ + GD + + NG GE Sbjct: 4 ILLDPEQAIDETHFALDSRQSEHLKKVIKAEVGDKLRVGIINGPMGEATYLGVNSDGITE 63 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTN---RLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122 ++ ++ K + + + + N R I MG+ I + + + +++ Sbjct: 64 IEIIQLTQQAPKPLPLTLVLALPRPNMLKRTLLNISA---MGVKKIILLNSAKVEKSYWQ 120 Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 D + + EQ LP + T +++ + E G L Sbjct: 121 SPVLKADNLERILLEGLEQARDTQLPELQMMTRFRPYVED-------LLPREMAGKLALL 173 Query: 179 EKLHAIAHIP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + P + IGPEGG++ E H F + LG RIL+ +TA Sbjct: 174 AHPYQADDCPINLTQESILAIGPEGGWNEFEVSKWHEAGF-KSVHLGERILKVETAVPVL 232 Query: 234 MALV 237 ++ + Sbjct: 233 LSRL 236 >gi|222824414|ref|YP_002575988.1| conserved hypothetical protein (DUF558 domain protein) [Campylobacter lari RM2100] gi|222539635|gb|ACM64736.1| conserved hypothetical protein (DUF558 domain protein) [Campylobacter lari RM2100] Length = 220 Score = 93.4 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 23/225 (10%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE---WLSKISYVGKSIRF 67 F+ P + + +L R+K GD I+L N KD + I +S Sbjct: 3 FLYHPQSGALNLELENEALLHL-KARRVKVGDKIILKNLKDFFAYTYEC-IELSRRSCVL 60 Query: 68 -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD- 125 ++ + Q ++ + + I ++ + E+G+ + V Y+Q ++ +D Sbjct: 61 NLLDKKEEKQEIKTHLHLALAVIDPKIIEKTLPFLNELGVAKLSFVYMDYSQK-NFKLDF 119 Query: 126 -RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 R+ I +++QC +L + + + +++ I F E L + Sbjct: 120 KRMEKILIESSQQCSRASLMELESFGDFKKFQQVYENIVLIDFEGE---------DLMSF 170 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +V LIG EGG+ +E+E + IL++ TA Sbjct: 171 EPSKHV-FLIGAEGGFSQKEREESVKKAKLQA----DFILKAQTA 210 >gi|149917598|ref|ZP_01906095.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1] gi|149821661|gb|EDM81059.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1] Length = 243 Score = 92.7 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 78/215 (36%), Gaps = 14/215 (6%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87 ++ GD + + +++ + + S S V + Sbjct: 29 KHIK----AAVGDALGVGLLGGKMGRARVVRIDREALELELEAALSEPPPPPSAVTLAVA 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILT 142 + L+ ++Q+ +G+ +R + ++++ +R + EQ Sbjct: 85 LPRPATLEKVLQQGTVLGIKRFLLFHSRRVEKSYWDASALEPAALRRQLLLGLEQTRDTI 144 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP + ++ + + A + + +++GPEGG+ Sbjct: 145 LPELEFHRRFRPFAEDRLASLRAAAPVLVADPHGPRPCPRA--QVGPLTLVLGPEGGFVE 202 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E+E +L + LGPRI+R +TAAVA +A + Sbjct: 203 FERERFAALGDAL-VHLGPRIMRVETAAVALLARL 236 >gi|315186740|gb|EFU20498.1| protein of unknown function DUF558 [Spirochaeta thermophila DSM 6578] Length = 235 Score = 91.9 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 19/222 (8%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS-- 87 +L VLR++EG+ + + ++ V + +R + + + Sbjct: 24 HLVSVLRVREGEVVRVGVLGGRMGEGRVEEVAREEVRLSCTFDRDPPPPLPVTLLVAAVR 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILT 142 PI RL + +G+ + R ++ + + I AEQ Sbjct: 84 PIVGRRLLRDLSA---LGLERVVVFPARLSERSYLESTLWKEGGWERSLIEGAEQGVTTR 140 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P + +LE ++ + V + E + + +GPE G+ Sbjct: 141 VPEVVRVRSLEEGVRMCGDGVRYVCDEAAGQGEGVVR-------GARYVVAVGPERGWTD 193 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EE+ L FV LSLGPR+LR++ A A+ V G W Sbjct: 194 EERRVLEREGFVR-LSLGPRMLRTEVACHVALGRVAEGAGWW 234 >gi|322378683|ref|ZP_08053116.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1] gi|321148900|gb|EFX43367.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1] Length = 222 Score = 91.9 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 22/218 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDG-EWLSKISYVGKS 64 ++ F+ + + Y ++ RM IL+F N D + K V K Sbjct: 1 MQ--FIYHKEAGSQELLLTAQSYRHVYLSRRMHA-QEILVFRNLADHILYFYKPLEVKKH 57 Query: 65 -IRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 R + Q R + I++ I + ++ ++ +MG+G I ++Q Sbjct: 58 HARLSLLGQELRPICPKRPSHLIWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEK 117 Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R I++ EQC T + + L+ + F D+T G Sbjct: 118 IDAPKLERFRRILIASCEQCGRSTCMELEVLENTKMALERYPTAYIFDFHDQTQG----- 172 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP 216 L ++ + I IGPEGG+ S+E++ +P Sbjct: 173 --LVSLENG----IFIGPEGGFCSQERQLFKDREIYSP 204 >gi|297794975|ref|XP_002865372.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp. lyrata] gi|297311207|gb|EFH41631.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp. lyrata] Length = 139 Score = 91.9 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILTLPFIY 147 +K R D++I+K E+G ++ P++T + + +DR+ + + A QC L + Sbjct: 7 LKGGRADWLIEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAVATQCQRLHQIVLN 66 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG--------- 198 PP LL + + + A T + L +++ A + +++G EG Sbjct: 67 PPIKFVTLLDHIFKSKLCLVA--TAEATPLLNAVNSSAKESSGLLIVGSEGVCYNLTVNY 124 Query: 199 ----GYHSEEKETLH 209 + +E E + Sbjct: 125 EIEANFTKKEVEMML 139 >gi|294651883|ref|ZP_06729173.1| RsmE family RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292822206|gb|EFF81119.1| RsmE family RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 236 Score = 91.5 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 12/221 (5%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 Q +L L++ GD + + + +L+++ YV + + + ++ V I + Sbjct: 24 QLKHLQQHLQLSVGDTLKIGVRNEQRYLTEVLYVSEQRIIVKPIRVEAIPEKLPVHLILA 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L M+ +V +G+ I + + +++ + ++ Y EQ P Sbjct: 84 LPRPKVLRRMVMDAVTLGVERISLIHSYRVDKSYWQTPFLQQLDDYVTLGLEQAGDPIAP 143 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 I + +++ C I + E + A ++++GPEGG+ E Sbjct: 144 EIQLYKRFKPFVEDILP-CFITTEAAAYVAHPYAEAVMPHAIQHRCSVIVGPEGGFIPYE 202 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 E + + LG RILR++TA V I G + Sbjct: 203 IELMQKNG-CQAVCLGNRILRTETA-------VAHILGRLF 235 >gi|262377206|ref|ZP_06070431.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262307944|gb|EEY89082.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 237 Score = 91.5 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 84/218 (38%), Gaps = 12/218 (5%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90 +L L+++ GD + + + +L++I + + Q + ++ V I + + Sbjct: 26 HLQQHLQIQVGDTLKVGIREGQRYLTEIVEISEKAVRLKPLQQETVPEKLPVTLIVALPR 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIY 147 L +I SV +G+ I + + +++ + ++ Y EQ P I Sbjct: 86 PKVLRRLIMDSVTLGVEKIILLHSYRVDKSYWQTPFLQQLNHYIELGLEQAGDTVAPKIE 145 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 + +++ + E+ A I+IGPEGG+ E + Sbjct: 146 LYKRFKPFVEDILPGLIGTDCP-AYVAHPYAEQAMPFAIDHPCTIVIGPEGGFIPYEVDL 204 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 L +SLG RI+R++T ++ + G + Sbjct: 205 LIKNG-CQAVSLGNRIIRTET-------VIPYVLGRLF 234 >gi|42528220|ref|NP_973318.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC 35405] gi|41819490|gb|AAS13237.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC 35405] Length = 278 Score = 91.5 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 33/240 (13%) Query: 31 YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFK---------------VEYQS 73 ++ +L +KEGD + NGK GE ++IS++ + + Sbjct: 45 HIKKILNLKEGDVFKAGIINGKIGE--AQISHLSEEKIVFSFCPNPPDKGIADNGADKVE 102 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVR 128 ++ I + +L +++ + +G I T + ++ + ++ Sbjct: 103 TRPLPLPPIKIILGFPRPIQLRRILRDAASLGFAEIVLCGTDLGERSYLKSNLSSPEEIK 162 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSENSLEKLHAI 184 Y + Q LP +++ LK+ +++ G SL + Sbjct: 163 KYLLDGISQAGQTMLPAFSFCNSVKEALKDLKAASFKGSKVLL---DIGDFPSLSTFR-M 218 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 +V I IG E G+ E++ S F+ P S+G RILR++TA +A++++ A G W Sbjct: 219 TKGESVLITIGSERGWTQNERDVFFSEGFI-PYSMGKRILRTETALTSALSVLLANNGFW 277 >gi|322380178|ref|ZP_08054413.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5] gi|321147393|gb|EFX42058.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5] Length = 222 Score = 91.5 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 22/218 (10%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDG-EWLSKISYVGKS 64 ++ F+ + + Y ++ RM IL+F N D + K V K Sbjct: 1 MQ--FIYHKEAGSQELLLTAQSYRHVYLSRRMHA-QEILVFRNLADHILYFYKPLEVKKH 57 Query: 65 -IRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122 R + Q R + I++ I + ++ ++ +MG+G I ++Q Sbjct: 58 HARLSLLGQELRPICPKRPSHLIWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEK 117 Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178 ++R R I++ EQC T + + L+ + F D+T G Sbjct: 118 IDAPKLERFRRILIASCEQCGRSTCMELEVLENTKMALERYPTAYIFDFHDQTQG----- 172 Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP 216 L ++ + I IGPEGG+ ++E++ +P Sbjct: 173 --LVSLENG----IFIGPEGGFCNQERQLFKDREIYSP 204 >gi|226953409|ref|ZP_03823873.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] gi|226835840|gb|EEH68223.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] Length = 236 Score = 91.1 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 12/221 (5%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 Q +L L++ GD + + + +L+++ YV + + + ++ V I + Sbjct: 24 QLKHLQQHLQLSVGDTLKIGVRNEQRYLTEVLYVSEQRIIVKPIRVEAIPEKLPVHLILA 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L M+ +V +G+ I + + +++ + ++ Y EQ P Sbjct: 84 LPRPKVLRRMVMDAVTLGVERISLIHSYRVDKSYWQTPFLQQLDDYVTLGLEQAGDPIAP 143 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 I + +++ C I + E + A ++++GPEGG+ E Sbjct: 144 EIQLYKRFKPFVEDILP-CFITTEAAAYVAHPYAEAVMPYAIQHRCSVIVGPEGGFIPYE 202 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 E + + LG RILR++TA V I G + Sbjct: 203 IELMQKNG-CQAVCLGNRILRTETA-------VAHILGRLF 235 >gi|299768415|ref|YP_003730441.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter sp. DR1] gi|298698503|gb|ADI89068.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter sp. DR1] Length = 235 Score = 91.1 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 81/210 (38%), Gaps = 14/210 (6%) Query: 40 EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ 99 G N+ + + ++I + + + + V I + + L +I Sbjct: 35 VGQNLKVGVRNGARYTTEIISINEQEVCIRPISEETVPAKLPVHLIVALPRPKVLRRLIM 94 Query: 100 KSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 SV +G+ I + + +++ + ++ Y EQ +P I+ + + Sbjct: 95 DSVTLGVERISLIHSYRVDKSYWQTPFLQQLDNYVTLGLEQAGDTIVPEIHMYKRFKLFV 154 Query: 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVT 215 ++ N ++ + + + +IP+ I++GPEGG+ E + L Sbjct: 155 EDVLPN--LISKETPAYVAHPYAEQSMPVNIPHACSIVVGPEGGFIPYEVDLLTKNG-CQ 211 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDWY 245 +SLG RILR++T + I G + Sbjct: 212 AVSLGNRILRTET-------SISYILGRLF 234 >gi|325474581|gb|EGC77767.1| hypothetical protein HMPREF9353_00614 [Treponema denticola F0402] Length = 287 Score = 90.3 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 42/249 (16%) Query: 31 YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRF--------------------- 67 ++ +L +KEGD + NGK GE L IS++ + Sbjct: 45 HIKKILNLKEGDVFKAGIINGKIGEAL--ISHLSEEKIVFSFCPNPPDKNIADKGADKNK 102 Query: 68 ---KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN- 123 + ++ I + +L +++ + +G I T + ++ Sbjct: 103 DRKDAYEVEKIPLPLPPIKIILGFPRPIQLRRILRDAASLGFAEIVLCGTELGERSYLKS 162 Query: 124 ----MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSE 175 + ++ Y + Q LP ++++ LK+ +++ G Sbjct: 163 NLSSPEEIKKYLLDGISQAGQTLLPAFSFCSSVKEALKDLKAASFKGSKMLL---DIGDF 219 Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 SL I +V I IG E G+ E+E S F++ S+G RILR++TA +A++ Sbjct: 220 PSLSTFRMIK-GESVLIAIGSERGWTQNEREAFFSEGFISY-SMGKRILRTETALTSALS 277 Query: 236 LVQAICGDW 244 ++ A G W Sbjct: 278 VLLANNGFW 286 >gi|86159414|ref|YP_466199.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter dehalogenans 2CP-C] gi|85775925|gb|ABC82762.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans 2CP-C] Length = 249 Score = 90.3 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 24/242 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70 L + +G + ++ VLR GD I + G+ GE ++I Sbjct: 4 PGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVVGGRMGE--AEILSAAPDEVVIAA 61 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMD 125 R + V + + + L ++Q + MG+ + + + + + + Sbjct: 62 RLDREPPPPAPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPE 121 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEK 180 +R + EQ LP + + +++ + +++ +L Sbjct: 122 ALREQFLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHPAGAAPLEALAP 181 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQA 239 A A + IGPEGG+ E L F ++LGPR+LR D AAV A+ QA Sbjct: 182 AGARAALA-----IGPEGGWTPYEAAALRDRGFA-AITLGPRVLRVD-AAVPYAVG--QA 232 Query: 240 IC 241 Sbjct: 233 EL 234 >gi|93006553|ref|YP_580990.1| hypothetical protein Pcryo_1729 [Psychrobacter cryohalolentis K5] gi|92394231|gb|ABE75506.1| protein of unknown function DUF558 [Psychrobacter cryohalolentis K5] Length = 247 Score = 90.0 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 22/228 (9%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ VL K GD + + + + I+ + + I + + D+ + + Sbjct: 26 HVNQVLGAKVGDTLKIGQLEGNLGTAIIADITPERIDLCEISFVTAPPPKLDLTVVLALP 85 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFI 146 + L +I +G+ I + + TQ +++ + R+ + + +Q P I Sbjct: 86 RPKVLRRLIMDMTALGVRDIILINSYRTQKSYWQSPMLSRLDEFVLEGLQQGIDTVAPRI 145 Query: 147 YPPTTL----EFLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIPNVAI----LIGP 196 E L N N IV E SE ++L + + IG Sbjct: 146 SLQKRFKPFVEDELANLITNRAIVAHPYAELSFSEYVQQQLESSESPQKSILPSMVFIGA 205 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG+ E E L + +G RILR++ A V AI G W Sbjct: 206 EGGWIDYEVELLAKQG-CQAVHIGARILRTE-------AAVNAILGQW 245 >gi|148239333|ref|YP_001224720.1| hypothetical protein SynWH7803_0997 [Synechococcus sp. WH 7803] gi|147847872|emb|CAK23423.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 236 Score = 89.6 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 20/227 (8%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 + + S + ++ VLR ++GD + L +I + + Sbjct: 16 QRVRLSDRRAEHIRKVLRSQQGDTLRLGMLGGQLGTGRIEAIDAQAVLITVQLVDPPPAR 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------TYTIS 133 + + + L +++ E G+G++ V T ++ + Sbjct: 76 HRFDLVLALPRPKMLRRILRAVAEFGVGSLHLVQTARVDKSY-----WQSPLLADAKVDE 130 Query: 134 A----AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIP 188 A E+ +P ++ +++ CQ +++ L A+A P Sbjct: 131 ALRMGLERSRDTIIPQVHRHRLFRPFIEDRLPAICQGRPCW--IAHQDADVGLSAVAGQP 188 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 V ++IGPEGG+ E + + LG RIL DTA +A Sbjct: 189 AV-VMIGPEGGFVPFELTLAEQMG-AQKVHLGGRILSVDTAVATVLA 233 >gi|319403716|emb|CBI77301.1| hypothetical protein BARRO_10234 [Bartonella rochalimae ATCC BAA-1498] Length = 97 Score = 89.2 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 47/74 (63%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + LKRLFV L + + G Q YL HVLRMKEG ILLFNG+DGEWL+K+ + Sbjct: 1 MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGQDGEWLAKLLF 60 Query: 61 VGKSIRFKVEYQSR 74 + K + + V Y R Sbjct: 61 IKKKLWWLVLYVKR 74 >gi|319406724|emb|CBI80357.1| hypothetical protein B11C_100024 [Bartonella sp. 1-1C] Length = 97 Score = 89.2 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 37/74 (50%), Positives = 47/74 (63%) Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60 M+ + LKRLFV L + + G Q YL HVLRMKEG ILLFNGKDGEWL+K+ + Sbjct: 1 MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGKDGEWLAKLLF 60 Query: 61 VGKSIRFKVEYQSR 74 + K + + V Y R Sbjct: 61 IKKKLWWLVLYVKR 74 >gi|332978333|gb|EGK15059.1| RsmE family RNA methyltransferase [Psychrobacter sp. 1501(2011)] Length = 237 Score = 89.2 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 20/235 (8%) Query: 19 KTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ 76 +T + Q ++ VL ++ GD + + + K + I V + ++ Sbjct: 13 QTCLTLTEVSQIKHVQQVLELETGDRLKVGSFKGNLGSAVIEAVSDTQLKLTDITLDILP 72 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTIS 133 + D+ I + + L +I +G+ I V + T +++ + R+ + Sbjct: 73 PSKLDLTVILALPRPKVLRRLIMDMTAIGVREIILVNSYRTDKSYWQSPMLARIDEFVRE 132 Query: 134 AAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 +Q P I E L W + +V A S S + +P Sbjct: 133 GLQQGVDTIPPVIQLKKRFKPFVEDELSQWATSHTMVVAH--PYSTLSFNQFIEQTGLPQ 190 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 V + IG EGG+ E L +++G RILR++ A V A+CG + Sbjct: 191 V-LCIGAEGGWIEYEVGLLQDHG-CQAVTIGQRILRTE-------AAVNALCGRY 236 >gi|312149666|gb|ADQ29737.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 238 Score = 89.2 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 16/229 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + ++ +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHIVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G I T T+ + + + Sbjct: 69 SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q I LP I L+ LK F + +NS + L I I N Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 AI++GPE G+ +EK+ + F +P S+ LR++TA +AA +++ A Sbjct: 186 AIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232 >gi|260891163|ref|ZP_05902426.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254] gi|260859190|gb|EEX73690.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254] Length = 90 Score = 89.2 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL 217 ++ +I+FA E G SL ++ ++ +IGPEGG EE + L + + + Sbjct: 8 DYSKYDKIIFAYENSGESKSLSEIIE-KGDKDILYIIGPEGGITQEEVDFLKNNKAME-I 65 Query: 218 SLGPRILRSDTAAVAAMALV 237 SLG RILR++TAA+ ++ Sbjct: 66 SLGKRILRAETAAIVVCGII 85 >gi|218249710|ref|YP_002374593.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] gi|226322026|ref|ZP_03797551.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|218164898|gb|ACK74959.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi ZS7] gi|226232616|gb|EEH31370.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] Length = 238 Score = 88.8 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 20/231 (8%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + K K+ S Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHCIYKKDKKLFFKKIFKIGES 69 Query: 76 QT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVR 128 K + + PI R +I++ +G I T T+ + + Sbjct: 70 NKLKKLYVLIGMIRPIVAKR---IIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCE 126 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + I+ A Q I LP I L+ LK F + +NS + L I I Sbjct: 127 KHLIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQIN 183 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 N AI++GPE G+ +EK+ + F +P S+ LR++TA +AA +++ A Sbjct: 184 NAAIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232 >gi|195941801|ref|ZP_03087183.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a] gi|216264321|ref|ZP_03436313.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221217508|ref|ZP_03588979.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223889140|ref|ZP_03623729.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224533029|ref|ZP_03673635.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|225549337|ref|ZP_03770310.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225549765|ref|ZP_03770730.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|226320766|ref|ZP_03796322.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|215980794|gb|EEC21601.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi 156a] gi|221192786|gb|EEE19002.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|223885389|gb|EEF56490.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|224512023|gb|EEF82418.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|225369725|gb|EEG99173.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370195|gb|EEG99635.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|226233821|gb|EEH32546.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|312148337|gb|ADQ30996.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 238 Score = 88.8 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 16/229 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G I T T+ + + + Sbjct: 69 SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q I LP I L+ LK F + +NS + L I I N Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 AI++GPE G+ +EK+ + F +P S+ LR++TA +AA +++ A Sbjct: 186 AIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232 >gi|51598323|ref|YP_072511.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi] gi|51572894|gb|AAU06919.1| hypothetical protein BG0061 [Borrelia garinii PBi] Length = 238 Score = 88.8 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 15/217 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GERNIYHC-IYKKDKKLFFKKIFKIEE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G+ I T TQ + + + Sbjct: 69 SNKLKKLNVLIGMIRPLVARRIIKELASIGIYEIIFFNTELTQKSYLNSKIFKNNDYEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q LP I L+ LK + F + ++S +KL I I N Sbjct: 129 LIAGAMQGGTTYLPKIKIMKNLKESLKYIEQE---NFEIKILLEKDSKKKLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 I++GPE G+ +EK+ + F +P S+ ILR++ Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SPCSISSNILRTE 221 >gi|260891162|ref|ZP_05902425.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254] gi|260859189|gb|EEX73689.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254] Length = 126 Score = 88.8 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDV 82 +++ +V R+ GD + + +G+ E+ +KI + K + K+ E + S + ++ Sbjct: 21 DKSDCNHIQNVYRLNIGDELRIIDGE-YEYFTKIIEISKKEVAVKISEKKEDSYSLNVNI 79 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120 +K ++++ IQK E+G+ +I P+ T Sbjct: 80 DVAMGILKNDKMNLAIQKLTEIGVNSIIPLKTERVVVK 117 >gi|88705941|ref|ZP_01103649.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88699655|gb|EAQ96766.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 244 Score = 88.8 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 8/221 (3%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73 L + + G + +L VL+++ GDN+ + + +G+ + Sbjct: 9 EELGANNELELRGRRLLHLNTVLKVQAGDNVRVGQLNGSIGTGTVRSIGEDLAVIDVSLD 68 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---- 129 + + + + + L +++ E G+ I + + + +++ ++ Sbjct: 69 QPAPAPLALTVVMALPRPKMLRRILRGMAETGIKEIHLINSFRVEKSYWQSPLLQAPALR 128 Query: 130 -YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 +S EQ +P ++ ++ D G + E A P Sbjct: 129 EALLSGLEQAMDTVMPTVHLHRRFRPFAEDSLPAL-CDGCDALLGDLGAAEDYPASPSSP 187 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 ++ L GPEGG+ E+E + + P+SLGPR+LR +TA Sbjct: 188 SLLAL-GPEGGFIPFEQELIINAG-ARPVSLGPRMLRLETA 226 >gi|84997543|ref|XP_953493.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304489|emb|CAI76868.1| hypothetical protein, conserved [Theileria annulata] Length = 236 Score = 88.4 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 34/229 (14%) Query: 23 KASGDQYHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTK-- 78 + ++L +VL++ G + + ++ + + K SI+ K+ + Sbjct: 22 IIDKNTINHLLNVLKVHVGKLLRVGILNSTLDY-GVVESITKWSIKLKLSENFKLYPPVI 80 Query: 79 -QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137 + V + + LD ++Q + + + I +Q Sbjct: 81 EKPVVDLVVGIPRPKSLDKLLQ----------------------LSKESINKSLILGLQQ 118 Query: 138 CDILTLPFIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 +P + +L E K D+ +++ ++ + SL L+ P + + I Sbjct: 119 GVCTLMPEVTMFISLGDYERACKQKDYAMKLIAHPDSEQTLGSL-NLNTHVKGP-ILVAI 176 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG+ E L FV L RILR++ AAVA ++ + + D Sbjct: 177 GPEGGWLDHELAYYKKLGFVQF-KLTDRILRTEVAAVAILSQMSLLLND 224 >gi|33865512|ref|NP_897071.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH 8102] gi|33632681|emb|CAE07493.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 237 Score = 88.4 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 85/224 (37%), Gaps = 12/224 (5%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 T + + +L VLR G++I + +++ + + + Sbjct: 16 TTVHITDHRADHLRQVLRSAVGESIRIGVVGGKRGDARVEASDATGVTLRVALNEPPPPR 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISA 134 + + + L +++ E G+ + + + + + + ++V ++ Sbjct: 76 HRFDIVLALPRPKMLRRILRTVAEYGVCNLHLINSARVEKSFWQTPLLTANKVEEALMAG 135 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHIPNVAI 192 E+ P ++ +++ + A C S L A +P V + Sbjct: 136 MERARDTVAPVVHQHRLFRPFVED---QLSTICAGRPCWLAEMGSALALSATPAVPAV-V 191 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 +IGPEGG+ E E ++ P+ LG R+L DTA AA+AL Sbjct: 192 MIGPEGGFVPFELELAQAV-IAQPVHLGTRVLSVDTALTAALAL 234 >gi|294055360|ref|YP_003549018.1| protein of unknown function DUF558 [Coraliomargarita akajimensis DSM 45221] gi|293614693|gb|ADE54848.1| protein of unknown function DUF558 [Coraliomargarita akajimensis DSM 45221] Length = 248 Score = 88.4 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 15/218 (6%) Query: 20 TQGKASGDQ--YHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 Q +GD +L VLR++ G + + F G + +++ +G +++ +R Sbjct: 11 EQMTLAGDDPRAEHLRKVLRVRVGALVFVGFIGAER-ARAEVVSLGDDGSIELKIIAREP 69 Query: 77 TK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTY 130 + + + + ++ ++ +G+ + + + + + R Sbjct: 70 APTPLPIDLLIGLPRPHTAKRILFEAASLGVNRLMFFEAERGEPSYARSRLWQTNEWRER 129 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 AEQ +P + L+ L + ++ + + E A + Sbjct: 130 LRLGAEQSFGTHVPDVLMLPDLQTALNELYSAPLRVALDNYEAQGALTGELARA---EDS 186 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 A+ +GPE G+ S E++ L + T LGP ++R++ Sbjct: 187 AALALGPERGWSSNERDALRKNGW-TLAHLGPHVMRAE 223 >gi|145628642|ref|ZP_01784442.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae 22.1-21] gi|144979112|gb|EDJ88798.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae 22.1-21] Length = 106 Score = 88.0 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLD 95 M EG+ + LF+G + + +KI K ++ ++ + + + + + R++ Sbjct: 1 MTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVISRGERME 60 Query: 96 YMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT 129 + IQKSVE+G+ I P+ + + +R+ Sbjct: 61 FTIQKSVELGVNVITPLWSERC-GVKLDAERMDK 93 >gi|311696090|gb|ADP98963.1| ribosomal RNA small subunit methyltransferase E [marine bacterium HP15] Length = 239 Score = 88.0 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 79/230 (34%), Gaps = 8/230 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 D + G + +L V+++ GD + + ++ + + Sbjct: 8 DEDFVATDRAVLRGRRLAHLQSVIKVVAGDTVPVGRADGQLGTGEVIRLTDNEAELRVTL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 ++ + I + + ++Q +G+ + + + + + + +++ Sbjct: 68 NQDPPLPLPLTLILAMPRPKMFRRILQTCAALGVKDLWLINSYKVEKSFWQTPWLSDEQL 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R EQ +P ++ + ++ D ++ + + Sbjct: 128 RENLTLGLEQAKDTLMPQVHIRKLFKPFVE--DELPALLADKRALVAHPGTSTPCPVHLN 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + IGPEGG+ + E L + LGPRILR +TA ++ + Sbjct: 186 QPTVLCIGPEGGFTAYEVGKLEEAG-CQSVHLGPRILRVETAVPVLVSRL 234 >gi|224534937|ref|ZP_03675506.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224513877|gb|EEF84202.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 238 Score = 88.0 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 11/215 (5%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 KT + + +L +L++K+ D G+ + I K + FK ++ Sbjct: 12 KTGISLNDARAEHLVKILKLKDNDKFKFAILGEKNIYHC-IYKKDKKLFFKKIFKIEESN 70 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTI 132 K ++ + + +I++ +G+ I T T+ + + + I Sbjct: 71 KPKNLSVLIGITRPIVAKRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNNYEKHLI 130 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 + A Q I LP I L+ LK F + +NS + L I N I Sbjct: 131 AGAMQGGITYLPKIKIMKNLQDSLKYIKQE---NFEIKILLEKNSKKNLINIEQANNATI 187 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 ++G E G+ +EK+ + F +P S+ ILR++ Sbjct: 188 IVGSERGFTEKEKQLIMQYNF-SPCSISSNILRTE 221 >gi|254515178|ref|ZP_05127239.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219677421|gb|EED33786.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 239 Score = 88.0 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 16/224 (7%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 L Q + G + ++ +L+++ GD + + + + + K + + Sbjct: 10 ELDSDQQLRLIGRRLRHVNEILKLQAGDQLRVGQLGGQIGVGLVRTIDKQVAVIDVSLEQ 69 Query: 75 SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT-IS 133 + + + + L +++ E G+ I + + + +++ ++ Sbjct: 70 EPPTPLPLSVVLALPRPKMLRRILRGLAETGVKDIHLINSFRVEKSYWQSPLLQNTALHE 129 Query: 134 AA----EQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 A EQ LP ++ E +L + AD G+E+S + Sbjct: 130 ALLAGLEQAMDTVLPAVHLHRRFRPFAEDVLPGLCRGRDALLAD--LGAEDSYP---SEP 184 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 PN+ +L GPEGG+ E++ + + LGPR+LR +TA Sbjct: 185 RGPNLLLL-GPEGGFIPFERDLMRQAG-ARAVGLGPRMLRVETA 226 >gi|71066103|ref|YP_264830.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter arcticus 273-4] gi|71039088|gb|AAZ19396.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 247 Score = 88.0 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 22/228 (9%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ VL K GD + + + + I+ + + I + + + ++ + + Sbjct: 26 HINQVLGAKVGDTLRIGQLEGNLGNAIIADIAPERILLDEVNLTTAPPPKLNLTLVLALP 85 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFI 146 + L +I +G+ I + + TQ +++ + R+ + + +Q P I Sbjct: 86 RPKVLRRLIMDMTALGVRDIILINSYRTQKSYWQSPMLSRLDEFVLEGLQQGVDTVAPRI 145 Query: 147 YPPTTL----EFLLKNWDHNCQIVFADETCG--SENSLEKLHAIAHIPNVAI----LIGP 196 E L N IV S+ ++L + + IG Sbjct: 146 SLQKRFKPFVEDKLAQLITNRAIVAHPYGALSFSQYIQQQLESSESSHRSLLPSMVFIGA 205 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 EGG+ E E L + + +G RILR++ + V AI G W Sbjct: 206 EGGWIDYEIELLTTQG-CQTVHIGARILRTE-------SAVNAILGQW 245 >gi|224533961|ref|ZP_03674546.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|224512964|gb|EEF83330.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] Length = 238 Score = 88.0 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 16/229 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G I T T+ + + + Sbjct: 69 SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q I LP I L+ LK F + +NS + L I I N Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I++GPE G+ +EK+ + F +P S+ LR++TA +AA +++ A Sbjct: 186 VIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232 >gi|126664752|ref|ZP_01735736.1| hypothetical protein MELB17_02900 [Marinobacter sp. ELB17] gi|126631078|gb|EBA01692.1| hypothetical protein MELB17_02900 [Marinobacter sp. ELB17] Length = 239 Score = 87.6 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 82/231 (35%), Gaps = 12/231 (5%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEY 71 + S + +L + ++ GD++ + NG G + +++ + Sbjct: 9 ADFISTDTVRLSDRRLEHLRSIRKIAVGDSVPVGQVNGNMG--VGRVTNLTAHYAELHVS 66 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-- 129 ++ K + + + + +Q +G+ + + + + + + ++ Sbjct: 67 LDQAPPKPLPLTLMLAMPRPKMFRRTLQTCATLGVKELWLINSYKVEKSFWQTPWLQEPA 126 Query: 130 ---YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + EQ +P ++ + ++ D ++ + + + + Sbjct: 127 LHDNLVLGLEQARDTLMPKVHIRKLFKPFVE--DELPALLAGKQALVAHPGSAQPCPVHL 184 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A+ IGPEGG+ E L + LG RILR +TA ++ + Sbjct: 185 PGPAALCIGPEGGFTDYEVNKLQQAG-CQAVHLGQRILRVETAVPVLVSRL 234 >gi|325123842|gb|ADY83365.1| hypothetical protein BDGL_002779 [Acinetobacter calcoaceticus PHEA-2] Length = 235 Score = 87.6 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 14/210 (6%) Query: 40 EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ 99 G N+ + + ++I + + + V I + + L +I Sbjct: 35 VGQNLKVGVRNGARYTTEIVSMNEQEVCIRPITEEVVPAKLPVHLIVALPRPKVLRRLIM 94 Query: 100 KSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 SV +G+ I + + +++ + ++ Y EQ P I + + Sbjct: 95 DSVTLGVERISLIHSYRVDKSYWQTPFLQQLDNYVTLGLEQAGDTIAPEIQLYKRFKPFV 154 Query: 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVT 215 ++ N ++ + + + +IP+ +++GPEGG+ E + L Sbjct: 155 EDVLPN--LISKESPAYVAHPYAEQSMPVNIPHACSVVVGPEGGFIPYEIDLLTKNG-CQ 211 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDWY 245 +SLG RILR++T + I G + Sbjct: 212 AVSLGNRILRTET-------SISYILGRLF 234 >gi|270588150|ref|ZP_06221433.1| Hypothetical UPF0088 protein [Haemophilus influenzae HK1212] gi|270318468|gb|EFA29571.1| Hypothetical UPF0088 protein [Haemophilus influenzae HK1212] Length = 92 Score = 87.6 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64 + R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K Sbjct: 2 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61 Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRL 94 ++ ++ + + + + + R+ Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERM 92 >gi|262280472|ref|ZP_06058256.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258250|gb|EEY76984.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 236 Score = 87.6 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 22/204 (10%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSINEQEVCLRPISEEAVPAKIPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKN-----WDH 161 + + +++ ++ EQ +P I + +++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQMYKRFKPFVEDVLPTFISE 164 Query: 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 C A + HA + +++GPEGG+ E + L +SLG Sbjct: 165 ECPAYVAHPYAEQSMPINIDHACS------VVVGPEGGFIPYEVDLLTKNG-CQAVSLGN 217 Query: 222 RILRSDTAAVAAMALVQAICGDWY 245 RILR++T + I G + Sbjct: 218 RILRTET-------SISYILGRLF 234 >gi|15594408|ref|NP_212196.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31] gi|3915343|sp|O51089|RSME1_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 1; AltName: Full=16S rRNA m3U1498 methyltransferase 1 gi|2687948|gb|AAC66455.1| predicted coding region BB0062 [Borrelia burgdorferi B31] Length = 238 Score = 87.3 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 16/229 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G I T T+ + + + Sbjct: 69 SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q I LP I L+ LK F + +NS + L I I N Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKESLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 I++GPE G+ +EK+ + F +P S+ LR++TA +AA +++ A Sbjct: 186 VIIVGPERGFTEKEKQLIAQYNF-SPYSISTNTLRTETATIAA-SIITA 232 >gi|119478494|ref|ZP_01618456.1| hypothetical protein GP2143_11434 [marine gamma proteobacterium HTCC2143] gi|119448475|gb|EAW29723.1| hypothetical protein GP2143_11434 [marine gamma proteobacterium HTCC2143] Length = 236 Score = 87.3 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 83/231 (35%), Gaps = 9/231 (3%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69 L D T S D+Y ++ ++ + K GD++ + I + + Sbjct: 5 LLYDTDFITATSVTLSDDRYQHIRNIHQSKAGDSVRVGKLNGLMGTGIIQSIDQHAVKLT 64 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNM 124 + + + I + + + + + E+G+ + + + + + + Sbjct: 65 VELDQQPPAKLPLTIILALPRPKMIRRLFRSVAELGVEELIVINSYKVEKSFWLSPALDE 124 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +V+ Y S +Q LP + + ++ D +++ + + + Sbjct: 125 QKVQFYLASGLQQAKDTQLPKVTFKRLFKPFVE--DELPRLIKDCRGLIAHPGIGQPCPH 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + IGPEGG+ E + F + LG RILR + A + A+ Sbjct: 183 TIESRSVLAIGPEGGFTDYEVGKFIDVGF-EGIHLGERILRVENA-LTAIT 231 >gi|227503128|ref|ZP_03933177.1| protein of hypothetical function (DUF558) [Corynebacterium accolens ATCC 49725] gi|227076189|gb|EEI14152.1| protein of hypothetical function (DUF558) [Corynebacterium accolens ATCC 49725] Length = 247 Score = 86.5 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 34/237 (14%) Query: 11 FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65 F+ L SG + + V RM++G+ + L +G ++ + Sbjct: 6 FIHPDLSAAQAGDAITLSGPEARHAVTVKRMQQGEKLALIDGTGIRLTLTVTETSGKDHL 65 Query: 66 RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119 V+ + V + + K+ R + + + + G I + Sbjct: 66 TGTVDSVTHLPEPHPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125 Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGS- 174 + + + +AA+Q +P + P T + L + + +V +E S Sbjct: 126 APKAVAKWQAAAEAAAKQSRRDRIPQVRGPLTTRQLVAELAERAESASVLVLHEEATESI 185 Query: 175 -----ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 + L L TL V + LGP +LR+ Sbjct: 186 REVGLHGEVFLLVGPEGGIGEEEL------------TTLREAGAV-AIKLGPEVLRT 229 >gi|332686844|ref|YP_004456618.1| ribosomal RNA small subunit methyltransferase E [Melissococcus plutonius ATCC 35311] gi|332370853|dbj|BAK21809.1| ribosomal RNA small subunit methyltransferase E [Melissococcus plutonius ATCC 35311] Length = 122 Score = 86.5 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 4/121 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F++ + +G+ YH++ HV+RM L + L++I + S Sbjct: 1 MQRYFLEEDYQPIEVYQVAGEHYHHIVHVMRMVPSAKCYLVFNNNIAILAEIIEITSSTV 60 Query: 67 F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122 ++E + + V S K ++L+++IQK E+G + + + Sbjct: 61 LFRELEKEIMQKELPIAVTVACSYPKGDKLEWIIQKGTELGTHQFLGFPSENSIIKWEEK 120 Query: 123 N 123 Sbjct: 121 K 121 >gi|403003|emb|CAA51714.1| unnamed protein product [Erwinia chrysanthemi] Length = 93 Score = 86.5 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 6 HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 + R+F L + S D +++ VLRM G + LF+G + + ++I GK Sbjct: 2 RIPRIFHPDTLTPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKK 61 Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRL 94 +R + Q+ ++ + + ++ Sbjct: 62 NVRVRYAAGQTENRESPLHLHLGQVMSRGEKM 93 >gi|326568756|gb|EGE18826.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis BC8] Length = 237 Score = 86.5 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 +L VL + GD I L GK +I ++ ++ + ++S + ++ + + Sbjct: 27 HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEIALTKSPPCKLNLVVVLA 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ-----CD 139 + L ++ G+ + + + T ++++ + R+ + I +Q Sbjct: 85 LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTIAP 144 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +TL + P + L IV L + +P V +++G EGG Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + E + L S+ V SLG RILR++ A V A+ G W Sbjct: 200 FIPYEIQLLVSVG-VQAASLGKRILRTE-------AAVNALLGRW 236 >gi|207108988|ref|ZP_03243150.1| 16S rRNA m3U1498 methyltransferase [Helicobacter pylori HPKX_438_CA4C1] Length = 174 Score = 86.5 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 18/186 (9%) Query: 60 YVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + K V+ Q I S I+ ++ ++ ++G+ + ++ Sbjct: 1 EITKKHALLRLVDAQPLEVIASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFS 60 Query: 118 QNTHY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 Q ++R + I + EQC L + + + +L + + F ET Sbjct: 61 QRNEKIDSTKLERFQKILIHSCEQCGRSALMELEAFSNTKEVLNAYPKASVLDFKGETLP 120 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + EK ++IGPEGG+ E+ + + L +L+S++A V Sbjct: 121 TSVGFEK----------GVIIGPEGGFSEPERGYFKEQK-IYRIPL-DMVLKSESACVFV 168 Query: 234 MALVQA 239 ++ Q Sbjct: 169 ASVAQV 174 >gi|312601158|gb|ADQ90413.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma hyopneumoniae 168] Length = 93 Score = 86.5 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I P + LL+ + + + E + ++ + N I+IGPEGG+ Sbjct: 2 IPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNINIPDNPQNTIIIIGPEGGFDD 56 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 E + L F ++LG RILRS+TAA+ + Sbjct: 57 VEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 88 >gi|50086439|ref|YP_047949.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter sp. ADP1] gi|49532415|emb|CAG70127.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 235 Score = 86.1 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 12/218 (5%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90 +L L ++ D + + +L++I + + Q + + V I + + Sbjct: 26 HLHKQLNIQVDDTLKVGIRNGKRYLTRIVAIEEQEIRVTPIQQEACPAKLPVTLIVAMPR 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIY 147 L +I SV +G+ I + +++ + ++ Y EQ +P I Sbjct: 86 PKVLRRLIMDSVTLGVERICLTHSYRVDKSYWQTPFLQQLDDYITLGLEQAGDTIVPDIQ 145 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 + +++ + I + E A +I+IGPEGG+ E + Sbjct: 146 LYKRFKPFVEDVLPSL-IAPLRPAFVAHPYAETAMPHAIEHPCSIIIGPEGGFIPYEVDL 204 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 L LG RILR++TA V + G + Sbjct: 205 LIKNG-CQAYHLGSRILRTETA-------VSYLLGRLF 234 >gi|296113587|ref|YP_003627525.1| RNA methyltransferase family protein [Moraxella catarrhalis RH4] gi|295921281|gb|ADG61632.1| RNA methyltransferase family protein [Moraxella catarrhalis RH4] gi|326565506|gb|EGE15677.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis 12P80B1] gi|326568630|gb|EGE18701.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis BC7] Length = 237 Score = 86.1 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 26/225 (11%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 +L VL + GD I L GK +I ++ ++ + ++S + ++ + + Sbjct: 27 HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L ++ G+ + + + T ++++ + R+ + I +Q P Sbjct: 85 LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTITP 144 Query: 145 FIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 I + L IV L + +P V +++G EGG Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + E + L S+ V SLG RILR++ A V A+ G W Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAVNALLGRW 236 >gi|326559586|gb|EGE10000.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis 7169] gi|326562674|gb|EGE12976.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis 103P14B1] gi|326567734|gb|EGE17840.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis BC1] gi|326574221|gb|EGE24169.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis 101P30B1] gi|326575006|gb|EGE24935.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis O35E] Length = 237 Score = 85.7 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 +L VL + GD I L GK +I ++ ++ + ++S + ++ + + Sbjct: 27 HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ-----CD 139 + L ++ G+ + + + T ++++ + R+ + I +Q Sbjct: 85 LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTIAP 144 Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 +TL + P + L IV L + +P V +++G EGG Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + E + L S+ V SLG RILR++ A V A+ G W Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAVNALLGRW 236 >gi|219684898|ref|ZP_03539840.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219671843|gb|EED28898.1| conserved hypothetical protein [Borrelia garinii PBr] Length = 238 Score = 85.7 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 15/217 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G+ I T T+ + + + Sbjct: 69 SNKLKKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q + LP I L+ LK F + ++S +KL I + N Sbjct: 129 LIAGAMQGGVTYLPKIKIMKNLKESLKYIKQE---NFEIKILLEKDSKKKLIDIEQVNNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 I++GPE G+ +EK+ + F + S+ ILR++ Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SSCSISSNILRTE 221 >gi|256372071|ref|YP_003109895.1| protein of unknown function DUF558 [Acidimicrobium ferrooxidans DSM 10331] gi|256008655|gb|ACU54222.1| protein of unknown function DUF558 [Acidimicrobium ferrooxidans DSM 10331] Length = 241 Score = 85.7 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 34/241 (14%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IR 66 F+ L +L R+ +I + +G+ + ++ VG+ I Sbjct: 15 FFIVDDLEAP---VVDDALAAHL-RARRLGPRASIWIGDGRGRVRAATLAEVGRRTARIE 70 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----TH 121 E ++ + ++P + RL +M+ K E+G+ + + + + + Sbjct: 71 ACGEIVAQPRRTPEVSIASYAPSR-ERLAWMVAKLAELGIADLWLLRAPHDRRGGEPLSA 129 Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181 + + R+ AA+Q ++ + I+ TL+ L + +V AD G + Sbjct: 130 HELGRLERIAREAAQQAEVPWVVRIHDVGTLDELPR-----DGVVVADPAGGGLVGRDVR 184 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 I+IGPE G + L V + L ILR +TAAV A AL+ A+ Sbjct: 185 ---------CIVIGPESG-------RIDGLADVRRVRLPGGILRVETAAVVAGALLVALG 228 Query: 242 G 242 G Sbjct: 229 G 229 >gi|111114883|ref|YP_709501.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo] gi|216263936|ref|ZP_03435930.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] gi|110890157|gb|ABH01325.1| hypothetical protein BAPKO_0062 [Borrelia afzelii PKo] gi|215979980|gb|EEC20802.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1] Length = 238 Score = 85.3 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 17/218 (7%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G+ I T T+ + + + Sbjct: 69 SNKLKKINVLIGMIRPIVAKRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I+ A Q + P I L+ LK F + +NS + L I N Sbjct: 129 LIAGAMQGGVTYFPKIKIMGNLKDSLKYIKQK---NFEIKILLEKNSKKNLIDIEQTNNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVT-PLSLGPRILRSD 227 I++GPE G+ +EK+ + F + +S P ILR++ Sbjct: 186 TIIVGPERGFTEKEKQLITQYNFASYSIS--PNILRTE 221 >gi|312972814|ref|ZP_07786987.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli 1827-70] gi|310332756|gb|EFP99969.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli 1827-70] gi|323154654|gb|EFZ40853.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli EPECa14] gi|323173841|gb|EFZ59470.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli LT-68] gi|332753789|gb|EGJ84168.1| ribosomal RNA small subunit methyltransferase E [Shigella flexneri K-671] gi|332754632|gb|EGJ84998.1| ribosomal RNA small subunit methyltransferase E [Shigella flexneri 2747-71] Length = 63 Score = 85.3 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 + R++ PL + D +++ VLRM G + LF+G + + ++I+ K Sbjct: 2 RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKA 61 >gi|328949325|ref|YP_004366662.1| ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] gi|328449649|gb|AEB15365.1| Ribosomal RNA small subunit methyltransferase E [Treponema succinifaciens DSM 2489] Length = 254 Score = 85.3 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 28/249 (11%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKS-- 64 LF + ++ ++ +L KEG++ ++ N + KIS K Sbjct: 5 LFSPEEIL--NPLDIQDERAQHILKILHKKEGESFSAGIIGNQAGTAVIKKISVEEKKSS 62 Query: 65 ---IRFKVEYQSRSQTKQS------DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115 FK T +S ++ I + +L +++ +G+ + T Sbjct: 63 DGKKIFKGGKIYFDFTPESDGKKLYPLKMIIGFPRPIQLKRLLRDMASLGVQEVHLTGTE 122 Query: 116 YTQNTHYNMDRVRTYTISAAE-------QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168 + ++ D A + Q +P ++ TL+ L+ D +++ Sbjct: 123 LGEKSYLKSDLATK--GEAEKFLLDGSVQAGSTQIPKLFIHQTLKNCLEQIDLEGKLLAL 180 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 D S++ L IG E G+ + E++ F LS+G RILR++T Sbjct: 181 DNIEPSQSLSCALKE--KPQKAIAAIGSERGWTNYERQLFRQNGF-ELLSMGKRILRTET 237 Query: 229 AAVAAMALV 237 A+ A++L+ Sbjct: 238 ASTVAVSLI 246 >gi|262370880|ref|ZP_06064204.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314242|gb|EEY95285.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 236 Score = 84.9 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 12/218 (5%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90 +L L +K GD + + L+++ V ++ + V I + + Sbjct: 26 HLHRHLELKAGDTLKVGIQNGKRHLTQVVEVSETAVRIKPLYEEPVPAKLPVTLIVAMPR 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIY 147 L +I +V +G+ I + + +++ + ++ Y EQ P I Sbjct: 86 PKVLRRLIMDAVTLGVEKIILLHSYRVDKSYWQTPFLQQLDQYVTLGLEQAGDTLAPKIE 145 Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207 + +++ + S K+ P ++IGPEGG+ E E Sbjct: 146 IYKRFKPFVEDQLPSLISADCPAYVAHPYSDAKMPFAIQHP-CTVVIGPEGGFIPYEVEL 204 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 L +SLG RI+R++T ++ + G + Sbjct: 205 LVKNG-CQAMSLGNRIIRTET-------VIPYVLGRLF 234 >gi|237751687|ref|ZP_04582167.1| ribosomal RNA small subunit methyltransferase E [Helicobacter bilis ATCC 43879] gi|229373053|gb|EEO23444.1| ribosomal RNA small subunit methyltransferase E [Helicobacter bilis ATCC 43879] Length = 227 Score = 84.6 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 8/205 (3%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++ F ++ HYL HV R K+G+ +L N D + L + K+ Sbjct: 1 MQ-FFYHKDSGLE-SITLDSKDAHYLFHVRRFKQGETLLTTNLNDMQ-LYSYQHEKKNTF 57 Query: 67 FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NM 124 + ++ ++ I + I + D ++ + + +++ ++Q +M Sbjct: 58 KLIGLHTQVTQPKAYAHIILAMIDLKDIYD-ILPILNALNVASLQLFYADFSQKNRKIDM 116 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 + + + QC + + LE + K + + I F + EN + Sbjct: 117 QKAQRMLQYSCMQCGRMKPLEVAIHKDLESVCKAFPNAIAIDFLESVETFENLTQ--QER 174 Query: 185 AHIPNVAILIGPEGGYHSEEKETLH 209 +I ++IG EGG+ E+ LH Sbjct: 175 QNIAKNGVIIGCEGGFSHNERNFLH 199 >gi|326564688|gb|EGE14906.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis 46P47B1] Length = 237 Score = 84.6 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 26/225 (11%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 +L VL + GD I L GK +I ++ ++ + ++S + ++ + + Sbjct: 27 HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L ++ G+ + + + T ++++ + R+ + I +Q P Sbjct: 85 LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTITP 144 Query: 145 FIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 I + L IV L + +P V +++G EGG Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + E + L S+ V SLG RILR++ A A+ G W Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAANALLGRW 236 >gi|326572624|gb|EGE22613.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis CO72] Length = 237 Score = 84.2 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 26/225 (11%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87 +L VL + GD I L GK +I ++ ++ + ++S + ++ + + Sbjct: 27 HLKTVLNVHHGDFIKL--GKLGGDMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L ++ G+ + + + T ++++ + R+ + I +Q P Sbjct: 85 LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTITP 144 Query: 145 FIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199 I + L IV L + +P V +++G EGG Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 + E + L S+ V SLG RILR++ A V A+ G W Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAVNALLGRW 236 >gi|192361275|ref|YP_001982410.1| 16S ribosomal RNA methyltransferase RsmE [Cellvibrio japonicus Ueda107] gi|190687440|gb|ACE85118.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus Ueda107] Length = 241 Score = 84.2 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 82/215 (38%), Gaps = 13/215 (6%) Query: 31 YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 ++ + K GD++ + NG G+ + + I ++ + + Sbjct: 31 HITRIHGAKVGDSLKAGILNGPIGQAQ-ILQLTDQEILVELNNLELVSPPALPLTLMLGL 89 Query: 89 IKTNRLDYMIQK-SVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILT 142 + L + Q + +G+ + + + + +++ D + I EQ Sbjct: 90 PRPKMLKRIFQTIAT-LGVKQLYLINSYRVEKSYWQTPFLQDDAIHEQLILGLEQGCDTQ 148 Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 LP ++ + ++ DH ++ + E V + +GPEGG+ Sbjct: 149 LPEVHLIKRFKPFVE--DHLPDLIGHSRALVAHPYTEAPCPRELNKPVTLAVGPEGGFIP 206 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + L F TP++LG RILR +TA ++ + Sbjct: 207 YEVDMLVRNGF-TPITLGQRILRVETAIPFLLSRL 240 >gi|169497329|gb|ACA58045.1| hypothetical protein ACU_0003 [uncultured bacterium] Length = 180 Score = 84.2 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 2 KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 + RL V L + Q HYL +VLR+K GD +L FNGKDGEW + ++ Sbjct: 102 QYDFRSPRLHVTGALKPGAEVTIDKSQAHYLRNVLRLKPGDGVLAFNGKDGEWQAALAD- 160 Query: 62 GKSIRFKVEYQSRSQTKQ 79 GK ++ Q+R QT+ Sbjct: 161 GKRTALVLQEQTRPQTEP 178 >gi|257483560|ref|ZP_05637601.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 88 Score = 83.8 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65 L R F + PL + + Q HY++ VLRM EGD + LF+G E+ + VGK Sbjct: 2 RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60 Query: 66 RFKVEYQSRSQTKQSDVQYIFSP 88 +S + +S ++ Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQ 83 >gi|119505066|ref|ZP_01627142.1| hypothetical protein MGP2080_15294 [marine gamma proteobacterium HTCC2080] gi|119459048|gb|EAW40147.1| hypothetical protein MGP2080_15294 [marine gamma proteobacterium HTCC2080] Length = 237 Score = 83.8 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 22/233 (9%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEY 71 + SG ++ ++ VL EGD++ + NG G L I + + Sbjct: 9 TEVSSDQIVSLSGRRHKHVRDVLHSTEGDSLRVGVINGATGTGL--ILSMNEVTLELRVE 66 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDR 126 + + + + L ++ E G+ I + + + +++ ++ Sbjct: 67 LMDAPLPYHSTTLVLALPRPKMLRRTLRSCAEFGVRDIHIIQSYRVEKSYWQSPLLKPEK 126 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGSENSLEKL 181 +R ++ E+ LP + + +++ + L Sbjct: 127 IREALLAGLERSGDTRLPVVTLHRRFKPFVEDQLAGIAGKNPIFLLHP------GDFPPL 180 Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 P+V I+IGPEGG+ E + P SLG RIL DT A + Sbjct: 181 ETSLLGPHV-IMIGPEGGFIPYEVDLACRSG-AQPRSLGSRILSVDTTVPAVL 231 >gi|291287910|ref|YP_003504726.1| hypothetical protein Dacet_2007 [Denitrovibrio acetiphilus DSM 12809] gi|290885070|gb|ADD68770.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM 12809] Length = 233 Score = 83.8 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 14/206 (6%) Query: 29 YHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86 ++ +VL+ EG+ I + NG+ G + I + S ++ + DV I Sbjct: 23 ASHIRYVLKSAEGETIKAGILNGEIG--KAVIEDISDSGVTVSFQPEKAPPEACDVSLIL 80 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDIL 141 + + ++ V G+ + + T + +++ + + Y + A QC Sbjct: 81 ALPRPKAFRRILFGIVTAGVKDVHVINTWRVEKSYWQSPYLSDENINKYCLEALMQCRDT 140 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201 +P I+ ++ + T + A P A+ IGPEGG+ Sbjct: 141 VMPDIHFYRFFTDF---FEEGLPTIPEKRTRFIAHPYGDSGAFVRSP-AAVAIGPEGGFI 196 Query: 202 SEEKETLHSLPFVTPLSLGPRILRSD 227 E ET F TP SLG RIL ++ Sbjct: 197 DRELETFIRAGF-TPFSLGERILTTE 221 >gi|290991223|ref|XP_002678235.1| predicted protein [Naegleria gruberi] gi|284091846|gb|EFC45491.1| predicted protein [Naegleria gruberi] Length = 205 Score = 83.4 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 20/179 (11%) Query: 72 QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRV 127 Q +Q K V K+ + + M+ MG+ I P++T Q+ Y DR+ Sbjct: 21 QLLNQRKLFSVTASICMTKSRDTFEEMMYTCSSMGVNKIIPIMTEKKQHAEYFENKKDRL 80 Query: 128 RTYTISAAEQCDILT-LPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSENSLEKLHAI 184 ISA EQ +P I P +++ K + VF D G + L L+ I Sbjct: 81 EKIMISAVEQSKQFYGMPEIASPLSIQDYCKQMKEQLNERRVFLD-VDGEKPWLSLLNEI 139 Query: 185 AHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI-LRSDTAAVAAMAL 236 N+ +L+GPE +E+ L L F + LSL +I RS+ A+++ Sbjct: 140 EENKQKMNKMNINLLVGPERDLFDQERAQLAELGFES-LSLARKIVYRSE----VALSV 193 >gi|330886147|gb|EGH20048.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. mori str. 301020] Length = 235 Score = 83.4 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R K GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAKVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q MG+ + + + + + + + + Sbjct: 68 DSAPPAKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ G+ + + Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|167462197|ref|ZP_02327286.1| hypothetical protein Plarl_06505 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 87 Score = 83.4 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 167 FADETCGSENSLEKLHAIAHIPN-------VAILIGPEGGYHSEEKETLHSLPFVTPLSL 219 E S + L + + +++GPEGG+ +E E + L Sbjct: 1 ICYEKEDSLQIRDALFQADALKRNDDKPVRIMLIVGPEGGFTEKEIEQAEESG-CRSIGL 59 Query: 220 GPRILRSDTAAVAAMALVQAICG 242 G RILR++TAA+ + + G Sbjct: 60 GTRILRTETAAMVGLTCILYETG 82 >gi|89095543|ref|ZP_01168447.1| hypothetical protein MED92_15720 [Oceanospirillum sp. MED92] gi|89080192|gb|EAR59460.1| hypothetical protein MED92_15720 [Oceanospirillum sp. MED92] Length = 236 Score = 83.4 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 75/208 (36%), Gaps = 19/208 (9%) Query: 40 EGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMI 98 G+ + + ++ + +S I+F+V S+ + + + L ++ Sbjct: 35 IGETLKVGLLNGHMGTGQVLAIDESSIKFQVILNSQPPAPLPC-TLLLALPRPKMLKRVL 93 Query: 99 QKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS----AAEQCDILTLPFIYPPTTL-- 152 Q MG+ + + + ++++ + EQ +P ++ Sbjct: 94 QTVSAMGVKQLYLINSYRVDKSYWSSPVLEKQINEHLLLGLEQAGDTVMPEVHLRKRFKP 153 Query: 153 ---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209 + L ++ IV + E + IGPEGG+ E E L+ Sbjct: 154 FVEDELPDIARNSRAIVAHPYLAKPCPTAENTLT-------TLAIGPEGGFIPYEIEKLN 206 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237 F + +G RILR +TA A ++ + Sbjct: 207 EAGFESA-HIGERILRVETAVPALLSRL 233 >gi|225552017|ref|ZP_03772957.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225371015|gb|EEH00445.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 238 Score = 83.4 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 16/229 (6%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75 KT + + +L +L++K+ D +L G+ + I K + FK ++ Sbjct: 12 KTGILLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIGE 68 Query: 76 QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130 K + + I+ +I++ +G+ I T T+ + + + + Sbjct: 69 SNKLKKLYVLIGMIRPIVAKRIIKELASIGIYKIFFFNTELTEKSYLNSKIFKNNDFKKH 128 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 I A Q +I LP I L+ LK F + +NS + L I I N Sbjct: 129 LIDGAMQGEITYLPKIKIMKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 AI++GPE G+ +EK+ + F + S+ LR++TA +AA +++ A Sbjct: 186 AIIVGPERGFTEKEKQLISQYNF-SSYSISTNTLRTETATIAA-SIITA 232 >gi|77456607|ref|YP_346112.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens Pf0-1] gi|77380610|gb|ABA72123.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 83.0 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 18/217 (8%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90 ++ V R + GD++ + +++ + + + + + + + Sbjct: 26 HMQEVHRSEVGDSLRVGCIGGLMGSAELLRLDAGEAELRVNLDQPPPAKLPLTLVLALPR 85 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPF 145 L + Q MG+ + V + + + + D +R I EQ LP Sbjct: 86 PKMLRRVFQTVATMGVSKVILVNSYRVEKSFWQTPFLEPDAIREQLILGLEQARDTVLPE 145 Query: 146 IYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 I + +++ D +V N A+ V + IGPEGG+ Sbjct: 146 IIIEKRFKPFVEDRLPAITDGTLGLVGHP-----GNFPPCPRALNEP--VTLAIGPEGGW 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E + L + P+ LG RILR +TA A +A + Sbjct: 199 IPYEIDLLAKAG-LQPVQLGERILRVETAVTALLARL 234 >gi|152986036|ref|YP_001351129.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PA7] gi|150961194|gb|ABR83219.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 235 Score = 83.0 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 24/238 (10%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK---ISYVGKSIRFKV 69 D + + +L V R + GD + + G+ G W+ + + + +V Sbjct: 8 DADFVSADRAVLHDRRLRHLHEVHRAENGDTLRV--GRLGGWMGEGRLLQLDAREATLEV 65 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD---- 125 + K + + + + L ++Q MG+ + + + + + + Sbjct: 66 RFDQPPPAKLP-ITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDP 124 Query: 126 -RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R + EQ LP I + +++ GS + Sbjct: 125 PAIRENLVLGLEQARDTVLPEIIVEKRFKPFVEDRLPAL-------AAGSLGLVGHPGPW 177 Query: 185 AHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 178 PACPRAVEKPVTLAIGPEGGWIPYEVDKLREAG-LHPVQLGERILRVETAVTALLARL 234 >gi|260435536|ref|ZP_05789506.1| RNA methyltransferase superfamily protein [Synechococcus sp. WH 8109] gi|260413410|gb|EEX06706.1| RNA methyltransferase superfamily protein [Synechococcus sp. WH 8109] Length = 234 Score = 83.0 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 10/224 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + + + + ++ VLR GDNI + +I + + ++ Sbjct: 13 DERKVRLVDRRADHIRSVLRAAVGDNIRVGELNGDLGQGRICVLDEDAVVLEVDLNQPPP 72 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTI 132 + + + + L + + E G+ + + + +++ ++V + Sbjct: 73 PRHRFDIVLALPRPKVLRRLFRTVAEYGVANLHLINCARVEKSYWQSPLLAPEKVNDALL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192 + E+ P ++ +++ + + A C L A+ Sbjct: 133 AGMERASDTVAPRVHQHWRFRPFVED---QLKDLCAGRPCWMAQMGAALPLRETPAGAAV 189 Query: 193 L-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 + +GPEGG+ E E ++ P+ LG R L DTA A+A Sbjct: 190 VMVGPEGGFVPFELELAQAV-IAQPVHLGSRTLSVDTALTTALA 232 >gi|255320315|ref|ZP_05361500.1| RNA methyltransferase, RsmE family [Acinetobacter radioresistens SK82] gi|262380512|ref|ZP_06073666.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255302754|gb|EET81986.1| RNA methyltransferase, RsmE family [Acinetobacter radioresistens SK82] gi|262297958|gb|EEY85873.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 237 Score = 82.6 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 12/221 (5%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 Q +L L +K GD + + +L++I + + + + V I + Sbjct: 23 QVQHLHQHLNIKTGDTLKVGIRNGERYLTEIVALNDNTVQVRPLKQEQLPDKLPVTLIVA 82 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L +I SV +G+ I + + +++ + ++ +Y EQ P Sbjct: 83 MPRPKVLRRLIMDSVTLGVEKIILLHSYRVDKSYWQTPFLQQIESYVTLGLEQAGDTIAP 142 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 + + +++ S + + + P ++IGPEGG+ E Sbjct: 143 AVEIHKRFKPFVEDILPGLISAQQPAYVAHPYSEQAMPSSIVHP-CTVIIGPEGGFIPYE 201 Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 E L + LG RI+R++T ++ + G + Sbjct: 202 IELLTQNG-CQAVHLGQRIIRTET-------VIPYVLGRLF 234 >gi|49082026|gb|AAT50413.1| PA5071 [synthetic construct] Length = 236 Score = 82.6 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 26/241 (10%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKSIRFKVE 70 D + + +L V R + GD + + G+ G W+ + + + S Sbjct: 8 DADFVSADRAVLHDRRLKHLHEVHRAENGDTLRV--GRLGGWMGEGRLLKLDASEATLEV 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 + + + + + + L ++Q MG+ + + + + + + Sbjct: 66 RFDQPPPAKLPITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDPA 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R + EQ LP I + +++ GS + Sbjct: 126 AIRENLVLGLEQARDTVLPEIIVEKRFKPFVEDRLPAL-------AAGSLGLVGHPGPWP 178 Query: 186 HIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P V + IGPEGG+ E + L + P+ LG RILR +TA ++ + A Sbjct: 179 ACPRAVEKPVTLAIGPEGGWIPYEVDKLREAG-LHPVQLGERILRVETA----VSALLAR 233 Query: 241 C 241 Sbjct: 234 L 234 >gi|229221139|ref|YP_272667.2| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. phaseolicola 1448A] Length = 235 Score = 82.6 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R + GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + ++ + + + + L + Q MG+ + + + + + + + + Sbjct: 68 DSAPPEKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ G+ + + Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|15600264|ref|NP_253758.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PAO1] gi|107104170|ref|ZP_01368088.1| hypothetical protein PaerPA_01005243 [Pseudomonas aeruginosa PACS2] gi|116053218|ref|YP_793540.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa UCBPP-PA14] gi|218894170|ref|YP_002443039.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa LESB58] gi|254238222|ref|ZP_04931545.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254244047|ref|ZP_04937369.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391921|ref|ZP_06881396.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa PAb1] gi|313110109|ref|ZP_07796011.1| hypothetical protein PA39016_002230035 [Pseudomonas aeruginosa 39016] gi|9951364|gb|AAG08456.1|AE004920_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115588439|gb|ABJ14454.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170153|gb|EAZ55664.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126197425|gb|EAZ61488.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218774398|emb|CAW30215.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] gi|310882513|gb|EFQ41107.1| hypothetical protein PA39016_002230035 [Pseudomonas aeruginosa 39016] Length = 235 Score = 82.6 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 26/241 (10%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKSIRFKVE 70 D + + +L V R + GD + + G+ G W+ + + + S Sbjct: 8 DADFVSADRAVLHDRRLKHLHEVHRAENGDTLRV--GRLGGWMGEGRLLKLDASEATLEV 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 + + + + + + L ++Q MG+ + + + + + + Sbjct: 66 RFDQPPPAKLPITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDPA 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R + EQ LP I + +++ GS + Sbjct: 126 AIRENLVLGLEQARDTVLPEIIVEKRFKPFVEDRLPAL-------AAGSLGLVGHPGPWP 178 Query: 186 HIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 P V + IGPEGG+ E + L + P+ LG RILR +TA ++ + A Sbjct: 179 ACPRAVEKPVTLAIGPEGGWIPYEVDKLREAG-LHPVQLGERILRVETA----VSALLAR 233 Query: 241 C 241 Sbjct: 234 L 234 >gi|209878384|ref|XP_002140633.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris RN66] gi|209556239|gb|EEA06284.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris RN66] Length = 377 Score = 82.3 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 15/166 (9%) Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-----YTISA 134 + + + + D ++Q + +G+G I V T ++ ++ N ++ Sbjct: 154 PVIDLLVALPRPKVFDKVLQYAASIGVGRIIFVCTNKSEKSYLNSSKLHRESIHHSIQLG 213 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFADETCGSENSLEKLHAIAHIP 188 EQ P +Y + LK + + AD + S L H Sbjct: 214 LEQACNTLFPEVYLYASWNSCLKYLRDDFLDKNTMLGIIADNKSSTIISDVGLQ--RHTG 271 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + I +GPEGG+ E L L F S+G R+L+ + AA+ A+ Sbjct: 272 SAIIAVGPEGGWSQSEIGDLIGLGF-KSCSIGSRVLKVE-AAMIAL 315 >gi|260550212|ref|ZP_05824425.1| conserved hypothetical protein [Acinetobacter sp. RUH2624] gi|260406740|gb|EEX00220.1| conserved hypothetical protein [Acinetobacter sp. RUH2624] Length = 235 Score = 82.3 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 16/201 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGVRYITEIVSMNDHEVRIRPIREEALPTKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ + Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDQYVTLGLEQAGDTIVPEIQMYKRFKPFVEDV---LPTL 161 Query: 167 FADETCG--SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 ++E+ + E+ I ++++GPEGG+ E + L +SLG RIL Sbjct: 162 ISEESPAYVAHPYAEQSMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRIL 220 Query: 225 RSDTAAVAAMALVQAICGDWY 245 R++T + I G + Sbjct: 221 RTET-------SISYILGRLF 234 >gi|78213120|ref|YP_381899.1| hypothetical protein Syncc9605_1595 [Synechococcus sp. CC9605] gi|78197579|gb|ABB35344.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 234 Score = 82.3 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 10/224 (4%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + + + + ++ VLR GD+IL+ +I + ++ Sbjct: 13 DERKVRLVDRRADHIRSVLRAAVGDSILVGELGGDLGQGRICALDADAVVLEVELNQPPP 72 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTI 132 + + + + L + + E G+ + + + +++ ++V + Sbjct: 73 PRHRFDIVLALPRPKVLRRLFRTVAEFGVANLHLINCARVEKSYWQSPLLAPEKVNDALL 132 Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHIPNVA 191 + E+ P ++ +++ + + A C L Sbjct: 133 AGMERASDTVAPRVHQHRRFRPFVED---QLKDLCAGRPCWMAQMGASLPLRDTPRGTAV 189 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 +++GPEGG+ E E + P+ LG R L DTA AA+A Sbjct: 190 VMVGPEGGFVPFELELAQEV-IAQPVHLGSRTLSVDTALTAALA 232 >gi|260557926|ref|ZP_05830139.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] gi|260408717|gb|EEX02022.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] Length = 235 Score = 82.3 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 74/200 (37%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPIREELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVERI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ N ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPN--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L +SLG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|239503849|ref|ZP_04663159.1| 16S rRNA m3U1498 methyltransferase [Acinetobacter baumannii AB900] Length = 235 Score = 82.3 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPIREEPLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ + ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L +SLG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|254429785|ref|ZP_05043492.1| conserved hypothetical protein TIGR00046, putative [Alcanivorax sp. DG881] gi|196195954|gb|EDX90913.1| conserved hypothetical protein TIGR00046, putative [Alcanivorax sp. DG881] Length = 238 Score = 82.3 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 18/209 (8%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYIFSPI 89 ++ VL + E ++ + + + VE++ S + + + + + Sbjct: 26 HVRTVLNLAEEQQCRAGLLGGSTGMATVKSIENN-EVTVEFKPLSHPEAALPLSLLMALP 84 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILTLP 144 + L ++ + +G+ I + + + + D +R I EQ LP Sbjct: 85 RPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMILGLEQARDTCLP 144 Query: 145 FIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 + E L W + Q + A G +L V + +GPEGG+ Sbjct: 145 ELILAPRFKPFVEDSLDEWAGSGQRILAH--PGDYPTLPC----NLTEPVTLAVGPEGGW 198 Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTA 229 E + L F S G RILR +TA Sbjct: 199 TPYEVDMLQRQGFACH-SFGARILRVETA 226 >gi|325068582|ref|ZP_08127255.1| hypothetical protein AoriK_12206 [Actinomyces oris K20] Length = 130 Score = 81.9 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQS 73 T +G + + V R++ + + L +G + +++ G + +V + Sbjct: 25 GTVLMLTGPEARHAVTVKRLRAEERVDLVDGAGLRLVCEVTGAGVGGAKDRLAVRVLERV 84 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117 + + + K R + ++ + E+G+G + P + Sbjct: 85 EEPEPSLRLTLVQALAKGGRDEQAVETATEVGVGLVLPWQSERC 128 >gi|331006496|ref|ZP_08329796.1| hypothetical protein IMCC1989_369 [gamma proteobacterium IMCC1989] gi|330419696|gb|EGG94062.1| hypothetical protein IMCC1989_369 [gamma proteobacterium IMCC1989] Length = 207 Score = 81.9 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 12/169 (7%) Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 ++ + I + + + ++Q MG+ I + + + +++ D++ Sbjct: 40 TKQPPAPLPLTLIIALPRPKMIKRILQTCATMGVKDIIFLNSYRVEKSYWQTPLLQEDKI 99 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-ENSLEKLHAIAH 186 + + EQ + P TLE K + + + G + +L H Sbjct: 100 QEQLLLGLEQGK----DTLLPKVTLEKRFKPFVEDRLPALCKTSIGLIAHPHSELPCPTH 155 Query: 187 I-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + ++IGPEGG+ E + + S ++LG RILR +TA + Sbjct: 156 VTQHTTLVIGPEGGFIPYEVDKIQSAG-CQGITLGQRILRVETAIPVLL 203 >gi|71557556|gb|AAZ36767.1| Protein of unknown function (DUF558) family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 219 Score = 81.5 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 18/218 (8%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 ++ V R + GD++ + +++ + + ++ + + + Sbjct: 9 KHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSLDSAPPEKLPITLLLALP 68 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLP 144 + L + Q MG+ + + + + + + + +R I EQ LP Sbjct: 69 RPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDSVLP 128 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIGPEGG 199 + + +++ G+ + + P V + IGPEGG Sbjct: 129 EVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPACPRAVTQPVTLAIGPEGG 181 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + E + L + P+ LG RILR +TA A +A + Sbjct: 182 WIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 218 >gi|330807080|ref|YP_004351542.1| hypothetical protein PSEBR_a397 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375188|gb|AEA66538.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 235 Score = 81.5 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 22/237 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVE 70 + + S + ++ V R GD++ + G+ +++ + Sbjct: 8 EADFIGPDRVVLSDRRLTHMQEVHRSAVGDSLRV--GRIGGLMGTAQVLRLEAREAELQV 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 + + + + + + L + Q MG+ + V + + + + + Sbjct: 66 TLDQPPPAKLPLTLVLALPRPKMLRRVFQTVATMGVPRVVLVNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +R I EQ LP I + P + L D +V N Sbjct: 126 AIREQLILGLEQARDSVLPEIIIEKRFKPFVEDRLPAMTDGTLGLVGHP-----GNYPPC 180 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A+ V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 181 PRALTEP--VTLAIGPEGGWIPYEIDLLAKAG-LQPVQLGERILRVETAVTALLARL 234 >gi|330984759|gb|EGH82862.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 235 Score = 81.5 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R + GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q MG+ + + + + + + + + Sbjct: 68 DSAPPAKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ G+ + + Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|332872822|ref|ZP_08440787.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6014059] gi|323519753|gb|ADX94134.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii TCDC-AB0715] gi|332738983|gb|EGJ69845.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6014059] Length = 235 Score = 81.1 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPICEELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVERI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ + ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L +SLG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|225164860|ref|ZP_03727082.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] gi|224800529|gb|EEG18903.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2] Length = 169 Score = 81.1 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 17/168 (10%) Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTIS 133 + I + ++ ++ +G+ AI V T Y +T ++ R + + Sbjct: 1 MPTITLIVGLPRPQTARKILFEATTLGVRAIHFVTTEKTDPNYASSTLWSSGEWRRHLVD 60 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFA-DETCGSENSLEKLHAIAH 186 AA+Q LP + TL +L + D ++ E SL + A Sbjct: 61 AAQQAFDTRLPLVTWDRTLAQILSDAVGDDVSDSPLRVALDNYEATVGLRSLTRQTAT-- 118 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234 + + IGPE G+ +++ L + F T LGPR+LR +T VAA+ Sbjct: 119 --DACVAIGPERGWGERDRQQLRAAGF-TLAHLGPRVLRVETPVVAAL 163 >gi|187917941|ref|YP_001883504.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia hermsii DAH] gi|119860789|gb|AAX16584.1| hypothetical protein BH0062 [Borrelia hermsii DAH] Length = 240 Score = 81.1 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 23/222 (10%) Query: 29 YHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 ++ +L++K + +L G++ + I + FK ++ K ++ I Sbjct: 22 VKHINEILKLKNNETFKFGIL--GEEHIYSC-IYQKDTKLFFKKHHKIAKSNKLKKLKVI 78 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISAAEQCDI 140 ++ +I +G+ I ++ + Y I A Q I Sbjct: 79 IGLVRPIAAKRIITHLGSIGISEIIFFNALLSEKSYSCSKLFKKKEYEKYLIEGAMQGGI 138 Query: 141 LTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + L +L N +++ +I+ E S+N L L+ N ++IGP Sbjct: 139 TYIPKVNIINNLIEVLNNTEYDKSDTTKILLERE---SKNKLVDLNI--ETKNTVVIIGP 193 Query: 197 EGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMALV 237 E G+ ++E + F +S ILR++TA + A ++ Sbjct: 194 ERGFITKEINLIKEYDFNAYNIS--SNILRTETATIVASTII 233 >gi|257482904|ref|ZP_05636945.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009557|gb|EGH89613.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 235 Score = 81.1 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R + GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q MG+ + + + + + + + + Sbjct: 68 DSAPPAKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP I + +++ G+ + + Sbjct: 128 REQLILGLEQARDSVLPEIIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|169794371|ref|YP_001712164.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii AYE] gi|213159050|ref|YP_002321049.1| hypothetical protein AB57_3759 [Acinetobacter baumannii AB0057] gi|301347119|ref|ZP_07227860.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii AB056] gi|301512361|ref|ZP_07237598.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii AB058] gi|301597507|ref|ZP_07242515.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii AB059] gi|332854814|ref|ZP_08435577.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013150] gi|332868944|ref|ZP_08438503.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013113] gi|169147298|emb|CAM85159.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213058210|gb|ACJ43112.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|332727816|gb|EGJ59220.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013150] gi|332732987|gb|EGJ64189.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii 6013113] Length = 235 Score = 81.1 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPIREELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ + ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYATLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L +SLG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|119952865|ref|YP_945074.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae 91E135] gi|119861636|gb|AAX17404.1| hypothetical protein BT0062 [Borrelia turicatae 91E135] Length = 240 Score = 81.1 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 92/236 (38%), Gaps = 23/236 (9%) Query: 15 PLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEY 71 P +K + + ++ +L++K + ++ G++ + + F+ + Sbjct: 8 PDELKNGLILNDSRVKHINEILKLKNNETFKFGII--GEEHIYSCVYQK-DVKLFFRKNH 64 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDR 126 + K ++ I ++ +I MG+ + ++ + Sbjct: 65 KIAKSNKLKKLKVIIGLVRPIAAKRIITHLGSMGISELIFFNALLSEKSYSCSKLFKERE 124 Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLH 182 Y I A Q I +P + L +LKN ++ +I+ E S+N L L+ Sbjct: 125 YEKYLIEGAMQGGITYIPKVNILNNLREVLKNTEYEGSNTTKILLERE---SKNKLVDLN 181 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMALV 237 N ++IGPE G+ ++E + F +S ILR++TA + A A++ Sbjct: 182 I--KTKNTVVIIGPERGFITKEINLIKEYNFNAYNIS--SNILRTETATIVASAII 233 >gi|221503309|gb|EEE29007.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 232 Score = 80.7 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 10/137 (7%) Query: 104 MGMGAIRPVITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 +G+G + V + + + + R + + EQ +P + + + L+ Sbjct: 64 LGVGRLLLVCSERVEKGYLSSPKLSRENIEKQLQTGLEQGVSTRVPEVQVFASWQALMVF 123 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 + + T S+ + + A + V + IGPEGG+ +E E L S Sbjct: 124 LRRSR----SPCTFHSQQKDKIIQAHS-GGRVLVAIGPEGGWIDQEVEELRETQGFEFFS 178 Query: 219 LGPRILRSDTAAVAAMA 235 LG R+LR +TA V+ +A Sbjct: 179 LGDRVLRCETAVVSVIA 195 >gi|320322091|gb|EFW78187.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. B076] gi|320330808|gb|EFW86782.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. race 4] gi|330872024|gb|EGH06173.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. glycinea str. race 4] Length = 235 Score = 80.7 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R + GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + ++ + + + + L + Q MG+ + + + + + + + + Sbjct: 68 DSAPPEKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ G+ + + Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDRLPQM-------AAGTLGLVGHPGDLPAC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|184159825|ref|YP_001848164.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii ACICU] gi|183211419|gb|ACC58817.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|322509738|gb|ADX05192.1| rsmE [Acinetobacter baumannii 1656-2] Length = 235 Score = 80.7 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPIREEPLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ + ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQVDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L +SLG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|302340578|ref|YP_003805784.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM 11293] gi|301637763|gb|ADK83190.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM 11293] Length = 257 Score = 80.7 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 92/231 (39%), Gaps = 18/231 (7%) Query: 22 GKASGDQYHYLAHVLRMKEGDNIL--LFNG-KDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 D+ +L +L +K+GD + + +G + + +I G + F + + ++ Sbjct: 21 LPLFDDRARHLLKILGVKKGDVVRAGIADGPRGKASVDEIQEDGIVLSFVPDSGEQEESA 80 Query: 79 ---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-----RTY 130 + + ++ +++++ +G+ +I V T + ++ Y Sbjct: 81 GIGPFLLDLVVGQVRPICAKRILREAAMLGVSSISVVGTDLGERSYREAKLWSSGEAERY 140 Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKLHAIAHIP 188 I Q +P + +L+ L + + + D S+ E + + Sbjct: 141 LIDGVVQAAATAIPALRLFESLDHYLSDAIFSPEYLRITLDNVAPSKPLFEFAGKLPAV- 199 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 + +G E G+ E++ + LG RILR++TA+ AA+A++ A Sbjct: 200 ---LAVGSERGWSDRERKLFSKAGWSFA-GLGGRILRTETASTAALAILLA 246 >gi|70733923|ref|YP_257563.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens Pf-5] gi|68348222|gb|AAY95828.1| Protein of unknown function (DUF558) family [Pseudomonas fluorescens Pf-5] Length = 235 Score = 80.7 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 22/219 (10%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 ++ V R+ GD++ + G+ +++ + + + + + + + Sbjct: 26 HMQDVHRVAVGDSLRV--GRIGGLMGSAQVLRLEPAEAELQVTLDQPPPAKLPLTLVLAL 83 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTL 143 + L + Q MG+ + V + + + + + +R + + EQ L Sbjct: 84 PRPKMLRRVFQTIATMGVPRLVLVNSYRVEKSFWQTPFLEPETIREHLVLGLEQARDTVL 143 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIGPEG 198 P + + +++ + G+ + P V + IGPEG Sbjct: 144 PDVLIEKRFKPFVEDRLPAL-------SAGTLGLVGHPGPYPPCPRGLDQAVTLAIGPEG 196 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 G+ E + L + P+ LG RILR +TA A ++ + Sbjct: 197 GWIPYEIDLLGKAG-LQPVQLGERILRVETAVTALLSRL 234 >gi|297569051|ref|YP_003690395.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] gi|296924966|gb|ADH85776.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus AHT2] Length = 264 Score = 80.7 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 91/264 (34%), Gaps = 36/264 (13%) Query: 10 LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRF 67 + V+ + +++ +L+ + GD + + +G G +++ V + Sbjct: 4 ILVEHHEITADTITLRDRRAEHISRILKSRPGDLLRAGIIDGPMG--SAQVLAVARREVT 61 Query: 68 KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HY 122 + ++ I + + L ++ ++ MG+ I + R + + Sbjct: 62 IRLDCRQEPPAKAATALILAIPRPIMLKRVLAQAAAMGVQRIMLINARRVEKSFFHSSQL 121 Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGSEN 176 + +R + EQ LP + +++ + +++ E Sbjct: 122 SPAGIRAALLQGLEQAGDTRLPEVTLHPRFRPFIEDQLPPPRPNGPLRLLAHPTKKPVEM 181 Query: 177 SLEKLHAIAHIPN--------------------VAILIGPEGGYHSEEKETLHSLPFVTP 216 + L P+ + IGPEGG+ E F TP Sbjct: 182 ATASLRQSETGPDDPLPAGNLRGAAPAAVPARRQMLAIGPEGGWVDFEINCFAKQGF-TP 240 Query: 217 LSLGPRILRSDTAAVAAMALVQAI 240 S GPRILR DTA +AL +A+ Sbjct: 241 FSWGPRILRVDTAVPVLLALAEAL 264 >gi|293610593|ref|ZP_06692893.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826937|gb|EFF85302.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 235 Score = 80.3 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 14/210 (6%) Query: 40 EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ 99 G N+ + + ++I + + + V I + L +I Sbjct: 35 VGQNLKVGVRNGARYTTEIVSMNEQEVCIRPITEEVVPAKLPVHLIVGLPRPKVLRRLIM 94 Query: 100 KSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 SV +G+ I + + +++ + ++ Y EQ +P I + + Sbjct: 95 DSVTLGVERISLIHSYRVDKSYWQTPFLQQLDNYVTLGLEQAGDTIVPEIQLYKRFKPFV 154 Query: 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVT 215 ++ N ++ + + + +IP+ +++GPEGG+ E + L Sbjct: 155 EDVLPN--LISKESPAYVAHPYAEQSMPVNIPHACSVVVGPEGGFIPYEIDLLTKNG-CQ 211 Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDWY 245 +SL RILR++T + I G + Sbjct: 212 AVSLCNRILRTET-------SISYILGRLF 234 >gi|237840771|ref|XP_002369683.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|211967347|gb|EEB02543.1| hypothetical protein, conserved [Toxoplasma gondii ME49] Length = 232 Score = 80.3 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 10/137 (7%) Query: 104 MGMGAIRPVITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 +G+G + V + + + + R + + EQ +P + + + L+ Sbjct: 64 LGVGRLLLVCSERVEKGYLSSPKLSRENIEKQLQTGLEQGVSTRVPEVQVFASWQALMVF 123 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 + + T S+ +K+ V + IGPEGG+ +E E L S Sbjct: 124 LRRSR----SPCTFHSQQ-KDKIMQAHSGGRVLVAIGPEGGWIDQEVEELRETQGFEFFS 178 Query: 219 LGPRILRSDTAAVAAMA 235 LG R+LR +TA V+ +A Sbjct: 179 LGDRVLRCETAVVSVIA 195 >gi|203283988|ref|YP_002221728.1| hypothetical protein BDU_66 [Borrelia duttonii Ly] gi|201083431|gb|ACH93022.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 239 Score = 80.3 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 25/236 (10%) Query: 22 GKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + + ++ +L++K D ++ G++ + I + + FK ++ K Sbjct: 15 IVLNDPRVKHITEILKLKNNDTFKFGII--GEEHIYSC-IYHKDVRLFFKKNHKISKSNK 71 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133 + ++ + I+ +IQ +G+ I ++ + Y I Sbjct: 72 LTKIKVVIGFIRPIAAKRIIQHLGSIGISEIIFFNALLSEKSYSHSKLFREKEYEKYLIK 131 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIA-HIP 188 A Q I +P I L +L+N N +I+ NS KL + Sbjct: 132 GAMQGGITYIPKIKIFNNLIEVLENIKDNNFNTTKILL------ERNSKNKLIDLNIKTE 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVT-PLSLGPRILRSDTAAVAAMALVQAICGD 243 NV ++IGPE G+ ++E + F T +S P IL+++TA + A ++ + D Sbjct: 186 NVVVIIGPERGFITKETNLIKKYNFNTYNIS--PNILKTETATIVASTIITSKIND 239 >gi|221482899|gb|EEE21230.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 232 Score = 80.3 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 10/137 (7%) Query: 104 MGMGAIRPVITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 +G+G + V + + + + R + + EQ +P + + + L+ Sbjct: 64 LGVGRLLLVCSERVEKGYLSSPKLSRENIEKQLQTGLEQGVSTRVPEVQVFASWQALMVF 123 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 + + T S+ + + A + V + IGPEGG+ +E E L S Sbjct: 124 LRRSR----SPCTFHSQQKDQIMQAHS-GGRVLVAIGPEGGWIDQEVEELRETQGFEFFS 178 Query: 219 LGPRILRSDTAAVAAMA 235 LG R+LR +TA V+ +A Sbjct: 179 LGDRVLRCETAVVSVIA 195 >gi|309799315|ref|ZP_07693561.1| YqeU [Streptococcus infantis SK1302] gi|308117055|gb|EFO54485.1| YqeU [Streptococcus infantis SK1302] Length = 55 Score = 79.9 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + GPEGG E E+ + V LGPRILR++TA + ++ + + Sbjct: 2 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYTLSALSVLL 51 >gi|159490624|ref|XP_001703273.1| hypothetical protein CHLREDRAFT_205517 [Chlamydomonas reinhardtii] gi|158280197|gb|EDP05955.1| hypothetical protein CHLREDRAFT_205517 [Chlamydomonas reinhardtii] Length = 425 Score = 79.6 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 58/174 (33%) Query: 41 GDNILLFNGKDGEWLSKISYVGKSIRFK---------------------------VEYQS 73 GD + L +G+ + ++ K + Sbjct: 82 GDRVELCDGRGNVAVGVVTGTDKQRVWVSAHMILGLTTRPEDGAAGPTGHVSTEGAASHQ 141 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----------- 122 R + + + +K R +++++K+ E+G + P++T +Q Sbjct: 142 RWSGPRWVLAVACTTLKGGRAEWLVEKATELGAFMLVPLVTERSQAGGKAKFRTSRSGGG 201 Query: 123 --------------------NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 R+ I+A +Q + PPT L LL Sbjct: 202 GGGGGSDLDWGSDGGGGDDYQPGRLERVAIAATKQSLRPHALALVPPTPLADLL 255 Score = 69.5 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 + +GPEG + E L P+ LG LR++TAA+ ++ Sbjct: 376 VLFVGPEGDFTPAELAALVEAG-AQPVGLGVNRLRTETAAIGLLSA 420 >gi|320538483|ref|ZP_08038346.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] gi|320144654|gb|EFW36407.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421] Length = 249 Score = 79.6 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 24/222 (10%) Query: 31 YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 ++ +L++ D+ + +G+ G ++I + + + + I Sbjct: 27 HIKKILKLGVHDSFKAGIIDGEKGF--AEIIRFDEKELTARFKPNEKGLALAPITLILGF 84 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQCDILTL 143 + +L +++ +G+ + T Y Q+ +R I Q + Sbjct: 85 PRPIQLRRILRDISGLGIAELWLTGTVLGEKSYMQSELAQESEIRRLLIDGCSQAGQTII 144 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL--------IG 195 P + +L L K + + L + ++++ IG Sbjct: 145 PKVSGFDSLRSLFKTKRAEVS------AKNKKLLFDVLKTSTALSDISVFDTSDFLLAIG 198 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 E G+ EE+E + F T + +G RILR++TA AA A + Sbjct: 199 SERGWTEEERELFYEQNF-TAVGMGARILRTETAVCAACAAI 239 >gi|203287531|ref|YP_002222546.1| hypothetical protein BRE_65 [Borrelia recurrentis A1] gi|201084751|gb|ACH94325.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 239 Score = 79.6 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 25/236 (10%) Query: 22 GKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + + ++ +L++K D ++ G++ + I + + FK ++ K Sbjct: 15 IVLNDPRVKHITEILKLKNNDTFKFGII--GEEYIYSC-IYHKDVRLFFKKNHKISKSNK 71 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133 + V+ + I+ +IQ +G+ I + ++ + Y I Sbjct: 72 LTKVKVVIGFIRPIAAKRIIQHLGSIGISEIIFFNSLLSEKSYSHSKLFREKEYEKYLIK 131 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIA-HIP 188 A Q I +P I L +L+N + +I+ NS KL + Sbjct: 132 GAMQGGITYIPKIKIFNNLIEVLENIKDDNFNTTKILL------ERNSKNKLIDLNIKTE 185 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVT-PLSLGPRILRSDTAAVAAMALVQAICGD 243 NV ++IGPE G+ ++E + F T +S P IL+++TA + A ++ + D Sbjct: 186 NVVVIIGPERGFITKETNLITKYNFNTYNIS--PNILKTETATIVASTIITSKMND 239 >gi|46902|emb|CAA48688.1| unnamed protein product [Streptomyces coelicolor A3(2)] Length = 111 Score = 79.2 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY- 71 L + G + + V R++ G++++L +G+ + R V Sbjct: 13 PQDLPAG-EYVLDGPEGRHAVSVKRLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVP 71 Query: 72 --QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 +Q + + + K +R + ++ E+G+ AI Sbjct: 72 GGVREEPAEQPRITVVQALPKGDRGELAVETMTEVGVDAI 111 >gi|327478995|gb|AEA82305.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM 4166] Length = 235 Score = 79.2 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 16/218 (7%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 ++ V R++ +++ + G+ ++ + + + + V + + Sbjct: 26 HMRDVHRVEVNESLRV--GRLGGQMGSGRLLRLDATEAELQVSFDQPPPAKLPVTLLLAL 83 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTL 143 + L ++Q MG+ + + + + + + +R I EQ L Sbjct: 84 PRPKMLRRVLQTVAAMGVPRLVLLNSYRVEKSFWQTPFLEPAAIREQLILGLEQARDTVL 143 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + + +++ + A+ V + IGPEGG+ Sbjct: 144 PEVIIEKRFKPFVEDRLPQLAAGTCGLVGHPGDFPTCPRAVGGP--VTLAIGPEGGWIPY 201 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E + + P+ LG RILR +TA ++ + A Sbjct: 202 EVEKFTAAG-LQPVQLGERILRVETA----VSALLARL 234 >gi|257454846|ref|ZP_05620097.1| RNA methyltransferase, RsmE family [Enhydrobacter aerosaccus SK60] gi|257447779|gb|EEV22771.1| RNA methyltransferase, RsmE family [Enhydrobacter aerosaccus SK60] Length = 238 Score = 79.2 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 26/223 (11%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 +L VL++ GD + + + +S + SI + + + + + I + Sbjct: 24 HLKQVLKVTLGDTVKVGIKNGHLGTAVVSNIHDSSIELSQIHCTIAPPAKLPLTVILAIP 83 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFI 146 + L + MG+ I V + ++ +++ + ++ Y +Q + Sbjct: 84 RPKVLRRLFLDMTAMGVQHIILVNSYRSEKSYWQTPFLTQLDNYIHEGLQQA----CDTV 139 Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-------ILIGPEGG 199 P +L+ LK + + G + L +A V ++IG EGG Sbjct: 140 SPTVSLKKRLKPFVEDELPAL---IAGKQAILTHPYANEQFTQVWDNALPHVLVIGAEGG 196 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 + E E + +G RILR++ A V +CG Sbjct: 197 WIDYEVELFKTAG-CQAAHIGNRILRTENA-------VSVLCG 231 >gi|15639026|ref|NP_218472.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum str. Nichols] gi|189025266|ref|YP_001933038.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp. pallidum SS14] gi|8928461|sp|O83075|RSME_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase E; AltName: Full=16S rRNA m3U1498 methyltransferase gi|3322287|gb|AAC65027.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017841|gb|ACD70459.1| hypothetical protein TPASS_0032 [Treponema pallidum subsp. pallidum SS14] gi|291059447|gb|ADD72182.1| ribosomal RNA small subunit methyltransferase E [Treponema pallidum subsp. pallidum str. Chicago] Length = 266 Score = 79.2 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 23/213 (10%) Query: 31 YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFS 87 ++ VL++ G + NG G ++IS + V E + + Sbjct: 27 HIKRVLKLSAGACFKAGIINGVKG--SARISLATEKYLVAVFEKLEYEDCALFPLHLVIG 84 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQCDILT 142 + +L +++ +G+ +I V T + ++ + M+++ TY I EQ Sbjct: 85 FPRPIQLRRILRDVSSLGISSIHLVGTELGERSYLDSGLAHMEKMHTYLIRGLEQAGGTK 144 Query: 143 LPFIYPPTTLEFLLKNWDHNC------QIVFADETCGSENSLEKLHAIAHIPNV-AILIG 195 LP I ++ H +++ ++N+L L + A +V I IG Sbjct: 145 LPLITVSESVRTFCSQHTHILGDSTHQKLIL-----DTKNTLTDLGSAALRGDVLWIAIG 199 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 E G+ E+ ++ F + +G R LR++T Sbjct: 200 SERGWTESERLLFSAMGF-RAVDMGRRTLRTET 231 >gi|581636|emb|CAA48689.1| unnamed protein product [Streptomyces coelicolor A3(2)] Length = 107 Score = 79.2 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY- 71 L + G + + V R++ G++++L +G+ + R V Sbjct: 9 PQDLPAG-EYVLDGPEGRHAVSVKRLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVP 67 Query: 72 --QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 +Q + + + K +R + ++ E+G+ AI Sbjct: 68 GGVREEPAEQPRITVVQALPKGDRGELAVETMTEVGVDAI 107 >gi|169634747|ref|YP_001708483.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii SDF] gi|169153539|emb|CAP02707.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 235 Score = 78.8 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 74/200 (37%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPIREEPLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ N ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQVDNYFTLGLEQAGDTIVPEIQLYKRFKPFVEDILPN--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L +SLG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|146280727|ref|YP_001170880.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri A1501] gi|145568932|gb|ABP78038.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 235 Score = 78.8 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 16/218 (7%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88 ++ V R++ +++ + G+ ++ + + + + V + + Sbjct: 26 HMRDVHRVEVNESLRV--GRLGGQMGSGRLLRLDATEAELQVSFDQPPPAKLPVTLLLAL 83 Query: 89 IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTL 143 + L ++Q MG+ + + + + + + +R I EQ L Sbjct: 84 PRPKMLRRVLQTVAAMGVPRLVLLNSYRVEKSFWQTPFLEPAAIREQLILGLEQARDTVL 143 Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 P + + +++ + A+ V + IGPEGG+ Sbjct: 144 PEVIIEKRFKPFVEDRLPQLAAGTCGLVGHPGDFPACPRAVGGA--VTLAIGPEGGWIPY 201 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E E + + P+ LG RILR +TA ++ + A Sbjct: 202 EVEKFTAAG-LQPVQLGERILRVETA----VSALLARL 234 >gi|229577085|ref|YP_001086303.2| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii ATCC 17978] gi|193078652|gb|ABO13701.2| hypothetical protein A1S_3312 [Acinetobacter baumannii ATCC 17978] Length = 235 Score = 78.0 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 73/200 (36%), Gaps = 14/200 (7%) Query: 50 KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109 ++++I + + + V I + + L +I SV +G+ I Sbjct: 45 NGARYITEIVSMNEHEVRIRPICEELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104 Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166 + + +++ ++ EQ +P I + +++ + ++ Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162 Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 + + + +I + +++GPEGG+ E + L ++LG RILR Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMNLGNRILR 221 Query: 226 SDTAAVAAMALVQAICGDWY 245 ++T + I G + Sbjct: 222 TET-------SISYILGRLF 234 >gi|254447010|ref|ZP_05060477.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium HTCC5015] gi|198263149|gb|EDY87427.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium HTCC5015] Length = 239 Score = 78.0 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 31/227 (13%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + + S ++ ++ V R + GD + L NG G + + + Sbjct: 16 QRIRLSDRRFEHITKVHRAQVGDRLKLGVINGSIG--SAIVEDLQSHSVELSYALDTPPP 73 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA-- 135 + I + + L +Q +G I + T + ++ ++ + +A Sbjct: 74 PALPLTLILALPRPKVLRRTLQNLSSLGAKHIILINTWRVEKSY-----WQSPLLESASI 128 Query: 136 --------EQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEKLH 182 EQ +P I + +++ + ++V + G+ L Sbjct: 129 EHSLQLGLEQAVDTIMPTISQRKRFKPFVEDELGALAKESVKLVAHPK--GNAPCPMNLG 186 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 A A + IGPEGG+ E E L S+ F +++G RIL +TA Sbjct: 187 AQAS----TLAIGPEGGFIPYEIEKLESIGF-QAVNMGQRILTVETA 228 >gi|78184910|ref|YP_377345.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9902] gi|78169204|gb|ABB26301.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 242 Score = 78.0 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 18/234 (7%) Query: 18 IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 ++ ++ VL+ GD + + + +++ + + Sbjct: 14 DDHSVLLCDERAIHICDVLKSTVGDQLRVGLRDGLQGQGEVTSIQNGVVHLTVDLHDPSP 73 Query: 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTI 132 + + + + L + + E G+ + + + + +++ D + + Sbjct: 74 PRHRFDLVLALPRPKMLRRIFRSIAEFGVQNLYLINSARVEKSYWQSPLLKADAIDQALV 133 Query: 133 SAAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188 + E+ P ++ E L AD L + P Sbjct: 134 AGMERSRDTIAPRVHLCPRFRPFMEDRLTQICAGRPCWIADMEAPV-----ALSDCSSTP 188 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 V ++IGPEGG+ E + ++LG R+L DTA +A QA+ G Sbjct: 189 AV-VMIGPEGGFVPFEIQLAEKT-VAQRVNLGTRVLSVDTALTTVLA--QALPG 238 >gi|167036058|ref|YP_001671289.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1] gi|166862546|gb|ABZ00954.1| protein of unknown function DUF558 [Pseudomonas putida GB-1] Length = 235 Score = 77.6 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 12/208 (5%) Query: 37 RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDY 96 R+ GDN+ + + + + K + + + I + + L Sbjct: 32 RVAVGDNLRVGRINGLMGKATVLRLEKHEAELEVAFDQPPPAKLPLTLILAVPRPKMLRR 91 Query: 97 MIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPPTT 151 + Q +G+ + V + + + + + +R I EQ LP + Sbjct: 92 LFQTVATLGVSRLILVNSYKVEKSFWQTPFLQPESIRENLILGLEQARDTVLPEVIIEKR 151 Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGGYHSEEKETLH 209 + ++ + A T G A V + IGPEGG+ E E L Sbjct: 152 FKPFVE----DRLPAIATGTLGLVGHPGPYPACPRAVEQAVTLAIGPEGGWIPYEIELLG 207 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237 + P+ LG RILR +TA A ++ + Sbjct: 208 KAG-LAPVQLGDRILRVETAVTALLSRI 234 >gi|330720102|gb|EGG98513.1| hypothetical protein TIGR00046 [gamma proteobacterium IMCC2047] Length = 236 Score = 77.6 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 8/222 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + S ++ + V + GD + + +I+ + + Sbjct: 8 PQDFIDPQHARLSDARFKQILQVHGSQIGDQVRVGELNGLMGSGRITDLNEQAVTLAVQL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MD--RV 127 + + + + + + + + + E+G+ + + + + + + +D +V Sbjct: 68 DQQPPAKLPLTVVLALPRPKMIRRIFRSLAELGVEQLIVINSYKVEKSFWQSPALDPVKV 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R Y + +Q LP + + ++ D I+ + +L + Sbjct: 128 RQYLVDGLQQAKDTILPQVQFHKRFKPFVE--DELPNIIAGSRALIAHPALGEPCPHQLN 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + + +GPEGG+ E E L ++ F + LG RIL+ + A Sbjct: 186 ERITLAVGPEGGFIPYEVEKLQAIGF-EGVDLGERILKVENA 226 >gi|116072537|ref|ZP_01469804.1| hypothetical protein BL107_12136 [Synechococcus sp. BL107] gi|116065059|gb|EAU70818.1| hypothetical protein BL107_12136 [Synechococcus sp. BL107] Length = 242 Score = 76.5 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 14/219 (6%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90 ++ VL+ GD + + + +++ + S + + + + Sbjct: 27 HICDVLKSTVGDQLRVGLRDGLQGQGEVTSIQDGAVQLSVELHDSPPPRHHFDLVLALPR 86 Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTISAAEQCDILTLPF 145 L + + E G+ + + + + +++ +D + ++ E+ P Sbjct: 87 PKMLRRIFRAVAEFGVQNLYLINSARVEKSYWQSPLLQVDAIDQALVAGMERSRDTIAPR 146 Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILIGPEGGYHSE 203 ++ +++ + A C + +E A++ + ++IGPEGG+ Sbjct: 147 VHLCPRFRPFVED---QLIQICAGRPCWIAD-MEAPIALSDCSSTPAVVMIGPEGGFVPF 202 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 E + + ++LG RIL DTA +A QA+ G Sbjct: 203 EIQLAETT-IAQRINLGTRILSVDTALTTVLA--QALPG 238 >gi|226533423|ref|NP_001146141.1| hypothetical protein LOC100279709 [Zea mays] gi|219885933|gb|ACL53341.1| unknown [Zea mays] Length = 100 Score = 76.1 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 + P + LL + A + + L + + ++IGPEG + +E Sbjct: 1 MSLKSPIQIRHLLPVVSQSKLAFLA--SAEAPPFFSVLPESSIEQSGLLIIGPEGDFTAE 58 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E +L S P+ LGP LR +TA ++ ++ + + D Sbjct: 59 EVHSLKSAGAA-PVGLGPCRLRVETATISLLSALM-LWSD 96 >gi|88808326|ref|ZP_01123836.1| hypothetical protein WH7805_01512 [Synechococcus sp. WH 7805] gi|88787314|gb|EAR18471.1| hypothetical protein WH7805_01512 [Synechococcus sp. WH 7805] Length = 236 Score = 76.1 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 10/222 (4%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 + + S + ++ VLR ++GD + + I + + + Sbjct: 16 QRVRLSDRRAEHIRQVLRSQQGDTLRVGLLGGQLGTGWIEAIDANAVLMTVQLLDPPPAR 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-RTYTISA---- 134 + + + L +++ E G G + + + +++ + A Sbjct: 76 HRFDLVLALPRPKMLRKILRTVAEFGAGHLHLIHSARVDRSYWQSPLLSEAKVDEALRMG 135 Query: 135 AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193 E+ +P ++ +++ CQ L A+A P V ++ Sbjct: 136 MERSRDTLIPQVHRHRLFRPFVEDRLPGICQGRPCWIAHQEAGL--GLSAVATQPAV-VM 192 Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 IGPEGG+ E E + + LG R L DTA +A Sbjct: 193 IGPEGGFVPFELELAERMG-AQRVHLGARTLSVDTALTTVLA 233 >gi|307719330|ref|YP_003874862.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM 6192] gi|306533055|gb|ADN02589.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM 6192] Length = 190 Score = 76.1 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 13/146 (8%) Query: 104 MGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 +G+ + R ++ + + + AEQ +P + +LE + Sbjct: 52 LGVERVVVFPARLSERSYLESTLWKGGEWERCLVEGAEQGVTTRVPEVVRVRSLEEGVGV 111 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 + V DE G +A + +GPE G+ EE+ L FV LS Sbjct: 112 CGEGVRYV-CDEAVGEGGR------VARAGRYVVAVGPERGWTEEERRVLAEEGFVR-LS 163 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 LGPR+LR++ A A+ V G W Sbjct: 164 LGPRMLRAEVACHVAVGRVAEGAGWW 189 >gi|148550095|ref|YP_001270197.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1] gi|148514153|gb|ABQ81013.1| protein of unknown function DUF558 [Pseudomonas putida F1] Length = 235 Score = 74.9 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 8/230 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ ++ + R+ GDN+ + + + + K Sbjct: 8 EADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMGKATVLRLEKHEAELEVAF 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q +G+ + + + + + + + + Sbjct: 68 DQQPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPESI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ I A Sbjct: 128 RENLILGLEQARDTVLPEVIIEKRFKPFVEDRLPT--IAAGTLGLVGHPGPYPACPRAVE 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A ++ + Sbjct: 186 QTVTLAIGPEGGWIPYEIDLLGKAG-LAPVQLGDRILRVETAVTALLSRI 234 >gi|261886253|ref|ZP_06010292.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 138 Score = 74.2 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 3/137 (2%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69 F+ + GD + YL R GD I + N KDG ++ +I + ++ Sbjct: 3 FLYDENAKNDIPEIKGDSFKYL-KARRQNVGDRIDIRNLKDGYSYIYEIINSERKATCEL 61 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVR 128 ++S ++ SD+ ++ + + ++ + E+G+ I V T ++Q + DR R Sbjct: 62 VFKSLPKSLDSDLVLAWAVVDPSVIEKTLPSLNELGVKKIIFVYTDFSQRNIKLDFDRFR 121 Query: 129 TYTISAAEQCDILTLPF 145 I +++QC ++ Sbjct: 122 RILIGSSQQCGRNSIIE 138 >gi|170719632|ref|YP_001747320.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619] gi|169757635|gb|ACA70951.1| protein of unknown function DUF558 [Pseudomonas putida W619] Length = 235 Score = 74.2 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 22/237 (9%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVE 70 + + + ++ ++ + R+ GD++ + G+ + + + + Sbjct: 8 EADFVSADRVVLADRRFTHMQEIHRVVVGDSLRV--GRINGLMGTATVVRLAQHEAELEV 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMD 125 + + + + + + L + Q +G+ + V + + + + N + Sbjct: 66 GFDQPPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVQRLILVNSYKVEKSFWQTPFLNPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEK 180 +R I EQ LP + + +++ D +V G Sbjct: 126 CIRDNLILGLEQARDTVLPEVVIEKRFKPFVEDRLPAIVDGTLGLV------GHPGPYPA 179 Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E E L + P+ LG RILR +TA A ++ + Sbjct: 180 CPRAVEGP-VTLAIGPEGGWIPYEVELLGKAG-LAPVQLGDRILRVETAVTALLSRI 234 >gi|219112567|ref|XP_002178035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410920|gb|EEC50849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 333 Score = 74.2 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 101/290 (34%), Gaps = 57/290 (19%) Query: 6 HLKRL--------FVDFPLCIKTQGKASGDQYH--YLAHVLRMKEGDNI----------- 44 L R + D L D + + + +L ++ G+ I Sbjct: 46 RLNRFLFDTSEVKYTDTELP---SITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQ 102 Query: 45 -LLFNGKDGEWLSKISYVGKSIRF------------KVEYQSRSQTKQSDVQYIFSPIKT 91 LL + +W+ + V K+ Q+ ++ V I + + Sbjct: 103 GLLTDDATVQWIPE-GKVKKAEPLGNGNPPGSLHIHLNGLQAPAEQLVPSVSLILALPRP 161 Query: 92 NRLDYMIQKSVEMGMGAIRPVITR------YTQNTHYNMDRVRTYTISAAEQCDILTLPF 145 +L M+ +MG+ + + + + N + +R I Q + LP Sbjct: 162 LQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQ 221 Query: 146 IYPPTTLEFLLKNW--------DHNCQIVFADETCGSENSLEKLHAIA---HIPNVAILI 194 ++ L L N + I T SL+K+ + + + + Sbjct: 222 LHIVRNLRDFLTNEVDEIFPKNQYARAIAHPQRTSDPMGSLKKMKQVEFPVKSSRLVVAV 281 Query: 195 GPEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 GPEGG+ +E + F +++G R+LRSD A V+ ++L IC D Sbjct: 282 GPEGGWEEPDELDRFRDCGFQQ-ITMGARVLRSDCAVVSLLSLAHDICAD 330 >gi|325274876|ref|ZP_08140889.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51] gi|324099993|gb|EGB97826.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51] Length = 235 Score = 73.8 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 16/210 (7%) Query: 37 RMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 R+ GD + + NG G + + + + + + + + + L Sbjct: 32 RVAVGDQLRVGRVNGLMG--KATVLRLAPHQAELEVAFDQQPPAKLPLTLVLAVPRPKML 89 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPP 149 + Q +G+ + + + + + + + +R I EQ LP + Sbjct: 90 RRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPESIRDNLILGLEQARDTVLPEVIIE 149 Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGGYHSEEKET 207 + ++ + A T G A V + IGPEGG+ E + Sbjct: 150 KRFKPFVE----DRLPAIAAGTLGLVGHPGPYPACPRAVDQPVTLAIGPEGGWIPYEIDL 205 Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + P+ LG RILR +TA A ++ + Sbjct: 206 LGKAG-LAPVQLGERILRVETAVTALLSRI 234 >gi|104783999|ref|YP_610497.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila L48] gi|95112986|emb|CAK17714.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 235 Score = 73.8 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 16/234 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVE 70 + + + ++ ++ + R+ GD++ + G+ +++ + Sbjct: 8 EADFVSADRVILADRRFTHMQEIHRVAVGDSLRV--GRIGGLMGKAEVIRLEGHEAELRV 65 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 ++ + + + + + L + Q +G+ + V + + + + + Sbjct: 66 AFDQAPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILVNSYKVEKSFWQTPFLQPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP + + ++ + A+ T G A Sbjct: 126 AIRENLILGLEQARDTVLPEVIIEKRFKPFVE----DRLPAIAEGTLGLVGHPGPYPACP 181 Query: 186 HI--PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E E L + P+ LG RILR +TA A ++ + Sbjct: 182 RAVEGPVTLAIGPEGGWIPYEVELLGKAG-LAPVQLGDRILRVETAVTALLSRI 234 >gi|302188582|ref|ZP_07265255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae 642] Length = 235 Score = 73.8 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD + + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDTVRVGRVNGLLGNAELLRLEAHEAELRVEL 67 Query: 72 QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS + K R + Q MG+ + + + + + + D Sbjct: 68 QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPD 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + ++ D QI A Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLGLVGHPGDFPACPRA 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 184 VTQSVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|297185080|gb|ADI21189.1| uncharacterized protein conserved in bacteria [uncultured gamma proteobacterium EB750_07C09] Length = 70 Score = 73.4 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 7/56 (12%) Query: 91 TNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAAEQCD 139 +R+D+++QKS E+G+ I P++T ++ +++ + + SA EQC Sbjct: 8 NDRMDFVVQKSTELGIKRITPLLTEFSFVKLNAXKHSXKKKEHWEKISQSACEQCG 63 >gi|330971760|gb|EGH71826.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aceris str. M302273PT] Length = 235 Score = 73.4 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAELLRLELHEAELRVEL 67 Query: 72 QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS + K R + Q MG+ + + + + + + + Sbjct: 68 QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + ++ D QI A Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLALVGHPGDFPACPRA 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 184 VTQPVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|26991695|ref|NP_747120.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida KT2440] gi|24986796|gb|AAN70584.1|AE016701_4 conserved hypothetical protein TIGR00046 [Pseudomonas putida KT2440] Length = 235 Score = 73.0 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ ++ + R+ GDN+ + + + + K Sbjct: 8 EADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMGRATVLRLEKHEAELEVAF 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q +G+ + + + + + + D + Sbjct: 68 DQQPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPDTI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ G+ + Sbjct: 128 RENLILGLEQARDTVLPEVIIEKRFKPFVEDR-------LPTIAAGTLGLVGHPGPYPAC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A ++ + Sbjct: 181 PRAVEQAVTLAIGPEGGWIPYEVDLLGKAG-LAPVQLGDRILRVETAVTALLSRI 234 >gi|24214764|ref|NP_712245.1| hypothetical protein LA_2064 [Leptospira interrogans serovar Lai str. 56601] gi|24195765|gb|AAN49263.1|AE011378_10 conserved hypothetical protein [Leptospira interrogans serovar Lai str. 56601] Length = 258 Score = 73.0 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 24/221 (10%) Query: 30 HYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIF 86 +++ ++L +EGD + L + G++ + + K+ + + + + +V + Sbjct: 27 NHICNILNKREGDRLKAGLIDTDLGQFF--LEKINKNQIVGIYKPILVPRPRFPEVHILM 84 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDIL 141 + + + ++Q + G+ +I I++ ++ +N + + + + EQ + Sbjct: 85 AINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNI 144 Query: 142 TLPFI--YPPTTLEFLL----KNWDHNCQIVFADETCGSENSLEKLHAI-------AHIP 188 LP + +E +L K D + + + ++ I + P Sbjct: 145 FLPKVCFDFQNQIENILIKKLKELDFTFRFILDRKGFTFTQVFKEKKKIDSNFGMYSKTP 204 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 V +IGPE G+ E F L+L RILR++TA Sbjct: 205 RVLAVIGPESGFIPNEIYFWKRFGF-KKLNLSDRILRTETA 244 >gi|313500995|gb|ADR62361.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 235 Score = 73.0 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ ++ + R+ GDN+ + + + + K Sbjct: 8 EADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMGKATVLRLEKHEAELEVAF 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q +G+ + + + + + + D + Sbjct: 68 DQQPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPDTI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP + + +++ G+ + Sbjct: 128 RENLILGLEQARDTVLPEVIIEKRFKPFVEDR-------LPTIAAGTLGLVGHPGPYPTC 180 Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPEGG+ E + L + P+ LG RILR +TA A ++ + Sbjct: 181 PRAVEQAVTLAIGPEGGWIPYEIDLLGKAG-LAPVQLGDRILRVETAVTALLSRI 234 >gi|324998265|ref|ZP_08119377.1| hypothetical protein PseP1_05833 [Pseudonocardia sp. P1] Length = 139 Score = 73.0 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 D + +V + + + V + +GPEGG E L V P+ Sbjct: 57 ADADVALVLHESAGTGLADVP----LPDAGEVLLAVGPEGGVDDHELALLADAGAV-PVR 111 Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244 +GP +LR+ TAA A+ + G W Sbjct: 112 MGPEVLRASTAACVALGALAVRTGRW 137 >gi|66043648|ref|YP_233489.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae B728a] gi|63254355|gb|AAY35451.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv. syringae B728a] Length = 235 Score = 72.6 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHEAELRVEL 67 Query: 72 QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS + K R + Q MG+ + + + + + + + Sbjct: 68 QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + ++ D QI A Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLALVGHPGDFPACPRA 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 184 VTQPVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|330977177|gb|EGH77135.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 235 Score = 72.6 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAELLRLEAHEAELRVEL 67 Query: 72 QSRSQTKQSDVQYIFSPIKTNRL-DYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS K + P ++ + Q MG+ + + + + + + + Sbjct: 68 QSAPPAKLPLTLLLALPR--PKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + ++ D QI A Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALETLGLVGHPGDFPACPRA 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 184 ATEQVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|304310394|ref|YP_003809992.1| hypothetical protein HDN1F_07500 [gamma proteobacterium HdN1] gi|301796127|emb|CBL44333.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 243 Score = 72.2 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 17/151 (11%) Query: 97 MIQKSVEMGMGAIRPVITRYTQNTHYNMDRV--RTYTIS---AAEQCDILTLPFIYPPTT 151 ++Q MG+ ++ + T + +++ + EQ LP + T Sbjct: 98 ILQTVAAMGVKSVYLINTYRVEKSYWQSPFLLPEAIFQELLLGLEQGVDTQLPQVQLRTR 157 Query: 152 L-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 + L +V + A+ +V + IGPEGG+ E E Sbjct: 158 FKPFVEDELPALLQGKLGLVAHP-----TGEAHDIRALGEQASV-LAIGPEGGFIPYEIE 211 Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 L + F LSLGPRILR +TA + + Sbjct: 212 KLQAAGF-RSLSLGPRILRVETAIPVLLTRL 241 >gi|289672001|ref|ZP_06492891.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. syringae FF5] Length = 235 Score = 72.2 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGNAELLRLDPHEAELRVEL 67 Query: 72 QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS + K R + Q MG+ + + + + + + + Sbjct: 68 QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + ++ D QI A Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLGLVGHPGDFPACPRA 183 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 184 ATEQVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|330899251|gb|EGH30670.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. japonica str. M301072PT] gi|330938660|gb|EGH42225.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. pisi str. 1704B] Length = 235 Score = 71.9 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGNAELLRLDPHEAELRVEL 67 Query: 72 QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS + K R + Q MG+ + + + + + + + Sbjct: 68 QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + +++ + + AI Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLGLVGHPGDFPACPRAIT 185 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 186 DQ--VTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|308801857|ref|XP_003078242.1| unnamed protein product [Ostreococcus tauri] gi|116056693|emb|CAL52982.1| unnamed protein product [Ostreococcus tauri] Length = 426 Score = 71.9 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 58/278 (20%) Query: 9 RLFVDFPLCIKTQGKASGDQYH--YLAHVL--------RMKEGDN------ILLFNGKDG 52 R+ + + +G + VL R D I+ +G DG Sbjct: 158 RILFRADEVDGDEARVAGLDARARHAREVLGASVGSTIRAGVIDEGRCSGTIIADDGDDG 217 Query: 53 EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112 E++ +S S R + + ++ +++P+ MG+G + Sbjct: 218 EFIVALSAREGSTRAPRVDLLLATPRPKVLRRMWAPLAA------------MGVGRVFLA 265 Query: 113 ITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFI-----YPPT------------ 150 + ++R +R + EQ +P I PP Sbjct: 266 NASKVERYYFDSKALERETIREEILRGLEQAGDYIVPQIGVAKRLPPIIDRLAGKLEGND 325 Query: 151 ---TLEFLL---KNWDHN-CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203 E+LL + W + ++ A + + L + V I IGPEGG+ Sbjct: 326 MTNGFEWLLGGDRAWTLDVDVLLLAHPGESRTSVADALAGVDENSRVLIAIGPEGGWTEY 385 Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 E + L F ++LG R L +D A ++ ++ V+ Sbjct: 386 ELDMLEHAGFRK-IALGTRTLTTDVACISLISAVRERL 422 >gi|330951280|gb|EGH51540.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit 7] Length = 235 Score = 71.5 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAELLRLEPHEAELRVEL 67 Query: 72 QSRSQTKQSDVQYIFSPIKTNRL-DYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS K + P ++ + Q MG+ + + + + + + + Sbjct: 68 QSAPPAKLPLTLLLALPR--PKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + +++ + + A+ Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLGLVGHPGDFPACPRAVT 185 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 186 EQ--VTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|45657713|ref|YP_001799.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600953|gb|AAS70436.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 257 Score = 71.5 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 25/221 (11%) Query: 30 HYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIF 86 +++ ++L +EGD + L + G++ + + K+ + + + + +V + Sbjct: 27 NHICNILNKREGDRLKAGLIDTDLGQFF--LEKINKNQIVGIYKPILVPRPRFPEVHILM 84 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDIL 141 + + + ++Q + G+ +I I++ ++ +N + + + + EQ + Sbjct: 85 AINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNI 144 Query: 142 TLPFI--YPPTTLEFLL----KNWDHNCQIVFADETCGSENSLEKLHAI-------AHIP 188 LP + +E +L K D + + D + + K I + P Sbjct: 145 FLPKVCFDFQNQIENILIKKLKELDFTFRFIL-DRKGFTFTQVFKEKKIDSNFGMYSKTP 203 Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 V +IGPE G+ E F L+L RILR++TA Sbjct: 204 RVLAVIGPESGFIPNEIYFWKRFGF-KKLNLSDRILRTETA 243 >gi|269214516|ref|ZP_06158620.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970] gi|269209685|gb|EEZ76140.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970] Length = 52 Score = 71.1 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 ++GPEGG+ +E++ F ++LG RILR++TAA+AA+A +Q + GD+ Sbjct: 1 MVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 51 >gi|289624222|ref|ZP_06457176.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647404|ref|ZP_06478747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 2250] gi|298485111|ref|ZP_07003207.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160363|gb|EFI01388.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330865688|gb|EGH00397.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 235 Score = 70.3 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 12/232 (5%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 + + + ++ V R + GD++ + +++ + +VE Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGNAELLRLEPHEAELRVEL 67 Query: 72 QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125 QS + K R + Q MG+ + + + + + + + Sbjct: 68 QSAPPTKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 +R I EQ LP I + +++ + + A+ Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLGLVGHPGDFPACPRAVT 185 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 186 EQ--VTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|51244547|ref|YP_064431.1| hypothetical protein DP0695 [Desulfotalea psychrophila LSv54] gi|50875584|emb|CAG35424.1| hypothetical protein DP0695 [Desulfotalea psychrophila LSv54] Length = 96 Score = 69.5 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 33/66 (50%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66 ++R F + S ++ +++ VLR++ G+ + L +G+ + +I VG ++ Sbjct: 1 MRRFFFSRQQEEEGLVVLSPEESRHISRVLRLEPGEVVELLDGRGSVFGGEIVAVGAEVQ 60 Query: 67 FKVEYQ 72 ++ + Sbjct: 61 VRITAE 66 >gi|116075531|ref|ZP_01472791.1| hypothetical protein RS9916_28264 [Synechococcus sp. RS9916] gi|116067728|gb|EAU73482.1| hypothetical protein RS9916_28264 [Synechococcus sp. RS9916] Length = 240 Score = 68.8 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 71/225 (31%), Gaps = 10/225 (4%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 + + ++ L GD + + + ++ + + Sbjct: 15 DNVVTLTDHRADHILRHLGASVGDAVRVGQLGGKVGVGRLEAIDQGHVTLSVQLEADPPP 74 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTIS 133 + + + + L +++ E G+ + + + + +++ +V ++ Sbjct: 75 RHHFDIVLALPRPKMLRRILRTVAEFGVENLHLINSARVEKSYWQTPLLSAAKVDDALMA 134 Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAHIPNVAI 192 E+ P ++ +++ + A +C + A I + Sbjct: 135 GMERSSDTVAPRVHLHKRFRPFVED---QLVDLCAGRSCWIADMDAPMALAAQPINRAVV 191 Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 +IGPEGG+ E + LG R DTA +A V Sbjct: 192 MIGPEGGFVPFEIALAQKA-LAKRVHLGVRTFSVDTALTTVLAQV 235 >gi|219685331|ref|ZP_03540150.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498 methyltransferase 1) [Borrelia garinii Far04] gi|219673104|gb|EED30124.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498 methyltransferase 1) [Borrelia garinii Far04] Length = 98 Score = 68.8 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202 +P I L+ LK F + ++S +KL I + N I++GPE G+ Sbjct: 1 MPKIKIMKNLKESLKYIKQE---NFEIKILLEKDSKKKLIDIEQVNNATIIVGPERGFTE 57 Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 +EK+ + F + S+ ILR++TA + A +++ A Sbjct: 58 KEKQLIMQYNF-SSCSISSNILRTETAIITA-SIITA 92 >gi|213969416|ref|ZP_03397553.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] gi|301386676|ref|ZP_07235094.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato Max13] gi|302063217|ref|ZP_07254758.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato K40] gi|302132114|ref|ZP_07258104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925787|gb|EEB59345.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato T1] gi|331016059|gb|EGH96115.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 235 Score = 68.8 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 8/230 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R + GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRVSL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q MG+ + + + + + + + + Sbjct: 68 TAEPPAKLPLTLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP I + +++ + I A Sbjct: 128 REQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACPRAVT 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 186 QPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|28872270|ref|NP_794889.1| hypothetical protein PSPTO_5158 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855524|gb|AAO58584.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 235 Score = 68.4 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 16/234 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGK-DGEWLSKISYVGKSIRFKV 69 + + + ++ V R + GD++ + NG L ++ +R + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRVSL 67 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDY-MIQKSVEMGMGAIRPVITRYTQNTHYNM---- 124 + ++ + + + P ++ + Q MG+ + + + + + + Sbjct: 68 TAEPPAKLPLTLLLALPRP----KMLLRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLE 123 Query: 125 -DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183 + +R I EQ LP I + +++ + I Sbjct: 124 PEAIREQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACP 181 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 182 RAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|330962012|gb|EGH62272.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 235 Score = 68.4 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGK-DGEWLSKISYVGKSIRFKV 69 + + + ++ V R + GD++ + NG L ++ +R + Sbjct: 8 EADFIAADRVILRDRRLKHMQEVHRAEIGDSVRVGRINGLLGNAELLRLEAHEAELRVVL 67 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124 + + ++ + + + P R+ + + MG+ + + + + + + Sbjct: 68 DAEPPAKLPLTLLLALPRPKMLRRVFQTV--AT-MGVPRVVVLNSYRVEKSFWQTPFLEP 124 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 +R I EQ LP I + +++ + A+ Sbjct: 125 AAIREQLILGLEQARDSVLPDIVIEKRFKPFVEDRLPQLAADTLGLVGHPGDFPACPRAV 184 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 185 TGP--VTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|330964770|gb|EGH65030.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 235 Score = 68.0 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGK-DGEWLSKISYVGKSIRFKV 69 + + + ++ V R + GD++ + NG L ++ +R + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRVSL 67 Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124 + ++ + + + P R+ I + MG+ + + + + + + Sbjct: 68 NAEPPAKLPLTLLLALPRPKMLRRVFQTI--AT-MGVPKVILLNSYRVEKSFWQTPFLEP 124 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184 + +R I EQ LP I + +++ + I Sbjct: 125 EAIREQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACPR 182 Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 183 AVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|330877927|gb|EGH12076.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 235 Score = 68.0 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 8/230 (3%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 + + + ++ V R + GD++ + +++ + Sbjct: 8 EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRASL 67 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127 + + + + + + L + Q MG+ + + + + + + + + Sbjct: 68 TAEPPAKLPLTLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187 R I EQ LP I + +++ + I A Sbjct: 128 REQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACPRAVT 185 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 V + IGPEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 186 QPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234 >gi|325114321|emb|CBZ49878.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 500 Score = 68.0 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 + +++ + S+ K+HA + V + IGPEGG+ +E L SLG Sbjct: 300 SRRLIAHPGVDATLGSI-KMHAHSRG-RVLVAIGPEGGWLDQEVLELSETQGFEFFSLGD 357 Query: 222 RILRSDTAAVAAMALVQAICGD 243 R+LR +TA V+ +A + + D Sbjct: 358 RVLRCETAVVSVIAQLNMLLQD 379 Score = 55.7 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 16/150 (10%) Query: 22 GKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVG----KSIRFKVE---YQ 72 + VL+++ G + +FNG G K+ + ++ ++E + Sbjct: 41 VDLPSAAAQHCLSVLKVQVGSTVKVGVFNG--GVCTGKVVAINGQSPACVQVQLERDIAK 98 Query: 73 SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN---THYNMDR--V 127 + S + + + + LD ++Q S +G+G + V + + + + R + Sbjct: 99 EACASPDSLIDLLLAIPRPKTLDKILQVSATLGVGRVLLVCSERVEKGYLSSPKLSRENI 158 Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 + EQ +P + + + L+ Sbjct: 159 EKQLQTGLEQGVSTRVPEVQVFASWQALMA 188 >gi|226946565|ref|YP_002801638.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii DJ] gi|226721492|gb|ACO80663.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 235 Score = 68.0 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 28/218 (12%) Query: 35 VLRMKEGDNILL-----FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89 V R + GD++ + G+ + + + F ++ + Sbjct: 30 VHRAEAGDSLRVGRLGGAMGEGRLLRLEAAEAELQVVFDRPPPAKLPLTLLLALPRPKML 89 Query: 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLP 144 K ++Q MG+ + + + + + + +R + EQ LP Sbjct: 90 KR-----VLQTVAAMGVPRLVLLNSYRVEKSFWQTPFLEAQAIREQLLLGLEQARDTVLP 144 Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIGPEGG 199 + + +++ G+ L P V + IGPEGG Sbjct: 145 EVLVEKRFKPFVEDHLPQL-------AAGTLGLLGHPGDYPPCPRAVERPVTLAIGPEGG 197 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + E + L + + P+ LG RILR +TA A +A + Sbjct: 198 WIPYEVDKLQAAG-LAPVQLGERILRVETAVTALLARL 234 >gi|148242227|ref|YP_001227384.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. RCC307] gi|147850537|emb|CAK28031.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 236 Score = 68.0 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 78/222 (35%), Gaps = 8/222 (3%) Query: 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79 Q + G + ++ L+ G + + + ++I+ + + + Sbjct: 16 DQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDADAVVLSVALDQPPPPR 75 Query: 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTISA 134 + + + L + + + E G+G + + + + + + +V + Sbjct: 76 HRFDVVLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQTPLLKPAKVAEALQAG 135 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194 E+ P ++ ++ D + ++ A A + +++ Sbjct: 136 MERARDTIAPQVHLHQRFRPFVE--DELSALCAGRPCWITDQGAPLALASAPAGHAVVMV 193 Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 GPEGG+ E E S+ + LG R L DTA A +AL Sbjct: 194 GPEGGFVPFEIELACSV-VAQRVHLGERTLSVDTALTATLAL 234 >gi|152997764|ref|YP_001342599.1| 16S ribosomal RNA methyltransferase RsmE [Marinomonas sp. MWYL1] gi|150838688|gb|ABR72664.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1] Length = 239 Score = 67.2 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 20/222 (9%) Query: 19 KTQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76 + + Q +++ V++ + GD + + NGK GE + + + + Sbjct: 14 DGRYGLTERQQTHISKVIKAESGDVLRVGVLNGKIGEGVYESPSESQPGYIHSLDLTLQP 73 Query: 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYT 131 + + + + N L +Q MG+ + + + + +++ + ++ Sbjct: 74 PTPLPMVLVMALPRPNMLKRTLQNITAMGVKDLYLIHSAKVEKSYWQSPVLQTESIQQCL 133 Query: 132 ISAAEQCDILTLPFIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 + EQ +P + L ++ L K + Sbjct: 134 LEGLEQAKDTVMPNWSLIPRFRPFVEDQLPDILKDKMGLLAHPY-------LAKRCPVDI 186 Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 + +GPEGG++ E H + + LG RIL+ +T Sbjct: 187 QQPCVLALGPEGGWNEFEVSKWHEAG-MESVHLGDRILKVET 227 >gi|116328047|ref|YP_797767.1| hypothetical protein LBL_1342 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331500|ref|YP_801218.1| hypothetical protein LBJ_1942 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120791|gb|ABJ78834.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125189|gb|ABJ76460.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 260 Score = 67.2 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 33/232 (14%) Query: 31 YLAHVL------RMKEGDNILLFNGK-DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83 ++ ++L R+K G L + L KI I + + +V Sbjct: 28 HICNILNKREGARLKAG----LIDTSLGKFILEKIE--SNRIVGIYKPILVPIPRFPEVH 81 Query: 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQC 138 + + + + ++Q + G+ +I ++R ++ +N + + + EQ Sbjct: 82 ILLAINRPPTVRKILQLAGTWGVSSIHFFVSRNSRREYLTSPVWNSTEIESELLEGMEQG 141 Query: 139 DILTLPFIY-------PPTTLEFLLKNWDHNCQIVF------ADETCGSENSLEKLHAIA 185 + LP I+ LE K D + V + + S + Sbjct: 142 KNIFLPKIHFDFKNRSETILLEKF-KKVDFTFRFVLDRRGATLPQIIEEKKSDSNFGMPS 200 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 P V + IGPE G+ E + F L+L R+LR++TA ++ + Sbjct: 201 KTPQVLVAIGPESGFVRNEIDFWKRFGF-KKLNLSSRVLRTETAVAFLLSRL 251 >gi|257456398|ref|ZP_05621594.1| RNA methyltransferase, RsmE family [Treponema vincentii ATCC 35580] gi|257446058|gb|EEV21105.1| RNA methyltransferase, RsmE family [Treponema vincentii ATCC 35580] Length = 321 Score = 66.8 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 91/275 (33%), Gaps = 62/275 (22%) Query: 25 SGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK---- 78 + +++ ++ VL++ G + +G+ G ++I + S Q Sbjct: 33 TDERFLHIKKVLKLSAGSAFKAGIIDGEKG--TAEIISFSDELLTARFSASAEQAPDNGD 90 Query: 79 -----QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133 ++ I + +L +++ +G+ A+ T + ++ D Sbjct: 91 CPSSALPHIRLILGFPRPIQLRRILRDVAGLGIEALYLTGTELGEKSYLQAD----IAAE 146 Query: 134 A---------AEQCDILTLPFIYPPTTLEFLLKNWDHNC--------------------- 163 A Q +P +Y +L ++ Sbjct: 147 AEIERLLIDGCSQAGETHIPTVYRAYSLRHFFDRYEDEILPDHLRAVLDVPFQVEQDKID 206 Query: 164 ------------QIVFADETCGSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETLH 209 +IV +++ ++ L + + + +G E G+ E+ Sbjct: 207 QAHIERKPIEQNRIVHGEDSNLYTPAIYPLPQLQWDGAKTLWLAVGNERGWSLNERLLFA 266 Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 F T +G RILR++TA +A+A+ A+ G W Sbjct: 267 KKRF-TVYGMGQRILRTETAVTSAVAVCLALSGAW 300 >gi|83286253|ref|XP_730081.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23489691|gb|EAA21646.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 442 Score = 66.8 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 16/220 (7%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80 G Q +L ++L++K I + G+ I + +SQ Sbjct: 23 DGRQTSHLKNILKVKLNQIIKVGVINKGKGEGIILEENPKFYIIKLLTPIHLEKSQNNFL 82 Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISAA 135 + + + L+ +Q+ +G+ I V + Y+ D ++ Sbjct: 83 PIDVVLCIPRPKVLNKALQQLSSVGVKKIIIVFSEYSNKCYESSKMLKNDEIKFALQLGL 142 Query: 136 EQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAI--AHIPN 189 EQ + P +Y T N D N V A +N ++I Sbjct: 143 EQAMCTSFPKVYVHYTFSSFFMNIQNYCDENTIKVCAHTDIKKKNEHPLEYSILNKEKGK 202 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + +++G E G+ E L L F L+L RIL+ +TA Sbjct: 203 ILLMLGCERGFSDLEIYLLQKLNF-NFLNLSERILKCETA 241 >gi|237798073|ref|ZP_04586534.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806073|ref|ZP_04592777.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020925|gb|EGI00982.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027186|gb|EGI07241.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv. oryzae str. 1_6] Length = 138 Score = 66.5 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 104 MGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 MG+ + + + + + + + +R I EQ LP I + +++ Sbjct: 2 MGVPKVVLMNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDCVLPEIVIEKRFKPFVED 61 Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218 + A+ V + IGPEGG+ E + L + P+ Sbjct: 62 RLPQMAANTLGLVGHPGDFPACPRAVTQP--VTLAIGPEGGWIPYEIDLLQKSG-LQPVQ 118 Query: 219 LGPRILRSDTAAVAAMALV 237 LG RILR +TA A +A + Sbjct: 119 LGERILRVETAVTALLARL 137 >gi|70945070|ref|XP_742395.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521354|emb|CAH84664.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 431 Score = 66.5 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 12/171 (7%) Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNM 124 + + Q + + + L+ +Q+ +G+ I V + Y+ Sbjct: 72 IHLEQPQNNFLPIDVVLCIPRPKVLNKALQQLSSVGVKKIIIVFSEYSNKCYESSKMLKN 131 Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEK 180 D ++ EQ + P +Y T N D N V A +N Sbjct: 132 DEIKLALQLGLEQAMCTSFPKVYMHYTFSSFFMNIQNYCDENTIKVCAHTDIKKKNEYPL 191 Query: 181 LHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 H+I + +++G E G+ E L L F L+L RIL+ +TA Sbjct: 192 EHSILNKEKGKILLMLGCERGFSDLEIYLLQKLNF-NFLNLSERILKCETA 241 >gi|297185081|gb|ADI21190.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09] Length = 44 Score = 66.1 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 +E ++ F +SLGPRILR++TA++AA++++QA G Sbjct: 6 KEIQSAREFGF-NGISLGPRILRTETASLAAISIIQAKWG 44 >gi|312958499|ref|ZP_07773019.1| hypothetical protein PFWH6_0395 [Pseudomonas fluorescens WH6] gi|311287042|gb|EFQ65603.1| hypothetical protein PFWH6_0395 [Pseudomonas fluorescens WH6] Length = 235 Score = 66.1 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 28/222 (12%) Query: 31 YLAHVLRMKEGDNILLFNGK-----DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85 ++ V R GD++ + G+ L ++ ++ + Q + Sbjct: 26 HMQEVHRASVGDSLRV--GRIGGLMGNAHLLRLEAREAELQVSFD-QPPPAKLPLTLLLA 82 Query: 86 FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDI 140 K R ++Q MG+ + V + + + + + VR I EQ Sbjct: 83 LPRPKMLRR--VLQTVAAMGVPKVVLVNSYRVEKSFWQTPFLEPEAVREQLILGLEQARD 140 Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIG 195 LP I + +++ T G+ + P V + IG Sbjct: 141 TVLPEIIIEKRFKPFVEDRLPAM-------TQGTLGLIGHPGDYPPCPRGLDEPVTLAIG 193 Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 PEGG+ E + L + P+ LG RILR +TA A +A + Sbjct: 194 PEGGWIPYEVDLLTKAG-LQPVQLGARILRVETAVTALLARL 234 >gi|466982|gb|AAA17168.1| B1937_F2_57 [Mycobacterium leprae] Length = 128 Score = 65.7 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%) Query: 142 TLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + T LL+ + + + + ++A ++ +L+GP Sbjct: 16 HIPSVDGVLTTAALLQRIRDEVAAGATVLALHESATDRLSDVFADISVAQANSLVLLVGP 75 Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 EGG +E L V + LGP +LRS T Sbjct: 76 EGGIAPDEIAALTEAGAV-AVRLGPTVLRSST 106 >gi|221057888|ref|XP_002261452.1| hypothetical protein, conserved [Plasmodium knowlesi strain H] gi|194247457|emb|CAQ40857.1| hypothetical protein, conserved [Plasmodium knowlesi strain H] Length = 414 Score = 65.7 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 68/203 (33%), Gaps = 18/203 (8%) Query: 49 GKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEM 104 GK I+ K + +S+ + + + L+ +Q+ + Sbjct: 51 GKG---EGVITEESKKYYTIKLLGAIHLQKSEDTYIPIDVVICIPRPKVLNKFLQQLSSV 107 Query: 105 GMGAIRPVITRYTQN-----THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 G+ I V + + + ++ EQ P ++ + N Sbjct: 108 GVKKIIIVFSDFANKSYESSKVLKNEEIKNALQLGLEQAMCTEFPEVFIHYSFSSFAMNI 167 Query: 160 D-----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214 D ++ E +++ +E+ + +++G E G+ E + L F Sbjct: 168 DRYSDDKTIKLCAHTEVKRNDSCVERDILCREQGKILLMVGCERGFSELEIYLIKKLQF- 226 Query: 215 TPLSLGPRILRSDTAAVAAMALV 237 +L RIL+ +TA + + + Sbjct: 227 RFFNLTERILKCETALLVIIGQL 249 >gi|229587942|ref|YP_002870061.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens SBW25] gi|229359808|emb|CAY46658.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 235 Score = 65.3 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 20/218 (9%) Query: 31 YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVG-KSIRFKVEY-QSRSQTKQSDVQYIF 86 ++ V R GD++ + G+ +++ + + +V + Q + Sbjct: 26 HMQEVHRAVVGDSLRV--GRIGGLMGNAQLVRLEAREAELQVSFDQPPPAKLPLTLLLAL 83 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDIL 141 K R ++Q MG+ + V + + + + + +R I EQ Sbjct: 84 PRPKMLRR--VLQTVAAMGVPKVVLVNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDT 141 Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGG 199 LP I +E K + + + T G A V + IGPEGG Sbjct: 142 VLPEI----VIEKRFKPFVEDRLPAMTEGTLGLIGHPGDYPACPRGLDEPVTLAIGPEGG 197 Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 + E + L + P+ LG RILR +TA A +A + Sbjct: 198 WIPYEVDLLTQAG-LQPVQLGARILRVETAVTALLARL 234 >gi|224012771|ref|XP_002295038.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969477|gb|EED87818.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 309 Score = 64.5 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 + ++ H P + +GPE G+ EE +LG ILR DTA +A + +V Sbjct: 225 QNTTSVDHTPKAIVAVGPERGWTDEEANIFVDQCGFETATLGSSILRVDTAVIAGLGVVS 284 Query: 239 AIC 241 A Sbjct: 285 AAL 287 >gi|294896504|ref|XP_002775590.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239881813|gb|EER07406.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 288 Score = 63.0 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 32/246 (13%) Query: 22 GKASGDQYH--YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + ++ VL+ + GD I + +G + + S V +RFKV++ + Q Sbjct: 33 VRLPSSDARAKHVQKVLKSEPGDWIRAGVIDGPLCSVMVEESSVELGVRFKVDFAAPIQG 92 Query: 78 KQ--------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NM 124 V I + + + ++G+ I + + + Sbjct: 93 AGAEAGAMADPGVDLILCAPRPKVMARLWPTIAQLGVKRICIITAERVEKAFWATHVLRP 152 Query: 125 DRVRTYTISAAEQ-CDILTLPFIY-PPTTLEFLLK-------NWDHNCQIVFADET--CG 173 + R + EQ TL + P + E L + C++V Sbjct: 153 EFYRPLLLKGLEQASVDTTLTKVSVHPKSFERFLNGELERSFPEEKYCRLVCHPYDGCSQ 212 Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 ++ K V + +GPEGG+ E E + F ++ PRI +D VA Sbjct: 213 LHEAVVKCLGSGSPKRVVLALGPEGGWLDYEIEMMREKGFECVTTM-PRIFSTD---VAL 268 Query: 234 MALVQA 239 +LV Sbjct: 269 TSLVSV 274 >gi|86171421|ref|XP_966208.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|46361174|emb|CAG25038.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 434 Score = 62.2 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 17/218 (7%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDV 82 Q +L ++L + I + G+ K+ K + + + +S + Sbjct: 26 QTSHLKNILNVTLNQIIKVGVINKGKGEGKVIEESKSYYIIKLLTPIHLEEKSDDNVLPI 85 Query: 83 QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISAAEQ 137 + + L+ ++Q+ +G+ I V + ++ + ++ EQ Sbjct: 86 DVVLCIPRPKVLNKLLQQLSSLGVKKIIIVFSDFSNKCYESSKILKNEEIKLALQLGLEQ 145 Query: 138 CDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSENSLEKLHAIA--HIPNVA 191 P IY + K D + + A +N ++I + Sbjct: 146 AMCTRFPEIYIHYSFSSFFMNIEKYTDEHTLKICAHTNVKKKNMESIEYSILNMEKGKIL 205 Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 +++G E G+ E + L F +L RIL+ +TA Sbjct: 206 LMLGCERGFSELELYLIKKLNF-HFFNLTERILKCETA 242 >gi|332298993|ref|YP_004440915.1| Ribosomal RNA small subunit methyltransferase E [Treponema brennaborense DSM 12168] gi|332182096|gb|AEE17784.1| Ribosomal RNA small subunit methyltransferase E [Treponema brennaborense DSM 12168] Length = 257 Score = 62.2 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 81/242 (33%), Gaps = 44/242 (18%) Query: 14 FPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYV-GKSIRFKVE 70 P I+ S ++ ++ VL GD + NG+ G ++I + I F E Sbjct: 7 TPEEIRAPLPLSDERAKHITVVLHKTAGDTFEAGIVNGRAG--TARIESIRSDGIEFSFE 64 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRV 127 QS + + I + +L +++ +G A+ T + ++ ++R Sbjct: 65 AQSDGKPLYP-LTMIIGFPRPIQLKRLLRDVASLGAAAVHLTGTELGEKSYMKSSLVER- 122 Query: 128 RTYTISAAE-------QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180 +AA Q +P +Y T+L L A +T G++ Sbjct: 123 ----GAAARMLQDGSIQAKSTHVPELYLHTSLGECLMALSSR---NAAGKTSGAQPVRAA 175 Query: 181 LHAIAH-------------------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 L + V +G E G+ E+ L F T +G Sbjct: 176 LDNVRPECSLTDHPEIKNAGAAGLRERGVIAAVGSERGWTDNERTLLTDAGF-TLCGMGT 234 Query: 222 RI 223 RI Sbjct: 235 RI 236 >gi|294900881|ref|XP_002777160.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239884621|gb|EER08976.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 288 Score = 62.2 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 32/246 (13%) Query: 22 GKASGDQYH--YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77 + ++ VL+ + GD I + +G + + S V +RFKV++ + Q Sbjct: 33 VRLPSSDARAKHVQKVLKSEPGDWIRAGVIDGPLCSVMVEESSVELGVRFKVDFAAPIQG 92 Query: 78 KQ--------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NM 124 V I + + + ++G+ I + + + Sbjct: 93 AGAEAGAMADPGVDLILCAPRPKVMARLWPTIAQLGVKRICIITAERVEKAFWATHVLRP 152 Query: 125 DRVRTYTISAAEQ-CDILTLPFIY-PPTTLEFLLK-------NWDHNCQIVFADETCGSE 175 + R + EQ TL + P + E L + C++V S+ Sbjct: 153 EFYRPLLLKGLEQASVDTTLTKVSVHPKSFERFLNGELERSFPEEKYCRLVCHPYDGCSQ 212 Query: 176 NSLEKLHAIAHI--PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 + + + V + +GPEGG+ E E + F ++ PRI +D VA Sbjct: 213 LHEAVVKCLGNGSAKRVVLALGPEGGWLDYEIEMMREKGFECVTTM-PRIFSTD---VAL 268 Query: 234 MALVQA 239 +LV Sbjct: 269 TSLVSV 274 >gi|156101085|ref|XP_001616236.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805110|gb|EDL46509.1| hypothetical protein, conserved [Plasmodium vivax] Length = 443 Score = 61.8 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 11/174 (6%) Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVR 128 +++ + + + L+ +Q+ +G+ I V + + + + ++ Sbjct: 77 KAEDTYIPIDVVICIPRPKVLNKFLQQLSSVGVKKIVIVFSNFANKSYESSRVLKNEEIK 136 Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHA 183 EQ P ++ + + N D ++ E S +E+ Sbjct: 137 NALQLGLEQAMCTQFPQVFIHYSFSSFVMNIDRYSDERTIKLCAHTEVRRSAGCVERDIL 196 Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 A + +++G E G+ E + L F +L RIL+ +TA + + + Sbjct: 197 GAERGKILLMVGCERGFSELEIFLIRKLQF-RFFNLTERILKCETALLVIIGQL 249 >gi|113954566|ref|YP_730658.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9311] gi|113881917|gb|ABI46875.1| Protein of unknown function (DUF558) family protein [Synechococcus sp. CC9311] Length = 244 Score = 59.5 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 75/235 (31%), Gaps = 12/235 (5%) Query: 11 FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 F++ T D+ ++ VL G ++ + + + Sbjct: 11 FINHS----TTAIIRDDRLVHIRQVLNPNVGQSLKVGLLGGNCGYGIVESINSYGIILQI 66 Query: 71 YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MD 125 + + + + + L +++ E G+ + + + + + + + Sbjct: 67 VLNEPAPHRHPFDIVLALPRPKMLRRILRTIAEYGVENLHLINSARVEKSFWQSPLLTPE 126 Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 ++ I E+ + + +++ + + + + + Sbjct: 127 KIHDALIVGMERSKDTLMTNVKLHRRFRPFVEDQLPEICVNRTCWLTDMKATQSIVDIES 186 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 ++IGPEGG+ E E + + LG R L DTA +A QA+ Sbjct: 187 SSKPAVVMIGPEGGFVPFEIELAETK-IARSVHLGGRTLSVDTAVTTVLA--QAL 238 >gi|224002613|ref|XP_002290978.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana CCMP1335] gi|220972754|gb|EED91085.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana CCMP1335] Length = 147 Score = 59.1 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 17/119 (14%) Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-------GSENSLEKLHAIA----- 185 I P I+ L+ + D +++ E + ++++ I Sbjct: 25 SHIFRNPEIFMEDELDEIF-PPDEFVRVIAHPERKSVDGEVIAEGDKVKRMTDIEFPMDG 83 Query: 186 --HIPNVAILIGPEGGYHSE-EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 + + +GPEGG+ E + + F ++LG R+LRSD A V+ +AL +C Sbjct: 84 TGQPRKLLVAVGPEGGWEEPFELDMFTNKGF-KKITLGTRVLRSDVAVVSLLALAHEVC 141 >gi|299473302|emb|CBN77701.1| conserved unknown protein [Ectocarpus siliculosus] Length = 450 Score = 59.1 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Query: 189 NVAILIGPEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTA--AVAAMA 235 V + +GPEGG+ +E + L S F ++LG R+LRSD A A+ A+A Sbjct: 376 GVLVAVGPEGGWVEPDELQLLQSFGF-QAVTLGSRVLRSDVAVNALLALA 424 >gi|301168131|emb|CBW27718.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 237 Score = 58.0 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 68/179 (37%), Gaps = 11/179 (6%) Query: 54 WLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113 + ++I + ++ +++ + + ++ + + + +++ S +G +I Sbjct: 50 YKAEIIKLN-NLTCEIKVKEQLKSLSQWFHLLVGLSRPQTIKKVLEHSTTLGAKSIHLFK 108 Query: 114 T-----RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168 Y+Q++ Y + ++Y I Q + L + H + Sbjct: 109 ALLSEKSYSQSSIYRDENYKSYLIDGLAQSKTYFELPEFSLKNYLNLDQYKAHKNKFYL- 167 Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 + +E + ++L + IGPE G+ E+E L F +P+ + LR + Sbjct: 168 --SLNTEQTFKELSPGERDEP-LLAIGPERGWTRAEEEKLKEAGF-SPIKISHSTLRVE 222 >gi|225375402|ref|ZP_03752623.1| hypothetical protein ROSEINA2194_01027 [Roseburia inulinivorans DSM 16841] gi|225212738|gb|EEG95092.1| hypothetical protein ROSEINA2194_01027 [Roseburia inulinivorans DSM 16841] Length = 66 Score = 58.0 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGK 50 + + F++ + G +++ +VLRMK G+ I + NG+ Sbjct: 14 MYQFFIEDENAAEDFVTIEGSDVNHIKNVLRMKPGEKIRVCTRNGQ 59 >gi|153880552|ref|ZP_02005003.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152062984|gb|EDN64997.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 46 Score = 58.0 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243 E E + + + G RILR++TAA A +A+ Q + GD Sbjct: 2 TETEIELAKTAGY-QEIRFGTRILRTETAATAILAVCQTLWGD 43 >gi|145344330|ref|XP_001416688.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576914|gb|ABO94981.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 260 Score = 57.6 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 63/213 (29%), Gaps = 12/213 (5%) Query: 21 QGKASGDQYH--YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78 D + VLR GD++ G + I+ + Sbjct: 42 TVTLRADDARATHAREVLRSDVGDHVRAGTIDVGACEATIATMDDDEIVLKLGDDARGRG 101 Query: 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133 + ++ + + + L + +G+G + + + + + +R + Sbjct: 102 RPEIDLLLATPRPKVLRRLWAPLASLGLGRVVLANAQKVERYYFDSKALDAETIRGEILR 161 Query: 134 AAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189 EQ +P + L + L ++ + L A Sbjct: 162 GLEQAGDFLVPQVGVAMRLPPVVDRLKGALGNSSVTNGFEWLLDGPRELALEGVDARRSR 221 Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 V I +GPEGG+ E + F + LG R Sbjct: 222 VLIAVGPEGGWTDYELDLFEGAGF-KRVGLGTR 253 >gi|167837896|ref|ZP_02464779.1| hypothetical protein Bpse38_15512 [Burkholderia thailandensis MSMB43] Length = 125 Score = 57.2 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 142 TLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 +P + P + L +++ + L +V +LIGP Sbjct: 1 RVPDVAPVRGFDAWLDALPAAPAEGELRLLLSPRASV---PFALLPDAPPAGDVTLLIGP 57 Query: 197 EGGYHSEEKETLHSLP 212 EGG +E+ + Sbjct: 58 EGGLSPDEERAARAGG 73 >gi|183220982|ref|YP_001838978.1| hypothetical protein LEPBI_I1595 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911077|ref|YP_001962632.1| hypothetical protein LBF_1544 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775753|gb|ABZ94054.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779404|gb|ABZ97702.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 238 Score = 56.4 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 80/226 (35%), Gaps = 19/226 (8%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEY 71 + L + ++ ++ +L+ GD++ + G + +I + +S + E Sbjct: 8 EEELNTEKIVSLRDKRHQHIKSILKKNPGDSLQVVIPNLGNFFFRIIEIHESYSTLEREK 67 Query: 72 QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-------M 124 +++ + + FS + ++ + G I+ + T+ + Sbjct: 68 SLQTELEPLPIHCFFSLPRPQTAKKILHLA---GAYGIQSLSFFATETKNKEYWTSPVYT 124 Query: 125 DRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182 + + Q P I + L++W ++ + G +S Sbjct: 125 KEWIDWIETGMSQTGNNRTPKIIFGQNQNWKPYLESWQGEVIVL---DRMGDLDSKTMAQ 181 Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI-LRSD 227 +I + GPE G+ ++ + ++ +LG RI LR++ Sbjct: 182 SIGSEKQSLFVFGPESGWKPDDLDFFSKRKYLLH-TLG-RINLRTE 225 >gi|213417362|ref|ZP_03350504.1| hypothetical protein Salmonentericaenterica_05392 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 38 Score = 54.5 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGD 243 T + LGPR+LR++T A+ A+ +Q GD Sbjct: 8 TDILLGPRVLRTETTALTAITALQVRFGD 36 >gi|321443915|gb|EFX60233.1| hypothetical protein DAPPUDRAFT_344533 [Daphnia pulex] Length = 63 Score = 53.0 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 8 KRLFVDFPL----CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63 R +VD L ++ + VLR++ G + LF+G EW +++ +G+ Sbjct: 3 PRFYVDQLLGPSSSEPSELSLPPSAARH-VQVLRLQPGSPLTLFDGSGAEWQAEVLAMGR 61 Query: 64 S 64 S Sbjct: 62 S 62 >gi|315303209|ref|ZP_07873865.1| YqeU [Listeria ivanovii FSL F6-596] gi|313628424|gb|EFR96901.1| YqeU [Listeria ivanovii FSL F6-596] Length = 47 Score = 52.6 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245 +E V LGPRILR++TA + ++ D Y Sbjct: 1 EKEL-FFMQEKGVKLAGLGPRILRTETAPLYVLSATSFYF-DLY 42 >gi|169836552|ref|ZP_02869740.1| hypothetical protein cdivTM_05505 [candidate division TM7 single-cell isolate TM7a] Length = 70 Score = 52.2 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200 + I L + ++ +I+FA E G SL ++ N+ +IGPEGG Sbjct: 1 MKFTEITSVKRLSEI--DYQKYDKIIFAYENSGESKSLSEIIK-KEDKNILYIIGPEGGI 57 Query: 201 HSEEKETLH 209 ++E + L Sbjct: 58 TADEVDFLK 66 >gi|325521338|gb|EGD00190.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. TJI49] Length = 44 Score = 51.4 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDT 228 +E+ + F T LSLGPR+LR++T Sbjct: 2 SPDEENAARAHGF-TALSLGPRVLRTET 28 >gi|95007403|emb|CAJ20623.1| hypothetical protein TgIb.1500c [Toxoplasma gondii RH] Length = 188 Score = 50.3 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 10/106 (9%) Query: 22 GKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGK---SIRFKVE---YQS 73 +G + VL+++ G + +FNG G + + V + S++ +E + Sbjct: 43 VDLTGLAAQHCFSVLKVQVGSSLKVGVFNG--GICSANVVAVNQHPLSVQIHLERDIARE 100 Query: 74 RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119 S + + + + + LD ++Q S +G+G + V + + Sbjct: 101 PSASPAPLIDLLLAIPRPKTLDKILQVSATLGVGRLLLVCSERVEK 146 >gi|325529345|gb|EGD06278.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. TJI49] Length = 47 Score = 48.4 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI 44 + + R FV+ L + + A VLR++ GD + Sbjct: 8 AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDAL 46 >gi|297185079|gb|ADI21188.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09] Length = 89 Score = 48.4 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 15/95 (15%) Query: 1 MKIHSHL---KRLFVDFPLCIKTQGKASGDQYHYLA--HVLRMKEGDNILLFNGKDGEWL 55 M+ + L +R+ ++ L I + L HVLR+K+ + I +FNG E++ Sbjct: 1 MR-NHRLFLNQRIHLNKELKINQKKTX-------LFKXHVLRLKKEEKITIFNGTGCEFI 52 Query: 56 SKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSP 88 + I + +S V+ R+ + Sbjct: 53 ALIIQIKRSEITLKPVKKVYRNVESPFYIHLAQGI 87 >gi|67591903|ref|XP_665601.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54656365|gb|EAL35370.1| hypothetical protein Chro.60249 [Cryptosporidium hominis] Length = 239 Score = 48.0 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 70 EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT 129 ++ + + + + + + + ++Q +V +G+G I V T ++ ++ N +++ Sbjct: 144 IHKEKYKDDYPLIDLLIALPRPKVFEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKK 203 Query: 130 -----YTISAAEQCDILTLPFIYPPTTLEFLL 156 EQ P +Y + F L Sbjct: 204 ESIDEIVQLGLEQASKTLCPDVYVYASWTFFL 235 >gi|68005786|ref|XP_670143.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56485121|emb|CAI02714.1| conserved hypothetical protein [Plasmodium berghei] Length = 199 Score = 45.7 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 7/102 (6%) Query: 134 AAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAI--AHI 187 A Q + +Y TL N D N V A +N ++I Sbjct: 2 AIRQAMCTSFAKVYMHYTLTSFAMNIQNYCDENTIKVCAHTDIKKKNEHPIEYSILNKEK 61 Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 + +++G E G+ E L L F L+L RIL+ +TA Sbjct: 62 GKILLMLGCERGFSDLEIYLLQKLNF-NFLNLSERILKCETA 102 >gi|255074457|ref|XP_002500903.1| predicted protein [Micromonas sp. RCC299] gi|226516166|gb|ACO62161.1| predicted protein [Micromonas sp. RCC299] Length = 353 Score = 42.6 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 + +GPEGG+ E+ +L FV ++LG R Sbjct: 299 RAVVAVGPEGGWTDFERRSLLDAGFVE-VALGRR 331 >gi|328862392|gb|EGG11493.1| hypothetical protein MELLADRAFT_91067 [Melampsora larici-populina 98AG31] Length = 714 Score = 41.4 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 38 MKEGDNILL------FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91 M+ G+ I L +G+ G+W+ K+ VG S+R K + + R Q + + S K Sbjct: 168 MRVGEVITLAGEVVNMSGRGGKWIVKVVTVGDSVRCKKDEKIRKQNQPGGPCALGSLAKP 227 Query: 92 NR 93 +R Sbjct: 228 DR 229 >gi|2765835|emb|CAB09655.1| hypothetical protein [Acinetobacter haemolyticus] Length = 158 Score = 39.9 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 3/134 (2%) Query: 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87 Q +L L++ GD + + + +L+++ YV + + + ++ V I + Sbjct: 24 QLKHLQQHLQLSVGDTLKIGVRNEQRYLTEVLYVSEQRIIVKPIRVEAIPEKLPVHLILA 83 Query: 88 PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144 + L M+ +V +G+ I + + +++ + ++ Y EQ P Sbjct: 84 LPRPKVLRRMVMDAVTLGVERISLIHSYRVDKSYWQTPFLQQLDDYVTLGLEQAGDPIAP 143 Query: 145 FIYPPTTLEFLLKN 158 I + +++ Sbjct: 144 EIQLYKRFKPFVED 157 >gi|303273034|ref|XP_003055878.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461962|gb|EEH59254.1| predicted protein [Micromonas pusilla CCMP1545] Length = 200 Score = 39.9 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 16/44 (36%) Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213 T ++ + I +GPEGG+ E+ +L Sbjct: 110 RTERGLDAPPSPSRARAPARIVIAVGPEGGWTDRERASLIDEGG 153 >gi|294790472|ref|ZP_06755630.1| alcohol dehydrogenase, zinc-containing protein [Scardovia inopinata F0304] gi|294458369|gb|EFG26722.1| alcohol dehydrogenase, zinc-containing protein [Scardovia inopinata F0304] Length = 347 Score = 38.7 bits (90), Expect = 0.65, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP-I 89 + A V R++ GD +++ G L + + SR + +Q + + I Sbjct: 159 HAARVSRVQPGDTVVVM-GDGAVGLCGVISAKMMGAGHIIAMSRHEDRQKLAREFGATDI 217 Query: 90 KTNRLDYMIQKSVEM----GMGAI 109 R D + K +E+ G A+ Sbjct: 218 VPERGDEAVAKVMELTDGNGADAV 241 >gi|114566264|ref|YP_753418.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337199|gb|ABI68047.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 425 Score = 38.7 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 99 QKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 +K +EMG+ I V T Q ++ R A+ + + +L+ LL Sbjct: 204 EKVMEMGVDKI--VETWRKQMKRASLKRAERLVKVASRSVGRTSG-KVASEVSLQNLLAE 260 Query: 159 WDHNCQ 164 +D CQ Sbjct: 261 YDLYCQ 266 >gi|114567265|ref|YP_754419.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338200|gb|ABI69048.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 425 Score = 38.7 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 99 QKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 +K +EMG+ I V T Q ++ R A+ + + +L+ LL Sbjct: 204 EKVMEMGVDKI--VETWRKQMKRASLKRAERLVKVASRSVGRTSG-KVASEVSLQNLLAE 260 Query: 159 WDHNCQ 164 +D CQ Sbjct: 261 YDLYCQ 266 >gi|316935707|ref|YP_004110689.1| pyruvate kinase [Rhodopseudomonas palustris DX-1] gi|315603421|gb|ADU45956.1| pyruvate kinase [Rhodopseudomonas palustris DX-1] Length = 477 Score = 37.6 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 16/153 (10%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK----QSDVQYIFSPIKTNR 93 +K GD +LL +GK + + + +++ V S K + + +R Sbjct: 118 LKVGDALLLDDGK-VRLICEETEGDRAVTRVVIGGKMSDRKGVSLPDTDLPMSAMTNKDR 176 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 D ++ + E G+ V + Q ++ R AA + I P ++ Sbjct: 177 AD--LEAACETGID---WVALSFVQRAEDVVEAKRMIRGRAA------VMAKIEKPQAID 225 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 L D + ++ A G E LE++ ++ Sbjct: 226 RLQDILDVSDALMVARGDLGVEMPLERVPSLQK 258 >gi|299822746|ref|ZP_07054632.1| acetylornithine transaminase [Listeria grayi DSM 20601] gi|299816275|gb|EFI83513.1| acetylornithine transaminase [Listeria grayi DSM 20601] Length = 383 Score = 37.6 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 29/129 (22%) Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQI-VFADETCGSENSLEKLHAIA 185 ++AA+Q L I P LE L +K D Q+ GSE + Sbjct: 267 NKIALAAAKQ----VLTEIDQPAFLEELNIKAADFKKQLTALVKGLPGSEVRGKGFLLGI 322 Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR-----SDT----AAVAAMAL 236 +P GP ++E + LS GP +LR + T AA A+A+ Sbjct: 323 ELP------GP-----ADEVIAACRENGLLVLSAGPNVLRILPPLTATEEEIAA--ALAI 369 Query: 237 VQ-AICGDW 244 + A+ W Sbjct: 370 LNDALLEKW 378 >gi|23013160|ref|ZP_00053093.1| COG0469: Pyruvate kinase [Magnetospirillum magnetotacticum MS-1] Length = 448 Score = 36.8 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 25/192 (13%) Query: 11 FVD--FPLCIKTQGKASGDQYHYLAHVLR-----------MKEGDNILLFNGKDGEWL-- 55 FVD L + D L LR +K G +L+ +GK + Sbjct: 42 FVDGRARLEAGAVFRLDMDDA--LGTALRAPLHHPEVFAALKPGSELLIDDGKLRLAVES 99 Query: 56 SKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT 114 + + E + +V SP+ + +R D ++ +VEMG I Sbjct: 100 CGPDFAETRVVVGGEISNHKGVNVPNVMLPISPLTEKDRRD--LEFAVEMGADWIALSFV 157 Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174 + + R + L + P+ +E L + + ++ A G Sbjct: 158 QR--PSDVQEARKLIAAYVG---SRVRILSKLEKPSAIEHLASIIEWSDAVMVARGDLGV 212 Query: 175 ENSLEKLHAIAH 186 E E + + Sbjct: 213 ECPPETVPILQK 224 >gi|224059357|ref|XP_002299833.1| predicted protein [Populus trichocarpa] gi|224098531|ref|XP_002334547.1| predicted protein [Populus trichocarpa] gi|222847091|gb|EEE84638.1| predicted protein [Populus trichocarpa] gi|222873214|gb|EEF10345.1| predicted protein [Populus trichocarpa] Length = 136 Score = 36.8 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 42 DNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK 100 + + L +G G +L +S K+I K+ Q + I ++ + K Sbjct: 16 EAVELRDGDKGRYLGNSVSRAVKNINEKISEALIDMDPALQSQIDQAMIDLDKTEN---K 72 Query: 101 SVEMGMGAIRPVITRYT 117 E+G AI + T T Sbjct: 73 G-ELGANAITWIGTLCT 88 >gi|308187912|ref|YP_003932043.1| Transposase B from transposon Tn554 [Pantoea vagans C9-1] gi|308058422|gb|ADO10594.1| Transposase B from transposon Tn554 [Pantoea vagans C9-1] Length = 612 Score = 36.8 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 21/36 (58%) Query: 13 DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN 48 + L + + GD + +L+ VL MK+ D+I++ N Sbjct: 566 NPELPDGSLVRTHGDDFSHLSRVLEMKKDDSIIINN 601 >gi|160894583|ref|ZP_02075359.1| hypothetical protein CLOL250_02135 [Clostridium sp. L2-50] gi|156863894|gb|EDO57325.1| hypothetical protein CLOL250_02135 [Clostridium sp. L2-50] Length = 189 Score = 36.8 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 18/24 (75%) Query: 32 LAHVLRMKEGDNILLFNGKDGEWL 55 + VLR++EGD + +F GKDGE + Sbjct: 30 IRRVLRIREGDPLEIFTGKDGEVI 53 >gi|317037025|ref|XP_001398262.2| integral membrane protein [Aspergillus niger CBS 513.88] Length = 623 Score = 36.8 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------NSLEKLHAIAHIPNVAI 192 + + PP+ + L D ADE E ++L + P A+ Sbjct: 240 NRNQTYTLSPPSPMRELESTSDEER----ADEIKEPEVRPSIEHTLTSVIGEGEEPRFAV 295 Query: 193 LIGPEG----GYHSEEKETLHSL 211 L PEG G+ EE E L+ Sbjct: 296 L--PEGSNLAGWSPEEIEELNDH 316 >gi|134083829|emb|CAK97393.1| unnamed protein product [Aspergillus niger] Length = 618 Score = 36.8 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------NSLEKLHAIAHIPNVAI 192 + + PP+ + L D ADE E ++L + P A+ Sbjct: 240 NRNQTYTLSPPSPMRELESTSDEER----ADEIKEPEVRPSIEHTLTSVIGEGEEPRFAV 295 Query: 193 LIGPEG----GYHSEEKETLHSL 211 L PEG G+ EE E L+ Sbjct: 296 L--PEGSNLAGWSPEEIEELNDH 316 >gi|322827689|gb|EFZ31755.1| hypothetical protein TCSYLVIO_1929 [Trypanosoma cruzi] Length = 707 Score = 36.4 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 24/145 (16%) Query: 57 KISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMG-MGAIRP 111 + + VE + + DV Y +S K +K+ E+ + A+ Sbjct: 87 VLEEREREATCVVEEAKETNEYKEDVNYFYSIEKKE------EKATSLQEELERLNALHV 140 Query: 112 VIT--RYTQNTHYNMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 ++T R+ + +R+R A QC + L + + T + LL +W ++ Sbjct: 141 LLTAPRHMDTSLAKAERLRQEYRDAL-QCVFERLRVAVVDETMTFDALLYSW----FLLL 195 Query: 168 ADETCGSENSLEKLHAIAHIPNVAI 192 G++ LE L + Sbjct: 196 ----QGAQPLLEALTERRKFDENTL 216 >gi|157369246|ref|YP_001477235.1| putative thiol-disulfide oxidoreductase DCC [Serratia proteamaculans 568] gi|157321010|gb|ABV40107.1| putative thiol-disulphide oxidoreductase DCC [Serratia proteamaculans 568] Length = 147 Score = 36.4 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYM 97 ++ GD +LLF+G+ + ++ ++ R + Q+++ + + T+R D + Sbjct: 10 LQPGDRVLLFDGECNLCHGLVRFLIRADRQGKILLATVQSEEGQAILRWLVLPTDRFDSI 69 Query: 98 I 98 + Sbjct: 70 V 70 >gi|256821970|ref|YP_003145933.1| hypothetical protein Kkor_0745 [Kangiella koreensis DSM 16069] gi|256795509|gb|ACV26165.1| hypothetical protein Kkor_0745 [Kangiella koreensis DSM 16069] Length = 178 Score = 36.4 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 7 LKRLFVDFPLCIKT----QGKASGDQYHYLAHVLR 37 ++R F ++ + SG+ + +L+ VLR Sbjct: 131 MRRFFQHKKQRLRQLLIFRDAVSGEDFRHLSRVLR 165 >gi|258542083|ref|YP_003187516.1| carbamoyl phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-01] gi|256633161|dbj|BAH99136.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636218|dbj|BAI02187.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639273|dbj|BAI05235.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642327|dbj|BAI08282.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645382|dbj|BAI11330.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648437|dbj|BAI14378.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651490|dbj|BAI17424.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654481|dbj|BAI20408.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1084 Score = 36.4 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 27/109 (24%) Query: 128 RTYTISAAEQCDI--LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185 ++A Q L++ I+ E +I+ A+ + + ++ Sbjct: 432 ERILMAA--QALRAGLSVDDIHEACKFEPWF--LREMEKIIHAEREVENHGLPKDAQSLR 487 Query: 186 HIPNVAILIGPEGGYH-----------SEEKETLHSLPFVTPLSLGPRI 223 + + G+ EE L + VTP+ RI Sbjct: 488 RLKAL--------GFSDVQLSRLSGTQPEEVAKLRAEAGVTPVY--KRI 526 >gi|116255742|ref|YP_771575.1| putative glycine degradation aminomethyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115260390|emb|CAK03494.1| putative glycine degradation aminomethyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 789 Score = 36.4 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67 V+R++ GD + + + + G+ L +IS++ + RF Sbjct: 43 VMRVEPGDRVSVIDSEGGQ-LCEISFLDEKGRF 74 >gi|254451351|ref|ZP_05064788.1| RNA polymerase sigma-70 factor, ECF subfamily [Octadecabacter antarcticus 238] gi|198265757|gb|EDY90027.1| RNA polymerase sigma-70 factor, ECF subfamily [Octadecabacter antarcticus 238] Length = 413 Score = 36.0 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 11/92 (11%) Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 + +DR+R A++Q +I L + + + D +++F E Sbjct: 66 SVAWRKAIDRIRRSANFASKQGEIAYLMELDRVAE-DKVEGFGDERLKMIFTCCHPALEE 124 Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 + + GG +EE Sbjct: 125 KTRVALTLRTL----------GGLSTEEIAMA 146 >gi|254421004|ref|ZP_05034728.1| Amylo-alpha-1,6-glucosidase family [Brevundimonas sp. BAL3] gi|196187181|gb|EDX82157.1| Amylo-alpha-1,6-glucosidase family [Brevundimonas sp. BAL3] Length = 715 Score = 35.6 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 24/150 (16%) Query: 26 GDQYHYLAHVL---RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD- 81 G +H + V R K G + + + K R S + + Sbjct: 140 GADFHDIFQVRGTHRAKRG-TVHTPTTDGRRVTFRYVGLDKVERSSCLAFSEPPARLTHQ 198 Query: 82 -VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA--EQC 138 +++FS K +D I E G+ + + R R + A + Sbjct: 199 RAEFMFSLPKGRSMDLFI----ECGVDS--------CETPDAR--RWRENAVQARLGMRA 244 Query: 139 DILTLPFIYPPTT--LEFLLKNWDHNCQIV 166 + P + L + ++ Sbjct: 245 KRRRGASVRGPRSPRFNDWLDQSRADMALL 274 >gi|168036426|ref|XP_001770708.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678069|gb|EDQ64532.1| predicted protein [Physcomitrella patens subsp. patens] Length = 407 Score = 35.6 bits (82), Expect = 5.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 133 SAAEQ--CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190 SA Q C F++ P + L D + E+C S L +HA A +P Sbjct: 317 SARMQIRCGRGRGRFLFYPMRHDTALSMLDFAAVDLIPAESCASRFLLFAIHASAPVPPH 376 Query: 191 AILI 194 I + Sbjct: 377 RIFV 380 >gi|312198632|ref|YP_004018693.1| pyruvate kinase [Frankia sp. EuI1c] gi|311229968|gb|ADP82823.1| pyruvate kinase [Frankia sp. EuI1c] Length = 471 Score = 35.6 bits (82), Expect = 5.7, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 13/152 (8%) Query: 39 KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS----PIKTNRL 94 K GD IL+ +G+ + I V + + + + P T++ Sbjct: 117 KTGDRILVDDGR---LVLTIDGVTDTDVHTTVVIGGPVSNNKGMNIPSAALTVPALTDKD 173 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154 + ++ ++E+G+ ++ + + ++VR A + + I P + Sbjct: 174 EEDLRYALELGVD----MVALSFVRSAADAEKVRKIMDEAGI--RVPVIAKIEKPQAVAE 227 Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 L + ++ A G E LE + + Sbjct: 228 LDGIVEAFDGLMVARGDLGVELPLEDVPLVQK 259 >gi|39937253|ref|NP_949529.1| pyruvate kinase [Rhodopseudomonas palustris CGA009] gi|192293034|ref|YP_001993639.1| pyruvate kinase [Rhodopseudomonas palustris TIE-1] gi|39651111|emb|CAE29634.1| pyruvate kinase [Rhodopseudomonas palustris CGA009] gi|192286783|gb|ACF03164.1| pyruvate kinase [Rhodopseudomonas palustris TIE-1] Length = 477 Score = 35.6 bits (82), Expect = 5.7, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 16/153 (10%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK----QSDVQYIFSPIKTNR 93 +K GD +LL +GK + + + +++ V S K + + +R Sbjct: 118 LKVGDALLLDDGK-VRLICEETQGDRAVTRVVIGGKMSDRKGVSLPDTDLPMSAMTNKDR 176 Query: 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 D ++ + E G+ V + Q ++ R AA + I P ++ Sbjct: 177 AD--LEAACETGID---WVALSFVQRAEDVVEAKRMIRGRAA------VMAKIEKPQAID 225 Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 L D + ++ A G E LE++ ++ Sbjct: 226 RLEDILDVSDALMVARGDLGVEMPLERVPSLQK 258 >gi|134081705|emb|CAK46639.1| hypothetical protein An14g04030 [Aspergillus niger] Length = 160 Score = 35.6 bits (82), Expect = 5.8, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%) Query: 213 FVTPLSLGPR---ILRSDTAA 230 F T +SLGPR +LRS+TA Sbjct: 38 FRTEISLGPRRKYVLRSETAG 58 >gi|167721250|ref|ZP_02404486.1| hypothetical protein BpseD_19736 [Burkholderia pseudomallei DM98] Length = 44 Score = 35.6 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 6/28 (21%), Positives = 9/28 (32%) Query: 5 SHLKRLFVDFPLCIKTQGKASGDQYHYL 32 + + R FVD L D + Sbjct: 17 AAVPRFFVDAALRADATLALPADVARHA 44 >gi|24373204|ref|NP_717247.1| membrane-associated zinc metalloprotease, putative [Shewanella oneidensis MR-1] gi|24347425|gb|AAN54691.1|AE015609_10 membrane-associated zinc metalloprotease, putative [Shewanella oneidensis MR-1] Length = 456 Score = 35.6 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 12/91 (13%) Query: 38 MKEGDNILLFNGKD-GEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT--NRL 94 +K GD ++ NG+ +W + + + S VE R +Q + + IK + Sbjct: 245 LKVGDTLVAINGQQYTDWQAFVDIIQHSANVPVELTVRRNGEQFAISVTPASIKNSDGK- 303 Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125 E+G+ + P ++ +N ++ Sbjct: 304 --------EIGVLGVSPTQAQWPENMRLQLE 326 >gi|91975881|ref|YP_568540.1| pyruvate kinase [Rhodopseudomonas palustris BisB5] gi|91682337|gb|ABE38639.1| pyruvate kinase [Rhodopseudomonas palustris BisB5] Length = 477 Score = 35.3 bits (81), Expect = 7.5, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 20/155 (12%) Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK----QSDVQYIFSPIKTNR 93 +K GD +LL +GK + + + +++ V S K + + +R Sbjct: 118 LKVGDALLLDDGK-VRLICEEASHDRAVTRVVIGGKMSDRKGVSLPDTDLPVSAMTHKDR 176 Query: 94 LDYMIQKSVEMGMG--AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 D ++ + E G+ A+ V M R R ++ I P Sbjct: 177 AD--LEAACETGIDWVALSFVQRADDVAEAKRMIRGRAAVMA-----------KIEKPQA 223 Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186 ++ L + D + ++ A G E LE++ ++ Sbjct: 224 IDRLQEILDVSDALMVARGDLGVEMPLERVPSLQK 258 >gi|297822671|ref|XP_002879218.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325057|gb|EFH55477.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 475 Score = 35.3 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 42 DNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK 100 + I L +G G +L +S K+I K+ + Q + I ++ + K Sbjct: 89 EAIELRDGDKGMYLGNSVSKAVKNINEKISEALIGMDPKLQGQIDQAMIDLDKTE----K 144 Query: 101 SVEMGMGAI 109 E+G AI Sbjct: 145 KSELGANAI 153 >gi|284046576|ref|YP_003396916.1| oxidoreductase alpha (molybdopterin) subunit [Conexibacter woesei DSM 14684] gi|283950797|gb|ADB53541.1| oxidoreductase alpha (molybdopterin) subunit [Conexibacter woesei DSM 14684] Length = 766 Score = 35.3 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 104 MGMG--AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 +G+ AI V++ + ++R R A C P P L+ Sbjct: 692 LGVADGAIVDVVSEWEDGVERRVERFRAVAYPTARGCAAAYYPETNPLVPLD 743 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.196 0.670 Lambda K H 0.267 0.0601 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,865,873,222 Number of Sequences: 14124377 Number of extensions: 311339744 Number of successful extensions: 840136 Number of sequences better than 10.0: 2457 Number of HSP's better than 10.0 without gapping: 2961 Number of HSP's successfully gapped in prelim test: 1708 Number of HSP's that attempted gapping in prelim test: 823849 Number of HSP's gapped (non-prelim): 4861 length of query: 245 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 110 effective length of database: 2,936,002,735 effective search space: 322960300850 effective search space used: 322960300850 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 81 (35.3 bits)