BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498
methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (245 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040837|gb|ACT57633.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score =  517 bits (1332), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY
Sbjct: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT
Sbjct: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK
Sbjct: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI
Sbjct: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240

Query: 241 CGDWY 245
           CGDWY
Sbjct: 241 CGDWY 245


>gi|315122545|ref|YP_004063034.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495947|gb|ADR52546.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 254

 Score =  359 bits (921), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/245 (72%), Positives = 211/245 (86%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK+H  LKRLFV+F L  K QGKAS  QYHYLAHVLRMKE + +L+FNG+DGEW+S ISY
Sbjct: 1   MKMHPPLKRLFVNFSLQPKAQGKASDAQYHYLAHVLRMKEKEKVLIFNGEDGEWISTISY 60

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           + KSI F VE+Q+R+QTK SD+ YIFSPIKTNRLDYMIQKSVEMG+ AIRPVITRYTQNT
Sbjct: 61  IKKSISFNVEHQTRTQTKPSDLHYIFSPIKTNRLDYMIQKSVEMGVSAIRPVITRYTQNT 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           H N++R+RTY ISAAEQC+I++LP I+PP TL+ LL++WD N  IVFADETC  ENS  K
Sbjct: 121 HCNVNRMRTYAISAAEQCNIISLPSIHPPITLDTLLEDWDQNRHIVFADETCIHENS--K 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + AIAHI ++A+LIGPEGG+H +EKE LHSLPFVTP+SLGPRILR+DTAAVAA+ALVQ+ 
Sbjct: 179 IQAIAHIVHMAVLIGPEGGFHPKEKEKLHSLPFVTPISLGPRILRADTAAVAAIALVQST 238

Query: 241 CGDWY 245
           CGDWY
Sbjct: 239 CGDWY 243


>gi|254720129|ref|ZP_05181940.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. 83/13]
          Length = 248

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/245 (47%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTDRIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|319405184|emb|CBI78789.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 247

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/247 (50%), Positives = 158/247 (63%), Gaps = 6/247 (2%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+ +
Sbjct: 1   MRANYKLKRLFVRQLLALNEEIVIEGQQASYLVHVLRMKEGTEILLFNGQDGEWLAKLIF 60

Query: 61  VGKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K I   ++ +Q R QT  SD+ Y F+P+K  RLDYMIQK+VEMG+  + PVIT++TQ 
Sbjct: 61  IKKKIVVARLIHQERPQTTHSDLFYCFAPLKHMRLDYMIQKAVEMGVSVLYPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--S 177
           T  NM R+    I A+EQC IL+LP   P  +LE  L+NWD    + F DE   S N  S
Sbjct: 121 TRINMARIEANIIEASEQCGILSLPKCAPAVSLETFLENWDKTRALFFCDELNESYNPIS 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L K H    +    +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DTAAVAA+ LV
Sbjct: 181 LFKKHGTNPL---GVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLV 237

Query: 238 QAICGDW 244
            A  GDW
Sbjct: 238 NATMGDW 244


>gi|265985135|ref|ZP_06097870.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839033|ref|ZP_07471853.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|264663727|gb|EEZ33988.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405856|gb|EFM62115.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 242

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 156/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      D
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQAVLGDW 238


>gi|49473945|ref|YP_031987.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse]
 gi|49239448|emb|CAF25798.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse]
          Length = 244

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 155/247 (62%), Gaps = 6/247 (2%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I+  LKRLF+  PL +  + K  G +  YL HVLRM+EG  ILLFNG+DGEWL+K+  
Sbjct: 1   MHINYKLKRLFIRQPLVLNEEIKIEGQKASYLIHVLRMQEGAEILLFNGQDGEWLAKLIT 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  K+ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKRFVVVKLIHQERLQTAPSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  N  R+    + A+EQC IL+LP   P  +L  LL  WD    + F DE     N L 
Sbjct: 121 TRINRTRMEANVVEASEQCGILSLPECVPAVSLVELLACWDETQPLFFCDEAHKLHNPLP 180

Query: 180 --KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             K H +  +P V  LIGPEGG+  EE+  L    FV P+ LGPRILR+DTAAV A+AL+
Sbjct: 181 LLKKHEMT-VPGV--LIGPEGGFSKEERSFLKKHSFVIPIPLGPRILRADTAAVVALALL 237

Query: 238 QAICGDW 244
            A  GDW
Sbjct: 238 NATVGDW 244


>gi|325292039|ref|YP_004277903.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3]
 gi|325059892|gb|ADY63583.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3]
          Length = 261

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 169/245 (68%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV+ PL      +A+ +Q++YLA+VLRM +G  ILLFNG+DGEW +++S+
Sbjct: 17  MRANFRMQRLFVETPLVAGAAQEATTEQFNYLANVLRMTDGAEILLFNGRDGEWKARLSF 76

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q+R Q   SD+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 77  PSRKKITLIPLEQTRPQPSASDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 136

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
             +N +++R   I AAEQC IL+LP +  P  L+ +L+ W  + +I++ DE    +N L 
Sbjct: 137 KIHNTEKLRANAIEAAEQCGILSLPDVAEPVKLKDMLETWPRDRRIIYCDEGDAGQNPLP 196

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L +I     +A+L+GPEGG+  EE+E L SL FVTP+ LGPRILR+DTAAVAA+A++QA
Sbjct: 197 VLQSIKER-KIALLVGPEGGFSEEERELLRSLAFVTPIPLGPRILRADTAAVAALAVIQA 255

Query: 240 ICGDW 244
             GDW
Sbjct: 256 SIGDW 260


>gi|148253212|ref|YP_001237797.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. BTAi1]
 gi|146405385|gb|ABQ33891.1| hypothetical protein BBta_1682 [Bradyrhizobium sp. BTAi1]
          Length = 250

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 105/236 (44%), Positives = 150/236 (63%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL      +   DQ +YL +VLR+  G  +L+FNG+DGEW   I    +     
Sbjct: 10  RLYVDAPLQHGAHVELDRDQSNYLGNVLRLGAGGRVLVFNGRDGEWQGLIGGRKRPDSLT 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +E+++R Q + +D+ Y+F+P+K  RLDYM+QK+VEMG+ ++ PVITR+TQ +  N +R+R
Sbjct: 70  IEHRTRPQDRLADLAYVFAPLKHARLDYMVQKAVEMGVSSLAPVITRHTQVSRVNGERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I AAEQC IL+L  +  P +LE  L     +  +VF DE     + L+ L   +   
Sbjct: 130 ANVIEAAEQCGILSLAEVREPVSLERFLAQRPPDRLLVFCDEAADVADPLQALRGGSDYA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +LIGPEGG+ SEE+E L   P V  ++LGPRILR+DTA VAA+AL+QA  GDW
Sbjct: 190 GIDLLIGPEGGFASEERELLLRQPLVLRVALGPRILRADTAGVAALALIQATLGDW 245


>gi|121602013|ref|YP_988622.1| hypothetical protein BARBAKC583_0300 [Bartonella bacilliformis
           KC583]
 gi|120614190|gb|ABM44791.1| conserved hypothetical protein TIGR00046 [Bartonella bacilliformis
           KC583]
          Length = 247

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 158/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +   +RLF+  PL +  +    G Q  YL HVLRM+EG  ILLFNG DGEWL+++  
Sbjct: 1   MRANYKFQRLFIQQPLVLNAEVIIEGSQASYLIHVLRMREGARILLFNGCDGEWLAELIT 60

Query: 61  VGKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K I   ++ +Q R QT +SD+ Y F+PIK+ RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKKIVVVRIIHQERVQTVRSDLVYCFAPIKSARLDYMVQKAVEMGVSVLQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+L    P  +LE LL +WD    + F DE+    N L 
Sbjct: 121 TRINMARIEANIIEASEQCGILSLSECAPTVSLEALLTSWDEARPLFFCDESHEFHNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L     +P V +LIGPEGG+  EE+  L   PFV P+SLGPRILR+DTAAVAA+A++  
Sbjct: 181 LLKKYRAMP-VGVLIGPEGGFSEEERILLKKYPFVVPISLGPRILRADTAAVAALAIINT 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TVGDW 244


>gi|319898419|ref|YP_004158512.1| hypothetical protein BARCL_0241 [Bartonella clarridgeiae 73]
 gi|319402383|emb|CBI75922.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 240

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 144/229 (62%), Gaps = 2/229 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+++  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+++
Sbjct: 1   MRVNYKLKRLFVRQLLALNKEIVIEGQQASYLMHVLRMKEGAKILLFNGQDGEWLAKLTF 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++  Q R QTK SD+ Y F+P+K  RLDYMIQK+VEMG   + P+IT YTQ 
Sbjct: 61  IKKKFVVVRLINQERLQTKSSDLFYCFAPLKYMRLDYMIQKAVEMGASVLHPIITHYTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I AAEQC IL+LP   P   L+  L+NWD    + F DE   S N++ 
Sbjct: 121 TRINMARIEANIIEAAEQCGILSLPKCAPAVPLKTFLENWDETHALFFCDELSESYNTIP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                   P + +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DT
Sbjct: 181 LFKKHRTTP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADT 228


>gi|256111326|ref|ZP_05452352.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 3
           str. Ether]
 gi|265992832|ref|ZP_06105389.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262763702|gb|EEZ09734.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 248

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 160/245 (65%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP  +     +  L  WD + +++F DE   S++ L 
Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCWEALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|239833512|ref|ZP_04681840.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
 gi|239821575|gb|EEQ93144.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
          Length = 248

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L   +Q + +    HYL HVLR+KEGD IL FNG+DGEW S++  
Sbjct: 1   MRANYKMQRLYVENDLQSGSQIEVASQAAHYLTHVLRLKEGDEILAFNGRDGEWKSRLRP 60

Query: 61  VGKSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK   F   + Q+R Q   SD+ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGKKRLFLEPFDQTRPQPPASDLIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR+R   I AAEQC +L+LP        +  ++ WD    ++F DE   S++ L 
Sbjct: 121 PKLGTDRIRVNAIEAAEQCGVLSLPACRETIRFDRFIEQWDETRHLIFCDEGHESDDPLT 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L A+   P  A+LIGPEGG+  +E++TL  LP+VT + LGPRILR+DTAAVAAMALVQ+
Sbjct: 181 ILQAMKPGP-AALLIGPEGGFSEDERQTLRRLPYVTAIPLGPRILRADTAAVAAMALVQS 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|306845979|ref|ZP_07478546.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|306273614|gb|EFM55459.1| conserved hypothetical protein [Brucella sp. BO1]
          Length = 242

 Score =  215 bits (548), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELQAGVSFDAEAQAAHYLAHVLRMKEGDKVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      D
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|17988874|ref|NP_541507.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1
           str. 16M]
 gi|256043637|ref|ZP_05446562.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256262333|ref|ZP_05464865.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260564827|ref|ZP_05835312.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990057|ref|ZP_06102614.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17984700|gb|AAL53771.1| surface protein [Brucella melitensis bv. 1 str. 16M]
 gi|260152470|gb|EEW87563.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000726|gb|EEZ13416.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092061|gb|EEZ16358.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
          Length = 248

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|229007176|ref|NP_353680.3| hypothetical protein Atu0657 [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 169/245 (68%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLF++  L      +A+G+Q++YLA+VLRM +G  ILLFNG+DGEW +K+S+
Sbjct: 1   MRANFRMQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSF 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q+R Q   +++ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKKISLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
             +N +++R   I AAEQC IL+LP +  P  L+ +L+ W  + +I++ DE    +N L 
Sbjct: 121 KIHNSEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L A+     +A+L+GPEGG+  EE+  L SL FVTP+ LGPRILR+DTAAVAA+A++QA
Sbjct: 181 ILQAVKER-KIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VIGDW 244


>gi|254699975|ref|ZP_05161803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 5 str.
           513]
 gi|254710992|ref|ZP_05172803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis
           B2/94]
 gi|254712536|ref|ZP_05174347.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M644/93/1]
 gi|254715608|ref|ZP_05177419.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M13/05/1]
 gi|256029374|ref|ZP_05442988.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis
           M292/94/1]
 gi|256059062|ref|ZP_05449271.1| 16S ribosomal RNA methyltransferase RsmE [Brucella neotomae 5K33]
 gi|256157566|ref|ZP_05455484.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M490/95/1]
 gi|256253459|ref|ZP_05458995.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti B1/94]
 gi|260167538|ref|ZP_05754349.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. F5/99]
          Length = 248

 Score =  214 bits (545), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|227820965|ref|YP_002824935.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium fredii
           NGR234]
 gi|227339964|gb|ACP24182.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 165/245 (67%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV+ PL    + +A+ DQ++YL +VLR  EG +IL+FNG+DGEW +++S 
Sbjct: 1   MRANFRMQRLFVESPLHAGARHEATKDQFNYLINVLRFGEGSSILVFNGRDGEWRAELSL 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K +      Q+R Q   SD+ Y+F+P+KT RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKQLVLTAVEQTRPQPAPSDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+DR+R     AAEQC +L +P +  P  LE LL NW    +I+F DE   S+N L 
Sbjct: 121 KLGNLDRLRANVTEAAEQCGVLGIPSVETPRKLEELLANWPRERRIIFCDEGNESQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  I+    +A+LIGPEGG+   E+  LHSL FVT + LGPRILR+DTAAVAA+AL+QA
Sbjct: 181 ILGGISER-RLALLIGPEGGFSEAERVLLHSLDFVTAVPLGPRILRADTAAVAALALIQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TLGDW 244


>gi|229597125|ref|YP_001622546.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis ATCC 23445]
          Length = 248

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLELGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|326410911|gb|ADZ67975.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M28]
 gi|326554202|gb|ADZ88841.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis
           M5-90]
          Length = 285

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 38  MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 98  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 157

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 276

Query: 240 ICGDW 244
           + GDW
Sbjct: 277 VLGDW 281


>gi|240137404|ref|YP_002961875.1| hypothetical protein MexAM1_META1p0669 [Methylobacterium extorquens
           AM1]
 gi|240007372|gb|ACS38598.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 250

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW ++I   G KS   
Sbjct: 10  RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSADL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR+
Sbjct: 70  RVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184
           +   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L      
Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVAALRGAADP 189

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           A+ P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 190 ANPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|148558128|ref|YP_001257708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ovis ATCC 25840]
 gi|225629236|ref|ZP_03787269.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|148369413|gb|ABQ62285.1| conserved hypothetical protein TIGR00046 [Brucella ovis ATCC 25840]
 gi|225615732|gb|EEH12781.1| conserved hypothetical protein [Brucella ceti str. Cudo]
          Length = 285

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 38  MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 98  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 158 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 276

Query: 240 ICGDW 244
           + GDW
Sbjct: 277 VLGDW 281


>gi|218528889|ref|YP_002419705.1| hypothetical protein Mchl_0859 [Methylobacterium chloromethanicum
           CM4]
 gi|218521192|gb|ACK81777.1| protein of unknown function DUF558 [Methylobacterium
           chloromethanicum CM4]
          Length = 250

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 148/239 (61%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW ++I   G KS   
Sbjct: 10  RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSADL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR+
Sbjct: 70  RVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184
           +   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L      
Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEEASVTDPVAALRGAADP 189

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           A  P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 190 ASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|188580094|ref|YP_001923539.1| hypothetical protein Mpop_0826 [Methylobacterium populi BJ001]
 gi|179343592|gb|ACB79004.1| protein of unknown function DUF558 [Methylobacterium populi BJ001]
          Length = 250

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW S+I   G KS   
Sbjct: 10  RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRSEIVPQGRKSADL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+R Q   SD+ Y+F+P+KT RLDYM QK+VEMG G ++PV TR+TQ     +DR+
Sbjct: 70  RVVAQTRPQPAPSDLHYLFAPLKTGRLDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184
           +   I AAEQC IL +P I  P  L   L   D    +VF DE     + +  L      
Sbjct: 130 QANAIEAAEQCGILAVPEIGEPDRLPACLAALDPGRLLVFCDEDAPVTDPVAALRGAADP 189

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           A  P +A+L+GPEGG+H EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 190 ADPPPLAVLVGPEGGFHPEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|306841708|ref|ZP_07474395.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306288238|gb|EFM59622.1| conserved hypothetical protein [Brucella sp. BO2]
          Length = 242

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      D
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQVPRLGTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L LP        +     WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLALPDCREALRFDRFRDQWDTSRRLIFCDEGHESDDPLSILAGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|225686530|ref|YP_002734502.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis ATCC
           23457]
 gi|225642635|gb|ACO02548.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
          Length = 242

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQALRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|49475195|ref|YP_033236.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1]
 gi|49238000|emb|CAF27205.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1]
          Length = 247

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+  PL I  + K  G Q  Y+ HVLRM+EG  ILLFNG+DGEWL+K+  
Sbjct: 1   MRINYKLKRLFIRQPLVINEKIKIEGPQAFYIVHVLRMQEGAEILLFNGQDGEWLAKLIT 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++ +Q R QT  S++ Y F+P+KT RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKKFVVVQLIHQERFQTALSNLIYCFAPLKTARLDYMVQKAVEMGVSVLQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+ +  + A+EQC IL+LP   P  +L  LL  WD    + F DET  S N L 
Sbjct: 121 TRINMARMESNVVEASEQCGILSLPECVPAVSLAELLARWDETQPLFFCDETHKSHNPL- 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L     +    ILIGPEGG+  EE+  L   PFV  + LGPRILR+DTAAVAA+AL+ A
Sbjct: 180 PLFKKREMLAPGILIGPEGGFSQEERSFLKKHPFVISIPLGPRILRADTAAVAALALLNA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TIGDW 244


>gi|294853463|ref|ZP_06794135.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL
           07-0026]
 gi|294819118|gb|EFG36118.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL
           07-0026]
          Length = 242

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAVHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|159139721|gb|AAK86465.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 239

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 166/239 (69%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RLF++  L      +A+G+Q++YLA+VLRM +G  ILLFNG+DGEW +K+S+   K I
Sbjct: 1   MQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
                 Q+R Q   +++ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q   +N +
Sbjct: 61  SLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNSE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           ++R   I AAEQC IL+LP +  P  L+ +L+ W  + +I++ DE    +N L  L A+ 
Sbjct: 121 KLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVK 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               +A+L+GPEGG+  EE+  L SL FVTP+ LGPRILR+DTAAVAA+A++QA+ GDW
Sbjct: 181 ER-KIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQAVIGDW 238


>gi|254705760|ref|ZP_05167588.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis
           M163/99/10]
          Length = 248

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRXPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|256015526|ref|YP_003105535.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915]
 gi|261217356|ref|ZP_05931637.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261220586|ref|ZP_05934867.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261318573|ref|ZP_05957770.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261320229|ref|ZP_05959426.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261323007|ref|ZP_05962204.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261750457|ref|ZP_05994166.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261756957|ref|ZP_06000666.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265986373|ref|ZP_06098930.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996067|ref|ZP_06108624.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|255998186|gb|ACU49873.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915]
 gi|260919170|gb|EEX85823.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260922445|gb|EEX89013.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292919|gb|EEX96415.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261297796|gb|EEY01293.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261298987|gb|EEY02484.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261736941|gb|EEY24937.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261740210|gb|EEY28136.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|262550364|gb|EEZ06525.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264658570|gb|EEZ28831.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 242

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|229220845|ref|YP_223253.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 1
           str. 9-941]
 gi|229358031|ref|YP_418671.2| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis
           biovar Abortus 2308]
 gi|229597252|ref|YP_001932396.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus S19]
 gi|254690902|ref|ZP_05154156.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 6
           str. 870]
 gi|254695788|ref|ZP_05157616.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 3
           str. Tulya]
 gi|254698683|ref|ZP_05160511.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732130|ref|ZP_05190708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 4
           str. 292]
 gi|256256087|ref|ZP_05461623.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 9
           str. C68]
 gi|260544638|ref|ZP_05820459.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260097909|gb|EEW81783.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
          Length = 248

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|254559584|ref|YP_003066679.1| hypothetical protein METDI1041 [Methylobacterium extorquens DM4]
 gi|254266862|emb|CAX22661.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 250

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW +++   G KS   
Sbjct: 10  RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAELVPQGRKSADL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR+
Sbjct: 70  RVVVQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184
           +   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L      
Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPGCLDALEANRLLVFCDEDASVTDPVAALRGAADP 189

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           A+ P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 190 ANPPPLAVLVGPEGGFHAEERALIAARPNTVVLSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|163675614|gb|ABY39724.1| conserved hypothetical protein [Brucella suis ATCC 23445]
          Length = 242

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 LGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|237816954|ref|ZP_04595946.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|297249441|ref|ZP_06933142.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus
           bv. 5 str. B3196]
 gi|237787767|gb|EEP61983.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|297173310|gb|EFH32674.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus
           bv. 5 str. B3196]
          Length = 285

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 38  MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 98  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMALVQA 276

Query: 240 ICGDW 244
           + GDW
Sbjct: 277 VLGDW 281


>gi|163850332|ref|YP_001638375.1| hypothetical protein Mext_0899 [Methylobacterium extorquens PA1]
 gi|163661937|gb|ABY29304.1| protein of unknown function DUF558 [Methylobacterium extorquens
           PA1]
          Length = 250

 Score =  211 bits (537), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW ++I   G KS   
Sbjct: 10  RLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSADL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR+
Sbjct: 70  RVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH- 186
           +   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L   A+ 
Sbjct: 130 QANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVVALRGAANP 189

Query: 187 --IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ G+
Sbjct: 190 ASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGN 248


>gi|153010322|ref|YP_001371536.1| hypothetical protein Oant_2999 [Ochrobactrum anthropi ATCC 49188]
 gi|151562210|gb|ABS15707.1| protein of unknown function DUF558 [Ochrobactrum anthropi ATCC
           49188]
          Length = 248

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L    Q + +    HYL HVLR+K+GD IL FNG+ GEW S++  
Sbjct: 1   MRANYKMQRLYVENDLDDGDQIEVAPQAAHYLTHVLRLKDGDEILAFNGRHGEWKSRLKP 60

Query: 61  VGKSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK   F + + Q+R Q   SD+ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGKKRLFLMPFEQTRPQPLASDLVYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR++   I AAEQC +L++P        +  ++ WD +  ++F DE   S++ L 
Sbjct: 121 PRLGADRIKANAIEAAEQCGVLSIPECCEAIRFDRFIEQWDKSRHLIFCDEGYESDDPLT 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +A  P VA+LIGPEGG+  +E++TL +LPFVT + LGPRILR+DTAAVAAMALVQ+
Sbjct: 181 ILQKMAPGP-VALLIGPEGGFSEDERQTLRNLPFVTAIPLGPRILRADTAAVAAMALVQS 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|75676748|ref|YP_319169.1| hypothetical protein Nwi_2564 [Nitrobacter winogradskyi Nb-255]
 gi|74421618|gb|ABA05817.1| Conserved hypothetical protein 46 [Nitrobacter winogradskyi Nb-255]
          Length = 257

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 146/237 (61%), Gaps = 1/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL    +   + +Q +YL +VLR+  G N+L+FNG+DGEW + IS   +    +
Sbjct: 12  RLYVDAPLAAGNRVPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAISGRKRPEHLE 71

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +   +R Q    DV Y F+P+K  RLDYM+QK+VEMG  A++PV+TR+TQ    N +R+R
Sbjct: 72  IVAATRKQDHLRDVHYAFAPLKHARLDYMVQKAVEMGASALQPVLTRFTQVGRVNGERMR 131

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I AAEQC IL+L  +  P  L+  L        +VF DE   + N +  L  +  + 
Sbjct: 132 ANVIEAAEQCGILSLAAVEEPAQLDRWLGRRAGERLLVFCDEAASTANPVRALETVRSVA 191

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +L+GPEGG+   E+E L + P +  LSLGPRILR+DTAAVA +ALVQ + GDW
Sbjct: 192 RGIDVLVGPEGGFADNERENLLNQPNILRLSLGPRILRADTAAVAVLALVQTVLGDW 248


>gi|254473523|ref|ZP_05086919.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062]
 gi|211957235|gb|EEA92439.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062]
          Length = 242

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 5/243 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RLFVD  L      +A   Q +YL +VLRMKEG  +L+FNGK GEW ++I   G KS 
Sbjct: 1   MQRLFVDQELRAGLHLEADRAQANYLLNVLRMKEGGEVLVFNGKHGEWRAQILPTGRKSC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
              V  Q R QT   D+ Y+F+P+K  RLDYM+QK+VEMG G +RPVIT++TQN    ++
Sbjct: 61  ELIVTEQLREQTPTPDLDYLFAPLKLARLDYMVQKAVEMGAGRLRPVITQFTQNPKIKLE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLH 182
           R+ +  + A EQC +L++P +  P  ++ LL  W+    + QI+F DE  G+ N LE L 
Sbjct: 121 RMESNALEACEQCGVLSVPSVLEPVQIKKLLSTWEQEEGDRQIIFCDEGHGTHNPLEALK 180

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +   P +A+LIGPEGG+  EE+  LHS PFV  + LGPRILR+DTAAVAA+A+VQA  G
Sbjct: 181 DVPKAP-LAVLIGPEGGFSEEERALLHSKPFVHAIPLGPRILRADTAAVAALAVVQAKLG 239

Query: 243 DWY 245
           DW+
Sbjct: 240 DWF 242


>gi|319408122|emb|CBI81775.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 247

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+++   +RLF+  PL +  + +  G Q  YL HVLRMKEG  ILLFNG+DGEWL+KI+ 
Sbjct: 1   MRVNYKFQRLFIQQPLSLNREIEIEGAQVSYLVHVLRMKEGAQILLFNGQDGEWLAKITA 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++ +Q+R QT  SD+ Y F+P+K  RLDYM+QK VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKKFVVVQLIHQTRPQTTCSDLIYCFAPLKHARLDYMVQKVVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +  NM R++   I AAEQC IL+LP   P  +L+ LL +WD    + F DE+   +N L 
Sbjct: 121 SRINMARIKANIIEAAEQCGILSLPECLPAVSLKTLLAHWDKTHSLFFCDESHEIQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L     +P + +LIGPEGG+  EE+  L    FV  +SLGPRILR+DTAAVAA+AL+  
Sbjct: 181 LLKKHGTVP-LGVLIGPEGGFSEEEQVLLRKHSFVISISLGPRILRADTAAVAALALINT 239

Query: 240 ICGDW 244
               W
Sbjct: 240 TIEAW 244


>gi|241203235|ref|YP_002974331.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857125|gb|ACS54792.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 164/245 (66%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ DQ++YLA+VLRM++G  ILLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLTRGAGVEANADQFNYLANVLRMEDGGEILLFNGRDGEWKATLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q +  D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   I AAEQC IL +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KVTNLDKLRANVIEAAEQCGILGIPDVAEPVRLLDLLDRWPSERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|209548049|ref|YP_002279966.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533805|gb|ACI53740.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 164/245 (66%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ DQ++YLA+VLRM+EG  +LLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLSSGAALEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I+     ++R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRIQLTAIEETRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|144898953|emb|CAM75817.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 245

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 151/237 (63%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV   L   +      DQ HYLA+V+R+K G+++ LFNG+DGEWL ++  V K S+  
Sbjct: 3   RLFVANDLSADSLIGLDKDQSHYLANVMRVKAGEDVALFNGRDGEWLGRLDKVAKASVTL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V+ QSR QT + D+  + +PIK + +D + +K+ E+G+ A+ PV T  T  +  N DR+
Sbjct: 63  QVQSQSRPQTPEPDLWLLAAPIKKDCIDLVAEKATELGISALWPVFTHRTVMSRVNTDRL 122

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               + AAEQC+ L++P +  PT L   L  WD    +VF DE+ G     + LH++   
Sbjct: 123 AANMVEAAEQCERLSVPEMREPTDLAKALAGWDAARPLVFLDESGGGAPITQALHSLQPG 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P +A+L GPEGG+   E+  L  LPF  P+SLGPRILR++TAA+AA+++VQA+ GDW
Sbjct: 183 P-LAVLTGPEGGFDDSERAMLARLPFAVPVSLGPRILRAETAAIAALSVVQALLGDW 238


>gi|240850045|ref|YP_002971438.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup]
 gi|240267168|gb|ACS50756.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup]
          Length = 247

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/245 (49%), Positives = 155/245 (63%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+   L +  + K  G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+  
Sbjct: 1   MRINYKLKRLFIRQTLALNEEIKIEGAQASYLVHVLRMKEGAEILLFNGQDGEWLAKLII 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           V K  +  ++ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP      +L  LL  WD    + F DE   S N L 
Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLARWDETQPLFFCDEEHKSHNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                  +    ILIGPEGG+  EE+  L   PFV P+SLGPRILR+DTAAVAA+AL+ A
Sbjct: 181 SFKK-RDVTTPGILIGPEGGFSEEERSFLKKHPFVVPISLGPRILRADTAAVAALALLNA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TVGDW 244


>gi|260756485|ref|ZP_05868833.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260759917|ref|ZP_05872265.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763155|ref|ZP_05875487.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882306|ref|ZP_05893920.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216206|ref|ZP_05930487.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|62197593|gb|AAX75892.1| conserved hypothetical protein TIGR00046 [Brucella abortus bv. 1
           str. 9-941]
 gi|82939654|emb|CAJ12643.1| Conserved hypothetical protein 46:Protein of unknown function
           DUF558 [Brucella melitensis biovar Abortus 2308]
 gi|189021229|gb|ACD73950.1| Conserved hypothetical protein 46 [Brucella abortus S19]
 gi|260670235|gb|EEX57175.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673576|gb|EEX60397.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676593|gb|EEX63414.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260871834|gb|EEX78903.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917813|gb|EEX84674.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 242

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVLRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|229107039|ref|NP_699939.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis 1330]
          Length = 248

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++R +V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  +LDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|229597123|ref|YP_001609040.2| 16S ribosomal RNA methyltransferase RsmE [Bartonella tribocorum CIP
           105476]
          Length = 247

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+   L +  + K  G Q  YL HVLRMKEG  IL+FNG+DGEWL+K+  
Sbjct: 1   MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           V K  +  ++ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG   ++PVIT +TQ 
Sbjct: 61  VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP      +L  LL+ WD    + F DE   S N L 
Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                 ++    +LIGPEGG+  EE+  L   PFV P+SLGPRILR+DTAAVAA+AL+ A
Sbjct: 181 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILRADTAAVAALALLNA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TVGDW 244


>gi|300024089|ref|YP_003756700.1| hypothetical protein Hden_2583 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525910|gb|ADJ24379.1| protein of unknown function DUF558 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 248

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 2/238 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66
           +RLF+   L      + +  Q HYL +VLR++ G  +L+FNG+DGEW  S I    ++  
Sbjct: 9   ERLFIADDLAAGVSVELAQQQAHYLTNVLRLRPGAKLLVFNGRDGEWQASLIESRKRTTV 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             +E Q+R Q +  D+ Y+F+P+K +RLDYM+QK+ EMG+  +RPVIT  T     N +R
Sbjct: 69  LGIEEQTRPQEQGPDIDYLFAPLKRSRLDYMVQKATEMGVRRLRPVITERTIAERVNSER 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I AAEQC IL +P + PP +LE  L  WD    +++ DE   + + +  L  +  
Sbjct: 129 MLANAIEAAEQCGILRVPEVEPPVSLETALAAWDPARALIYCDEHETAADPIATLRKVPA 188

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P VA+LIGPEGG+ + E+  L +  +V PL LGPRI+R+DTAAVAA+ LV A+ GDW
Sbjct: 189 GP-VAVLIGPEGGFSNGERSRLLANSYVVPLPLGPRIMRADTAAVAALTLVNAVLGDW 245


>gi|116250629|ref|YP_766467.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255277|emb|CAK06352.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 245

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/245 (45%), Positives = 164/245 (66%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ DQ++YL +VLRM+EG  ILLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLSSGAVVEANADQFNYLGNVLRMEEGAEILLFNGRDGEWKATLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q +  D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC IL +P +  P  L  LL +W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGILGIPDVAEPVRLLDLLDHWPSERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|114705941|ref|ZP_01438844.1| surface protein [Fulvimarina pelagi HTCC2506]
 gi|114538787|gb|EAU41908.1| surface protein [Fulvimarina pelagi HTCC2506]
          Length = 295

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/237 (43%), Positives = 146/237 (61%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RLFV+  +   T   A+  Q +YL +VLR  EGD++LLFNG+DGEW +++    K  +  
Sbjct: 56  RLFVEERITADTPIAATSPQANYLLNVLRKDEGDSVLLFNGQDGEWRAELRKASKKKLDL 115

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               + R Q    D+ Y F+P+K  RLDYM+QK+VEMG G ++PV+T  TQN     D++
Sbjct: 116 FPVAKVRVQQPPYDLIYCFAPLKVGRLDYMVQKAVEMGAGILQPVLTHRTQNHRVRTDKI 175

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC IL +P    P   + LL NW  +  +VF DE   + + ++ L  +   
Sbjct: 176 RANAIEAAEQCGILAIPECREPVKFDDLLSNWSSSIPLVFCDEKMDAASPIDALRELGD- 234

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               ++IGPEGG+  +E+ +L    F T +SLGPRILR+DTAAVAA+ +VQA+CGDW
Sbjct: 235 GRKGLIIGPEGGFSQDERVSLLGAEFTTAISLGPRILRADTAAVAALTMVQAVCGDW 291


>gi|110632733|ref|YP_672941.1| hypothetical protein Meso_0372 [Mesorhizobium sp. BNC1]
 gi|110283717|gb|ABG61776.1| protein of unknown function DUF558 [Chelativorans sp. BNC1]
          Length = 248

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/245 (44%), Positives = 160/245 (65%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL++   L    + + + +Q HYL +VLRM+ G  +L+FNG+ GEWL+++  
Sbjct: 1   MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKE 60

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K S    V   +R QT Q D+ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  ISKKSALLAVRELTREQTPQPDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQI 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR++   I AAEQC IL++P +  P  L+ LL  W+   ++VF DE    +N   
Sbjct: 121 PKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRWEEGRRLVFCDEDAPGQNPFP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +L A+A    + +L+GPEGG+   E+ TL SL FV P+ LGPRILR+DTAAVAA+A++QA
Sbjct: 181 RLSALAG-ERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILRADTAAVAALAILQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AAGDW 244


>gi|161017487|emb|CAK01045.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 277

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+   L +  + K  G Q  YL HVLRMKEG  IL+FNG+DGEWL+K+  
Sbjct: 31  MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 90

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           V K  +  ++ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG   ++PVIT +TQ 
Sbjct: 91  VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 150

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP      +L  LL+ WD    + F DE   S N L 
Sbjct: 151 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 210

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                 ++    +LIGPEGG+  EE+  L   PFV P+SLGPRILR+DTAAVAA+AL+ A
Sbjct: 211 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILRADTAAVAALALLNA 269

Query: 240 ICGDW 244
             GDW
Sbjct: 270 TVGDW 274


>gi|86356450|ref|YP_468342.1| hypothetical protein RHE_CH00804 [Rhizobium etli CFN 42]
 gi|86280552|gb|ABC89615.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 245

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/245 (45%), Positives = 161/245 (65%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV  PL      +A+ DQ++YLA+VLRM++G  ILLFNG+DGEW + +S+
Sbjct: 1   MRANFRMQRLFVYAPLSAGAAVEANADQFNYLANVLRMEDGAEILLFNGRDGEWKATLSF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I       +R Q    D+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEATRPQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGRLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLAIPEVAEPVKLSDLLDRWPSERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 VLAAIQER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|328545108|ref|YP_004305217.1| hypothetical protein SL003B_3491 [polymorphum gilvum SL003B-26A1]
 gi|326414850|gb|ADZ71913.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1]
          Length = 252

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 164/243 (67%), Gaps = 6/243 (2%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
           +RLF+   L    Q +A   Q +YL +VLR+ + D +L+FNG+DGEWL++I+  G K+  
Sbjct: 9   QRLFLRHGLADGGQVEADRAQANYLLNVLRLADDDRVLVFNGRDGEWLAEIAAAGRKACT 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            ++  ++R QT Q D+ Y+F+P+K  RLDYM+QK+VEMG GA+RPV+TR+T  +  N++R
Sbjct: 69  LRLVERTRPQTPQPDLHYLFAPLKHARLDYMVQKAVEMGAGALRPVMTRHTHASRINLER 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSENSLEKLHA 183
           +    + AAEQC +++LP +  P  L+ +L  W   D   +++F DE   S + L  L  
Sbjct: 129 MEANVVEAAEQCGVISLPDVRAPAALDAVLAAWPQADAGRRLLFCDEGEESHSPLPVLAR 188

Query: 184 IA-HIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +A   P+ +A+L+GPEGG+  EE+  L  LPFV P+ LGPRILR+DTAAVAA+A+VQA  
Sbjct: 189 LAGEGPSPLALLVGPEGGFSKEERALLRGLPFVVPIPLGPRILRADTAAVAALAVVQAAL 248

Query: 242 GDW 244
           GDW
Sbjct: 249 GDW 251


>gi|319782233|ref|YP_004141709.1| hypothetical protein Mesci_2516 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168121|gb|ADV11659.1| protein of unknown function DUF558 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 244

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 157/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   L    + +A   Q HYL HVLR+ EG  IL+FNG+DGEW + IS 
Sbjct: 1   MRANYKMQRLFVTDDLAPDIEFEAGQQQSHYLLHVLRLGEGAEILVFNGRDGEWSAAISA 60

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K ++R KV    R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ 
Sbjct: 61  KTKRAVRLKVSALQRPQPPLPDLVYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++DR+R   + AAEQC IL +P +      + LL  WD   +++F DE   + N L 
Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPQVREAEKFDRLLTGWDTERRLIFCDEDASTNNPLA 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L A+     + +L+GPEGG+  +E++ L +LPFVT + LGPRILR+DTAAVAA A++QA
Sbjct: 181 ALQAVKE-KKLGLLVGPEGGFSDDERKMLRALPFVTAIPLGPRILRADTAAVAAFAVMQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TVGDW 244


>gi|23464129|gb|AAN33944.1| conserved hypothetical protein TIGR00046 [Brucella suis 1330]
          Length = 242

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R +V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  +LDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 238


>gi|150395613|ref|YP_001326080.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium medicae
           WSM419]
 gi|150027128|gb|ABR59245.1| protein of unknown function DUF558 [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 169/246 (68%), Gaps = 4/246 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV+ PL      +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++IS 
Sbjct: 1   MRANFRMQRLFVESPLHNGASHQATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEISM 60

Query: 61  VGK--SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
             +  ++   VE Q+R Q    D+ Y+F+P+KT RLDY++QK+VEMG G ++PVIT++ Q
Sbjct: 61  PSRKQAVLVAVE-QTRPQPAPCDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVITQHVQ 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
               +++R+R   I AAEQC +L +P +  P  LE LL  W  + +IVF DE   S+N L
Sbjct: 120 GKIGSLERIRANAIEAAEQCGVLGIPAVEEPRRLEDLLAAWPRDRRIVFCDEGNESQNPL 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L+ +A    +A+LIGPEGG+   E++ L SL FVT + LGPRILR+DTAAVAAMA++Q
Sbjct: 180 PILNELAE-HRLALLIGPEGGFSETERDLLRSLDFVTAIPLGPRILRADTAAVAAMAVIQ 238

Query: 239 AICGDW 244
           A  GDW
Sbjct: 239 ATLGDW 244


>gi|260567973|ref|ZP_05838442.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 4 str. 40]
 gi|261753715|ref|ZP_05997424.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 3 str. 686]
 gi|260154638|gb|EEW89719.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 4 str. 40]
 gi|261743468|gb|EEY31394.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 3 str. 686]
          Length = 235

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 148/222 (66%), Gaps = 2/222 (0%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDV 82
           A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +  +   Q+R Q K S++
Sbjct: 11  AGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQPKPSEL 70

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            Y F+P+K  +LDYM+QK+VEMG G ++PVIT++TQ      +R+R   I AAEQC +L+
Sbjct: 71  IYCFAPLKQGQLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAEQCGVLS 130

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP        +  L  WD + +++F DE   S++ L  L  +   P+  +LIGPEGG+  
Sbjct: 131 LPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGPEGGFSE 189

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EE++ LH LPFVT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 190 EERQLLHRLPFVTAIPLGPRILRADTAAVAAMALVQAVLGDW 231


>gi|190890510|ref|YP_001977052.1| hypothetical protein RHECIAT_CH0000889 [Rhizobium etli CIAT 652]
 gi|190695789|gb|ACE89874.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 245

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 161/245 (65%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +AS +Q++YLA+VLRM+    ILLFNG+DGEW + +S+
Sbjct: 1   MRANFRMQRLFVDAPLSAGAVVEASAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEETRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 VLSAIRER-HLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|158330817|dbj|BAF88302.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
          Length = 283

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 2/238 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66
           +RLFV   L   T      +Q HY+A+V+R+     +L+FNG+DGEW  ++I    K +R
Sbjct: 42  QRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKKEVR 101

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             +  Q+R Q   + + Y F+P+K  RLDYM+QK+VEMG G + PV+T++TQ    N +R
Sbjct: 102 LSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVNGER 161

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I AAEQC ILT+P +  P  L   L     +  +VF DE     + L  L   A 
Sbjct: 162 MEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRPAAG 221

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P + +LIGPEGG+ ++E+  LH    V  ++LGPRILR+DTA VAA+ALVQA+CGDW
Sbjct: 222 GP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGDW 278


>gi|229595716|ref|YP_001525220.2| 16S ribosomal RNA methyltransferase RsmE [Azorhizobium caulinodans
           ORS 571]
          Length = 250

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 2/238 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66
           +RLFV   L   T      +Q HY+A+V+R+     +L+FNG+DGEW  ++I    K +R
Sbjct: 9   QRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKKEVR 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             +  Q+R Q   + + Y F+P+K  RLDYM+QK+VEMG G + PV+T++TQ    N +R
Sbjct: 69  LSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVNGER 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I AAEQC ILT+P +  P  L   L     +  +VF DE     + L  L   A 
Sbjct: 129 MEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRPAAG 188

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P + +LIGPEGG+ ++E+  LH    V  ++LGPRILR+DTA VAA+ALVQA+CGDW
Sbjct: 189 GP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGDW 245


>gi|85714212|ref|ZP_01045200.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A]
 gi|85698659|gb|EAQ36528.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A]
          Length = 256

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 1/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL    +   + +Q +YL +VLR+  G N+L+FNG+DGEW + I    +    +
Sbjct: 17  RLYVDAPLAAGCRIPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAIFGRKRLENLE 76

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +   +R Q +  DV+Y F+P+K  RLDYM+QK+VEMG+ A++P++TR+TQ    N +R+R
Sbjct: 77  IVAATRKQDQLPDVRYAFAPLKHARLDYMVQKAVEMGVCALQPLLTRFTQVGRVNGERMR 136

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I AAEQC IL+L  +  P +L+  L        +VF DE   + N L  L     + 
Sbjct: 137 ANVIEAAEQCGILSLAAVEEPASLDQWLGRRGPERLLVFCDEAASTANPLRTLEPARRVA 196

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +L+GPEGG+  +E+  L   P V  LSLGPRILR+DTAAVA +ALVQ + GDW
Sbjct: 197 QGIDVLVGPEGGFAEDERVNLLKQPNVLRLSLGPRILRADTAAVAVLALVQTVLGDW 253


>gi|260462657|ref|ZP_05810863.1| protein of unknown function DUF558 [Mesorhizobium opportunistum
           WSM2075]
 gi|259031563|gb|EEW32833.1| protein of unknown function DUF558 [Mesorhizobium opportunistum
           WSM2075]
          Length = 273

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 157/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   L    +  A   Q HYL HVLR+ EG  IL+FNG+DGEW + I+ 
Sbjct: 30  MRANYKMQRLFVPDDLAGDAEFDAGQQQSHYLMHVLRLGEGAEILVFNGRDGEWSAAIAA 89

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              +++R KV    R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ 
Sbjct: 90  KTKRAVRLKVLALQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 149

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++DR+R   + AAEQC IL +P +      E +L  WD   +++F DE   + N L 
Sbjct: 150 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERVLTGWDKGRRLIFCDEDASTNNPLP 209

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI     + +L+GPEGG+  EE++ L +LPFV+ + LGPRILR+DTAAVAA+A++QA
Sbjct: 210 ALQAIRE-KKLGLLVGPEGGFSDEERKMLRALPFVSAIPLGPRILRADTAAVAALAVIQA 268

Query: 240 ICGDW 244
             GDW
Sbjct: 269 SVGDW 273


>gi|327191156|gb|EGE58200.1| hypothetical protein RHECNPAF_3350022 [Rhizobium etli CNPAF512]
          Length = 245

 Score =  204 bits (519), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 161/245 (65%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ +Q++YLA+VLRM+    ILLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLSSGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q+R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEQTRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 VLSAIRE-KHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|307308472|ref|ZP_07588176.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C]
 gi|307319035|ref|ZP_07598466.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83]
 gi|306895449|gb|EFN26204.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83]
 gi|306901075|gb|EFN31683.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 112/246 (45%), Positives = 168/246 (68%), Gaps = 4/246 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLF++ PL    + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ 
Sbjct: 1   MRANFRMQRLFIENPLHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60

Query: 61  VGK--SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
             +  ++   VE Q+R Q    D+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q
Sbjct: 61  PSRKQAVLVAVE-QTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQ 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
               +++RVR   I AAEQC +L +P +  P  LE LL +W  + +IVF DE   S+N L
Sbjct: 120 GKIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPL 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L  IA    +A+LIGPEGG+   E++ L S  FVT + LGPRILR+DTAAVAAMA++Q
Sbjct: 180 PILEGIAER-RLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238

Query: 239 AICGDW 244
           A  GDW
Sbjct: 239 ATLGDW 244


>gi|90426187|ref|YP_534557.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris BisB18]
 gi|90108201|gb|ABD90238.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           BisB18]
          Length = 251

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 146/245 (59%), Gaps = 2/245 (0%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +I     RL+VD  L    Q   + +Q +YL +VLR+  G  +L+FNG+DGEW + I   
Sbjct: 3   QIEFRSPRLYVDADLSAGLQVPLTREQGNYLGNVLRLSAGAAVLVFNGRDGEWQAMIGAG 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +  R  +  ++R+Q    DV Y+F+P+K  RLDYM+QK++EMG  A++PV+TR+TQ T 
Sbjct: 63  KRVDRLDILSRARAQDGLPDVTYVFAPLKHARLDYMVQKAIEMGACALQPVLTRFTQVTR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            N +R+R   I AAEQC IL++  +  P  LE  L   D    +VF DE     + +  L
Sbjct: 123 VNTERMRANVIEAAEQCGILSIAAVEEPLKLERYLSTRDTGRLLVFCDEAAEVADPVAAL 182

Query: 182 HAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                  +  I  +IGPEGG+  EE+  L   P +  L+LGPRI+R+DTAAVAA+ LVQ 
Sbjct: 183 GGARERASAGIDVVIGPEGGFAEEERALLLRQPNILRLALGPRIMRADTAAVAALTLVQT 242

Query: 240 ICGDW 244
           + GDW
Sbjct: 243 VLGDW 247


>gi|222106772|ref|YP_002547563.1| hypothetical protein Avi_5780 [Agrobacterium vitis S4]
 gi|221737951|gb|ACM38847.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 245

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/245 (44%), Positives = 166/245 (67%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+VD  L        + +QY+YLA+VLR+ EG  +L+FNG+DGEW + +++
Sbjct: 1   MRANYKMQRLYVDAGLEAANPVATTPEQYNYLANVLRLTEGAEVLVFNGRDGEWKASLAF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I    + Q+R Q + SD+ ++F+P+K  R+DY++QK+VEMG GA++PV+T++ Q 
Sbjct: 61  PTRKRIALIPQSQTRPQPRPSDLTFLFAPLKVGRMDYLVQKAVEMGAGALQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              +++R++   I AAEQC IL++P + P   L+ LL+ W    +I+F DE   ++N + 
Sbjct: 121 RIGSIERLQANVIEAAEQCGILSVPKVAPLVKLKDLLETWPATHRIIFCDEDSATDNPMP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI     +A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA
Sbjct: 181 ALAAIEER-QLALLVGPEGGFSDEERSLLRSLGFVTAIPLGPRILRADTAAVAALAVVQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 SIGDW 244


>gi|229259630|ref|NP_107316.2| 16S ribosomal RNA methyltransferase RsmE [Mesorhizobium loti
           MAFF303099]
          Length = 244

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 158/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   L    +  A   Q HYL HVLR+ EG  ILLFNG+DGEW + I+ 
Sbjct: 1   MRANYKMQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAA 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K  +R +V+   R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ 
Sbjct: 61  KSKKAVRLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++DR+R   + AAEQC IL +P +      E LL  WD   ++VF DE   + N L 
Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L A+     +A+L+GPEGG+  +E++ L +LPFVT + LGPRILR+DTAAVAA+A++QA
Sbjct: 181 ALRAVKE-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILRADTAAVAALAVMQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TVGDW 244


>gi|118590628|ref|ZP_01548029.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614]
 gi|118436604|gb|EAV43244.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614]
          Length = 252

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/250 (44%), Positives = 165/250 (66%), Gaps = 8/250 (3%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           K   +++RLF+   L    + +A   Q +YL +VLR+K+GD +L+FNG DGEWL+KI   
Sbjct: 3   KYEFNMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDYVLVFNGTDGEWLAKIVSN 62

Query: 62  GK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G+     ++  ++R QT  +D+ Y+F+P+K  RLDYM+QK+VEMG G+++PV+T++TQ +
Sbjct: 63  GRRDCTLQLMERTREQTSANDLMYMFAPLKHARLDYMVQKAVEMGAGSLKPVLTQHTQAS 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSEN- 176
             N++R+    I AAEQC +L +P +  P  L  +L  W       +++F DE  G+ N 
Sbjct: 123 RINLERMEANVIEAAEQCGVLAVPEVLAPQPLADVLSVWAEAQPGRRLLFCDEAEGTNNP 182

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             SL ++      P +AILIGPEGG+  EE+  L SL FVTP+ LGPRILR+DTAAVAA+
Sbjct: 183 LLSLAQMKENGPQP-LAILIGPEGGFSEEERSLLRSLDFVTPIPLGPRILRADTAAVAAL 241

Query: 235 ALVQAICGDW 244
           A++QA  GDW
Sbjct: 242 AVLQATVGDW 251


>gi|222084972|ref|YP_002543501.1| hypothetical protein Arad_1026 [Agrobacterium radiobacter K84]
 gi|221722420|gb|ACM25576.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 162/245 (66%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   +      +A  +Q++YLA+VLRM++G  +L+FNG+DGEW ++IS+
Sbjct: 1   MRANFRMQRLFVVSDIKANAGIEADQEQFNYLANVLRMEDGAELLIFNGRDGEWKARISF 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q   SD+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKRILMTPIEETRPQPAPSDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D+VR   I AAEQC IL +P +  P  L  LL+ W    +I++ DE    +N L 
Sbjct: 121 KITNLDKVRANVIEAAEQCGILGIPDVAEPVKLADLLERWPRERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  I    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR+DTAAVAAMA++QA
Sbjct: 181 LLAKITE-KHLALLVGPEGGFSEEERALLRSLDFVTAIPLGPRILRADTAAVAAMAVIQA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 AIGDW 244


>gi|14026505|dbj|BAB53102.1| mll6903 [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 112/239 (46%), Positives = 155/239 (64%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++RLFV   L    +  A   Q HYL HVLR+ EG  ILLFNG+DGEW + I+   K  +
Sbjct: 1   MQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAAKSKKAV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           R +V+   R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ    ++D
Sbjct: 61  RLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQVAKPSID 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   + AAEQC IL +P +      E LL  WD   ++VF DE   + N L  L A+ 
Sbjct: 121 RLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLPALRAVK 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               +A+L+GPEGG+  +E++ L +LPFVT + LGPRILR+DTAAVAA+A++QA  GDW
Sbjct: 181 E-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILRADTAAVAALAVMQATVGDW 238


>gi|15964524|ref|NP_384877.1| hypothetical protein SMc00826 [Sinorhizobium meliloti 1021]
 gi|15073701|emb|CAC45343.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 167/246 (67%), Gaps = 4/246 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLF++  L    + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ 
Sbjct: 1   MRANFRMQRLFIENALHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60

Query: 61  VGK--SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
             +  ++   VE Q+R Q    D+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q
Sbjct: 61  PSRKQAVLVAVE-QTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQ 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
               +++RVR   I AAEQC +L +P +  P  LE LL +W  + +IVF DE   S+N L
Sbjct: 120 GKIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPL 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L  IA    +A+LIGPEGG+   E++ L S  FVT + LGPRILR+DTAAVAAMA++Q
Sbjct: 180 PILEGIAE-RRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238

Query: 239 AICGDW 244
           A  GDW
Sbjct: 239 ATLGDW 244


>gi|192289752|ref|YP_001990357.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris TIE-1]
 gi|192283501|gb|ACE99881.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           TIE-1]
          Length = 251

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 3/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD  L    Q     DQ +YL +VLR+  G  +L FNG+DGEW + I+   +    +
Sbjct: 10  RLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALE 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V  Q+R Q +  DV Y+F+P+K  RLDYM QK+VEMG G ++PV+T++TQ    N DR+R
Sbjct: 70  VAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
              I AAEQC IL+L  +  P  L+ FL    +    +VF DE     + +  L A    
Sbjct: 130 ANVIEAAEQCGILSLAEVGEPIGLDRFLASRANGERLLVFCDEDAEIADPVAALQAARDA 189

Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V +L+GPEGG+ +EE+  L   P +  L+LGPRI+R+DTAAVAA+ LVQA+ GDW
Sbjct: 190 AARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTLVQAVLGDW 248


>gi|39934226|ref|NP_946502.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris CGA009]
 gi|39648074|emb|CAE26594.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 251

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 3/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD  L    Q     DQ +YL +VLR+  G  +L FNG+DGEW + I+   +    +
Sbjct: 10  RLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGRKRPEALE 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V  Q+R Q +  DV Y+F+P+K  RLDYM QK+VEMG G ++PV+T++TQ    N DR+R
Sbjct: 70  VAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHRLNTDRMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
              I AAEQC IL+L  +  P  L+ FL    +    +VF DE     + +  L A    
Sbjct: 130 ANVIEAAEQCGILSLAEVGEPIGLDRFLAGRANGERLLVFCDEDAEIADPVAALQAARDA 189

Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V +L+GPEGG+ +EE+  L   P +  L+LGPRI+R+DTAAVAA+ LVQA+ GDW
Sbjct: 190 AARGVDLLVGPEGGFSTEERALLLKQPAILRLALGPRIMRADTAAVAALTLVQAVLGDW 248


>gi|170751754|ref|YP_001758014.1| hypothetical protein Mrad2831_5384 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658276|gb|ACB27331.1| protein of unknown function DUF558 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 250

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 135/220 (61%), Gaps = 4/220 (1%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIF 86
           Q +YL +VLR    D +L+FNG+ GEW + +   G K     V  Q+R QT+++D+ Y+F
Sbjct: 29  QANYLLNVLRRGPDDPVLVFNGRHGEWRAHLVQTGRKGADLHVAAQTRPQTERADLHYLF 88

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +P+K+ RLDY+ QK+VEMG G IRPVITR+TQ    N+DR+R   + AAEQC IL +P  
Sbjct: 89  APLKSARLDYLAQKAVEMGAGTIRPVITRFTQGDRVNIDRLRANAVEAAEQCGILAIPEC 148

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH---IPNVAILIGPEGGYHSE 203
             P  L   L        +VF DE     + +  L A       P +A+L+GPEGG+  E
Sbjct: 149 PEPERLPAALAGLAPGRLLVFCDEDAPVRDPVAALRAAGDPLAPPPLAVLVGPEGGFSEE 208

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E+  + + P    LSLGPRILR+DTAAVA + LVQA+ GD
Sbjct: 209 ERALILARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248


>gi|217979033|ref|YP_002363180.1| protein of unknown function DUF558 [Methylocella silvestris BL2]
 gi|217504409|gb|ACK51818.1| protein of unknown function DUF558 [Methylocella silvestris BL2]
          Length = 253

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 6/241 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD PL  + +      Q +YL + LR+K+G  IL FNG+DGEW ++I   G+ S   
Sbjct: 10  RLYVDAPLAPQARVSLEAPQVNYLRNALRLKDGAEILAFNGRDGEWRARIETEGRRSTVL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q R Q    D+ Y+F+P+K  RLDYM+QK+VEMG G +RPV+TR TQ    N+DR+
Sbjct: 70  AADQQLRPQPPPFDLHYLFAPLKHARLDYMVQKAVEMGAGQLRPVLTRRTQAERINLDRM 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC +L++  I  P  L+  L  W  +  +VF DE    ++ +  L A A  
Sbjct: 130 RANAIEAAEQCGVLSVAEIIAPIRLDAALAQWSPDRLLVFCDEDAPEQDPVAALRA-ARE 188

Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            N    +A+LIGPEGG+  +E++ L + P    LSLGPR+LR+DTAAVAA+ALVQA  GD
Sbjct: 189 SNPGGGLAVLIGPEGGFDEDERKALLAAPRTVRLSLGPRVLRADTAAVAALALVQASIGD 248

Query: 244 W 244
           W
Sbjct: 249 W 249


>gi|170740484|ref|YP_001769139.1| hypothetical protein M446_2244 [Methylobacterium sp. 4-46]
 gi|168194758|gb|ACA16705.1| protein of unknown function DUF558 [Methylobacterium sp. 4-46]
          Length = 265

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/248 (42%), Positives = 143/248 (57%), Gaps = 13/248 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLF+D P+           Q +YL  VLR  EGD +L+FNG+DGEW ++I   G K+   
Sbjct: 10  RLFLDVPMAEGVVHGLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWWAEIRPTGRKAGDL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  ++R QT+  D+ Y+F+P+K  RLDY+ QK+VEMG   IRPVITR TQ     +DR+
Sbjct: 70  VLRRRTRPQTEPGDLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186
           R   + AAEQC IL +P I     L   L   + +  +VF DE     + +  L   +A 
Sbjct: 130 RANAVEAAEQCGILAIPEIAEAAPLTEALAALEADRLLVFCDEDAPVRDPVAALRQGVAR 189

Query: 187 IPN-----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            P            +A++IGPEGG+  EE+  +   P    LSLGPRILR+DTAAVA +A
Sbjct: 190 PPAGAGRGGNVPLPLAVVIGPEGGFTPEERALILERPTTIRLSLGPRILRADTAAVAVLA 249

Query: 236 LVQAICGD 243
           LVQA+ GD
Sbjct: 250 LVQAVLGD 257


>gi|182679209|ref|YP_001833355.1| hypothetical protein Bind_2249 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635092|gb|ACB95866.1| protein of unknown function DUF558 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 250

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 143/238 (60%), Gaps = 6/238 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RL++D PL           Q HYL  VLR+  GD+IL+FNG++GEW + +   G K+++ 
Sbjct: 10  RLYLDQPLRAGGTVALDKSQAHYLCTVLRLVAGDHILVFNGREGEWRAALKESGRKTVQI 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   Q R+Q   +D+ Y+F+P+K  RLDYM QK+VEMG   ++P+ TR TQN   N++R+
Sbjct: 70  EPIEQVRTQEPDNDLHYLFAPLKHARLDYMAQKAVEMGASLLQPLFTRRTQNERINLERL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC ILTLP I     L+  L   D N  +VF DE       L  L      
Sbjct: 130 RANAIEAAEQCGILTLPEIAEAVKLDAYLARRDQNRVLVFCDEDAPPIGPLAALREALRP 189

Query: 188 PNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             VA     +LIGPEGG+ + E++ L S P    +SLGPRILR+DTAAVA +ALVQAI
Sbjct: 190 GGVACRGADVLIGPEGGFDATERDLLVSQPNHIRISLGPRILRADTAAVAVLALVQAI 247


>gi|312114482|ref|YP_004012078.1| hypothetical protein Rvan_1732 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219611|gb|ADP70979.1| protein of unknown function DUF558 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 242

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           ++R+FV   L    +      Q HYL +VLR+ EG  +L F+G  GEW +KI    KS  
Sbjct: 3   MQRIFVANKLDPDGEIALDTAQAHYLLNVLRLSEGAEVLTFDGTSGEWRAKIVKARKSAC 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             ++  + R QT  + + Y F+P+K  RLDYM+QK+VEMG   ++PVIT++T       D
Sbjct: 63  TIRLMEKVREQTAPTGIHYAFAPLKQARLDYMVQKAVEMGASLLQPVITQHTAVPRLGAD 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++   I AAEQC +LTLP I  P      L+ +D +  +VF DE     + L+ L A++
Sbjct: 123 RMKANAIEAAEQCGVLTLPEIKAPVKFAAFLQAFDKDRALVFCDERAEVASPLDALSALS 182

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V  LIGPEGG+   E+  L S  FV P+SLGPRI+R+DTAAVA +AL+    GDW
Sbjct: 183 G-RKVTALIGPEGGFSENERADLLSRSFVCPISLGPRIMRADTAAVAVLALLNVTVGDW 240


>gi|23010926|ref|ZP_00051451.1| COG1385: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 250

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/239 (45%), Positives = 142/239 (59%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLFV+  L           Q +YL  VLR  E D +LLFNG+DGEW ++I   G KS   
Sbjct: 10  RLFVESDLAEGLILPLERAQANYLLTVLRRSETDPVLLFNGRDGEWRAEIVPQGRKSADL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  ++R Q    D+ Y+F+P+KT RLDYM QK+VEMG G IRPV TR+TQ     ++R+
Sbjct: 70  RVVTRTRPQPAPPDLHYLFAPLKTGRLDYMAQKAVEMGAGLIRPVFTRFTQGERIKLERL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL---EKLHAI 184
           R   + AAEQC IL++P I  P  L   L        +VF DE     + +         
Sbjct: 130 RANAVEAAEQCGILSIPEIAEPARLPACLDALAPERLLVFCDEDAPVSDPVAALRAAADP 189

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           AH P +A+L+GPEGG+H EE+  + + P    LSLGPRILR+DTAAVA + LVQA+ GD
Sbjct: 190 AHPPPLAVLVGPEGGFHEEERALIAARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248


>gi|307941761|ref|ZP_07657116.1| surface protein [Roseibium sp. TrichSKD4]
 gi|307775369|gb|EFO34575.1| surface protein [Roseibium sp. TrichSKD4]
          Length = 252

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 166/244 (68%), Gaps = 6/244 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RLF+   L    + +A   Q +YL +VLR+K+GD +L F+G++GEWL++I   G K+ 
Sbjct: 8   MQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDKVLAFDGQNGEWLTEIKVTGRKAC 67

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             ++  Q+R Q K +D+ Y+F+P+K  RLDYM+QK+VEMG+G+++PV+T++TQ +  N++
Sbjct: 68  VLELVEQTRPQEKSADLLYLFAPLKHARLDYMVQKAVEMGVGSLQPVMTQHTQTSRVNLE 127

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQI-VFADETCGSENSLEKLH 182
           R+    I AAEQC +L++P +  P  L+ LL NW   H  ++ +F DE   + N L  L 
Sbjct: 128 RMEANVIEAAEQCGVLSVPGVVEPEPLKALLANWPEKHPGRVLLFCDEGSETTNPLGDLA 187

Query: 183 AI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +  A   ++A+L+GPEGG+ +EE+  LH   FV  + LGPRILR+DTAAVAA+A++QA 
Sbjct: 188 KLVEAKPESIALLVGPEGGFSTEERSILHQSDFVVSIPLGPRILRADTAAVAALAVIQAT 247

Query: 241 CGDW 244
            GDW
Sbjct: 248 LGDW 251


>gi|146342924|ref|YP_001207972.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp.
           ORS278]
 gi|146195730|emb|CAL79757.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 249

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 149/236 (63%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL          +Q +YL +VLR+  GD +L+FNG++GEW + I+   ++    
Sbjct: 10  RLFVDAPLIEGGAVALDRNQSNYLGNVLRLGAGDQVLVFNGREGEWQATIAGRKRADLLT 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           ++ + R Q +  D+ Y+F+P+K  RLDY++QK+VEMG   ++PV+TR+TQ +  N +R+R
Sbjct: 70  IQQRLRPQDQLPDITYVFAPLKHARLDYIVQKAVEMGAAVLQPVLTRHTQVSRLNGERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I AAEQC IL+L  +  P  LE  L+    +  +VF DE     + ++ L   A   
Sbjct: 130 ANVIEAAEQCGILSLAEVRDPVPLERFLRERMASRLLVFCDEAAEIADPVQALRGAAANA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +LIGPEGG+ +EE+E L     VT L+LGPRILR+DTA VAA+AL+QA  GDW
Sbjct: 190 GIDLLIGPEGGFAAEERELLLRQRQVTRLALGPRILRADTAGVAALALLQATLGDW 245


>gi|90419943|ref|ZP_01227852.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335984|gb|EAS49732.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 280

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 156/237 (65%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67
           RL++D  L  +T   A+  Q +YL +V+R+ EG  +L FNG+DGEW  + +    K +  
Sbjct: 42  RLYLDTDLVAETPVPATPVQANYLLNVMRLGEGAQVLAFNGRDGEWRCELVKAAKKKLDL 101

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               + R QT  +D+ Y+F+P+K  RLDYM+QK+VEMG G ++PV+T++ Q T  N +R+
Sbjct: 102 VPRERVRDQTPPADLHYLFAPLKHARLDYMVQKAVEMGAGVLQPVMTQHVQATRLNTERM 161

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC IL++P    P     LL  WD   +++F DE   + + ++ L A+   
Sbjct: 162 RANAIEAAEQCGILSIPECREPVKFNDLLDRWDSGRRLIFCDERADAASPIDTLRALPEG 221

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P+ A++IGPEGG+ ++E+E L++  FVT +SLGPRILR+DTAAVAAMA++QA  GDW
Sbjct: 222 PH-ALVIGPEGGFSADERERLNAADFVTAISLGPRILRADTAAVAAMAVLQAAIGDW 277


>gi|254703098|ref|ZP_05164926.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 3 str.
           686]
          Length = 214

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 143/211 (67%), Gaps = 2/211 (0%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           +LRMKEGD +L+FNG+DGEW + +   G K +  +   Q+R Q K S++ Y F+P+K  +
Sbjct: 1   MLRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQ 60

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           LDYM+QK+VEMG G ++PVIT++TQ      +R+R   I AAEQC +L+LP        +
Sbjct: 61  LDYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAEQCGVLSLPDCREALRFD 120

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
             L  WD + +++F DE   S++ L  L  +   P+  +LIGPEGG+  EE++ LH LPF
Sbjct: 121 RFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPF 179

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           VT + LGPRILR+DTAAVAAMALVQA+ GDW
Sbjct: 180 VTAIPLGPRILRADTAAVAAMALVQAVLGDW 210


>gi|27382634|ref|NP_774163.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium japonicum
           USDA 110]
 gi|27355806|dbj|BAC52788.1| blr7523 [Bradyrhizobium japonicum USDA 110]
          Length = 252

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/237 (41%), Positives = 144/237 (60%), Gaps = 1/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL    +     DQ +YL +VLR+  G  +L FNG+DGEW + I    +     
Sbjct: 11  RLFVDAPLAQDARVPLDRDQSNYLGNVLRLAAGAEVLAFNGRDGEWQAAIEGRKRPDGLV 70

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +  Q+R Q + +D+ Y+F+P+K  RLDYM+QK++EMG   ++PV+TR+TQ +  N +R+R
Sbjct: 71  ILQQTRPQDRLADLTYVFAPLKHARLDYMVQKAIEMGAAGLQPVLTRFTQASRVNTERMR 130

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI- 187
              + A+EQC IL++  +  P  LE  L        ++F DE    EN ++ L       
Sbjct: 131 ANVVEASEQCGILSIATVAEPVPLERFLSQRAAGRLLIFCDEAAEVENPVQSLQGAREAG 190

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +LIGPEGG+  EE+  L   P +  L+LGPRI+R+DTAAVAA+ALVQ + GDW
Sbjct: 191 QGIDVLIGPEGGFAEEERALLLRQPKILRLALGPRIMRADTAAVAALALVQTVLGDW 247


>gi|83859513|ref|ZP_00953034.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852960|gb|EAP90813.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 254

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 13/249 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RL++D PL          DQ HYL +V+R K GD + LFNG+DGEW ++++    K    
Sbjct: 6   RLYIDAPLEAGAVLDLDRDQAHYLVNVMRRKPGDGVRLFNGRDGEWRAEVASADRKRASL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++  Q RSQ+   D+   F+P+K  R D++++K+ E+G+ +I PVIT+ TQ+     DR+
Sbjct: 66  QIVQQRRSQSATPDMALYFAPVKKARTDFIVEKATELGVASITPVITQRTQSERVRTDRM 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177
           +  T  A+EQ + L LP I+ P +L  +LK WD    ++FADE+  S+            
Sbjct: 126 QALTREASEQTERLDLPVIHEPVSLTQMLKGWDEARTLMFADESGDSQTEPWGGEHGRAR 185

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              E L         A+L+GPEGG+  EE+  LH+  FV P+SLGPRILR+DTAA AA++
Sbjct: 186 PMAEALAGRERGGKWAMLVGPEGGFSVEERTLLHAQTFVLPVSLGPRILRADTAAAAALS 245

Query: 236 LVQAICGDW 244
           + Q++ GDW
Sbjct: 246 VWQSMLGDW 254


>gi|254503148|ref|ZP_05115299.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii
           DFL-11]
 gi|222439219|gb|EEE45898.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii
           DFL-11]
          Length = 264

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/249 (44%), Positives = 165/249 (66%), Gaps = 6/249 (2%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           K    ++RLF+   L    + +A   Q +YL +VLR+K+GD +L+FNG DGEWL+KI   
Sbjct: 15  KYEFKMQRLFLRHILADGARIEADRGQANYLLNVLRLKDGDYVLVFNGSDGEWLAKIQSS 74

Query: 62  GK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G+ +   ++  ++R QT  +D+ Y+F+P+K  RLDYM+QK+VEMG G++ PV+T++TQ++
Sbjct: 75  GRRACSLQLMERTRDQTAPNDLIYMFAPLKHARLDYMVQKAVEMGAGSLMPVMTQHTQSS 134

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENS 177
             N++R+    I AAEQC +L++P +  P +L+ +L  W       +++F DE   + N 
Sbjct: 135 RVNVERMEANVIEAAEQCGVLSVPTVLSPMSLKDVLTAWPEAHAGRKLLFCDEGEETNNP 194

Query: 178 LEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L  L  +     P +AILIGPEGG+  +E+  L  L FVTP+ LGPRILR+DTAAVAA+A
Sbjct: 195 LLTLVQLKENGPPPLAILIGPEGGFSKDERGLLKDLDFVTPIPLGPRILRADTAAVAALA 254

Query: 236 LVQAICGDW 244
           +VQA  GDW
Sbjct: 255 VVQATVGDW 263


>gi|220920410|ref|YP_002495711.1| hypothetical protein Mnod_0365 [Methylobacterium nodulans ORS 2060]
 gi|219945016|gb|ACL55408.1| protein of unknown function DUF558 [Methylobacterium nodulans ORS
           2060]
          Length = 267

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 142/243 (58%), Gaps = 9/243 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLF+D P+    +      Q +YL  VLR  EGD +L+FNG+DGEW ++I   G K+   
Sbjct: 10  RLFLDLPMREGMRHSLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWRAEIQPTGRKAGDL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q+R QT   ++ Y+F+P+K  RLDY+ QK+VEMG   IRPVITR TQ     +DR+
Sbjct: 70  ILREQTRPQTPPGNLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--- 184
           R   I AAEQC ILT+P I     L   L   +    +VF DE     + +  L      
Sbjct: 130 RANAIEAAEQCGILTIPEIAEAAPLPAALSALEAERLLVFCDEDAPVADPIMTLRQAGAG 189

Query: 185 ----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                 +P +A++IGPEGG+  EE+  +   P    LSLGPRILR+DTAAVA +ALVQA+
Sbjct: 190 REGNGGLP-LAVVIGPEGGFTPEERALILDRPNTVRLSLGPRILRADTAAVAVLALVQAV 248

Query: 241 CGD 243
            GD
Sbjct: 249 LGD 251


>gi|149913421|ref|ZP_01901954.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b]
 gi|149812541|gb|EDM72370.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b]
          Length = 241

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67
           RL+V+ PL        + DQ HYL  V+R   GD +L FNG+DGEWL  +    K     
Sbjct: 7   RLYVEHPLGEGQTVPLNRDQAHYLFAVMRRGAGDALLAFNGRDGEWLVTVQEASKKGGVL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +VE Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 67  RVEKQTAPQRNPPDLWVLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + I AAEQC    +P +     L+ LL++W    Q++F DE      + + L A+   
Sbjct: 127 QAHAIEAAEQCGGTYVPEVADLQKLDQLLQDWPEGRQLMFCDEALA--GAAQNLGAVGG- 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E+  LH+LPF  P+SLGPRILR+DTAAVAAM + Q   GDW
Sbjct: 184 PAWAILIGPEGGFSEAERARLHALPFAHPVSLGPRILRADTAAVAAMTVWQMALGDW 240


>gi|115522898|ref|YP_779809.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris BisA53]
 gi|115516845|gb|ABJ04829.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           BisA53]
          Length = 258

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 110/238 (46%), Positives = 146/238 (61%), Gaps = 2/238 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL   TQ   + +Q +YL +VLR+  G  +L FNG DGEW + I    +  R +
Sbjct: 10  RLFVDAPLVAGTQVPLTREQANYLGNVLRLSPGGRVLAFNGSDGEWQALIVGGKRLERLE 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +  Q+R Q +  DV Y ++P+K  RLDYM+QK+VE+G  A+ PV+TR+TQ T  N +R+R
Sbjct: 70  MLLQTRPQDRLPDVTYAYAPLKHARLDYMVQKAVELGAAALVPVLTRFTQATRVNTERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I AAEQC IL+L  +  PT LE  L   D    +VF DE     + +  L       
Sbjct: 130 ANVIEAAEQCGILSLAAVEEPTKLERWLTARDGQRLLVFCDEDAEIADPVAALAGARDRA 189

Query: 189 NVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              I  LIGPEGG+  EE++ L   P V  L+LGPRI+R+DTAAVAA+ALVQA+ GDW
Sbjct: 190 QAGIDVLIGPEGGFAEEERDLLLRQPSVLRLALGPRIMRADTAAVAALALVQAVLGDW 247


>gi|302381943|ref|YP_003817766.1| hypothetical protein Bresu_0829 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192571|gb|ADL00143.1| protein of unknown function DUF558 [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 237

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 5/237 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67
           RL V  PL        + DQ  YL  V+R+K GD++L+FNG+DGEW +  +  + K +  
Sbjct: 3   RLHVTQPLAPGAAVAPTLDQSRYLTQVMRLKLGDDLLVFNGRDGEWRATLVEILKKGVIL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           + E Q R Q    D++ I + +K +R++ +++K+ E+G   +R  IT+ T   H  +DR+
Sbjct: 63  RAEDQVRPQAYGPDLELIVAVVKKSRVETIVEKAAELGAARVRLTITQRTNVDHVRLDRL 122

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ   L +P +  P  L  LL  WD + +++F DET G+  +     A+   
Sbjct: 123 DAIAIEAAEQTGRLDVPTVDDPQKLGALLDGWDPSRRLMFCDETGGAPVA----SAVTES 178

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+  EE++ L +LPF T +SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 179 GPWAILIGPEGGFSPEERDRLRALPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 235


>gi|296444351|ref|ZP_06886316.1| protein of unknown function DUF558 [Methylosinus trichosporium
           OB3b]
 gi|296257998|gb|EFH05060.1| protein of unknown function DUF558 [Methylosinus trichosporium
           OB3b]
          Length = 247

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 1/238 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           +RLFVD  L    +    GD+ +YL +VLR++EGD +LLFNG+DGEWL+++  V + S  
Sbjct: 9   QRLFVDERLEAGARMIPDGDRLNYLLNVLRLREGDGVLLFNGRDGEWLARLEKVTRRSAE 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                ++R QT   D+ Y F+P+K  RLDYM QK+ EMG   + P+ITR TQ    N+ R
Sbjct: 69  LVATTRAREQTAPCDLHYCFAPLKHARLDYMAQKATEMGASRLVPIITRRTQARRVNLTR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC +L +P +    +L+  L     +  +VF DE     + +  L A   
Sbjct: 129 LRANAIEAAEQCGVLGVPEVAEEVSLDAFLAGLCASRLLVFCDEAAEIADPVAALRAAPE 188

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              +A++IGPEGG+  EE+  + S   V  L+LGPRILR+DTAAVAA+A+VQ   GDW
Sbjct: 189 HEGIAVIIGPEGGFDEEERRAILSAGKVARLALGPRILRADTAAVAALAIVQTTIGDW 246


>gi|197104001|ref|YP_002129378.1| hypothetical protein PHZ_c0535 [Phenylobacterium zucineum HLK1]
 gi|196477421|gb|ACG76949.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 239

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 137/237 (57%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV   L    +      Q  YLA V+R K GD + +FNG+DGEW + ++ VGK ++  
Sbjct: 3   RLFVTHDLSAGAELALDEGQSRYLAAVMRAKAGDELRVFNGRDGEWRALVAAVGKRAVTL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V   +R Q    D+  + + +K   L+ +++K+ E+G   IRPV+T  T   H  ++R+
Sbjct: 63  QVIDPARPQAPGPDLDLVVALVKRAPLETIVEKAAELGARRIRPVVTERTNADHTRVERL 122

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R     A+EQ   L +P +  P  LE LL  W+   +++F DE   +   LE L   A  
Sbjct: 123 RAIATEASEQTGRLDVPEVTEPVKLERLLAEWEPGRRLLFCDEAGDARPVLEALEGAAG- 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+E L +LP+  P SLGPRILR+DTAA++A+AL QA  GDW
Sbjct: 182 -PWAILIGPEGGFSPREREALRALPYAVPASLGPRILRADTAAISALALWQAAAGDW 237


>gi|209886372|ref|YP_002290229.1| hypothetical protein OCAR_7260 [Oligotropha carboxidovorans OM5]
 gi|209874568|gb|ACI94364.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 246

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/236 (44%), Positives = 145/236 (61%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL    +   + +Q HYL +VLR+   D +L+FNG+DGEW ++I+   +  +  
Sbjct: 10  RLFVDAPLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQITGRKRLEQLT 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
              Q+R Q    D+  +F+P+K  RLDYM+QK+VEMG   + P +T++TQ +  N++R+R
Sbjct: 70  PLEQTRPQDPPCDLHLLFAPLKHARLDYMVQKAVEMGASRLTPTLTQFTQVSRINLERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I AAEQC IL LP I  P  L   L   D    +VF DE     + L  L   A+  
Sbjct: 130 ANAIEAAEQCGILNLPEIDEPLPLTGRLAERDGKRLLVFCDEAAPQASPLAALKEAANDG 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +LIGPEGG+  +E+  L + P +  LSLGPRILR+DTAAVAA+ALVQA  GDW
Sbjct: 190 GLDVLIGPEGGFSEDERAALLAQPRLVRLSLGPRILRADTAAVAALALVQAALGDW 245


>gi|89070197|ref|ZP_01157525.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516]
 gi|89044213|gb|EAR50364.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516]
          Length = 237

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 7/238 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD PL          +Q HYL  V+R+ EG  +LLFNG+DGEW ++++  GK     
Sbjct: 5   RLYVDHPLGAGQTVPLIREQAHYLFGVMRLGEGAEVLLFNGRDGEWSARVAEAGKRGGTL 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+R      D+  +F+P+K  R D++++K+VEMG   + PV T +T +     DR+
Sbjct: 65  ACAAQTRPLAPPPDLWLLFAPVKKARTDFIVEKAVEMGAARLCPVQTEFTNSERIRRDRL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC   T+P +     L+ LL  WD + +I+  DET   +++     A+   
Sbjct: 125 QAHAVEAAEQCGATTVPEVADLARLDRLLDGWDPSRRIMLCDETRAGDDA-----ALPAE 179

Query: 188 PNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P   AILIGPEGG+   E+  L +LPF  P++LGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 180 PGPWAILIGPEGGFSDAERARLAALPFTRPVALGPRILRADTAAVAALTLWQTQLGDW 237


>gi|92118652|ref|YP_578381.1| 16S ribosomal RNA methyltransferase RsmE [Nitrobacter hamburgensis
           X14]
 gi|91801546|gb|ABE63921.1| protein of unknown function DUF558 [Nitrobacter hamburgensis X14]
          Length = 261

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 5/239 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL    +     +Q +YL +VLR+  G N+L+FNG+DGEW + IS   +     
Sbjct: 10  RLYVDAPLEPGGKVPLDRNQGNYLGNVLRLGSGANVLVFNGRDGEWRAAISGRKRPECLD 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +   +R+Q +  D+ Y+F+P+K  RLDYM+QK+VEMG+ A++PV+TR+TQ    N +R+R
Sbjct: 70  IVAAARAQDRLPDLHYVFAPLKHARLDYMVQKAVEMGVSALQPVLTRFTQVARVNGERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---SLEKLHAIA 185
              I AAEQC IL+L  +  P TL+  L        +V  DE     N   +LE +   A
Sbjct: 130 ANVIEAAEQCGILSLAAVEEPVTLDRWLGRRAPERLLVLCDEAALVTNPAAALEPMRGAA 189

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           H   + +L+GPEGG+  +E+  L + P    LSLGPRILR+DTAAVAA+ALVQ + GDW
Sbjct: 190 H--GIDVLVGPEGGFAEDERANLLNQPNTLRLSLGPRILRADTAAVAAIALVQTVLGDW 246


>gi|288957600|ref|YP_003447941.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp.
           B510]
 gi|288909908|dbj|BAI71397.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp.
           B510]
          Length = 259

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 139/240 (57%), Gaps = 8/240 (3%)

Query: 9   RLFVDFPLCIKTQGKASG---DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           RL+VD PL    +G++ G   ++ H+L HVLR+  GD + +FNG+DGEW + I   GK  
Sbjct: 8   RLYVDSPL---AEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGW 64

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
               +  Q R Q    D+  +F+P+K  R+D++ +K+ EMG+  + PV TR T     N+
Sbjct: 65  CSLTLAEQRREQDTGPDLWLVFAPLKKGRIDFVAEKATEMGVSRLCPVFTRRTDPNRVNL 124

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DR+R   + AAEQC+ L++P +     L+  L  W    ++    E   +    E L   
Sbjct: 125 DRLRANAVEAAEQCERLSVPDLADALPLDRALAAWPAERRLYLCAEAGAARPIAEVLRDA 184

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           A  P  A+L+GPEGG+   E + L  LPFV P+ LGPRILR+DTA VAA+A  Q++ GDW
Sbjct: 185 AAGP-AALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQSLAGDW 243


>gi|260575962|ref|ZP_05843957.1| protein of unknown function DUF558 [Rhodobacter sp. SW2]
 gi|259021888|gb|EEW25189.1| protein of unknown function DUF558 [Rhodobacter sp. SW2]
          Length = 245

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/238 (41%), Positives = 139/238 (58%), Gaps = 2/238 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL +      + DQ +YL  V+R+  GD +LLFNG+DGEW   ++  GK     
Sbjct: 7   RLYVDQPLGVGQPVPLNADQANYLFAVMRLGRGDAVLLFNGRDGEWRGVVAEAGKRGGVL 66

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V + Q+R      D+  +F+PIK  R D++++K+ E+G   I PV TR+T       DR+
Sbjct: 67  VCDAQTRPLQMPPDLWLLFAPIKKARTDFIVEKAAELGASRILPVQTRFTNAERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAH 186
           + + + AAEQC    +P +     L+ +L  W    ++++ DE   G  ++L  L A A 
Sbjct: 127 QAHAVEAAEQCGGTFVPEVCDLQGLDKVLDTWPAERRLLWCDEHMVGGSSALTGLLATAR 186

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E+  L  LP V P+SLGPRILR+DTAAVAA+ L QA  GDW
Sbjct: 187 GGPWAILIGPEGGFAESEQARLRGLPQVVPISLGPRILRADTAAVAALVLWQAALGDW 244


>gi|167644342|ref|YP_001682005.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter sp. K31]
 gi|167346772|gb|ABZ69507.1| protein of unknown function DUF558 [Caulobacter sp. K31]
          Length = 238

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV  PL +      + DQ  YL  V+R+  GD IL+FNG+DGEW   ++  GK     
Sbjct: 3   RLFVPHPLKVGAGVAPTVDQSRYLTAVMRLNVGDEILVFNGQDGEWRCGLTEAGKRGCLL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           + E Q+R Q    D+  + + +K  R++ +++K+ E+G   +R   TR T      + R+
Sbjct: 63  RCEEQTREQDHAPDLDLVVAMVKRGRVETIVEKAAELGARRVRLTQTRRTNVDFLKLGRL 122

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ   L +P I  P  L+ +L  WD   ++VF DE   +   +E +      
Sbjct: 123 DAIAIEAAEQTGRLDVPVIDDPMKLDKILDTWDPARRLVFCDEGGDARTMIEAVTGTGA- 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+  EE++ L SLPFV P+SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 182 -PAAILIGPEGGFAPEERKRLRSLPFVIPVSLGPRILRADTAAIAAMTLWQAAAGDW 237


>gi|119383376|ref|YP_914432.1| hypothetical protein Pden_0624 [Paracoccus denitrificans PD1222]
 gi|119373143|gb|ABL68736.1| protein of unknown function DUF558 [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLF+D PL      + + DQ HYL+ V+R   GD IL+FNG+DGEWL++I  + K     
Sbjct: 5   RLFIDHPLAEGQGIELNADQSHYLSSVMRQGAGDEILVFNGQDGEWLARIERIAKRGGAL 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 65  EALRQTAPQLNPPDLWLVFAPIKKARTDFIVEKAAEMGAARILPVQTDHTNSERIRQDRL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  LL  WD   +I++ADE       +  L  +   
Sbjct: 125 QAHAVEAAEQCGGTHVPEVCDLVPLSRLLDGWDAGRRILWADEALAGPAQV--LSGLPRG 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E++ L ++  VT ++LGPRILR+DTAAVA++AL QA  GDW
Sbjct: 183 P-WAILIGPEGGWSESERKRLSAMDCVTRIALGPRILRADTAAVASLALWQASLGDW 238


>gi|84685244|ref|ZP_01013143.1| hypothetical protein 1099457000257_RB2654_10264 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666976|gb|EAQ13447.1| hypothetical protein RB2654_10264 [Rhodobacterales bacterium
           HTCC2654]
          Length = 241

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 137/237 (57%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFVD  L          D+ HYL  V+R   GD + LFNG+DGEW ++++  GK +   
Sbjct: 8   RLFVDESLREGQTIPLERDKAHYLFGVMRQAVGDRVALFNGRDGEWTAEVTLAGKRNGVL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV+T +T +    +DR+
Sbjct: 68  TCLGQAAPQLDPPDLWLMFAPIKKARTDFIVEKAAEMGASRIVPVLTEFTNSERVRVDRL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +  P  L+ LL  WD   +++F DE    EN  + L   A  
Sbjct: 128 QAHAVEAAEQCGGTFVPEVAEPEKLDRLLDGWDGARRLMFCDEALAGEN--KPLSGAAGA 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E++ LH +     +SLGPRILR+DTAAVAAM L Q+  GDW
Sbjct: 186 P-WAILIGPEGGFSDAERKRLHGMESAVSVSLGPRILRADTAAVAAMTLWQSALGDW 241


>gi|154248025|ref|YP_001418983.1| 16S ribosomal RNA methyltransferase RsmE [Xanthobacter
           autotrophicus Py2]
 gi|154162110|gb|ABS69326.1| protein of unknown function DUF558 [Xanthobacter autotrophicus Py2]
          Length = 242

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 4/222 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIR 66
           +RL+VD  L        + +Q HY+A+V+R+  G ++LLFNG+DGEW  ++++   + +R
Sbjct: 9   QRLYVDAELGPDASVLLAPEQAHYVANVIRLAVGQDLLLFNGRDGEWRATRVAGGKRDVR 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           F+V  Q R Q +   ++Y F+P+K  RLDYM+QK+VEMG G + PVITRYTQ +  N+DR
Sbjct: 69  FEVSAQVRPQPEAPTLEYAFAPLKHARLDYMVQKAVEMGAGVLSPVITRYTQVSRINLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    + AAEQC IL+LP +  P  L   L        +VF DE     + +  L     
Sbjct: 129 MAANAVEAAEQCGILSLPHVAEPRPLAQWLDALPAERVLVFCDEAAADHDPIHALRTAPS 188

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            P V++LIGPEGG+  +E+  +   P    LSLGPRILR+DT
Sbjct: 189 GP-VSVLIGPEGGFSPDERALIA--PRAVTLSLGPRILRADT 227


>gi|126727781|ref|ZP_01743611.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium
           HTCC2150]
 gi|126702908|gb|EBA02011.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium
           HTCC2150]
          Length = 246

 Score =  184 bits (468), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/242 (41%), Positives = 139/242 (57%), Gaps = 4/242 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L RL+ D PL          DQ HYL  V+R K GD + LFNG+DGEW  K+ +  K   
Sbjct: 4   LSRLYTDHPLAQGHNIPLERDQAHYLFGVMRRKLGDEVELFNGRDGEWRGKVVHANKHRG 63

Query: 67  -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +V +Q+R      D+  +F+PIK  R D++++K+ EMG   I PV+T YT +     +
Sbjct: 64  ILEVTHQTRPLQMPPDLWLMFAPIKKARTDFIVEKATEMGAARIVPVMTEYTNSDRVRQE 123

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLE--KLH 182
           +++ + + AAEQC    +P +     L+ +L NW    Q++F DE   G    L+  KL 
Sbjct: 124 KMQIHAVEAAEQCGGTYVPEVAELQKLDRMLDNWPDGRQLLFCDEGLIGRPTGLDQSKLT 183

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           A+      AILIGPEGG+  +E+  L SL FVT  SLGPRILR+DTAAVAA+ L Q   G
Sbjct: 184 AVNKTGPWAILIGPEGGFSEKERNRLASLDFVTTQSLGPRILRADTAAVAALTLWQRELG 243

Query: 243 DW 244
           DW
Sbjct: 244 DW 245


>gi|296533751|ref|ZP_06896298.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296265927|gb|EFH12005.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 242

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 143/239 (59%), Gaps = 4/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + RL V   L    +      Q HYL  V+R KEGD + LFNG+DGEWL++I+ + K  +
Sbjct: 3   IPRLHVAADLAEAAEIPGEPGQGHYLGQVMRRKEGDPVHLFNGRDGEWLARIAALRKDRV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           +F+ E + R Q    D++ + +P+K + +D++++K+ E+G+ +IRPV T        N++
Sbjct: 63  QFRPESRLRPQQSGPDLRLLLAPVKRDAMDWIVEKATELGVRSIRPVFTARCVIGRVNLE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+ T    AAEQC+ L +P I  P  L   L  WD    +V   +  G   SL  + A  
Sbjct: 123 RLSTIAREAAEQCERLDVPEIAAPLDLHAALDAWDGAPLLV--GDARGKAPSLNVVLA-G 179

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P + +L+GPEGG+  +E + +   PFV+P +LGPRILR++TAAVA +A++QA+ GDW
Sbjct: 180 KAPPLGLLVGPEGGFTDQELDAVRRRPFVSPAALGPRILRAETAAVAGLAVLQALAGDW 238


>gi|163758378|ref|ZP_02165466.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43]
 gi|162284667|gb|EDQ34950.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43]
          Length = 250

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 149/245 (60%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  L+RL++D PL  + +     +Q HYL  VLRM E   +L+FNG+DGE+LS +  
Sbjct: 7   MRANFKLQRLYLDAPLVPRQRAAMRKEQAHYLLTVLRMAEDQQVLVFNGRDGEFLSALKP 66

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K +   ++  Q+R Q     + ++F+P+K  RL+Y++QK+ EMG+  I P  T +TQ 
Sbjct: 67  LSKKAAELEIVEQTRPQPPLPRLDFLFAPLKVGRLEYLVQKATEMGVRQITPAFTDHTQL 126

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N  R+    + AAEQC  L +P +     L+ LL  WD   +I+F +E+    N  +
Sbjct: 127 HKVNAARLEANILEAAEQCGNLAIPQLQEAQKLDALLDGWDPARRIIFCNESQAGNNPTD 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L A+    ++A+L+GPEGG+   E+E L +LPF+T + LGPRILR+DTAAVAA+  VQ 
Sbjct: 187 ILSAVEER-DLALLVGPEGGFSDRERERLLALPFLTAIPLGPRILRADTAAVAALTAVQM 245

Query: 240 ICGDW 244
             GDW
Sbjct: 246 TIGDW 250


>gi|299134206|ref|ZP_07027399.1| protein of unknown function DUF558 [Afipia sp. 1NLS2]
 gi|298590953|gb|EFI51155.1| protein of unknown function DUF558 [Afipia sp. 1NLS2]
          Length = 255

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 140/237 (59%), Gaps = 1/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL    +     +Q HYL +VLR+  GD+IL+FNG DGEW ++I    +     
Sbjct: 10  RLFVDAPLDAGGRVALEREQGHYLGNVLRLGTGDSILVFNGHDGEWRAQIEGRKRPEHLT 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           +  Q+R Q    D+  +F+P+K  RLDYM+QK+VEMG   + P +T++TQ +  N +R+R
Sbjct: 70  LTEQTRPQETPCDLHLLFAPLKHARLDYMVQKAVEMGASLLAPTLTQFTQVSRVNTERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHI 187
              I AAEQC IL LP I  P  L   L   D    ++F DE     + L  L       
Sbjct: 130 ANAIEAAEQCGILNLPGINEPQPLARRLSERDGQRLLIFCDEAAPQCDPLAALGMGAGKT 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +L+GPEGG+  EE+  L   P +  LSLGPRILR+DTAAVAA+ALVQA  GDW
Sbjct: 190 KGLDVLVGPEGGFSEEERALLLRQPRLMRLSLGPRILRADTAAVAALALVQAALGDW 246


>gi|298290358|ref|YP_003692297.1| hypothetical protein Snov_0345 [Starkeya novella DSM 506]
 gi|296926869|gb|ADH87678.1| protein of unknown function DUF558 [Starkeya novella DSM 506]
          Length = 260

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 146/233 (62%), Gaps = 2/233 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           +RL+VD  L   T  +   D+ HY+A V+R++ G  + LFNG+DGEW +     G+    
Sbjct: 18  QRLYVDDDLGEGTLVRLDRDRAHYVADVIRLEVGGALHLFNGRDGEWRAVREPAGRREAV 77

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            + E + R Q + +D+ Y+F+P+K  RLDYM+QK+VEMG G + PV+TR TQ +  N +R
Sbjct: 78  LRCEARLRRQAEPADLDYVFAPLKHARLDYMVQKAVEMGAGRLVPVMTRRTQASRVNTER 137

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC IL+LP +  P+ L   L +     ++VF DE     + L +L     
Sbjct: 138 MRANVIEAAEQCGILSLPAVLEPSALARWLADLAPERRLVFCDEAAPEADPLAELREAVA 197

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            P +A+LIGPEGG+  EE+  L + P    LSLGPRILR+DTAAVAA+A+V+A
Sbjct: 198 GP-LAVLIGPEGGFDEEERRLLKARPGTIVLSLGPRILRADTAAVAALAMVEA 249


>gi|316932695|ref|YP_004107677.1| hypothetical protein Rpdx1_1321 [Rhodopseudomonas palustris DX-1]
 gi|315600409|gb|ADU42944.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           DX-1]
          Length = 257

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/239 (44%), Positives = 146/239 (61%), Gaps = 3/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD  L    Q     DQ +YL +VLR+  G ++L FNG+DGEW + I+   +    +
Sbjct: 10  RLFVDATLAPGAQVPLERDQSNYLGNVLRLGAGADVLTFNGRDGEWRATIAGRKRPEALE 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V  Q+R Q +  DV Y+F+P+K  RLDYM QK+VEMG G +RPV+T++TQ    N DR+R
Sbjct: 70  VAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLRPVLTQHTQVHRLNTDRMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSL--EKLHAIA 185
              I AAEQC IL+L  +  P  L+ FL         +VF DE     + +        A
Sbjct: 130 ANVIEAAEQCGILSLAEVGEPIGLDRFLAGRASGERLLVFCDEDAEIADPVAALAAARPA 189

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V +L+GPEGG+ +EE++ L   P +  L+LGPRI+R+DTAAVAA+ALVQA+ GDW
Sbjct: 190 ATKGVDLLVGPEGGFSAEERDVLLKQPNILRLALGPRIMRADTAAVAALALVQAVVGDW 248


>gi|295687718|ref|YP_003591411.1| hypothetical protein Cseg_0273 [Caulobacter segnis ATCC 21756]
 gi|295429621|gb|ADG08793.1| protein of unknown function DUF558 [Caulobacter segnis ATCC 21756]
          Length = 238

 Score =  181 bits (459), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 132/237 (55%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV   L        + DQ  YL  V+R+  GD +LLFNG+DGEW + I    K     
Sbjct: 3   RLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGDEVLLFNGRDGEWRASIVEATKRGCLL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           K + Q+R      D+  I + +K  R++ +++K+ E+G   +R  ITR T      + R+
Sbjct: 63  KADVQTRPMDTGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLGRL 122

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               + AAEQ   L +P I  P  L+ +L  WD   ++VF DE   +  ++E L      
Sbjct: 123 DAIAMEAAEQTGRLDVPEIVDPEKLDKILDGWDPTRRLVFCDEGGDARPAIEALAGTGA- 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+  EE+E L  L FVTP+SLGPRILR+DTAA++AM L QA  GDW
Sbjct: 182 -PAAILIGPEGGFAPEERERLRGLSFVTPVSLGPRILRADTAAISAMTLWQASAGDW 237


>gi|329888452|ref|ZP_08267050.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328847008|gb|EGF96570.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 239

 Score =  181 bits (458), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 3/219 (1%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85
           DQ  YL  V+R+K GD +L+FNG+DGEW   ++ V  K +  + E Q R Q    D++ I
Sbjct: 21  DQSRYLTQVMRLKAGDELLVFNGRDGEWRVSVAEVLKKGVILRAEEQMRPQVYGPDLELI 80

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
            + +K  R++ +++K+ E+G   +R  +T  T      +DR+      AAEQ   L +P 
Sbjct: 81  VAVVKKARVETIVEKAAELGAKRVRLALTHRTNADRLRLDRLDAIAEEAAEQTGRLDVPV 140

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           +  P  L+ LL  W+   +++F DET G+  +     A       AILIGPEGG+  EE 
Sbjct: 141 VDDPVKLDALLDGWEAGRRLMFCDETGGAPAASALTQA--GDGKWAILIGPEGGFSPEEG 198

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E L SLPF T +SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 199 ERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 237


>gi|260431629|ref|ZP_05785600.1| surface protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415457|gb|EEX08716.1| surface protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 241

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD PL        + +Q HYL  V+R+  G  + LFNG+DGEWL++++  GK     
Sbjct: 6   RLYVDHPLGAGQSVPLTREQAHYLFGVMRLAVGGQVALFNGRDGEWLAEVAEAGKRGGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+R      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  SCLEQTRPLQLPPDLWLLFAPIKKARTDFIVEKAAEMGAAKIMPVQTAFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ LL NW    Q++F DE      S  +L A    
Sbjct: 126 QAHAVEAAEQCGGTFVPEVCDLQRLDKLLDNWPDGRQLMFCDEA--EAGSALRLAAQDKG 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E++ L  LPF   +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 184 RPWAILIGPEGGFSDAERQRLKDLPFTHVVSLGPRILRADTAAVAAMTLWQQALGDW 240


>gi|146276272|ref|YP_001166431.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554513|gb|ABP69126.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 257

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 142/250 (56%), Gaps = 14/250 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD PL      + + DQ HYL  V+R+  G  +LLFNG+DGEW ++++  GK     
Sbjct: 7   RLYVDQPLGPGQPVRLTQDQAHYLFGVMRLARGAAVLLFNGRDGEWRAEVTEAGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+    +  D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  TCAAQTAPLRRPPDLWLMFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--LEKLHAIA 185
           + + + AAEQC    +P +     L+ LL  W  + +I++ DE      +  LE   AI 
Sbjct: 127 QAHAVEAAEQCGGTYVPEVAELAALDRLLSGWPADRRIMWCDENLLGARAGLLEGAGAIE 186

Query: 186 -----HIPNV------AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                  P+       AILIGPEGG+  +E+  L  +P V P+SLGPRILR+DTAAVAA+
Sbjct: 187 ARGFEEAPSQPSPGPWAILIGPEGGFSEDEQARLRRMPQVVPVSLGPRILRADTAAVAAL 246

Query: 235 ALVQAICGDW 244
            L Q++ GDW
Sbjct: 247 TLWQSVLGDW 256


>gi|83309343|ref|YP_419607.1| 16S ribosomal RNA methyltransferase RsmE [Magnetospirillum
           magneticum AMB-1]
 gi|82944184|dbj|BAE49048.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
          Length = 252

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 148/237 (62%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFV+ PL        + DQ HYLA V+R   G+ +LLFNG+DGEWL++I+ + K+    
Sbjct: 11  RLFVEAPLSAGMAVALTRDQTHYLASVMRAAVGELVLLFNGRDGEWLARIAALAKAGAAL 70

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V E Q+R Q  + D+  + +P+K +R D +++K+ E+G+  + PV TR T     N DR+
Sbjct: 71  VPESQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSRLWPVFTRRTNAGRVNADRL 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             + + AAEQC+ LT+P +  P  L+ +L  W     ++F DE  G     E L+ ++  
Sbjct: 131 HAHLVEAAEQCERLTVPDLAEPAALDKVLAGWPAERVLLFLDEGGGGVPLAEVLNGLSGQ 190

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             +A+L+GPEGG+  EE+  + S PF   + LGPRILR++TAA+AA+A+VQA+ GDW
Sbjct: 191 -KLALLVGPEGGFDGEERRLIASRPFARAVGLGPRILRAETAAIAALAVVQALNGDW 246


>gi|163732851|ref|ZP_02140296.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149]
 gi|161394211|gb|EDQ18535.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149]
          Length = 247

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 136/237 (57%), Gaps = 5/237 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL        S DQ HYL  V+R+  G ++L+F+G+ GEWL++++  GK     
Sbjct: 14  RLYVDHPLGEGQSVPVSRDQAHYLFGVMRLGVGAHVLVFDGQSGEWLAEVAQAGKRAGEL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q+R      D+  +F+PIK  R D++++K+VEMG   I PV T +T       DR+
Sbjct: 74  HLLRQTRPLLMPPDLWLLFAPIKKARTDFIVEKAVEMGAARIMPVQTEFTNAGRIQRDRL 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+++L  WD    I+F DE    E + E L  +   
Sbjct: 134 QAHAVEAAEQCGGTFVPKVDDLARLDWVLGGWDTTRSIMFCDE----ERAGESLTLLQKA 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E E L SL    P+SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 190 GPWAILIGPEGGFSPREHEKLGSLAHAHPVSLGPRILRADTAAVAALTVWQQALGDW 246


>gi|209966873|ref|YP_002299788.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum centenum
           SW]
 gi|209960339|gb|ACJ00976.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 260

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLFVD PL         G + HYL  VLRM+ G+ +L FNG+DGEWL++++ +GKS    
Sbjct: 8   RLFVDAPLSEGAAVPLEGGRAHYLRTVLRMQPGERVLAFNGRDGEWLAEVAQLGKSGGTL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               + R QT +     +F+P+K  R D + +K+ E+G   + PV TR T     N++R+
Sbjct: 68  TALRRERDQTGEEGPWLLFAPLKGGRSDSVAEKATELGAAVLHPVFTRRTDVGRVNLERL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               + AAEQC+ L++P +     L   L+ WD    +  A E+  +  ++  + A    
Sbjct: 128 AANAVEAAEQCERLSVPEVREACPLFKALEGWDPARVLFVAAESGQAMPAVSAVTAQRGR 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  A L+GPEGG+   E + L  LPFV P+ LGPR+LR+DTAA A +A+ QA+ GDW
Sbjct: 188 P-AAWLLGPEGGFDRAELDGLLHLPFVVPVGLGPRVLRADTAAFAVLAVWQALAGDW 243


>gi|91978577|ref|YP_571236.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris BisB5]
 gi|91685033|gb|ABE41335.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           BisB5]
          Length = 251

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 145/239 (60%), Gaps = 3/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD  L    +     DQ +YL +VLR+  G  +L FNG+DGEW + I+   +    +
Sbjct: 10  RLFVDAALAPGARVPLDRDQSNYLGNVLRLGAGAPVLTFNGRDGEWRAAIAGRKRPEELE 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V  Q+R Q +  D+ Y+F+P+K +RLDYM QK+VEMG G ++PV+TR+TQ    N DR+R
Sbjct: 70  VTDQTRPQDRLPDLTYVFAPLKHSRLDYMTQKAVEMGAGRLQPVLTRHTQVHRLNTDRMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
              I AAEQC IL++  +     LE +L    D    + F DE     + +  L      
Sbjct: 130 ANAIEAAEQCGILSVAAVEESIALERWLAARADGGRLLAFCDEDAEIADPVAALQGARAT 189

Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               + +L+GPEGG+ +EE+E L   P +  L+LGPRI+R+DTAAVAA+ALVQA+ GDW
Sbjct: 190 AAQGIDLLVGPEGGFSNEERELLLRQPNILRLALGPRIMRADTAAVAALALVQAVIGDW 248


>gi|23016538|ref|ZP_00056293.1| COG1385: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 254

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 151/239 (63%), Gaps = 6/239 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL        + DQ HYLA V+R + G+ +LLFNG DGEW ++I+ + K+    
Sbjct: 11  RLFVDAPLSEGVAVALTRDQTHYLASVMRAELGEMVLLFNGTDGEWAARIAALPKAGAAL 70

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V E Q+R Q  + D+  + +P+K +R D +++K+ E+G+  + PV TR T     N DR+
Sbjct: 71  VPERQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSLLMPVFTRRTNAGRVNTDRL 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R + I AAEQC+ L++P +  P  L+ +L +W  +  ++F DE  GS   L   H +  +
Sbjct: 131 RAHLIEAAEQCERLSVPQLSEPCPLDKVLADWPTDRILLFLDE-GGSGIPLA--HVLNGM 187

Query: 188 PN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P   +A+L+GPEGG+ +EE+  + S  F   + LGPRILR++TAA+AA+A+VQA+ GDW
Sbjct: 188 PGEKLALLVGPEGGFDAEERRLIGSKSFARAVGLGPRILRAETAAIAALAVVQALTGDW 246


>gi|86748970|ref|YP_485466.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris HaA2]
 gi|86571998|gb|ABD06555.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 251

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 148/239 (61%), Gaps = 3/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLF+D  L    +   + DQ +YL +VLR+  G  +L FNG+DGEW + ++   +    +
Sbjct: 10  RLFLDAALVAGARVPLNRDQSNYLGNVLRLSSGAPVLAFNGRDGEWRAVLAGRKRPEELE 69

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V  Q+R Q +  D+ Y F+P+K  RLDYM QK+VEMG G ++PV+TR+TQ    N +R+R
Sbjct: 70  VAEQTRPQDRLPDLTYAFAPLKHARLDYMAQKAVEMGAGRLQPVLTRHTQVHRLNTERMR 129

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAI--A 185
              I AAEQC IL+L  +  P  LE  L+    + + +VF DE     + +  L     A
Sbjct: 130 ANVIEAAEQCGILSLAGVEEPVALERWLETRAESGRLLVFCDEDAEVADPVAALQGARPA 189

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               + +L+GPEGG+ ++E++ L   P +  L+LGPRI+R+DTAAVAA+ALVQA+ GDW
Sbjct: 190 AAQGIDLLVGPEGGFAADERDVLLRQPNILRLALGPRIMRADTAAVAALALVQAVAGDW 248


>gi|254463111|ref|ZP_05076527.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
           HTCC2083]
 gi|206679700|gb|EDZ44187.1| conserved hypothetical protein TIGR00046 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 240

 Score =  177 bits (450), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 135/238 (56%), Gaps = 6/238 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67
           RLFVD PL        S  Q HYL  V+R+  G  + LFNGKDGEW  +I   GK     
Sbjct: 6   RLFVDQPLAEGNCVSVSQAQAHYLFGVMRLAVGGAVSLFNGKDGEWRCEILEAGKRKGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   Q++      D+   F+PIK  R D++++K+ EMG   I PV T +T +     +R+
Sbjct: 66  RCTVQTKPLQMPPDLWLCFAPIKKTRTDFIVEKATEMGASKICPVQTEFTNSERIKQERL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +   + L  +L +W    QI+F DET  G  +SL    A A 
Sbjct: 126 QAHAVEAAEQCGGTYVPEVIALSKLSTMLDHWPEERQIMFCDETELGVASSL----ASAS 181

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E++ LHS+P    +SLGPRILR+DTAAVAAM + QA  GDW
Sbjct: 182 RGPWAILIGPEGGFSPAERKRLHSMPEAHVVSLGPRILRADTAAVAAMTIWQAALGDW 239


>gi|297183994|gb|ADI20114.1| uncharacterized protein conserved in bacteria [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 243

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I S + RLFVD PL          DQ +YL +V+R+  GD I +FNGKDGEW + + +
Sbjct: 1   MNIRSKI-RLFVDTPLGEGQSILLDRDQANYLFNVMRLNIGDYISVFNGKDGEWQADVLH 59

Query: 61  VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K     V +YQS  Q    D+  +F+PIK  R D++++K+ EMG+  I PV T YT +
Sbjct: 60  ANKRKGILVAKYQSMQQLNPPDLWLLFAPIKKTRTDFIVEKATEMGVSRIFPVNTDYTNS 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R+++++I AAEQC    +P +   + L  +LK+W  +  ++F DE    E    
Sbjct: 120 DRIKQSRLQSHSIEAAEQCGGTYVPPVDELSKLTSILKDWPKDRCLIFCDENKVGEAV-- 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K    +     AILIGPEGG+   E + L SL FVT +SLGPRILR+DTA VAA+A+ Q 
Sbjct: 178 KTFKSSVCDKWAILIGPEGGFSKNEIKYLKSLEFVTSISLGPRILRADTAVVAALAIWQK 237

Query: 240 ICGDW 244
             GDW
Sbjct: 238 EIGDW 242


>gi|16127645|ref|NP_422209.1| hypothetical protein CC_3415 [Caulobacter crescentus CB15]
 gi|221236464|ref|YP_002518901.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter crescentus
           NA1000]
 gi|13425129|gb|AAK25377.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965637|gb|ACL96993.1| surface protein [Caulobacter crescentus NA1000]
          Length = 238

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 131/237 (55%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67
           RLFV   L        + DQ  YL  V+R+  G  +LLFNG+DGEW +  +    +    
Sbjct: 3   RLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGAELLLFNGRDGEWRATLVEATKRGCLL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           K E Q+R  T   D+  I + +K  R++ +++K+ E+G   +R  ITR T      + R+
Sbjct: 63  KAEEQTRPMTLGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLGRL 122

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               + AAEQ   L +P +  P  L+ +L  WD   ++VF DE   +   +E L      
Sbjct: 123 DAIAMEAAEQTGRLDVPEVADPEKLDKILDAWDPARRLVFCDEGGDARPMIEALSGTTG- 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+  EE+E L  L FVTP+SLGPRILR+DTAA++AM L QA  GDW
Sbjct: 182 -PAAILIGPEGGFAPEERERLRGLAFVTPVSLGPRILRADTAAISAMTLWQAAAGDW 237


>gi|83950615|ref|ZP_00959348.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM]
 gi|83838514|gb|EAP77810.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM]
          Length = 234

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 131/222 (59%), Gaps = 4/222 (1%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           DQ +YL +V+R+ +G ++ LFNG+DG W ++++  GK     +V  Q+  Q    D+  +
Sbjct: 4   DQANYLFNVMRLDQGASVTLFNGRDGAWRAEVAERGKRGGALQVAEQTAPQRNPPDLWLL 63

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+PIK  R D++++K+ EMG   I PV T +T +     DR++ + I AAEQC    +P 
Sbjct: 64  FAPIKKARTDFIVEKAAEMGASRILPVQTEFTNSERIRQDRLQAHAIEAAEQCGGTFVPE 123

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENS-LEKLHAIAHIPNV--AILIGPEGGYHS 202
           +     L+ LL +W    Q++F DE      S L    A +       AILIGPEGG+  
Sbjct: 124 VADLARLDRLLSDWPEERQLMFCDEALFDRPSPLTNGDATSSGTGTPWAILIGPEGGFSD 183

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            E+  LH+LPF  P+SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 184 AERSRLHALPFAHPVSLGPRILRADTAAVAAMTLWQDRLGDW 225


>gi|114570791|ref|YP_757471.1| 16S ribosomal RNA methyltransferase RsmE [Maricaulis maris MCS10]
 gi|114341253|gb|ABI66533.1| protein of unknown function DUF558 [Maricaulis maris MCS10]
          Length = 254

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 12/248 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RLF+D PL        + +  HYL +V+R  EGD + +FNG+DGEW + I++   K    
Sbjct: 6   RLFIDAPLSASAAIPLAREDAHYLINVMRRGEGDVVRVFNGRDGEWSAVIAHASRKGAGL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            V  Q+R Q    D+  +F+P++ ++ + +++K+ E+G   I PV+T  TQ+     +R+
Sbjct: 66  TVADQTRPQQGVPDLWLMFAPVRRSKTELIVEKATELGAAVIAPVVTERTQSDRIKFERL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-----------GSEN 176
           +  T  AAEQ + L LP +     L  +L NW  +  ++F DE+            G   
Sbjct: 126 QAITKEAAEQTERLDLPELRTSEKLAAVLDNWPDDRLLIFCDESGDEADAAWGGARGRGQ 185

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +    A A     AILIGPEGG+   E++ L SL  V P++LGPRILR++TAA+AA+ +
Sbjct: 186 PMAAALAGAGDRPAAILIGPEGGFSPAERDRLRSLQHVVPVTLGPRILRAETAAIAALTI 245

Query: 237 VQAICGDW 244
            Q+ CGDW
Sbjct: 246 WQSTCGDW 253


>gi|323137857|ref|ZP_08072932.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242]
 gi|322396860|gb|EFX99386.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242]
          Length = 246

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 2/238 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           +RLFV+  L          +  +YL +VLR++EGD I+LFNG+DGE+ +++  V + S R
Sbjct: 9   QRLFVESALAPGADVLPPAEALNYLLNVLRLREGDPIVLFNGRDGEFRAELREVTRRSAR 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V  Q R QT ++D+ Y F+P+K  RLDYM QK+ EMG G + PV+TR TQ    N  R
Sbjct: 69  LAVGAQLRPQTPRADLDYCFAPLKQARLDYMAQKATEMGAGRLLPVVTRRTQVRRVNTSR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   + AAEQC +L +P +     L   L  +     +VF DE     N +  L A   
Sbjct: 129 LRANAVEAAEQCGVLAVPEVGEAADLPEFLAGFPAGRLLVFCDEDAPIANPVAAL-AGRE 187

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              +++L+GPEGG+   E+E++  LP V  LSLGPR+LR+DTAAVAA+A+VQA  GDW
Sbjct: 188 GEGISLLVGPEGGFDDVERESIARLPNVVRLSLGPRVLRADTAAVAALAVVQATIGDW 245


>gi|260427823|ref|ZP_05781802.1| surface protein [Citreicella sp. SE45]
 gi|260422315|gb|EEX15566.1| surface protein [Citreicella sp. SE45]
          Length = 269

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 141/245 (57%), Gaps = 4/245 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +++ +   RLFVD PL        + +Q HYL  V+R+  G  ILLFNG+DGEWL +++ 
Sbjct: 27  VRLMTAKVRLFVDHPLGAGQPVPLTREQAHYLFSVMRLGAGAPILLFNGRDGEWLCEVTE 86

Query: 61  VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK     V + Q+R Q    D+  +F+PIK  R D++++K+VE+G+  + PV T++T +
Sbjct: 87  AGKRGGEAVCDTQTRPQQMPPDLWLLFAPIKKARTDFIVEKAVELGVRRLLPVQTQFTNS 146

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR++ + + AAEQC  L +P +     L+ LL +W     ++F DE   +E    
Sbjct: 147 ERIRQDRLQAHAVEAAEQCGALFVPEVAELARLDRLLADWPAGRALLFCDE---AEAGSR 203

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                A     A+LIGPEGG+   E+  L ++     ++LGPRILR+DTA V+A+ L Q 
Sbjct: 204 AAALDAAPAPAAVLIGPEGGFADAERARLGAMDETRVIALGPRILRADTATVSAITLWQV 263

Query: 240 ICGDW 244
            CGDW
Sbjct: 264 ACGDW 268


>gi|254421059|ref|ZP_05034783.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas
           sp. BAL3]
 gi|196187236|gb|EDX82212.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas
           sp. BAL3]
          Length = 298

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 143/287 (49%), Gaps = 46/287 (16%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
            + + RL V  PL        + DQ  YL  V+R+K GD +L+FNG+DGEW   ++ V  
Sbjct: 10  KADMIRLHVPSPLAAAAAVAPTLDQSRYLTQVMRLKVGDELLVFNGRDGEWRCTVAEVLK 69

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           K +  + E Q+R QT   D++ I + +K  R++ +++K+ E+G   +R V+T+ T     
Sbjct: 70  KGVILRAEEQARPQTYGPDLELIVAVVKKARVETIVEKAAELGARRVRLVLTKRTNADRI 129

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------- 175
            +DR+      AAEQ   L +P +  P  L+ LL  W+   +++F DET G+        
Sbjct: 130 RLDRLDAIAEEAAEQTGRLDVPPVDDPVKLDALLDEWEAGRRLMFCDETGGAPAMRALAP 189

Query: 176 ------------------NSLEKLHAIAHI--------------------PNVAILIGPE 197
                                E+  A+                       P  +ILIGPE
Sbjct: 190 YSPSPLRGGALARSDDGVGRAEQPDALPGPAHPASAAPSPPSPDGEGEGQPKWSILIGPE 249

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG+  EE E L SLPF T +SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 250 GGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 296


>gi|261313181|ref|ZP_05952378.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella
           pinnipedialis M163/99/10]
 gi|261302207|gb|EEY05704.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella
           pinnipedialis M163/99/10]
          Length = 204

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 2/204 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLH 209
             P+  +LIGPEGG+  EE++ LH
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLH 203


>gi|254464533|ref|ZP_05077944.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
           Y4I]
 gi|206685441|gb|EDZ45923.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
           Y4I]
          Length = 221

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 2/219 (0%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYI 85
           DQ HYL  V+R+  G  + LFNGKDGEWL++++  GK     V + Q++      D+  +
Sbjct: 4   DQAHYLFGVMRLAAGAAVALFNGKDGEWLAEVAEAGKRGGTLVCQEQTKPLQLPPDLWLL 63

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+PIK  R D++++K+ EMG   I PV T +T +     DR++ + + AAEQC    +P 
Sbjct: 64  FAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSERIRQDRLQAHAVEAAEQCGGTYVPE 123

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           +     L  LL  W    Q++F DE     N+L+           AILIGPEGG+   E+
Sbjct: 124 VADSQKLSRLLDQWPRERQLMFCDE-AEVGNALQLAAETQKDVPWAILIGPEGGFSEAER 182

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + LH+LP    +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 183 KRLHALPQSHVVSLGPRILRADTAAVAAMTLWQQALGDW 221


>gi|77464587|ref|YP_354091.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           2.4.1]
 gi|77389005|gb|ABA80190.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 257

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 142/252 (56%), Gaps = 18/252 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL        + DQ HYL  V+R+  G  + LFNG+DGEW ++++  GK     
Sbjct: 7   RLYVEQPLGPGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+       D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  LCKDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +   T LE LL +W  + +I++ DE+  G+   L  L A   
Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGL--LEAAGG 184

Query: 187 I-----------PNV---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                       P+    AILIGPEGG+  EE+  L  +  V P+SLGPRILR+DTAAVA
Sbjct: 185 FEARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVA 244

Query: 233 AMALVQAICGDW 244
           A+ L Q++ GDW
Sbjct: 245 ALTLWQSVLGDW 256


>gi|56698449|ref|YP_168823.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria pomeroyi DSS-3]
 gi|56680186|gb|AAV96852.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 251

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 136/246 (55%), Gaps = 10/246 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+  L      + S DQ HYL  V+R+  GD + LFNG+DGEW +++   GK     
Sbjct: 6   RLYVEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGEL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             E QS       D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  LCESQSAPLRMPPDLWLLFAPIKKARTDFIVEKAAEMGAARIVPVQTEFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKL----- 181
           + + + AAEQC    +P +     L  LL  W    Q++F DET  G  ++L  L     
Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLGPLLDRWPAERQLMFCDETLAGRSSALSGLLAGQG 185

Query: 182 -HAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +A    P+   AILIGPEGG+   E+  L +LP    +SLGPRILR+DTAAVAA+ L Q
Sbjct: 186 ENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILRADTAAVAALTLWQ 245

Query: 239 AICGDW 244
              GDW
Sbjct: 246 QALGDW 251


>gi|254293386|ref|YP_003059409.1| 16S ribosomal RNA methyltransferase RsmE [Hirschia baltica ATCC
           49814]
 gi|254041917|gb|ACT58712.1| protein of unknown function DUF558 [Hirschia baltica ATCC 49814]
          Length = 256

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 146/252 (57%), Gaps = 12/252 (4%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S + RLFV   L +      + +Q +YL  VLR+ + D + +FNG+DGEW + ++ V +S
Sbjct: 2   STIPRLFVKADLTLGAPIALTSEQANYLFRVLRLSKNDAVRVFNGRDGEWRASVTEVMRS 61

Query: 65  IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             F  +E     Q    D+Q +F+P+K    D++++K+ E+G+  I+PVIT+ TQ +   
Sbjct: 62  AGFLCLEELIVPQAVIGDLQLLFAPLKKTCTDFVVEKATELGVTMIQPVITKRTQTSTVR 121

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SEN----- 176
           + R+      AAEQ + L +P +  P  L   L  WD N ++VF DE     +EN     
Sbjct: 122 VSRLEKIVEEAAEQTERLDIPLVQEPIQLLEALGKWDKNRRLVFCDEAGDDPTENWGGDV 181

Query: 177 --SLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             +   + AI+ + +   AILIGPEGG+  EE++ L    +V P++LGPRILR++TAAV+
Sbjct: 182 GRARPMMEAISELKDGLAAILIGPEGGFSPEERKYLRQQDYVIPVTLGPRILRAETAAVS 241

Query: 233 AMALVQAICGDW 244
           A+ L QA  GDW
Sbjct: 242 ALTLWQAARGDW 253


>gi|163745648|ref|ZP_02153008.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45]
 gi|161382466|gb|EDQ06875.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45]
          Length = 219

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 127/220 (57%), Gaps = 6/220 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIRFKVEYQSRSQTKQSDVQY 84
           +Q HYL  V+R   G  +LLFNG+DGEWL++++  GK   +   VE Q+R      D+  
Sbjct: 4   EQAHYLFGVMRQALGAGVLLFNGRDGEWLAEVTEAGKRGGVLTCVE-QTRPLQMPPDLWL 62

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
           +F+PIK  R D++++K+ EMG   I PV+T +T        R++ + + AAEQC    +P
Sbjct: 63  LFAPIKKTRTDFIVEKAAEMGASRIVPVMTEFTNAGRVQQTRLQAHAVEAAEQCGGTYVP 122

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +     L  LL  WD + QI+F DE    E+    L A A  P  AILIGPEGG+   E
Sbjct: 123 EVAEAEKLGRLLDRWDTSRQIMFCDEALAGESG--ALPADAQGP-WAILIGPEGGFSEAE 179

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  LH       ++LGPRILR+DTAAVAAM + Q   GDW
Sbjct: 180 RMRLHGFDHAHAVTLGPRILRADTAAVAAMTMWQQALGDW 219


>gi|126463427|ref|YP_001044541.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105091|gb|ABN77769.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 257

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 141/252 (55%), Gaps = 18/252 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL        + DQ HYL  V+R+  G  + LFNG+DGEW ++++  GK     
Sbjct: 7   RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAETGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+       D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  LCTDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +   T LE LL +W  + +I++ DE+  G+   L  L A   
Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGL--LEAAGG 184

Query: 187 I-----------PNV---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                       P+    AILIGPEGG+  EE+  L  +  V P+SLGPRILR+DTAAVA
Sbjct: 185 FEARGFEEGPKRPSPRPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVA 244

Query: 233 AMALVQAICGDW 244
           A+ L Q++ GDW
Sbjct: 245 ALTLWQSVLGDW 256


>gi|332559480|ref|ZP_08413802.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           WS8N]
 gi|332277192|gb|EGJ22507.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           WS8N]
          Length = 257

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 18/252 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL        + DQ HYL  V+R+  G  + LFNG+DGEW ++++  GK     
Sbjct: 7   RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
              +++       D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  LCTHRTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +   T LE LL +W  + +I++ DE+  G+   L  L A   
Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGL--LEAAGG 184

Query: 187 I-----------PNV---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                       P+    AILIGPEGG+  EE+  L  +  V P+SLGPRILR+DTAAVA
Sbjct: 185 FEARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVA 244

Query: 233 AMALVQAICGDW 244
           A+ L Q++ GDW
Sbjct: 245 ALTLWQSVLGDW 256


>gi|126740599|ref|ZP_01756286.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6]
 gi|126718400|gb|EBA15115.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6]
          Length = 261

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 136/253 (53%), Gaps = 18/253 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL +        DQ HYL  V+R   G ++ LFNG+DGEW ++IS  GK     
Sbjct: 10  RLYVEHPLGVGQSIPLEKDQAHYLFGVMRQALGGHVALFNGRDGEWQAEISEAGKRGGTL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               QS+      D+  IF+PIK  R D++++K+ EMG   I PV T YT +     DR+
Sbjct: 70  TCIEQSKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGAAKILPVGTEYTNSERIRQDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-----------TCGSEN 176
           + + + AAEQC    +P +     L  LL +W    Q++F DE           T G   
Sbjct: 130 QAHAVEAAEQCGGTYVPEVCDLQKLSRLLDDWPAKRQLMFCDEAEVGQQRFLDLTQGGGT 189

Query: 177 SLEKLHAIAHIPNV-----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             ++  A   +P       AILIGPEGG+  +E++ LH++     +SLGPRILR+DTAAV
Sbjct: 190 GADR-SASEPVPGAVSQPWAILIGPEGGFSDKERKRLHAMEQAHVVSLGPRILRADTAAV 248

Query: 232 AAMALVQAICGDW 244
           AAM + Q   GDW
Sbjct: 249 AAMTVWQQTLGDW 261


>gi|254475767|ref|ZP_05089153.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11]
 gi|214030010|gb|EEB70845.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11]
          Length = 242

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 134/239 (56%), Gaps = 6/239 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+ PL          DQ HYL  V+R   G  + LFNG+DGEW ++I+  GK     
Sbjct: 6   RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQAVGGQVSLFNGRDGEWRAEIAEAGKRNGLL 65

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V + QSR      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  VCQEQSRPLMLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSDRIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKL-HAIA 185
           + + + AAEQC    +P +     L  +L  W    Q++F DE   G+  +L    HA A
Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLSRVLDQWPQERQLMFCDEAEVGTALTLAAADHAKA 185

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AI+IGPEGG+   E++ LH LP    +SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 186 ---PWAIVIGPEGGFSEAERKRLHGLPQSHVVSLGPRILRADTAAVAALTIWQQAYGDW 241


>gi|163738856|ref|ZP_02146269.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis
           BS107]
 gi|161387661|gb|EDQ12017.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis
           BS107]
          Length = 242

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 136/238 (57%), Gaps = 4/238 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL          DQ HYL  V+R   G  +LLFNG+DGEW ++++   K S   
Sbjct: 6   RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+R      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +     L  LL +W    Q++F DE   GS  +L    A A 
Sbjct: 126 QAHAVEAAEQCGGTYVPEVADLQKLSRLLDHWPEERQLMFCDEAEVGSALALASETA-AQ 184

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P  AI+IGPEGG+   E++ LH+LP    +SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 185 AP-WAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241


>gi|163795742|ref|ZP_02189707.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199]
 gi|159179038|gb|EDP63573.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199]
          Length = 253

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 140/241 (58%), Gaps = 7/241 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RL+V  PL           Q HYL  VLR+  G+ + LFNG+DGEWL++I  +GK     
Sbjct: 8   RLYVTAPLAEGAVIGLESAQAHYLRSVLRLGPGEAVALFNGRDGEWLARIDGIGKGWASL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            V  Q+  Q  + D+   F+PIK  R+D+  QK+ E+G   + PV+TR+T     N DR+
Sbjct: 68  VVANQTHPQCPEPDLWLAFAPIKRARIDFTAQKATELGASLLWPVMTRHTMVDRVNTDRL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ D LT+P +  PT+L+ L+  W  +  ++  DE+       E L A    
Sbjct: 128 TANAIEAAEQSDRLTVPEVREPTSLDKLIAEWPEDRALLLCDESGTGLGIAEALAAAG-- 185

Query: 188 PNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           P+V      +IGPEGG+  EE + L  LPFVT + LGPR+LR+DTAA+AA+A+ QA+ GD
Sbjct: 186 PSVRRRAGFVIGPEGGFAQEELDRLRKLPFVTAVGLGPRLLRADTAALAALAVWQAVAGD 245

Query: 244 W 244
           W
Sbjct: 246 W 246


>gi|294675943|ref|YP_003576558.1| hypothetical protein RCAP_rcc00386 [Rhodobacter capsulatus SB 1003]
 gi|294474763|gb|ADE84151.1| protein of unknown function DUF558, methyltransferase predicted
           [Rhodobacter capsulatus SB 1003]
          Length = 241

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL V  PL        S DQ +YL  V+R+  GD + LFNG+DGEW +++    K     
Sbjct: 7   RLCVTHPLGPGQAVPLSPDQANYLFAVMRLGPGDRVALFNGRDGEWTAEVVEGSKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
                +  Q    D+  +F+PIK  R D++++K+ E+G   I PV T +T       DR+
Sbjct: 67  ACLGLAAPQLNPPDLWLLFAPIKKERTDFIVEKAAELGCAKILPVQTEFTNAARIKQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ +LK+W+   +I++ DE+       + L  +A  
Sbjct: 127 QAHALEAAEQCLGTYVPEVSDLQPLQKVLKSWNPARRILWGDESL--VGPAQTLAGLAPG 184

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AIL+GPEGG+   E+  L +LPFVTP+SLGPRILR+DTAA AA+ L Q+  GDW
Sbjct: 185 P-WAILVGPEGGFSETERHQLRALPFVTPVSLGPRILRADTAACAAITLWQSSLGDW 240


>gi|163741896|ref|ZP_02149286.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10]
 gi|161385069|gb|EDQ09448.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10]
          Length = 242

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/238 (39%), Positives = 137/238 (57%), Gaps = 4/238 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL          DQ HYL  V+R   G  +LLFNG+DGEW ++++   K S   
Sbjct: 6   RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+R      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +     L  +L +W    Q++F DE   GS  +L +  A+  
Sbjct: 126 QAHAVEAAEQCGGTYVPEVVDLQKLSRVLDHWPEERQLMFCDEAEVGSALALARDTAV-Q 184

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P  AI+IGPEGG+   E++ LH+LP    +SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 185 AP-WAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241


>gi|304393152|ref|ZP_07375080.1| surface protein [Ahrensia sp. R2A130]
 gi|303294159|gb|EFL88531.1| surface protein [Ahrensia sp. R2A130]
          Length = 255

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 152/245 (62%), Gaps = 5/245 (2%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +I    +R F    L      +    + +++ +VLRM +GD +LLFNG+DGEW + +   
Sbjct: 13  RIDFTTRRFFTPEALGAGGHIEPGRAEANHVLNVLRMGDGDPLLLFNGRDGEWRATVQRE 72

Query: 62  G-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G K   F +  Q+R Q +   ++ +F+P+K  RL+YMIQK+VEMG G ++PV+T YTQ  
Sbjct: 73  GRKKATFVLGEQTRVQPELPTLRLLFAPLKQARLEYMIQKAVEMGAGHLQPVMTAYTQMR 132

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLE 179
             N++R+ T+ + AA+QC +L LP +Y   +++  + +      ++F DE   G+  +L+
Sbjct: 133 KVNIERMETHVVEAAQQCGVLALPQVYDVLSMQDAVADCG---TVIFCDEMEAGTGGALD 189

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +     +A+LIGPEGG+  EE+E LH+   V  + LGPRILR+DTAAVAA+ALVQA
Sbjct: 190 ILRDLTITAPLAVLIGPEGGFSPEEREWLHAQSHVHAIPLGPRILRADTAAVAALALVQA 249

Query: 240 ICGDW 244
             GDW
Sbjct: 250 ARGDW 254


>gi|83854893|ref|ZP_00948423.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1]
 gi|83842736|gb|EAP81903.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1]
          Length = 240

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 130/237 (54%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL           Q HYL  V+R   G ++LLFNG DGEW ++++  GK     
Sbjct: 6   RLYVDHPLGQGQSVPLDKAQAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAGKRGGVL 65

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V   Q++      D+  IF+PIK  R D++++K+ EMG   I PV + +T       DR+
Sbjct: 66  VCAEQTKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGRVQRDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ L+  W+    ++F DE    E   E+  A A  
Sbjct: 126 QAHAVEAAEQCGGTFVPEVADMVRLDRLIDRWEPERSLMFCDEALAGE---EEGLASARP 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+  L  L +  P++LGPRILR+DTAAVAAM L Q   GDW
Sbjct: 183 GPWAILIGPEGGFSDSERVRLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTLGDW 239


>gi|84499775|ref|ZP_00998063.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597]
 gi|84392919|gb|EAQ05130.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597]
          Length = 241

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD  L        + DQ HYL  V+RM  GD + LFNG+ GEW +++   GK     
Sbjct: 7   RLYVDHALGEGQTVPLARDQAHYLFGVMRMGVGDAVALFNGRAGEWRAEVVEAGKRAGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   QS  Q    D+   F+PIK  R D++++K+ EMG   I PV T +T +    +DR+
Sbjct: 67  ECVGQSAPQMDPPDLWLAFAPIKKARTDFIVEKATEMGARRILPVQTDFTNSERVRIDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +  P  L  LL  W    Q++F DE      +     + A  
Sbjct: 127 QAHCVEAAEQCGGTFVPEVAEPVKLGTLLSGWPEGRQLMFCDEALAGGPAALPTRSDAPW 186

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+  L  +    P++LGPR+LR+DTAAVAA+ L Q   GDW
Sbjct: 187 ---AILIGPEGGFSEAERARLRGMDQAHPVALGPRVLRADTAAVAALTLWQDRLGDW 240


>gi|319403717|emb|CBI77302.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 195

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 109/173 (63%), Gaps = 1/173 (0%)

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131
           Q R Q   SD+ Y F+P+K  RLDY+IQK+VEMG+  + PVIT +TQ T  NM R+    
Sbjct: 8   QERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVITHHTQVTRINMARIEANI 67

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           I A+EQC IL+LP   P  +LE  L+NWD    + F DE   S N +  L      P + 
Sbjct: 68  IEASEQCGILSLPKCAPAVSLETFLENWDKAHALFFCDELNESYNPIPLLRKHGTKP-LG 126

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DTAAVAA+ LV A  GDW
Sbjct: 127 VLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNATMGDW 179


>gi|84515820|ref|ZP_01003181.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53]
 gi|84510262|gb|EAQ06718.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53]
          Length = 244

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 136/242 (56%), Gaps = 14/242 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RL+VD PL +      + DQ HYL  V+R+  GD + L N +DGEW + +   G K    
Sbjct: 10  RLYVDHPLGVGQSVPLNRDQAHYLFGVMRLGAGDVLSLINSRDGEWDAVVEKAGNKGGVL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDR 126
             + Q+R      D+  +F+PI+  R  ++++K+VE+G   I PV T +TQ  +    D+
Sbjct: 70  ACQAQTRPLQTPPDLWLVFAPIRKERTAFIVEKAVELGAARIIPVQTAFTQAANRIRQDK 129

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           ++ + + A+EQC    +P +     L+ LL +W  + Q++F DE          + A   
Sbjct: 130 LQAHAVEASEQCGGTFVPPVDDLAKLDRLLADWPKDRQLMFCDEAA--------IGAPVR 181

Query: 187 IPNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +P +    AILIGPEGG+   E++ L +LPF   +SLGPRILR+DTAAVAA+ L Q   G
Sbjct: 182 LPAIPGPWAILIGPEGGFSPAERDKLRALPFAHAVSLGPRILRADTAAVAALTLWQQALG 241

Query: 243 DW 244
           DW
Sbjct: 242 DW 243


>gi|99078057|ref|YP_611315.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria sp. TM1040]
 gi|99035195|gb|ABF62053.1| protein of unknown function DUF558 [Ruegeria sp. TM1040]
          Length = 246

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/244 (38%), Positives = 132/244 (54%), Gaps = 11/244 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD PL          DQ HYL  V+R+     + LFNG+DGEW ++++  GK     
Sbjct: 6   RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLSVAARVALFNGRDGEWQAEVAEAGKRGGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               QS+      D+  IF+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  ACLEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATEFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  LL +W    Q++F DE   +E        +A +
Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLPSLLDHWPAERQLMFCDE---AEIGQRLFLDVAQV 182

Query: 188 PNV-------AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                     AILIGPEGG+   E++ LH++P    +SLGPRILR+DTAAVAA+ L Q  
Sbjct: 183 EGSAGAAGPWAILIGPEGGFSDAERKRLHAMPQAHVVSLGPRILRADTAAVAALTLWQQR 242

Query: 241 CGDW 244
            GDW
Sbjct: 243 LGDW 246


>gi|319406725|emb|CBI80358.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 194

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 108/173 (62%), Gaps = 1/173 (0%)

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131
           Q R Q   SD+ Y F+P+K  RLDY+IQK+VEMG+  + PVIT +TQ T  NM R+    
Sbjct: 20  QERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVITHHTQVTRINMARIEANI 79

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           I A+EQC IL+LP   P   LE  L+NWD    + F DE   S N +  L      P + 
Sbjct: 80  IEASEQCGILSLPKCAPVVALETFLENWDKTHALFFCDELNESYNPIPLLRKHGTKP-LG 138

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DTAAVAA+ LV A  GDW
Sbjct: 139 VLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNATMGDW 191


>gi|103487756|ref|YP_617317.1| 16S ribosomal RNA methyltransferase RsmE [Sphingopyxis alaskensis
           RB2256]
 gi|98977833|gb|ABF53984.1| protein of unknown function DUF558 [Sphingopyxis alaskensis RB2256]
          Length = 249

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 6/237 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLF+D PL   +     G   HYL  V+R+K GD +LLF+ + GEWL+ ++   K S+  
Sbjct: 14  RLFIDQPLGAGSAPVIDGAAAHYLLGVMRLKAGDPVLLFDNRSGEWLAVVADAAKRSVTL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++E   R      D+   F+P+K  RLD++I+K+ E+G+  ++PV+T  T       +R+
Sbjct: 74  RIERHMRDIEAVPDLWLCFAPVKKARLDWIIEKATELGVRRLQPVMTERTIVERVRRERL 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQC    LP +  P  L  LLK W     ++FADE  G       +  +A  
Sbjct: 134 EAQIIEACEQCGRTALPALAEPVKLPQLLKAWPAERALLFADEAGGV-----PMARLAAP 188

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AIL GPEGG+   E+  L + P V  L+LGPRILR++TAA+AA +L  A  GDW
Sbjct: 189 APAAILTGPEGGFTDRERALLAAHPAVHRLALGPRILRAETAAIAATSLWMAQHGDW 245


>gi|259415138|ref|ZP_05739060.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259349048|gb|EEW60802.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 246

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 7/242 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD PL          DQ HYL  V+R+  G  + LFNG+DGEW ++++   K S   
Sbjct: 6   RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLAVGARVALFNGRDGEWQAEVAEASKRSGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               QS+      D+  IF+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  TCVEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATDFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +     L  LL +W  + Q++F DE   G    L+ + +   
Sbjct: 126 QAHAVEAAEQCGGTYVPEVADLQKLSALLDHWPEDRQLMFCDEAEVGQRLFLDAVQS-EK 184

Query: 187 IPNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            P      AILIGPEGG+   E++ L ++     +SLGPRILR+DTAAVAAM L Q   G
Sbjct: 185 PPTASGSWAILIGPEGGFSDAERKRLQAMQQAHVVSLGPRILRADTAAVAAMTLWQRALG 244

Query: 243 DW 244
           DW
Sbjct: 245 DW 246


>gi|114800139|ref|YP_760086.1| 16S ribosomal RNA methyltransferase RsmE [Hyphomonas neptunium ATCC
           15444]
 gi|114740313|gb|ABI78438.1| conserved hypothetical protein TIGR00046 [Hyphomonas neptunium ATCC
           15444]
          Length = 256

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 18/256 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGK 63
           + + RLFVD PL          +Q +YL  VLR+++G ++ LFNG+DGEW + +     K
Sbjct: 2   ATIPRLFVDAPLAEAGAVALDDEQSNYLLRVLRLEDGASVRLFNGRDGEWTATVHKTSAK 61

Query: 64  SIRFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                   Q+R+Q  Q  + +  +F+P+K ++ D +++K+ E+G   IRPV+T  TQ   
Sbjct: 62  RAEATPSRQTRTQPGQIGTRLTLLFAPVKKDQTDLILEKATELGAARIRPVLTERTQTRT 121

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---- 177
              DR R   + AAEQ + L LP I    +L+  L   +    ++F DE  G E      
Sbjct: 122 VRADRFRKIALEAAEQTERLDLPEILDLASLDAALDALEPGTAVIFCDE-AGDEAEAPWG 180

Query: 178 ---------LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    LE L  +    + AIL GPEGG+   E+  L       P+SLGPRILR++T
Sbjct: 181 GQAGRARPMLEVLEELKGR-SAAILTGPEGGFTPAERAFLRGRAETWPVSLGPRILRAET 239

Query: 229 AAVAAMALVQAICGDW 244
           AA++AM L QA+CGDW
Sbjct: 240 AAISAMTLWQAVCGDW 255


>gi|254510112|ref|ZP_05122179.1| surface protein [Rhodobacteraceae bacterium KLH11]
 gi|221533823|gb|EEE36811.1| surface protein [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           DQ HYL  V+R+  G  + LFNG+DGEWLS+++  GK         Q++      D+  +
Sbjct: 12  DQAHYLFGVMRLSVGARVALFNGQDGEWLSEVAEAGKRGGVLGCIAQTKPLQLPPDLWLL 71

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+PIK  R D++++K+ EMG   I PV T +T +     DR++ + + AAEQC    +P 
Sbjct: 72  FAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRLQAHAVEAAEQCGGTFVPE 131

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           +     L+ +L  W    Q++F DE   GS   L K          AILIGPEGG+  +E
Sbjct: 132 VAELQRLDRVLDAWPETRQLMFCDEAEVGSALRLAKQE---QNQPWAILIGPEGGFSDKE 188

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++ L +LP+   +SLGPRILR+DTA VAAM + Q   GDW
Sbjct: 189 RKRLAALPYSHTVSLGPRILRADTAVVAAMTMWQQALGDW 228


>gi|85703484|ref|ZP_01034588.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217]
 gi|85672412|gb|EAQ27269.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217]
          Length = 243

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 4/238 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67
           RL+++ PL        S  Q HYL  V+R   GD +L+FNG+ GEW +++   GK     
Sbjct: 7   RLYLEHPLGEGQTIPLSQPQAHYLFGVMRQGVGDAVLVFNGEAGEWRAEVIEAGKRGGIL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++  Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 67  QIAEQTAPQRDPPDLWLMFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +     L+ +L +W    Q++F DE   G    L +   +  
Sbjct: 127 QAHAVEAAEQCGGTYVPEVSDLHRLDRMLADWPEARQVMFCDEALAGCAEGLGR--DLPR 184

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E+  L +LP    +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 185 GAPWAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQNSLGDW 242


>gi|89056403|ref|YP_511854.1| 16S ribosomal RNA methyltransferase RsmE [Jannaschia sp. CCS1]
 gi|88865952|gb|ABD56829.1| protein of unknown function DUF558 [Jannaschia sp. CCS1]
          Length = 245

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 134/237 (56%), Gaps = 1/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL        S D  +YL +V+R+  G  + LFNG DGEW ++++  GK     
Sbjct: 8   RLFVDHPLGEAQSVPVSRDHANYLFNVMRLDAGAGVALFNGTDGEWRAEVAAKGKRGGVL 67

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V + Q+  Q    D+  +F+PIK  R D++++K+ E+G+  + PV T  T       D++
Sbjct: 68  VCKEQTAPQVMPPDMWLLFAPIKKARTDFIVEKAAELGVARVCPVRTERTNAERIRQDKL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +    +LE +L  WD    +VFADE     +S       A  
Sbjct: 128 QAHAMEAAEQCGGTYVPPVEDIRSLEKVLDGWDDRRALVFADEAEAGRSSSLAAVLAAAP 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E+  L ++P V  LSLGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 188 PPAAILIGPEGGFSDAERARLRAMPNVHVLSLGPRILRADTAAVAALTLWQEHVGDW 244


>gi|149202038|ref|ZP_01879011.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035]
 gi|149144136|gb|EDM32167.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035]
          Length = 243

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 129/237 (54%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL        +  Q HYL  V+R   GD +LLF+G+ GEW + +   GK     
Sbjct: 7   RLYVEHPLGEGQTIPLTQPQAHYLFGVMRQGVGDAVLLFDGRHGEWRADVIEAGKRGGVL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T       DR+
Sbjct: 67  QVAEQTAPQRDPPDLWLLFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNAERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ +L +W  + Q++F DE      +          
Sbjct: 127 QAHAVEAAEQCGGTFVPEVGDLHRLDRMLADWPKDRQLMFCDEGLAGHAATLAGDLPRGA 186

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E+  L +LP    +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 187 P-WAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQRALGDW 242


>gi|255264688|ref|ZP_05344030.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255107023|gb|EET49697.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 239

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 132/237 (55%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD  L        + +Q HYL  V+R    + + LFNG+DGEW +++   GK     
Sbjct: 6   RLYVDHDLGAGQSVLLTKEQAHYLFGVMRKGVDEVLSLFNGRDGEWDARVVEAGKRKGIL 65

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V E QS+      DV  +F+PIK  R D++++K+ EMG   I PV T +T +     +++
Sbjct: 66  VCEAQSKPLQLPPDVWLMFAPIKKARTDFIVEKATEMGAARIMPVQTEFTNSDRVRHEKL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             + + AAEQC    +P + P   L  +L  W  + +++F DE      ++    A A  
Sbjct: 126 VAHAVEAAEQCGGTYVPPVDPLAKLTKVLAAWPEDRKLLFCDEALVGAQAV---FAEASH 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+E L + P+VT  SLGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 183 DKWAILIGPEGGFSQAERELLGAKPYVTQASLGPRILRADTAAVAALTLWQTTQGDW 239


>gi|94496115|ref|ZP_01302693.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58]
 gi|94424294|gb|EAT09317.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58]
          Length = 248

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 135/239 (56%), Gaps = 8/239 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL V+  L         G+  HYL  V+R+K  D +LLF+G+ GEW ++   + K  +  
Sbjct: 14  RLHVETQLGDGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAARARDIRKRDLVL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   Q+R+  +  D     +PI+  R+D + +K+ E+G+  ++PV+TR       N+DR+
Sbjct: 74  ECVAQTRAPEQVPDYWLCCAPIRKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNLDRL 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAIA 185
             + + AAEQC    LP +     L+ LL NWD    + FADE+ G+  E +L      A
Sbjct: 134 HAHLVEAAEQCGRTALPDLGSLMKLDALLGNWDSRRHLFFADESGGAPLEQTLR-----A 188

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           H    A L+GPEGG+  +E++ + ++P    +SLGPRILR++TAA+AA +   AI GDW
Sbjct: 189 HPGPAAFLVGPEGGFDPQERDAIQAMPGAVAVSLGPRILRAETAAIAATSAWMAINGDW 247


>gi|83941416|ref|ZP_00953878.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36]
 gi|83847236|gb|EAP85111.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36]
          Length = 220

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 122/218 (55%), Gaps = 4/218 (1%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86
           Q HYL  V+R   G ++LLFNG DGEW ++++  GK         Q++      D+  IF
Sbjct: 5   QAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAGKRGGVLACAEQTKPLHMPPDLWLIF 64

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +PIK  R D++++K+ EMG   I PV + +T       DR++ + + AAEQC    +P +
Sbjct: 65  APIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGRVQRDRLQAHAVEAAEQCGGTFVPEV 124

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
                L+ L+  W+    ++F DE    E   E+  A A     AILIGPEGG+   E+ 
Sbjct: 125 ADMVRLDRLIDRWEPERSLMFCDEALAGE---EEGLASARPGPWAILIGPEGGFSDSERA 181

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            L  L +  P++LGPRILR+DTAAVAAM L Q   GDW
Sbjct: 182 RLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTLGDW 219


>gi|126734662|ref|ZP_01750408.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2]
 gi|126715217|gb|EBA12082.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2]
          Length = 244

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 137/247 (55%), Gaps = 8/247 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +++ +   RL+VD  L        S +Q HYL  V+R+ EG  + L NG+DG W + +  
Sbjct: 2   VRLMASKVRLYVDHALGQGQSVPLSREQAHYLFGVMRLAEGAVLSLINGRDGAWDADVVK 61

Query: 61  VGKSIR-FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK     +   Q+       DV  +F+PI+  R  ++++K+VEMG+  + PV T +TQ+
Sbjct: 62  AGKKGGILECSAQTGPLQMPPDVWLLFAPIRKERTAFIVEKAVEMGVSRVCPVQTDFTQS 121

Query: 120 TH-YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENS 177
            +    D+++T+ I AAEQC    +P +     L+ LL  W  + Q++F DE   G    
Sbjct: 122 ANRVRQDKLQTHAIEAAEQCGGTFVPPVDDLAKLDRLLAAWPEDRQLMFCDEVLIGDRVG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +         AILIGPEGG+   E++ L  LPF  P+SLGPRILR+DTAAVAA+ + 
Sbjct: 182 LPLVEG-----PWAILIGPEGGFSPAERDRLRGLPFAHPVSLGPRILRADTAAVAALTVW 236

Query: 238 QAICGDW 244
           Q   GDW
Sbjct: 237 QQALGDW 243


>gi|329851437|ref|ZP_08266194.1| RNA methyltransferase, RsmE family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840283|gb|EGF89855.1| RNA methyltransferase, RsmE family protein [Asticcacaulis
           biprosthecum C19]
          Length = 248

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 8/225 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           DQ  YLA V+R+   D + +FNG+DGEW +++S VGK +++  +  Q+R Q         
Sbjct: 24  DQSRYLAAVMRLSVDDTVSIFNGRDGEWGARLSEVGKKAVKLDLIEQTRPQPTGQGPILA 83

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
            + IK + L+Y+++K+ E+G G I+ + TR T  +H N++R+ +    +AEQ + L +P 
Sbjct: 84  VALIKRSALEYIVEKATELGAGTIQLLTTRRTNASHTNVERLVSIAKESAEQTERLDVPE 143

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENS------LEKLHAIAHIPNVAILIGPEGG 199
           I  P  L+  L     + +++F DE    E +      L+ L   A +    ILIGPEGG
Sbjct: 144 ILAPVKLDRFLAAAAFD-RLIFGDENSTHEGTRETLPLLQALKTTAAVERSVILIGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  +E+  L   P   P++LGPRILR+DTAA++A+ L QA+ GDW
Sbjct: 203 FDDDERLALRGRPDCIPVNLGPRILRADTAAISALTLYQAVVGDW 247


>gi|148555278|ref|YP_001262860.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas wittichii
           RW1]
 gi|148500468|gb|ABQ68722.1| protein of unknown function DUF558 [Sphingomonas wittichii RW1]
          Length = 210

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 128/211 (60%), Gaps = 6/211 (2%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           ++R+K GD I LF+   GEW + I  VGK ++  +VE + R +    D+  + +PIK  R
Sbjct: 1   MMRLKAGDAIALFDDMSGEWRAVIEQVGKRAVAVRVEQRMREREAVPDLWLVAAPIKKGR 60

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           +D++ +K+ E+G+   RPVITR T     N+DR+R + I AAEQC+   LP +  P  L 
Sbjct: 61  IDWVAEKACELGVARWRPVITRRTIVDRLNLDRLRAHMIEAAEQCERTALPILDEPVKLS 120

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
            +L++W  +  ++FADE    E  +    A+   P  AILIGPEGG+  EE+  + ++P 
Sbjct: 121 AMLRDWPADRALIFADE----EGGMPMAEAVKPGP-AAILIGPEGGFTDEERAAILAVPQ 175

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              +SLGPRILR+DTA  AA+AL   + GDW
Sbjct: 176 AVGVSLGPRILRADTAMAAAVALWMGLAGDW 206


>gi|332187403|ref|ZP_08389141.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17]
 gi|332012564|gb|EGI54631.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17]
          Length = 247

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 138/241 (57%), Gaps = 13/241 (5%)

Query: 9   RLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           RLFVD  L    I+  G A+    HYL  V+R K GD + LF+ + GEWL   + VGK  
Sbjct: 14  RLFVDQILAEGPIRIDGPAA----HYLVSVMRTKVGDPVKLFDDRTGEWLGVAASVGKRD 69

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           +   V  + R +    D+    +P+K  R+D++ +K+ E+G+  + PV+TR T     N 
Sbjct: 70  LTLDVTQRLREREAVPDLWLCAAPLKKGRVDWLAEKACELGVARLVPVVTRRTVVDKPNT 129

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R+R + I AAEQC    LP +  P  L  LL++W     + FADE  G    L  L A+
Sbjct: 130 ERLRAHMIEAAEQCGRTALPQVAEPVKLPALLRDWPEERALFFADENGG----LPALEAM 185

Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            AH    AILIGPEGG+ SEE+E + +LP    + LGPRILR+DTAA AA++L  A  GD
Sbjct: 186 RAHQGPAAILIGPEGGFDSEEREAIRALPSAIGIGLGPRILRADTAAAAAVSLWMAAAGD 245

Query: 244 W 244
           W
Sbjct: 246 W 246


>gi|114771337|ref|ZP_01448757.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255]
 gi|114548262|gb|EAU51149.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255]
          Length = 243

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 144/245 (58%), Gaps = 4/245 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I S + RLFVD PL        + DQ +YL +V+R+  GD I +FNGKDGEW +++  
Sbjct: 1   MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59

Query: 61  VGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K      V+ QS  Q    DV  +F+PIK  R D++++K+ EMG+  I PV T YT +
Sbjct: 60  ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKTRTDFIVEKATEMGVSRICPVFTDYTNS 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R++ ++I AAEQC    +P +   +TL  +LK+W     ++F DE    EN ++
Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGEN-VK 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            + A       AILIGPEGG+   E   L SL FVT +SLGPRILR+DTAAVAA+A+ Q 
Sbjct: 179 SMKATKS-DKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILRADTAAVAALAIWQM 237

Query: 240 ICGDW 244
             GDW
Sbjct: 238 QMGDW 242


>gi|87134653|gb|ABD25395.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 258

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 6/239 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV+ PL    +    G Q HYL  V+R+  GD ++L +   GEW+S+++ VGK  +  
Sbjct: 23  RLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLVL 82

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++E ++R + +  D     + +K    D +++K+ E+G   + PV+TR       N +R 
Sbjct: 83  EIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPERA 142

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-H 186
           RT  + AAEQC    LP +     L+ LL++W     + FADE  G    +    A + H
Sbjct: 143 RTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGG----IPAAAAFSLH 198

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
               A+L+GPEGG+   E+  + + P    ++LGPRILR +TA++A M L   + GDW+
Sbjct: 199 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 257


>gi|229324846|ref|YP_496229.2| hypothetical protein Saro_0950 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 249

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 6/239 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV+ PL    +    G Q HYL  V+R+  GD ++L +   GEW+S+++ VGK  +  
Sbjct: 14  RLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLVL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++E ++R + +  D     + +K    D +++K+ E+G   + PV+TR       N +R 
Sbjct: 74  EIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPERA 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-H 186
           RT  + AAEQC    LP +     L+ LL++W     + FADE  G    +    A + H
Sbjct: 134 RTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGG----IPAAAAFSLH 189

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
               A+L+GPEGG+   E+  + + P    ++LGPRILR +TA++A M L   + GDW+
Sbjct: 190 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 248


>gi|307296237|ref|ZP_07576064.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum
           L-1]
 gi|306878039|gb|EFN09262.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum
           L-1]
          Length = 248

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 4/221 (1%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
            G+  HYL  V+R+K  D +LLF+G+ GEW +K   + K  +  +V  Q+++     D  
Sbjct: 30  DGNPAHYLISVMRVKPDDIVLLFDGRSGEWAAKARDIRKRDLVLEVVSQTKAPENVPDFW 89

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
              +PIK  R+D + +K+ E+G+  ++PV+TR       N DR+  + + AAEQC    L
Sbjct: 90  LCCAPIKKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNFDRLHAHLVEAAEQCGRTAL 149

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +     L+ L+++W  +  + FADET G E   + L   AH    A LIGPEGG+   
Sbjct: 150 PDLSEMVKLDALIRDWPDDRWLFFADET-GGEPLADTLK--AHPGPAAFLIGPEGGFDPA 206

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E+E +  +    P+SLGPRILR++TAA+AA +    I GDW
Sbjct: 207 EREAIRGVAKAVPVSLGPRILRAETAAIAATSAWMTINGDW 247


>gi|297184217|gb|ADI20335.1| uncharacterized protein conserved in bacteria [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 243

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 144/245 (58%), Gaps = 4/245 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I S + RLFVD PL        + DQ +YL +V+R+  GD I +FNGKDGEW +++  
Sbjct: 1   MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59

Query: 61  VGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K      V+ QS  Q    DV  +F+PIK  R D++++K+ EMG+  I PV T YT +
Sbjct: 60  ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKARTDFIVEKATEMGVSRICPVFTDYTNS 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R++ ++I AAEQC    +P +   +TL  +LK+W     ++F DE    EN ++
Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGEN-VK 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            + A       AILIGPEGG+   E   L SL FVT +SLGPRILR+DTAAVAA+A+ Q 
Sbjct: 179 SMKATKS-DKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILRADTAAVAALAIWQM 237

Query: 240 ICGDW 244
             GDW
Sbjct: 238 QMGDW 242


>gi|296284223|ref|ZP_06862221.1| 16S ribosomal RNA methyltransferase RsmE [Citromicrobium
           bathyomarinum JL354]
          Length = 255

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 129/239 (53%), Gaps = 8/239 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFV+  L         G++ HYL  V+R+ EGD ++L +   GEW +++  V K  R  
Sbjct: 14  RLFVEDELGEGRTIALYGNRAHYLGKVMRVSEGDTVILCDDLTGEWAARVGQVDKR-RVD 72

Query: 69  VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           V    R + +++       P  +K +R D +++K+ E+G+ AIRPV+TR       N +R
Sbjct: 73  VTVVERLREREAVPDLWLCPALLKKDRFDLVLEKATELGVAAIRPVVTRRCVADKLNPER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA- 185
             T    AAEQC    LP +  P  L+ LL +W     + FADE  G + +     A A 
Sbjct: 133 AATIVTEAAEQCARTALPQVAGPVKLDALLADWPAERALFFADEEGGEDAA----SAFAR 188

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           H    AIL GPEGG+   E+  + +LP   P++LGPRILR +TA +AA+++  A  GDW
Sbjct: 189 HGAPAAILTGPEGGFDDAERAAIRALPQAIPITLGPRILRGETATIAAISIWMAQAGDW 247


>gi|83591910|ref|YP_425662.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574824|gb|ABC21375.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 247

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD PL      +  G Q HYL  V+R+  G  + LFNG+DGEWL+ +  +GK+    
Sbjct: 9   RLYVDAPLAAGLDVRLDGAQAHYLRDVMRLGPGAAVALFNGRDGEWLATLDTLGKAGAQA 68

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V +   R Q  +     +F+P+K    DY+++K+VE+G GA+ PV+TR TQ+     DR+
Sbjct: 69  VAQTLLRPQGDEDGPWLLFAPLKKEATDYLVEKAVELGCGALLPVMTRRTQSQKVRTDRL 128

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC+ LTLP ++ P  L  +L++W    ++    E   +  +         +
Sbjct: 129 RAQVIGAAEQCERLTLPAVFEPRPLAKVLEDWPAERRLFVLAERRDALPAARAFAGARAL 188

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              A+L+GPEGG   ++ + L +LP  TP+ LGPRILR++TAA AA+A+ QA+ GDW
Sbjct: 189 -KAALLVGPEGGLDDKDLDALLALPSSTPVGLGPRILRAETAAAAALAVWQAVAGDW 244


>gi|254486640|ref|ZP_05099845.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101]
 gi|214043509|gb|EEB84147.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101]
          Length = 240

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 129/241 (53%), Gaps = 12/241 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+  L           Q HYL  V+R   G  +LLFNGKDGEW +++   GK  R  
Sbjct: 6   RLYVEHGLGQGQSVPLDKAQAHYLFGVMRQAVGAAVLLFNGKDGEWRAEVVEAGK--RGG 63

Query: 69  VEYQSRSQTKQ----SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           V  Q  +QTK      D+  IF+PIK  R D++++K+ EMG   I PV T +T       
Sbjct: 64  V-LQCVAQTKPLQMPPDLWLIFAPIKKTRTDFIVEKAAEMGARRIVPVQTDFTNAGRVQR 122

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHA 183
           DR++ + + AAEQC    +  +     L+ L+  WD    ++F DE   GS+  L +   
Sbjct: 123 DRLQAHAVEAAEQCGATFVAEVTEMVKLDRLIDQWDAGRSLMFCDEALAGSDAVLGQSGR 182

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A      ILIGPEGG+   E+  L  L +   ++LGPRILR+DTAAVAAM + Q   GD
Sbjct: 183 GAW----GILIGPEGGFSDRERSRLRGLEYARSVTLGPRILRADTAAVAAMTVWQQAFGD 238

Query: 244 W 244
           W
Sbjct: 239 W 239


>gi|315499603|ref|YP_004088406.1| hypothetical protein Astex_2610 [Asticcacaulis excentricus CB 48]
 gi|315417615|gb|ADU14255.1| protein of unknown function DUF558 [Asticcacaulis excentricus CB
           48]
          Length = 248

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 12/227 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDV-QY 84
           DQ  Y+A V+R+ +GD I +FNG+DGEW  ++  V K  +  ++  Q+R Q    +  + 
Sbjct: 24  DQARYVAAVMRLGDGDEISVFNGRDGEWRGRLQAVSKKHVHVELIAQARPQPAAGNAPKL 83

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
           + + +K  RL+ +I+K+ E+G+G I+ +ITR T   H N+ R++     AAEQ + L +P
Sbjct: 84  LIALVKRGRLETIIEKATELGVGEIQLLITRRTNADHTNLARLQLIAQEAAEQTERLDVP 143

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-------LEKLHAIAHIPNVAILIGPE 197
            +  P  LE  LK       +++ DE    E         LE L  +     V+ILIGPE
Sbjct: 144 QVLAPVKLEVYLKAASET--LIYGDEDSTHETGERTISPMLEALSGLGE-GAVSILIGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG+ + E++TL   P    ++LGPRILR+DTAA++A+ L QA+ GDW
Sbjct: 201 GGFDAVERQTLSVQPNTVAVNLGPRILRADTAAISALTLYQAVRGDW 247


>gi|114763454|ref|ZP_01442861.1| hypothetical protein 1100011001336_R2601_17754 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543992|gb|EAU47003.1| hypothetical protein R2601_17754 [Roseovarius sp. HTCC2601]
          Length = 208

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 123/210 (58%), Gaps = 4/210 (1%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRL 94
           +RM  G  ILLFNG DGEW ++I+  GK     V + Q+R+Q    D+  +F+PIK  R 
Sbjct: 1   MRMATGGEILLFNGHDGEWRAEITEAGKKAGTAVCDTQTRAQAMPPDLWLLFAPIKKART 60

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           D++++K+VE+G+  I PV T++T +     DR++ + + AAEQC  L +P +     L+ 
Sbjct: 61  DFIVEKAVELGVRRILPVQTQFTNSERIRQDRLQAHALEAAEQCGALFVPEVAELVRLDR 120

Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
           LL +W     ++F DE   +E         +     A+LIGPEGG+   E+  L  +   
Sbjct: 121 LLADWPDERGLLFCDE---AEAGSRAGALASAPAPSAVLIGPEGGFSDAERTRLGRMEQT 177

Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             ++LGPRILR+DTAAVAA+ L Q+  GDW
Sbjct: 178 RVIALGPRILRADTAAVAALTLWQSQSGDW 207


>gi|154251112|ref|YP_001411936.1| hypothetical protein Plav_0656 [Parvibaculum lavamentivorans DS-1]
 gi|154155062|gb|ABS62279.1| protein of unknown function DUF558 [Parvibaculum lavamentivorans
           DS-1]
          Length = 264

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 144/251 (57%), Gaps = 8/251 (3%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +  S   RL+++ PL    +     DQ HYL +VLRM EG  +LLFNG+DGEW ++I+  
Sbjct: 14  RCASGKARLYIEEPLNAGARLTLERDQSHYLVNVLRMGEGAAVLLFNGRDGEWAARIAEA 73

Query: 62  -GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
             K+   ++  Q+R Q    D+  +F+P+K  RLD++ QK+ EMG   I+PVIT  T  T
Sbjct: 74  HKKNCVLELTAQTRVQEPLPDIWLLFAPVKKARLDFIAQKATEMGAAVIQPVITERTVVT 133

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENS 177
               +R++   + AAEQC ++ +P +     L  LL  W+      +I+F DE+     +
Sbjct: 134 RLKDERLQANAVEAAEQCGLVAVPEVREAEKLGSLLARWEEAAPGRRILFCDESEEPGAA 193

Query: 178 LEKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            E L  +A        +AILIGPEGG+  +E++ L        LSLGPRI+R+DTAA+AA
Sbjct: 194 REALARLAEEGWRGAPLAILIGPEGGFSPKERDMLRGRKDTAVLSLGPRIMRADTAAIAA 253

Query: 234 MALVQAICGDW 244
           +A+V    GDW
Sbjct: 254 LAVVGLALGDW 264


>gi|159045639|ref|YP_001534433.1| 16S ribosomal RNA methyltransferase RsmE [Dinoroseobacter shibae
           DFL 12]
 gi|157913399|gb|ABV94832.1| protein of unknown function DUF558 [Dinoroseobacter shibae DFL 12]
          Length = 249

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 130/239 (54%), Gaps = 4/239 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL        SG Q HYL  V+R   G+ + LFNG  G W +++   GK     
Sbjct: 11  RLYVEHPLGQGQTVPLSGAQAHYLFGVMRRGVGEVVTLFNGHAGAWAARVVEAGKRGGVL 70

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +VE Q+  Q    D+   F+PIK  R D++++K+ EMG   I PV T +T       DR+
Sbjct: 71  EVETQTAPQRDPPDLWLCFAPIKKARTDFIVEKAAEMGARRIVPVQTAFTNAERIRRDRL 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ LL +W  +  ++F DE    E +       A +
Sbjct: 131 QAHAVEAAEQCGGTFVPEVADLVGLDRLLSDWPSDRSLMFCDEALAEEGAAAAADTPA-L 189

Query: 188 PN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P+   AILIGPEGG+   E+  L ++P    + LGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 190 PDGPWAILIGPEGGFSEPERARLRAMPQAQSVRLGPRILRADTAAVAALTLWQIRYGDW 248


>gi|254437857|ref|ZP_05051351.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 307]
 gi|198253303|gb|EDY77617.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 307]
          Length = 234

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 135/237 (56%), Gaps = 6/237 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           ++VD PL  + +   S +Q HYL  V+R+  G ++ LFNG+DGEW + ++   K S    
Sbjct: 1   MYVDHPLGPQERVALSREQAHYLFGVMRLDVGADVSLFNGRDGEWRALVAAASKKSGVLD 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRV 127
              Q++      D+  +F+PIK +R  ++++K+ E+G   I P+ T YTQ+ +    DR+
Sbjct: 61  CVVQTKPLQMPPDLWLVFAPIKKDRTSFIVEKAAELGAARIVPLQTEYTQSANRVRQDRL 120

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +        +L  W+   +I+F DE    +  +   +A    
Sbjct: 121 QAHALEAAEQCGGTYVPEVAELQKFAKMLDTWNPTRRILFCDEAMVDKPLILPTNAGPW- 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+  +E++ L+S+     +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 180 ---AILIGPEGGFSDKERDRLNSMLCAHAISLGPRILRADTAAVAAMTLWQQAMGDW 233


>gi|294010080|ref|YP_003543540.1| hypothetical protein SJA_C1-00940 [Sphingobium japonicum UT26S]
 gi|292673410|dbj|BAI94928.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 253

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 130/237 (54%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL V+  L         G+  HYL  V+R+K  D +LLF+G+ GEW +K   + K  +  
Sbjct: 19  RLHVETQLGEGVSVPVDGNPAHYLISVMRVKADDIVLLFDGRSGEWAAKARDIRKRDLVL 78

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  ++R      D     +PI+  R+D + +K+ E+G+  ++PV+TR       N+DR+
Sbjct: 79  EVVSRTRPPEDVPDFWLCCAPIRKGRIDLVAEKACELGVARLQPVLTRRAVVDKLNLDRL 138

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             + + AAEQC    LP +     L+ LL++W     + FADE+ G E   + L   AH 
Sbjct: 139 YAHLVEAAEQCGRTALPELGQMAKLDALLRDWPEGRWLFFADES-GGEPLADTLK--AHP 195

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              A LIGPEGG+   E+E +  +    P+SLGPRILR++TAA+AA +    I GDW
Sbjct: 196 GPAAFLIGPEGGFDPAEREAIRRVAKAIPVSLGPRILRAETAAIAATSAWMTINGDW 252


>gi|86139068|ref|ZP_01057639.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193]
 gi|85824299|gb|EAQ44503.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193]
          Length = 259

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 30/248 (12%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           +Q HYL  V+R + G  + LFNG DGEW ++++  GK         QS++     D+  I
Sbjct: 12  EQAHYLFGVMRQRLGGAVALFNGFDGEWQAEVTEAGKRGGTLTCVAQSKTLQMPPDLWLI 71

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+PIK  R D++++K+ EMG   I PV T YT +     DR++ + + AAEQC    +P 
Sbjct: 72  FAPIKKARTDFIVEKAAEMGAARILPVGTDYTNSERIRQDRLQAHAVEAAEQCGGTYVPE 131

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADET-----------------------------CGSEN 176
           +     L  LL +W    Q++F DE                               G++ 
Sbjct: 132 VCDLQKLSQLLDHWPDERQLMFCDEAEVGQRRFLEVARGSAGPEGGREAPALGGGTGADR 191

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S  +      +   AILIGPEGG+  +E++ LH++     +SLGPRILR+DTAAVAAM L
Sbjct: 192 SASEPFGKLSLQPWAILIGPEGGFSDKERKRLHAMAQAHVVSLGPRILRADTAAVAAMTL 251

Query: 237 VQAICGDW 244
            Q   GDW
Sbjct: 252 WQQTLGDW 259


>gi|85708013|ref|ZP_01039079.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1]
 gi|85689547|gb|EAQ29550.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1]
          Length = 253

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RLFV+  L         G+Q HYL  V+R+  GD ++L +   GEW +++  V K  +  
Sbjct: 14  RLFVEDELGDGRIFALEGNQAHYLGKVMRVSPGDTVILCDNITGEWAARVGQVEKRRVDL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            V    R + +  D+    + +K +R D++++K+ E+G   I+P+ITR       NM+R 
Sbjct: 74  TVTDHLRPRGEVPDLWLCPALLKKDRFDFVLEKATELGSARIQPMITRRCVADKLNMERA 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R     AAEQC    LP I  P  L+ LL +W     I FADE  G E++ +      H 
Sbjct: 134 RIIATEAAEQCARTALPDIAEPVKLDALLADWPSERAIFFADEE-GGEHAADAF--CFHE 190

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+  + + P    +SLGPRILR +TAA+AA+++  A  GDW
Sbjct: 191 GPAAILIGPEGGFDDAERAAIRAHPQARAISLGPRILRGETAAIAALSVWMAEAGDW 247


>gi|326386680|ref|ZP_08208302.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208995|gb|EGD59790.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 255

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFV  PL         G Q HYL  V+R+  GD ++L +   GEW ++   VGK  +  
Sbjct: 18  RLFVTGPLGDGVSVTIEGGQAHYLVRVMRIAPGDVVVLCDDATGEWATQAGPVGKRDLVL 77

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               + R +    D     + +K +R D +++K+ E+G+  +RP++ R       N +R 
Sbjct: 78  TCTTRLREREDVPDFWLCPALLKKDRFDLVLEKASELGVARLRPMLARRCVADKLNPERA 137

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC    LP    P  +E LL +W  +  + FADE  G+  +       AH 
Sbjct: 138 RATLIEAAEQCARTALPQCDAPVRIEALLADWPQDRTLFFADENGGAPAAA---SFAAHP 194

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               +L+GPEGG+   E+  + + P   P++LGPRILR +TAA+AA +L   +CGDW
Sbjct: 195 GPAGLLVGPEGGFDEAERAAIRAHPAAVPITLGPRILRGETAAIAATSLWMGLCGDW 251


>gi|126730424|ref|ZP_01746235.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37]
 gi|126709157|gb|EBA08212.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37]
          Length = 247

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 138/237 (58%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL VD PL  +     S DQ HYL  V+R++ G  + LFNG+DGEW ++++  GK     
Sbjct: 13  RLCVDQPLAEEQAVALSRDQAHYLFGVMRLERGARVALFNGRDGEWAAEVADAGKRGGTL 72

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V   +  +Q    D+  +F+P+K  R D++++K+VEMG+  I PV T +T +    +D+ 
Sbjct: 73  VCRDRQAAQGTPPDLWLLFAPVKKARTDFIVEKAVEMGVRRILPVQTDFTNSERLRVDKQ 132

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     LE LL  WD   QI+F DET     ++  L  +   
Sbjct: 133 QAHAVEAAEQCGATFVPEVAEMARLERLLSEWDTTRQILFCDETAAGAPTI--LGGLEPG 190

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  A+LIGPEGG+   E+  L  +     +SLGPRILR++TAAVAA+AL QA  GDW
Sbjct: 191 P-WAVLIGPEGGFSDRERARLAEMDCARAVSLGPRILRAETAAVAALALWQAHLGDW 246


>gi|221640498|ref|YP_002526760.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           KD131]
 gi|221161279|gb|ACM02259.1| Hypothetical Protein RSKD131_2399 [Rhodobacter sphaeroides KD131]
          Length = 224

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 18/225 (8%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           +R+  G  + LFNG+DGEW ++++  GK         Q+       D+  +F+PIK  R 
Sbjct: 1   MRLARGAAVSLFNGRDGEWRAEVAETGKRGGTLLCTDQTAPLRLPPDLWLLFAPIKKART 60

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           D++++K+ EMG   I PV TR+T +     DR++ + + AAEQC    +P +    +LE 
Sbjct: 61  DFIVEKAAEMGAARILPVQTRFTNSERIRQDRLQAHAVEAAEQCGGTFVPEVADLASLER 120

Query: 155 LLKNWDHNCQIVFADET-CGSENSLEKLHAIAHI-----------PNV---AILIGPEGG 199
           LL +W    +I++ DE+  G+   L  L A               P+    AILIGPEGG
Sbjct: 121 LLADWPAERRIMWCDESLVGARAGL--LEAAGGFEARGFEEGPKRPSPGPWAILIGPEGG 178

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  EE+  L  +  V P+SLGPRILR+DTAAVAA+ L Q++ GDW
Sbjct: 179 FSEEEQARLRRMEQVVPVSLGPRILRADTAAVAALTLWQSVLGDW 223


>gi|228879506|ref|YP_457473.2| 16S ribosomal RNA methyltransferase RsmE [Erythrobacter litoralis
           HTCC2594]
          Length = 276

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 27/262 (10%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFV  P+   T     G+  HYL  V+R+  GD ++L +   GEW  K++ V K I   
Sbjct: 14  RLFVPEPIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRI-VT 72

Query: 69  VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +E   + + ++    +   P  +K +R D +++K+ E+G+ AIRPV+TR       N +R
Sbjct: 73  LEPVEKLREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---------ENS 177
            R     AAEQC    LP +  P  L+ LL++W  +  + FADE  G+           S
Sbjct: 133 ARAIVTEAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSES 192

Query: 178 LEKLHAIA----HIPN-----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222
           L +    A    H+ +            A+LIGPEGG+   E++ + + P    ++LGPR
Sbjct: 193 LRRQGPQAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPR 252

Query: 223 ILRSDTAAVAAMALVQAICGDW 244
           ILR +TAA+AA AL     GDW
Sbjct: 253 ILRGETAAIAATALWMGTVGDW 274


>gi|149186955|ref|ZP_01865263.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21]
 gi|148829344|gb|EDL47787.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21]
          Length = 239

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 4/229 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RLFV   L         G+Q +YLA V+R+ +GD ++L +   GEW+++++  GK  +  
Sbjct: 14  RLFVSDELGTGRIVCIEGNQANYLARVMRVGKGDAVILCDDVTGEWIARVTEAGKRRVEL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           KVE   R + +  D     + +K +R D +++KS E+G+ AI PVITR       N +R 
Sbjct: 74  KVEDHLRPREEVPDFWLCPALLKKDRFDVVLEKSTELGVAAIHPVITRRCVADKLNGERA 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
            T    AAEQC    LP +  P  L+ LL++W  +  + FADE  G   +    +A    
Sbjct: 134 STIVTEAAEQCARTALPQVAEPVKLDALLRDWPEDRILFFADEEGGEPAADAFCYADGP- 192

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              A+L GPEGG+   E+  + + P   P+SLGPRILR +TAA+A +A+
Sbjct: 193 --AALLTGPEGGFDDAERAAIRAHPAARPISLGPRILRGETAALAGIAV 239


>gi|84786494|gb|ABC62676.1| hypothetical protein ELI_02920 [Erythrobacter litoralis HTCC2594]
          Length = 260

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 27/256 (10%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
           P+   T     G+  HYL  V+R+  GD ++L +   GEW  K++ V K I   +E   +
Sbjct: 4   PIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRI-VTLEPVEK 62

Query: 75  SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI 132
            + ++    +   P  +K +R D +++K+ E+G+ AIRPV+TR       N +R R    
Sbjct: 63  LREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAERARAIVT 122

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---------ENSLEKLHA 183
            AAEQC    LP +  P  L+ LL++W  +  + FADE  G+           SL +   
Sbjct: 123 EAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSESLRRQGP 182

Query: 184 IA----HIPN-----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            A    H+ +            A+LIGPEGG+   E++ + + P    ++LGPRILR +T
Sbjct: 183 QAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPRILRGET 242

Query: 229 AAVAAMALVQAICGDW 244
           AA+AA AL     GDW
Sbjct: 243 AAIAATALWMGTVGDW 258


>gi|304321780|ref|YP_003855423.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis
           HTCC2503]
 gi|303300682|gb|ADM10281.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis
           HTCC2503]
          Length = 262

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 22/237 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G Q+HYL HVLR+ +   +LLF+G+ GEW + I+   K      VE Q+R  T  S +  
Sbjct: 28  GAQWHYLHHVLRLDQNAPVLLFDGRSGEWAAAITIASKKHGVLTVERQTRPMTPPSPLTL 87

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQCDILT 142
            F+P+K +  + +IQK  E+G+   RPV T  T      +  DR+ +  + AAEQC+ L 
Sbjct: 88  YFAPLKKDPTELIIQKGTELGITDFRPVRTDRTIVPKAGLKDDRLASIAVEAAEQCERLD 147

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----------------LEKLHAIAH 186
            P I+P  +L+ L+     +C +V+ DE     ++                L +  ++A 
Sbjct: 148 TPTIHPLISLQDLIAA-PPSC-LVYCDEAGDDPSARWGGPSGHGEGAAAALLTRQESLAG 205

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            P  A+LIGPEGG+   E++TL +LP    +SLGPR+LR++TAA+ A++L QA+ GD
Sbjct: 206 SPG-ALLIGPEGGFTPTERQTLRALPGTLAVSLGPRVLRAETAALVAISLWQAVLGD 261


>gi|241761515|ref|ZP_04759602.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753879|ref|YP_003226772.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373823|gb|EER63356.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553242|gb|ACV76188.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 256

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 139/239 (58%), Gaps = 4/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L RL+V+  L ++        Q HYL  V+R K G  ++LF+   GEWL ++   G K +
Sbjct: 12  LPRLYVEEKLSLEAVITPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           + K+ +    +    D+  + +PIK  R+D++ +K+ E+G+  I PVIT+ T     N++
Sbjct: 72  QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++ + + AAEQC   +L  +    +L+ LL  W  +  + FADET G E  +E L    
Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AIL+GPEGG+  +E++ ++++    P+SLGPRILR+DTAA+AA AL  A  GDW
Sbjct: 191 M--AAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDW 247


>gi|294084693|ref|YP_003551451.1| hypothetical protein SAR116_1124 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664266|gb|ADE39367.1| protein of unknown function DUF558 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 253

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 132/245 (53%), Gaps = 4/245 (1%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           H    RL+VD PL        + +Q HYL +V+R+  G  I LFNG+DGEW   I  + K
Sbjct: 8   HPAKARLYVDAPLQASGFVTVTKEQAHYLGNVMRLPLGTVIALFNGQDGEWHGVIDALDK 67

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              +  +  Q+R QT   D+  +F+P+K  RLD++ QK+ E+G   I PV T + Q +  
Sbjct: 68  QGGQIALTDQTRPQTNSPDLWLLFAPVKKARLDFIAQKASELGASRIWPVRTEFCQISRV 127

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET---CGSENSLE 179
             +R+    I AAEQ + L +  I     L   L   + +  +++ DE      + N   
Sbjct: 128 KDERLAANAIEAAEQTERLDVARIMKFEKLATALAEREDDRLLIWCDEASAGAANHNITT 187

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L AI      AILIGPEGG+   E++ L  +      SLGPRILR+DTAA+AA+A  QA
Sbjct: 188 ALAAIDPPKKAAILIGPEGGFSPAERKVLTQVDNCLTTSLGPRILRADTAAIAALACYQA 247

Query: 240 ICGDW 244
           ICGDW
Sbjct: 248 ICGDW 252


>gi|254454094|ref|ZP_05067531.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 238]
 gi|198268500|gb|EDY92770.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 238]
          Length = 209

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 122/216 (56%), Gaps = 14/216 (6%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           ++R+  G ++ LFNG+DGEW ++++   K +       Q++      D+  +F+PIK +R
Sbjct: 1   MMRLDVGADVSLFNGRDGEWHAQVAAASKKNGVLDCIVQTKPLQLPPDLWLVFAPIKKDR 60

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLPFIYPPTTL 152
             ++++K+ E+G   I PV T YTQ+ +    DR++ + + AAEQC    +P +      
Sbjct: 61  TSFIVEKAAELGAARIVPVQTEYTQSANRVRQDRLQAHALEAAEQCGGTYVPEVAEIQKF 120

Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETL 208
             +   WD   +I+F DET   + ++        IP      AILIGPEGG+  +E+E L
Sbjct: 121 AKMFNRWDPTRRILFCDETMVGQGAV--------IPTGEGPWAILIGPEGGFSDKERERL 172

Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + +     +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 173 NGMACAHAISLGPRILRADTAAVAAMTLWQQALGDW 208


>gi|56552450|ref|YP_163289.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544024|gb|AAV90178.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 256

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 139/239 (58%), Gaps = 4/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L RL+V+  L ++        Q HYL  V+R K G  ++LF+   GEWL ++   G K +
Sbjct: 12  LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           + K+ +    +    D+  + +PIK  R+D++ +K+ E+G+  I PVIT+ T     N++
Sbjct: 72  QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++ + + AAEQC   +L  +    +L+ LL  W  +  + FADET G E  +E L    
Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AIL+GPEGG+  +E++ ++++    P+SLGPRILR+DTAA+AA AL  A  GDW
Sbjct: 191 M--AAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDW 247


>gi|58617229|ref|YP_196428.1| hypothetical protein ERGA_CDS_05020 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416841|emb|CAI27954.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 123/209 (58%), Gaps = 5/209 (2%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           HY++ V+R  + D++ +FNGKDGEW+ +I  +  +I+ +++  +R Q K  ++   F  +
Sbjct: 30  HYISKVMRATKCDHVKIFNGKDGEWIGEICELSNNIKIRIDKLTRKQVKSKNLTLCFGIV 89

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           K   L  +I+++ EMG+  ++P+ T++   ++ N+D+ R + I A+EQC+ L +P I  P
Sbjct: 90  KGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCRKWAIEASEQCERLDIPQISHP 149

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            +   L K    N   +  DET   +   E L    +  N+ I++GPEGG+ SEE +  +
Sbjct: 150 ISFTDLKKLDTANINFIICDETGNGKKPAEIL---TNKNNIYIIVGPEGGFSSEELDFAY 206

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  F   LSLG RILR DTA V+A+A V 
Sbjct: 207 T--FCNGLSLGTRILRVDTAVVSALAYVN 233


>gi|6580788|gb|AAF18294.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 256

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 4/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L RL+V+  L ++        Q HYL  V+R K G  ++LF+   GEWL ++   G K +
Sbjct: 12  LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           + K+ +    +    D+  + +PIK  R+D++ +K+ E+G+  I PVIT+ T     N++
Sbjct: 72  QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++ + + AAEQC   +L  +    +L  LL  W  +  + FADET G E  +E L    
Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLISLLAEWPEDRALFFADET-GGEPMIEALSKRK 190

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AIL+GPEGG+  +E++ ++++    P+SLGPRILR+DTAA+AA AL  A  GDW
Sbjct: 191 M--AAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDW 247


>gi|57239217|ref|YP_180353.1| 16S ribosomal RNA methyltransferase RsmE [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161296|emb|CAH58217.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 238

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 122/209 (58%), Gaps = 5/209 (2%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           HY++ V+R  + D + +FNGKDGEW+ +I  +  +I+ +++  +R Q K  ++   F  +
Sbjct: 30  HYISKVMRATKCDYVKIFNGKDGEWIGEICELSNNIKIRIDKLTRKQVKSKNLTLCFGIV 89

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           K   L  +I+++ EMG+  ++P+ T++   ++ N+D+ R + I A+EQC+ L +P I  P
Sbjct: 90  KGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCRKWAIEASEQCERLDIPQISHP 149

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            +   L K    N   +  DET   +   E L    +  N+ I++GPEGG+ SEE +  +
Sbjct: 150 ISFTDLKKLDTANINFIICDETGNGKKPAEIL---TNKNNIYIIVGPEGGFSSEELDFAY 206

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  F   LSLG RILR DTA V+A+A V 
Sbjct: 207 T--FCNGLSLGTRILRVDTAVVSALAYVN 233


>gi|262276809|ref|ZP_06054602.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114]
 gi|262223912|gb|EEY74371.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114]
          Length = 234

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 6/229 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67
           RLF    L  K      GD YHYL++V+R + G +I LFN  +GE+L +I     K +  
Sbjct: 5   RLFFIESLEEKKTINIIGDDYHYLSNVMRCEVGSDIFLFNENNGEYLCRIIEKNKKKLIL 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  ++  +  Q+++  IF P K+++LD +IQK  E+G+ +  PVI+ +T+N   N++R+
Sbjct: 65  EVIQKAEYEKIQNNINLIFCPPKSHKLDTLIQKCTEIGVKSFIPVISDHTENRKLNLNRI 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R     + EQ + L +P I+ P + +  L    +  ++ FAD    S+ +L KL  I   
Sbjct: 125 RKIIKESVEQSNQLNIPHIFDPISFDQFLNQQKY--KVFFAD--IQSDINLSKL-KINLK 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            N +ILIGPEG + S+E +TL S       SLG RILRS+TAA+A++ L
Sbjct: 180 ENNSILIGPEGDFSSKELKTLRSNNNFISFSLGKRILRSETAAIASLVL 228


>gi|310815076|ref|YP_003963040.1| hypothetical protein EIO_0578 [Ketogulonicigenium vulgare Y25]
 gi|308753811|gb|ADO41740.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 244

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRF 67
           RLFVD PL        + DQ +YL +V+R++ G  + L NG+DGEW  S +S   +    
Sbjct: 6   RLFVDHPLGPGQTVPLNADQANYLFNVMRLQPGTVLSLINGRDGEWDASVVSAAKRHGTL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q++      D+   F+PIK  R D++I+K+ E+G   + P+++ +T +    +DR+
Sbjct: 66  LASRQTKPLQLPPDLWLAFAPIKKTRTDFIIEKATELGTARMIPILSDHTNSERVRVDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + I A EQC    LP +  P  L   L ++     + F DE    + S     A A  
Sbjct: 126 QAHVIEAVEQCGGTALPEVADPVALSAFLDHFPAGRTLWFCDEALVGQPS--GFPADATA 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               ILIGPEGG+ + E++ L +LPF   ++LGPRILR+DTAA+AA+ L QA  GDW
Sbjct: 184 GPACILIGPEGGFSARERDRLRTLPFARSIALGPRILRADTAALAALTLWQAGLGDW 240


>gi|58579175|ref|YP_197387.1| hypothetical protein ERWE_CDS_05110 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417801|emb|CAI27005.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 121/209 (57%), Gaps = 5/209 (2%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           HY++ V+R  + D + +FNGKDGEW+ +I  +   I+ +++  +R Q K  ++   F  +
Sbjct: 31  HYISKVMRATKCDYVKIFNGKDGEWIGEICELSNHIKIRIDKLTRKQVKSKNLTLCFGIV 90

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           K   L  +I+++ EMG+  ++P+ T++   ++ N+D+ R + I A+EQC+ L +P I  P
Sbjct: 91  KGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCRKWAIEASEQCERLDIPQISHP 150

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            +   L K    N   +  DET   +   E L    +  N+ I++GPEGG+ SEE +  +
Sbjct: 151 ISFTDLKKLDTANINFIICDETGNGKKPAEIL---TNKNNIYIIVGPEGGFSSEELDFAY 207

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  F   LSLG RILR DTA V+A+A V 
Sbjct: 208 T--FCNGLSLGTRILRVDTAVVSALAYVN 234


>gi|71082844|ref|YP_265563.1| hypothetical protein SAR11_0136 [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061957|gb|AAZ20960.1| conserved hypothetical protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLF    L +    K    Q HY+  V+R+K G+   LFN   GEW +KI  + KSI  F
Sbjct: 5   RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNN-SGEWEAKILTISKSIVEF 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R +    D+   FSPIK+N  ++MIQK+ E+G+    P+I   T     N +R+
Sbjct: 64  NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ + + +P I  P +L+  L +      ++F D    SEN     + +AH 
Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNH--EKMDLIFTD--LNSENKKLDFNKLAHN 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           P   ++IGPEG +  EE+  + +   V P+ +   ILRS+TA ++A+++V 
Sbjct: 180 P-TCVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVN 229


>gi|91762733|ref|ZP_01264698.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718535|gb|EAS85185.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 233

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLF    L +    K    Q HY+  V+R+K G+   LFN   GEW +KI  + KSI  F
Sbjct: 5   RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNN-SGEWEAKILTISKSIVEF 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R +    D+   FSPIK+N  ++MIQK+ E+G+    P+I   T     N +R+
Sbjct: 64  NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ + + +P I  P +L+  L +      ++F D    SEN     + +AH 
Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNH--EKMGLIFTD--LNSENKKLDFNKLAHN 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           P   ++IGPEG +  EE+  + +   V P+ +   ILRS+TA ++A+++V 
Sbjct: 180 P-TCVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVN 229


>gi|330813642|ref|YP_004357881.1| ribosomal RNA small subunit methyltransferase E [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486737|gb|AEA81142.1| ribosomal RNA small subunit methyltransferase E [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 238

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 3/230 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRF 67
           R+F+   L    + +   DQ HY+++V+R+K GD +LLFNG DGE+L K++    K    
Sbjct: 6   RIFLSERLEENNKIELGKDQSHYISNVMRLKSGDELLLFNGIDGEFLGKVAGSEKKQTII 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  + R Q+K S++   F P+K  RLD++IQK  E+G+ +  PVI+ +T   + N +R+
Sbjct: 66  QVHAKQRDQSKPSNISLAFCPLKGQRLDFLIQKCTEVGLKSFIPVISDHTIVRNVNENRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I ++EQ D L +P +     LE  L        ++F D      N L +L      
Sbjct: 126 KKIIIESSEQSDQLHIPQVLSALNLEEFLHFLKKEDVVLFGD-ISSKNNDLTQLIEDKS- 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            N  + IGPEG +  +E+E +         SLG  ILRS+TAA+A + L+
Sbjct: 184 KNYILFIGPEGDFSPKEREIILKNVKFKSFSLGKNILRSETAAIAGLVLL 233


>gi|73667112|ref|YP_303128.1| hypothetical protein Ecaj_0493 [Ehrlichia canis str. Jake]
 gi|72394253|gb|AAZ68530.1| Conserved hypothetical protein 46 [Ehrlichia canis str. Jake]
          Length = 239

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 121/211 (57%), Gaps = 9/211 (4%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           HY+ +V+R    D I LFNGKDGEW+ +I  V  + +  V  Q R Q     +   F+ +
Sbjct: 30  HYICNVMRAANLDEIKLFNGKDGEWIGEIFEVSHNTKIIVNEQIRKQVATKCLVLCFAIV 89

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           K   L  ++++S EMG+  ++P+ T++   ++ N+D+ + + I AAEQC+ L +P I  P
Sbjct: 90  KNTALQNVVRQSTEMGVTLMQPLYTKHIATSNINLDKCKKWAIEAAEQCERLDIPDILSP 149

Query: 150 TTLEFL--LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
            +   L  LK+ D+N   V  DET   ++  E L    +  N+ I+IGPEGG+ ++E   
Sbjct: 150 ISFVDLGKLKSSDNN--FVICDETGKGKHPSEVLK---NKDNIHIIIGPEGGFSNDELNF 204

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +S  F   LSLG RIL+ DTA V+A+A V 
Sbjct: 205 AYS--FCDGLSLGTRILKVDTAVVSALAYVN 233


>gi|329114600|ref|ZP_08243359.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter
           pomorum DM001]
 gi|326696080|gb|EGE47762.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter
           pomorum DM001]
          Length = 257

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 11/221 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85
           DQ  YL  VLR K GD++ +FN K GEWL++I+ + K   F  +E+Q RS T Q  +   
Sbjct: 34  DQARYLGTVLRKKTGDHVRIFNAKSGEWLARITEIRKDKGFFALEHQLRSPTPQPALVLA 93

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+ +K +  D  ++   E+G+    P+IT  T     N DR+      A EQC+   +P 
Sbjct: 94  FALLKRDATDLALRMGTELGVTHFVPLITERTNTHRINPDRLHAIATEATEQCERFDVPH 153

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV----AILIGPEGGYH 201
           I  P +    L +W    ++  A E    EN    +H  A +P+       L+GPEGG  
Sbjct: 154 IESPQSFTDFLASWPQEHRLFAAIER--GEN--RAIHTPALLPDAHAGDGFLVGPEGGLS 209

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
             E + +     +TP+SLGP +LR+DTA  A +AL+   CG
Sbjct: 210 DRECQMMLKYSCITPISLGPLVLRADTAVAAGLALIG--CG 248


>gi|254455755|ref|ZP_05069184.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207082757|gb|EDZ60183.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 232

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLF    L I  + K    Q HY++ V+R+KE +   LFN   GEW +KI  + K S+ F
Sbjct: 5   RLFFPKSLSINLKDKLDKSQSHYVSKVMRIKENEVFSLFNS-SGEWEAKIISISKSSVEF 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R +    ++   FSPIK+N  ++MIQK+ E+G+    P+I   T     N +R+
Sbjct: 64  NITKQLRQKENLKELWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ + +T+P I  P  L+  L N   +  ++F D    + N+   L  +   
Sbjct: 124 EKVIIEAAEQSNRITVPIIEEPQKLKNFLSN---DMDLIFTD--LNTSNTKIDLKKLTTK 178

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P   ++IGPEG +  EE+E +     V  + +   ILRS+TA ++A++++
Sbjct: 179 P-TCVIIGPEGDFSEEEREKILKFNGVQSIKINENILRSETAVISALSII 227


>gi|58002818|gb|AAW61712.1| Hypothetical protein GOX1976 [Gluconobacter oxydans 621H]
          Length = 254

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 9/217 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQTKQSDVQYIF 86
           Q HYL +V+R   G  + +FN +DGEW ++I+ + K     + ++  R+      V+ +F
Sbjct: 42  QAHYLGNVMRQGVGSAVRVFNERDGEWAAEIASLKKDKGSVLLHRCERTPAPTDGVELLF 101

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +P+K +  + +I+   E+G+   RPV+T  T     N++R+      AAEQC+ L +P I
Sbjct: 102 APLKRDATELVIRMGTELGVTRFRPVVTERTNTHRLNLERLSLIATEAAEQCERLDIPEI 161

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            PP +L  +L  W  +  +  A E    E+        A +   A+LIGPEGG+   E E
Sbjct: 162 LPPESLRVVLAGWPDDRPLFAALERRPGED--------AGVQAAALLIGPEGGFSEAEVE 213

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            L     V  LSLGP +LR++TA  A ++ + A   D
Sbjct: 214 LLRRHAAVHALSLGPLVLRAETAVCAGLSRLAARAED 250


>gi|229557995|ref|YP_192368.2| 16S ribosomal RNA methyltransferase RsmE [Gluconobacter oxydans
           621H]
          Length = 250

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 9/217 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQTKQSDVQYIF 86
           Q HYL +V+R   G  + +FN +DGEW ++I+ + K     + ++  R+      V+ +F
Sbjct: 38  QAHYLGNVMRQGVGSAVRVFNERDGEWAAEIASLKKDKGSVLLHRCERTPAPTDGVELLF 97

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +P+K +  + +I+   E+G+   RPV+T  T     N++R+      AAEQC+ L +P I
Sbjct: 98  APLKRDATELVIRMGTELGVTRFRPVVTERTNTHRLNLERLSLIATEAAEQCERLDIPEI 157

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            PP +L  +L  W  +  +  A E    E+        A +   A+LIGPEGG+   E E
Sbjct: 158 LPPESLRVVLAGWPDDRPLFAALERRPGED--------AGVQAAALLIGPEGGFSEAEVE 209

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            L     V  LSLGP +LR++TA  A ++ + A   D
Sbjct: 210 LLRRHAAVHALSLGPLVLRAETAVCAGLSRLAARAED 246


>gi|258542801|ref|YP_003188234.1| 16S ribosomal RNA methyltransferase RsmE [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633879|dbj|BAH99854.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636938|dbj|BAI02907.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639991|dbj|BAI05953.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256643047|dbj|BAI09002.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256646102|dbj|BAI12050.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256649155|dbj|BAI15096.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256652142|dbj|BAI18076.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655199|dbj|BAI21126.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 275

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 9/216 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85
           DQ  YL  VLR K GD++ +FN   GEWL++I+ + K   F ++E Q R+ T+Q  +   
Sbjct: 52  DQARYLGTVLRKKAGDHVRIFNANSGEWLARITEIRKDKGFFELERQLRAPTQQPTLVLA 111

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+ +K +  D +++   E+G+    P+IT  T     N DR+      A EQC+   +P 
Sbjct: 112 FALLKRDATDLVLRMGTELGVTHFMPLITERTNTHRINPDRLHAIATEATEQCERFDVPQ 171

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV----AILIGPEGGYH 201
           I  P +    L +W    ++ FA    G + +   +H  + +PN       L+GPEGG  
Sbjct: 172 IESPQSFTDFLASWPQEHRL-FAAVERGEDRA---IHTPSLLPNAHAGDGFLVGPEGGLS 227

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             E + +     +TP+SLGP +LR+DTA  A +AL+
Sbjct: 228 DRECQMMLKYSCITPISLGPLVLRADTAVAAGLALI 263


>gi|218661479|ref|ZP_03517409.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli IE4771]
          Length = 151

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           +DY++QK+VEMG G ++PV+T++ Q    N+D++R   + AAEQC +L +P +  P  L 
Sbjct: 1   MDYLVQKAVEMGAGLLQPVMTQHVQGKITNLDKLRANVVEAAEQCGVLGIPAVAEPVKLS 60

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
            LL  W    +I++ DE    +N L  L AI    ++A+L+GPEGG+  EE+  L SL F
Sbjct: 61  DLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-RHLALLVGPEGGFSEEERARLRSLDF 119

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           VT + LGPRILR+DTAAVAA+A+VQA  GDW
Sbjct: 120 VTAIPLGPRILRADTAAVAALAVVQATIGDW 150


>gi|326404264|ref|YP_004284346.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301]
 gi|325051126|dbj|BAJ81464.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301]
          Length = 226

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 116/212 (54%), Gaps = 5/212 (2%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S  Q HYL  V+R + GD +L+FN   GE+ + I  + + +    +  ++R+   + D  
Sbjct: 10  SAAQAHYLGAVMRRRAGDRLLVFNAGSGEFAATIGALDRRAATLVLGARTRAPEPEPDCW 69

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             F+P++ +  + +++K+ E+G+  + PV+T  TQ      DR+      AAEQ + LT+
Sbjct: 70  LCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARLRADRLAAIATEAAEQSERLTI 129

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I  P  L   L ++  + ++  A E     ++   L     +   A+L+GPEGG   E
Sbjct: 130 PDIAEPAPLAAFLASFPPSRRLFVAAE----RHAAPPLSPADPLQPHALLVGPEGGLAPE 185

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           E + +    FV+P++LGPRILR++TAA+A +A
Sbjct: 186 ELDAMARHAFVSPVTLGPRILRAETAAIAGLA 217


>gi|162149021|ref|YP_001603482.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787598|emb|CAP57194.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 250

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 7/236 (2%)

Query: 9   RLFVDFPLCIKTQGKASGD----QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           RLF D       +  A  D    Q HYL  VLR+  GD + LFN +DGEWL++I  + + 
Sbjct: 6   RLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRD 65

Query: 65  I-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             + ++  Q R+    +    +F+P+K +  D +++   E+G+    PV+T  T     N
Sbjct: 66  RGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVN 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+ T    AAEQC+ L +P I  P  L   L  W    ++  A E          +  
Sbjct: 126 EARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIED 185

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +A      +LIGPEGG+   E   L + PFV  +SLG  ILR+DTA    ++L+ A
Sbjct: 186 VAD--GDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239


>gi|209545229|ref|YP_002277458.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532906|gb|ACI52843.1| protein of unknown function DUF558 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 250

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 7/236 (2%)

Query: 9   RLFVDFPLCIKTQGKASGD----QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           RLF D       +  A  D    Q HYL  VLR+  GD + LFN +DGEWL++I  + + 
Sbjct: 6   RLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRD 65

Query: 65  I-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             + ++  Q R+    +    +F+P+K +  D +++   E+G+    PV+T  T     N
Sbjct: 66  RGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVN 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+ T    AAEQC+ L +P I  P  L   L  W    ++  A E          +  
Sbjct: 126 EARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIED 185

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +A      +L+GPEGG+   E   L + PFV  +SLG  ILR+DTA    ++L+ A
Sbjct: 186 VAD--GDGLLVGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239


>gi|114328853|ref|YP_746009.1| 16S ribosomal RNA methyltransferase RsmE [Granulibacter
           bethesdensis CGDNIH1]
 gi|114317027|gb|ABI63087.1| surface protein [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 7/213 (3%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIF 86
           + HYL  V+R   GD + LFN  DGEW + I  +  K     +  Q RS   +     +F
Sbjct: 35  RAHYLGTVMRRGVGDALSLFNATDGEWRAVIERIDRKGATLSLTEQIRSPVPEEGPWLVF 94

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K    + ++QK+ E+G+  + PV+T  T     N  R+    + AAEQC+ L++P +
Sbjct: 95  ALLKRTNTELVVQKATELGVSRLIPVMTTRTNAERINAARLEAIAVEAAEQCERLSIPVL 154

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
             P  L  LL++W  + ++  A E        +  HA       A+L GPEGG+  +E  
Sbjct: 155 QAPQPLPALLRDWPEDRRLYAAIERS------DVAHARGVAGPSALLTGPEGGFAEQELV 208

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L S   V P+SLG  +LR++TAA+A +AL+ A
Sbjct: 209 MLRSHAHVIPVSLGRTVLRAETAAIAGLALLTA 241


>gi|190571358|ref|YP_001975716.1| hypothetical protein WPa_0963 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018754|ref|ZP_03334562.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357630|emb|CAQ55071.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995705|gb|EEB56345.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 231

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 13/238 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           RL+V+  L           Q HY+ +V+R+K+ DNI LFNGKDGEWL ++  +  KS + 
Sbjct: 5   RLYVEEALSQNVSLALHPRQSHYIYNVMRLKKHDNIYLFNGKDGEWLGEVVNISSKSTKI 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            ++ +++ Q  + ++    + +K+  L  +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  IIKERTKQQQHEKNLYLYCALVKSGALSNIVRQATEMGVTCIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ    ++P I+ P  + F   +   N   V  DET G      K+  +   
Sbjct: 125 KLQAIEAAEQSGRTSIPQIFLP--INFCELSDSQNKNFVLCDET-GEGQPPNKV--LKGK 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            NVAI++GPEGG+ S E ++ +   F   LSLG RILR DTA VAA+        +WY
Sbjct: 180 KNVAIIVGPEGGFSSCELDSAN--KFCQKLSLGKRILRVDTAVVAALTFT-----NWY 230


>gi|157825352|ref|YP_001493072.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia akari str.
           Hartford]
 gi|157799310|gb|ABV74564.1| hypothetical protein A1C_01170 [Rickettsia akari str. Hartford]
          Length = 254

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 132/231 (57%), Gaps = 4/231 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D + +FNG +GE+L+ I+ +GK +I  
Sbjct: 5   RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRIFNGTEGEFLAHITAIGKHNISV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +++ Q +    +S +    + IK ++L   I  + ++G+  I P+IT   Q    N++R+
Sbjct: 65  RLKEQLKKPYTESALTLAVAIIKQDKLMLAINMATQLGITKIIPLITSRCQFRTVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + L  P I    T++  LK   HN  +++A+E    ENS+ ++ ++   
Sbjct: 125 TKCVIEATEQSERLIPPIIEKAITIQDCLK--KHNNFMLYANEHEKEENSILRISSLLD- 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            N+AI+IGPEGG+ ++E E L S      +SLG  ILR++TA + A+  V+
Sbjct: 182 NNIAIIIGPEGGFTNDELELLASYKNTKSVSLGSNILRAETAVITAIVQVK 232


>gi|88607769|ref|YP_505371.1| hypothetical protein APH_0794 [Anaplasma phagocytophilum HZ]
 gi|88598832|gb|ABD44302.1| conserved hypothetical protein TIGR00046 [Anaplasma phagocytophilum
           HZ]
          Length = 239

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 119/213 (55%), Gaps = 9/213 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
            DQ HY+  V+R++  D ++LF+G  G+W + IS +  K +  +VE+      K  D+  
Sbjct: 29  SDQAHYIRDVMRVRISDAVVLFDGVTGDWFATISEISRKKVEVRVEHLVSEYVKSRDLML 88

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
             + +K + +  +++++ EMG+  I+P+ T Y+  +  N+ + R + I AAEQC+   +P
Sbjct: 89  CIALVKQDTMRSVVRQATEMGVTQIQPIRTEYSVVSDINVQKCRQWAIEAAEQCERQDIP 148

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            I   + +EF   N D   ++V  DET       E L +     N+ I+IGPEGG+   E
Sbjct: 149 EI--ASVMEFTHLN-DLGKKLVLCDETGKGRMPAEVLRS---KENLGIIIGPEGGFS--E 200

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +E + +  F   +SLG RILR DTA VAA+A V
Sbjct: 201 RELVCAESFCEKMSLGHRILRVDTAVVAALAYV 233


>gi|68171492|ref|ZP_00544876.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658073|ref|YP_507353.1| hypothetical protein ECH_0540 [Ehrlichia chaffeensis str. Arkansas]
 gi|67999098|gb|EAM85765.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599530|gb|ABD44999.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 241

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 13/234 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD  L   +         HY+ HV+R  + D + LFNG+DGEW+ +I  +  + + +
Sbjct: 11  RLYVDCTLSKSSIVILDNIASHYICHVMRAAKLDEVKLFNGRDGEWIGEIFELSSNTKIR 70

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V    R Q     +    S +K   L  +I+++ EMG+  I+P+ T++   ++ N+ + +
Sbjct: 71  VNELIRRQYVPKSLTLCLSIVKNTALQNVIRQATEMGVTFIQPIYTQHIATSNINLSKCK 130

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFL----LKNWDHNCQIVFADETCGSENSLEKLHAI 184
            + I AAEQC  L +P I  P  ++F+    LK  D+N   V  DET       E L   
Sbjct: 131 KWAIEAAEQCGRLDIPDISFP--IDFIDLKQLKTDDNN--FVICDETGKGHPPSEVLKGK 186

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               NV I+IGPEGG+ ++E    +S  F   LSLG  ILR DTA V+A+A V+
Sbjct: 187 N---NVHIIIGPEGGFSNDELSFAYS--FCDGLSLGTTILRVDTAVVSALAYVK 235


>gi|229594326|ref|YP_001499059.2| 16S ribosomal RNA methyltransferase RsmE [Rickettsia massiliae
           MTU5]
          Length = 243

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 134/231 (58%), Gaps = 3/231 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ +  
Sbjct: 5   RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR  Q    N++R+
Sbjct: 65  RLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQFRSVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + LT P I    T++  LK   +N  +++A+E    +NS+ ++ +    
Sbjct: 125 TKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSILRISSSLSN 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            ++ I++GPEGG+ ++E E L S      +SLG  ILR++TAA+ A+  V+
Sbjct: 183 SDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITAIVQVR 233


>gi|120555960|ref|YP_960311.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei
           VT8]
 gi|120325809|gb|ABM20124.1| 16S rRNA m(3)U-1498 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 244

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 137/249 (55%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F D PL +  Q +   +  +++  VLRM+ G  +LLFNG   ++ + I+  GK  
Sbjct: 2   RIPRIFTDSPLAVGGQCQLDDNAANHVGRVLRMQAGQALLLFNGDGQDYHATITEAGKKH 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           ++  V   + ++T +S ++ + +    K +R+DY +QK+VEMG+  I P+ T    +   
Sbjct: 62  VQVAVTEAAENET-ESSLRVVLAQTLSKGDRMDYAVQKAVEMGVSEIVPLTTERC-DVKL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGS 174
             DR        +   ISAAEQC    +P I P  T++  L++    + ++V    T  S
Sbjct: 120 KGDREDKRLRHWQQVAISAAEQCGRARVPEIQPVMTVQQWLEHARACDLRLVLHHRTERS 179

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+LEK  +I      A++IGPEGG  +EE        F+ P++LGPR+LR++TA VAA+
Sbjct: 180 LNTLEKPSSI------ALMIGPEGGLTAEEIALAEDNGFL-PVALGPRVLRTETAPVAAI 232

Query: 235 ALVQAICGD 243
           AL Q + GD
Sbjct: 233 ALCQWLWGD 241


>gi|157844011|gb|ABV84512.1| hypothetical protein RMA_0218 [Rickettsia massiliae MTU5]
          Length = 283

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 134/231 (58%), Gaps = 3/231 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ +  
Sbjct: 45  RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSV 104

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR  Q    N++R+
Sbjct: 105 RLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQFRSVNIERL 164

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + LT P I    T++  LK   +N  +++A+E    +NS+ ++ +    
Sbjct: 165 TKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSILRISSSLSN 222

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            ++ I++GPEGG+ ++E E L S      +SLG  ILR++TAA+ A+  V+
Sbjct: 223 SDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITAIVQVR 273


>gi|42521009|ref|NP_966924.1| hypothetical protein WD1212 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225630878|ref|YP_002727669.1| putative methyltransferase [Wolbachia sp. wRi]
 gi|225677207|ref|ZP_03788200.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|42410750|gb|AAS14858.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225590731|gb|EEH11965.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225592859|gb|ACN95878.1| putative methyltransferase [Wolbachia sp. wRi]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 69  VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
              +   Q +  +  Y++   +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ   +++P I PP     L  +   N   V  DET  ++  L+        
Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVLKGKK----- 177

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            NVAI++GPEGG+ S E +      F   LSLG RILR DTA VAA+  
Sbjct: 178 -NVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVVAALTF 223


>gi|218516761|ref|ZP_03513601.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli 8C-3]
          Length = 133

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 87/133 (65%), Gaps = 1/133 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ +Q++YLA+VLRM+    ILLFNG+DGEW + +S+
Sbjct: 1   MRANFRMQRLFVDAPLSAGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEQMRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTI 132
              N+D++R   +
Sbjct: 121 KITNLDKLRANVV 133


>gi|49082184|gb|AAT50492.1| PA0419 [synthetic construct]
          Length = 241

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 31/253 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R FVD PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFVDQPLSL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R ++  Q   Q       ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   +LP I+PP  LE  L+  D + ++V            
Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLV------------ 169

Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             LH +A     H P   +A L+GPEGG    E E   +  F +   LGPR+LR++TA V
Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHS-ARLGPRVLRTETAPV 226

Query: 232 AAMALVQAICGDW 244
            A+A+ Q + GD+
Sbjct: 227 VALAVAQQLWGDF 239


>gi|15595616|ref|NP_249110.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PAO1]
 gi|218889161|ref|YP_002438025.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           LESB58]
 gi|254237347|ref|ZP_04930670.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254243517|ref|ZP_04936839.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9946275|gb|AAG03808.1|AE004479_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126169278|gb|EAZ54789.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196895|gb|EAZ60958.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769384|emb|CAW25144.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 240

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 31/253 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R FVD PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFVDQPLSL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R ++  Q   Q       ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   +LP I+PP  LE  L+  D + ++V            
Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLV------------ 169

Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             LH +A     H P   +A L+GPEGG    E E   +  F +   LGPR+LR++TA V
Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHS-ARLGPRVLRTETAPV 226

Query: 232 AAMALVQAICGDW 244
            A+A+ Q + GD+
Sbjct: 227 VALAVAQQLWGDF 239


>gi|296386918|ref|ZP_06876417.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PAb1]
 gi|313111958|ref|ZP_07797747.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa
           39016]
 gi|310884249|gb|EFQ42843.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa
           39016]
          Length = 240

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 124/253 (49%), Gaps = 31/253 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R FVD PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFVDQPLAL-GQHDLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R ++  Q   Q       ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   +LP I+PP  LE  L+  D + ++V            
Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLV------------ 169

Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             LH +A     H P   +A L+GPEGG    E E   +  F     LGPR+LR++TA V
Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHA-ARLGPRVLRTETAPV 226

Query: 232 AAMALVQAICGDW 244
            A+A+ Q + GD+
Sbjct: 227 VALAVAQQLWGDF 239


>gi|58698200|ref|ZP_00373121.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535281|gb|EAL59359.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 228

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 69  VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
              +   Q +  +  Y++   +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ   +++P I PP     L  +   N   V  DET  ++  L+        
Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVLKGKK----- 177

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            NVAI++GPEGG+ S E +      F   LSLG RILR DTA +AA+  
Sbjct: 178 -NVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVLAALTF 223


>gi|116054150|ref|YP_788593.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589371|gb|ABJ15386.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 240

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 31/253 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R FVD PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFVDQPLAL-GQHDLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R ++  Q   Q       ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   +LP I+PP  LE  L+  D   ++V            
Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDELRLV------------ 169

Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             LH +A     H+P   +A L+GP+GG    E E   +  F     LGPR+LR++TA V
Sbjct: 170 --LHPVAAPLASHVPPSRLAFLVGPKGGLSDAEVEQAKAAGFHA-ARLGPRVLRTETAPV 226

Query: 232 AAMALVQAICGDW 244
            A+A+ Q + GD+
Sbjct: 227 VALAVAQQLWGDF 239


>gi|148260870|ref|YP_001234997.1| hypothetical protein Acry_1876 [Acidiphilium cryptum JF-5]
 gi|146402551|gb|ABQ31078.1| protein of unknown function DUF558 [Acidiphilium cryptum JF-5]
          Length = 238

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           + L RL +  PL        S  Q HYL  V+R + GD +L+FN   GE+ + I  + + 
Sbjct: 2   ASLIRLHLPSPLSPGATLATSAAQAHYLGAVMRRRAGDPLLVFNAGSGEFAATIGALDRR 61

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
           +    +  ++R+   + D    F+P++ +  + +++K+ E+G+  + PV+T  TQ     
Sbjct: 62  AATLVLGARTRAPEPEPDCWLCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARLR 121

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            DR+      AAEQ + LT+P I  P  L   L  +  + ++  A E     ++   L  
Sbjct: 122 ADRLAAIATEAAEQSERLTIPDIAEPAPLAAFLAAFPPSRRLFVAAE----RHAAPPLSP 177

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              +   A+L+GPEGG   EE + +    FV+P++LGPRILR++TAA+A +A
Sbjct: 178 ADPLQPHALLVGPEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLA 229


>gi|149375982|ref|ZP_01893748.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893]
 gi|149359619|gb|EDM48077.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893]
          Length = 244

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ D PL          +   ++  VLRM+ G  +LLFNG   ++ + I+  GK  
Sbjct: 2   RIPRIYTDSPLSEGATAGLDDNAAQHVGRVLRMQPGQELLLFNGDGNDYPATITEAGKKH 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +  +V   S + T +S ++ +      K +R+DY +QK+VEMG+  I P+ T    +   
Sbjct: 62  VSVEVGTPSANAT-ESHLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERC-DVKL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGS 174
             DR        ++  ISAAEQC    +P I P  TL E+   + D + ++V    T  S
Sbjct: 120 KGDREDKRLRHWQSVAISAAEQCGRARVPEIVPVMTLSEWFENSGDCDLRLVLHHRTEQS 179

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L K         VA++IGPEGG   +E     +  F+ P++LGPR+LR++TA VAAM
Sbjct: 180 LNTLAKPT------RVALMIGPEGGLSPDEITAAANAGFL-PVALGPRVLRTETAPVAAM 232

Query: 235 ALVQAICGD 243
           AL Q + GD
Sbjct: 233 ALCQWLWGD 241


>gi|152984501|ref|YP_001345914.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PA7]
 gi|150959659|gb|ABR81684.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 240

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R FVD PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFVDQPLAL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELIEVGKKNV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R ++  Q   Q       ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   +LP I+PP  LE  L+  D   ++V            
Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPRIHPPLALEDWLRQRDDELRLVLHPVAA------ 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L + A   ++A L+GPEGG    E E   +  F +   LGPR+LR++TA V A+A+ Q
Sbjct: 176 -PLASHARPASLAFLVGPEGGLGDAEVEQAQAAGFHS-ARLGPRVLRTETAPVVALAVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|104783966|ref|YP_610464.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila
           L48]
 gi|95112953|emb|CAK17681.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 239

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R F+D PL +    +    Q HY+  VLRM  GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFIDAPLGLGEH-ELPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R  ++     Q + S   ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVSLDQALPGQAESSLHVHLGQGLSRGERMDWAIQKATELGVNEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   ++P I+PP TL   +K  D + ++V            
Sbjct: 122 RADKRLAHWRQVAISACEQCGRSSVPVIHPPVTLAEWIKGSDADLKLVLHPVAA------ 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L + A    +A LIGPEGG +  E E   +  F     LGPR+LR++TA V A+++ Q
Sbjct: 176 -PLTSHAKPARLAFLIGPEGGLNDAEVEQAKAAGFHA-ARLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|107099405|ref|ZP_01363323.1| hypothetical protein PaerPA_01000417 [Pseudomonas aeruginosa PACS2]
          Length = 240

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 124/253 (49%), Gaps = 31/253 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R FVD PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFVDQPLSL-GQHDLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R ++  Q   Q       ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   +LP I+PP  LE  L+    + ++V            
Sbjct: 122 RADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRGDDLRLV------------ 169

Query: 179 EKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             LH +A     H P   +A L+GPEGG    E E   +  F +   LGPR+LR++TA V
Sbjct: 170 --LHPVAAPLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHS-ARLGPRVLRTETAPV 226

Query: 232 AAMALVQAICGDW 244
            A+A+ Q + GD+
Sbjct: 227 VALAVAQQLWGDF 239


>gi|269958740|ref|YP_003328527.1| putative methyltransferase [Anaplasma centrale str. Israel]
 gi|269848569|gb|ACZ49213.1| putative methyltransferase [Anaplasma centrale str. Israel]
          Length = 243

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 18  IKTQGKAS--GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74
           I+T  + +    Q  Y+  V+R +  D +LLF+G  GEWL +IS + K ++  + E  SR
Sbjct: 19  IRTGARVTLNSSQARYVRDVMRARHDDAVLLFDGIRGEWLCRISCISKKTVEVEAETLSR 78

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +   +   F+ +K++ +  +++++ EMG+   +P+ T Y+     +  +   + + A
Sbjct: 79  KHVRTRTLVLCFALVKSDTVRNVVRQATEMGVTLFQPIRTEYSSVHDVDSKKCHLWAVEA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +EQC    +P + P      L +  +   Q V  DET G     E LH      +V +++
Sbjct: 139 SEQCGRQDVPEVAPVVDFRTLCEFHNPERQFVLCDETGGGRPPYEVLHGGR---DVWVVV 195

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEGG+  EE     S  F   +SLGPRILR DTA V A+A V 
Sbjct: 196 GPEGGFSDEELRL--SENFCDKMSLGPRILRVDTAVVCALAHVN 237


>gi|157828086|ref|YP_001494328.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|157800567|gb|ABV75820.1| hypothetical protein A1G_01190 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 244

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 127/219 (57%), Gaps = 4/219 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ + 
Sbjct: 5   RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 65  VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ ++  
Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSLLS 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|319717302|ref|YP_001649575.3| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii
           str. Iowa]
 gi|165907873|gb|ABY72169.1| hypothetical protein RrIowa_0258 [Rickettsia rickettsii str. Iowa]
          Length = 257

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 127/219 (57%), Gaps = 4/219 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ + 
Sbjct: 18  RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 77

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 78  VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 137

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ ++  
Sbjct: 138 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSLLS 195

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 196 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234


>gi|292571762|gb|ADE29677.1| hypothetical protein rpr22_CDS160 [Rickettsia prowazekii Rp22]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 136/237 (57%), Gaps = 16/237 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D++ +FNG DGE+L++I+ +GK ++  
Sbjct: 5   RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQIGKNNLSV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            ++ Q +    +S +    + IK+++L   I  + ++G+  I P+ITR  Q    N++R+
Sbjct: 65  VLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQFRTVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186
               I A EQ + L  P I    TL+  LK   +N  I++A+E        EK+ H+I H
Sbjct: 125 MKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEH-------EKVKHSILH 175

Query: 187 IP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           I      ++AI+IGPEGG+ ++E E L        +SLG  ILR++TAA++ ++ V+
Sbjct: 176 ISSLLSKDIAIIIGPEGGFTNDELELLALYNNTQSISLGSNILRTETAAISLISQVR 232


>gi|330994720|ref|ZP_08318643.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
 gi|329758361|gb|EGG74882.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
          Length = 246

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY--I 85
           Q HYL  VLR + G  + +FN +DG+W   I ++ +  R ++    R++  ++ V    +
Sbjct: 29  QAHYLGAVLRQQAGGEVAVFNARDGQWQGVIDHLRRE-RCQIRLVERTRAPEATVGLGLL 87

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           F+P+K +  + +I+   E+G+    PV+T  T     N  R+ +    AAEQC+ L +P 
Sbjct: 88  FAPLKRDATETVIRMGTELGVTRFCPVVTERTNTHRLNAARLESIAREAAEQCERLDVPG 147

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           I P   L  LL  W     +  A      E S  +  A        +LIGPEGG+ + E+
Sbjct: 148 IDPLVPLVNLLAQWPEGISLFAA-----LERSAPRPMAAPAQAGDCVLIGPEGGFSAREQ 202

Query: 206 ETLHSLPFVTPLSLGPRILRSDT 228
           + L +  FV P+SLG  +LR+DT
Sbjct: 203 DMLRARAFVRPVSLGSLVLRADT 225


>gi|229220790|ref|YP_153918.2| hypothetical protein AM686 [Anaplasma marginale str. St. Maries]
          Length = 243

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86
           Q HY+  V+R K GD +LLF+G  GEWL ++S + K ++  + E   R   +   +   F
Sbjct: 31  QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 90

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K   +  +++++ EMG+   +P+ T Y+     +  + R + + A+EQC    +P +
Sbjct: 91  ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 150

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P      L +  + + Q V  DET G +   E L    +   V +++GPEGG+ +EE  
Sbjct: 151 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 207

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +     F   +SLG RIL+ DTA V A+A V
Sbjct: 208 SCED--FCDKMSLGSRILKVDTAVVCALAYV 236


>gi|222475209|ref|YP_002563625.1| hypothetical protein AMF_516 [Anaplasma marginale str. Florida]
 gi|56388076|gb|AAV86663.1| hypothetical protein AM686 [Anaplasma marginale str. St. Maries]
 gi|222419346|gb|ACM49369.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86
           Q HY+  V+R K GD +LLF+G  GEWL ++S + K ++  + E   R   +   +   F
Sbjct: 48  QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 107

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K   +  +++++ EMG+   +P+ T Y+     +  + R + + A+EQC    +P +
Sbjct: 108 ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 167

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P      L +  + + Q V  DET G +   E L    +   V +++GPEGG+ +EE  
Sbjct: 168 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 224

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +     F   +SLG RIL+ DTA V A+A V
Sbjct: 225 SCED--FCDKMSLGSRILKVDTAVVCALAYV 253


>gi|255003188|ref|ZP_05278152.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str.
           Puerto Rico]
          Length = 244

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86
           Q HY+  V+R K GD +LLF+G  GEWL +IS + K ++  + E   R   +   +   F
Sbjct: 32  QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRISCISKKTVEVEAEKLLRKHVRTRTLVLCF 91

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K   +  +++++ EMG+   +P+ T Y+     +  + R + + A+EQC    +P +
Sbjct: 92  ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSVHDIDSRKCRLWAVEASEQCGRQDVPEV 151

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P      L +  + + Q V  DET G +   E L    +   V +++GPEGG+ +EE  
Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 208

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +     F   +SLG RIL+ DTA V A+A V
Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYV 237


>gi|254995038|ref|ZP_05277228.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str.
           Mississippi]
          Length = 244

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86
           Q HY+  V+R K GD +LLF+G  GEWL ++S + K ++  + E   R   +   +   F
Sbjct: 32  QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 91

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K   +  +++++ EMG+   +P+ T Y+     +  + R + + A+EQC    +P +
Sbjct: 92  ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 151

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P      L +  + + Q V  DET G +   E L    +   V +++GPEGG+ +EE  
Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 208

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +     F   +SLG RIL+ DTA V A+A V
Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYV 237


>gi|255004318|ref|ZP_05279119.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str.
           Virginia]
          Length = 244

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIF 86
           Q HY+  V+R K GD +LLF+G  GEWL ++S + K ++  + E   R   +   +   F
Sbjct: 32  QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 91

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K   +  +++++ EMG+   +P+ T Y+     +  + R + + A+EQC    +P +
Sbjct: 92  ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 151

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P      L +  + + Q V  DET G +   E L    +   V +++GPEGG+ +EE  
Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQ---NDREVWVIVGPEGGFSNEELC 208

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +     F   +SLG RIL+ DTA V A+A V
Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYV 237


>gi|167036024|ref|YP_001671255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1]
 gi|166862512|gb|ABZ00920.1| protein of unknown function DUF558 [Pseudomonas putida GB-1]
          Length = 239

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 33/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+L ++  VG K++
Sbjct: 3   LSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKTV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY 116
           R  ++   ++ T Q+D     SP+         +  R+D+ IQK+ E+G   I P+++  
Sbjct: 62  RVSLD---QALTGQAD-----SPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSER 113

Query: 117 T------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE 170
                  +     +   R   ISA EQC   TLP I+PP  L   L +   + ++V    
Sbjct: 114 CEVRLKDERADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLTEWLSSTQADLKLVL--- 170

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                   E L + A    +A LIGPEGG    E E   +  F     LGPR+LR++TA 
Sbjct: 171 ----HPVAEPLTSHAKPAGLAFLIGPEGGLSEAEVEQAKAAGFHA-ARLGPRVLRTETAP 225

Query: 231 VAAMALVQAICGDW 244
           V A+++ Q + GD+
Sbjct: 226 VVALSVAQQLWGDF 239


>gi|90020116|ref|YP_525943.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
 gi|89949716|gb|ABD79731.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+++D P+         G   HYL  VLRM+ G  ++LFNGK GE+ + I   GK  
Sbjct: 2   RIPRIYIDKPITANANLDLDGPTAHYLLKVLRMESGRELILFNGKGGEYSAVIESAGKKN 61

Query: 66  RF-KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            F KV ++ +R        +      + +R+D+++QK+ E+G+  I P+    +      
Sbjct: 62  VFCKVGKHNTRESESSLQTELAIGISRGDRMDWVLQKATELGVSRIIPLFADRSEVKLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M   +   ISA EQC   TLP + P   L+  L +     + V    T      
Sbjct: 122 ERLEKKMQHWQQILISACEQCTRNTLPTLLPACPLDEYLASTQAEQKFVLHHRTH----- 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +KL  I    + A+LIGPEGG    E +      F   L+LGPRILR++TA +AA++++
Sbjct: 177 -KKLRDITKPKSAALLIGPEGGLTDNEIQNAERKGF-NALALGPRILRTETAPIAALSIL 234

Query: 238 QAICGD 243
           Q + GD
Sbjct: 235 QFVWGD 240


>gi|51473368|ref|YP_067125.1| hypothetical protein RT0159 [Rickettsia typhi str. Wilmington]
 gi|51459680|gb|AAU03643.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 4/231 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R++++  L   ++ +   D  HY+  VLR+K  D++ +FNG DGE+L+ I+ +GK+ I  
Sbjct: 5   RIYINSHLAENSKIELVRDNVHYVKTVLRLKINDSLRIFNGSDGEFLAHITKIGKNNISV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q +    +  +    + IK+++L  +I  + ++G+  I P+IT   Q    N++R+
Sbjct: 65  VLTEQLKKAYIEPALTLAVAIIKSDKLMLIINMATQLGITKIIPLITSRCQFKTVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + L  P I    TL+  LK   +N  I++A+E    +NS+ ++ ++   
Sbjct: 125 IKCVIEATEQSERLNPPIIEHAITLKDYLK--KNNNLILYANEHEKVKNSILRISSLLA- 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            ++AI+IGPEGG+ ++E E L        +SLG  ILR++TAA+  +A V+
Sbjct: 182 NDIAIIIGPEGGFTNDELELLALYKNTQSISLGSNILRTETAAITVIAQVR 232


>gi|325273070|ref|ZP_08139378.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
 gi|324101804|gb|EGB99342.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
          Length = 239

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+   +  VG K++
Sbjct: 3   LSRFFIDAPLSLGEHDLPEA-QAHYVGRVLRMAPGDAVQLFDGSGQEYRGHLLEVGKKTV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R  ++     Q       ++   + +  R+D+ IQK+ E+G  AI P+I+         +
Sbjct: 62  RVSLDQAFAGQADSPLHIHLGQGLSRGERMDWAIQKATELGANAITPIISERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   TLP I PPTTL   L +     ++V            
Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPAINPPTTLAEWLSSTHAELKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + A    +A LIGPEGG    E E      F     LGPR+LR++TA V A+++ Q
Sbjct: 175 EPLTSHARPATLAFLIGPEGGLGDAEVEQAQRAGFQA-ARLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|312963582|ref|ZP_07778063.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6]
 gi|311282091|gb|EFQ60691.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6]
          Length = 239

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F D PL +    +    Q HY++ VLRM EGD + LF+G   E+L  +  VGK  R
Sbjct: 3   LSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKK-R 60

Query: 67  FKVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+       +     +I       +  R+D+ IQK+ E+G+ AI P+ +         
Sbjct: 61  VTVQLTQHFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   T+P I+PP  L   LK  + + ++V           
Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E + + A   ++A LIGPEGG    E ET     +     LGPR+LR++TA V A+A+ 
Sbjct: 174 AEPMVSHAKPSSLAFLIGPEGGLTDNEVETAQGAGYHAA-RLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|70733090|ref|YP_262863.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           Pf-5]
 gi|68347389|gb|AAY94995.1| conserved hypothetical protein TIGR00046 [Pseudomonas fluorescens
           Pf-5]
          Length = 239

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F+D PL +    +    Q HY+  VLRM EG  + +F+G   E+   +  VGK  R
Sbjct: 3   LSRFFIDAPLSLGEH-ELPEAQAHYIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKK-R 60

Query: 67  FKVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            +V+       +Q     I       +  R+D+ IQK+ E+G+  I P+ +   +     
Sbjct: 61  VRVQLNESFAGQQESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKD 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +   R   ISA EQC    +P I+PP  L   +K    + ++V           
Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSQVPVIHPPVLLADWIKQARADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L + A   ++A LIGPEGG    E E  HS  F+ P  LGPR+LR++TA V A+A+ 
Sbjct: 174 AQPLESHAKPASLAFLIGPEGGLTDAEVELSHSAGFL-PARLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|126665848|ref|ZP_01736829.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17]
 gi|126629782|gb|EBA00399.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17]
          Length = 244

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 22/251 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++ D PL      +   +   ++  VLRM+ G  + LFNG   ++ + I+   K +
Sbjct: 2   RIPRIYTDTPLQAGADAQLDDNAAQHVGRVLRMQPGQALSLFNGDGQDYRALIASASKKN 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +  +VE Q  + + +S ++ +      K +R+DY +QK+ EMG+  I P+ T    +   
Sbjct: 62  VTVQVE-QPTANSSESALEIVLGQTLSKGDRMDYAVQKATEMGVTRIVPLSTERC-DVRL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGS 174
             DR        R+  ISAAEQC    +P I P   + E+L  +   + ++V    T  S
Sbjct: 120 KGDREDKRLSHWRSVAISAAEQCGRARVPDILPVMNITEWLEYSQRCDVRLVLHHRTEQS 179

Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +SL K       PN VA++IGPEGG  ++E        F+ P++LGPR+LR++TA VAA
Sbjct: 180 LDSLAK-------PNSVALMIGPEGGLSADEIAQAEKSGFL-PIALGPRVLRTETAPVAA 231

Query: 234 MALVQAICGDW 244
           MAL Q + GD+
Sbjct: 232 MALCQWLWGDF 242


>gi|67459503|ref|YP_247127.1| hypothetical protein RF_1111 [Rickettsia felis URRWXCal2]
 gi|67005036|gb|AAY61962.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
          Length = 240

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 121/218 (55%), Gaps = 3/218 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D + +FNG DGE+L++I+Y+GK  +  
Sbjct: 5   RIYINSHLAENSKIELANDHVHYVKTVLRLKVNDGLRIFNGTDGEFLAQITYIGKHKLSV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR  Q    N++R+
Sbjct: 65  RLKEQLKKPYTESALTLAAAIIKQDKLMLAINMATQLGITKIIPLITRRCQFRTINIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ +    
Sbjct: 125 TKCVIEATEQSERLTPPIIEKAITIQDYLK--QNNNLMLYANEHEKEENSILRILSSLSN 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            ++ I+IGPEGG   +E   L S      +SLG  ILR
Sbjct: 183 SDITIIIGPEGGLTDDELGLLASYKNTKSVSLGNNILR 220


>gi|237747297|ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378648|gb|EEO28739.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 243

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 136/248 (54%), Gaps = 25/248 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RLF DFPL +        D   ++  V+R+  G+ I LFNG+ GE+ ++I   G++ R
Sbjct: 1   MTRLFCDFPLAVGACLDLPKDTARHI-MVVRLSRGEAITLFNGQGGEYRARILETGRN-R 58

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
            + E  S S   + ++ Y  S ++      ++D++I+K+ E+G+  I P+ T+ +     
Sbjct: 59  VRAEIVSFS-PHEVELPYEISLVQGIPEAGKMDWIIEKAAELGVHRIVPLATQRSV-VRV 116

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETC 172
           N DR+       ++  +SA+EQC    L  I  P   +  L+N     +I+F   A  + 
Sbjct: 117 NADRIEKRLARWQSIVVSASEQCGRNRLLAIGQPVNFDAYLQNSPEPSKIMFSPRASHSL 176

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S  + +K HAI+      +LIGPEGG+ +EE+E L     VT LS+GPRILR++TA +A
Sbjct: 177 ASWATGQKPHAIS------LLIGPEGGFSAEEEE-LARQKGVTFLSMGPRILRTETAGLA 229

Query: 233 AMALVQAI 240
           A++ + AI
Sbjct: 230 AVSAINAI 237


>gi|296116281|ref|ZP_06834897.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977100|gb|EFG83862.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 247

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 7/225 (3%)

Query: 9   RLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           RLF+D     P+C     +   D+ HYL +VLR+  G  +++FN +DGEW + I  + + 
Sbjct: 6   RLFMDPQAFPPMCPDAVIRLEPDRAHYLGNVLRLSAGGRVVVFNARDGEWSATIEVLRRD 65

Query: 65  I-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               ++ +  R          +F+P+K +  + +I+   E+G+    PVIT  T     N
Sbjct: 66  RGEIRLVHMDRPPRVTQGPGIMFAPLKRDATEMIIRMGTELGVECFYPVITERTNTHRLN 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+      A+EQC+ L +P I P   +   + +   + Q+  A E    + + ++   
Sbjct: 126 EGRLSAIAREASEQCERLDVPAIAPIRPMMEAIAHAPTDMQLFVALERL--DPTAQESEV 183

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               P  A+LIGPEGG+   E++ L   P    LSLGP +LR+DT
Sbjct: 184 PRACPGDALLIGPEGGFSPREQDFLRGRPATRLLSLGPLVLRADT 228


>gi|311695817|gb|ADP98690.1| ribosomal RNA small subunit methyltransferase E [marine bacterium
           HP15]
          Length = 244

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 28/253 (11%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++ +  L   +  +   +   ++  VLRM+ G  +LLFNG   ++ + IS   K  
Sbjct: 2   RIPRIYTNSALAQGSTAELDDNAAQHVGRVLRMQAGQELLLFNGDGNDYPATISSASKK- 60

Query: 66  RFKVEYQ---SRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
              VE Q     + T +S ++ +      K +R+DY +QK+VEMG+  I P+ T    + 
Sbjct: 61  --NVEVQVGTPEANTTESPLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERC-DV 117

Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC 172
               DR        ++  ISAAEQC    +P I P  T+ E+L  + D   ++V    T 
Sbjct: 118 KLKGDREDKRLRHWQSVAISAAEQCGRARVPEILPVMTVSEWLEHSRDCEVRLVLHHRT- 176

Query: 173 GSENSLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             E++L+ +     IP   VA++IGPEGG   EE        F+ P++LGPR+LR++TA 
Sbjct: 177 --EHALKSI-----IPPERVALMIGPEGGLSPEEIAHAEKEGFL-PVALGPRVLRTETAP 228

Query: 231 VAAMALVQAICGD 243
           VAAMAL Q + GD
Sbjct: 229 VAAMALCQWLWGD 241


>gi|229593101|ref|YP_002875220.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           SBW25]
 gi|229364967|emb|CAY53089.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 239

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 123/253 (48%), Gaps = 31/253 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F D PL +    +    Q HY++ VLRM EGD + LF+G   E+L  +  VGK  R
Sbjct: 3   LSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGSLLEVGKK-R 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYT 117
             V+  + S   Q++     SP+         +  R+D+ IQK+ E+G+ AI P+ +   
Sbjct: 61  VTVQL-TESVAGQAE-----SPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRC 114

Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171
                 +     +   R   ISA EQC   T+P I+PP  L   LK  + + ++V     
Sbjct: 115 EVRLKDERADKRLLHWRQVAISACEQCGRSTVPLIHPPLLLADWLKQTEADLKLVL---- 170

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                  E + + A   ++A LIGPEGG    E +      +     LGPR+LR++TA V
Sbjct: 171 ---HPVAEPMVSHAKPSSLAFLIGPEGGLTDAEVQAAQGAGYHAA-RLGPRVLRTETAPV 226

Query: 232 AAMALVQAICGDW 244
            A+A+ Q + GD+
Sbjct: 227 VALAVAQQLWGDF 239


>gi|229586410|ref|YP_002844911.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia africae ESF-5]
 gi|228021460|gb|ACP53168.1| Unknown [Rickettsia africae ESF-5]
          Length = 246

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ + 
Sbjct: 5   RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 65  VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ +   
Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|34580836|ref|ZP_00142316.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262221|gb|EAA25725.1| unknown [Rickettsia sibirica 246]
          Length = 244

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ + 
Sbjct: 5   RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 65  VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ +   
Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|89091936|ref|ZP_01164891.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92]
 gi|89083671|gb|EAR62888.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92]
          Length = 242

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R +   PL  K++ + S +   +++  LRMK GD ++LFNG   E+L+++S V K   
Sbjct: 3   IPRFYDPQPLSEKSEIQLSDEVVQHVSRALRMKVGDQLILFNGNGVEYLAELSQVEKRKA 62

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
           S       QS S+T  + V    S  +  R+DY +QKS EMG+  I P+ +         
Sbjct: 63  SAHIVETIQSNSETPLT-VHIGQSLSRGERMDYAVQKSTEMGVHQITPLFSERCEVKLPE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++  +   ISA EQ   +  P I  P  L+  L   D   ++V       SE  
Sbjct: 122 ERQAKRINHWQQIAISACEQSGRVNPPLIAKPENLKSWLAQQDAELKLVLHHH---SEMP 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+++   +   +VA+LIGPEGG   +E E      F  PL+LGPR++R++TA VAA+ L+
Sbjct: 179 LQEMKPPS---SVALLIGPEGGLTEDEVELAQEFGF-KPLTLGPRVMRTETAPVAALTLL 234

Query: 238 QAICGD 243
             + GD
Sbjct: 235 NYLWGD 240


>gi|229301334|ref|NP_359847.2| hypothetical protein RC0210 [Rickettsia conorii str. Malish 7]
 gi|39932538|sp|Q92J59|RSME_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
          Length = 244

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ + 
Sbjct: 5   RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 65  VRLKEQLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ +   
Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 183 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|157803384|ref|YP_001491933.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia canadensis
           str. McKiel]
 gi|157784647|gb|ABV73148.1| hypothetical protein A1E_01000 [Rickettsia canadensis str. McKiel]
          Length = 257

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 122/218 (55%), Gaps = 3/218 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D + +FNG DGE+L++I+ +GK+ +  
Sbjct: 5   RIYINSHLAENSKLELANDHIHYIKTVLRLKVNDGLRIFNGTDGEFLAQITDIGKNNLSV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           K++ Q +    +S +    + IK ++L   I  + ++G+  I P+IT+  Q    N+ R+
Sbjct: 65  KLKEQLKKPDTESALTLAVAIIKQDKLMLTINMATQLGITKIIPLITKRCQFRSVNIKRL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + L  P I     L+  LK   +N  +++A+E    ENS+ ++ ++ + 
Sbjct: 125 TKCMIEATEQSERLIPPIIEQAIKLQDYLK--KNNNLMLYANEYEKEENSILQITSLLNN 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            ++ I+IGPEGG+  +E + L S      +SLG  ILR
Sbjct: 183 SDIDIVIGPEGGFTIDELQLLASYKNTKSISLGSNILR 220


>gi|15619261|gb|AAL02748.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 257

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 4/219 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFNG DGE+L++I+ +GK+ + 
Sbjct: 18  RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLS 77

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 78  VRLKEQLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 137

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS+ ++ +   
Sbjct: 138 LTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRISSSLS 195

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 196 NSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234


>gi|26991662|ref|NP_747087.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida
           KT2440]
 gi|24986759|gb|AAN70551.1|AE016697_6 conserved hypothetical protein TIGR00046 [Pseudomonas putida
           KT2440]
 gi|313500961|gb|ADR62327.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 239

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+  ++  VG K++
Sbjct: 3   LSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R  ++     Q       ++   + +  R+D+ IQK+ E+G   I P+++         +
Sbjct: 62  RVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   TLP I+PP TL   L +   + ++V            
Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L +      +A +IGPEGG    E E   +  F     LGPR+LR++TA V A+++ Q
Sbjct: 175 EPLISHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHA-ARLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|189184337|ref|YP_001938122.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda]
 gi|189181108|dbj|BAG40888.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda]
          Length = 263

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 24/246 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R++   PL      K S +Q +Y+ +VLR K  D I +FN  +GE+L+ I +   K +
Sbjct: 6   LHRIYSSIPLSKAGTIKLSREQTNYIINVLRCKNNDKIRVFNELNGEYLAIIHHTNNKQV 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP-------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
             ++  Q++   K+ D     SP       IK  R+  +I  + + G+  I P+I+ Y+Q
Sbjct: 66  LLQIINQTKVVEKEVDENN--SPLVLAQCIIKPERMARVIDMATQAGITNIVPIISEYSQ 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +  +N+++     I +  Q + LT+P +  P TL   L   +  C I+ A+E        
Sbjct: 124 HLKFNIEKYNKIIIESCRQSERLTMPILSSPVTLSHFLSQSNSGC-ILCANEQ------- 175

Query: 179 EKLHAIAHIP-----NVAILIGPEGGYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVA 232
           E++  I HIP       +ILIGPEGG+  +++  L      +  +S+G  +LRS+TAA+ 
Sbjct: 176 ERIQQIHHIPASILSKASILIGPEGGFSEQDQSILRKAGGLIKSISIGRNVLRSETAAIY 235

Query: 233 AMALVQ 238
            ++ +Q
Sbjct: 236 LLSQLQ 241


>gi|170719665|ref|YP_001747353.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619]
 gi|169757668|gb|ACA70984.1| protein of unknown function DUF558 [Pseudomonas putida W619]
          Length = 239

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+L ++  VG K+
Sbjct: 2   RLSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
           +R  ++     Q +     ++   + +  R+D+ IQK+ E+G   I P+++         
Sbjct: 61  VRVSLDQAVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC    LP I  P TL   +K  D + ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSILPIIRAPVTLGDWIKGSDADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +      +A LIGPEGG    E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPARLAFLIGPEGGLSEAEVDQAKGAGF-QAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|148284290|ref|YP_001248380.1| hypothetical protein OTBS_0493 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739729|emb|CAM79559.1| conserved hypothetical protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 250

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R++   PL      K S +Q +Y+ +VLR K  D I +FN  +GE+L+ I +   K +
Sbjct: 6   LHRIYSSIPLSKAGTIKLSREQANYIINVLRCKNNDQIRVFNELNGEYLAIIHHNNNKEV 65

Query: 66  RFKVEYQSRSQTKQSDVQ---YIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
             ++  Q++   K+ D      + +   IK  R+  +I  + ++G+  I P+I+ Y+Q+ 
Sbjct: 66  LLQIINQTKVVAKEVDANNSHLVLAQCIIKPERMARVIDMATQVGITNIVPIISEYSQHL 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            +N ++     I +  Q + LT+P +  P TL   L   +  C I+ A+E        EK
Sbjct: 126 KFNTEKYNKIIIESCRQSERLTIPILSSPVTLLHFLSQSNSEC-ILCANEQ-------EK 177

Query: 181 LHAIAHIP-----NVAILIGPEGGYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAM 234
           +  I HIP       +ILIGPEGG+  +++  L      +  +S+G  +LRS+TAA+  +
Sbjct: 178 IQQIHHIPASILSKASILIGPEGGFSEQDQSILRKAGRLIKSISIGRNVLRSETAAIYLL 237

Query: 235 ALVQ 238
           + +Q
Sbjct: 238 SQLQ 241


>gi|237749444|ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380806|gb|EEO30897.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 242

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RLF DFPL + T      +   ++  VLR+ EG+ I+LFNG+ GE+ ++I  + ++ +
Sbjct: 1   MTRLFCDFPLVVGTNIDLPKETSRHI-QVLRLTEGNEIVLFNGEGGEYSARIISLDRT-K 58

Query: 67  FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
             V+  SR   +     D+    +  +  ++D++I+K+VE+G   I+P      V+    
Sbjct: 59  TNVKILSRHDREVELPYDITLAQALPEAGKMDWIIEKAVELGAAGIQPLAAQRSVVRLNA 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + R +T   +A+EQC   TL  I  P      + N     +++F      + + 
Sbjct: 119 DRAEKRLARWQTIVTAASEQCGRNTLMEISEPVAFNTFIDNSGGCLRVMFTPRATETLSG 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +  A   I    I+IGPEGG+  EE+E L     V PLS+G RILR++TA +AA++ +
Sbjct: 179 WARKQAPQAI---TIMIGPEGGFSPEEEE-LAIQNGVIPLSMGSRILRTETAGMAAISAI 234

Query: 238 QAI 240
            AI
Sbjct: 235 NAI 237


>gi|77461509|ref|YP_351016.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           Pf0-1]
 gi|77385512|gb|ABA77025.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R F+D PL      +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  +
Sbjct: 3   LSRFFIDAPLSTGEH-ELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKKRV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +++ Q   Q +     ++   + +  R+D+ IQK+ E+G+  I P+ +         +
Sbjct: 62  VVQIDEQFAGQVESPLKIHLGQGLSRGERMDWAIQKATELGVTEITPIFSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC    +P I+PP  L   LK  +   ++V            
Sbjct: 122 RADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + A    +A LIGPEGG    E E   +  F     LGPR+LR++TA V A+A+ Q
Sbjct: 175 EPLVSHAKPSTLAFLIGPEGGLSDAEVEQAKAGGF-HAARLGPRVLRTETAPVVALAVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|148550061|ref|YP_001270163.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1]
 gi|148514119|gb|ABQ80979.1| protein of unknown function DUF558 [Pseudomonas putida F1]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+  ++  VG K++
Sbjct: 3   LSRFFIDAPLSLGEHDLPEA-QAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R  ++     Q       ++   + +  R+D+ IQK+ E+G   I P+++         +
Sbjct: 62  RVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   TLP I+PP  L   L +   + ++V            
Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLAEWLSSTKADLKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L +      +A +IGPEGG    E E   +  F     LGPR+LR++TA V A+++ Q
Sbjct: 175 EPLTSHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHA-ARLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|325983172|ref|YP_004295574.1| ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
           AL212]
 gi|325532691|gb|ADZ27412.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
           AL212]
          Length = 248

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 11/230 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQSDV 82
           S +  H+   VLR+K G+ I +FNG  GE+ + I  + KS    +   Y    +     +
Sbjct: 20  SAENKHHATRVLRLKNGNPITIFNGLGGEFSAHIEAISKSSATVLIDAYHHTDRESPLSI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           +   +     ++D++IQKSVE+G+  I+PV T  +      + ++  +   +   ISA E
Sbjct: 80  ELAQAICINEKMDWIIQKSVELGITRIQPVFTARSIVHLSDERSYKRLQHWKKIIISACE 139

Query: 137 QCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           QC    LP + P   L   L  K   H    V    +  + N L+ +   A   N+ ++I
Sbjct: 140 QCGRNCLPQVLPLIPLAEWLSQKKTSHCANDVHLMLSTRTTNGLKNISKPAADANITLVI 199

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG+ +EE+  +    F+ PL LG RILR+++AA+A +A +QA+ GD+
Sbjct: 200 GPEGGFTAEEETAISYSGFI-PLRLGKRILRTESAALATIAAMQALWGDY 248


>gi|83644376|ref|YP_432811.1| 16S ribosomal RNA methyltransferase RsmE [Hahella chejuensis KCTC
           2396]
 gi|83632419|gb|ABC28386.1| uncharacterized protein conserved in bacteria [Hahella chejuensis
           KCTC 2396]
          Length = 247

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 17/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R+F+D PL   +Q   +GDQ +Y+  VLRM+ GD   LF+G   ++  K+  VG+     
Sbjct: 5   RIFIDQPLDGLSQLTLTGDQANYVGRVLRMRPGDAFHLFSGDGRDFPVKVLAVGRRDVEV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
              +  +   +S ++     +  +  R+DY +QKS EMG+ A+ P+++   +    + +R
Sbjct: 65  ALSEPLAIEAESPLRVHLGQVLSRGERMDYAVQKSTEMGVTALTPLLSERCE-VRLDGER 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                   R  +ISA EQC    +P I   T LE  L++   + +++      G   +  
Sbjct: 124 QDKRWRHWRQVSISACEQCGRARVPDIGDVTPLESWLQSATADLKLILHP---GDARAWS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                A   +V +LIGPEGG+  EE        FV    LGPRILR++TA VAA+AL+Q 
Sbjct: 181 PAQPPA---SVCLLIGPEGGFTDEEVALAERHGFVH-APLGPRILRTETAPVAALALMQW 236

Query: 240 ICGD 243
           + GD
Sbjct: 237 LWGD 240


>gi|330812331|ref|YP_004356793.1| RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380439|gb|AEA71789.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 239

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R F+D PL +    +    + HY+  VLRM EGD + +F+G   E+   ++ VGK  +
Sbjct: 3   LSRFFIDAPLSLGDH-ELPEAKAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKRV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           R +++ Q   Q +     ++   + +  R+D+ IQK+ E+G+  I P+ +         +
Sbjct: 62  RVQLDEQFAGQPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   R   ISA EQC   ++P I+PP  L   LK  +   ++V            
Sbjct: 122 RADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAELRLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L +      +A LIGPEGG    E E   +  +     LGPR+LR++TA V A+A+ Q
Sbjct: 175 EPLVSHDKPSTLAFLIGPEGGLSDAEVEQAKTAGYHA-ARLGPRVLRTETAPVVALAVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|146284257|ref|YP_001174410.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
           A1501]
 gi|145572462|gb|ABP81568.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 238

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 20/248 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F+D PL +           HY+  VLR+  G  + LF+G   E+  ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGQHALPEASA-HYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKKS 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                Y+  +   +S ++        +  R+D+ IQK+ E+G+  I P+I+   +    N
Sbjct: 61  VSVELYERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCE-VRLN 119

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R        R   ISA EQC    LP I+ P TL    ++W      V AD       
Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTL----RDWLD----VEADLKLVLHP 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L + A   ++A LIGPEGG    E E      F+ P  LGPR+LR++TA V A+++
Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDSEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 231 AQQLWGDF 238


>gi|330501385|ref|YP_004378254.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
 gi|328915671|gb|AEB56502.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
          Length = 239

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 119/259 (45%), Gaps = 45/259 (17%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F+D PL +  Q +    Q HY+  VLR   GD + LF+G   E+L ++  VGK   
Sbjct: 3   LSRFFIDAPLSL-GQHELPEAQAHYIGRVLRHAVGDAVQLFDGSGQEYLGELIEVGKK-- 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTN---------RLDYMIQKSVEMGMGAIRPVITRYT 117
                  R + ++S      SP++ +         R+D+ IQK+ E+G   I P+++   
Sbjct: 60  -----SVRVELRESIAGLAESPLRIHLGQGLSRGERMDWAIQKATELGASEITPIVSTRC 114

Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171
                 +     M   R   ISA EQC    LP I+ P  L+  L+  + + ++V     
Sbjct: 115 EVRLKDERADKRMAHWRQVAISACEQCGRSVLPLIHAPLELDAWLQQIEADLKLV----- 169

Query: 172 CGSENSLEKLHAIA-----HIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
                    LH +A     H P   +A LIGPEGG    E +      F     LGPR+L
Sbjct: 170 ---------LHPVAEPWVGHAPPRALAFLIGPEGGLSDAEVDQAKGAGFHAA-RLGPRVL 219

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA V A+++ Q + GD
Sbjct: 220 RTETAPVVALSVAQQLWGD 238


>gi|226942481|ref|YP_002797554.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii
           DJ]
 gi|226717408|gb|ACO76579.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 239

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            L R F+D PL +         Q HY+  VLR+  GD + LF+G   E+  ++  VG KS
Sbjct: 2   RLSRFFIDAPLALGLLDLPEA-QAHYIGRVLRLAPGDAVQLFDGSGREFRGELVEVGKKS 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q     +     ++   + +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   +   ISA EQC    LP I+PP  LE  LK  +   ++V           
Sbjct: 121 ERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVL-------HPF 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG  SE +             LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLASHARPASLAFLIGPEGGL-SETEVDAARRAGYRAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|92112185|ref|YP_572113.1| hypothetical protein Csal_0049 [Chromohalobacter salexigens DSM
           3043]
 gi|91795275|gb|ABE57414.1| 16S rRNA m(3)U-1498 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 242

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++A  LR++EG  + LF+G+  E  ++I  VG+  +R ++   +    +     ++   I
Sbjct: 27  HVAGALRLREGAALRLFDGEGHEADAEIVAVGRREVRVRITAVTEGGAESPLAVHLGQAI 86

Query: 90  -KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
            K +R+DY IQK+ E+G+ AI P+ T +       +     +   +   +SA EQC    
Sbjct: 87  SKGDRMDYAIQKATELGVAAITPLYTEHGDVRLKGEREAKKLAHWQAVAVSACEQCGRSR 146

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P ++PP TL+  L   D   ++V    T  +       HA + +  VA+L+GPEGG   
Sbjct: 147 VPTVHPPQTLDAWLARRDETLRLVLHPSTDTTWR-----HA-SDVARVALLVGPEGGLSP 200

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            E +T  +  F   L+LGPRILR++TA V A+ L+Q   GD
Sbjct: 201 NEIDTARAADFAA-LTLGPRILRTETAPVVALTLLQYHFGD 240


>gi|327482639|gb|AEA85949.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
           4166]
          Length = 238

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 22/248 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F+D PL +           HY+  VLR+  G  + LF+G   E+  ++  VGK   
Sbjct: 3   LSRFFIDAPLSLGQHALPEAS-AHYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKK-S 60

Query: 67  FKVEYQSR-SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             VE   R +   +S ++        +  R+D+ IQK+ E+G+  I P+I+   +    N
Sbjct: 61  VSVELHERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCE-VRLN 119

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R        R   ISA EQC    LP I+ P TL    ++W      V AD       
Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTL----RDWLD----VEADLKLVLHP 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L + A   ++A LIGPEGG    E E      F+ P  LGPR+LR++TA V A+++
Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDNEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 231 AQQLWGDF 238


>gi|146305452|ref|YP_001185917.1| hypothetical protein Pmen_0412 [Pseudomonas mendocina ymp]
 gi|145573653|gb|ABP83185.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas mendocina ymp]
          Length = 241

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 19/246 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L R F+D PL +  Q      Q HY+  VLR   GD + LF+G   E+L ++  VG KS+
Sbjct: 3   LSRFFIDAPLSL-GQHDLPEAQAHYIGRVLRHAVGDALQLFDGSGQEYLGELIEVGKKSV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++       ++     ++   + +  R+D+ IQK+ E+G   I P+++         +
Sbjct: 62  RVELREAIAGMSESPLRIHLGQGLSRGERMDWAIQKATELGAAEITPIVSARCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                M   R   ISA EQC    LP I PP  L   L+  + + ++V          S 
Sbjct: 122 RADKRMAHWRQVAISACEQCGRSVLPLINPPLELAAWLQQIEADLKLVL-HPVAAPLQSH 180

Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +K       PN +A L+GPEGG    E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 181 DK-------PNSLAFLVGPEGGLSEAEVDQTKAAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGD 243
           Q + GD
Sbjct: 233 QQLWGD 238


>gi|297170744|gb|ADI21766.1| uncharacterized protein conserved in bacteria [uncultured gamma
           proteobacterium HF0130_22O14]
          Length = 246

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 25/251 (9%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            ++R  VD     K+  + +G+Q HY+  VLR++ GD ++LF+G   EW +KI    ++ 
Sbjct: 5   RIQRFHVDQIDNSKSHLEIAGEQSHYVTRVLRLQTGDRMILFDGSGSEWTAKIIDTKRN- 63

Query: 66  RFKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120
           R  +E + R+   +    ++  I S  ++ R+D ++QKS E+G+  I PV   ++ NT  
Sbjct: 64  RLLLELEERATPDRESPINLTLIQSISRSQRMDLVMQKSTELGVTRIVPV---FSTNTIV 120

Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEF-LLKNWDHNCQIVFADETC 172
             N D++       R   ISA+EQ     +P +  P  LE   LK +  +  I +  +T 
Sbjct: 121 KMNEDKIEKKINHWRNILISASEQSGRTKIPDLISPIQLETECLKRYKSDLSIFY--DTT 178

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           G ++     +   +  ++  +IGPEGG+  +EK+      ++  +  GPR+LR++TA + 
Sbjct: 179 GKDS-----YDANNPKDITAVIGPEGGFTEDEKQIAIDAGYMV-MQSGPRLLRTETAPIM 232

Query: 233 AMALVQAICGD 243
           A++++Q + GD
Sbjct: 233 ALSILQYLYGD 243


>gi|325295443|ref|YP_004281957.1| ribosomal RNA small subunit methyltransferase E [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065891|gb|ADY73898.1| Ribosomal RNA small subunit methyltransferase E [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 241

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 16/227 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV--EYQSRSQTKQSDV 82
           G +  +   VLR+++GD I++F+G+  E+L++I      S+R KV  E      +     
Sbjct: 18  GQEARHALKVLRLRKGDEIIIFDGEGREYLAEIEAASPTSVRLKVLEEININRDSHLKTT 77

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY------NMDRVRTYTISAAE 136
            Y+    K  + +  IQK+ E+G+  I PV+ + + N          + R     ++AA+
Sbjct: 78  LYMGLTNKLQKFELAIQKATELGVTEIIPVVCKRSSNAQNIKNWDNKLRRWEEIVVNAAK 137

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    LP ++ P  L  +    ++N  ++F     G + SL+   + +   +V++++GP
Sbjct: 138 QCGRNILPIVHSPVKLPEI----ENNSDLLFVLWEKGGK-SLKDYESFSA-SSVSLIVGP 191

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG+  EE E L    F  P+ LG RILR++TAA+A M LVQ + GD
Sbjct: 192 EGGFDKEEIEILKEKGF-KPIYLGKRILRAETAAIAGMTLVQFLWGD 237


>gi|91205956|ref|YP_538311.1| hypothetical protein RBE_1141 [Rickettsia bellii RML369-C]
 gi|157826683|ref|YP_001495747.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia bellii OSU
           85-389]
 gi|91069500|gb|ABE05222.1| unknown [Rickettsia bellii RML369-C]
 gi|157801987|gb|ABV78710.1| hypothetical protein A1I_01600 [Rickettsia bellii OSU 85-389]
          Length = 234

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R++++  L    + +   D  HY+  VLR+K  D   +FNG DGE+L++I+ + ++ +  
Sbjct: 5   RIYINNHLAENIKLELGSDHTHYIKTVLRLKVNDQFRIFNGTDGEFLAQITKLDRNNLII 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            ++   R    +S +    S IK ++L   I  + ++G+  I  +IT   Q    N++R+
Sbjct: 65  TIQECLRKPRAESSLTLAMSIIKQDKLMLAINMATQLGVTKIVTLITERCQFRSVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I A EQ + L  P I P  +++  LK   +N  +++A+E    ENS+ KL+    I
Sbjct: 125 TKCVIEATEQSERLNPPVIEPAISIQNYLK--KNNNFVLYANEHEKEENSILKLNK--DI 180

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            N++I+IGPEGG+ ++E   L S      +SLG  ILR
Sbjct: 181 TNISIVIGPEGGFTNDEIALLASYKNAYSISLGKNILR 218


>gi|330964692|gb|EGH64952.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 239

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  +
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++      Q +     ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVQLNKCFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                    +   ISA EQC    +P I+PP TL   +K  + + ++V            
Sbjct: 122 RAEKRQAHWQQIAISACEQCGRSVVPVIHPPMTLADWIKLTEADLKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ Q
Sbjct: 175 EPLTSHAKPVSLAFLIGPEGGLNDAEVDQAQTAGFHAA-RLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|213971885|ref|ZP_03399986.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
 gi|301385288|ref|ZP_07233706.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061292|ref|ZP_07252833.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato K40]
 gi|302131396|ref|ZP_07257386.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923369|gb|EEB56963.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
          Length = 239

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +V+   R   Q +     ++   + +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|158521743|ref|YP_001529613.1| hypothetical protein Dole_1732 [Desulfococcus oleovorans Hxd3]
 gi|158510569|gb|ABW67536.1| protein of unknown function DUF558 [Desulfococcus oleovorans Hxd3]
          Length = 245

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 15/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D           +G   +++ +VLRMK GD I LFNG   E+   I  V  S  
Sbjct: 1   MRRFFIDAAAAAGAICPITGPDANHIKNVLRMKPGDAIWLFNGAGMEFKGVIHSV-DSEA 59

Query: 67  FKVEYQSR-SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             VE     S   +S ++   +   +K  ++D +++++ E+G+    PV T+ T      
Sbjct: 60  VTVEITGAFSCATESPIRLTLAQAFLKDKKMDALVRQATELGVTRWIPVFTQRTIPRPDA 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETC-GSE 175
           +     M+R +     + +QC    LP I PP   E LL ++ D + +I+FAD    G  
Sbjct: 120 RRVSSRMERWQAIAAESLKQCGRGRLPEIEPPILFEDLLSRSDDWSLKIIFADAKAPGLN 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           ++L    A      V ++IGPEGG+  EE +      F+   SLGPRIL++DTA V A A
Sbjct: 180 DTLPSQEATVR--RVLVMIGPEGGFTPEEIDRAIKKGFIA-ASLGPRILKADTATVGACA 236

Query: 236 LVQAICGD 243
           +VQ + GD
Sbjct: 237 IVQHLLGD 244


>gi|28872189|ref|NP_794808.1| hypothetical protein PSPTO_5076 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855443|gb|AAO58503.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 239

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFSGTLLEVGKK-R 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +V+   R   Q +     ++   + +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|330878069|gb|EGH12218.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 239

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  +
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++      Q +     ++   + +  R+D+ IQK+ E+G+  I P+++         +
Sbjct: 62  RVQLTECFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                    +   ISA EQC    +P I+PP  L   +K  D + ++V            
Sbjct: 122 RAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTDADLKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + A   ++A LIGPEGG +  E     +  F     LGPR+LR++TA V A+++ Q
Sbjct: 175 EPLTSHARPASLAFLIGPEGGLNDAEVHQAQTAGFHAA-RLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|238651023|ref|YP_002916879.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str.
           Rustic]
 gi|238625121|gb|ACR47827.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str.
           Rustic]
          Length = 244

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           R++++  L   ++ + + D + HY+  VLR+K  D + LFN  DGE+L++I+ +GK+ + 
Sbjct: 5   RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNSTDGEFLAQINDIGKNNLS 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q    N++R
Sbjct: 65  VRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVNIER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           +    I A EQ + LT P I    T++ +L KN +    +++A+E    ENS+ ++ +  
Sbjct: 125 LTKCVIEATEQSERLTPPIIEKAITIQDYLKKNKN---LMLYANEHEKEENSILRISSSL 181

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              ++ I++GPEGG+ ++E E L S      + LG  ILR
Sbjct: 182 SNSDITIIVGPEGGFTNDELELLASYKNTKSIILGSNILR 221


>gi|330957011|gb|EGH57271.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 239

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  +
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKRV 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++      Q +     ++   + +  R+D+ IQK+ E+G+  I P+I+         +
Sbjct: 62  RVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIISERCEVRLKDE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                    +   ISA EQC    +P I+PP  L   ++  + + ++V            
Sbjct: 122 RAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIRLTEADLKLVL-------HPVA 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ Q
Sbjct: 175 EPLTSHAKPASLAFLIGPEGGLNEAEVDQAQTAGFHAA-RLGPRVLRTETAPVVALSVAQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 QLWGDF 239


>gi|289209554|ref|YP_003461620.1| hypothetical protein TK90_2394 [Thioalkalivibrio sp. K90mix]
 gi|288945185|gb|ADC72884.1| protein of unknown function DUF558 [Thioalkalivibrio sp. K90mix]
          Length = 255

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           L  D  L       AS D+ HY  +VLR+K      +F+G+  E+ +++   G+ S  F 
Sbjct: 7   LINDTDLAAGQSIPASQDRLHYATNVLRLKNDAACRVFDGQGNEFHARLEVTGRRSGTFH 66

Query: 69  VEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMD 125
           +  ++ + T  +  ++ +    + + +D  +QK+VE+G+  IRPV+   +++   H  +D
Sbjct: 67  LGDRAAAPTTPARPIELLQGIARGDHMDLAVQKAVELGISVIRPVLCERSRSAAAHRGLD 126

Query: 126 RVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           + + +      +AAEQC    LP + PP TL+  L        +V  ++      +L+  
Sbjct: 127 KRQAHWAGIIQAAAEQCGRNELPLLVPPATLDEALDASSPGLDLVADEQGPPLSGALDSF 186

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                   V ILIGPEGG   EE+    +  F   +++GPR LR++TAA++ + LVQ   
Sbjct: 187 GKGGTSGRVRILIGPEGGLTDEERIQARNAGFQA-VAMGPRTLRTETAAISLLTLVQWRL 245

Query: 242 GD 243
           GD
Sbjct: 246 GD 247


>gi|166712896|ref|ZP_02244103.1| hypothetical protein Xoryp_15990 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 244

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 16/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL  + +   S +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCEQEVALSEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +    E+
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEH 178

Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            L  L   + IP ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A
Sbjct: 179 RLGTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIA 235

Query: 236 LVQAICGD 243
            +Q+  GD
Sbjct: 236 ALQSRFGD 243


>gi|239948513|ref|ZP_04700266.1| ribosomal RNA small subunit methyltransferase E [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922789|gb|EER22813.1| ribosomal RNA small subunit methyltransferase E [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 298

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 141/283 (49%), Gaps = 51/283 (18%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R++++  L   ++ + +GD  HY+  VLR+K  D + +FNG DGE+L++I+ +GK ++  
Sbjct: 5   RIYINSRLAENSKLELAGDHVHYVKTVLRLKVNDGLRIFNGMDGEFLAQITDIGKHNLSV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +++ Q +    +S +    S IK ++L   I  + ++G+  I P+ITR  Q    N++R+
Sbjct: 65  RLKEQLKKPYTESTLILAISIIKQDKLMLAINMATQLGITKIIPLITRRCQFRSVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-LEKLHAIAH 186
               I A EQ + LT P I    T++  LK   +N  +++A+E    ENS L  L ++++
Sbjct: 125 TKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSILRILSSLSN 182

Query: 187 I-----------------------------------------------PNVAILIGPEGG 199
           I                                                ++ I++GPEGG
Sbjct: 183 IYSCEMKRGYTKNNLEKSKESVSRGAERILIREHLRTYKDDVANFSSSSSITIIVGPEGG 242

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           + ++E E L S      +SLG  ILR++TAA+ A+A V+  CG
Sbjct: 243 FTNDELELLASYKNTKSISLGSNILRAETAAITAIAQVRLWCG 285


>gi|88608373|ref|YP_505938.1| hypothetical protein NSE_0036 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600542|gb|ABD46010.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 227

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 120/217 (55%), Gaps = 26/217 (11%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQS--DVQYIF 86
           HYL  V+R+++   +++FNG+ GEW++K+++      F V + Q R QT     D+   F
Sbjct: 22  HYLFSVMRLQKEGQVIVFNGRSGEWIAKVNH-----NFLVPDIQIRPQTASYPYDINLCF 76

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +  K   L  +++++ E+ +  +RP+ +  T+N + +++++  + I AA+QC  +++P +
Sbjct: 77  AVPKHKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQCRRMSIPVL 136

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA---ILIGPEGGYHSE 203
            PP  L+  ++ +  N  +   DET            I  IP ++   I+IGPEGG+  E
Sbjct: 137 LPPIALKE-VETYHEN--VFICDETLSDS-------VICDIPILSSYTIVIGPEGGFSHE 186

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E   ++       +SLG  ILR  TAA +A+A V+++
Sbjct: 187 ELSLINKR-----ISLGRTILRCSTAATSAIAQVRSV 218


>gi|331007217|ref|ZP_08330426.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC1989]
 gi|330418984|gb|EGG93441.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC1989]
          Length = 257

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 47/271 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-----GKDGEWLSKISY 60
           H+ R+++  PL   TQ +      H+L  V+RMK G  ++LFN     G+ GE+ + ++ 
Sbjct: 2   HIPRIYIPLPLSEHTQIELDKASMHHLVTVMRMKVGRQVILFNNVPIDGRYGEFTATLAS 61

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSP---------IKTNRLDYMIQKSVEMGMGAIRP 111
           V K        Q+R    +     I SP         IK +R+D+++QK+ E+G+  I P
Sbjct: 62  VDKK-------QARVDIGEFVSPQIESPLQVHLGACLIKNDRMDWLLQKATELGVSEITP 114

Query: 112 VITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE------------ 153
           + ++YT      +     M   R   I+A EQ   + LP ++ P  LE            
Sbjct: 115 LFSQYTDVKLPAERIEKKMGHWRKIVINACEQSGRVRLPVLHTPLALEKWVASSTHVRQK 174

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
           F+L  +  +     AD     E+SL      + I  +A+L+GPEGG   +E +      F
Sbjct: 175 FVLHPYASSSPHTSADRP--QESSLS-----SDINAIALLVGPEGGLTEDEVDLAVQSQF 227

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              + LGPRILR++TA + A+A++    GD+
Sbjct: 228 -KGMRLGPRILRAETAPLVALAVLSQQLGDF 257


>gi|307824730|ref|ZP_07654953.1| protein of unknown function DUF558 [Methylobacter tundripaludum
           SV96]
 gi|307734088|gb|EFO04942.1| protein of unknown function DUF558 [Methylobacter tundripaludum
           SV96]
          Length = 253

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 25/252 (9%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            + RL+   PL      +   D  HY+  VLR+K+  +I+LFNG  GE+L  ++ V  K+
Sbjct: 2   RVSRLYTSAPLATGKLIELDDDNGHYVRTVLRLKKDAHIILFNGHGGEYLCTVAEVSRKA 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
           +   V ++  RS      +       + +R+D  +QK+VE+G+  I P++T         
Sbjct: 62  VLIDVGQWSDRSVESPLQITLGLGISRGDRMDLTVQKAVELGVNHITPLLTERCVVQFKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFAD---ETC 172
           +     +   +     AAEQ    +LP   P   +E  L+NW  N Q   VF D   ET 
Sbjct: 122 EKKPQRLLHWQKIVQHAAEQSGRTSLP---PLLEVE-QLQNWLGNQQGLKVFLDPYAETT 177

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            SE   E +        V +L GPEGG+ ++E++   +  F+ P+ LG RILR++TA++A
Sbjct: 178 LSELKPETM-------KVTLLTGPEGGFSNQERDAAKASGFI-PVRLGSRILRTETASLA 229

Query: 233 AMALVQAICGDW 244
           A+A VQ + GD+
Sbjct: 230 ALAAVQMLWGDF 241


>gi|53802677|ref|YP_112559.1| hypothetical protein MCA0018 [Methylococcus capsulatus str. Bath]
 gi|53756438|gb|AAU90729.1| conserved hypothetical protein TIGR00046 [Methylococcus capsulatus
           str. Bath]
          Length = 243

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + RL++  PL         G++ HYL  VLR+K G ++ +FNG+ GE+ ++I    +  
Sbjct: 2   RISRLYLPVPLASGADVVLDGERAHYLRTVLRLKRGFDLTVFNGEGGEFAARIGVCHREA 61

Query: 66  RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   R   ++S  DV+      +  R+D  IQK+VE+G+GAI P+ T         
Sbjct: 62  VSLTVGAHRPDDRESRLDVRLGLGISRGERMDLAIQKAVELGVGAITPLFTERCVVQLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++  R    +A EQ     +P +  P +LE  L               C   ++
Sbjct: 122 ERKAQRLEHWRRVVWAACEQSGRNRVPEVLEPRSLEAWLPE-------AAGLRICLDPHA 174

Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +  L  +A  + +V +L GPEGG+   E++   +  FV P+ LGPR+LR++TAA+AA+A 
Sbjct: 175 VHGLRELAPPVGSVTLLSGPEGGFSDAERDMAVAAAFV-PIRLGPRVLRTETAALAALAA 233

Query: 237 VQAICGD 243
           +Q + GD
Sbjct: 234 IQTLWGD 240


>gi|56461316|ref|YP_156597.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina loihiensis
           L2TR]
 gi|56180326|gb|AAV83048.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
          Length = 243

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    + ++ + + S D + +L  VLR+  GD+I+LFNG    + +KI+ V K  
Sbjct: 2   RVPRIYHPASISLQNETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              V   S++   +S V    + +  + +R+D+++QKSVE+G+  I P+ +        +
Sbjct: 62  AQFVATSSQANASESPVNIHLAQVVSRGDRMDFVLQKSVELGVTEITPLFSERC-GVKLS 120

Query: 124 MDRVRTYTI-------SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            DR+    +       SA EQC    +P + P   L   + +     ++          +
Sbjct: 121 GDRLEKKQLQWQKIVHSACEQCGRSVVPQVKPAQQLTDFIASSFEGLRLTLDPTATQPLS 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S ++         + +LIGPEGG+   E      L F  P+ LGPRILR++TAA++A+  
Sbjct: 181 SFQQAEK-----GIQLLIGPEGGFTDTEVSAAGQLGF-KPMRLGPRILRTETAALSALTA 234

Query: 237 VQAICGD 243
           VQ   GD
Sbjct: 235 VQYQFGD 241


>gi|71898620|ref|ZP_00680790.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
 gi|71731567|gb|EAO33628.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
          Length = 244

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
               I    E  + S    + VQ I    +  ++D ++QK+ E+G+ AI PV T  +   
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAI---TRGEKMDLIVQKATELGVVAIVPVDTERS-GV 117

Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
             + +RV           ISA EQC    +P +  P  L+ L +  D +   +  D    
Sbjct: 118 RLDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPCALQVLPEILDPDTLRLILDPK-- 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           SE+ L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A
Sbjct: 176 SEHRLSTLSRLTPV-EVTIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233

Query: 234 MALVQAICGD 243
           +A++QA  GD
Sbjct: 234 IAVLQAQLGD 243


>gi|302389476|ref|YP_003825297.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM
           16646]
 gi|302200104|gb|ADL07674.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM
           16646]
          Length = 256

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 19/233 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSD 81
           SG+  H++A VLRM +GD + L NG D     +I  +    + I+ KV  +++ + ++  
Sbjct: 19  SGEDAHHIARVLRMGKGDLLSLSNGLDALGTGQILELFPEDRKIKVKVIEKNKFEPRRPR 78

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
           +    S  K  + D ++QK+ E+G+    PVIT  T      ++     +R R  T  AA
Sbjct: 79  ITLFQSVPKGQKFDLILQKNTELGVSEFVPVITERTVVEIEGESKSKKAERWRKITKEAA 138

Query: 136 EQCDILTLPFIYPPTTLEF---LLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNV 190
           +QC    LP +  P + +    LLKN+    +IV        E  L+ +  +    +P++
Sbjct: 139 KQCRRPDLPVVREPVSFDGCLELLKNY----RIVLVPWEGEREVFLKSILSNVPPDVPDI 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           A+LIGPEGG+  +E E       VT +SLGPRILR++TA     A++    GD
Sbjct: 195 AVLIGPEGGFSVQEIERARKSGAVT-VSLGPRILRTETAGFVVTAVLMYELGD 246


>gi|325914126|ref|ZP_08176479.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539629|gb|EGD11272.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937]
          Length = 244

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 32/256 (12%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLRCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGK-- 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTN---------RLDYMIQKSVEMGMGAIRPVITRY 116
                 ++R+  +++D+    SP++           ++D ++QK+ E+G+ AI PV    
Sbjct: 60  -----REARALIERADMLSNESPLRITLLQGIARGEKMDLILQKATELGVTAIVPV---N 111

Query: 117 TQNTHYNMD------RV---RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
            + T   +D      RV   R   +SA EQ     +P +  P  L+   +  D   + + 
Sbjct: 112 AERTEVKLDAARMEKRVAHWRNVVVSACEQSGRARVPTVAAPLGLQEAAQTSDPQVRRLT 171

Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            D     E+ L  L A      + + IGPEGG+   ++ TL    F T L LGPRILR++
Sbjct: 172 LDPQ--GEHRLSTLRADVE-QGLIVAIGPEGGWSPRDRATLADAGF-TGLQLGPRILRTE 227

Query: 228 TAAVAAMALVQAICGD 243
           TA +AA+A +QA  GD
Sbjct: 228 TAGLAAIAALQARFGD 243


>gi|197334623|ref|YP_002155192.1| protein YggJ [Vibrio fischeri MJ11]
 gi|197316113|gb|ACH65560.1| protein YggJ [Vibrio fischeri MJ11]
          Length = 243

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 30/246 (12%)

Query: 15  PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           P  + +QGK   S D  +++  V+RMKEG+++LLF+G   E+ + I+   K    +VE  
Sbjct: 9   PELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGAEFPAVITSASKK-SVEVEIT 67

Query: 73  SR-SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123
            R  ++ +S +      +  + +++++ IQKSVE+G+  I P+I+         +     
Sbjct: 68  ERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNVITPLISERCGVKLNKERFEKK 127

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKL 181
           +D+ +   I+A EQC   T+P I P  +LE     W   C    A+E  G + +L     
Sbjct: 128 LDQWQKIAIAACEQCGRNTIPEIRPIMSLE----EW---C----AEEYDGLKLNLHPRAK 176

Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++I  +P    NV +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 177 YSINTLPEPVTNVRLLIGPEGGLSSDEINMTEQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|237798149|ref|ZP_04586610.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021001|gb|EGI01058.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 239

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQVHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKK-R 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
            +V+   R   Q +     ++   + +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQMTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEIDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|289625569|ref|ZP_06458523.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647472|ref|ZP_06478815.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485033|ref|ZP_07003130.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160443|gb|EFI01467.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330865771|gb|EGH00480.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 239

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+G I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|28198087|ref|NP_778401.1| hypothetical protein PD0156 [Xylella fastidiosa Temecula1]
 gi|28056147|gb|AAO28050.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|307579179|gb|ADN63148.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 244

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
               I    E  + S    + VQ I    +  ++D ++QK+ E+G+ AI PV T  +   
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAI---TRGEKMDLIVQKATELGVVAIVPVDTERS-GV 117

Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
             + +RV           ISA EQC    +P +  P  L+ L +  D +   +  D    
Sbjct: 118 RLDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILDPK-- 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           SE+ L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A
Sbjct: 176 SEHRLSTLSRLTPV-EVIIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233

Query: 234 MALVQAICGD 243
           +A++QA  GD
Sbjct: 234 IAVLQAQLGD 243


>gi|307611825|emb|CBX01538.1| hypothetical protein LPW_32251 [Legionella pneumophila 130b]
          Length = 242

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79
           S +   ++  VLRM+ G+ + LFNG + E+ + I  V K   F      +E    S  K 
Sbjct: 21  SPEAGQHVGVVLRMEPGEQLTLFNGDNKEFTASIEMVKKKQVFVRIASVLEVNRESPLKI 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
              Q I    K  R++ ++QKS E+G+  I P+IT   Q           M +     I 
Sbjct: 81  HLAQAIS---KGERMEMVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P +  P  L+  ++    + +++       +       H     P+VA++
Sbjct: 138 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPVQH-----PDVALI 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA  GD
Sbjct: 193 IGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAAGGD 241


>gi|192360419|ref|YP_001980593.1| hypothetical protein CJA_0070 [Cellvibrio japonicus Ueda107]
 gi|190686584|gb|ACE84262.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus
           Ueda107]
          Length = 241

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 120/246 (48%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++ +  L    + +      H+L+ VLRM+ G  ++LFNG  GE+ + I  + K   
Sbjct: 3   IPRIYTNQTLLTGNKVQLEESASHHLSKVLRMQPGRELVLFNGAGGEFAATIDEISKRHV 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                      ++S +Q   +    +  R ++++QK+ E+G+  I P++T  T+      
Sbjct: 63  TASIAAHNPHNRESPLQLELAIGISRGERFEWVLQKATELGVTKITPLMTERTEVKVSGE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                M+R +   ISA EQC    LP +  P  +   LK  D   + V       +  + 
Sbjct: 123 RQEKIMERWQHILISACEQCQRNLLPQLSAPVPITDWLKTVDAELRFVLHHRDSQTLPAD 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +K H+       A+LIGPEGG   +E        F   L+LGPR+LR++TA +AA+++VQ
Sbjct: 183 KKPHS------AALLIGPEGGLSDDEIALAKQQEFAA-LTLGPRVLRTETAPIAAISVVQ 235

Query: 239 AICGDW 244
            + GD+
Sbjct: 236 YLWGDF 241


>gi|297544383|ref|YP_003676685.1| hypothetical protein Tmath_0939 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842158|gb|ADH60674.1| protein of unknown function DUF558 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 245

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           +++ FVD     +      G   H++ +VLR+K+GD I++ +G   E+ + I  V K+ +
Sbjct: 1   MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDG-STEYQTSIYGVEKNRV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
              +E + +S T+ S    +F  + K+++++ +IQK  E+G+    P+ITRY+    +N+
Sbjct: 60  ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119

Query: 121 HYN--MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           + N  ++R    +  A +Q    +LP I  P + E  LK  +     +   E   +    
Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL-SLGPRILRSDTAAVAAMALV 237
           E L  + +I  VAI IGPEGG+  EE +   +L +   L SLGPRILR++TAA++  ++V
Sbjct: 180 EVLDGVKNIKKVAIFIGPEGGFSEEEVDL--ALRYSAKLVSLGPRILRTETAAISVCSIV 237

Query: 238 QAICGD 243
               GD
Sbjct: 238 MYELGD 243


>gi|58426003|gb|AAW75040.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 267

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           L R  V  PL    +     +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK   
Sbjct: 26  LTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRDA 85

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+      
Sbjct: 86  RALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDAA 145

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ L
Sbjct: 146 RTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ--GEHRL 203

Query: 179 EKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             L   + IP ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A +
Sbjct: 204 GTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAAL 260

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 261 QSRFGD 266


>gi|59711043|ref|YP_203819.1| hypothetical protein VF_0436 [Vibrio fischeri ES114]
 gi|59479144|gb|AAW84931.1| predicted protein [Vibrio fischeri ES114]
          Length = 243

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 30/246 (12%)

Query: 15  PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           P  + +QGK   S D  +++  V+RMKEG+++LLF+G   E+ + I+   K    +VE  
Sbjct: 9   PELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGSEFPAVITSASKK-SVEVEIT 67

Query: 73  SR-SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123
            R  ++ +S +      +  + +++++ IQKSVE+G+  I P+I+         +     
Sbjct: 68  ERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNKERFEKK 127

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKL 181
           +D+ +   I+A EQC   T+P I P  +LE     W   C    A+E  G + +L     
Sbjct: 128 LDQWQKIAIAACEQCGRNTVPEIRPIMSLE----EW---C----AEEYDGLKLNLHPRAK 176

Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++I  +P    NV +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 177 YSINTLPEPVTNVRLLIGPEGGLSSDEISMTEQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|21232316|ref|NP_638233.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767551|ref|YP_242313.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188990664|ref|YP_001902674.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. campestris str. B100]
 gi|21114084|gb|AAM42157.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572883|gb|AAY48293.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732424|emb|CAP50618.1| Conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 244

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R +V  PL          +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSYVALPLHSGGDVTLPEESANHLLRVLRLREGDACVLFNGDGSDYHARITVAGKRE 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  ++ S      +  +    +  ++D ++QK+ E+G+ A+ PV    T+     
Sbjct: 62  ARAVVERVEAVSNEPPLAITLLQGIARGEKMDLILQKATELGVTAVVPVNAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 M   R+  +SA EQ     +P + PP++L+   +  D     +  D     E+ 
Sbjct: 122 ARLEKRMAHWRSVIVSACEQSGRARIPSLAPPSSLQDAARASDAQALRLTLDPH--GEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A+     + + IGPEGG+   ++ TL    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-AVQPGQELIVAIGPEGGWSPRDRTTLGEAGF-TGLRLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|323498678|ref|ZP_08103669.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM
           21326]
 gi|323316278|gb|EGA69298.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM
           21326]
          Length = 243

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 115/238 (48%), Gaps = 36/238 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82
           S D   ++  VLRMKEG  +LLF+G   E+ + IS V  KS+  +V E   RS     D+
Sbjct: 21  SDDAAGHIGRVLRMKEGQQVLLFDGSGSEFPATISSVSKKSVEVEVTERIERSAESPLDL 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
                  + +++++ IQKSVE+G+  I P+I+         +     M + +   ISA E
Sbjct: 81  HLGQVVSRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQKRFEKKMAQWQKIAISACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189
           QC   T+P I P   LE    +W            CG E    KL       ++I  +P 
Sbjct: 141 QCGRNTVPEIRPIMQLE----DW------------CGEEYDGLKLNLHPRAKYSINTLPT 184

Query: 190 ----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               V +LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 185 PVERVRLLIGPEGGLSAEEISMTEKYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|84623346|ref|YP_450718.1| hypothetical protein XOO_1689 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|229558004|ref|YP_200425.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84367286|dbj|BAE68444.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 16/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL    +     +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +    E+
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEH 178

Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            L  L   + IP ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A
Sbjct: 179 RLGTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIA 235

Query: 236 LVQAICGD 243
            +Q+  GD
Sbjct: 236 ALQSRFGD 243


>gi|90415442|ref|ZP_01223376.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium
           HTCC2207]
 gi|90332765|gb|EAS47935.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium
           HTCC2207]
          Length = 245

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 18/249 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F D PL        SG    +L+  LRM  G  I LFNG  GE+ + ++   KS 
Sbjct: 2   RIPRIFTDQPLSSGANLALSGSAARHLSSALRMSAGQEITLFNGLGGEFSATLTRATKSQ 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
           +   + +++   +    ++    +  +  R+D+++QK+ E+G+  I P+ +  T+    N
Sbjct: 62  VDVSIGDFRDIDRESPLNLHLAIAVSRGERMDWIVQKATELGVSEITPLFSERTE-VKLN 120

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R+       +  +ISA EQC    +P I P  TL+  L     N + +       S+ 
Sbjct: 121 GERLEKKLRHWQQVSISACEQCQRNLVPSINPALTLDQWLSQDTGNAEQLKLVLHHRSDK 180

Query: 177 SLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           SL +     H P  +  +L+GPEGG    E        F   L+LGPR++R++TA +AA+
Sbjct: 181 SLAQ-----HQPPKSACLLVGPEGGLSDNEISRAMDNGFAA-LTLGPRVMRTETAPLAAI 234

Query: 235 ALVQAICGD 243
           +++Q++ GD
Sbjct: 235 SIMQSVWGD 243


>gi|229358034|ref|YP_001914280.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 244

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 16/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL    +     +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +    E+
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEH 178

Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            L  L   + IP ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A
Sbjct: 179 RLGTL--ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIA 235

Query: 236 LVQAICGD 243
            +Q+  GD
Sbjct: 236 ALQSRFGD 243


>gi|326389861|ref|ZP_08211425.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994129|gb|EGD52557.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 245

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 18/231 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K   I F +E +  S T+ +  
Sbjct: 19  EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESALE 76

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             +F  + K+++++ +IQK  E+G+    PV+TRYT       N +  + R R  +  A 
Sbjct: 77  ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADE-TCGSENSLEKLHAIAHIPNVAI 192
           +Q     +P I  P + E  +   D    C I +  E T   +  LEK   +  I    I
Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLKEVLEKAKGVKKI---GI 193

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            IGPEGG+  EE E L     + P+SLGPRILR++TAA+A  ++V    GD
Sbjct: 194 FIGPEGGFSQEEIE-LALNKSIKPVSLGPRILRTETAAIAVCSIVMYELGD 243


>gi|182680714|ref|YP_001828874.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M23]
 gi|182630824|gb|ACB91600.1| protein of unknown function DUF558 [Xylella fastidiosa M23]
          Length = 242

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 20/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+   
Sbjct: 1   MSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRREA 60

Query: 65  ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
              I    E  + S    + VQ I    +  ++D ++QK+ E+G+ AI PV T  +    
Sbjct: 61  WARIEGVSEVCNESPLAITLVQAI---TRGEKMDLIVQKATELGVVAIVPVDTERS-GVR 116

Query: 122 YNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            + +RV           ISA EQC    +P +  P  L+ L +  D +   +  D    S
Sbjct: 117 LDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILDPK--S 174

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E+ L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A+
Sbjct: 175 EHRLSTLSRLTPV-EVIIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTAI 232

Query: 235 ALVQAICGD 243
           A++QA  GD
Sbjct: 233 AVLQAQLGD 241


>gi|148361269|ref|YP_001252476.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby]
 gi|148283042|gb|ABQ57130.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby]
          Length = 242

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79
           S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F      +E    S  K 
Sbjct: 21  SPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTASIERVKKKQVFVRIASVLEVNRESPLKI 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
              Q I    K  R++ ++QKS E+G+  I P+IT   Q           M +     I 
Sbjct: 81  HLAQAIS---KGERMEVVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P +  P  L+  ++    + +++       +             P+VA++
Sbjct: 138 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+ S+E+ TL S     PLSLGPR+LR++TAA+ A++++QA  GD
Sbjct: 193 IGPEGGF-SDEEITLTSGYGFLPLSLGPRVLRTETAAITALSVLQAAGGD 241


>gi|167040699|ref|YP_001663684.1| 16S ribosomal RNA methyltransferase RsmE [Thermoanaerobacter sp.
           X514]
 gi|300914740|ref|ZP_07132056.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561]
 gi|307724026|ref|YP_003903777.1| hypothetical protein Thet_0859 [Thermoanaerobacter sp. X513]
 gi|166854939|gb|ABY93348.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X514]
 gi|300889675|gb|EFK84821.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561]
 gi|307581087|gb|ADN54486.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X513]
          Length = 245

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 132/246 (53%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           +++ FVD     +      G   H++ +VLR+K+GD I++ +G   E+ + I  V K+ +
Sbjct: 1   MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDG-STEYQTSIYGVEKNRV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
              +E + +S T+ S    +F  + K+++++ +IQK  E+G+    P+ITRY+    +N+
Sbjct: 60  ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119

Query: 121 HYN--MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           + N  ++R    +  A +Q    +LP I  P + E  LK  +     +   E   +    
Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL-SLGPRILRSDTAAVAAMALV 237
           E L  + +I  VAI +GPEGG+  EE +   +L +   L SLGPRILR++TAA++  ++V
Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDL--ALRYSAKLVSLGPRILRTETAAISVCSIV 237

Query: 238 QAICGD 243
               GD
Sbjct: 238 MYELGD 243


>gi|54295775|ref|YP_128190.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens]
 gi|53755607|emb|CAH17109.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens]
          Length = 244

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79
           S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F      +E    S  K 
Sbjct: 23  SPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIEMVKKKQVFVRIASVLEVNRESPLKI 82

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
              Q I    K  R++ ++QKS E+G+  I P+IT   Q           M +     I 
Sbjct: 83  HLAQAIS---KGERMEMVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 139

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P +  P  L+  ++    + +++       +             P+VA++
Sbjct: 140 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 194

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA  GD
Sbjct: 195 IGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAAGGD 243


>gi|209694142|ref|YP_002262070.1| 16S ribosomal RNA methyltransferase RsmE [Aliivibrio salmonicida
           LFI1238]
 gi|208008093|emb|CAQ78234.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 18/240 (7%)

Query: 15  PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           P  + +QGK   S D  +++  V+RMKEG+ +LLF+G   E+ + I+   K    +VE  
Sbjct: 9   PELLPSQGKVNLSDDAANHVGRVMRMKEGEAVLLFDGSGAEFPAVITSSSKK-SVEVEIS 67

Query: 73  SR-SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123
            R   + +S +      +  + +++++ IQKSVE+G+  I P+I+         +     
Sbjct: 68  ERIDHSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNKERFEKK 127

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           +D+     I+A EQC   T+P I P  +LE          ++        S N+L +   
Sbjct: 128 LDQWHKIAIAACEQCGRNTIPEIRPIMSLEEWCAEEYEGLKLNLHPRAKYSINTLPE--- 184

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              + NV +LIGPEGG  SEE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 185 --PVTNVRLLIGPEGGLSSEEITMTEQYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|164685878|ref|ZP_01945479.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165918716|ref|ZP_02218802.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|164601398|gb|EAX33970.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165917544|gb|EDR36148.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 244

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 20/247 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ +  K 
Sbjct: 5   RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64

Query: 65  IRFKVEYQSRSQTKQSDV----QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119
           +   ++ +   +T+ S      Q IF   ++ ++DY IQK+VE+G+  I P+IT  T   
Sbjct: 65  VEITIDSKEAGRTESSLFIELGQGIF---RSEKMDYAIQKAVELGVNRIVPLITERTSTK 121

Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSEN 176
                +   +   IS  EQ     +P +    +L   L        +V     C   ++N
Sbjct: 122 PKTQKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQN 176

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           SL      +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L
Sbjct: 177 SLADFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSL 233

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 234 IQAYFGD 240


>gi|212217753|ref|YP_002304540.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii
           CbuK_Q154]
 gi|212012015|gb|ACJ19395.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
          Length = 270

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 20/247 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ +  K 
Sbjct: 31  RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 90

Query: 65  IRFKVEYQSRSQTKQSDV----QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119
           +   ++ +   +T+ S      Q IF   ++ ++DY IQK+VE+G+  I P+IT  T   
Sbjct: 91  VEITIDSKEAGRTESSLFIELGQGIF---RSEKMDYAIQKAVELGVNRIVPLITERTSTK 147

Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSEN 176
                +   +   IS  EQ     +P +    +L   L        +V     C   ++N
Sbjct: 148 PKTQKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQN 202

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           SL      +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L
Sbjct: 203 SLADFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSL 259

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 260 IQAYFGD 266


>gi|161831038|ref|YP_001597773.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA
           331]
 gi|212211957|ref|YP_002302893.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii
           CbuG_Q212]
 gi|161762905|gb|ABX78547.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
 gi|212010367|gb|ACJ17748.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
          Length = 244

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 14/244 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ +  K 
Sbjct: 5   RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN--TH 121
           +   ++ +   +T+ S    +   I ++ ++DY IQK+VE+G+  I P+IT  T      
Sbjct: 65  VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLE 179
             +   +   IS  EQ     +P +    +L   L        +V     C   ++NSL 
Sbjct: 125 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQNSLA 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L+QA
Sbjct: 180 DFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSLIQA 236

Query: 240 ICGD 243
             GD
Sbjct: 237 YFGD 240


>gi|21243796|ref|NP_643378.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109388|gb|AAM37914.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R +VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLDPQ--GEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A +   ++ + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-ASSIQQHIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|254787838|ref|YP_003075267.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901]
 gi|237684009|gb|ACR11273.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901]
          Length = 241

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 15/223 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           H+L  VLRM+ G  ++LFNG  GE+ + I S   K+    +      + +   V  +   
Sbjct: 26  HHLLKVLRMETGRELILFNGLGGEYRATITSATKKAATVTISEHDPVERESPLVTELAVG 85

Query: 89  I-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDIL 141
           I + +R D+++QK+ E+G+  I P+ +  ++           + + +   I A EQC   
Sbjct: 86  ISRGDRFDWVLQKATELGISRIVPLFSERSEVKLSGERLEKRLSQWQKVVIGACEQCQRN 145

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           TLP +  P ++E  +   D  C + F         S   L  +A   +VA+L+GPEGG  
Sbjct: 146 TLPELTAPQSVENYVT--DSLCDLRFVLH----HRSTHHLSQLAAPASVALLVGPEGGLS 199

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             E +   +  F +PL+LGPR+LR++TA + A+++VQA  GD+
Sbjct: 200 DAEIQLAENAGF-SPLALGPRVLRTETAPLVALSVVQATWGDF 241


>gi|330886230|gb|EGH20131.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 239

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+G I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +   +  F     LGPR+LR++TA   A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAA-RLGPRVLRTETAPAVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|71275479|ref|ZP_00651765.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon]
 gi|71900654|ref|ZP_00682779.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
 gi|170729396|ref|YP_001774829.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M12]
 gi|71163779|gb|EAO13495.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon]
 gi|71729589|gb|EAO31695.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
 gi|167964189|gb|ACA11199.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 244

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
               I    E  + S    + VQ I    +  ++D ++QK+ E+G+ AI PV T  +   
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAIA---RGEKMDLIVQKATELGVVAIVPVDTERS-GV 117

Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
             + +RV           +SA EQC    +P +  P  L+ L +  D +   +  D    
Sbjct: 118 RLDSERVAKRLAHWNNVVVSACEQCGRTRVPEVQMPRALQALPEILDPDTLRLILDPK-- 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           SE+ L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A
Sbjct: 176 SEHRLSTLSRLTPV-AVTIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233

Query: 234 MALVQAICGD 243
           +A++QA  GD
Sbjct: 234 IAVLQAQLGD 243


>gi|215919303|ref|NP_820935.2| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA
           493]
 gi|206584188|gb|AAO91449.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
          Length = 260

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 14/244 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ +  K 
Sbjct: 21  RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 80

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN--TH 121
           +   ++ +   +T+ S    +   I ++ ++DY IQK+VE+G+  I P+IT  T      
Sbjct: 81  VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 140

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLE 179
             +   +   IS  EQ     +P +    +L   L        +V     C   ++NSL 
Sbjct: 141 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLV-----CHPNAQNSLA 195

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L+QA
Sbjct: 196 DFKTTSQ--RITLLIGPEGGLSDDEVQRATQSGFQV-LFLGPRILRTETATVTALSLIQA 252

Query: 240 ICGD 243
             GD
Sbjct: 253 YFGD 256


>gi|320116218|ref|YP_004186377.1| hypothetical protein Thebr_1425 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|319929309|gb|ADV79994.1| protein of unknown function DUF558 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 245

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 12/228 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K   I F +E +  S T+ +  
Sbjct: 19  EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESALE 76

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             +F  + K+++++ +IQK  E+G+    PV+TRYT       N +  + R R  +  A 
Sbjct: 77  ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           +Q     +P I  P + E  +   D     +   E   +    E L     +  + I IG
Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLKEVLKKAKGVKKIGIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+  EE E L     + P+SLGPRILR++TAA+A  ++V    GD
Sbjct: 197 PEGGFSQEEIE-LALNKSIKPVSLGPRILRTETAAIAVCSIVMYELGD 243


>gi|220936059|ref|YP_002514958.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997369|gb|ACL73971.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 244

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 15/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIR 66
           RL+++  L +    +     + ++  VLR++ G  ++LFNG+ GE+ + ++   K  S  
Sbjct: 5   RLYLNQSLSVGDTIELDERAHRHVVQVLRLRPGAELVLFNGQGGEYRATLTEAQKRHSSV 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
               +  R       V  +    K +R+DY +QK+ E+G+  I+PV+T+ +Q        
Sbjct: 65  SLTGFDPRDTRPALPVTLVQGISKGDRMDYSLQKATELGVSRIQPVLTQRSQAPGDPRRL 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLE 179
              ++  R   ISA EQC    LP +    + + +L    D    +V       +E  L 
Sbjct: 125 DNRLEHWRGVVISACEQCGRNELPELGGVISFQAWLGSEPDSGLGLVLDPR---AETGLS 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +     V++LIGPEGG    E        F TP+ LGPRILR++TA VAA+A++Q 
Sbjct: 182 GL--VPPEGEVSLLIGPEGGLDEAEILAARHRGF-TPVRLGPRILRTETAGVAALAVIQG 238

Query: 240 ICGD 243
           + GD
Sbjct: 239 LWGD 242


>gi|27364902|ref|NP_760430.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio vulnificus CMCP6]
 gi|37681051|ref|NP_935660.1| hypothetical protein VV2867 [Vibrio vulnificus YJ016]
 gi|320155285|ref|YP_004187664.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus
           MO6-24/O]
 gi|27361047|gb|AAO09957.1| Ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus
           CMCP6]
 gi|37199801|dbj|BAC95631.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319930597|gb|ADV85461.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus
           MO6-24/O]
          Length = 243

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82
           S D   ++  VLRMKEG  +LLF+G   E+ + IS VG KS+  ++ E   RS     D+
Sbjct: 21  SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVGKKSVMVELSERVERSSESPLDL 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
                  +  ++++ IQKSVE+G+  I P+I+         +     + + +   ISA E
Sbjct: 81  HLGQVISRGEKMEFTIQKSVELGVNTITPLISDRCGVKLDEKRFEKKLAQWQKIAISACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC   T+P I P  +LE          ++        S N+L +      +  V +LIGP
Sbjct: 141 QCGRNTIPEIRPIMSLEAWCAEEYDGLKLNLHPRAKYSINTLPE-----PVTKVRLLIGP 195

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG  SEE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 196 EGGLSSEEIDMTQQYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|330951354|gb|EGH51614.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit
           7]
          Length = 239

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
             V+  +S +  ++S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQQESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|54298937|ref|YP_125306.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila
           str. Paris]
 gi|53752722|emb|CAH14157.1| hypothetical protein lpp3004 [Legionella pneumophila str. Paris]
          Length = 244

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79
           S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F      +E    S  K 
Sbjct: 23  SPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFVRIASVLEVNRESPLKI 82

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
              Q I    K  R++ ++QKS E+G+  I P+IT   Q           M +     I 
Sbjct: 83  HLAQAIS---KGERMEVVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 139

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P +  P  L+  ++    + +++       +             P+VA++
Sbjct: 140 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 194

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+ S+E+ TL S     PLSLGPR+LR++TAA+ A++++QA  GD
Sbjct: 195 IGPEGGF-SDEEITLTSGYGFLPLSLGPRVLRTETAAITALSVLQAAGGD 243


>gi|52843130|ref|YP_096929.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52630241|gb|AAU28982.1| hypothetical protein lpg2936 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 244

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79
           S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F      +E    S  K 
Sbjct: 23  SPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIERVKKKQVFVRIASVLEVNRESPLKI 82

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
              Q I    K  R++ ++QKS E+G+  I P+IT   Q           M +     I 
Sbjct: 83  HLAQAIS---KGERMEMVMQKSAELGVACITPLITERCQVKIDKEKMAKKMHQWLNIIIG 139

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P +  P  L+  ++    + +++       +             P+VA++
Sbjct: 140 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 194

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA  GD
Sbjct: 195 IGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAAGGD 243


>gi|254496687|ref|ZP_05109550.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254354115|gb|EET12787.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 242

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 14/227 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S +   ++A VLRM+ G+ + LF G + E+ + I  V K           +  K+S +  
Sbjct: 21  SPEASQHVAVVLRMQIGEQLTLFCGDNREFTATIEAVKKKQVMVTVNAVTAINKESPLAI 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
             +    K  R++ ++QK+VE+G+  I P+I+         +     + + +   I+A E
Sbjct: 81  HLAQAISKGERMELVMQKAVELGVTRITPIISERCVVKLDQERMGKKLHQWQAIVIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q    T+P I+PP TL   L+  + + Q+       G++N  +     +   N+A+LIGP
Sbjct: 141 QSGRNTVPVIHPPLTLARYLQ--EESAQLKLILHPGGNKNWRDYTFTQS---NIALLIGP 195

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG    E  +  +  F  PLSLGPRILR++TAA+ A++++QA+ GD
Sbjct: 196 EGGLSDAEVHSASAQGF-QPLSLGPRILRTETAAITALSVLQAVAGD 241


>gi|296108607|ref|YP_003620308.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650509|gb|ADG26356.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 242

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-----VEYQSRSQTKQ 79
           S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F      +E    S  K 
Sbjct: 21  SPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFVRIASVLEVNRESPLKI 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
              Q I    K  R++ ++QKS E+G+  I P+IT   Q           M +     I 
Sbjct: 81  HLAQAIS---KGERMEVVMQKSAELGVACITPIITERCQVKIDKEKMAKKMHQWLNIIIG 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P +  P  L+  ++    + +++       +             P+VA++
Sbjct: 138 ACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYP-----VQPPDVALI 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+ S+E+ TL S     PLSLGPR+LR++TAA+ A++++QA  GD
Sbjct: 193 IGPEGGF-SDEEITLTSGYGFLPLSLGPRVLRTETAAITALSVLQAAGGD 241


>gi|297568502|ref|YP_003689846.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924417|gb|ADH85227.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 242

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           ++R F+D       +   +G   H+L HVLR+  G+ + LF+G+   + + I ++   + 
Sbjct: 1   MRRFFIDPEAIQGREASLTGSDAHHLQHVLRLTPGERVELFDGRGTVYQAAIDHIEPGLT 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           R  +   S +   +  +    + +K  ++D ++QK  E+G+ ++RP  +++T       +
Sbjct: 61  RLTLLSSSDTPPDRLAIHLGQAMLKGKKMDLVVQKCTELGVRSLRPYTSQHTTTPPPGAE 120

Query: 126 RVRTYTI---SAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGS--ENSLE 179
           ++  +      + +QC+    P  +PP T  E L    D + +++  +E       N  E
Sbjct: 121 KLARWQRIIHESCKQCNQPWPPSCHPPQTFAELLADAADFDLRLICWEEPEAPPLSNIAE 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +L A A   +V +LIGPEGG+  EE +      F+  + LG RILR++TA++  +AL+Q 
Sbjct: 181 QLGAPA---SVLVLIGPEGGFSREEIDLARQAGFIV-IGLGRRILRAETASIVIIALLQY 236

Query: 240 ICGDWY 245
           I  D Y
Sbjct: 237 IFNDLY 242


>gi|289667429|ref|ZP_06488504.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 244

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     +P +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLDPQ--GEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L +     ++ + IGPEGG+   ++  L    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LGTLASSVQ-QHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|307543622|ref|YP_003896101.1| hypothetical protein HELO_1033 [Halomonas elongata DSM 2581]
 gi|307215646|emb|CBV40916.1| K09761 hypothetical protein [Halomonas elongata DSM 2581]
          Length = 248

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 17/222 (7%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++A VLR+  G  +++F+G+  E  + ++  G K +  +VE  +  + +     ++   I
Sbjct: 34  HVARVLRLGPGAPVIIFDGQGNEAEAILTEAGRKQVVARVERVAAGRGESPLAVHLGQAI 93

Query: 90  -KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
            K +R+DY IQK+VE+G+  I P+ T +       +     +   +    SA EQC   T
Sbjct: 94  SKGDRMDYAIQKAVELGVAEITPLYTEHGDVRLKGEREAKKLAHWQAVAASACEQCGRAT 153

Query: 143 LPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           LP +YPP + +++L +  +  C ++      G +   + + A       A+LIGPEGG  
Sbjct: 154 LPPVYPPRSVVDWLAERDEPLCLVLHPGTPGGLDRHDDPVRA-------ALLIGPEGGLS 206

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             E +      F + L+LGPRILR++TA V A++L+Q   GD
Sbjct: 207 HAEVDAAADAGFAS-LTLGPRILRTETAPVVALSLLQNRFGD 247


>gi|256752132|ref|ZP_05492998.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748946|gb|EEU61984.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 245

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 12/228 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K   I F +E +  S T+    
Sbjct: 19  EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESPLE 76

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             +F  + K+++++ +IQK  E+G+    PV+TRYT       N +  + R R  +  A 
Sbjct: 77  ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           +Q     +P I  P + E  +   D     +   E   +    E L     +  + I IG
Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLKEVLKKAKGVKKIGIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+  EE E L     + P+SLGPRILR++TAA+A  ++V    GD
Sbjct: 197 PEGGFSQEEIE-LALNKSIKPVSLGPRILRTETAAIAVCSIVMYELGD 243


>gi|330984681|gb|EGH82784.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009640|gb|EGH89696.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 239

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|294627316|ref|ZP_06705902.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294667456|ref|ZP_06732673.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598398|gb|EFF42549.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292602789|gb|EFF46223.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R +VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLDPQ--GEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A +    + + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-ASSIQQYIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|254796435|ref|YP_003081271.1| hypothetical protein NRI_0035 [Neorickettsia risticii str.
           Illinois]
 gi|254589672|gb|ACT69034.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 232

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 27/242 (11%)

Query: 6   HLKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L RLF++     K T+      + HYL  V+R+++   +++FNG+ GEW++K+      
Sbjct: 2   RLTRLFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEAQVIVFNGRSGEWIAKVDR---- 57

Query: 65  IRFKV-EYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
             F V + Q R QT     D+   F+  K   L   ++++ E+ +  +RP+ +   +N +
Sbjct: 58  -NFLVPDIQIRPQTASYPYDIHLCFAVPKHKALKETVRQATELDVTTLRPIYSSRAENKN 116

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            +++++  + I AA+QC  +++P + PP  L   ++ +  N  +   DET          
Sbjct: 117 KDLEKLELWAIEAAQQCRRMSIPILLPPIALRE-VETYHEN--VFICDETLSDS------ 167

Query: 182 HAIAHIPNVA---ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             I  IP ++   I+IGPEGG+  EE   +        +SLG  ILR  TAA +A+A V+
Sbjct: 168 -VICDIPILSSYTIVIGPEGGFSHEELSLIDKR-----ISLGRTILRCSTAATSAIAQVR 221

Query: 239 AI 240
           ++
Sbjct: 222 SV 223


>gi|78048759|ref|YP_364934.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325925762|ref|ZP_08187135.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118]
 gi|78037189|emb|CAJ24934.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543819|gb|EGD15229.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118]
          Length = 244

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 66  RFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
              +  ++   + +S ++        +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAVPQGLQDAAQASDAHALRLTLDPQ--GEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A +   +V + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-ASSIQQHVVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|160872460|ref|ZP_02062592.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159121259|gb|EDP46597.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 241

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 118/228 (51%), Gaps = 17/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV-EYQSRSQTKQSDV 82
           S +  H+L  VLR++ GD  ++FNG+ GE+ + I   +  + R K+ E+ + ++     +
Sbjct: 21  SQEAAHHLIRVLRLQVGDECIIFNGQAGEFQATIIERIKTTARVKLGEFNAINRESPLQI 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI-------SAA 135
             + + + ++++DY++QK+VE+G+  + P++T ++       DR     +        A 
Sbjct: 81  TLVQAILHSDKMDYLLQKAVELGVTHVIPLLTAHS-TLKLTPDRWEKRYVHWQGVMRGAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ     +P +  P T +  +       +I+          + + LH++     V + IG
Sbjct: 140 EQSGRTRIPILENPMTFDVAMMALKAETRIIL------QPAAKKMLHSLPFCQRVVLCIG 193

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+   E ++   + F   + +GPR+LRS+TA V AM+L+Q + GD
Sbjct: 194 PEGGWSLNELDSAQKMGF-QAMKMGPRVLRSETAGVVAMSLLQGLYGD 240


>gi|188521803|gb|ACD59748.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 227

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 16/227 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE-YQSRSQTKQSDVQY 84
           +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK   R  VE  +  S      +  
Sbjct: 6   ESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRDARALVERVEPLSNESPLRITL 65

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQC 138
           +    +  ++D ++QK+ E+G+ AI PVI   T+       T   +   R+  +SA EQ 
Sbjct: 66  MQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDAARTEKRVAHWRSVVVSACEQS 125

Query: 139 DILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGP 196
               LP +  P  L+   +  D H  ++    +    E+ L  L   + IP  + + IGP
Sbjct: 126 GRARLPSVATPLGLQDAAQASDTHALRLTLDPQ---GEHRLGTL--ASSIPQHIVVAIGP 180

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG+   ++ TL    F + L LGPRILR++TA +AA+A +Q+  GD
Sbjct: 181 EGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAALQSRFGD 226


>gi|289664251|ref|ZP_06485832.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 244

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLIRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     +P +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLDPQ--GEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L +     ++ + IGPEGG+   ++  L    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LGTLASSVQ-QHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|320322008|gb|EFW78104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330886|gb|EFW86860.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330872110|gb|EGH06259.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 239

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|71737741|ref|YP_272747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558294|gb|AAZ37505.1| uncharacterized conserved protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 239

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTEAPLSLGEH-ELPEAQTHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|149191952|ref|ZP_01870183.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1]
 gi|148834219|gb|EDL51225.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1]
          Length = 243

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 28/234 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D   ++  VLRMKEG  +LLF+G   E+ + I+ +GK     V+ Q +  T       
Sbjct: 21  SEDAAGHVGRVLRMKEGQEVLLFDGSGHEFPATITQIGKK-NVDVDIQEKVSTS------ 73

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129
           I SP+         + +++++ IQKSVE+G+  I P+I+         +     + + + 
Sbjct: 74  IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDAKRFEKKLQQWQK 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             ISA EQC   T+P I P  +LE          ++        S N+L +      +  
Sbjct: 134 IAISACEQCGRNTIPEIRPIMSLEQWCAEPSEALKLNLHPRAKYSINTLPE-----PVTK 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E E      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 189 VRLLIGPEGGLSAQEIEMTEQYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|119773713|ref|YP_926453.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella amazonensis
           SB2B]
 gi|119766213|gb|ABL98783.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 243

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 36/257 (14%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            + R+F    L    +     D + ++  VLRM EG+ I +FNG   ++L+ I   G KS
Sbjct: 2   RIPRIFQPLDLSPSAEFALDEDGFAHVGRVLRMGEGEQIRVFNGDGKDYLADIVSAGKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     +Q++     ++   I + +R+D+ +QKSVE+G+  I P+ +         
Sbjct: 62  LTVKVVAVEDNQSESPLHLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P + P   L                 E C  + S
Sbjct: 122 ERLDKKIAQWQKIVISACEQCGRATVPVVRPVMDLA----------------EWCAEQTS 165

Query: 178 LEKL-------HAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             KL       H I  +    P V +LIGPEGG  +EE     +  F T + LGPR+LR+
Sbjct: 166 ALKLNLHPRADHGINGLVLDNPRVRLLIGPEGGLSAEEIAMTETHKF-TEVLLGPRVLRT 224

Query: 227 DTAAVAAMALVQAICGD 243
           +TAA+ A+  +Q   GD
Sbjct: 225 ETAALTAITALQMKFGD 241


>gi|302188983|ref|ZP_07265656.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae 642]
          Length = 239

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+       +   V  I       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLNESFAGQVESVLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLTEWIKQTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|119358138|ref|YP_912782.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355487|gb|ABL66358.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides DSM
           266]
          Length = 248

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 17/230 (7%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS--Q 76
           +T+    GD++H+L  V+R K GD +LL +G    +  +I  +GK  R   +  +RS   
Sbjct: 15  RTEIALEGDEFHHLVRVVRKKPGDEVLLTDGNGSRFHVRIREIGKQ-RLTADILTRSIYP 73

Query: 77  TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
              + V    S +KT +R D  ++K+ E+G+ AI P+IT  T      +     +DR + 
Sbjct: 74  PSPTAVTVAMSLLKTPHRFDLFLEKATELGVTAIIPMITARTIALPPKERIQGKLDRWQG 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             +SA+ Q   L LP I+ P +   +L   +++ +I+ A E+   +N L          N
Sbjct: 134 IVLSASRQSKRLFLPRIHEPLSFAKVLDRDEYDLRIL-AHESS-EQNPLIDFAE----KN 187

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V  +IGPEGG+ SEE     S   V   SLG  ILR++TA V A+A+V+A
Sbjct: 188 VLFMIGPEGGFTSEEVSRARSCG-VLESSLGHTILRAETAGVFAVAMVRA 236


>gi|262368644|ref|ZP_06061973.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316322|gb|EEY97360.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 238

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 21/242 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           + R F++  L +    + +   +H+   VLR + G+   LFNG+ GE+   +S V  KS 
Sbjct: 1   MPRFFMEAELNVDHTVELTETVFHHWVKVLRAQVGETATLFNGQGGEYEVTLSDVAKKSA 60

Query: 66  RFKVEY---QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTH 121
             +V      +R+   ++ +  + S  K +R+DY+IQK+VE+G+  I+ + + R      
Sbjct: 61  SVQVTAFNPTNRTPAFKALLGQVMS--KGDRMDYVIQKAVELGVSEIQLLTSERCEMRLK 118

Query: 122 YNMDRVRT-----YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           Y+ D+ +        I+A EQC +  +P I  P +LE  L +     ++V A        
Sbjct: 119 YDRDQKKIDHWQGIAIAACEQCGMNLVPKILAPVSLEKWLASELPATRLVLAPNK----- 173

Query: 177 SLEKLHAIAH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             EKL  +AH  PN+A+LIGPEGG    E  T +   F++   +G R+LR++TA V A++
Sbjct: 174 --EKLDVLAHATPNIALLIGPEGGLSEAEIITANEHGFIS-WCIGERVLRTETAPVVALS 230

Query: 236 LV 237
           ++
Sbjct: 231 IL 232


>gi|78486164|ref|YP_392089.1| hypothetical protein Tcr_1823 [Thiomicrospira crunogena XCL-2]
 gi|78364450|gb|ABB42415.1| Conserved hypothetical protein with DUF 558 [Thiomicrospira
           crunogena XCL-2]
          Length = 245

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 16/227 (7%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86
           Q HY   VLR+K+   I +F+GK  +  + +   G+        +  S   +S +Q +  
Sbjct: 24  QAHYALTVLRLKDQRPIEVFDGKGHQAHATLQVTGRKTADVFIERCESVNTESPLQTVLL 83

Query: 87  -SPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTHYNMDRVRT----YTISAAEQCD 139
               K +R+DY IQKSVE+G+ AI+P+ T     + T   +D+ RT      I+A EQ +
Sbjct: 84  QGISKGDRMDYTIQKSVELGVTAIQPLFTERCDVKLTGDRLDKKRTQWQDIAINACEQSN 143

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              +P + PP +    L        +V +     +E++L+ L +     +V +LIGPEGG
Sbjct: 144 RNVVPAVLPPLSYSDWLSTQTLVSGLVLSPT---AEHTLQTLPSSLSEQSVHLLIGPEGG 200

Query: 200 YHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              EE  + T   L   TP+ LGPRILR++TA V  ++ +Q + GD+
Sbjct: 201 LTDEEVLQGTQKGL---TPIQLGPRILRTETAGVVVLSALQTLWGDF 244


>gi|282891340|ref|ZP_06299842.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498837|gb|EFB41154.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 241

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66
           +R ++  P    ++    G ++H+L HV+R + G+++ + NG+ G   + + ++ K    
Sbjct: 4   ERYYIPQPFQKGSELIIEGQEFHHLVHVMRTQVGESVEVVNGEGGFGHAVLEHLEKKRAI 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR---YTQNTHYN 123
           F+VE   +      +V    +  K NRLD++++K  E+GM       ++     Q T + 
Sbjct: 64  FRVEETVQHPKPAFEVILAQAIPKINRLDFILEKGTELGMTQFWLFPSQRGERKQLTEHQ 123

Query: 124 MDRVRTYTISAAEQCDILTLPFIY--PPTTLEFLLKNWDHNCQI--VFADETCGSENSLE 179
           ++R+R  +I+A +QC    LP I   PP      L+ W+ N  +  +F +    + + +E
Sbjct: 124 IERMRALSIAAMKQCGSFYLPTILMKPP------LEKWERNLPLPALFGNVQPDAPSCVE 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           KL        V   +GPE G+  EE++TL +L  V  + L P ILR+DTAA+AA+  +
Sbjct: 178 KLKQERFQNGVIFFVGPESGFSYEEEKTLQALD-VEGVKLHPHILRTDTAAIAALCAI 234


>gi|241668207|ref|ZP_04755785.1| 16S rRNA m3U1498 methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876742|ref|ZP_05249452.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842763|gb|EET21177.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 241

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 16/231 (6%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQT 77
           T+   SG+ Y+Y  +VLR+K+ D I LFN  DG ++ ++I  +  KSI  +V  +     
Sbjct: 16  TELSISGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKTQIIDINNKSILLEVIEKKEIHN 75

Query: 78  KQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTY 130
           +   +  I+   IK    ++++QK+ E+G+  I P+IT YT +          ++R    
Sbjct: 76  ENKYIVNIYQAIIKNENFEFIVQKATELGVNNIYPIITEYTNHKFDKKGFDKKLERWNKI 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
            I+AAEQC  + +P I+ P  +  + L N   N  +     T  +  +L K H       
Sbjct: 136 AIAAAEQCGRVFIPKIHYPIEINSIHLSNSHINIALCPYSNTPENFENLIKTH-----DK 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             I IGPEGG+ ++E E   +  F T ++LG RIL+++TA +  +A++  +
Sbjct: 191 FNIFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPINILAIINFV 240


>gi|254230223|ref|ZP_04923615.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262393236|ref|YP_003285090.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25]
 gi|151937255|gb|EDN56121.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262336830|gb|ACY50625.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25]
          Length = 243

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 26/233 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRMKEG ++LLF+G   E+ + IS V K     +I  +VE    S    
Sbjct: 21  SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKKTVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130
              Q I    + +++++ IQKSVE+G+  I P+I   ++     +D+ R           
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 134

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            ISA EQC    +P I P  +LE   K      ++        S N+L        +  V
Sbjct: 135 AISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRANYSINTLP-----TPVEKV 189

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +LIGPEGG  SEE E      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 190 RLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|82701513|ref|YP_411079.1| hypothetical protein Nmul_A0379 [Nitrosospira multiformis ATCC
           25196]
 gi|82409578|gb|ABB73687.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 255

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 27/236 (11%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSP 88
           H+ A VLR++ GD ++LFNG  GE+   I    K  +   VE   + + ++S +  + + 
Sbjct: 26  HHAARVLRLEAGDEVVLFNGDGGEFTCVILRASKQGVDVVVERHVQVE-RESPLTILLAQ 84

Query: 89  --IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
                 ++D+++QK+VE+G+  I+P+IT+ +      +     +  ++   ISA EQC  
Sbjct: 85  AVCMGEKMDWIVQKAVELGVTRIQPLITKQSVVRLGGERGEKRVSHLQKVVISACEQCGR 144

Query: 141 LTLPFIYPPTTLEFLLKNW---DHNCQIVFAD----ETCG-----SENSLEKLHAIAHIP 188
             +P + P  TL    +NW       + + +D    + C      +   L      ++I 
Sbjct: 145 NHVPEVLPLATL----RNWLGRQTEARRMSSDSLSPDACFMLSPFATKGLRDFKHSSNIG 200

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++ +L+GPEGG+  +E+       F+ PL LG RILR+++AA+AA+  +QA+ GD+
Sbjct: 201 SIILLVGPEGGFTQDEEAAAMVAGFI-PLRLGHRILRTESAALAAVGAMQALWGDY 255


>gi|261250170|ref|ZP_05942746.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis
           CIP 102891]
 gi|260939286|gb|EEX95272.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis
           CIP 102891]
          Length = 258

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 48/244 (19%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRMKEG  +LLF+G   E+ ++I+ V K     SI  +VE  S S    
Sbjct: 36  SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAEIASVSKKNVEVSIIQRVERSSESPLDL 95

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130
              Q +    + +++++ IQKSVE+G+  I P+I   ++     +D+ R           
Sbjct: 96  HLGQVVS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 149

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HA 183
            ISA EQC   T+P I P   LE                E CG E    KL       ++
Sbjct: 150 AISACEQCGRNTVPEIRPIMQLE----------------EWCGEEYDGLKLNLHPRAKYS 193

Query: 184 IAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           I  +P     V +LIGPEGG  +EE     +  F   L LGPR+LR++TAA+ A+  +Q 
Sbjct: 194 INTLPTPVEKVRLLIGPEGGLSAEEIGMTENYKFEETL-LGPRVLRTETAALTAITALQV 252

Query: 240 ICGD 243
             GD
Sbjct: 253 RFGD 256


>gi|289578110|ref|YP_003476737.1| hypothetical protein Thit_0897 [Thermoanaerobacter italicus Ab9]
 gi|289527823|gb|ADD02175.1| protein of unknown function DUF558 [Thermoanaerobacter italicus
           Ab9]
          Length = 245

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 131/246 (53%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           +++ FVD     +      G   H++ +VLR+K+GD I++ +G   E+ + I  V K+ +
Sbjct: 1   MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDG-STEYQTSIYGVEKNRV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
              +E + +S T+ S    +F  + K+++++ +IQK  E+G+    P+ITRY+    +N+
Sbjct: 60  ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119

Query: 121 HYN--MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           + N  ++R    +  A +Q    +LP I  P +    LK  +     +   E   +    
Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFGEALKRIEEFDLCIIPYEKEKTLKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL-SLGPRILRSDTAAVAAMALV 237
           E L  + +I  VAI +GPEGG+  EE +   +L +   L SLGPRILR++TAA++  ++V
Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDL--ALRYSAKLVSLGPRILRTETAAISVCSIV 237

Query: 238 QAICGD 243
               GD
Sbjct: 238 MYELGD 243


>gi|330899324|gb|EGH30743.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 239

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|330942525|gb|EGH45109.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 239

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|66043720|ref|YP_233561.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254427|gb|AAY35523.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330971683|gb|EGH71749.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 239

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 19/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVTQAQDAGFHAA-RLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|71280059|ref|YP_267997.1| 16S ribosomal RNA methyltransferase RsmE [Colwellia psychrerythraea
           34H]
 gi|71145799|gb|AAZ26272.1| conserved hypothetical protein TIGR00046 [Colwellia psychrerythraea
           34H]
          Length = 244

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 29/253 (11%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
           R+F      +      S D + ++  VLR+KEGD I LFNG++  ++ + +  V  KS  
Sbjct: 5   RIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSAD 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
            KV  Q  + ++     ++   I + +R+D+ +QKSVE+G+  I P+ T        N +
Sbjct: 65  VKVTSQEENNSESPLNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERC-GVKLNAE 123

Query: 126 RV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           R+       +   ISA EQ    ++P +  P     LL +W          ET   + +L
Sbjct: 124 RLEKKRQQWQKIVISACEQSGRASVPIVAEP----MLLADW-------LKQETSALKINL 172

Query: 179 --EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             +  H+I  +P     V +LIGPEGG   EE    +   F   L LGPR+LR++TAA+ 
Sbjct: 173 HPKAQHSIMSLPMENTRVRLLIGPEGGLSDEEITQANDSDFHDVL-LGPRVLRTETAALT 231

Query: 233 AMALVQAICGDWY 245
           A+  +Q   GD +
Sbjct: 232 AITALQCRFGDLH 244


>gi|330721278|gb|EGG99366.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC2047]
          Length = 241

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 22/248 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R+F+D PL    Q +   +  HYL  VLR+     + +FNG+ GE+ ++I    K ++
Sbjct: 3   IPRIFIDLPLNEHQQVELPRETSHYLNRVLRLPVDAQLRVFNGQGGEYQAQICAANKNAV 62

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
              +  + +   +    +    +  K +R+D+++QK+ E+G   I+ +   Y++ T   +
Sbjct: 63  SLAIGAFSAEDNSSPLHIHLGIALSKGDRMDFVVQKATELG---IKEISLLYSERTEVKL 119

Query: 125 DRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
              R            ISA EQC    +P I+ PT L   L+      +++      G++
Sbjct: 120 KGEREEKRLQHWQKVAISACEQCASNHVPTIHAPTPLNQWLEERHETVKLIMQP---GTD 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              ++     +   VA+L+GPEGG+   E    +   F   LSLGPRILR++TA + A++
Sbjct: 177 QPFKQ----DNPGKVALLVGPEGGFSESEVNAANQAGF-NNLSLGPRILRTETAPLVAIS 231

Query: 236 LVQAICGD 243
           ++Q   GD
Sbjct: 232 ILQHHWGD 239


>gi|330446905|ref|ZP_08310556.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491096|dbj|GAA05053.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 243

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 30/246 (12%)

Query: 15  PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           P  + +QGK   S D  +++  V+RM+ G  +L+F+G D E+ + I+   K    +VE Q
Sbjct: 9   PESLPSQGKVMLSDDAANHVGRVMRMQAGQELLMFDGSDAEFPAVITSASKK-SVEVEIQ 67

Query: 73  SRSQ-TKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYN 123
           SR + + +S +      +  + +++++ IQKSVE+G+  I P+I+         +     
Sbjct: 68  SRVEHSVESPLNIHLGQVISRGDKMEFTIQKSVELGVSTITPLISERCGVKLNAERFEKK 127

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKL 181
           +D+ +   I+A EQC    +P I P   LE     W   C    A+E  G + +L     
Sbjct: 128 LDQWQKIAIAACEQCGRNVVPTIRPVMKLE----QW---C----AEEYDGLKLNLHPRAK 176

Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++I  +P    NV +LIGPEGG  +EE        F   L LGPR+LR++T A+ A+  +
Sbjct: 177 YSINTLPTPVTNVRLLIGPEGGLSAEEIGMTEEYKFDEIL-LGPRVLRTETTAMTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|254482677|ref|ZP_05095915.1| conserved hypothetical protein TIGR00046 [marine gamma
           proteobacterium HTCC2148]
 gi|214037036|gb|EEB77705.1| conserved hypothetical protein TIGR00046 [marine gamma
           proteobacterium HTCC2148]
          Length = 243

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 29/229 (12%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQYIFS 87
            +LA  LRM+E   ++LF+G+ GE+ + I+ VGK     +  Q      +S   +    S
Sbjct: 26  QHLARALRMQEAGQLILFDGRGGEYPATITSVGKKCVSVLTGQRHDIEVESPLAIHLGIS 85

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCDI 140
             +  R+D++IQK+ E+G+  + P++T  T+      DR        +   ISA EQC  
Sbjct: 86  ISRGERMDWVIQKATELGVTHVSPLLTERTE-VKLKADRAEKKRQHWQQIAISACEQCGR 144

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGG 199
             LP I P T L   L +     ++V         +  E L A +  P ++ +LIGPEGG
Sbjct: 145 NRLPVINPLTLLPKWLNDSQAELKLVL-------HHRAENLSAQSTPPRSIDLLIGPEGG 197

Query: 200 Y-----HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                 H  E+   H+      L LG R+LR++TA +AA++++QA  GD
Sbjct: 198 LSPDEIHLAEQRAFHA------LRLGDRVLRTETAPLAALSILQARWGD 240


>gi|208779920|ref|ZP_03247264.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|208744375|gb|EDZ90675.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 242

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 14/225 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IKT   + +IQK+ E+G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ + A   N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSSA---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  +
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFV 240


>gi|304313284|ref|YP_003812882.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1]
 gi|301799017|emb|CBL47260.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1]
          Length = 248

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R+F + PL   T+   +    H++  VLRMK GD +LLFNG  GE+  +I   GK  +
Sbjct: 3   IPRIFQEIPLLEGTKVTLTESGSHHVTQVLRMKPGDQVLLFNGTGGEYFGEIEATGKRGV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              + Y +          ++   I K  R DY IQK+VE+G+  I P+ +R  +      
Sbjct: 63  EVLLTYFNEVDRASPLSVHLGQVIGKGERFDYAIQKAVELGVTEITPLFSRRCEVKLNGP 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + + +   ++A EQ  +  +P I+ P      L  W    Q   A     +E   
Sbjct: 123 RLDKKLQQWKHLAVAACEQSGLNIIPQIHAPVA----LAEWAETVQ-ADARWILHTEGEP 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     ++A  +GPEGG+   E  ++    F   +S+GPRI R++TA V  ++L+Q
Sbjct: 178 HNPFTQQAPQSLAFAVGPEGGFEDTEVSSVRERGFDC-VSMGPRIWRTETAPVVMLSLLQ 236

Query: 239 AICGD 243
              GD
Sbjct: 237 YHWGD 241


>gi|56750741|ref|YP_171442.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus
           PCC 6301]
 gi|81299617|ref|YP_399825.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus
           PCC 7942]
 gi|56685700|dbj|BAD78922.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168498|gb|ABB56838.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 243

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 117/246 (47%), Gaps = 20/246 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L+RL++        +   + DQ HYL  VLR+K GD   + +G+ G W +++    +  
Sbjct: 4   ELRRLWLPPEQLQGDRWSLTADQRHYLQRVLRLKPGDRCAVIDGQGGLWTAELG--DRDQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYN 123
            F V         Q  +  I S +     D +I+++ E+G+  I+PVI+  +Q       
Sbjct: 62  LFPVGAVPVLPPAQPRLTLIQS-LPKQGFDEVIRQATELGVTTIQPVISDRSQVRPEAQK 120

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---TCGSENSLEK 180
            DR R   I A+EQ + L LP + P       ++ W      + AD     C +  SL  
Sbjct: 121 TDRWRKIAIEASEQSERLYLPQLEP-------IRLWSEAIAQIPADSLRCICLARRSLPN 173

Query: 181 ----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L A     ++AI IGPEGG+   E E   ++ + TP+SLG  ILR+ TA + A++L
Sbjct: 174 LLPWLQAQPAWTDLAIAIGPEGGWSDAEIEQAIAVGW-TPVSLGSSILRAVTAPIVALSL 232

Query: 237 VQAICG 242
            QA+  
Sbjct: 233 AQAVAA 238


>gi|319787981|ref|YP_004147456.1| hypothetical protein Psesu_2392 [Pseudoxanthomonas suwonensis 11-1]
 gi|317466493|gb|ADV28225.1| protein of unknown function DUF558 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 243

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V+ PL   +         ++L  VLR++EG++ +LFNG   ++ ++++ V K  
Sbjct: 2   RLTRCHVELPLQPGSTITLPEHAANHLVRVLRLREGESCVLFNGDGHDYAARLASVTKRE 61

Query: 66  RFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                  + +   +S ++ +      +  ++D ++QK+ E+G+ AI PV    T+    +
Sbjct: 62  VSAEVLSATAVDNESPLRIVLLQGIARGEKMDLILQKATELGVAAIVPVNGERTE-VRLD 120

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R        R+   SA EQ     +P + PP +LE        +   +  D     E+
Sbjct: 121 AERAQKRLAHWRSVVESACEQSGRARVPEVQPPASLETAAATLPGDALRLLLDPQ--GEH 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L  +   A    V + IGPEGG+   +++ L +  F + L LGPR+LR++TA +AA+A 
Sbjct: 179 RLASMQPDAS--TVVVAIGPEGGWSPRDRQALQAAGF-SGLRLGPRVLRTETAGLAAIAA 235

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 236 LQARFGD 242


>gi|167627639|ref|YP_001678139.1| 16S ribosomal RNA methyltransferase RsmE [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597640|gb|ABZ87638.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 241

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 16/231 (6%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQT 77
           T+   +G+ Y+Y  +VLR+K+ D I LFN  DG ++ ++I  +  K+I  +V  +     
Sbjct: 16  TKLSITGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKAQIIDINNKNILLEVIEKKEIHN 75

Query: 78  KQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTY 130
           +   +  I+   IK    +++IQK+ E+G+  I P+IT YT +          ++R    
Sbjct: 76  ENKYIVNIYQAIIKNENFEFIIQKATELGVNNIYPIITEYTNHKFDKKGFDKKLERWNKI 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN- 189
            I+AAEQC  + +P I+ P  +     N  H          C   N+ E    +    + 
Sbjct: 136 AIAAAEQCGRVFIPKIHNPIEI-----NSIHLSDSYMNIALCPYSNTPENFENLIKTHDK 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             I IGPEGG+ ++E E   +  F T ++LG RIL+++TA V+ +A++  +
Sbjct: 191 FNIFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPVSILAIINFV 240


>gi|288939950|ref|YP_003442190.1| hypothetical protein Alvin_0191 [Allochromatium vinosum DSM 180]
 gi|288895322|gb|ADC61158.1| protein of unknown function DUF558 [Allochromatium vinosum DSM 180]
          Length = 248

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 17/250 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L RL VD  L    +      Q  +   VLR++    ++LFNG   ++ + +   G+  
Sbjct: 2   RLTRLHVDLDLRPGAEIDLPSAQARHAVQVLRLERDAPLVLFNGDGHDYSACLVEPGRD- 60

Query: 66  RFKVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           R +V  +SR   +   + D+       K  R+D+ IQK+VE+G+  I P+ TR  Q    
Sbjct: 61  RVRVLVESRGDPELESRLDIHLALGISKGERMDFAIQKAVELGVTRITPLFTRRAQVRLD 120

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGS 174
                  ++  +   ++A EQ     LP + P   LE  L+  + D     +  D    +
Sbjct: 121 GARLDKRLEHWQGVVVAACEQSGRRRLPTLEPAGGLEAWLETAHGDGFAGGLLLDPL--A 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E +L  L A      + +LIGPEGG    E+E      F   + LGPRILR++TA +AA+
Sbjct: 179 ERALPALPAPES--GLTLLIGPEGGLDPREREAARRHGFQG-VRLGPRILRTETAPLAAI 235

Query: 235 ALVQAICGDW 244
           A++QA+ GD+
Sbjct: 236 AVIQALWGDF 245


>gi|205374146|ref|ZP_03226946.1| 16S rRNA m3U1498 methyltransferase [Bacillus coahuilensis m4-4]
          Length = 248

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQS 80
           +  GD +H++  V+RMKEGD+ L     +   + KI  +         VE++  S     
Sbjct: 15  RVKGDDFHHMIRVMRMKEGDSFLSVFQDNKSAICKIEEISNDSLTASVVEWELNSTEMPV 74

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISA 134
            +  +    K ++L+ +IQK  E+G        A R ++    +  H  ++R       A
Sbjct: 75  RITIVSGLPKGDKLESIIQKGTELGATEFIPFKATRSIVKWDDKKAHKKIERFEKIAKEA 134

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSL--EKLHAIAHIPNV 190
           AEQ    T+PFI  P TL+ +L+    N    + F +E    E+S   E+L  + +  ++
Sbjct: 135 AEQSHRRTIPFISEPKTLKQILQTVPSNAVKLVAFEEEAKQGESSQFKEELQKVQNGDHI 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++ GPEGG   EE   L +  F++   LGPRILR++TA + A+A +
Sbjct: 195 MMIFGPEGGLTEEEVHELKNHDFIS-CGLGPRILRTETAPLYALAAI 240


>gi|108760347|ref|YP_629393.1| hypothetical protein MXAN_1133 [Myxococcus xanthus DK 1622]
 gi|108464227|gb|ABF89412.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK
           1622]
          Length = 244

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLF   P     + + +G++ HYL HVLR++EGD + +F+GK   + +++++V   +   
Sbjct: 3   RLFAPLPEPAPAEVELTGERRHYLLHVLRLEEGDALEVFDGKGRAFEARVAHVTPDVVRV 62

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
               +R    + +V  +    K ++L+ ++QK  E+G  A  PV T  +      +    
Sbjct: 63  TLGTARVAPPRREVSILQGLPKGDKLELVLQKGTELGATAFHPVATARSVVKLEPKRAEE 122

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
              R       AA QC    +P +  P  L    ++      ++  DE   +    E   
Sbjct: 123 RTSRWTKIVEEAARQCRRDDVPRVATPAPLLDAARSLTAGTVLLVLDEEESAVPLGEAFR 182

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A      VA++IGPEGG   EE + L +L    P++LG RILR++T
Sbjct: 183 AAGAGTAVALVIGPEGGLAREEVDALMAL-GARPVTLGKRILRTET 227


>gi|15836795|ref|NP_297483.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa 9a5c]
 gi|9104989|gb|AAF83003.1|AE003872_14 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 244

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 20/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
               I    E  + S    + VQ I    +  ++D + QK+ E+G+ AI PV T  +   
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAIA---RGEKMDLIAQKATELGVVAIVPVDTERS-GV 117

Query: 121 HYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
             + +RV           ISA EQC    +P +  P  L+ L +    +   +  D    
Sbjct: 118 RLDSERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQALPEILHPDTLRLILDPK-- 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           SE+ L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A
Sbjct: 176 SEHRLSTLSRLTPV-AVTIAIGPEGGWSPRDLEILKDAGFIG-FSLGPRILRTETAGLTA 233

Query: 234 MALVQAICGD 243
           +A++QA  GD
Sbjct: 234 IAVLQAQLGD 243


>gi|269965751|ref|ZP_06179848.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829619|gb|EEZ83856.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 243

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 26/233 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRMKEG ++LLF+G   E+ + IS V K     +I  +VE    S    
Sbjct: 21  SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKSVLVNITERVESSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130
              Q I    + +++++ IQKSVE+G+  I P+I   ++     +D+ R           
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 134

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            ISA EQC    +P I P  +LE   +      ++        S N+L        +  V
Sbjct: 135 AISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINTLP-----TPVEKV 189

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +LIGPEGG  SEE E      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 190 RLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|315127638|ref|YP_004069641.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913]
 gi|315016152|gb|ADT69490.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913]
          Length = 244

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 20/240 (8%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQ 72
           P+ + T      D   ++  VLRMK G+ + +FNG+ GE+LS+I  V K   +   +E+ 
Sbjct: 11  PIALNTPLNLDDDAAGHVGRVLRMKVGEQVSMFNGEGGEFLSEIIEVSKKTVVVMPLEFN 70

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV----- 127
                    +       + +++D+ IQKSVE+G+  I P+ ++       + DR+     
Sbjct: 71  PHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRC-GVKLSGDRLEKKHQ 129

Query: 128 --RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
             +   I+AAEQ     +P I PP  L+  L+      ++        +E+S++ +    
Sbjct: 130 QWQKIAIAAAEQSGRNFVPIINPPVDLKHWLEQQTDAIKLTLHPR---AEHSIKTI---- 182

Query: 186 HIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +P+  V  L+GPEGG+  +E        FV  + LGPR+LR++TAA+  ++ +Q   GD
Sbjct: 183 TVPDGGVRFLVGPEGGFTDDEMAQTKQQEFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241


>gi|91228680|ref|ZP_01262594.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01]
 gi|91187751|gb|EAS74069.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01]
          Length = 243

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 26/233 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRMKEG ++LLF+G   E+ + IS V K     +I  ++E    S    
Sbjct: 21  SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKSVLVNITERLENNIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TY 130
              Q I    + +++++ IQKSVE+G+  I P+I   ++     +D+ R           
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKI 134

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            ISA EQC    +P I P  +LE   K      ++        S N+L        +  V
Sbjct: 135 AISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRAKYSINTLP-----TPVEKV 189

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +LIGPEGG  SEE E      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 190 RLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|325922372|ref|ZP_08184146.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865]
 gi|325547154|gb|EGD18234.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865]
          Length = 244

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 18/249 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITLAGKRE 61

Query: 66  RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              +  +++    +S   +  I    +  ++D ++QK+ E+G+ AI PV     + T   
Sbjct: 62  ARAMLERAQPLCNESPLSITLIQGIARGEKMDLILQKATELGVAAIVPV---NAERTEVK 118

Query: 124 MD------RV---RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D      RV   R+  ISA EQ     +P +  P  L+   +  D +   +  D     
Sbjct: 119 LDPARMEKRVTHWRSVVISACEQSGRARVPTVAAPLGLQDAAQASDPHALRLTLDPH--G 176

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E+ L  L  +A    V + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+
Sbjct: 177 EHRLATL-PVAAQQRVIVAIGPEGGWSPRDRAILGEAGF-SGLQLGPRILRTETAGLAAI 234

Query: 235 ALVQAICGD 243
           A +Q+  GD
Sbjct: 235 AALQSRFGD 243


>gi|326797241|ref|YP_004315061.1| ribosomal RNA small subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
 gi|326548005|gb|ADZ93225.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
          Length = 243

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 19/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++VD  L   T+       + +   VLR+KEG  I+LFNG  GE+ + +  V K   
Sbjct: 3   IPRIYVDIDLTEHTEIILPDSAFQHCCKVLRLKEGHAIILFNGDGGEYDATLYNVQKRAA 62

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                  R    +S ++     S  +  R+DY IQK+VE G+  I+P+ +   +      
Sbjct: 63  SAQLTTYRVLENESPLKVTIGQSLSRGERMDYAIQKAVESGVFRIQPLFSERCE-VKLQE 121

Query: 125 DRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           DR+       +   ISAAEQC    +P I  P      L +W   C  +   +     +S
Sbjct: 122 DRMEKRLKHWQQVAISAAEQCGRGVVPKILEPIN----LLDWVEKCNEML--KITLHHHS 175

Query: 178 LEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + +H     P  ++A+LIGPEGG    E E      F + ++LGPR+LR++TA V A+ 
Sbjct: 176 AKPIHDFERPPENSIALLIGPEGGLTDIEVEKASLFGFQS-IALGPRVLRTETAPVVALT 234

Query: 236 LVQAICGD 243
            +  + GD
Sbjct: 235 TLNLMWGD 242


>gi|118594425|ref|ZP_01551772.1| hypothetical protein MB2181_02115 [Methylophilales bacterium
           HTCC2181]
 gi|118440203|gb|EAV46830.1| hypothetical protein MB2181_02115 [Methylophilales bacterium
           HTCC2181]
          Length = 246

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR-SQTKQSD--VQYIF 86
           H+  +V+R+K  D I+LFN    ++ ++I  + K+ R +V  QS+ +  K SD  ++ I 
Sbjct: 24  HHATNVMRLKLSDKIILFNNDVYDFGAEIIRISKN-RVEVVIQSKIANRKDSDLKIRLIQ 82

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCD 139
           S   T ++D++IQKSVE+G+  I P+ ++ +     N DR        +    SA EQC 
Sbjct: 83  SISSTEKMDWIIQKSVELGVHTIVPIFSQRSI-IKLNNDRAEKKLSHWKQIIQSACEQCG 141

Query: 140 ILTLPFIYPPTTLEFL-----LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193
              +P I+ P   +       + N DH   I+    +  ++NS   +  I   P+ + I+
Sbjct: 142 RSKVPEIFIPKKFDAFWSNETISNKDHLKLIL----SPLAKNSFRTISTIK--PSAIDIM 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+  EE        F+ P  +GPRILR++TA +A +AL+Q   GD
Sbjct: 196 IGPEGGFSEEEVVNAEKNGFI-PFEIGPRILRTETAPLAMLALLQYKYGD 244


>gi|88705487|ref|ZP_01103198.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88700577|gb|EAQ97685.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 245

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 25/228 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS--DVQYIFS 87
            ++A  LRM+ GD++ LF+G   E   +IS + KS    +    +  T++S  D   I +
Sbjct: 26  RHIAKALRMRAGDSLCLFDGSGIEAHGEISDLDKSQVSVIVKSIQQPTRESPLDTVLIIA 85

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQC 138
             + +R+D ++QK+ E+G+  I P+I+   + T   +D  R            ISA EQC
Sbjct: 86  LSRGDRMDTVVQKATELGVTEIWPMIS---ERTGVRLDETRLARKRQHWERIAISACEQC 142

Query: 139 DILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
               LP +  PT+ E  L+     D + +++    T    + L       H  ++ +L+G
Sbjct: 143 GRNRLPTVETPTSFEETLQRAAKGDDSLRLIL--HTSAHPSPLP-----THCKSLTLLVG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+  EE        F   L +GPRILR++TA +  +AL QA  GD
Sbjct: 196 PEGGFSDEEVTAALDQGFCA-LQMGPRILRTETAPLVGLALAQARWGD 242


>gi|303238634|ref|ZP_07325167.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2]
 gi|302593753|gb|EFL63468.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2]
          Length = 247

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 14/248 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++           +G+ Y+++  VLR+K  + + L +G   E++++I   G    
Sbjct: 1   MPRFFINSKDVFDDNINITGEDYNHIKKVLRLKCEEIVTLSDGIGNEYVAEIKDFGDGFV 60

Query: 67  FKVEYQSRSQTKQSDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +S   T +  ++   Y   P K++++D++IQKSVE+G+  I PV+T  T      
Sbjct: 61  HTKVIESYKNTTEPPIKVTLYQGLP-KSDKMDFIIQKSVELGISRIVPVLTERTVVRLDS 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            ++     +R    +  AA+QC+   +P I  P + +  +K   H+  +        S+N
Sbjct: 120 EKDAAKKCERWNRISQEAAKQCNRGIIPKIEVPISFKEAIKKV-HDVPLSLIPYEKESKN 178

Query: 177 SLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           SL++ L ++  I  V++ IGPEGG+  +E E   +    + ++LGPRILR++TA +  + 
Sbjct: 179 SLKQILKSVGDISEVSVFIGPEGGFTEQEIEEAVNCGL-SSVTLGPRILRTETAGITVLT 237

Query: 236 LVQAICGD 243
           ++    GD
Sbjct: 238 ILMYELGD 245


>gi|254373211|ref|ZP_04988700.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570938|gb|EDN36592.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 242

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IKT   + +IQK+ E+G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  I
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240


>gi|148266299|ref|YP_001233005.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter uraniireducens
           Rf4]
 gi|146399799|gb|ABQ28432.1| protein of unknown function DUF558 [Geobacter uraniireducens Rf4]
          Length = 246

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 15/230 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           SGD + ++A VLR+K G +++L +G   E    I+ VG KS+  +VE    + T  +  +
Sbjct: 19  SGDLFRHMAKVLRLKAGTSVILADGAGRECTGVITAVGAKSLEIRVEEGPAAPTGDNGPR 78

Query: 84  ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISA 134
              Y   P K ++L++++QK  E+G+  I P      I + T Q     ++R R     A
Sbjct: 79  ITLYQGMP-KGDKLEFIVQKCTELGVAEIVPFTAARSIAKVTHQRGMERIERWRRIATEA 137

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAIL 193
           A Q    T+P +     L  +L+   H+ +++  +E  G  N L++  +   IP ++A+L
Sbjct: 138 ARQSKRRTVPQVTLAENLSEVLQAAQHSVKLLLWEEEQG--NRLKETLSGLPIPESIAVL 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +GPEGG  +EE     +  F+ PLSLG RI+R++TA +  ++++Q   GD
Sbjct: 196 VGPEGGLTAEEAAAASACGFI-PLSLGKRIVRTETAGIIILSILQFYWGD 244


>gi|320450557|ref|YP_004202653.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01]
 gi|320150726|gb|ADW22104.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01]
          Length = 228

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 16/217 (7%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           +  +L  VLR K GD   +F+  D E L+++  +G  +R+++  + R   ++  V+    
Sbjct: 19  ESRHLLEVLRAKVGDRFTVFD-VDREALAEVVELGPPVRYRI-LEERRPEREVGVEVALY 76

Query: 88  P--IKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142
           P  +K ++L  +++ + E+G   I+P++TR++   +     + R++   + AA+Q   L 
Sbjct: 77  PALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLKRLQAIAVEAAKQSGRLR 136

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P + PP  L  L K        V A         L K        ++A+ +GPEGG+  
Sbjct: 137 VPEVLPPIPLNALPKVEQGMVAHVGARSLVREVLDLGK--------SLALAVGPEGGFAE 188

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           EE E L    F TP+ LG RILR++TAA+A +AL  A
Sbjct: 189 EEVELLQEKGF-TPVFLGRRILRAETAAIALLALCTA 224


>gi|332991913|gb|AEF01968.1| hypothetical protein ambt_02070 [Alteromonas sp. SN2]
          Length = 242

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 20/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ ++ + + + +  H++A VLR+K    I+LFNG   E+ ++I    +  
Sbjct: 2   RIPRIYYPNPIPLEEEFQLTEEAGHHIASVLRLKANHPIVLFNGDGNEYSAQIINAQRKK 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            F       + +K+S +         K +R+D ++QKSVE+G+  I P+++   +     
Sbjct: 62  VFVEADACLTLSKESSLNIHLGQGVSKGDRMDTVLQKSVELGVTEITPILS---ERCTVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I A EQ    TLP + PP  L   L     + ++V A    G+
Sbjct: 119 LDEARWEKKLLQWQKIIIGACEQSGRNTLPSLNPPIALNKWLSESTSSSRLVLAP---GA 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E  L +    +      +LIGPEGG    E    +   F T  SLGPRILR++TAA++++
Sbjct: 176 EKPLARQPYNSQ--GFRLLIGPEGGLSEGEIHQANESGF-TSCSLGPRILRTETAAISSI 232

Query: 235 ALVQAICGDW 244
           +++QA  GD+
Sbjct: 233 SILQAQHGDF 242


>gi|254492173|ref|ZP_05105347.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxidans
           DMS010]
 gi|224462498|gb|EEF78773.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxydans
           DMS010]
          Length = 242

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 19/225 (8%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQS--DVQYI 85
           + +   VLR+K+G  I LFNGK  E+ + +++V +  R + E  +  +Q  +S  ++  +
Sbjct: 25  HRHAIQVLRLKQGARIQLFNGKGLEYQATLTHVERK-RSEAELGEQLTQASESPLNITLL 83

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQC 138
               +  R+D+ IQK+VE+G+  I PV+T    N     DR+       +   +SA EQ 
Sbjct: 84  QGISRGERMDFAIQKAVELGVNQIIPVMTERC-NVQLKHDRIEKRLAHWQGVIVSACEQS 142

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               LP +     ++  L +     ++V   +     N L+          + +LIGPEG
Sbjct: 143 GRAVLPTLSEVVDMQNALNSTADTMKLVLDPQAQTRFNDLQA------ATQLTLLIGPEG 196

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G   +E +   S  F T +  GPRILR++TA+ AA+A+VQ++ GD
Sbjct: 197 GLTDDEVKMATSSGF-TAVQFGPRILRTETASTAALAVVQSLWGD 240


>gi|285018976|ref|YP_003376687.1| hypothetical protein XALc_2213 [Xanthomonas albilineans GPE PC73]
 gi|283474194|emb|CBA16695.1| hypothetical protein XALc_2213 [Xanthomonas albilineans]
          Length = 243

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 17/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-- 63
            L R  VD PL    +     +   +L  VLR++EGD  +LFNG   ++ +++   GK  
Sbjct: 2   RLTRCHVDLPLHTGAEVALPEEVAGHLLRVLRLREGDRCVLFNGNGCDYDAELLPTGKRG 61

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            S R  V     +++  + +  +    +  ++D ++QK+ E+G+ AI P+    T     
Sbjct: 62  ASARIGVARPVDNESSLA-ITLLQGVARGEKMDLILQKATELGVSAIVPIWAERTEVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            Q T   +   R+  +SA EQ     +P    P    +      D  C+++   +    E
Sbjct: 121 AQRTDKRVAHWRSVVVSACEQSGRARVPSLSAPLALADAARAAADSPCRLILDPQ---GE 177

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L  L  I +   + I IGPEGG+   ++ TL S  F+  L LGPRILR++TA++AA+A
Sbjct: 178 QRLRTLDFIGN--AITIAIGPEGGWSPRDRTTLESAGFLG-LRLGPRILRTETASLAAIA 234

Query: 236 LVQAICGD 243
            +QA  GD
Sbjct: 235 ALQAHGGD 242


>gi|152998316|ref|YP_001343151.1| hypothetical protein Mmwyl1_4321 [Marinomonas sp. MWYL1]
 gi|150839240|gb|ABR73216.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1]
          Length = 248

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 34/258 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R+F+D  L   T        + +L  VLR+K    I +FNG++        + GKS +
Sbjct: 3   IPRIFIDSELNENTTIPLPDSAFQHLCKVLRLKSDHPIRVFNGQE--------FNGKSGQ 54

Query: 67  FKV---EYQSRSQTKQ-SDVQYIFS--PIKTN---------RLDYMIQKSVEMGMGAIRP 111
           F     + + RS     +D + + +  PI+           R+DY IQKSVE G+ AI+P
Sbjct: 55  FNATLCDVEKRSANIHVADFEALNNEPPIQVTIGQTLSRGERMDYAIQKSVEAGVFAIQP 114

Query: 112 VITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI 165
           + +   +               +   ISAAEQC    +P +YPP  L   + N +   ++
Sbjct: 115 LFSERCEVKLQDGRAEKRQQHWQQIAISAAEQCGRGVVPIVYPPMGLSEWVANCNEMLKL 174

Query: 166 VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                +       EK         VA+LIGPEGG   +E +      F   ++LGPR+LR
Sbjct: 175 TLHHHSAKPIRQYEK----PANNQVALLIGPEGGLTEKEVQLSEKSGF-NAITLGPRVLR 229

Query: 226 SDTAAVAAMALVQAICGD 243
           ++TA + A++++ A+ GD
Sbjct: 230 TETAPIVALSVINALWGD 247


>gi|302877374|ref|YP_003845938.1| hypothetical protein Galf_0129 [Gallionella capsiferriformans ES-2]
 gi|302580163|gb|ADL54174.1| protein of unknown function DUF558 [Gallionella capsiferriformans
           ES-2]
          Length = 243

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 20/250 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           + R +   P+  +       D  H+ + VLR++EGD++ LF+G   E+   I+   GK +
Sbjct: 1   MPRFYCPPPIPAQGAFNLPADAAHHASRVLRLREGDSVQLFDGTGHEYHGAITDMTGKQV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               +       ++S +Q + +     + ++D++IQK+ E+G   I+P+ T  +     +
Sbjct: 61  VVG-DIVHIEADRESPLQIVLAQALCSSEKMDWVIQKATELGATEIQPLATGRS-VAKLS 118

Query: 124 MDRVRTYT-------ISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGS 174
            DR    T       ISA EQC    LP I+PP  +   L++       + +   +   S
Sbjct: 119 ADRAAKRTEHWQQVAISACEQCGRNVLPVIHPPVEIGTWLQHMLDSDMSKYILLPQGAKS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               EK  +        +LIG EGG+   E +      F TP+ LG R++R++TAAVA +
Sbjct: 179 LQEQEKPQS-----GAVLLIGAEGGFTEAESDNALRCGF-TPVRLGARVMRTETAAVAGL 232

Query: 235 ALVQAICGDW 244
           A++Q + GD+
Sbjct: 233 AVLQTLWGDF 242


>gi|153835274|ref|ZP_01987941.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|156975827|ref|YP_001446734.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116]
 gi|148868249|gb|EDL67389.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|156527421|gb|ABU72507.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116]
          Length = 243

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 34/237 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D   ++  VLRMKEG  +LLF+G   E+ + IS V K     VE   R ++       
Sbjct: 21  SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKK-NVMVEISERVESS------ 73

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128
           I SP+         + +++++ IQKSVE+G+  I P+I   ++     +D+ R       
Sbjct: 74  IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130

Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                ISA EQC    +P I P  +LE   +      ++        S N+L        
Sbjct: 131 WQKIAISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  S+E +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 186 VEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|262273734|ref|ZP_06051547.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae
           CIP 101886]
 gi|262222149|gb|EEY73461.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae
           CIP 101886]
          Length = 243

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            + R+F   PL    +   S D  +++  VLRM+ G  +LLF+G   E+ + I+  G KS
Sbjct: 2   RIPRIFHPEPLPDTGRVALSDDAANHVGRVLRMQAGQEVLLFDGSGAEFPAVIAESGKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
           +   V E   RS     D+       + +++++ IQKSVE+G+  I P+I+        N
Sbjct: 62  VTVDVAERVERSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNVITPLISERC-GVKLN 120

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            DR        +   I+A EQC    +P + P  +L+  ++      ++        S N
Sbjct: 121 ADRFDKKWQQWQKIAIAACEQCGRNIVPEVRPVMSLDAWMQEPFDGLKLNLHPRAKYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +      +  + +LIGPEGG  SEE        F   L LGPR+LR++TAA+ A+  
Sbjct: 181 TLPE-----PVSRLRLLIGPEGGLSSEEIARTRKFGFEETL-LGPRVLRTETAALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|118497856|ref|YP_898906.1| hypothetical protein FTN_1271 [Francisella tularensis subsp.
           novicida U112]
 gi|194323829|ref|ZP_03057605.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423762|gb|ABK90152.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194322193|gb|EDX19675.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|332678571|gb|AEE87700.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
           novicida Fx1]
          Length = 242

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IK+   + +IQK+ E+G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  I
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240


>gi|254508609|ref|ZP_05120725.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
 gi|219548460|gb|EED25469.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
          Length = 225

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 22/231 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDV 82
           S D   ++  VLRMKEG ++LLF+G   E+ + IS V K  +   V E   RS     D+
Sbjct: 3   SDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPATISSVTKKHVEVDVTERIERSAESPLDL 62

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTIS 133
                  + +++++ IQKSVE+G+  I P+I   ++     +D+ R            IS
Sbjct: 63  HLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKIAIS 119

Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A EQC   T+P I P   L E+  +++D   ++        S N+L        +  V +
Sbjct: 120 ACEQCGRNTVPEIRPIMQLEEWCAEDYD-GLKLNLHPRAKYSINTLP-----TPVEKVRL 173

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 174 LIGPEGGLSAEEIGMTEEYKFEETL-LGPRVLRTETAALTAITALQVRFGD 223


>gi|163803743|ref|ZP_02197601.1| hypothetical protein 1103602000580_AND4_13698 [Vibrio sp. AND4]
 gi|159172462|gb|EDP57330.1| hypothetical protein AND4_13698 [Vibrio sp. AND4]
          Length = 243

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 22/229 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQYI 85
           D   ++  VLRMKEG ++LLF+G   E+ + IS V K     VE   R++   +S +   
Sbjct: 23  DAASHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKK-NVLVELSERTENSIESPLDLH 81

Query: 86  FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISA 134
           F  +  + +++++ IQKSVE+G+  I P+I   ++     +D+ R            ISA
Sbjct: 82  FGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQWQKIAISA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P  +LE   +      ++        S N+L        +  V +LI
Sbjct: 139 CEQCGRNIVPEIRPIMSLEAWCQEEYDGLKLNLHPRAKYSINTLP-----TPVKKVRLLI 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG    E +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 194 GPEGGLSCSEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|21672668|ref|NP_660735.1| hypothetical protein BUsg395 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25009589|sp|Q8K9E4|RSME_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|21623305|gb|AAM67946.1| hypothetical 26.9 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 246

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 17/251 (6%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +   + R+++ + L I      S    HY+  VLRMK+ D + +FN  +  + S+I  + 
Sbjct: 1   MKKRIPRIYIKYFLQINQVISLSKSYTHYIKKVLRMKKKDKLEIFNNTNYIFFSEILEIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--Q 118
                 +  + + +  +S +      +  K  ++++ IQKSVE+G+  I P+ + Y   Q
Sbjct: 61  NHTIEIIILKKQIKNLESPLLIHLGQVISKNEKMNFSIQKSVELGVNTITPLFSEYCNFQ 120

Query: 119 NTHYNMDRVRTY----TISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCG 173
           N      + + +     IS+ EQC    +P I  P   L +  + +++  +IVF+     
Sbjct: 121 NKLICFPKKKIHWENIVISSCEQCHRNNIPEIKNPEYILPWCKRTYENETKIVFSPSATF 180

Query: 174 SENSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + N L EK++       V +LIG EGG+   E E +    F+ P+ LGPRILR++TA +A
Sbjct: 181 TINELPEKINC------VRLLIGSEGGFSFLEIEKIIQYGFI-PIKLGPRILRTETAVIA 233

Query: 233 AMALVQAICGD 243
           A+  +Q   GD
Sbjct: 234 AITALQIKFGD 244


>gi|260888226|ref|ZP_05899489.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC
           35185]
 gi|330838435|ref|YP_004413015.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas
           sputigena ATCC 35185]
 gi|260862060|gb|EEX76560.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC
           35185]
 gi|329746199|gb|AEB99555.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas
           sputigena ATCC 35185]
          Length = 261

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 126/249 (50%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R+F++  +    +    G   H+L  V+R K G+ +L+ +G  G   ++++       
Sbjct: 1   MRRVFLEGEIADTME--VRGADAHHLQRVMRAKLGEKLLVADGAGGSAEAEVAGFADGRV 58

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQ 118
            +RF V   S +   Q++++      K +R+D+++QK+ E+G+  IRPV++     RY +
Sbjct: 59  QLRF-VRRLSEAAESQAEIELFQCLPKGDRMDFIVQKTTELGVACIRPVLSQNVVVRYDE 117

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGS 174
                 ++R +     AA+QC    +P + P   L   ++     ++  ++ F +     
Sbjct: 118 KKARARVERWQKIAAEAAKQCGRTRIPEVMPIVPLRAAMEGQGAAEYALRLFFYEME--E 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              L  + + +    + +L+GPEGG+   E +   +  F + ++LG RILR DTAA+ A+
Sbjct: 176 RRELRTVLSDSEARRIFMLVGPEGGFDEAEAQLAVAHGF-SAVTLGRRILRVDTAAIVAL 234

Query: 235 ALVQAICGD 243
           ALVQ   GD
Sbjct: 235 ALVQYEKGD 243


>gi|269960438|ref|ZP_06174811.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834865|gb|EEZ88951.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 243

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 34/237 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D   ++  VLRMKEG  +LLF+G   E+ + IS V K     VE   R ++       
Sbjct: 21  SDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKK-NVMVEISERVESS------ 73

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128
           I SP+         + +++++ IQKSVE+G+  I P+I   ++     +D+ R       
Sbjct: 74  IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130

Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                +SA EQC    +P I P  +LE   +      ++        S N+L        
Sbjct: 131 WQKIAVSACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  S+E +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 186 VEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|254374666|ref|ZP_04990147.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572385|gb|EDN38039.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 242

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIIAIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IK+   + +IQK+ E+G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  I
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240


>gi|226952621|ref|ZP_03823085.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226836610|gb|EEH68993.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 239

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L      + +   +H+   VLR KE +  + FNGK GE+L  ++ + K   
Sbjct: 1   MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTVINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
                Q     + +    +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120

Query: 124 -----MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSE 175
                +D  R+  I+A EQC +  +P I  P +L   +K+     + V A   D+T    
Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           NS          P++A+LIGPEGG    E ET +   F     +G R+LR++TA V A++
Sbjct: 181 NS---------TPDIALLIGPEGGLSETEIETANQYQFKN-WCIGDRVLRTETAPVVALS 230

Query: 236 LV 237
           ++
Sbjct: 231 IL 232


>gi|148980482|ref|ZP_01816079.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3]
 gi|145961207|gb|EDK26521.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3]
          Length = 243

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 20/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81
           D   ++  VLRMKEG  +LLF+G   E+ + I+ V K     ++  ++E  S S      
Sbjct: 23  DAAGHVGRVLRMKEGQEVLLFDGSGTEFPATIAEVSKKNVTVNVTERIERSSESPLDLHL 82

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
            Q I    + +++++ IQKSVE+G+  I P+I+         +     + + +   I+A 
Sbjct: 83  GQVIS---RGDKMEFTIQKSVELGVNTITPLISERCGVKLDAKRFEKKLAQWQKIAIAAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC   T+P I P   LE          ++        S N+L +      I  V +LIG
Sbjct: 140 EQCGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PISKVRLLIG 194

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 195 PEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|78044093|ref|YP_359279.1| hypothetical protein CHY_0418 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996208|gb|ABB15107.1| conserved hypothetical protein TIGR00046 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 248

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 128/237 (54%), Gaps = 16/237 (6%)

Query: 19  KTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR 74
           +TQG     +GD   ++A VLR+K G+ + L + ++  +L ++  V K  ++ K+  + +
Sbjct: 10  QTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLVQLKILEKKK 69

Query: 75  SQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRV 127
             T+   +V  +    K +++D+++QK+ E+G+  I PV T  T      +      +R 
Sbjct: 70  VVTRPPVNVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVVFDERKKKDRCERW 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAH 186
           +     AA+Q  +  +P I+P   L+  L  +  +  I+   E  G E  SL++L     
Sbjct: 130 QKIAYEAAKQAGVSRVPEIFPVIDLK-ALPEFISDALILVPYE--GEEQTSLKQLLNKEA 186

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + NV ++IGPEGG+   E E L S   VT +SLGPRILR++TAA+A +++V    GD
Sbjct: 187 VKNVTVIIGPEGGFDPGEIEYLKSFGAVT-VSLGPRILRTETAALAVLSMVLYQWGD 242


>gi|86146407|ref|ZP_01064731.1| hypothetical protein MED222_22541 [Vibrio sp. MED222]
 gi|85835886|gb|EAQ54020.1| hypothetical protein MED222_22541 [Vibrio sp. MED222]
          Length = 243

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 20/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81
           D   ++  VLRMKEG +ILLF+G   E+ + I+ V K     ++  ++E  S S      
Sbjct: 23  DAAGHVGRVLRMKEGQDILLFDGSGAEFPATIAEVSKKNVTVNVTERIERSSESPLDLHL 82

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
            Q I    + +++++ IQKSVE+G+  I P+I+        T+     + + +   I+A 
Sbjct: 83  GQVIS---RGDKMEFTIQKSVELGVNTITPLISERCGVKLDTKRFEKKLAQWQKIAIAAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ    T+P I P   LE          ++        S N+L +      I  V +LIG
Sbjct: 140 EQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PISKVRLLIG 194

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 195 PEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|323493586|ref|ZP_08098707.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG
           20546]
 gi|323312109|gb|EGA65252.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG
           20546]
          Length = 243

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 36/238 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82
           S +   ++  VLRMKE   +LLF+G   E+ + IS V  KS+   V E   RS     D+
Sbjct: 21  SEEAAGHVGRVLRMKEEQQVLLFDGSGAEFPATISEVSKKSVEVNVIERIERSSESPLDL 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
                  + +++++ IQKSVE+G+  I P+I+         +     + + +   ISA E
Sbjct: 81  HLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDHKRFEKKLAQWQKIAISACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIP- 188
           QC   T+P I P   LE                E CG E    KL       ++I  +P 
Sbjct: 141 QCGRNTVPEIRPIMQLE----------------EWCGEEYDGLKLNLHPRAKYSINTLPT 184

Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               V +LIGPEGG  +EE     +  F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 185 PVEKVRLLIGPEGGLSAEEISMTENYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|28899384|ref|NP_798989.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839188|ref|ZP_01991855.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|260366255|ref|ZP_05778714.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus K5030]
 gi|260878928|ref|ZP_05891283.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AN-5034]
 gi|260898271|ref|ZP_05906767.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus Peru-466]
 gi|260903375|ref|ZP_05911770.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AQ4037]
 gi|28807620|dbj|BAC60873.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747290|gb|EDM58274.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|308085866|gb|EFO35561.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus Peru-466]
 gi|308090439|gb|EFO40134.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AN-5034]
 gi|308107481|gb|EFO45021.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AQ4037]
 gi|308113508|gb|EFO51048.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus K5030]
          Length = 243

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 34/237 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D   ++  VLRMKEG  +LLF+G   E+ + IS V K     V+   R ++       
Sbjct: 21  SEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKK-NVLVDVTERVESN------ 73

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128
           I SP+         + +++++ IQKSVE+G+  I P+I   ++     +D+ R       
Sbjct: 74  IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130

Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                ISA EQC    +P I P  +LE   +      ++        S N+L        
Sbjct: 131 WQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  SEE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 186 VEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|238897814|ref|YP_002923493.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465571|gb|ACQ67345.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 243

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 20/248 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++  +P    TQ + S +  H++  VLRMK G ++ LF+  +    + I  + K   
Sbjct: 3   IPRIYHPYPFFAHTQIELSEEAAHHVIRVLRMKPGQSLYLFHDSNDIIQANIIRIDKK-- 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
            KV  Q +    +++   ++  +     ++ +++Y +QKSVE+G+ ++ P+ +       
Sbjct: 61  -KVYVQLKEAILKNNESPLYLHLGQVICRSEKMEYTLQKSVELGVHSVTPLFSERCGVKI 119

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             +     + + +   ISA EQC    +P IY    L     + D++ ++ F  +     
Sbjct: 120 DGERLQKKIQQWKKIAISACEQCGRNKIPKIYNALPLHNWCAHQDNSLKLNFVPKANNRI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L     I  +  V ILIGPEGG  ++E        F+ P+SLGPR+LR++T A+ A+ 
Sbjct: 180 NTL-----IPPVSRVRILIGPEGGLSNDEIAMAADYEFL-PISLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|282896925|ref|ZP_06304931.1| conserved hypothetical protein [Raphidiopsis brookii D9]
 gi|281198334|gb|EFA73224.1| conserved hypothetical protein [Raphidiopsis brookii D9]
          Length = 262

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L+RL +      + Q   +  Q HYL  VLR+++GD  +  +G    WL+K++     
Sbjct: 2   AQLQRLTIQISQLQQNQVLLTPKQKHYLLRVLRLQDGDQFISMDGMGKWWLTKLTADTAQ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
           I   ++  +        +  I +  K N  D +++ S E+G+ +I PV++  T    +  
Sbjct: 62  I---LQTLTPKTELPLSITLILALPKGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSPQ 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R R     AAEQ +   +P I  P      L  + +     F    C +  S   L 
Sbjct: 119 KLERWRRIAKEAAEQSERAFVPTILEPVAFSTALSEYSN-----FKCYICEARGSYPHLI 173

Query: 183 AIAHIP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            I +IP      V I IGPEGG+   E  T     F  P+SLG RILR+ TA + A++L+
Sbjct: 174 NIINIPLKDIKEVVIAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSLI 232

Query: 238 QAIC 241
            A C
Sbjct: 233 AAAC 236


>gi|332535117|ref|ZP_08410927.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035435|gb|EGI71933.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 244

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 32/234 (13%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  VLRMK G+++ +FNG+ GE+LS+I  V K     +  +      +S ++   
Sbjct: 23  DAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKTVVVMPLELNPHDVESPLKIHL 82

Query: 87  SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRV-------RTYTISAA 135
                + +++D+ IQKSVE+G+  I P+   ++Q     +  DR+       +   I+AA
Sbjct: 83  GQCVSRGDKMDFTIQKSVELGITEITPI---FSQRCGVKLMGDRLEKKHQQWQKIAIAAA 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHIP----N 189
           EQ     +P I+PP      LK W        A +T   + +L     H+I  I      
Sbjct: 140 EQSGRNFVPIIHPPID----LKQW-------LAQQTDAIKLTLHPRAEHSIKTITVPKDG 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V  L+GPEGG+  +E      L FV  + LGPR+LR++TAA+  ++ +Q   GD
Sbjct: 189 VRFLVGPEGGFTDDEMALTKQLEFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241


>gi|312795128|ref|YP_004028050.1| surface protein [Burkholderia rhizoxinica HKI 454]
 gi|312166903|emb|CBW73906.1| surface protein [Burkholderia rhizoxinica HKI 454]
          Length = 271

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 32/256 (12%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R FV  PL          D   ++ HVLR++ GD  +LFNG+ G++ +++  + K     
Sbjct: 28  RFFVPMPLHSGHSMPLPDDVVRHM-HVLRLQAGDKAILFNGEGGQFDAELLQLDK----- 81

Query: 69  VEYQSRSQTKQSDVQYIFSPIKT---------NRLDYMIQKSVEMGMGAIRPVIT----- 114
               +  Q  + D + +  P +          +++D++++K++E+G+ ++ P++T     
Sbjct: 82  --RSATVQVGRFDAREVEPPYRVVLAQGIAGGDKMDWLLEKAIELGVASVIPLVTARSVV 139

Query: 115 RYT-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFA 168
           R T +         +    +A EQC    LP + PPT +   L++      D+  +++ +
Sbjct: 140 RLTGERAARRHAHWQALVRAACEQCGRNQLPDVAPPTDVMAWLESSVALPRDNALRLLLS 199

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                +E     L   A    V ++IGPEGG  + E+    S  F+ PL LGPR+LR++T
Sbjct: 200 PR---AERPFAALPDTAPAAPVIVMIGPEGGLSATEEAAAISHGFM-PLGLGPRVLRTET 255

Query: 229 AAVAAMALVQAICGDW 244
           A +A +A + A  G W
Sbjct: 256 AGIAVLAALAARWGGW 271


>gi|319789344|ref|YP_004150977.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1]
 gi|317113846|gb|ADU96336.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1]
          Length = 239

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 16/227 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV--EYQSRSQTKQSDV 82
           G +  +   VLR+K+GD I++F+G+  E+ + I      S++ K+  E      +  +  
Sbjct: 18  GQEARHALKVLRLKKGDEIIVFDGEGKEYSAVIEAASPTSVKLKIVEEINVNRDSPLNST 77

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI------TRYTQNTHYNMDRVRTYTISAAE 136
            Y+    K  + +  +QK  E+G+  I PV+       +  +N    M R +   ++AA+
Sbjct: 78  LYMGLTNKLQKFELALQKVTELGVTRIVPVVCARSSTAQLVKNWSGKMRRWQEIVVNAAK 137

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    LP +  P  L  +    D + + V  ++   S  + +   A     +V++L+GP
Sbjct: 138 QCGRSVLPELLEPVPLPEVED--DSDLKFVLWEKGGKSLKNYQDYVA----SSVSLLVGP 191

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG    E E L S  F  P+ LG RILR++TAA+A + LVQ I GD
Sbjct: 192 EGGLEKGEIELLESKGF-KPIYLGKRILRAETAAIAGVTLVQFIWGD 237


>gi|293607138|ref|ZP_06689480.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC
           43553]
 gi|292814472|gb|EFF73611.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC
           43553]
          Length = 243

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 10/239 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F D PL    +        H+   VLR+K G++++LFNG+ GE+ + +   GK+   +
Sbjct: 5   RFFCDIPLSAGARIALPDALAHHALRVLRLKAGESVVLFNGQGGEYPAVLDVDGKAGYAQ 64

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD 125
           + ++ +R       +  +      +++D++++K+VE+G   + P+  + +  Q +   +D
Sbjct: 65  LGDFSAREAELAGRITLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGPRLD 124

Query: 126 RVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           +   +      SAAEQC    L  +  P +L   L       +++   E    E+   KL
Sbjct: 125 KRVAHWQRIAQSAAEQCGRNRLMAVDAPRSLADWLAEPAEGLRLLCHPEA--GEDLAGKL 182

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            A   +  + +L+GPEGG+  +E E L     V  +  GPR+LR++TA +A ++ V A+
Sbjct: 183 RAAPGLTALTLLVGPEGGWSDKELE-LARQAGVQAVRFGPRVLRTETAGLALVSAVSAL 240


>gi|169832194|ref|YP_001718176.1| hypothetical protein Daud_2054 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169639038|gb|ACA60544.1| protein of unknown function DUF558 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 249

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS-DV 82
           +GD   +L  VLR+  G  +LL +G    + ++I  V +  +R  +   +         V
Sbjct: 22  TGDDARHLTRVLRLAAGSELLLLDGSGRAYAAEIREVDRDGVRAVITGPAELPADPGLRV 81

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             + S  K +R++ ++QK+ E+G+ AI PVI+  T      +     ++R R     AAE
Sbjct: 82  TLVPSLAKGDRMEDLVQKATEVGVAAIVPVISERTVVRLTPEKAGRRVERWRRIATEAAE 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    +P ++     E  LK         F  E        + L + A +  V +  GP
Sbjct: 142 QCRRPLVPDVHGVCRFEDALKRLPAGGAAFFLWEEERGTGLKQALRSRAPVREVFLFTGP 201

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG+  EE     +   V+ +SLGPR+LR+DTA V A+ALV    GD
Sbjct: 202 EGGFTPEEAAAATARGAVS-VSLGPRLLRTDTAGVVAVALVLYEWGD 247


>gi|163749088|ref|ZP_02156338.1| hypothetical protein KT99_19644 [Shewanella benthica KT99]
 gi|161331158|gb|EDQ02047.1| hypothetical protein KT99_19644 [Shewanella benthica KT99]
          Length = 242

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 40/259 (15%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64
            + R++ D PL I        +   ++  VLRM  G+ I LFNG D ++L++ IS   K+
Sbjct: 2   RIPRIYQDSPLVIGDSLALHDEAASHIGRVLRMTPGEQISLFNGSDHDYLAEIISASKKN 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           I  KV   S +   +S +      +  + +R+D+ IQKSVE+G+  I P+ +        
Sbjct: 62  ISVKV-LSSNTNASESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERC-GVKL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           + DR+       +   ++A EQ     +P I P  +LE     W            CG  
Sbjct: 120 SGDRLEKKRQQWQKIVVAACEQSGRSRVPEIRPAMSLE----AW------------CGEP 163

Query: 176 NSLEKL-------HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
               KL       H I  +P     V +LIGPEGG    E        F T + LGPR+L
Sbjct: 164 TDSLKLNLHPRAAHGIGGLPLEVAKVRLLIGPEGGLSDTEILQTEQDEF-TDILLGPRVL 222

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TAA+ A++ +Q   GD
Sbjct: 223 RTETAALTAISALQLKFGD 241


>gi|294787701|ref|ZP_06752945.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC
           29453]
 gi|294483994|gb|EFG31677.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC
           29453]
          Length = 239

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 27/225 (12%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQSRSQTKQSDVQYIFSP 88
           HVLR++ G+ I LFNG    + +++  + K      + F+    + S      VQ I S 
Sbjct: 27  HVLRLRVGEQITLFNGDGAAYSAQLLQLEKRHATCRVLFRQPENTESPLSIKLVQAISS- 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
               R+D+ IQKSVE+G+ AI+PV++  +      +     + R +   ISA EQC   T
Sbjct: 86  --GERMDFTIQKSVELGVVAIQPVMSERSVVRLSGERADKRVQRWQEIAISACEQCGRNT 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILIGPEGG 199
           +P I P  + E  L+       I+          SL +  ++  +P    V ++IG EGG
Sbjct: 144 IPDILPIVSFEQYLRQKSDELHILM---------SLRQARSLKDLPTPTRVTLMIGAEGG 194

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +   E+    S      + LG R+LR++TA++AA+A +Q + GD+
Sbjct: 195 WTQAEENAAFS-ANCQAVVLGKRVLRTETASLAAIAAMQTLWGDF 238


>gi|86608181|ref|YP_476943.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556723|gb|ABD01680.1| conserved hypothetical protein TIGR00046 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 289

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%)

Query: 5   SHLKRLFVDFPLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           S L RL +D P      G  + +G Q HYL  V R++ GD  L+ +G    W ++    G
Sbjct: 22  SALPRLAID-PAQRDPSGVLRLTGPQQHYLQRVRRLRPGDLFLVLDGSGKLWAARWQAQG 80

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120
             I  +VE   R       +    + +K    D ++++  E+G+  I P++T  T  +  
Sbjct: 81  SQIVGEVETLPRELP--VFLHLGLAVVKGQGFDEVLRQVTELGVARITPLLTERTVLEPG 138

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--------C 172
               +R +     AAEQC+ L  P + PPT       +W    Q V A  T         
Sbjct: 139 SGRQERWQKIVREAAEQCERLRWPQVDPPTP----WTSWLAELQAVRATRTESFWWGIAV 194

Query: 173 GSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             EN+   + A+    IP +AI IGPEGG+   E+        V+ +SLGP ILR+ TAA
Sbjct: 195 ARENAPLLVQALPKLQIPALAIAIGPEGGWTVAERRQAEEYGGVS-VSLGPTILRATTAA 253

Query: 231 VAAMALVQA 239
           V A + + A
Sbjct: 254 VVATSQIAA 262


>gi|300723910|ref|YP_003713221.1| hypothetical protein XNC1_3049 [Xenorhabdus nematophila ATCC 19061]
 gi|297630438|emb|CBJ91103.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 243

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           R++   PL I+T+   S D  +++  VLRM  G  + LF+G +  + ++I+    K+++ 
Sbjct: 5   RIYHPEPLSIETEIYLSDDAANHVGRVLRMSLGQELQLFDGSNQIFNAEITETSKKTVKI 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
           ++    +    +S +      +  +  ++++ IQKSVE+G+  I P+++         + 
Sbjct: 65  RI-LNGKFSDHESPLNLHLGQVMSRGEKMEFTIQKSVELGVSTITPLLSERCGVKLDAER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   ISA EQC    +P I P  +LE   K  D + ++        S N+L 
Sbjct: 124 LEKKLQQWKKIAISACEQCGRNRIPEIRPVMSLEAWCKENDDSLKLNLHPRASQSINTL- 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                  +  V +LIGPEGG  +EE +      F T + LGPR+LR++T A+ A+  +Q 
Sbjct: 183 ----TLPVKKVRLLIGPEGGLSAEEIDMTAKYQF-TDILLGPRVLRTETTALTAITALQV 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|294649934|ref|ZP_06727326.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824163|gb|EFF82974.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 239

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L      + +   +H+   VLR KE +  + FNGK GE+L  ++ + K   
Sbjct: 1   MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
                Q     + +    +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120

Query: 124 -----MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSE 175
                +D  R+  I+A EQC +  +P I  P +L   +K+     + V A   D+T    
Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           NS          P++A+L+GPEGG    E ET +   F     +G R+LR++TA V A++
Sbjct: 181 NS---------TPDIALLVGPEGGLSETEIETANQYQFKN-WCIGDRVLRTETAPVVALS 230

Query: 236 LV 237
           ++
Sbjct: 231 IL 232


>gi|56708314|ref|YP_170210.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670785|ref|YP_667342.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134301732|ref|YP_001121700.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931804|ref|YP_001891789.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|224457434|ref|ZP_03665907.1| 16S rRNA m3U1498 methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370797|ref|ZP_04986802.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875134|ref|ZP_05247844.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604806|emb|CAG45885.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321118|emb|CAL09268.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049509|gb|ABO46580.1| hypothetical protein FTW_0692 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569040|gb|EDN34694.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712713|gb|ACD31010.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841133|gb|EET19569.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159545|gb|ADA78936.1| hypothetical protein NE061598_07235 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 242

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 14/223 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IK+   + +IQK+ E+G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++ 
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIIN 238


>gi|15604043|ref|NP_220558.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia prowazekii
           str. Madrid E]
 gi|6226337|sp|Q9ZDZ5|RSME_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|3860734|emb|CAA14635.1| unknown [Rickettsia prowazekii]
          Length = 198

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 111/198 (56%), Gaps = 16/198 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R++++  L   ++ + + D  HY+  VLR+K  D++ +FNG DGE+L++I+ +GK ++  
Sbjct: 5   RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQIGKNNLSV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            ++ Q +    +S +    + IK+++L   I  + ++G+  I P+ITR  Q    N++R+
Sbjct: 65  VLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQFRTVNIERL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186
               I A EQ + L  P I    TL+  LK   +N  I++A+E        EK+ H+I H
Sbjct: 125 MKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEH-------EKVKHSILH 175

Query: 187 IP-----NVAILIGPEGG 199
           I      ++AI+IGPE G
Sbjct: 176 ISSLLSKDIAIIIGPEEG 193


>gi|170728459|ref|YP_001762485.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella woodyi ATCC
           51908]
 gi|169813806|gb|ACA88390.1| protein of unknown function DUF558 [Shewanella woodyi ATCC 51908]
          Length = 243

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 26/252 (10%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64
            + R++   PL I  Q +   +   ++  VLRM  G+ I LFNG   E+LS+ IS   K+
Sbjct: 2   RIPRIYQASPLQIGNQVELDDEPASHIGRVLRMNAGEQISLFNGDGHEYLSEIISASKKN 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
           +  KV   + ++++     ++   I + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VSVKVLSSTLNESESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I A EQ     +P I P  T+E     W        A++T  ++ +
Sbjct: 122 ERLEKKIQQWQKIVIGACEQSGRSQVPEIRPAMTIEA----WS-------AEQTDATKLN 170

Query: 178 L--EKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           L     H I  +    P V +LIGPEGG    E        F T + LGPR+LR++TAA+
Sbjct: 171 LHPRAAHGIGGLSLTSPKVRLLIGPEGGLSEAEIMMTEQYQF-TDVLLGPRVLRTETAAL 229

Query: 232 AAMALVQAICGD 243
            A++ +Q   GD
Sbjct: 230 TAISALQLRFGD 241


>gi|77361513|ref|YP_341088.1| hypothetical protein PSHAa2598 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876424|emb|CAI87646.1| putative RNA methyltransferase with a deep trefoil knot, RrmA and
           YibK are structural paralogs [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 244

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 20/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  VLRMK G+++ +FNG+ GE+LS+I  V K     +  Q  +   +S ++   
Sbjct: 23  DAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKNVVVMPQQLNTHDVESPLKIHL 82

Query: 87  SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQ 137
                + +++D+ IQKSVE+G+  I P+ ++         DR+       +   I+AAEQ
Sbjct: 83  GQCVSRGDKMDFTIQKSVELGITEITPIFSQRC-GVKLMGDRLDKKHQQWQKIAIAAAEQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIG 195
                +P ++PP  L+  L       ++        +E+S++ +     +P   V  L+G
Sbjct: 142 SGRNFVPVVHPPVDLKQWLAQQSAAIKLTLHPR---AEHSIKTI----TVPKDGVRFLVG 194

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+  EE        FV  + LGPR+LR++TAA+  ++ +Q   GD
Sbjct: 195 PEGGFTDEEMAQTKQQNFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241


>gi|254429679|ref|ZP_05043386.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881]
 gi|196195848|gb|EDX90807.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881]
          Length = 239

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 18/212 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQYIF 86
           H++  VLRM  GD +++FNG+ GEWL+ I+ + K     +E Q+     +T    V    
Sbjct: 25  HHIGKVLRMAVGDELVVFNGRGGEWLASIAAISKKA-VTIEPQAFTDEDRTAPLAVTVAL 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK  R+DY IQK+ E+G G +      R  +    +     +   +   ISA EQC +
Sbjct: 84  PMIKGERMDYAIQKATELGAGELVILDTERCEVRLKGERQDKKLAHWQQVAISACEQCGM 143

Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
             +P +    +L ++L  +      I    E   S  +L+        P +A+L GPEGG
Sbjct: 144 NRVPAVRGVLSLRDWLASDLPALKLIAHPGEKPFSPAALQTQ------PALALLTGPEGG 197

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           +  +E +      F TP +LG R+LR++TA V
Sbjct: 198 FSDDELQRAADAGF-TPFALGNRVLRAETAPV 228


>gi|109899639|ref|YP_662894.1| hypothetical protein Patl_3334 [Pseudoalteromonas atlantica T6c]
 gi|109701920|gb|ABG41840.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 242

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 20/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ-SRSQTKQSDVQY 84
           D  +++A+VLR K G  ++LFNG   E+  +   V K  +R +++ + S S      +  
Sbjct: 23  DASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRKVRVQIDAKLSMSLESPLSIHL 82

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---------QNTHYNMDRVRTYTISAA 135
                + +R+D+++QKSVE+G+  I P+IT            Q  H    ++    I+A 
Sbjct: 83  GQGVSRGDRMDWVLQKSVELGVTEITPLITERCGVKLDEQRWQKKHAQWQKI---IIAAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    LP ++ P   +  +       ++        +E S    H       V +LIG
Sbjct: 140 EQCGRNVLPVLHMPMDFQSWVNQSTQALRLALHPR---AEKSFR--HTSVGKDGVRLLIG 194

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+  +E        F T + LGPR+LR++TAA+ A++ +QAI GD
Sbjct: 195 PEGGFSDQELYQTEQGGFQT-VQLGPRVLRTETAAITAISALQAIYGD 241


>gi|256821459|ref|YP_003145422.1| hypothetical protein Kkor_0233 [Kangiella koreensis DSM 16069]
 gi|256794998|gb|ACV25654.1| protein of unknown function DUF558 [Kangiella koreensis DSM 16069]
          Length = 242

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SI 65
           R+F    L + T+     +   +++ VLRM  G  I LFNG    + ++I  + +   S+
Sbjct: 5   RIFTSEALSLSTEMALDKEASTHISRVLRMNTGQQIELFNGDGFSYFAQIQAIERNQVSV 64

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
           R  VE    +     ++       + ++++  +QK VE+G+    P+IT         + 
Sbjct: 65  RV-VEAIEVNNESPLNIHLFQGISRGDKMELTLQKGVELGVKQFTPLITERCGVKLDAKR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +    SA EQC   ++P +YP   L+  L   ++    +  D    S++S +
Sbjct: 124 WQKKLQHWQKVIESACEQCGRNSIPSLYPAVKLQDALSQLNNTSFFMHPD----SKHSFK 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            + A A    + + +GPEGG+  EE E + S     P+ LGPRILR++TAA+AA++++ +
Sbjct: 180 TIIADAQ-SELQLWVGPEGGFSDEEVEWVESHG-CKPVQLGPRILRTETAALAAVSVMNS 237

Query: 240 ICGDW 244
           + GD+
Sbjct: 238 LWGDF 242


>gi|299769311|ref|YP_003731337.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp.
           DR1]
 gi|298699399|gb|ADI89964.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp.
           DR1]
          Length = 240

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ +S + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTLENFNPNNRNAPFKAVLGQVMSKGDRMDYAIQKATELGVSKIQLLTSDRCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L E+L  +     + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLNEWLSSSELPQSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|149911573|ref|ZP_01900186.1| hypothetical protein PE36_05278 [Moritella sp. PE36]
 gi|149805352|gb|EDM65364.1| hypothetical protein PE36_05278 [Moritella sp. PE36]
          Length = 243

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 26/249 (10%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67
           R+F    L + +  + S D   ++  VLRM  GD + LFNGK G++ + I     KS+  
Sbjct: 5   RIFESGELIVGSSFELSPDGAGHVGRVLRMTTGDTLTLFNGKGGQYQATIEQTTKKSVTV 64

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            + E+Q  +      +    +  + +++D+ IQKSVE+G+ AI P+ +         +  
Sbjct: 65  HIDEFQDINSESPLKIHLGQAISRGDKMDFTIQKSVELGVTAITPLFSERCGVKLSGERL 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
              + + +   I+A EQ     +P + PP      LK+W        A+ET   + +L  
Sbjct: 125 EKKIQQWQKIVIAACEQSGRNFVPQVLPPKQ----LKDWA-------AEETTELKLNLHP 173

Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              ++I  +P     V +LIGPEGG  ++E        F   L LGPR+LR++TAA+ A+
Sbjct: 174 RAKYSINTLPEPKHGVRLLIGPEGGLSADEINMTEQFNFEETL-LGPRVLRTETAALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQCRFGD 241


>gi|125973834|ref|YP_001037744.1| hypothetical protein Cthe_1319 [Clostridium thermocellum ATCC
           27405]
 gi|281417994|ref|ZP_06249014.1| protein of unknown function DUF558 [Clostridium thermocellum JW20]
 gi|125714059|gb|ABN52551.1| protein of unknown function DUF558 [Clostridium thermocellum ATCC
           27405]
 gi|281409396|gb|EFB39654.1| protein of unknown function DUF558 [Clostridium thermocellum JW20]
 gi|316939970|gb|ADU74004.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
           1313]
          Length = 247

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           SG+ ++++  VLR+ +GD + + +G+  ++L +I  +  + I  ++    ++ T+     
Sbjct: 19  SGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDAVINTRIVEAMKNATEPPLKV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            +F  + K++++DY+IQK+VE+G+  I PVIT  T      ++     +R    ++ AA+
Sbjct: 79  TLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMDEKSGSKKYERWNRISMEAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC+   +P +  P + +  L N   +   +   E        E L + + +  V++ IGP
Sbjct: 139 QCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIKLKEVLSSSSSVEKVSVFIGP 198

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG+   E ET  S   + P++LGPRILR++TA +A ++++    GD
Sbjct: 199 EGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSILMYELGD 244


>gi|110832950|ref|YP_691810.1| hypothetical protein ABO_0090 [Alcanivorax borkumensis SK2]
 gi|110646061|emb|CAL15537.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 240

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R F D    +    +      H++  VLRM   D +++FNG+ GEWL++IS + K    
Sbjct: 3   RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAINKKAVC 62

Query: 68  --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              + +    +     V      IK  R+DY IQK+ E+G  A+      R  +    + 
Sbjct: 63  IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178
               +   +   ISA EQC +  +P ++   +L ++L  +      I    E   S  +L
Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHPGEKSFSAAAL 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +          +A+L GPEGG+ ++E +      F +P +LG R+LR++TA VA +A + 
Sbjct: 183 QGQ------TELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALW 235

Query: 239 AICG 242
           A  G
Sbjct: 236 AWHG 239


>gi|256004286|ref|ZP_05429268.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
           2360]
 gi|255991720|gb|EEU01820.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
           2360]
          Length = 254

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           SG+ ++++  VLR+ +GD + + +G+  ++L +I  +  + I  ++    ++ T+     
Sbjct: 26  SGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDAVINTRIVEAMKNATEPPLKV 85

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            +F  + K++++DY+IQK+VE+G+  I PVIT  T      ++     +R    ++ AA+
Sbjct: 86  TLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMDEKSGSKKYERWNRISMEAAK 145

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC+   +P +  P + +  L N   +   +   E        E L + + +  V++ IGP
Sbjct: 146 QCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIKLKEVLSSSSSVEKVSVFIGP 205

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG+   E ET  S   + P++LGPRILR++TA +A ++++    GD
Sbjct: 206 EGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSILMYELGD 251


>gi|254281685|ref|ZP_04956653.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219677888|gb|EED34237.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 242

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R+F D PL    +     +   ++  VLR+  G  + +FNG   ++ + I+ V K S+  
Sbjct: 5   RIFADLPLAQGAEFTLPDNASLHIGRVLRLDSGQPLTVFNGDGEDYHATITTVTKRSVSI 64

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNM 124
           +V    +   T   +V+   +  K +R D+ +QK+ E+G+  I P+++   +        
Sbjct: 65  EVHSVATNGTTSPLEVELGLALSKGDRFDWAVQKATELGVAHITPLVSERVEVRLNPQRE 124

Query: 125 DRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           ++ RT+     ISA EQC   TL  +  PT L   L+  +   ++V  D    +    EK
Sbjct: 125 EKKRTHWHNIVISACEQCGRSTLAGVSSPTQLRPWLERVEAPLKLVL-DHRSATALPEEK 183

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                    VA+LIGPEGG    E E   +  F   L LGPR+LR++TA V A++++   
Sbjct: 184 PD------RVALLIGPEGGLTESELELAEASGFQR-LQLGPRVLRTETAPVVALSVLGNR 236

Query: 241 CGD 243
            GD
Sbjct: 237 WGD 239


>gi|332184390|gb|AEE26644.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
           novicida 3523]
          Length = 242

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNSDSLQYKTKIIAIDNKNITLEVIDKKHINNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IK+   + +IQK+ E+G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   ++   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DIQIPQNDLNLVLCPYTQTKQDFVQKIKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           PEGG+   E    HS  F T ++LG RIL+++TA +  ++++  I
Sbjct: 197 PEGGFSDREMSKFHSNNFYT-INLGKRILKAETAPINILSIINFI 240


>gi|260767459|ref|ZP_05876396.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii
           CIP 102972]
 gi|260617571|gb|EEX42753.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii
           CIP 102972]
 gi|315181239|gb|ADT88153.1| hypothetical protein vfu_A03045 [Vibrio furnissii NCTC 11218]
          Length = 243

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQ 83
           S D   ++A VLRM+EG  +L+F+G   E+ + I   GK  +  V+   R  T  +S + 
Sbjct: 21  SDDAAGHIARVLRMQEGQEVLVFDGSGAEFPAIIHEAGKK-QVVVDLAERIDTNLESPLN 79

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
                +  + +++++ IQKSVE+G+  I P+++         +     + + +   ISA 
Sbjct: 80  LHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLDAKRFEKKLQQWQKIAISAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P  TLE          ++        S N+L +      +  V +LIG
Sbjct: 140 EQCGRNVVPDIRPIMTLEAWCAEQTDALKLNLHPRAKYSINTLPE-----PVTKVRLLIG 194

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 195 PEGGLSAEEIDMTQQYHFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|10945822|gb|AAG24651.1| unknown [Alcanivorax borkumensis]
          Length = 240

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 16/241 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R F D    +    +      H++  VLRM   D +++FNG+ GEWL++IS + K    
Sbjct: 3   RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAISKKAVC 62

Query: 68  --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              + +    +     V      IK  R+DY IQK+ E+G  A+      R  +    + 
Sbjct: 63  IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178
               +   +   ISA EQC +  +P ++   +L ++L  +      I    E   S  +L
Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHPGEKSFSAAAL 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +          +A+L GPEGG+ ++E +      F +P +LG R+LR++TA VA +A + 
Sbjct: 183 QGQ------TELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALW 235

Query: 239 A 239
           A
Sbjct: 236 A 236


>gi|254519874|ref|ZP_05131930.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913623|gb|EEH98824.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 250

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 21/242 (8%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ- 76
           I  + K  GD   +L  VLR+ EGD I+L N    E+L+ IS + K     VE + + Q 
Sbjct: 12  IDNEAKILGDDVKHLYKVLRLNEGDKIVLNNCDGEEFLASISTITKQ-EVIVEIEEKLQI 70

Query: 77  TKQSDVQ-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTY 130
             +S V+ Y+F  + K  ++D ++QK  E+G+    P +T       +     +DR+   
Sbjct: 71  NNESSVKIYLFQGLPKAQKMDLIVQKGTELGITEFIPTLTDRVDIKLKGDFKKLDRLNRI 130

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV--------FADETCGSENSLEKLH 182
            + AA+Q     +P +  P + +  L   ++   ++        F  +T  +   L++  
Sbjct: 131 ALEAAKQSKRSIIPNVVDPISFDEALDKMNNLDMVIVPYENAENFGIKTLFNHTDLDR-- 188

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               I  V IL+GPEGG+  +E   L        ++LG RILR++TA   A +LVQ   G
Sbjct: 189 --TKIKTVGILVGPEGGFEEDEINRLKE-NGAYIVTLGSRILRTETAGFVATSLVQYELG 245

Query: 243 DW 244
           D 
Sbjct: 246 DL 247


>gi|90409107|ref|ZP_01217229.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3]
 gi|90309781|gb|EAS37944.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3]
          Length = 275

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 18/220 (8%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT-KQSDVQYIFSPI--K 90
           HVLR+KEG NI+LFNG  G++ + +  V K     V+  + +QT  +S +      +  +
Sbjct: 62  HVLRLKEGLNIILFNGLGGQFTATLINVKKR-SCTVKITAFTQTDNESPLHLHLGQVISR 120

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCDILTL 143
             R++++IQKSVE+G+  I P+++        N++R+       +   I+A EQ     +
Sbjct: 121 GERMEFIIQKSVELGVNEITPLLSERC-GVKVNVERMAKKHQQWQKIAIAACEQSGRNIV 179

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P ++PP  ++          Q+        S  +L       +I N+ +LIGPEGG    
Sbjct: 180 PIVHPPQQMQQWCTQSTDALQLTLHPRALLSIKTLPD-----NISNIRLLIGPEGGLSDG 234

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E     +L F   L LGPR+LR++TA + A++ +Q   GD
Sbjct: 235 EINLTKTLNFTETL-LGPRVLRTETATLTAISALQFRFGD 273


>gi|84394071|ref|ZP_00992807.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01]
 gi|84375313|gb|EAP92224.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01]
          Length = 243

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 20/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81
           D   ++  VLRMKEG ++LLF+G   E+ + I+ V K     ++  ++E  S S      
Sbjct: 23  DAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKNVTVNVTERIERSSESPLDLHL 82

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
            Q I    + +++++ IQKSVE+G   I P+I+        T+     + + +   I+A 
Sbjct: 83  GQVIS---RGDKMEFTIQKSVELGANTITPLISERCGVKLDTKRFEKKLAQWQKIAIAAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ    T+P I P   LE          ++        S N+L +      +  V +LIG
Sbjct: 140 EQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PVSKVRLLIG 194

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 195 PEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|119470540|ref|ZP_01613243.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7]
 gi|119446241|gb|EAW27518.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7]
          Length = 244

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 24/230 (10%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  VLRMK G+++ +FNG+ GE+LS+I  V K     +  Q      +S ++   
Sbjct: 23  DAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVSKKNVVVMPQQFNPHDVESPLKIHL 82

Query: 87  SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRV-------RTYTISAA 135
                + +++D+ IQKSVE+G+  I P+   ++Q     +  DR+       +   I+AA
Sbjct: 83  GQCVSRGDKMDFTIQKSVELGITEITPI---FSQRCGVKLIGDRLDKKHQQWQKIAIAAA 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAIL 193
           EQ     +P ++PP  ++  L+   +  ++        +E+S++ +     +P   V  L
Sbjct: 140 EQSGRNYVPVVHPPIDIKQWLEQSTNAIKLTLHPR---AEHSIKTI----TVPEDGVRFL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +GPEGG+  EE        FV  + LGPR+LR++TAA+  ++ +Q   GD
Sbjct: 193 VGPEGGFTDEEMAQTKQQEFVD-IRLGPRVLRTETAALTVLSALQLQFGD 241


>gi|328474086|gb|EGF44891.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus
           10329]
          Length = 243

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 34/237 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D   ++  VLRMKEG  +LLF+G   E+ + I  V K     V+   R ++       
Sbjct: 21  SEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVIREVSKK-NVLVDVTERVESN------ 73

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128
           I SP+         + +++++ IQKSVE+G+  I P+I   ++     +D+ R       
Sbjct: 74  IESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLI---SERCGVKLDQKRFEKKLAQ 130

Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                ISA EQC    +P I P  +LE   +      ++        S N+L        
Sbjct: 131 WQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINTLP-----TP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  SEE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 186 VEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|239995591|ref|ZP_04716115.1| hypothetical protein AmacA2_14079 [Alteromonas macleodii ATCC
           27126]
          Length = 242

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 22/251 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ ++ + + +    H++A VLR+K    I+LFNG   E+ ++I  V +  
Sbjct: 2   RIPRVYYPNPIPLEQEFELTEGAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRK- 60

Query: 66  RFKVEYQS-RSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +  VE  +  S  K+S +         K +R+D ++QKSVE+G+  I PVIT   +    
Sbjct: 61  KVTVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVIT---ERCTV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I A EQ     +P +  P +L   L +  +  ++V A    G
Sbjct: 118 KLDESRWEKKIQQWQKIIIGACEQSGRNIIPALNAPVSLNQWLSSSTNTTRLVLAP---G 174

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +E SL +    A      +LIGPEGG    E    +   + + +SLGPRILR++TAA+ +
Sbjct: 175 AEQSLARQPYNAQ--GFRLLIGPEGGLSETEVHQANENGYQS-VSLGPRILRTETAAITS 231

Query: 234 MALVQAICGDW 244
           ++++QA  GD+
Sbjct: 232 LSILQAQHGDF 242


>gi|313897356|ref|ZP_07830899.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2]
 gi|312957726|gb|EFR39351.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2]
          Length = 252

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 12/217 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +Q H++  V+RM++GD I + +      L+++ Y  +    +V  + R    Q+ V+ I 
Sbjct: 21  EQTHHIRRVMRMQQGDVIRVADNSGRVLLAEVEYHQEEAAARVVREVRD-CSQTSVELIL 79

Query: 87  SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
           +   IK  + DY++QKS E+G+  I P      V+    + +   + R       A EQC
Sbjct: 80  AQGMIKGEKWDYLLQKSAELGVAEIIPFVSSRCVVKIKDEKSEKKIVRWNKILCEACEQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPE 197
              TL  + PP T    L   D + +++ + D  C SE   E L A      V +++G E
Sbjct: 140 KRSTLVRLQPPCTFS-QLSQIDADLRLIAYEDADCKSERLCEVLRAHPSPKRVLMVVGSE 198

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           GG+ ++E E L +  F   +SLG RILR++TAA++ +
Sbjct: 199 GGFSADEVEALTATGF-HRVSLGGRILRAETAAISLL 234


>gi|310818984|ref|YP_003951342.1| hypothetical protein STAUR_1711 [Stigmatella aurantiaca DW4/3-1]
 gi|309392056|gb|ADO69515.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 244

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           RLFV  P    T+   SGD++HYL HVLR+ EG ++ +F+G    + ++++ V  +  R 
Sbjct: 3   RLFVPLPEHPPTEVLLSGDRHHYLLHVLRLSEGASLEVFDGTGRAFEARVAAVDAREARL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
            +   +RS   +  +  +    K ++L++++QK  E+G  A  PV T  +      +   
Sbjct: 63  TL-GAARSTPPRRALSVLQGLPKGDKLEWVLQKGTELGAAAFYPVDTARSVVKLEPKRAG 121

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
               R       AA QC    +P ++PP  L    +      Q++  DE   +    E  
Sbjct: 122 ERTLRWEKIVEEAARQCRRNDVPQVHPPAALLDRARALPPGTQLLVLDEEETAVPLGEAF 181

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            A A    VA+++GPEGG   EE   L +L     ++LG  ILR++T
Sbjct: 182 RACAPGAPVALVVGPEGGLTREEVAALRAL-GARGVTLGALILRTET 227


>gi|320106034|ref|YP_004181624.1| hypothetical protein AciPR4_0797 [Terriglobus saanensis SP1PR4]
 gi|319924555|gb|ADV81630.1| protein of unknown function DUF558 [Terriglobus saanensis SP1PR4]
          Length = 237

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 14/229 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL--SKISYVGKSIRFKVEYQSRSQ 76
           +T    +GDQ  +LA VLR + G    +F+   G +L  +++  VG+       ++    
Sbjct: 15  RTSASLTGDQASHLARVLRAEPGQ---IFDVVAGGFLHRAEVVNVGEDAVIFTLHEEMES 71

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYT 131
                V    +  K + L++ I+K+ E+G+  I PV+ R T     Q +   ++R R   
Sbjct: 72  DAALPVHLYLAVYKFDHLEWAIEKATELGVARITPVLARRTEKHLAQASTKRVERWRRIV 131

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           + +++Q     +P +  P TL   LK      +I+ A+     EN+L       H  ++A
Sbjct: 132 LESSKQSRRTEIPVVDDPATLASTLKTCTAGTRILLAE--TEQENTLAAALK-GHAGDIA 188

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + +GPEGG+  EE   L S    T  +LGPRILR++TA +AA+A+  +I
Sbjct: 189 LAVGPEGGWTPEEM-ALFSTQQWTHATLGPRILRAETACIAALAITSSI 236


>gi|218710623|ref|YP_002418244.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio splendidus LGP32]
 gi|218323642|emb|CAV19930.1| Hypothetical protein VS_2677 [Vibrio splendidus LGP32]
          Length = 243

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRMKEG ++LLF+G   E+ + I+ V K     ++  ++E  S S    
Sbjct: 21  SEDAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKNVTVNVTERIERSSESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+I+         +     + + +   I+
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVNTITPLISERCGVKLDAKRFEKKLAQWQKIAIA 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQ    T+P I P   LE          ++        S N+L +      I  V +L
Sbjct: 138 ACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINTLPE-----PISKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|319765029|ref|YP_004128966.1| hypothetical protein Alide_4381 [Alicycliphilus denitrificans BC]
 gi|330827224|ref|YP_004390527.1| ribosomal RNA small subunit methyltransferase E [Alicycliphilus
           denitrificans K601]
 gi|317119590|gb|ADV02079.1| protein of unknown function DUF558 [Alicycliphilus denitrificans
           BC]
 gi|329312596|gb|AEB87011.1| Ribosomal RNA small subunit methyltransferase E [Alicycliphilus
           denitrificans K601]
          Length = 237

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
            VLR++ GD + LFNG+ GEW + ++ +G+S +  +V   +  + + +   ++   +  N
Sbjct: 27  QVLRLQPGDALTLFNGEGGEWTATVARMGRSDVEVEVGAHAPVEREAARAVHLVVGMPAN 86

Query: 93  -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            R+D++++K+ E+G  +I+P+    +      +         +   ++A EQC    +P 
Sbjct: 87  ERMDWLVEKATELGAASIQPIAAARSVLKLAGERAAKRQQHWQAIAVAACEQCGRNRVPP 146

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHIPNVAILIGPEGGYHSEE 204
           +  P     LL +W        A       +    L  A      V +L GPEGG  ++E
Sbjct: 147 VAAP----LLLSDWLRQSAPEGARLVLSLRDGARALREAAGGAGAVWVLHGPEGGLTAQE 202

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++   +  F  P SLG R+LR++TA+VAA+A++
Sbjct: 203 EDAALAQGF-EPASLGARVLRAETASVAALAVL 234


>gi|325122892|gb|ADY82415.1| hypothetical protein BDGL_001829 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ +S + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L E+L  +     + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|332142455|ref|YP_004428193.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552477|gb|AEA99195.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 242

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 20/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ ++ + + + D  H++A VLR+K    I+LFNG   E+ +++  V +  
Sbjct: 2   RIPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQVISVQRKK 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                    S  K+S +         K +R+D ++QKSVE+G+  I PVIT   +     
Sbjct: 62  VIVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVIT---ERCTVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I A EQ     +P +  P +L   L +  +  ++V A    G+
Sbjct: 119 LDESRWEKKIQQWQKIVIGACEQSGRNIIPKLNAPVSLNTWLSSSTNTTRLVLAP---GA 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E  L +    A      +LIGPEGG    E    +   + + +SLGPRILR++TAA+ ++
Sbjct: 176 EQPLARQPYNAQ--GFRLLIGPEGGLSDTEIHQANENGYQS-VSLGPRILRTETAAITSL 232

Query: 235 ALVQAICGDW 244
           +++QA  GD+
Sbjct: 233 SILQAQHGDF 242


>gi|282898816|ref|ZP_06306803.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196343|gb|EFA71253.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 250

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 18/245 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L+RL +      + Q   +  Q HYL  VLR+++GD  +  +G    WL++++    +
Sbjct: 2   AQLQRLTIQASQLQQNQVLLTPQQKHYLLRVLRLQDGDEFISMDGMGKWWLTRLT--ADT 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            +       +++   S    +  P K N  D +++ S E+G+ +I PV++  T    +  
Sbjct: 60  AQILQPLTPKTELPLSITLMLALP-KGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSPQ 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL 181
            ++R R     AAEQ +   +P I  P      L  + +  C I      C +  S   L
Sbjct: 119 RLERWRRIAAEAAEQSERAFVPTILEPVVFNAALSEYINSQCYI------CEARGSYPHL 172

Query: 182 HAIAHIP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             I +IP      V + IGPEGG+   E  T     F  P+SLG RILR+ TA + A++L
Sbjct: 173 INIINIPLKNIKEVVVAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSL 231

Query: 237 VQAIC 241
           + A C
Sbjct: 232 IAAAC 236


>gi|254369089|ref|ZP_04985101.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122039|gb|EDO66179.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 242

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 14/223 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IK+   + +IQK+ ++G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++ 
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIIN 238


>gi|88798495|ref|ZP_01114079.1| hypothetical protein MED297_05539 [Reinekea sp. MED297]
 gi|88778595|gb|EAR09786.1| hypothetical protein MED297_05539 [Reinekea sp. MED297]
          Length = 245

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 35/233 (15%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTK-QSDVQY 84
           + +L  VLR+K+G +I +FNG+   + ++++ VGK   S R   +  +  + +  + +  
Sbjct: 27  FQHLIKVLRLKDGADIQVFNGRGDRFRAELTEVGKKQASARLLEQLDATPEPQLHTHLGL 86

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQC 138
           + S  K +R DY +QK+ E+G+ +I P+ + +       +     M   +    SA EQC
Sbjct: 87  VMS--KGDRFDYALQKATELGVTSITPLTSEHCDLRLNAERQTKKMAHWQGVIESACEQC 144

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--------V 190
              T+P +YP   L   ++  D + Q++              LH  A  P+        V
Sbjct: 145 YRDTVPILYPVRALRDWVEIQDSDVQLI--------------LHTAAQAPDWPEESPQSV 190

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + LIGPEGG   +E +      F++   LGPRILR++TA V  ++L+Q   GD
Sbjct: 191 SFLIGPEGGLSDDEVQWSLKNDFMS-WQLGPRILRTETAPVVMLSLLQNKWGD 242


>gi|331015976|gb|EGH96032.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 275

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +V+   R   Q +     ++   + +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVL-------HPV 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGFHA-ARLGPRVLRTE 222


>gi|77163661|ref|YP_342186.1| hypothetical protein Noc_0123 [Nitrosococcus oceani ATCC 19707]
 gi|254435009|ref|ZP_05048516.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani
           AFC27]
 gi|76881975|gb|ABA56656.1| 16S rRNA m(3)U-1498 methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207088120|gb|EDZ65392.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani
           AFC27]
          Length = 243

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 29/249 (11%)

Query: 12  VDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           V FPL +      S D+    Y+  VLR++ G  + LF+G+  E+ + +  + K    KV
Sbjct: 6   VYFPLSLSIGSSVSLDERALQYVIRVLRLRLGAQLRLFDGRGAEYQAVLETIEKRA-VKV 64

Query: 70  EYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-- 118
               R +       ++ SP+         +  R+DY +QK+VE+G+  I P++T  +   
Sbjct: 65  RILERIE------HHVESPLHIILGQGISRGERMDYALQKAVELGVSRIIPLLTERSAVN 118

Query: 119 -NTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            +      R+R +    ISA EQC    +P +  P  L   L++ DH    V  D    S
Sbjct: 119 LSAERAEKRLRHWQGVIISACEQCGRNYIPPVDTPRPLADFLRD-DHRGLAVLLDPR--S 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              L+ L  +     + +LIGPEGG +  E +      F+  + LGPRILR++TA VAA+
Sbjct: 176 RRPLKAL-PLPLDNRLIVLIGPEGGLNKGEAKQAQQADFIG-VCLGPRILRTETATVAAL 233

Query: 235 ALVQAICGD 243
             +Q + GD
Sbjct: 234 TALQLLWGD 242


>gi|291615399|ref|YP_003525556.1| hypothetical protein Slit_2944 [Sideroxydans lithotrophicus ES-1]
 gi|291585511|gb|ADE13169.1| protein of unknown function DUF558 [Sideroxydans lithotrophicus
           ES-1]
          Length = 245

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 12/244 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R +   PL + T  +   +  H+ + VLR++ GD + +F+G      + I+ +       
Sbjct: 5   RFYCPPPLPLATNFELPPEAAHHASRVLRLRVGDAVQIFDGLGNALDATINAINGKHVLL 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQ-NT 120
              Q+    ++S +    +     + ++D+++QK+ E+G   I PV     + R +    
Sbjct: 65  GNLQTFMGQQESGLHIALAQAMCTSEKMDWVVQKATELGAAEIIPVQTLRSVARLSSPRA 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +  R   +SA EQC   TLP +  P  L   L++  H     F     G+ N   +
Sbjct: 125 EKRAEHWRNVAVSACEQCGRNTLPQLQTPQELGTWLEDVRHTAGGKFILLPGGAINLQSQ 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                      +LIGPEGG+ ++E        F+ P+ LGPR+LR++TAA+A +A +Q +
Sbjct: 185 PRPQGR---ATLLIGPEGGFTADEANIAQQAGFI-PILLGPRVLRTETAALAGIAALQTL 240

Query: 241 CGDW 244
            GD+
Sbjct: 241 WGDF 244


>gi|182626905|ref|ZP_02954639.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str.
           JGS1721]
 gi|177907755|gb|EDT70367.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str.
           JGS1721]
          Length = 250

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76
           T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K   SI+   +    ++
Sbjct: 14  THAKITGEDVKHIYKVLRVKAGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
           +  +   +   P K  ++D ++QK VE+G+  I P IT       +     +DR+    +
Sbjct: 74  SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189
            A +Q     +P +  P   + +L+  D    +V   E     G    +  +     I N
Sbjct: 133 EACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSIKN 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I++GPEGG+   E E L        ++LGPRILR++TA    ++L+Q   GD 
Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIITLGPRILRTETAGFTCISLIQYELGDL 246


>gi|260773596|ref|ZP_05882512.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           metschnikovii CIP 69.14]
 gi|260612735|gb|EEX37938.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           metschnikovii CIP 69.14]
          Length = 243

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 28/234 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM+ G ++ LF+G D E+ + IS + K  +  V+ Q R +      + 
Sbjct: 21  SDDAANHIGKVLRMQPGQSVTLFDGSDAEFPAVISEISKK-QLTVDIQQRIE------KS 73

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129
           I SP+         + +++++ IQKSVE+G+  I P+++         +     + + + 
Sbjct: 74  IESPLNLHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLDPKRFEKKLQQWQK 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I P   LE          ++        S N+L +      +  
Sbjct: 134 IAIAACEQCGRNIVPVIRPVMELEAWCAEPSQALKLNLHPRASYSINTLPE-----PVNK 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG   +E        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 189 VRLLIGPEGGLSEQEIAMTEQYHFAETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|182418451|ref|ZP_02949745.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666873|ref|ZP_04526858.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377833|gb|EDT75377.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237658072|gb|EEP55627.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 253

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 18/238 (7%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           G   G+   ++  VLR+ EG+ I+L N +  E+L KI+ + KS       Q      +SD
Sbjct: 16  GIIVGEDVKHIYKVLRLSEGEEIILNNCEGIEYLGKINSINKSEVIVDIIQKLDTNNESD 75

Query: 82  VQ-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAA 135
           ++ Y+F  + K  ++D ++QK  E+G+    P IT       +     +DR+    + A+
Sbjct: 76  IKIYLFQGLPKGQKMDLIVQKGTELGINEFIPTITDRVDVKLKGEFKKLDRLNRIALEAS 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGSENSLEKLHA----IAHI 187
           +Q     +P +      E  + N + N  +V       E  G +  ++KL      +++I
Sbjct: 136 KQSKRSIIPKVKEVINFEEAMLNLE-NMDLVIVPYENAENFGVKTLMKKLREEKEDLSYI 194

Query: 188 PNVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            NV I+IGPEGG+  +E KE  +   ++  ++LG RILR++TA   A AL+Q    D 
Sbjct: 195 HNVGIVIGPEGGFEEDEIKELSNRGAYI--VTLGRRILRTETAGFTATALIQYELSDL 250


>gi|56476009|ref|YP_157598.1| 16S ribosomal RNA methyltransferase RsmE [Aromatoleum aromaticum
           EbN1]
 gi|56312052|emb|CAI06697.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 241

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R F   PL    + +      H+   VLR+++GD ++LF+G+ GE  +++   G+ ++
Sbjct: 3   ISRFFFPCPLPDSGEIELPDALAHHALRVLRLRDGDPLVLFDGRGGELAARLQVRGRDAL 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119
             + EY +  +     +  + +     ++D+++QK+VE+G  A+ P      V+    + 
Sbjct: 63  AVRDEYHALERESPLSLVLVQALASGEKMDWIVQKAVELGTSALVPLQAERCVLKLSGER 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            H  +   R   ISA EQ     +P I P T L   L +     ++V          SL 
Sbjct: 123 AHKRVAHWRQVAISACEQSGRNRVPEIEPITGLREYLASAAVGSRLVLTPVEGRRLASLA 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +  A  H+     L+GPEGG+  EE     +   V P+ LGPR+LR++TA +AA+A +QA
Sbjct: 183 RPDAALHL-----LVGPEGGWSDEELAMCRAAGCV-PVGLGPRVLRTETAGLAAVAALQA 236

Query: 240 ICGDW 244
           + GD+
Sbjct: 237 LWGDF 241


>gi|161936292|ref|YP_131254.2| 16S ribosomal RNA methyltransferase RsmE [Photobacterium profundum
           SS9]
          Length = 243

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 44/253 (17%)

Query: 15  PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           P  + +QGK   S D  +++  V+RM+ G  +LLF+G D E+ + IS   K    +V+ Q
Sbjct: 9   PELLPSQGKVMLSDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK-NVEVDIQ 67

Query: 73  SRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            R++        I SP+         +  ++++ IQKSVE+G+  I P+I+        N
Sbjct: 68  CRNENS------IESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERC-GVKLN 120

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R        +   ++A EQC    +P I P   LE    +W   C    A+E  G + 
Sbjct: 121 AERFEKKLSQWQKIVVAACEQCGRNVIPEIRPVMKLE----DW---C----AEEYDGLKL 169

Query: 177 SLEKL--HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +L     ++I  +P     V +LIGPEGG  +EE        F   L LGPR+LR++T A
Sbjct: 170 NLHPRANYSINTLPEPVTKVRLLIGPEGGLSAEEISMTEQYKFDEIL-LGPRVLRTETTA 228

Query: 231 VAAMALVQAICGD 243
           + A+  +Q   GD
Sbjct: 229 MTAITALQVRFGD 241


>gi|121590723|ref|ZP_01678055.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153819149|ref|ZP_01971816.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227080679|ref|YP_002809230.1| hypothetical protein VCM66_0454 [Vibrio cholerae M66-2]
 gi|229507107|ref|ZP_04396613.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX
           330286]
 gi|298501000|ref|ZP_07010801.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121547454|gb|EAX57563.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126510294|gb|EAZ72888.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227008567|gb|ACP04779.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229355852|gb|EEO20772.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX
           330286]
 gi|297540248|gb|EFH76308.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 243

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|153826558|ref|ZP_01979225.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739650|gb|EDM53864.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 243

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLANITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|168204735|ref|ZP_02630740.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str.
           JGS1987]
 gi|169343763|ref|ZP_02864762.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|169298323|gb|EDS80413.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|170663617|gb|EDT16300.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str.
           JGS1987]
          Length = 250

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76
           T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K   SI+   +    ++
Sbjct: 14  THAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
           +  +   +   P K  ++D ++QK VE+G+  I P IT       +     +DR+    +
Sbjct: 74  SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189
            A +Q     +P +  P   + +L+  D    +V   E     G    +  +     I N
Sbjct: 133 EACKQSKRTVIPQVLEPMDFKGVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSIKN 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I++GPEGG+   E E L        ++LGPRILR++TA    ++L+Q   GD 
Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246


>gi|18311008|ref|NP_562942.1| hypothetical protein CPE2026 [Clostridium perfringens str. 13]
 gi|168208728|ref|ZP_02634353.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str.
           ATCC 3626]
 gi|168212937|ref|ZP_02638562.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE
           str. F4969]
 gi|18145690|dbj|BAB81732.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170712974|gb|EDT25156.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str.
           ATCC 3626]
 gi|170715557|gb|EDT27739.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE
           str. F4969]
          Length = 250

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76
           T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K   SI+   +    ++
Sbjct: 14  THAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
           +  +   +   P K  ++D ++QK VE+G+  I P IT       +     +DR+    +
Sbjct: 74  SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189
            A +Q     +P +  P   + +L+  D    +V   E     G    +  +     I N
Sbjct: 133 EACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKN 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I++GPEGG+   E E L        ++LGPRILR++TA    ++L+Q   GD 
Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246


>gi|153802600|ref|ZP_01957186.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124121863|gb|EAY40606.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 243

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKKVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|293609672|ref|ZP_06691974.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828124|gb|EFF86487.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 240

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L E+L  +     + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|169632941|ref|YP_001706677.1| hypothetical protein ABSDF1185 [Acinetobacter baumannii SDF]
 gi|169151733|emb|CAP00535.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 240

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +  +LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQAILFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + I   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPVDRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L   L + D    + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|262403905|ref|ZP_06080462.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586]
 gi|262349867|gb|EEY99003.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586]
          Length = 243

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITARVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|270158328|ref|ZP_06186985.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289163426|ref|YP_003453564.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498
           methyltransferase) [Legionella longbeachae NSW150]
 gi|269990353|gb|EEZ96607.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288856599|emb|CBJ10406.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498
           methyltransferase) [Legionella longbeachae NSW150]
          Length = 242

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 22/231 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S +   ++  VLRM+EG+++ LF G + E+ + I  V K     V    +  +++S +  
Sbjct: 21  SPEASQHVGVVLRMQEGEHLTLFCGDNREFDAIIETVKKKQVIVVVGSIKKVSRESPLTI 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT----------RYTQNTHYNMDRVRTYTI 132
             +    K  R+++++QK+VE+G+ +I P++T          R T+  H    + +   I
Sbjct: 81  HLAQAISKGERMEWVMQKAVELGVASITPILTERCVVKLDQERMTKKLH----QWQAIVI 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           +A EQ    ++P ++ P TL   L+      + +        +N   + +    + ++ +
Sbjct: 137 AACEQSGRNSVPQVHAPVTLSRYLEEIQAELKFILHP----GQNKTWRDYTF-KVADIVL 191

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           LIGPEGG   +E +      F  PLSLGPRILR++TAA+ A++++QA+ GD
Sbjct: 192 LIGPEGGLSEQEVQYTSKHGF-QPLSLGPRILRTETAAITALSVLQAVGGD 241


>gi|114048821|ref|YP_739371.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-7]
 gi|113890263|gb|ABI44314.1| protein of unknown function DUF558 [Shewanella sp. MR-7]
          Length = 243

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           R++   PL +  Q     D   ++  VLRM  G++I LFNG   ++L++I   G KS+  
Sbjct: 5   RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGNGNDYLAEIVDAGKKSVTV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119
           KV     +   +S +      +  + +R+++ IQKSVE+G+  I P+      +    + 
Sbjct: 65  KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   ISA EQ     +P + P   L+          ++          N L+
Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|260556741|ref|ZP_05828959.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260410000|gb|EEX03300.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 240

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + I   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L   L + D    + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPASKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|90580291|ref|ZP_01236098.1| hypothetical protein VAS14_20206 [Vibrio angustum S14]
 gi|90438593|gb|EAS63777.1| hypothetical protein VAS14_20206 [Vibrio angustum S14]
          Length = 225

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 40/240 (16%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  V+RM+ G  +L+F+G + E+ + I+   K    +VE QSR +        
Sbjct: 3   SDDAANHVGRVMRMQVGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVE------HS 55

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129
           I SP+         + +++++ IQKSVE+G+  I P+I+         +     +D+ + 
Sbjct: 56  IESPLDIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLDQWQK 115

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHI 187
             I+A EQC    +P I P   LE     W   C    A+E  G + +L     ++I  +
Sbjct: 116 IAIAACEQCGRNVVPTIRPVMKLE----QW---C----AEEYDGLKLNLHPRANYSINTL 164

Query: 188 P----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           P    NV +LIGPEGG  ++E        F   L LGPR+LR++T A+ A+  +Q   GD
Sbjct: 165 PTPVTNVRLLIGPEGGLSADEISMTEQYKFDEIL-LGPRVLRTETTAMTAITALQVRFGD 223


>gi|153216268|ref|ZP_01950361.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124114357|gb|EAY33177.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 243

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQTGQEVLLFDGLGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|330830726|ref|YP_004393678.1| hypothetical protein B565_3026 [Aeromonas veronii B565]
 gi|328805862|gb|AEB51061.1| hypothetical protein B565_3026 [Aeromonas veronii B565]
          Length = 243

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 32/236 (13%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           S D  +++  VLRM+ G  + LFNG   ++ + I+ VG KS+   ++          DVQ
Sbjct: 21  SEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKSVEVTID--------SCDVQ 72

Query: 84  YIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV------- 127
            + SP+         + +++D+ IQKSVE+G+  I P+ +          DR+       
Sbjct: 73  SVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERC-GVKLPADRLEKKREQW 131

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   ISA EQC    +P +  P  L+  L       ++        +E S+  L    H 
Sbjct: 132 QKVVISACEQCGRNVVPEVRMPIELDAWLAEETKELKLNLHPR---AEYSINTLPVPEH- 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             V +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 188 -GVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITALQCRFGD 241


>gi|258620733|ref|ZP_05715768.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586931|gb|EEW11645.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 243

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPSEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|229828427|ref|ZP_04454496.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM
           14600]
 gi|229793021|gb|EEP29135.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM
           14600]
          Length = 246

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 8/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++++FVD            G+   +L  V+R++ G+ + +      ++   +  V +   
Sbjct: 1   MQQVFVDARQVNDEIVTIQGEDARHLGRVVRIRPGEEVRVSVRGGRDYYGHVLMVDREEM 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
                +  + T+ +    +F  I K +R++ +I+K+VE+G+  I PV TRY       + 
Sbjct: 61  TVKLVEEAASTELAQKICLFQAIPKGDRMETVIEKAVELGVYEIVPVETRYCVVRLDEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSL 178
                +R +    +AA Q     +P I P T  +  L +  D +  ++  +   G + + 
Sbjct: 121 KARKRERWQAIAANAARQSKRSIIPRIAPVTPYQKALDDAGDADLVLLPYENARGMQATG 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L A+AH   + I IGPEGG+ ++E +       +  +SLG RILR+DTAA+AAM +V 
Sbjct: 181 EALTAVAHAGGIGIFIGPEGGFAADEIKAAQGKDNIRVISLGRRILRTDTAAIAAMTMVM 240

Query: 239 AIC 241
             C
Sbjct: 241 MAC 243


>gi|121635582|ref|YP_975827.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18]
 gi|120867288|emb|CAM11059.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18]
          Length = 241

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     +++S++ K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAARLSFLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|262376600|ref|ZP_06069828.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308310|gb|EEY89445.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 236

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 25/244 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           + R ++D  L I    + +   +H+   VLR + G++  LFNG+ GE+   ++ V  KS 
Sbjct: 1   MPRFYIDADLTIDVSLELTETVFHHWVKVLRAQVGESATLFNGQGGEYDVTLTEVAKKSA 60

Query: 66  RFKVEY---QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
              V      +R+   Q+ +  + S  K +R+DY IQK+VE+G+  I+ + + + +    
Sbjct: 61  TVSVNAFNPANRTPKFQALLGQVMS--KGDRMDYAIQKAVELGVSEIQLLTSDHCEMRLK 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCG 173
                  +D  +   I+A EQC +  +P I  P +LE  L     N ++V A   DET  
Sbjct: 119 YDRDQKKLDHWQGIAIAACEQCGLNIVPEILAPMSLEKWLNTELPNTKLVLAPNKDET-- 176

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  + A A + ++A+LIGPEGG    E    +   F+    +G R+LR++TA V A
Sbjct: 177 ------DVLADATL-DLALLIGPEGGLSEAEISAANQKGFLN-WCIGERVLRTETAPVVA 228

Query: 234 MALV 237
           ++++
Sbjct: 229 LSIL 232


>gi|254226308|ref|ZP_04919899.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621170|gb|EAZ49513.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 243

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGITTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|113969034|ref|YP_732827.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-4]
 gi|113883718|gb|ABI37770.1| protein of unknown function DUF558 [Shewanella sp. MR-4]
          Length = 243

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           R++   PL +  Q     D   ++  VLRM  G++I LFNG   ++L++I   G KS+  
Sbjct: 5   RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKSVTV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119
           KV     +   +S +      +  + +R+++ IQKSVE+G+  I P+      +    + 
Sbjct: 65  KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   ISA EQ     +P + P   L+          ++          N L+
Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|117921881|ref|YP_871073.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. ANA-3]
 gi|117614213|gb|ABK49667.1| protein of unknown function DUF558 [Shewanella sp. ANA-3]
          Length = 243

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           R++   PL +  Q     D   ++  VLRM  G++I LFNG   ++L++I   G KS+  
Sbjct: 5   RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKSVTV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119
           KV     +   +S +      +  + +R+++ IQKSVE+G+  I P+      +    + 
Sbjct: 65  KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   ISA EQ     +P + P   L+          ++          N L+
Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQQWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|332305394|ref|YP_004433245.1| hypothetical protein Glaag_1016 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172723|gb|AEE21977.1| protein of unknown function DUF558 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 242

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ-SRSQTKQSDV 82
           + D  +++A+VLR K G  ++LFNG   E+  +   V K  +R +++ + S S      +
Sbjct: 21  TSDASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRKVRVQIDAKLSISLESPLSI 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---------QNTHYNMDRVRTYTIS 133
                  + +R+D ++QKSVE+G+  I P+IT            Q  H    ++    I+
Sbjct: 81  HLGQGISRGDRMDLVLQKSVELGVTEITPLITERCGVKLDAQRWQKKHAQWQKI---IIA 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P ++ PT  +  +       ++        +E S    H       V +L
Sbjct: 138 ACEQCGRNVIPTLHMPTEFQAWVNQSTPALRLTLHPR---AEKSFR--HTAVGSDGVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+  +E        F T + LGPR+LR++TAA+ A++ +QAI GD
Sbjct: 193 IGPEGGFSDQELYQTEQGGFHT-VQLGPRVLRTETAAITAISALQAIYGD 241


>gi|121728575|ref|ZP_01681596.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674458|ref|YP_001215995.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O395]
 gi|229519855|ref|ZP_04409289.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM
           11079-80]
 gi|229530311|ref|ZP_04419699.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           12129(1)]
 gi|254291180|ref|ZP_04961976.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|261210046|ref|ZP_05924344.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341]
 gi|262167137|ref|ZP_06034851.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC27]
 gi|121629131|gb|EAX61574.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146316341|gb|ABQ20880.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|150422874|gb|EDN14825.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227012322|gb|ACP08532.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229332084|gb|EEN97572.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           12129(1)]
 gi|229343143|gb|EEO08127.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM
           11079-80]
 gi|260840811|gb|EEX67353.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341]
 gi|262024437|gb|EEY43124.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC27]
 gi|327483322|gb|AEA77729.1| Ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           LMA3894-4]
          Length = 243

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|229512531|ref|ZP_04402002.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae
           TMA 21]
 gi|229350424|gb|EEO15373.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae
           TMA 21]
          Length = 243

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITDRVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCSEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|312883853|ref|ZP_07743570.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368311|gb|EFP95846.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 243

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 44/242 (18%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQ 83
           S +   ++  VLRMK G  + LF+G   E+++ IS   K    +VE  QS  ++ +S+++
Sbjct: 21  SEEAAGHVGRVLRMKIGQELRLFDGSGSEFIATISSQSKK-NVEVEVKQSIERSAESNLK 79

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132
                +  + +++++ IQKSVE+G+  I P+I+   +     +D+ R            I
Sbjct: 80  LHLGQVISRGDKMEFTIQKSVELGVEVITPLIS---ERCGVKLDQKRFEKKLAQWQKIAI 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIA 185
           SA EQC    +P I P  +LE    NW            CG E    KL       ++I 
Sbjct: 137 SACEQCGRNRIPSIRPIMSLE----NW------------CGEEYDGLKLNLHPRADYSIN 180

Query: 186 HIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            +P     V +LIGPEGG    E +      F + + LGPR+LR++TAA+ A+  +Q   
Sbjct: 181 TLPTPVEQVKLLIGPEGGLSEAEIDMTQKYAF-SDILLGPRVLRTETAALTAITALQVRF 239

Query: 242 GD 243
           GD
Sbjct: 240 GD 241


>gi|89256081|ref|YP_513443.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica LVS]
 gi|115314557|ref|YP_763280.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica OSU18]
 gi|169656563|ref|YP_001428163.2| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290954533|ref|ZP_06559154.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312049|ref|ZP_06802864.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica URFT1]
 gi|89143912|emb|CAJ79131.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129456|gb|ABI82643.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|164551631|gb|ABU61207.2| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 242

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 119/223 (53%), Gaps = 14/223 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           SG+ Y+Y  ++LR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +
Sbjct: 21  SGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYI 80

Query: 83  QYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAA 135
             ++   IK+   + +IQK+ ++G+  I P+IT +T +          ++R     I+ +
Sbjct: 81  TNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGS 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IG
Sbjct: 141 EQCGRVFIPKIHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           PEGG+  +E    HS  F T ++LG RIL+++TA +  ++++ 
Sbjct: 197 PEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIIN 238


>gi|119475424|ref|ZP_01615777.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium
           HTCC2143]
 gi|119451627|gb|EAW32860.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium
           HTCC2143]
          Length = 241

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 15/222 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DVQYIFS 87
           H+L+ VLR+K G +++LFNG   ++   I+ +G KS+   ++ +    ++ S  +    +
Sbjct: 26  HHLSKVLRLKVGSDVILFNGDGYDYSGHINAIGKKSVGIYIDSREIKHSESSLKIHLGVA 85

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDIL 141
             K +R+D++IQKS E+G+  I P++T  T+               +   ISA EQ    
Sbjct: 86  VSKGDRMDWIIQKSTELGVDEITPLLTERTELKLKGDRKEKKQHHWQQIAISACEQSGRA 145

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            LP I     L   ++  +   + V    +    NS +       + +  +LIGPEGG  
Sbjct: 146 QLPSINRIQHLSEWIQTIEATRKFVLHHRSTALLNSNDD------VSSACLLIGPEGGL- 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           SE++  L        L LGPRILR++TA +AA++++Q   GD
Sbjct: 199 SEDEIALAEHYHFDALQLGPRILRTETAPLAAISILQHHWGD 240


>gi|262164080|ref|ZP_06031819.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           VM223]
 gi|262027608|gb|EEY46274.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           VM223]
          Length = 243

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVRLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|258625617|ref|ZP_05720499.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262172417|ref|ZP_06040095.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           MB-451]
 gi|258582119|gb|EEW06986.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|261893493|gb|EEY39479.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           MB-451]
          Length = 243

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|218778356|ref|YP_002429674.1| hypothetical protein Dalk_0499 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759740|gb|ACL02206.1| protein of unknown function DUF558 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 257

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 10/247 (4%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           +  +R +++       +   +G    +   VLR+ +GD ++L +    E++  I   G +
Sbjct: 2   AETRRFYIEPEQITGDRAFITGQDAKHAKKVLRLAKGDPVILLDNSGLEYMGVILSAG-A 60

Query: 65  IRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
              +VE Q R   +      +    + IKT+++D +++   E+GM   RP     +    
Sbjct: 61  RDMEVEIQDRRLGATESPLKIDLAMAMIKTSKMDKLLKGVTELGMHGWRPFYASRSVPKV 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176
           ++     DR +     A +QC+ + LP ++ P + E L   + +++  +VF +++     
Sbjct: 121 KDPEDRRDRWKKIAAEAVKQCERVRLPDVHAPVSFEELCAISAEYDLGVVFWEKSRTPFQ 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + +    +   +V ++IGPEGG+   E   L     V    LGPRILR++TAA+A+ AL
Sbjct: 181 QVLQSRLDSPPKSVLVVIGPEGGFEDHETARLEESGMVH-AGLGPRILRAETAALASCAL 239

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 240 IQAGFGD 246


>gi|332875286|ref|ZP_08443118.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6014059]
 gi|323518770|gb|ADX93151.1| hypothetical protein ABTW07_2727 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736543|gb|EGJ67538.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6014059]
          Length = 240

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L  ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLVTLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + I   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L   L + D    + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPTSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|262191080|ref|ZP_06049287.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT
           5369-93]
 gi|297580608|ref|ZP_06942534.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|262033056|gb|EEY51587.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT
           5369-93]
 gi|297535024|gb|EFH73859.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 243

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITDRVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|222112634|ref|YP_002554898.1| 16S ribosomal RNA methyltransferase rsme [Acidovorax ebreus TPSY]
 gi|221732078|gb|ACM34898.1| protein of unknown function DUF558 [Acidovorax ebreus TPSY]
          Length = 242

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
            VLR++ GD + LFNG+ GEW + ++++G+S ++ +V   S  + + +   ++   +  N
Sbjct: 27  QVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDVQVQVGSHSAVEREAARAVHLVVGMPAN 86

Query: 93  -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            R+D++++K+ E+G  +I+P+    +      +         +   ++A EQC    +P 
Sbjct: 87  ERMDWLVEKATELGAASIQPIAAARSVLKLSGERAAKRQQHWQAIAVAACEQCGRNRVPS 146

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAILIGPEGGYHSE 203
           ++ P +L   L+    +     A     S  S  +    A A    V +L GPEGG  ++
Sbjct: 147 VHAPLSLADWLRQPPADALAPDAARLLLSLRSGSRPLREAAAEAGAVWVLHGPEGGLTAQ 206

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231
           E++   +  F  P SLG R+LR++TA+V
Sbjct: 207 EEDAALAQGF-APASLGARVLRAETASV 233


>gi|225076881|ref|ZP_03720080.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens
           NRL30031/H210]
 gi|224951767|gb|EEG32976.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens
           NRL30031/H210]
          Length = 241

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG +G+    +  V +  R
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNG-NGKAYPALPEVLEKRR 58

Query: 67  FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V       T      ++  + +     R+D+ +QKSVE+G+  IRPVI+         
Sbjct: 59  ASVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R +   +SA EQ     +P + P TT    L+        +       S N 
Sbjct: 119 ERAEKRVERWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQLPQETTKLLM-----SLNR 173

Query: 178 LEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +KL  +      V  ++GPEGG+  +E++      F + ++LG R+LR++TA++AA+A 
Sbjct: 174 AQKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|292493337|ref|YP_003528776.1| hypothetical protein Nhal_3352 [Nitrosococcus halophilus Nc4]
 gi|291581932|gb|ADE16389.1| protein of unknown function DUF558 [Nitrosococcus halophilus Nc4]
          Length = 243

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL I +          ++  VLR++ G  + LF+G+  E+ + +  V K S
Sbjct: 2   RVPRIYSSLPLSIGSSVVLDERALQHVVRVLRLRAGAELWLFDGRGTEYRAVLETVEKRS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              ++ E   R+     D+       +  R+DY +QK+VE+G+  I P+ T  +   H +
Sbjct: 62  AEARILERMERNVESPLDIILGQGISRGERMDYALQKAVELGVSGIVPLFTERSA-VHLS 120

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R+       R   ISA EQC     P +  P +L   L +  H    V  D    S  
Sbjct: 121 GERLEKRLRHWRGVVISACEQCGRNYTPGVDTPRSLAAFLGDC-HAGLAVLLDPR--SHR 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ L +      + +LIGPEGG    E +      F+  +SLGPR+LR++TA VAA+  
Sbjct: 178 PLKTLPSPLG-KRLILLIGPEGGLSEVEVKEAQQAGFID-VSLGPRVLRTETATVAALTA 235

Query: 237 VQAICGD 243
           +Q + GD
Sbjct: 236 LQLLWGD 242


>gi|89074101|ref|ZP_01160600.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34]
 gi|89050037|gb|EAR55563.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34]
          Length = 225

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 40/240 (16%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  V+RM+ G  +L+F+G + E+ + I+   K    +VE QSR +        
Sbjct: 3   SDDAANHVGRVMRMQAGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVENN------ 55

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129
           I SP+         + +++++ IQKSVE+G+  I P+I+         +     +++ + 
Sbjct: 56  IESPLDIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLEQWQK 115

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHI 187
             I+A EQC    +P I P   LE     W   C    A+E  G + +L     ++I  +
Sbjct: 116 IAIAACEQCGRNVVPTIRPVMKLE----QW---C----AEEYDGLKLNLHPRAKYSINTL 164

Query: 188 P----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           P    N+ +LIGPEGG  +EE        F   L LGPR+LR++T A+ A+  +Q   GD
Sbjct: 165 PTPVTNLRLLIGPEGGLSAEEIGMTEEYKFDEIL-LGPRVLRTETTAMTAITALQVRFGD 223


>gi|85711779|ref|ZP_01042835.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145]
 gi|85694394|gb|EAQ32336.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145]
          Length = 249

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 14/244 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R+F   PL + +    S D + +   VLRM+EG  + LF   D  + + ++ V K S + 
Sbjct: 5   RIFHPEPLTVNSTVSLSDDAFQHTIKVLRMQEGQALELFCNDDFNYAAVLTSVAKKSAQV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           ++     + T+     ++   + + +R+D+ +QKSVE+G+ AI P+ +        N DR
Sbjct: 65  EITGAQLNSTESPLFVHLGQVVSRGDRMDFALQKSVELGVNAITPLFSERC-GVKLNGDR 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +       +   ISA EQ     +P + P   ++  +K      ++          N +E
Sbjct: 124 LEKKQQQWQKIVISACEQSGRSHVPIVLPAILVDDFVKTPFDGLRLTLDPYARVPLNQIE 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             +    I    ++IGPEGG+   E E      F  P+ LGPRILR++TAA+ A+A +Q 
Sbjct: 184 GANLAQRI---QLMIGPEGGFTDIEVEHARHHHF-KPIRLGPRILRTETAAMTALAAIQY 239

Query: 240 ICGD 243
             GD
Sbjct: 240 EFGD 243


>gi|110803459|ref|YP_699307.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
           SM101]
 gi|110683960|gb|ABG87330.1| RNA methyltransferase, RsmE family [Clostridium perfringens SM101]
          Length = 250

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76
           T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K   SI+   +    ++
Sbjct: 14  THAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
           +  +   +   P K  ++D ++QK VE+G+  I P IT       +     +DR+    +
Sbjct: 74  SNLNITLFQGMP-KAAKMDLIVQKCVELGVLEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189
            A +Q     +P +  P   + +L+  D    +V   E     G    +  +     I N
Sbjct: 133 EACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKN 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I++GPEGG+   E E L        ++LGPRILR++TA    ++L+Q   GD 
Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246


>gi|326561136|gb|EGE11501.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 7169]
          Length = 247

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 119/246 (48%), Gaps = 30/246 (12%)

Query: 7   LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL     G+  A  D   H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           KS   K++     +R+   ++ +  + S  + +R+DY IQK+ EMG+  I  + +   Q 
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117

Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            H   DR        ++  ++A EQC +  +P I  P     LL  W  NCQ        
Sbjct: 118 AHLKYDRDFKKIAHWQSVAVAACEQCGMNIVPNIIAP----ILLDEWVANCQDELKLVLA 173

Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            SEN  +  K+     +P N+++LIG EGG    E +      FV P  +G R+LR++TA
Sbjct: 174 LSENNPAFNKI-----LPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227

Query: 230 AVAAMA 235
            V A++
Sbjct: 228 PVVALS 233


>gi|169795277|ref|YP_001713070.1| hypothetical protein ABAYE1140 [Acinetobacter baumannii AYE]
 gi|184158858|ref|YP_001847197.1| hypothetical protein ACICU_02538 [Acinetobacter baumannii ACICU]
 gi|213158057|ref|YP_002320108.1| hypothetical protein AB57_2769 [Acinetobacter baumannii AB0057]
 gi|215482810|ref|YP_002325013.1| RNA methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301346012|ref|ZP_07226753.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
           baumannii AB056]
 gi|301510423|ref|ZP_07235660.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
           baumannii AB058]
 gi|301595608|ref|ZP_07240616.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
           baumannii AB059]
 gi|332850384|ref|ZP_08432704.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013150]
 gi|332871823|ref|ZP_08440246.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013113]
 gi|169148204|emb|CAM86067.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183210452|gb|ACC57850.1| uncharacterized protein conserved in bacteria [Acinetobacter
           baumannii ACICU]
 gi|213057217|gb|ACJ42119.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213988086|gb|ACJ58385.1| RNA methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730655|gb|EGJ61966.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013150]
 gi|332731152|gb|EGJ62452.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013113]
          Length = 240

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P  L   L + D    + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPIALHEWLNSSDLPVSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G RILR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRILRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|73542528|ref|YP_297048.1| hypothetical protein Reut_A2843 [Ralstonia eutropha JMP134]
 gi|72119941|gb|AAZ62204.1| Conserved hypothetical protein 46 [Ralstonia eutropha JMP134]
          Length = 249

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 16/223 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQS-DVQYIFSPIKT 91
            VLR+  GD I LF+G+ G   + +  +GK     +V  +  ++T+    V         
Sbjct: 31  QVLRLAPGDAITLFDGRGGSHAATLLDLGKRHALARVGERDNTETEPPFRVMLAQGLAGG 90

Query: 92  NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           +++D++I+K+VE+G+ AI+P      V+              +    +A EQC    LP 
Sbjct: 91  DKMDWLIEKAVELGVTAIQPLQAARSVVRLSGDRAQKRQAHWQALVEAACEQCGRNRLPA 150

Query: 146 IYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           + P T L+  L+      +++    AD++  +  +  ++  +A    V +LIGPEGG   
Sbjct: 151 VAPVTNLDTWLRAAGEGNRLLVSPRADQSLPAYAAANRVSLLAG--GVTLLIGPEGGLAP 208

Query: 203 EEKET-LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EE++  LH+    T +SLGPRILR++TA +A +A + A+ G +
Sbjct: 209 EEEDAALHA--GFTAVSLGPRILRTETAGLACLATLNALLGGF 249


>gi|168215653|ref|ZP_02641278.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC
           8239]
 gi|182382065|gb|EDT79544.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC
           8239]
          Length = 250

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76
           T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K   SI+   +    ++
Sbjct: 14  THVKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
           +  +   +   P K  ++D ++QK VE+G+  I P IT       +     +DR+    +
Sbjct: 74  SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189
            A +Q     +P +  P   + +L+  D    +V   E     G    +  +     I N
Sbjct: 133 EACKQSKRTVIPQVLEPMDFKEVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKN 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I++GPEGG+   E E L        ++LGPRILR++TA    ++L+Q   GD 
Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246


>gi|218767503|ref|YP_002342015.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
           Z2491]
 gi|121051511|emb|CAM07805.1| hypothetical protein NMA0528 [Neisseria meningitidis Z2491]
 gi|319409765|emb|CBY90071.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 241

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F T ++LG RILR++T A+AA+A +Q + GD+
Sbjct: 199 EQEEQQAFDAGFQT-VTLGKRILRTETVALAALAAMQTLWGDF 240


>gi|121596395|ref|YP_988291.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax sp. JS42]
 gi|120608475|gb|ABM44215.1| protein of unknown function DUF558 [Acidovorax sp. JS42]
          Length = 242

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 11/208 (5%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
            VLR++ GD + LFNG+ GEW + ++++G+S ++ +V   S  + + +   ++   +  N
Sbjct: 27  QVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDVQVQVGSHSAVEREAARAVHLVVGMPAN 86

Query: 93  -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            R+D++++K+ E+G  +I+P+    +      +         +   ++A EQC    +P 
Sbjct: 87  ERMDWLVEKATELGAASIQPIAAARSVLKLSGERAAKRQQHWQAIAVAACEQCGRNRVPS 146

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAILIGPEGGYHSE 203
           ++ P +L   L+    +     A     S  S  +    A A    V +L GPEGG  ++
Sbjct: 147 VHAPLSLADWLRQPPADALAPDAARLLLSLRSGSRPLREAAAQGGAVWVLHGPEGGLTAQ 206

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231
           E++   +  F  P SLG R+LR++TA+V
Sbjct: 207 EEDAALAQGF-APASLGARVLRAETASV 233


>gi|260549771|ref|ZP_05823988.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260407288|gb|EEX00764.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 240

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 117/240 (48%), Gaps = 16/240 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + I   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIESFNPANRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            D+ +        I+A EQC +  +P +  P +    L  W  + ++  +      E   
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPIS----LNEWLSSSELPVSKFVLAPEK-- 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E+   ++ I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 175 EQKDVLSGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233


>gi|309783107|ref|ZP_07677826.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA]
 gi|308918215|gb|EFP63893.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA]
          Length = 249

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R FVD PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + K  R
Sbjct: 3   LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINK--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                 + +    ++ +Y  +  +     +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 60  DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERAVVRLS 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   +    +A EQC    +P + P +TL    + W    +   A     S  
Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVAPVSTL----REWLAAARSTDAPRVLLSPR 175

Query: 177 SLEKLHAIA-------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + L   A           + +LIGPEGG   +E+    S  F+ PL+LG RILR+++A
Sbjct: 176 GTQSLTQWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + A+ G++
Sbjct: 235 ALVAVSALHAVLGEF 249


>gi|298369579|ref|ZP_06980896.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282136|gb|EFI23624.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 241

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88
           HVLR+K  + I+LFNG    + +++  + K      I  + E  + S    + VQ + S 
Sbjct: 27  HVLRLKPDEEIVLFNGDGKAYPARLGVLEKRRATAEILREEEADNESPLNITLVQAVSS- 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
               R+D+ +QKSVE+G+G IRPV++         +     + R +   +SA EQ    T
Sbjct: 86  --GERMDFTLQKSVELGVGEIRPVLSERCVVRLDGERAAKRVARWQEIVVSACEQSGRNT 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGGYH 201
           +P + P  + +  L+        +       S  + +KL+ I    +  I ++GPEGG+ 
Sbjct: 144 VPQVLPLVSYQEALRQMPSEKTKLLM-----SVRNAQKLNRITPSSDGLIFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             E++      F   ++LGPR+LR++TA++AA+A +Q + GD+
Sbjct: 199 ESEEQQAFGAGF-QAVTLGPRVLRTETASLAAIAAMQTLWGDF 240


>gi|262278363|ref|ZP_06056148.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258714|gb|EEY77447.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 240

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 16/240 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L +    + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGLTIQLTETVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIESFNPTNRSAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            D+ +        I+A EQC +  +P +  P +    L  W  + Q+  +      E   
Sbjct: 121 RDQKKLDHWQAIAIAACEQCGLNLVPEVLAPIS----LSEWLSSTQLPASKFVLAPEK-- 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 175 EQKDVLAGIQPELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233


>gi|294634386|ref|ZP_06712923.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685]
 gi|291092194|gb|EFE24755.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 20/248 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           + R++   PL I  +   S D  +++  VLRM  G  + LF+G +  + ++I S   KS+
Sbjct: 3   IPRIYHPQPLSIPGEVNLSDDAANHVGRVLRMGPGHALQLFDGSNRVFDAEIVSADKKSV 62

Query: 66  RFK---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           R +   V  ++R       +  + S  +  ++++ IQKS+E+G+  I P+I+        
Sbjct: 63  RVRLTAVHEENRESPLHLHLGQVMS--RGEKMEFTIQKSIELGVNVITPLISERC-GVRL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           + +R+       +   I+A EQC   +L  I P  TLE      D   ++        S 
Sbjct: 120 DAERLAKKQQQWQKIAIAACEQCGRNSLALIRPAMTLEAWCAEPDDGLRLNLHPRASASI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L +      +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ A+ 
Sbjct: 180 NTLPQ-----PLSRVRLLIGPEGGLSASEIAMTADYHF-TDILLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|240015737|ref|ZP_04722277.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA6140]
          Length = 241

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    N +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSENTRLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|193077877|gb|ABO12758.2| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978]
          Length = 240

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 18/241 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F          + +  + +   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENS 177
            D+ +        I+A EQC +  +P +  P +L   L + D    + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPEK------ 174

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E+   +A I P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A+++
Sbjct: 175 -EQKDVLAGIQPELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSI 232

Query: 237 V 237
           +
Sbjct: 233 L 233


>gi|319639002|ref|ZP_07993760.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102]
 gi|317399906|gb|EFV80569.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102]
          Length = 241

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG +G+    +  V +  R
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNG-NGKSYPALPEVLEKRR 58

Query: 67  FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V       T      ++  + +     R+D+ +QKSVE+G+  IRPVI+         
Sbjct: 59  ASVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + R +   +SA EQ     +P + P TT    L+            ET     S
Sbjct: 119 ERAEKRVARWQEIVVSACEQSGRNIVPRVLPLTTYAQALRQ--------LPQETAKLLMS 170

Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L +   ++ +      V  ++GPEGG+  +E++      F + ++LG R+LR++TA++AA
Sbjct: 171 LNRAQKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAA 229

Query: 234 MALVQAICGDW 244
           +A +Q + GD+
Sbjct: 230 IAAMQTLWGDF 240


>gi|87121181|ref|ZP_01077072.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121]
 gi|86163673|gb|EAQ64947.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121]
          Length = 244

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 19/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R++VD PL   +        + ++  VLR+K   +++LFNG+ G++ +K+  V K S 
Sbjct: 3   IPRIYVDLPLQESSVFDLPQASFQHVCKVLRLKNDYSLILFNGQGGQYQAKLINVEKRSA 62

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           + +V  YQ+        V    +  +  R+DY IQK+VE G+  I+P+ +   +    N 
Sbjct: 63  QVEVLNYQALENESPIKVTLGQTLSRGERMDYAIQKAVEAGVHRIQPLFSERCE-VKLNT 121

Query: 125 DRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +R+       +   ISAAEQ     +P +  P      L +W  NC+ +   +     +S
Sbjct: 122 ERLDKKIQHWQQIAISAAEQSGRGHVPEVLSPIN----LLDWTSNCKDML--KITMHHHS 175

Query: 178 LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + +  ++   +  V++LIGPEGG    E E      F  P++LG R+LR++TA V  + 
Sbjct: 176 AKPISEMSEPEDKAVSVLIGPEGGLTESEVEASIQHGF-QPVALGSRVLRTETAPVVILT 234

Query: 236 LVQAICGD 243
            +  + GD
Sbjct: 235 CINLLWGD 242


>gi|304316647|ref|YP_003851792.1| hypothetical protein Tthe_1189 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778149|gb|ADL68708.1| protein of unknown function DUF558 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 240

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 16/232 (6%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQS 80
           + +GD  H++  VLR K G  +++ NGK+   +S +     S+  K+  EY    ++  +
Sbjct: 12  RINGDDAHHIIDVLRFKIGTKLIISNGKNQYIVSILDIENSSVILKIIEEYNQVVESPIN 71

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
              Y   P K++++D +IQK  E+G+  I PV T ++      +N +  ++R +  ++ A
Sbjct: 72  ITLYQGLP-KSDKMDLIIQKCTEIGIKKIVPVETEFSTIKIKEKNIYNKINRWKKISLEA 130

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           ++Q     +P +  P   +  L++ +    C I +  ET      + K +  A   N+ +
Sbjct: 131 SKQSGRSIVPDVLVPVGFKDALESLNEFDLCLIPYEKETNMRLKDVLKKNFNAK--NICV 188

Query: 193 LIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            IGPEGG+   E E + ++ +   P++LGPRILR++TA +   +++    GD
Sbjct: 189 FIGPEGGFS--ENEIMAAIEYGAIPVTLGPRILRTETAGIVTSSIILYELGD 238


>gi|150390795|ref|YP_001320844.1| hypothetical protein Amet_3045 [Alkaliphilus metalliredigens QYMF]
 gi|149950657|gb|ABR49185.1| protein of unknown function DUF558 [Alkaliphilus metalliredigens
           QYMF]
          Length = 254

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 17/252 (6%)

Query: 7   LKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           + R FV  P  +  Q +     GD   ++  VLR+  GD + + +G+  E++ +I  + K
Sbjct: 1   MNRFFV-VPSQVNQQARTISIVGDDVKHIGKVLRLVVGDLVEVCDGQALEYIGRIDEISK 59

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             +   +E Q    T+      ++  I K  +++ +IQK+ EMG+  I PV+T  T    
Sbjct: 60  EQVTLSIEKQENIFTEPPIQVRLYQGIPKATKMELIIQKTTEMGISDIIPVMTDRTIVQF 119

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DET 171
              ++    ++R +     A++Q     +P I+ P T    L+  + N   V A   ++T
Sbjct: 120 NNEKDREKKVERWQKIADEASKQSKRGKIPRIHIPMTYTKALEACNENDLNVLAYEKEKT 179

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            G +  +  L  I  + ++ I IGPEGG+  +E E   S   V  ++LGPRILR++TA  
Sbjct: 180 MGLKALIASLVEITEVKSIGIWIGPEGGFTGKEIEKALSHD-VRSITLGPRILRTETAGF 238

Query: 232 AAMALVQAICGD 243
           A ++++    GD
Sbjct: 239 AVLSMLMYELGD 250


>gi|238754605|ref|ZP_04615959.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri
           ATCC 29473]
 gi|238707236|gb|EEP99599.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri
           ATCC 29473]
          Length = 243

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 20/248 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++   PL   T+   S D  +++  VLRM EG ++ LF+G +  + ++I +V K   
Sbjct: 3   IPRIYHPQPLSAHTELALSDDAANHVGRVLRMSEGHHLQLFDGSNQVFSAEIIHVDKKSV 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                ++  + ++S +      +  +  ++++ IQKS+E+G+  I P+   +++     +
Sbjct: 63  HVHLGEAALEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPL---FSERCGVKL 119

Query: 125 DRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           D  R            I+A EQC   TLP I     LE      D + ++        S 
Sbjct: 120 DGERLAKKIQQWQKIAIAACEQCGRNTLPEIREAMQLEAWCAEQDDSLKLNLHPRASNSI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L        +  V +LIGPEGG  ++E E      F T + LGPR+LR++T A+ A+ 
Sbjct: 180 NTLP-----LPVNRVRLLIGPEGGLTADEIEMTSHHGF-TDILLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|257095553|ref|YP_003169194.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048077|gb|ACV37265.1| protein of unknown function DUF558 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 254

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R     PL +  Q         +   VLR++ GD + LF G  GE+ ++I+ + + +R  
Sbjct: 6   RFHCPVPLAVGAQVDLPEVVAQHAVKVLRLRRGDAVTLFTGAGGEYSARIAGI-ERLRVS 64

Query: 69  VEYQSRSQTKQSD---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
           VE      T++     +  + +    +++D  +QK+VE+G+    PVI+R +      Q 
Sbjct: 65  VEILQWLPTERESPLSITLVQALQAGDKMDMTVQKAVELGVDRFVPVISRRSVVRLADQR 124

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNC-QIVFADETCGSENS 177
                +  R    ++ EQC    LP +  P +LE +L++       +++ A     S   
Sbjct: 125 ALRRAEHWRGVVAASCEQCGRNRLPEVAIPESLEHWLMRPPPPGVLRLLLAPVASYSLAM 184

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L    A  HI    +L+G EGG   EE   L +L     + LGPRILR++TA +AA+A +
Sbjct: 185 LSGPSADGHI---ELLVGAEGGLAPEEVR-LAALAGFLSVRLGPRILRTETAGLAALAAI 240

Query: 238 QAICGD 243
           Q + GD
Sbjct: 241 QFLWGD 246


>gi|261379381|ref|ZP_05983954.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703]
 gi|284797829|gb|EFC53176.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703]
          Length = 241

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG +G+    +  V +  R
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNG-NGKAYPALPEVLEKRR 58

Query: 67  FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V       T      ++  + +     R+D+ +QKSVE+G+  IRPVI+         
Sbjct: 59  ASVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + R +   +SA EQ     +P + P TT    L+            ET     S
Sbjct: 119 ERAEKRVARWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQ--------LPQETTKLLMS 170

Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L +   ++ +      V  ++GPEGG+  +E++      F + ++LG R+LR++TA++AA
Sbjct: 171 LNRAQKLSDVQPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAA 229

Query: 234 MALVQAICGDW 244
           +A +Q + GD+
Sbjct: 230 IAAMQTLWGDF 240


>gi|332531193|ref|ZP_08407106.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC
           19624]
 gi|332039300|gb|EGI75713.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC
           19624]
          Length = 248

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 50/233 (21%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS-DVQYIFSPIKT 91
            VLR++ GD + LFNG+ GEW + +  +G+ S+  +V++    + +   DV         
Sbjct: 31  QVLRLQPGDTLTLFNGRSGEWTATVLRMGRASVTVRVDHHHAVEREAPLDVHLAVGMPAN 90

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYT-----------QNTHYNMDRVRTYTISAAEQCDI 140
            R+D++++K+VE+G+ +I+P+ T  +           +  H+         I+A EQC  
Sbjct: 91  ERMDWLVEKAVELGVASIQPLQTERSVLRLSGERALKKQLHWQ-----GIAIAACEQCGR 145

Query: 141 LTLPFIY------------PPTTLEFLLKNWDHNC----QIVFADETCGSENSLEKLHAI 184
             LP ++            PP      + + D +C    Q++ +  + GS          
Sbjct: 146 NRLPPVHAVRPLQDVAAWSPPEVQRRFVLSLDDDCVPISQVLASRGSTGS---------- 195

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                V +L GPEGG    E++   +  F  P+SLG R LR++TA +AA+A++
Sbjct: 196 -----VLLLSGPEGGLSPTEEQAARAAGF-QPVSLGQRTLRAETAPLAALAVL 242


>gi|160873963|ref|YP_001553279.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS195]
 gi|160859485|gb|ABX48019.1| protein of unknown function DUF558 [Shewanella baltica OS195]
 gi|315266197|gb|ADT93050.1| protein of unknown function DUF558 [Shewanella baltica OS678]
          Length = 243

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++   PL I  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK     
Sbjct: 5   RIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKHVTV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                 + + +S +      +  + +R+++ IQKSVE+G+  I P+ +        N +R
Sbjct: 65  KLLSCEANSSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +       +   ISA EQ     +P + P   L           ++          N L+
Sbjct: 124 LEKKIQQWQKIVISACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|217969920|ref|YP_002355154.1| 16S ribosomal RNA methyltransferase RsmE [Thauera sp. MZ1T]
 gi|217507247|gb|ACK54258.1| protein of unknown function DUF558 [Thauera sp. MZ1T]
          Length = 246

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 17/227 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--S 87
           H+   VLR+++G+ ++LF+G  GE  ++++  GK++ F    ++R+  ++S ++ +   +
Sbjct: 25  HHALRVLRLRDGEAVVLFDGSGGEVDARLAVRGKAV-FARLGEARAVERESPLRIVLVQA 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
               +++D+++QK+VE+G+ AI+PV    +      +     +   +   I+A EQC   
Sbjct: 84  LASGDKMDWVVQKAVELGVHAIQPVQAERSVLRLAAERADKRVAHWQQVAIAACEQCGRN 143

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPE 197
            +P I P   L   L         V A     +    +     A  P     V +L+GPE
Sbjct: 144 RVPEIRPLQPLAHWLGAHRAAPGYVLAPGYVLAPGGAK---GFADEPEPKDEVHLLVGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG+ SE +           + LGPR+LR++TA +AA+A +QA  GD+
Sbjct: 201 GGW-SEGEMAAFDAAGCRRVRLGPRVLRTETAGLAAVAALQARWGDY 246


>gi|255318401|ref|ZP_05359634.1| RNA methyltransferase [Acinetobacter radioresistens SK82]
 gi|262378631|ref|ZP_06071788.1| RNA methyltransferase [Acinetobacter radioresistens SH164]
 gi|255304393|gb|EET83577.1| RNA methyltransferase [Acinetobacter radioresistens SK82]
 gi|262299916|gb|EEY87828.1| RNA methyltransferase [Acinetobacter radioresistens SH164]
          Length = 239

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L + T  + +   +H+   VLR + GD+  LFNG+ GE+ + ++ + K   
Sbjct: 1   MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
                 S    +      +   +  K +R+DY+IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  SVAIRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            D+ +        I+A EQC +  +P I PP  L   L+      ++V A      +N L
Sbjct: 121 RDQKKLDHWQAVVIAACEQCGMNRIPEILPPVPLTDWLQQNLPATRLVLAPNK-RQQNVL 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                     ++A+LIGPEGG    E +  +   F     +G RILR++TA V A++++
Sbjct: 180 TDAQT-----DLALLIGPEGGLSEAEIDMANHAGFKN-WCIGERILRTETAPVVALSIL 232


>gi|297539576|ref|YP_003675345.1| hypothetical protein M301_2406 [Methylotenera sp. 301]
 gi|297258923|gb|ADI30768.1| protein of unknown function DUF558 [Methylotenera sp. 301]
          Length = 244

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 14/245 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R F    L I    K S +   +    LR+  GD I LFNG   ++  ++  V KS +  
Sbjct: 5   RFFSTEDLVIGATVKLSENAATHATRALRLNAGDLIHLFNGDGFDYACELIVVKKSEVIA 64

Query: 68  KVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           K+   Q+R      ++  +      +R+DY IQK+VE+G+  I+P+ T  +      +  
Sbjct: 65  KINASQARDTESPLNITLLQGISSGDRMDYSIQKAVELGVKQIQPIATERSVVKLSAERA 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++  +   ISA EQC   T+P +  P TL     NW  +     A     +    ++
Sbjct: 125 EKRLEHWQNIVISACEQCGRATIPQVLAPKTL----ANWLSSNSASSATRILLNPIGAKR 180

Query: 181 LHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           L  +      + +LIG EGG    E     S  F + + LGPRILR++TA   A+A +Q+
Sbjct: 181 LAELDKPSGEIQLLIGAEGGLSQAEINLALSQDFQSVI-LGPRILRTETAGPTAIATLQS 239

Query: 240 ICGDW 244
           + GD+
Sbjct: 240 LWGDF 244


>gi|88859066|ref|ZP_01133707.1| putative RNA methyltransferase with a deep trefoil knot
           [Pseudoalteromonas tunicata D2]
 gi|88819292|gb|EAR29106.1| putative RNA methyltransferase with a deep trefoil knot
           [Pseudoalteromonas tunicata D2]
          Length = 243

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 30/233 (12%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  VLRM  GD + LFNG+ G++L++++ V K     V  Q  S  ++ DV+   
Sbjct: 23  DAAGHIGRVLRMSIGDKVCLFNGQGGQFLAELTEVSKK---GVNVQIES-FEEHDVE--- 75

Query: 87  SPIKT---------NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTY 130
           SP+K          +++D+ IQKSVE+G+  I P+ T        + DR+       +  
Sbjct: 76  SPLKIHLGQGISRGDKMDFTIQKSVELGVTEITPLFTERC-GVKLSGDRLEKKHQQWQKI 134

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+AAEQ     +  I+PP  LE  L       ++        +E+S++ +        +
Sbjct: 135 AIAAAEQSGRNFVTVIHPPIKLEQWLSQQSDELKLTLHPR---AEHSIKTITKPTE--GL 189

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             ++GPEGG+   E     +  F+  + LGPRILR++TAA+  ++ +Q   GD
Sbjct: 190 RFIVGPEGGFTDAEMLMTKNSGFID-IRLGPRILRTETAALTVLSALQLEFGD 241


>gi|241664175|ref|YP_002982535.1| hypothetical protein Rpic12D_2592 [Ralstonia pickettii 12D]
 gi|240866202|gb|ACS63863.1| protein of unknown function DUF558 [Ralstonia pickettii 12D]
          Length = 249

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R FVD PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + K  R
Sbjct: 3   LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINK--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                 + +    ++ +Y  +  +     +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 60  DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAVTPLQTERAVVRLS 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   +    +A EQC    +P + P +TL    + W    +   A     S  
Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVAPVSTL----REWLAAARSTDAPRVLLSPR 175

Query: 177 SLEKLHAIA-------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + L   A           + +LIGPEGG   +E+    S  F+ PL+LG RILR+++A
Sbjct: 176 GTQSLTQWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + A+ G++
Sbjct: 235 ALVAVSALHAVLGEF 249


>gi|110798700|ref|YP_696706.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
           ATCC 13124]
 gi|110673347|gb|ABG82334.1| RNA methyltransferase, RsmE family [Clostridium perfringens ATCC
           13124]
          Length = 250

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 12/235 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQ 76
           T    +G+   ++  VLR+K G+ +++ N +  E+L ++  V K   SI+   +    ++
Sbjct: 14  THATITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNE 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
           +  +   +   P K  ++D ++QK VE+G+  I P IT       +     +DR+    +
Sbjct: 74  SNLNITLFQGMP-KAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIAL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHAIAHIPN 189
            A +Q     +P +  P   + +L+  D    +V   E     G    +  +     I N
Sbjct: 133 EACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAMVNSIEDKDSIKN 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I++GPEGG+   E E L        ++LGPRILR++TA    ++L+Q   GD 
Sbjct: 193 VGIMVGPEGGFEESEIEALKE-KGAHIVTLGPRILRTETAGFTCISLIQYELGDL 246


>gi|152981289|ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp.
           Marseille]
 gi|151281366|gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 241

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +   PL I           H++  V+R+  GD+I LFNG+ GE+ + I+ + K  R
Sbjct: 1   MPRFYCPQPLAIGAVITLPDHVAHHI-QVVRLGSGDHITLFNGEGGEYTATITTIEKK-R 58

Query: 67  FKVE---YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
              E   +  R       V    +  + +++D++I+K+VE+G+ AI+P      V+    
Sbjct: 59  VTAEIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQRCVVRLSA 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M   +   ++A+EQ     L  +  P      ++  D + +I+ +     +E S
Sbjct: 119 ERAAKKMQHWQGVIVAASEQSGRNRLAALAEPVDFNQWVQQKDLHKRILLSPR---AEQS 175

Query: 178 LEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L    A  H P +VA++IGPEGG+ ++++E L        LS+GPR+LR++TA ++A+A 
Sbjct: 176 LSDW-ARHHPPQSVALMIGPEGGF-TDKEEDLALAQGALMLSMGPRVLRTETAGLSALAA 233

Query: 237 VQAICGD 243
           + A+ G+
Sbjct: 234 LNAVWGE 240


>gi|332799054|ref|YP_004460553.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
           sp. Re1]
 gi|332696789|gb|AEE91246.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
           sp. Re1]
          Length = 252

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS---KISYVGK 63
           + R FV   L I  Q   SG+  H++  VLR + GD I + +G + E +     I   G 
Sbjct: 1   MSRFFVFQDLNINDQITISGEDAHHIIRVLRYQTGDVIHISDGANTESIGVILDIDTQGP 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           S++ K+  +++ ++    +       K  + D+++QK+ E+G+    P+IT+ T      
Sbjct: 61  SVKLKIIEKNKVESISPYITLFQGLPKGEKFDWILQKNTEIGVSEFIPIITQRTVVNISP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGS- 174
               +  +R       AA+QC  + +P I    + +  L+       C I + +E   S 
Sbjct: 121 SKLGHRKNRWGKIVKEAAKQCMRMDIPKIGDVLSFDLALQEIKKYSLCIIPWENEKEISI 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            + ++ ++    I  +A+ IG EGG+  +E E   +   V P+SLGPRILR++TA + A 
Sbjct: 181 RHIIKDMNENKSISKIAVFIGSEGGFSKDEVEKAKAAGAV-PVSLGPRILRTETAGIVAC 239

Query: 235 ALVQAICGD 243
           +++    GD
Sbjct: 240 SVLMYEIGD 248


>gi|322417811|ref|YP_004197034.1| hypothetical protein GM18_0269 [Geobacter sp. M18]
 gi|320124198|gb|ADW11758.1| protein of unknown function DUF558 [Geobacter sp. M18]
          Length = 246

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 17/231 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           +G+ Y ++A VLR+K+G  + L +         I  VG K++  ++   S    ++  +Q
Sbjct: 19  TGELYRHMARVLRLKQGAEVELIDADGRRHAGVIEEVGAKALTVRITVSSAPPREEPGLQ 78

Query: 84  ---YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISA 134
              Y   P K  +LD ++QK  E+G+       A R V+    + T     R       A
Sbjct: 79  VTLYQGLP-KGEKLDLILQKCTELGVAEVVTFDAARSVVKLRGEKTASKQARYEKIVQEA 137

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSLEKLHAIAHIPNVAI 192
           A Q    T P +    TL+ +LK+  H  +++    +E     + L K  A     +VA+
Sbjct: 138 ARQSGRCTPPRVAIGGTLKEVLKDAGHTVKLLLWEGEEKTTLRDCLGKYEAP---ESVAV 194

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           ++GPEGG  +EE E   +  F TP++LG RILR++TA +A ++++Q   GD
Sbjct: 195 VVGPEGGLSAEEVEQALACGF-TPVTLGKRILRTETAGLAMISILQFHWGD 244


>gi|117617899|ref|YP_857627.1| hypothetical protein AHA_3127 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559306|gb|ABK36254.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 243

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 36/238 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           S D  +++  VLRM+ G  + LFNG   ++ + I+ VG KS+   ++        + D  
Sbjct: 21  SEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKSVEVTID--------RCDTH 72

Query: 84  YIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV------- 127
            + SP+         + +++D+ IQKSVE+G+  I P+ +          DR+       
Sbjct: 73  SVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERC-GVKLPADRLEKKREQW 131

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   ISA EQC   T+P +  P  L+  L    +  ++        S N+L        I
Sbjct: 132 QKVVISACEQCGRNTVPEVRMPMELDAWLAEETNELKLNLHPRAPYSINTLP-------I 184

Query: 188 P--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           P   V +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 185 PEHGVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITALQCRFGD 241


>gi|222053521|ref|YP_002535883.1| protein of unknown function DUF558 [Geobacter sp. FRC-32]
 gi|221562810|gb|ACM18782.1| protein of unknown function DUF558 [Geobacter sp. FRC-32]
          Length = 246

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R  VD       +   +G  Y ++A VLR+K+G  ++L +G+ GE+   I  +   S+
Sbjct: 1   MRRFIVDKRDIDDAEAVITGYLYRHMAKVLRLKQGTAVMLTDGEGGEYEGVIESIDSTSL 60

Query: 66  RFKVEYQSRSQTKQSDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPV-----ITRYT- 117
           R +V  +          Q  I+  + K ++L+Y++QK  E+G   I P      I R + 
Sbjct: 61  RVRVVRRETLMVDDGGPQITIYQGLPKGDKLEYILQKCTELGAAGIVPFAASRSIARISP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q +   +DR +     AA Q    T+P +     L  +L+   H+ +++  +E     N 
Sbjct: 121 QRSAGRVDRWQKIAAEAARQSRRATVPRVSLADDLSQVLQLAQHSVKLLLWEEE--KANL 178

Query: 178 L-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L E L  ++   ++ +LIGPEGG+  EE     S  F+ P+S+G RI+R++TA++  +++
Sbjct: 179 LRETLSGLSAPNDIGVLIGPEGGFSPEEAAAASSAGFI-PISMGRRIVRTETASLIILSI 237

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 238 LQYHWGD 244


>gi|268593084|ref|ZP_06127305.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131]
 gi|291311353|gb|EFE51806.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131]
          Length = 243

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I T      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLQINTTISLGDDAANHVGRVLRMTAGQKLELFDGSNQTFSAEITEATKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            F     S+   ++S +      +  +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  VFVHIENSQIDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P  TLE      D   ++        S N+
Sbjct: 122 ERLEKKLLQWQKIAIAACEQCGRNRIPEIRPVQTLEAWCTENDGAFKVNLHPRATESINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----TELKKVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRLGD 241


>gi|94311915|ref|YP_585125.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus metallidurans
           CH34]
 gi|93355767|gb|ABF09856.1| conserved hypothetical protein DUF558 [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SI 65
           R FVD  L   T  +   D       VLR+  GD I LFNG+ G   + ++ +GK   S 
Sbjct: 4   RFFVDAALAADTVLELP-DAVVRHVQVLRLAPGDAITLFNGQGGSHPATLTEIGKRHASA 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119
                  S ++T  + V         +++D++I+K+VE+G+ AI+P      V+    + 
Sbjct: 63  TLGTHDASEAETPFA-VTLAQGLAGGDKMDWLIEKAVELGVSAIQPLQAARSVVRLSGER 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSL 178
                   +    +A EQC    LP + P   LE  L +      ++  +     S   L
Sbjct: 122 ATKRQAHWQALIEAACEQCGRNRLPALAPVANLESWLTSVPATAARLALSPRASASLPEL 181

Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +    A     V +LIGPEGG   EE++      F+  +SLGPRILR++TA +  +A +
Sbjct: 182 AQAEREAWRAGGVTLLIGPEGGLSPEEEDRARRAGFIG-VSLGPRILRTETAGLTCLATL 240

Query: 238 QAICGDW 244
            AI G +
Sbjct: 241 NAILGGF 247


>gi|46914675|emb|CAG21452.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 225

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 42/241 (17%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  V+RM+ G  +LLF+G D E+ + IS   K    +V+ Q R++        
Sbjct: 3   SDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK-NVEVDIQCRNENS------ 55

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------R 128
           I SP+         +  ++++ IQKSVE+G+  I P+I+        N +R        +
Sbjct: 56  IESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERC-GVKLNAERFEKKLSQWQ 114

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAH 186
              ++A EQC    +P I P   LE    +W   C    A+E  G + +L     ++I  
Sbjct: 115 KIVVAACEQCGRNVIPEIRPVMKLE----DW---C----AEEYDGLKLNLHPRANYSINT 163

Query: 187 IP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +P     V +LIGPEGG  +EE        F   L LGPR+LR++T A+ A+  +Q   G
Sbjct: 164 LPEPVTKVRLLIGPEGGLSAEEISMTEQYKFDEIL-LGPRVLRTETTAMTAITALQVRFG 222

Query: 243 D 243
           D
Sbjct: 223 D 223


>gi|319427610|gb|ADV55684.1| rRNA base methyltransferase, RsmE [Shewanella putrefaciens 200]
          Length = 243

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++   PL I        D   ++  VLRM  G+NI LFNG   ++L++I   GK     
Sbjct: 5   RIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKHVTV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                 +   +S +      +  + +R+++ IQKSVE+G+  I P+ +        N +R
Sbjct: 65  KLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +       +   +SA EQ     +P I P   L           ++          N L+
Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPLIRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|255020274|ref|ZP_05292342.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970194|gb|EET27688.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus
           caldus ATCC 51756]
          Length = 246

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 16/224 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY-IFS 87
           H+L  VLR + G  + LF G   ++ +++    GK     V  ++R +   S +Q  ++ 
Sbjct: 26  HHLLRVLRGRPGQELTLFTGDGRDYPAELLGARGKQALLAVG-RARWRDTGSPLQCCLWL 84

Query: 88  P-IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
           P I+  R D+ +QK+ E+G  A++PV+ R++              R R   I+A EQ   
Sbjct: 85  PVIRAERWDWALQKATELGAWALQPVVCRHSLVPLAEARAPKRQQRWRDIVIAACEQSSA 144

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNVAILIGPEGG 199
             +P + P   L  L    + +  +V  D + G+  SL K L        +A+L GPEGG
Sbjct: 145 TRIPELRPAMALSELGPP-EVDLAVV-CDPSYGT--SLGKVLGTRRSARRIALLCGPEGG 200

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            H EE     SL F+    LGPRILR++TA++ A+ L Q   GD
Sbjct: 201 LHPEELAWAESLGFLG-AHLGPRILRAETASITALTLAQGFLGD 243


>gi|229525160|ref|ZP_04414565.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           bv. albensis VL426]
 gi|229338741|gb|EEO03758.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           bv. albensis VL426]
          Length = 243

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S ++L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEAMKLNLHPRAKYSIHTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITALQVRFGD 241


>gi|160915014|ref|ZP_02077227.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991]
 gi|158432813|gb|EDP11102.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991]
          Length = 266

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQ 83
           + +Q H+++HVLRM+E D + + + ++  + + + + GK +   ++ +    T+ +  + 
Sbjct: 37  NDEQAHHVSHVLRMRENDVVRIVDKENTMFFAHLLFEGKKVIAHLDQKIEDHTRNAVRIT 96

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD----RVRTYTISAAEQ 137
            +   IK  + DY++QKS E+G+  I P  +  T  +     MD    R     + A EQ
Sbjct: 97  LLQGMIKKEKWDYVLQKSAELGVDCIVPFTSSRTVVKAKEERMDKKLLRWNKILLEACEQ 156

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C   TL  +  P  L+   +       I + D    SE     L     I +V I IG E
Sbjct: 157 CKRSTLVDLKEPCLLKDAARYKSELNIIAYEDADATSEKLHRLLAKYPKISSVTIAIGSE 216

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           GG+  EE   L  + +   +SLG RILR++TAA+AA+
Sbjct: 217 GGFSKEEVSMLMEMGY-HRVSLGARILRAETAALAAI 252


>gi|187930070|ref|YP_001900557.1| hypothetical protein Rpic_3002 [Ralstonia pickettii 12J]
 gi|187726960|gb|ACD28125.1| protein of unknown function DUF558 [Ralstonia pickettii 12J]
          Length = 249

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R FVD PL   T          ++ HVLR+  GD+I LF+G   E+ +++  + K  R
Sbjct: 3   LPRFFVDTPLAPNTTVTLDESVTRHI-HVLRLAAGDDICLFDGSGYEFRARLDAINK--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITR---YTQN 119
                   +    ++ +Y  +  +     +++D++I+K+VE+G+ A+ P+ T       +
Sbjct: 60  DATASLVDATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERGVVRLS 119

Query: 120 THYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
               + RV+ +     +A EQC    +P + P  TL    + W    +   A     S  
Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPVVAPVATL----REWLATAKSTDAPRVLLSPR 175

Query: 177 SLEKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + L   A           + +LIGPEGG   +E+    +  F+ PL+LG RILR+++A
Sbjct: 176 GAQSLTQWAVQSRTRIVGSGIVLLIGPEGGLSPDEEALAEAAGFL-PLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + A+ G++
Sbjct: 235 ALVAVSALHAVLGEF 249


>gi|146296762|ref|YP_001180533.1| hypothetical protein Csac_1755 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410338|gb|ABP67342.1| protein of unknown function DUF558 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 242

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 15/227 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDG--EWLSKISYVGKS-IRFKVEYQSRSQTK-QSDV 82
           D  +++  VLR +EG+   + N  DG  ++ +KI  + K  I+  +E +  +Q + Q DV
Sbjct: 22  DDLNHVVKVLRKREGE---VLNLCDGIYDYKAKILEISKDKIKVAIEEKVLNQREPQKDV 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQ 137
                 IK  ++D +IQK+ E+G+  + PVI++      ++     + R +     A +Q
Sbjct: 79  FLFQCIIKNQKMDIIIQKATELGVKVLIPVISKRVVIDISEKEEKKIQRWQRIAKEAQKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C     P I  P  +  +    D    ++   E    EN    L   ++I  V ILIGPE
Sbjct: 139 CLRPYSPQIQRPIEIGRVKDFLDELDLLIIPYE---KENKKTYLDINSNINRVGILIGPE 195

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG+  +E E    L  V  +SLG RILRS+TAA++ +++V  + G+ 
Sbjct: 196 GGFEEDEIEIFKDLQKVRIVSLGKRILRSETAAISVISIVMHLLGEM 242


>gi|193211908|ref|YP_001997861.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobaculum parvum NCIB
           8327]
 gi|193085385|gb|ACF10661.1| protein of unknown function DUF558 [Chlorobaculum parvum NCIB 8327]
          Length = 247

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 17/229 (7%)

Query: 21  QGKAS--GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77
           +G+AS  G+++H+LA VLR +EGD + + +G        +  +GKS ++  +    R   
Sbjct: 15  RGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQGSIRNPRRVPP 74

Query: 78  KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130
            ++ V    S +K   R D+ ++K+ E+G+  I P+IT+ T +T          +R R  
Sbjct: 75  PETRVSVAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKKIDRKAERWRNI 134

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
             SAA Q     LP +  P + +  L+   ++ +++  +    SE +            V
Sbjct: 135 VHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLIAHE----SEEAFGPFEPAGQC--V 188

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              IGPEGG+ SE +    +   V P+S G  +LR++TA V A+ALV+A
Sbjct: 189 LFFIGPEGGF-SEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRA 236


>gi|188585812|ref|YP_001917357.1| protein of unknown function DUF558 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350499|gb|ACB84769.1| protein of unknown function DUF558 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 240

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 28/228 (12%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF--SP 88
           +  VLR+K GD ++L +GK G   S I+ +G+  I F++E +     K++ ++     S 
Sbjct: 1   MTRVLRLKIGDRVILLDGKGGACFSFINRLGEGQIEFELE-EPLIDNKEAPIRITLAQSL 59

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---------MDRVRTYTISAAEQCD 139
           IK +  ++++QK  E+G     P+I++ T+    N         + R R    +AAEQC 
Sbjct: 60  IKKDNFEFVLQKGTELGATEFYPLISQRTEVNLLNKSDKKVSKKLTRWREIVKNAAEQCQ 119

Query: 140 ILTLPFIYPPTTLEFLLKNW-------DHNCQIVFADETCGSENS-LEK-LHAIAHIPNV 190
              LP I+ P   E  LKN            +I+  ++    EN+ L+K L  I   P+ 
Sbjct: 120 RQVLPLIHYPVNFEKYLKNNNENSNNNGSRLKIMCHEQ----ENTPLKKVLKTIETPPSS 175

Query: 191 AI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           AI LIGPEGG+   E +      F + +S+GPRILR++TA + A++ +
Sbjct: 176 AIILIGPEGGFSHNEVDLAREQGF-SSVSMGPRILRAETAGIVAVSAI 222


>gi|308188039|ref|YP_003932170.1| UPF0088 protein yggJ [Pantoea vagans C9-1]
 gi|308058549|gb|ADO10721.1| UPF0088 protein yggJ [Pantoea vagans C9-1]
          Length = 243

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++   PL I ++     D  +++  VLRM  G  + LF+G +  + ++I++V K  R
Sbjct: 3   IPRIYHAGPLEIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKK-R 61

Query: 67  FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            KV   +S+   ++S +      +  +  ++++ IQKS+E+G+  I P+   +++     
Sbjct: 62  VKVSVTESQPDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I    TLE      D   ++        S
Sbjct: 119 LDAERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|134094087|ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas
           arsenicoxydans]
 gi|133737990|emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 241

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 19/225 (8%)

Query: 31  YLAH---VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE---YQSRSQTKQSDVQY 84
           ++AH   V+R+  GD I LFNG+ GE+ + IS + K  R   E   ++ R       +  
Sbjct: 21  HVAHHIQVIRLSAGDAITLFNGEGGEYTATISTIEKK-RVTAEIKIFEPREVELPYAITL 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
             +  + +++D++I+K+VE+G  A++P      V+    +     M   +   I+A+EQ 
Sbjct: 80  AQALPEASKMDWIIEKAVELGAHALQPLASQRCVVRLSAERAAKKMQHWQGIIIAASEQS 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197
               L  +  P          D + +I+ +     +E SL    A  H P +VA++IGPE
Sbjct: 140 GRNRLTTLAEPADFNQWATQQDLHVRIMLSPR---AEQSLSDW-ARHHPPQSVALMIGPE 195

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           GG+ +E++ET         LS+GPR+LR++TA +AA+A + A+ G
Sbjct: 196 GGF-TEKEETQAIANGALMLSMGPRVLRTETAGMAAIAALNAVWG 239


>gi|332285304|ref|YP_004417215.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7]
 gi|330429257|gb|AEC20591.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7]
          Length = 247

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +   PL   T  +      H+   VLR+K G +I+LF+G+ G++ + +   GK   
Sbjct: 6   ISRFYCATPLLPNTSIELPAALAHHAVRVLRLKTGSDIILFDGQGGQYTATLEITGKQAH 65

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQN 119
            ++  Y+         +  +      +++D++++K+VE+G      + A R V+    + 
Sbjct: 66  ARLGGYEPVEAELTGHITLVQGIPSGDKMDWVVEKAVELGASRIVPLAAQRSVLQLSGER 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSL 178
               +D  R  + +A+EQC    +  +  P TL+  +   D +   I+F     GS   L
Sbjct: 126 LRKRLDHWRRISQAASEQCGRNRIMEVASPLTLQQYIAASDADPASILFCHP--GSSRKL 183

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  A+    ++ +++GPEGG+ S+E+  L +   +TP+  G R+LR++TA +A +A V 
Sbjct: 184 AQ-AALEAGNSLTLVVGPEGGW-SDEELALMAKHQLTPVGFGARVLRTETAGLALIAAVS 241

Query: 239 AICG 242
            + G
Sbjct: 242 TLRG 245


>gi|325204878|gb|ADZ00332.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           M01-240355]
          Length = 241

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLADIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|309379533|emb|CBX21899.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 241

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|268317477|ref|YP_003291196.1| hypothetical protein Rmar_1925 [Rhodothermus marinus DSM 4252]
 gi|262335011|gb|ACY48808.1| protein of unknown function DUF558 [Rhodothermus marinus DSM 4252]
          Length = 239

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 15/224 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           D+ H+   VLR + GD +++ +G  G    ++  V +  ++ +V  ++R    +   +  
Sbjct: 22  DEAHHAVRVLRHRPGDEVIVVDGVGGWHRLRLELVDRQGVQGRV-LETRRDVGEPPYRLT 80

Query: 86  FSPI---KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
                  +T R +  ++K+VE+G+ AI P++T  T+ TH+  +R R   I+A +QC    
Sbjct: 81  IGLALLKQTARFETFLEKAVELGVAAIVPLLTARTERTHFRPERARRLLIAAMKQCGRSR 140

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEGGY 200
           LP ++ P     +L   D     +   E    +     +H +   P  +  +L+GPEGG+
Sbjct: 141 LPLLHAPRPFAEVLH--DPAALRLLCHEQ--PDRPRHPIHELLRRPVGDALVLVGPEGGF 196

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAA-VAAMALVQAICGD 243
            S+E     +  F T +SLG R LR++TAA VAA A +  IC D
Sbjct: 197 TSDEVLQAEAAGFQT-VSLGARRLRAETAALVAASAFL--ICQD 237


>gi|261393256|emb|CAX50882.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 241

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|59802454|ref|YP_209166.1| hypothetical protein NGO2160 [Neisseria gonorrhoeae FA 1090]
 gi|240079873|ref|ZP_04724416.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240127370|ref|ZP_04740031.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268596016|ref|ZP_06130183.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268685742|ref|ZP_06152604.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293397817|ref|ZP_06642023.1| ribosomal RNA small subunit methyltransferase E [Neisseria
           gonorrhoeae F62]
 gi|59719349|gb|AAW90754.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268549804|gb|EEZ44823.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268626026|gb|EEZ58426.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291611763|gb|EFF40832.1| ribosomal RNA small subunit methyltransferase E [Neisseria
           gonorrhoeae F62]
          Length = 241

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    N +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSENTKLIM------SINRACKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|308048318|ref|YP_003911884.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630508|gb|ADN74810.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 243

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 32/255 (12%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL    Q     D  +++  VLRM+ G  ++LFNG   ++ + I   GK  
Sbjct: 2   RVPRIYQPVPLAAGQQLALDDDGANHIGRVLRMQPGQAVMLFNGDGQQYPAIIDEAGKK- 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRY 116
              V  QS  Q       ++ SP+         +  ++++ IQKSVE+G  +I P+ +  
Sbjct: 61  NVLVTVQSVEQ------HHVESPLALHLGQVISRGEKMEFTIQKSVELGAASITPLWSER 114

Query: 117 TQNTHYNMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169
                   DR+       +   I+A EQC    +P + P   L+  +       ++    
Sbjct: 115 C-GVKLAGDRLDKKVAQWQKIAIAACEQCGRNVVPEVRPVMRLDQWMAEPFEGLKLNLHP 173

Query: 170 ETCGSENSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               S N+L E + A+       +LIGPEGG  +EE        F T + LGPR+LR++T
Sbjct: 174 RAEYSINTLPEPVQALR------LLIGPEGGLSAEEIAAAREFDF-TDILLGPRVLRTET 226

Query: 229 AAVAAMALVQAICGD 243
           AA+ AM  +Q   GD
Sbjct: 227 AALTAMTALQVRFGD 241


>gi|294142457|ref|YP_003558435.1| hypothetical protein SVI_3686 [Shewanella violacea DSS12]
 gi|293328926|dbj|BAJ03657.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 242

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 120/256 (46%), Gaps = 36/256 (14%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65
           + R++ D PL +        +   ++  VLRM +G+ I LFNG + ++L++ IS   K++
Sbjct: 3   IPRIYQDSPLAVGDTLALHDEAASHIGRVLRMSQGEQISLFNGSEHDYLAEIISASKKNV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+   S + ++     ++   I + +R+D+ IQKSVE+G+  I P+ +         +
Sbjct: 63  SVKILSSSINSSESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + + +   I A EQ     +P I P  +LE     W            CG +   
Sbjct: 123 RLEKKIHQWQKIVIGACEQSGRSRVPEIRPAMSLE----AW------------CGEQTDS 166

Query: 179 EKL-------HAIA----HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            KL       H I      +P V +LIGPEGG    E        F T + LGPR+LR++
Sbjct: 167 LKLNLHPRASHGIQGLSLDVPKVRLLIGPEGGLSETEILKTEQDKF-TDILLGPRVLRTE 225

Query: 228 TAAVAAMALVQAICGD 243
           TAA+ A++ +Q   GD
Sbjct: 226 TAALTAISALQLKFGD 241


>gi|183596310|ref|ZP_02958338.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827]
 gi|188023914|gb|EDU61954.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827]
          Length = 243

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I T      D  +++  VLRM  G  + LF+G +  + ++IS   K  
Sbjct: 2   RIPRIYHPEPLQINTTIALGDDAANHVGRVLRMTAGQKLELFDGSNQVFCAEISEATKKK 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S +      +  +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  VSVNIIDSHVDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDP 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +   I+A EQC    +P I P  +LE      D   ++        S N+
Sbjct: 122 ERLEKKRQQWQKIAIAACEQCGRNRIPQIRPVQSLEAWCAEEDGAFKVNLHPRATQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      A +  V +LIGPEGG   EE     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----AELNKVRLLIGPEGGLSEEEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRLGD 241


>gi|240114827|ref|ZP_04728889.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260441357|ref|ZP_05795173.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
           DGI2]
 gi|268600483|ref|ZP_06134650.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291044717|ref|ZP_06570426.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268584614|gb|EEZ49290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291011611|gb|EFE03607.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 241

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    N +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSENTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+  +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAITAMQTLWGDF 240


>gi|251779327|ref|ZP_04822247.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083642|gb|EES49532.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 254

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 16/239 (6%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           T+GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  VGK        +  S   +
Sbjct: 14  TEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIESVGKQEVIVNILEELSTNNE 73

Query: 80  SDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS 133
           S V   +F  + K  ++D ++QK  E+G+    P+IT       +     ++R+    + 
Sbjct: 74  SRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGEFKKLERLNRIALE 133

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLH----AIAH 186
           AA+Q     +P +      +  L        I+      E  G ++ +++L      +  
Sbjct: 134 AAKQSKRSIIPNVREVVEFDEALNELQRLDLILVPYENAENFGFKSLVKELSDKNVDLNS 193

Query: 187 IPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I N+ ++IGPEGG+   E ETL H   ++  ++LG RILR++TA   A +L+Q    D 
Sbjct: 194 IENIGVVIGPEGGFEESEIETLKHKGAYI--ITLGNRILRTETAGFVATSLIQYELADL 250


>gi|217972024|ref|YP_002356775.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS223]
 gi|217497159|gb|ACK45352.1| protein of unknown function DUF558 [Shewanella baltica OS223]
          Length = 243

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R+F   PL I  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK     
Sbjct: 5   RIFQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKHVTV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                     +S +      +  + +R+++ IQKSVE+G+  I P+ +        N +R
Sbjct: 65  KLLSCEVNLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +       +   +SA EQ     +P + P   L           ++          N L+
Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|299531912|ref|ZP_07045312.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni
           S44]
 gi|298720087|gb|EFI61044.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni
           S44]
          Length = 246

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 113/218 (51%), Gaps = 15/218 (6%)

Query: 34  HVLRMKEGDNILLFNGK------DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
            VLR + GD I LF G+       GE+ + I+++G+S +  +V+  S ++ +   V ++ 
Sbjct: 27  QVLRHQPGDVITLFEGQTGNGFTGGEFQATITHMGRSDVGVRVDSHSPAEREAERVVHLV 86

Query: 87  SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
             +  N R+D++++K+ E+G+ +I+PV+   +            ++R ++  +SA EQC 
Sbjct: 87  VGMPANERMDWLVEKATELGVASIQPVMAARSVLKLKGDRADKKIERWQSIAVSACEQCG 146

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              +P I+ P  L   L++ D              E +     A      V +L GPEGG
Sbjct: 147 RNQVPVIHAPLPLADWLRSKDAPATDTTRLVLSLREGNQPLRTAAGDAQTVWVLHGPEGG 206

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             ++E++      +  P SLG R+LR++TA+VAA++L+
Sbjct: 207 LTAQEEDWALEQGW-KPASLGSRVLRAETASVAALSLL 243


>gi|269101820|ref|ZP_06154517.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161718|gb|EEZ40214.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 243

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 44/253 (17%)

Query: 15  PLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           P  + +QG    S D  +++  V+RM+ G  I+LF+G + E+ + I+   K    +VE Q
Sbjct: 9   PESLPSQGSVMLSDDAANHVGRVMRMQAGQEIMLFDGSNAEFPAIITNASKK-NVEVEIQ 67

Query: 73  SRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            R +        I SP+         +  ++++ IQKSVE+G+  I P+I+        N
Sbjct: 68  QRVECS------IESPLNIHLGQVVSRGEKMEFTIQKSVELGVNTITPLISERC-GVKLN 120

Query: 124 MDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +R        +   I+A EQ     +P I P   LE    +W   C    A+E  G + 
Sbjct: 121 GERFDKKLAQWQKIAIAACEQSGRNVVPEIRPIMKLE----DW---C----AEEFSGLKL 169

Query: 177 SL--EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +L     ++I  +P    +V +LIGPEGG  S+E +   +  F   L LGPR+LR++TAA
Sbjct: 170 NLHPRAKYSINTLPTPVTDVRLLIGPEGGLSSDEIDMTENYNFDEIL-LGPRVLRTETAA 228

Query: 231 VAAMALVQAICGD 243
           + A+  +Q   GD
Sbjct: 229 MTAITALQVRFGD 241


>gi|152976741|ref|YP_001376258.1| hypothetical protein Bcer98_3037 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025493|gb|ABS23263.1| protein of unknown function DUF558 [Bacillus cytotoxicus NVH
           391-98]
          Length = 249

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+      T  +  GD  H++A V+RM  GD+I    NGK     +++I+  +V 
Sbjct: 1   MQRYFVEEKNVNGTTIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAACTIAEITNEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   +      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  STI---VEWIETTSELPILVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173
            + T   ++R++     AAEQ     +P +Y P + + LL   K +D  C + + +E   
Sbjct: 118 AKKTDKKVERLKKIVKEAAEQSHRTEIPHVYAPVSFKQLLEMSKEYD-VCLVAYEEEAKQ 176

Query: 174 SE--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E  N  + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKANFAKALTTIEPGQKLLIVFGPEGGLSEEEVSALREYKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|119503497|ref|ZP_01625580.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium
           HTCC2080]
 gi|119460559|gb|EAW41651.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium
           HTCC2080]
          Length = 243

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 34/231 (14%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSP 88
           H+L  VLR + GDNI LF G   +W   +S V K S+   V   S   T+        SP
Sbjct: 26  HHLVKVLRARVGDNITLFTGTGLDWQCCVSEVHKRSVTLSVGGASNPNTE--------SP 77

Query: 89  IKT---------NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTI 132
           +KT         +R D+ IQK+ E G+  I P+ +    +     DR+       +    
Sbjct: 78  LKTHLGLCLSKGDRFDWAIQKATEAGVATITPLYSDRV-DVKLPADRIPKRIAHWQQIVR 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           SA EQC    +P I+ PT     L NW    Q   ++      +    +  +    ++A+
Sbjct: 137 SACEQCGRAIVPQIFDPTP----LSNW---AQEQVSEAKLFLHHRESAMLPVTRPTSIAL 189

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           L+GPEGG    ++       F+  + LGPR+LR++TA + A++++ A  GD
Sbjct: 190 LVGPEGGLSETDRGYASDAGFIG-VKLGPRVLRTETAPLVALSILGARWGD 239


>gi|254804259|ref|YP_003082480.1| hypothetical protein NMO_0244 [Neisseria meningitidis alpha14]
 gi|304388478|ref|ZP_07370582.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091]
 gi|254667801|emb|CBA03770.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
 gi|304337534|gb|EFM03699.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091]
          Length = 241

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|319941739|ref|ZP_08016061.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804672|gb|EFW01539.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis
           3_1_45B]
          Length = 249

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 23/249 (9%)

Query: 9   RLFVDFPLCIKTQGKASGDQYH-------YLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           R F+D P    T     G ++        +    LR+  G+ + LFNG    W   + + 
Sbjct: 5   RFFIDAP----TDAFQLGGRFELPPKTARHAGRSLRLAAGEIVELFNGTGAAWSGPVGFS 60

Query: 62  GKSIRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVIT 114
             S   ++E+++ R+      +  + S +   + D++++K+VE G      M A R V  
Sbjct: 61  DASAWVELEHRTDRTAESPLAITLLQSLVAPEKADWIVEKAVEAGISEIIFMPAERSVTK 120

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +     + R+     SAAEQC    +P +    +LE   K    + + V A     S
Sbjct: 121 LAGERLEKRLARLTDIARSAAEQCGRNVVPLVRAVPSLEAGFKTVSGDVKFVLAPGADAS 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             S      +  + +VA  +GPEGG+ + E E L +     P  LGPR+LR++TA +AA 
Sbjct: 181 AAS----SMLPGLLSVAFAVGPEGGFSAREIE-LAAAHGWRPQLLGPRVLRTETAGLAAA 235

Query: 235 ALVQAICGD 243
              Q + GD
Sbjct: 236 IWAQTLVGD 244


>gi|255659202|ref|ZP_05404611.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM
           20544]
 gi|260848654|gb|EEX68661.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM
           20544]
          Length = 248

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 22/234 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   H+L HV+R K G  +++ + ++    +    +   ++  ++  +  + T +S +Q 
Sbjct: 18  GADAHHLMHVMRAKPGQEVIVVDDENQVARMEMTRFTSDAVTMELVERLDADT-ESPIQL 76

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAE 136
             +   +K +++D+++QK+VE+G+  I PV     + RY  +       R +     AA+
Sbjct: 77  GLAMCLLKADKMDFVVQKAVELGVNCIVPVASHNCVVRYDAKKAKQRQQRWQKIADEAAK 136

Query: 137 QCDILTLPFIYPPTTL-EFLLKNW---DHNCQIVFA---DETCGSENSLEKLHAIAHIPN 189
           QC    L  ++P  TL +FL   W   D + + +F    +E     + L++  +  ++  
Sbjct: 137 QCGRTVLVKVFPIETLKDFLSHAWYEDDMDSEFLFCYENEENVSVRDCLQRTTSERYM-- 194

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             +LIGPEGG+  EE E +        ++LGPRILR++TAAVA +++VQ   GD
Sbjct: 195 --LLIGPEGGFTLEEAEAVVKAGG-QSVTLGPRILRAETAAVAGLSIVQYEKGD 245


>gi|50085384|ref|YP_046894.1| hypothetical protein ACIAD2284 [Acinetobacter sp. ADP1]
 gi|49531360|emb|CAG69072.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 243

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 24/244 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L + T    +   +H+   VLR +  D  + FNG+ GE+   +  + K   
Sbjct: 1   MNRFYIEADLSVNTDTLLTESVFHHWVRVLRAQVNDCAIFFNGQGGEYQVTLQEINK--- 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI------KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQN 119
            K    S  Q    D    F  I      K +R+DY IQK+ E+G+  I+ + + R    
Sbjct: 58  -KNATVSIDQFNPVDRTPAFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMR 116

Query: 120 THYNMDRVR-----TYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCG 173
             Y+ D+ +     +  I+A EQC +  +P I PP +L E++      N ++V A E   
Sbjct: 117 LKYDRDQKKIDHWQSIAIAACEQCGMNRVPEILPPVSLNEWINTATLPNTKLVLAPEK-E 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +N L+   +      +A+LIGPEGG    E    ++  F+    +G R+LR++TA V A
Sbjct: 176 QQNVLKNAQS-----ELALLIGPEGGLSENEIIAANNKGFIN-WCIGERVLRTETAPVVA 229

Query: 234 MALV 237
           ++++
Sbjct: 230 LSIL 233


>gi|311278138|ref|YP_003940369.1| hypothetical protein Entcl_0810 [Enterobacter cloacae SCF1]
 gi|308747333|gb|ADO47085.1| protein of unknown function DUF558 [Enterobacter cloacae SCF1]
          Length = 243

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   P+ +  Q   S D  +++  VLRM  G  I LF+G +  + ++I +  K S
Sbjct: 2   RIPRIYHPEPVTVGQQMALSDDAANHVGRVLRMGIGQAIQLFDGSNQLFDAEIVHADKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +R  V  +  +  ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VRVTV-LKGETDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 AERLNKKIQQWQKIAIAACEQCGRNRIPEIRPAMDLEQWCAEQDDALKLNLHPRASASIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLPQ-----PVERVRLLIGPEGGLSADEIAMTARYRF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|300869308|ref|ZP_07113899.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC
           6506]
 gi|300332685|emb|CBN59097.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC
           6506]
          Length = 284

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 123/274 (44%), Gaps = 40/274 (14%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L+RL +        Q   +  Q HYL  VLR++EGD  L  +G+   WL++++ +   
Sbjct: 2   AQLQRLAIAPSQLQDRQIILTAQQQHYLYRVLRLREGDRFLAMDGRGHCWLAELAAIDAV 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
              + E   +S+    DV  + +  K N  D +++++VE+G+  I PV++  T  + +  
Sbjct: 62  AVIQEEVFIKSELN-VDVTLMAALPKGNGFDDVVRQAVELGVYCIIPVVSDRTLLKPSSQ 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-------TCGSE 175
            ++R +     AAEQ +   +P +  P +    ++N D   + +            C  +
Sbjct: 121 KIERWQRIAAEAAEQSERQIVPVMLEPVSFAVGVENCDRKYKYICVARGDSRHLLDCLLD 180

Query: 176 NSLEKLHA-----------------------------IAHIPNVAILIGPEGGYHSEEKE 206
           N +EK  +                             I + P++ I  GPEGG+  +E  
Sbjct: 181 NKIEKEESPITNHQSPIINSQLPITNYQLPITNHQSQITNYPSIVIATGPEGGWTEKEVT 240

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           T     F  P+SLG RILR+ TA + A++++  +
Sbjct: 241 TAIQFSF-QPVSLGSRILRAVTAPIVALSIIAGV 273


>gi|298715395|emb|CBJ28006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 301

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 92/292 (31%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKIS--------------------------------YVGK 63
           +R+++G+ + +F+G +GE+L+ ++                                   K
Sbjct: 1   MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEK 60

Query: 64  SIRFKVEYQSRSQTKQS-------------DVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110
            I  +VE  +R Q                 +++ +F+PI+  RL  +++K+VE+G   + 
Sbjct: 61  VIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLT 120

Query: 111 PVITRYTQNTHYN----MDRVRTYT-ISAAEQCDILTLPFIYPPTTLEFLLKNWD---HN 162
           PV+T  TQ    +    +DR+   T + AAEQC+ +T+P +  P TL   L++ +    +
Sbjct: 121 PVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSS 180

Query: 163 CQ---IVFADETCGSENSLEK---------------LHAIA-------------HI---- 187
           C    IV        + SL                 L A+A             H+    
Sbjct: 181 CDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSD 240

Query: 188 ----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                N A LIGPEGG+  +E  TL   PFV  +SLG  +LR++TAAV A++
Sbjct: 241 DNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALS 292


>gi|240013291|ref|ZP_04720204.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240120363|ref|ZP_04733325.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 241

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|126175723|ref|YP_001051872.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS155]
 gi|152999348|ref|YP_001365029.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS185]
 gi|304411141|ref|ZP_07392756.1| protein of unknown function DUF558 [Shewanella baltica OS183]
 gi|307306436|ref|ZP_07586179.1| protein of unknown function DUF558 [Shewanella baltica BA175]
 gi|125998928|gb|ABN63003.1| protein of unknown function DUF558 [Shewanella baltica OS155]
 gi|151363966|gb|ABS06966.1| protein of unknown function DUF558 [Shewanella baltica OS185]
 gi|304350334|gb|EFM14737.1| protein of unknown function DUF558 [Shewanella baltica OS183]
 gi|306910727|gb|EFN41155.1| protein of unknown function DUF558 [Shewanella baltica BA175]
          Length = 243

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++   PL I  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK     
Sbjct: 5   RIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKHVTV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                 +   +S +      +  + +R+++ IQKSVE+G+  I P+ +        N +R
Sbjct: 65  KLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +       +   +SA EQ     +P + P   L           ++          N L+
Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|300853987|ref|YP_003778971.1| hypothetical protein CLJU_c08010 [Clostridium ljungdahlii DSM
           13528]
 gi|300434102|gb|ADK13869.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 251

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 11/228 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-Y 84
           G+   ++  VLR+K GD I + N    E+L  I  + K        +  +   +S ++ Y
Sbjct: 20  GEDVKHIRKVLRLKCGDKININNCNGKEFLGAIEKIDKDEVVVNIIEELTLYNESKIKIY 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQC 138
           +F  + K+ ++D ++QK+VE+G+  I PV+T     +        +DR       A +QC
Sbjct: 80  LFQGLPKSGKMDLIVQKAVELGVYEITPVVTSRVVVKNDSGEFKKVDRWNKIAKEACKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAILIG 195
               +P +  P + + LL   ++   IV     +   G +  +  +   +++  +AI+IG
Sbjct: 140 KRSIIPKVNVPISFKELLSEGEYMDVIVVPYENESNTGIKKIVNSIKDKSNLEKIAIVIG 199

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+  +E + L ++      +LGPRILR++TA    ++L+    GD
Sbjct: 200 PEGGFEEQEIDELKNINSHIA-TLGPRILRTETAGFVCISLIMYELGD 246


>gi|239998111|ref|ZP_04718035.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240112081|ref|ZP_04726571.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240124855|ref|ZP_04737741.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492891|ref|ZP_05106062.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268593962|ref|ZP_06128129.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598139|ref|ZP_06132306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268683436|ref|ZP_06150298.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|226511931|gb|EEH61276.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547351|gb|EEZ42769.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268582270|gb|EEZ46946.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268623720|gb|EEZ56120.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|317165554|gb|ADV09095.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 241

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|120597613|ref|YP_962187.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. W3-18-1]
 gi|146294248|ref|YP_001184672.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella putrefaciens
           CN-32]
 gi|120557706|gb|ABM23633.1| protein of unknown function DUF558 [Shewanella sp. W3-18-1]
 gi|145565938|gb|ABP76873.1| protein of unknown function DUF558 [Shewanella putrefaciens CN-32]
          Length = 243

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++   PL I        D   ++  VLRM  G+NI LFNG   ++L++I   GK     
Sbjct: 5   RIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKHVTV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                 +   +S +      +  + +R+++ IQKSVE+G+  I P+ +        N +R
Sbjct: 65  KLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRC-GVKLNGER 123

Query: 127 V-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +       +   +SA EQ     +P + P   L           ++          N L+
Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|170078905|ref|YP_001735543.1| hypothetical protein SYNPCC7002_A2310 [Synechococcus sp. PCC 7002]
 gi|169886574|gb|ACB00288.1| conserved hypothetical protein (DUF558) [Synechococcus sp. PCC
           7002]
          Length = 236

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 22/224 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +Q HYL  VLR++ GD +++ NG    WL +++   + I+  +E Q   QT+      + 
Sbjct: 22  EQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTET-EEIQL-IESQ-HLQTECPIPVKLV 78

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
           + +  N  D +++   E+G+  I PVI+  T  + +   + R R     AAEQ +   +P
Sbjct: 79  AALPKNGFDEVVRCCTELGVTQIYPVISERTILKPSENKLKRWRKIATEAAEQSERAIVP 138

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADET--CGS-ENSLEKLHAIAHI--PNVAILIGPEGG 199
            I  P     LL+        +  ++T  CG+ E SL  L A+     P + +LIGPEGG
Sbjct: 139 KIETPQPFLQLLET-------LSPEQTYLCGAREKSLHLLDALPKTLPPEITVLIGPEGG 191

Query: 200 YHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +   E  +     +P V   SLG  ILR+ TA++ A+ALV + C
Sbjct: 192 WTETEIQQAIAKGMPVV---SLGNSILRAVTASITAIALVNSHC 232


>gi|167630502|ref|YP_001681001.1| hypothetical protein HM1_2440 [Heliobacterium modesticaldum Ice1]
 gi|167593242|gb|ABZ84990.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 254

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 17/234 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-YI 85
           ++  +L+ VLR++ GD +L F+G+  E+ + ++ +     F    +    ++++ ++ ++
Sbjct: 21  EESQHLSKVLRLRAGDAVLAFDGQGNEYEAIVAEINGDKAFLESLRPTGASREAPIRLWL 80

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
              + K  +++ +IQK+ E+G+  I PV+T  +             DR +     AA+QC
Sbjct: 81  LQGVAKGEKMELVIQKATELGVEKIFPVLTERSVVRFDAAKAKERRDRWQKIAREAAKQC 140

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEKLHAIAH---IPNV 190
               +P +  P     ++ +WD    ++   E    +      ++ K   + H      +
Sbjct: 141 WRTVIPEVQLPAAWAEVITDWDMTMPLLIPWEKEQGKGLKQVLTVLKKEGLLHDSPAKVI 200

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + IGPEGG  + E          T +SLGPRILR++TA +AA+A +    GDW
Sbjct: 201 GLAIGPEGGLTAAEVALARDRGART-VSLGPRILRTETAGIAALAAIMYELGDW 253


>gi|62129237|gb|AAX66940.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716087|gb|EFZ07658.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 259

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++ F      S N+L        +  
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINTLP-----LPVER 204

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257


>gi|269837717|ref|YP_003319945.1| hypothetical protein Sthe_1689 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786980|gb|ACZ39123.1| protein of unknown function DUF558 [Sphaerobacter thermophilus DSM
           20745]
          Length = 249

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R ++  PL        + +Q    A VLR+  G  ++LFNG DG+ +          R  
Sbjct: 7   RFYLPAPLPPGESVALTEEQARQAARVLRLAPGAPVVLFNG-DGQEVPGTIEDCAPRRVT 65

Query: 69  VEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
           V        +   V  I    + IK +R D+++QK  E+G+  I P+ T  T      + 
Sbjct: 66  VRLGEPRAGRSCPVPAIHVAQALIKADRFDWVVQKVTELGVARITPLATSRTVVSLPVER 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R +   + AAEQ   +T+P I  P TL+ LL        +V     C  EN   
Sbjct: 126 ARQRRERWQRIAVEAAEQSGRVTIPEIDEPATLDDLLPLMARIPALV-----CW-ENEAM 179

Query: 180 KLHAIAHIPNVA---ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            LH +  +P      ++IGPEGG+  EE          T +SLGP ILRS+TAA+AA+A
Sbjct: 180 PLHRV-RLPTAGPLLVVIGPEGGFTREEIAAAVDAGART-VSLGPLILRSETAALAALA 236


>gi|162139548|ref|YP_218021.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 243

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 16  TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 76  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++ F      S N+L        +  
Sbjct: 134 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINTLP-----LPVER 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 189 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|90412046|ref|ZP_01220053.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK]
 gi|90327024|gb|EAS43403.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK]
          Length = 225

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 42/241 (17%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  V+RM+ G  +LLF+G + E+ + IS   K    +V+ Q R++        
Sbjct: 3   SDDAANHVGRVMRMQVGQEVLLFDGSNAEFPAVISAASKK-NVEVDIQCRNENS------ 55

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------R 128
           I SP+         +  ++++ IQKSVE+G+  I P+I+        N +R        +
Sbjct: 56  IESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERC-GVKLNAERFEKKLSQWQ 114

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAH 186
              I+A EQC    +P I P   LE    +W   C    A+E  G + +L     ++I  
Sbjct: 115 KIVIAACEQCGRNVIPEIRPVMKLE----DW---C----AEEYDGLKLNLHPRANYSINT 163

Query: 187 IP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +P     V +LIGPEGG  +EE        F   L LGPR+LR++T A+ A+  +Q   G
Sbjct: 164 LPEPVSKVRLLIGPEGGLSAEEISMTEQYKFDEIL-LGPRVLRTETTAMTAITALQVRFG 222

Query: 243 D 243
           D
Sbjct: 223 D 223


>gi|307245046|ref|ZP_07527140.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854034|gb|EFM86245.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 243

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 37/239 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM EG+ I+LF+G +  + + +  VGK         S    ++S++  
Sbjct: 21  SEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQIIAKIDGSELDNRESNLPI 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136
               +  + +R+++ IQKSVE+G+  I P+      +    +     + + +   I+A E
Sbjct: 81  HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189
           QC    +P I P       L +W            C  ++ + KL       + I  +PN
Sbjct: 141 QCGRNEIPEIRPIMK----LTDW------------CKEQDDMLKLNLHPRAKYTIRQLPN 184

Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V      +LIG EGG  +EE E   +  F T + LG R+LR++TA++AA+  +Q   GD
Sbjct: 185 VPEAGVRLLIGSEGGLSAEEIEMTETQGF-TEVLLGKRVLRTETASLAAITALQVCFGD 242


>gi|237808014|ref|YP_002892454.1| hypothetical protein Tola_1251 [Tolumonas auensis DSM 9187]
 gi|237500275|gb|ACQ92868.1| protein of unknown function DUF558 [Tolumonas auensis DSM 9187]
          Length = 243

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ + PL +        D  +++  VLRM     I LFNG+ G++ + I+  GK  
Sbjct: 2   RVPRIYQNSPLNVGASVSLDDDAANHVGRVLRMVPDQEICLFNGQGGQYQAVITESGKKH 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117
           +  K+ ++ + S      +       + +++++ IQKSVE+G+  I P+      +    
Sbjct: 62  VTVKITDFSAHSVESPLSIHLGQVISRGDKMEFTIQKSVELGVNVITPLWSSRCGVKLQG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +++ +   ISA EQC   ++P I P  +LE  L       ++        S  +
Sbjct: 122 DRLDKKLEQWQKIAISACEQCGRNSVPLIRPVMSLENWLAEPTDELKLTLHPRAQYSVGT 181

Query: 178 L-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L E  H       V ++IGPEGG   +E        F   L LGPR+LR++TAA+ A+  
Sbjct: 182 LPEPTHG------VRLVIGPEGGLSDDEIALTEQYNFQEML-LGPRVLRTETAALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQCRFGD 241


>gi|188588657|ref|YP_001920258.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498938|gb|ACD52074.1| conserved surface protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 254

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 16/239 (6%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           T+GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  VGK        +  S   +
Sbjct: 14  TEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEVIVNILEELSTNNE 73

Query: 80  SDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS 133
           S V   +F  + K  ++D ++QK  E+G+    P+IT       +     ++R+    + 
Sbjct: 74  SRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGEFKKLERLNRIALE 133

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLH----AIAH 186
           AA+Q     +P +         L        I+      E  G ++ +++L      +  
Sbjct: 134 AAKQSKRSIIPNVREVVEFNEALNELQRLDLILVPYENAENFGFKSLVKELSDKNVDLNS 193

Query: 187 IPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I N+ ++IGPEGG+   E ETL H   ++  ++LG RILR++TA   A +L+Q    D 
Sbjct: 194 IENIGVVIGPEGGFEESEIETLKHKGAYI--ITLGNRILRTETAGFVATSLIQYELADL 250


>gi|226938941|ref|YP_002794012.1| hypothetical protein LHK_00007 [Laribacter hongkongensis HLHK9]
 gi|226713865|gb|ACO73003.1| Methyltrans_RNA domain containing protein [Laribacter hongkongensis
           HLHK9]
          Length = 240

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 18/220 (8%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
            VLR++  D ++LF+GK GEW +++  +G+ S R  VE     + +   +  +   + T 
Sbjct: 27  QVLRLRTDDPLILFDGKGGEWRARLVELGRRSARVHVEAFQAVERESPLLLSLAQGVSTG 86

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
           +R+++ +QK VE+G+   +P++T         +      +R      +A EQC    +P 
Sbjct: 87  DRMEFTLQKGVELGIAVFQPLVTERAMLKLAGERAERKHERWNDIVRAACEQCGRNRIPE 146

Query: 146 IYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSE 203
           I P  TL  FL +      + +    +   E  L    A    P  A +L GPEGG  S+
Sbjct: 147 IRPLMTLAAFLAQPRADAARFIL---SPAGERRLADYPA----PQAAWLLAGPEGGLSSQ 199

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E+    +  +  PL LGPR+LR++TAA+AA A +Q + GD
Sbjct: 200 EEAAAMAAGW-EPLRLGPRVLRTETAALAAAAAMQTLWGD 238


>gi|221133775|ref|ZP_03560080.1| hypothetical protein GHTCC_02514 [Glaciecola sp. HTCC2999]
          Length = 244

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R+FV  PL +        +  H+L +VLR+K+   ++LFNG   E+ ++I+ V K   
Sbjct: 3   ITRVFVPEPLIVDAALTIDNESAHHLINVLRVKQDQPLVLFNGDGNEYSAQINEVHKRKV 62

Query: 64  --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
             ++  K+   + S+      Q I    K +R++ ++QK+ E+G+  I P+IT+   N  
Sbjct: 63  IVNVDAKLAIGAESKFPIHLGQGI---AKGDRMETVLQKATELGVTEITPIITQRC-NVK 118

Query: 122 YNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            + +R            I A EQ     LP ++PP TL    K      +I F      +
Sbjct: 119 LSPERWAKKLVQWEKVIIGACEQSGRNVLPILHPPITLSEWCKQSTEQYRITFDPH---A 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +  L+ L    H   + ILIGPEGG+   E        F T + +GPR+LR++TAA+A++
Sbjct: 176 QQHLQALPVTQH--GIRILIGPEGGFSEAETYGAEQTGFNT-VKIGPRVLRTETAAIASI 232

Query: 235 ALVQAICGD 243
           A++QA  GD
Sbjct: 233 AIIQATYGD 241


>gi|261855041|ref|YP_003262324.1| hypothetical protein Hneap_0420 [Halothiobacillus neapolitanus c2]
 gi|261835510|gb|ACX95277.1| protein of unknown function DUF558 [Halothiobacillus neapolitanus
           c2]
          Length = 244

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+++D  L          ++ +YL +VLR+++G  + +F+G++ E  + +S +GK  
Sbjct: 2   RIPRIYLDAALAEGATLPLPAERLNYLKNVLRLRDGQALRVFDGQNHEADATLS-LGKRE 60

Query: 66  RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +  + + +S +Q   I +  K  ++D++IQK+VE+G+    PV T  +      
Sbjct: 61  GSLAIGRVAAHSVESPLQTHLIQAMGKGEKMDWVIQKAVELGVTRFTPVSTERSVVELKG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       R     I A EQ     LP + P  +LE  L   D   + V       +  S
Sbjct: 121 ERADKRHARFIDIAIGACEQSGRNFLPRVDPILSLEEALTQTDAALKWVLHP----NPGS 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L A+A   +VA+LIGPEGG    E E   +  F+ PL+LG R+LR++TA + A++++
Sbjct: 177 GAALPAVAP-DSVALLIGPEGGLSDHEVEAAIASGFM-PLTLGSRVLRTETAPIVALSVL 234

Query: 238 QAICGDWY 245
           Q   GD++
Sbjct: 235 QMQWGDFF 242


>gi|238787363|ref|ZP_04631162.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           frederiksenii ATCC 33641]
 gi|238724625|gb|EEQ16266.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           frederiksenii ATCC 33641]
          Length = 243

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELTLSDEAANHVGRVLRMGEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 62  LTVRLAEGQPEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC   T+P I     L       D + ++        S
Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNTVPEIREAMQLSDWCAEQDDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L      A +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|296124207|ref|YP_003631985.1| hypothetical protein Plim_3975 [Planctomyces limnophilus DSM 3776]
 gi|296016547|gb|ADG69786.1| protein of unknown function DUF558 [Planctomyces limnophilus DSM
           3776]
          Length = 251

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDV 82
           G + H+  HVLR+K G  I+LF+G      +++   G+    +R     Q  S       
Sbjct: 22  GSEAHHALHVLRVKTGQQIVLFDGHGNSATAEVIRPGRKDVGLRIVSGIQHSSPPALQLT 81

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDI 140
             + +P K +RLD+M++K  E+G+    P+IT+ +        ++R+R   ISA +Q   
Sbjct: 82  LLVATP-KGDRLDWMVEKLTELGVSRFVPLITQRSVVDPRESKLERLRQTVISACKQSHR 140

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-----GSENSLEKLHAIAHIP----NVA 191
             L  I  P  L   L   DH  Q   + +        S +S     A + +P    ++A
Sbjct: 141 DWLMEIEEPARLTDWLNRKDHPTQWFGSLQAPLVARKASNDSQPIASANSRMPLENTSLA 200

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ILIGPEGG+ SEE+  L +     P+ LG  +LR++TAA+A  +L 
Sbjct: 201 ILIGPEGGWTSEEESQLMT-SGARPVRLGQFVLRTETAAIALTSLA 245


>gi|187935444|ref|YP_001885097.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B
           str. Eklund 17B]
 gi|187723597|gb|ACD24818.1| conserved surface protein [Clostridium botulinum B str. Eklund 17B]
          Length = 254

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           ++GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  VGK        +  S   +
Sbjct: 14  SEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEVIVNILEELSTNNE 73

Query: 80  SDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS 133
           S V   +F  + K  ++D ++QK  E+G+    P+IT       +     ++R+    + 
Sbjct: 74  SRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGEFKKLERLNRIALE 133

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGSENSLEKLH----AIA 185
           AA+Q     +P +      +  L N      ++       E  G ++ +++L      + 
Sbjct: 134 AAKQSKRSIIPNVREVVEFDEAL-NELQGLDLILVPYENAENFGFKSLVKELSDKNVDLN 192

Query: 186 HIPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            I N+ I+IGPEGG+   E ETL H   ++  ++LG RILR++TA   A +L+Q
Sbjct: 193 SIENIGIVIGPEGGFEESEIETLKHKGAYI--ITLGNRILRTETAGFVATSLIQ 244


>gi|294338581|emb|CAZ86910.1| putative Ribosomal RNA small subunit methyltransferase E (16S rRNA
           m3U1498 methyltransferase) rsmE [Thiomonas sp. 3As]
          Length = 236

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 29/215 (13%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS---PIKT 91
           VLR+KEG+ + +F+G  GEW  ++    K++  +  +   +  +++DV+ + +   P   
Sbjct: 31  VLRLKEGEPVAVFDGTGGEWSGEV-IDPKTLLLRTHH---AVEREADVRVMLAVGMP-AN 85

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            R+D +++K+VE+G+ AI+P+ITR +      +     +   +   I+A EQC    +P 
Sbjct: 86  ERMDALVEKAVELGVAAIQPLITRRSVLRLQGERAQRRVAHWQGVAIAACEQCGRNRVPE 145

Query: 146 IYPPTTLEFLLKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
           + P  TL   L++        H C +        S  +   L   A   +  ++ GPEGG
Sbjct: 146 VAPVATLSDWLQHLGNDNARLHRCVL--------SPLATRALEPFAAGESGWMVSGPEGG 197

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              +E   L    F   +SLGPR+LR+DTA +AA+
Sbjct: 198 LGEDEIALLQRSGFQA-VSLGPRVLRADTAPLAAL 231


>gi|95928478|ref|ZP_01311225.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
 gi|95135268|gb|EAT16920.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
          Length = 261

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 11/247 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
            S ++R F        +      D  H+++ VLR++  D I+L +G+ G    +I  +  
Sbjct: 7   RSLMRRFFTPQITFTHSSADLPRDVAHHISTVLRLRTDDRIVLCDGRGGCAECRIDEISP 66

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           K  R         Q     V  I     +++LD ++QK+ E+G+  +RPV  +  Q    
Sbjct: 67  KRCRVTRLRHWLEQETALPVTLIQGLPHSDKLDLILQKTTELGVQQVRPVRCQRCQYPIA 126

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AA Q +   LP +    + E  L++ D + ++V  ++   ++ 
Sbjct: 127 PAKAARKLERWQKIVTEAARQSERSWLPEVAALCSFEEALQHCDADVKLVLWEQ---ADQ 183

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+++        VA+++GPEGG   EE        FV  + LGPRILR++TA +A MA+
Sbjct: 184 PLQRVLPEISPDRVAVVVGPEGGLAQEEVALAVEHGFVA-VGLGPRILRTETAGMALMAI 242

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 243 LQYQYGD 249


>gi|264680843|ref|YP_003280753.1| hypothetical protein CtCNB1_4711 [Comamonas testosteroni CNB-2]
 gi|262211359|gb|ACY35457.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 246

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 15/218 (6%)

Query: 34  HVLRMKEGDNILLFNGK------DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
            VLR + GD I LF G+       GE+ + I+++G+S +  +V+  S ++ + +   ++ 
Sbjct: 27  QVLRHQPGDVITLFEGQTGNGFTGGEFQATITHMGRSDVGVRVDSHSPAEREAARAVHLV 86

Query: 87  SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
             +  N R+D++++K+ E+G+ +I+PV+   +            ++R ++  +SA EQC 
Sbjct: 87  VGMPANERMDWLVEKATELGVASIQPVMAARSVLKLKGDRADKKIERWQSIAVSACEQCG 146

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              +P I+ P  L   L++ D              E +     A      V +L GPEGG
Sbjct: 147 RNQVPVIHAPLPLADWLRSKDAPATDATRLVLSLREGNQPLRTAAGDAQAVWVLHGPEGG 206

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             ++E E L       P SLG R+LR++TA+VAA++L+
Sbjct: 207 LTAQE-EDLALEQGWKPASLGSRVLRAETASVAALSLL 243


>gi|24372421|ref|NP_716463.1| hypothetical protein SO_0832 [Shewanella oneidensis MR-1]
 gi|24346395|gb|AAN53908.1|AE015528_1 conserved hypothetical protein TIGR00046 [Shewanella oneidensis
           MR-1]
          Length = 243

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 16/244 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67
           R++   PL +  Q     D   ++  VLRM  G+ I LFNG   ++L++ I    KS+  
Sbjct: 5   RIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKKSVTV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
           KV     +   +S +      +  + +R+++ IQKSVE+G+  I P+ +         + 
Sbjct: 65  KV-LSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLSGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   ISA EQ     +P + P   L+          ++          N L+
Sbjct: 124 LDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGINGLD 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +Q 
Sbjct: 184 LSHT-----RVRLLIGPEGGLSAEEIAMTETHQF-TDVLLGPRVLRTETASLTAITALQL 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|238798622|ref|ZP_04642097.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           mollaretii ATCC 43969]
 gi|238717508|gb|EEQ09349.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           mollaretii ATCC 43969]
          Length = 243

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG N+ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMSEGQNLQLFDGSNQVFTAEIIRVDKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 62  LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC   T+P I     L       D + ++        S
Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLSDWCAEQDDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        +  V +LIGPEGG   +E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----PSLNKVRLLIGPEGGLSVDEIAMTSHLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|58697158|ref|ZP_00372581.1| surface protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536534|gb|EAL59900.1| surface protein [Wolbachia endosymbiont of Drosophila simulans]
          Length = 182

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 69  VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
              +   Q +  +  Y++   +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ   +++P I PP     L  +   N   V  DET  ++  L+    +A I
Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVLKGKKNVAII 182


>gi|283835293|ref|ZP_06355034.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220]
 gi|291068451|gb|EFE06560.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220]
          Length = 243

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +Q     D  +++  VLRM  G  + LF+G +  + ++I++  K S
Sbjct: 2   RIPRIYHPEPLTSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61

Query: 65  IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----- 116
           +  KV   E   R       +  + S  +  ++++ IQKS+E+G+  I P+ +       
Sbjct: 62  VDVKVLNVELDDRESPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119

Query: 117 -TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S 
Sbjct: 120 DSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L        +  + +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+ 
Sbjct: 180 NTLP-----LPVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|207721568|ref|YP_002252007.1| hypothetical protein RSMK01827 [Ralstonia solanacearum MolK2]
 gi|206586729|emb|CAQ17314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 249

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 126/255 (49%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R ++D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +  R
Sbjct: 3   LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINR--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116
                 + +    ++ +Y+ +  +     +++D++I+K+VE+G+ AI P      V+   
Sbjct: 60  DATASLADATQPDTEARYVITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLS 119

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   +    +A EQC    +P + P TTL   L     + +        GS++
Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQS 179

Query: 177 -------SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                  S E++ +      + +LIGPEGG  S ++E+L       PL+LG RILR+++A
Sbjct: 180 LTQWAAQSRERIDST----GIELLIGPEGGL-SPDEESLAEAAGYLPLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + A+ G++
Sbjct: 235 ALVAVSALHAVLGEF 249


>gi|261823140|ref|YP_003261246.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium wasabiae
           WPP163]
 gi|261607153|gb|ACX89639.1| protein of unknown function DUF558 [Pectobacterium wasabiae WPP163]
          Length = 244

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S D  +++  VLRM  G ++ LF+G +  + ++I   GK S+R  V    + + K+S + 
Sbjct: 22  SDDAANHVGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKKSVRVSV-TAGKLEDKESPLH 80

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
                +  +  ++++ IQKS+E+G+  I P+++         +     + + +   ++A 
Sbjct: 81  LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKISQWQKIAVAAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ     +P + P  TLE      D+  ++        S N+L        +  V +LIG
Sbjct: 141 EQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSINTLP-----LPVDRVRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  + E  T+ S    T + LGPR+LR++T A+ AM  +Q   GD
Sbjct: 196 PEGGLTATEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242


>gi|254515811|ref|ZP_05127871.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR5-3]
 gi|219675533|gb|EED31899.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR5-3]
          Length = 245

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 19/225 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
            ++A  LRM+  D + LFNG   E    I+ + K  R  V     S+  +    D   I 
Sbjct: 26  RHIAKALRMRVEDTLCLFNGNGVEARGLITAIDKD-RVSVSLHDLSEPPRESPLDTVLII 84

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-------YTISAAEQCD 139
           +  + +R+D ++QK+ E+G+  I P+I+  T     + +R+           ISA EQC 
Sbjct: 85  ALSRGDRMDTVVQKATELGVSEIWPMISERT-GVRLDGERLSKKQEHWGRVAISACEQCG 143

Query: 140 ILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              LP I  P +  E L +    +  +       G+   L +        ++ +L+GPEG
Sbjct: 144 RNRLPLIAAPVSYAETLSRAAQQDASLRLVLHPLGNAEPLPE-----QCRSLIMLVGPEG 198

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G   +E        F T   LGPRILR++TA +A +A+ QA  GD
Sbjct: 199 GLSDQEVAGACDAGF-TAFQLGPRILRTETAPLAGLAVAQARWGD 242


>gi|163942067|ref|YP_001646951.1| hypothetical protein BcerKBAB4_4162 [Bacillus weihenstephanensis
           KBAB4]
 gi|229135136|ref|ZP_04263937.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196]
 gi|163864264|gb|ABY45323.1| protein of unknown function DUF558 [Bacillus weihenstephanensis
           KBAB4]
 gi|228648313|gb|EEL04347.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196]
          Length = 249

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK  E  +++I+  +V 
Sbjct: 1   MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P++ + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus
           nasoniae]
          Length = 245

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 18/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S +  ++++ VLRM  G NI LF+G +  ++ +I    K S++ ++   + +  ++S + 
Sbjct: 23  SDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEANKKSVKIQLGLATIA-NRESPLD 81

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISA 134
                +  +  ++++ IQKSVE+G+  I P+++    N   +  R+       ++  ISA
Sbjct: 82  LHLGQVISRGEKMEFTIQKSVELGVNIITPLLSERC-NVKLDPRRLSKKQQQWQSIAISA 140

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   +E      D   +I    +   S N+L     +A +  + +LI
Sbjct: 141 CEQCGRNKIPLIRPVMPIEAWCMEKDDALKINLHPKAQSSINTL-----LASVNKIRLLI 195

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG   +E     +  F T + LGPRILR++T A+ A+  +Q   GD
Sbjct: 196 GPEGGLSPDEIIMTTNYQF-TNILLGPRILRTETTALTAITALQVRFGD 243


>gi|67924875|ref|ZP_00518269.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501]
 gi|67853274|gb|EAM48639.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501]
          Length = 241

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 21/235 (8%)

Query: 21  QGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           QGK    + +Q HYL +VLR+KE    ++ +G +  +L K++     I  +++ Q+    
Sbjct: 13  QGKIINLTPEQKHYLKNVLRLKEDSEFIVIDGHNQTYLVKLNQDKGEIIKELKEQTELPI 72

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAA 135
               V  + +  K    D +I+   E+G+  I P+IT+ T  + + + ++R R     A 
Sbjct: 73  ---TVTLMIALPKNKGFDEVIRSCTELGVNTIIPIITKRTLLKPSSHKIERWRKIVKEAT 129

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKL--HAIAHIPN- 189
           EQ +   +P I  P +    L N D+   NC I      C +    + L  + +  I N 
Sbjct: 130 EQSERQIVPIIMEPMSFSEALNNMDNTNKNCYI------CVARKKAKHLLTYLLPEITNS 183

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V I  G EGG+  EE +    L F+ P++LG R+LR+ TA + A++LV A+   +
Sbjct: 184 VIIATGCEGGWTEEEIDQAEDLGFI-PVNLGSRVLRAVTAPLVALSLVGAVAEKY 237


>gi|85858413|ref|YP_460615.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB]
 gi|85721504|gb|ABC76447.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
          Length = 274

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 19/236 (8%)

Query: 17  CIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73
           C+ T G     S +  HY+  V RMK G  + LF+G+  E+ + I  +    R   E   
Sbjct: 23  CVLTVGDRCFLSEEHLHYVRSVQRMKPGSRLSLFDGRGQEYTAVIVDISAE-RALAEIID 81

Query: 74  RSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMD 125
           R     + + +  I +  K  ++D+++QK+ E+G+  I P  +  +      +      +
Sbjct: 82  RKSAPERPARITLIQALPKGQKMDFIVQKATELGVDEILPFSSERSIPRLPPEKARLKTE 141

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETC--GSENSLEKLH 182
           R R     AA QC    +P I    +   +LK  D +  +++F +E    G ++ L+K  
Sbjct: 142 RWRKIAGEAARQCRRSDVPNIPEIQSFAGILKAADADSLKMIFWEEESRQGLKDLLKKFS 201

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                   +IL+GPEGG  SEE E   +  FV+ +SLG +IL+ +TAAVA +A++Q
Sbjct: 202 GTCIF---SILVGPEGGLTSEEVEAATAAGFVS-VSLGKQILKLETAAVAILAIIQ 253


>gi|320355424|ref|YP_004196763.1| hypothetical protein Despr_3346 [Desulfobulbus propionicus DSM
           2032]
 gi|320123926|gb|ADW19472.1| protein of unknown function DUF558 [Desulfobulbus propionicus DSM
           2032]
          Length = 260

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 12/224 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           SG +  ++A VLR+K G  + LF+G+     + +  VGK          R++     V  
Sbjct: 19  SGAEARHIASVLRLKPGQAVELFDGQGQVCAAVLQTVGKHQVTARVTAIRNERPAVSVPL 78

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN---THYNMDRVRTYTISAAEQCD 139
             +   +K  ++D ++QK+ E+G  A  PV++ Y +N     +  +R +   I A +QC 
Sbjct: 79  TLAQCLLKGKKMDLLVQKATELGAQAFMPVVSAYCENHGDRDHQRERWQRIMIEACKQCH 138

Query: 140 ILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                 I P   L+      +DH    + A E  G   +      I H   + + +GPEG
Sbjct: 139 RSNPMAILPVARLDQADFTPYDHR---LAAWE--GERQAALPTRFIDHPGPLCLFLGPEG 193

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           G H ++   L    F TP SLG  ILR +TAA+AA+++VQ + G
Sbjct: 194 GLHDDDLRLLTQWSF-TPFSLGRHILRGETAALAALSIVQYLSG 236


>gi|116747664|ref|YP_844351.1| hypothetical protein Sfum_0215 [Syntrophobacter fumaroxidans MPOB]
 gi|116696728|gb|ABK15916.1| protein of unknown function DUF558 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 254

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
           KR FV+  +  +       D  H++ HVLR++ G+ + L +G  G WL  I   G  ++R
Sbjct: 4   KRFFVERAVPGEGTIDLGVDAAHHIEHVLRLRAGEEVELIDGVGGGWLGAIVEAGTGTVR 63

Query: 67  FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMG---AIRPVITRYTQNTHY 122
            ++  +     + S ++    +  + +R+D +++++ E+G+    A R   ++Y      
Sbjct: 64  VRITGRLGPPAESSLNLSLALAFSRADRMDLVLRQATEIGVNRFIAFRSRRSQYALTGRA 123

Query: 123 NMDRVRTYTISAAE---QCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGS 174
              R+  +   A E   QC  L +P +   + +  LL   +      N   + A E    
Sbjct: 124 AGKRLERWQRIAREAVCQCGRLNVPEMVILSDVRELLAKIEQRERSGNLLRILAFERGNG 183

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +  ++   A      V + +GPEGG+ SEE E L    F   + LGPRILR +TAA   +
Sbjct: 184 KGIVDLHRAFPQCTEVMVAVGPEGGWSSEEAELLTRNGF-HAVHLGPRILRLETAAAIVL 242

Query: 235 ALVQAICGD 243
           + VQ + GD
Sbjct: 243 SSVQLLWGD 251


>gi|304396754|ref|ZP_07378634.1| protein of unknown function DUF558 [Pantoea sp. aB]
 gi|304355550|gb|EFM19917.1| protein of unknown function DUF558 [Pantoea sp. aB]
          Length = 243

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++   PL I ++     D  +++  VLRM  G  + LF+G +  + ++I++V K  R
Sbjct: 3   IPRIYHAEPLDIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKK-R 61

Query: 67  FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            KV   +S+    +S +      +  +  ++++ IQKS+E+G+  I P+   +++     
Sbjct: 62  VKVSVTESQPDDHESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I    TLE      D   ++        S
Sbjct: 119 LDAERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|325135519|gb|EGC58137.1| hypothetical protein TIGR00046 [Neisseria meningitidis M0579]
          Length = 241

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 25/225 (11%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYV-----GKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           +VLR++  +NI LFNGK     ++++ +     G  I  +    + S    + +Q I S 
Sbjct: 27  NVLRVRPNENITLFNGKGKAHAARLTVLEKRRAGAEILHEETADAESPLNITLIQSISS- 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
              +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T
Sbjct: 86  --GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNT 143

Query: 143 LPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGG 199
           +P + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG
Sbjct: 144 VPPVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGG 196

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 197 WTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|254521669|ref|ZP_05133724.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
 gi|219719260|gb|EED37785.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
          Length = 245

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 22/230 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           +  ++L  V+R++EGD  +LFNG   ++ + ++  GK  ++ +++   R   +      +
Sbjct: 23  ETANHLVRVMRLREGDACVLFNGDGHDYSATLTVAGKREVQVRIDAVERVDNESPLAITL 82

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---------YTISAA 135
              I +  ++D ++QK+ E+G+ AI PV     + T   +D  R             SA 
Sbjct: 83  LQGIARGEKMDLILQKATELGVAAIIPV---NAERTEVKLDAARAEKRVAHWNNVVTSAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAIL 193
            Q     +P +  P +L         +   +  D          +L  +   P   + I 
Sbjct: 140 GQSGRARIPQVGSPLSLAQAAATLPADTLRLTLDP-----QGAHRLSTLDGAPTGGIVIA 194

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+   +++ L +  F   L LGPRILR++TA +AA+A +QA  GD
Sbjct: 195 IGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAALQARLGD 243


>gi|50122843|ref|YP_052010.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613369|emb|CAG76820.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 18/233 (7%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79
           + + S D  +++  VLRM  G ++ LF+G +  + ++I   GK S+R       + + K+
Sbjct: 18  EAELSDDAANHIGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKKSVRVSF-TAGKLEDKE 76

Query: 80  SDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTY 130
           S +      +  +  ++++ IQKS+E+G+  I P+++        + DR+       +  
Sbjct: 77  SPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERC-GVKLDADRMEKKISQWQKI 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            ++A EQ     +P + P  TLE      D+  ++        S N+L        I  V
Sbjct: 136 AVAACEQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSINTLP-----LPIDRV 190

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +LIGPEGG  + E  T+ S    T + LGPR+LR++T A+ AM  +Q   GD
Sbjct: 191 RLLIGPEGGLTATEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242


>gi|194100123|ref|YP_002003263.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
           NCCP11945]
 gi|240122667|ref|ZP_04735623.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268681265|ref|ZP_06148127.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|193935413|gb|ACF31237.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268621549|gb|EEZ53949.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 241

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRIRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRACKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|307132693|ref|YP_003884709.1| hypothetical protein Dda3937_00423 [Dickeya dadantii 3937]
 gi|313104178|sp|P37995|RSME_DICD3 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|306530222|gb|ADN00153.1| predicted protein [Dickeya dadantii 3937]
          Length = 244

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQ 83
           S D  +++  VLRM  G  + LF+G +  + ++I   GK    +V Y + +++ ++S + 
Sbjct: 22  SEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKK-NVRVRYAAGQTENRESPLH 80

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
                +  +  ++++ IQKS+E+G+  I P+++         +     + + +   I+A 
Sbjct: 81  LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDGERLEKKIAQWQKIAIAAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P  TLE      D+  ++        S N+L        +  + +LIG
Sbjct: 141 EQCGRNRVPEIRPVQTLESWCAEPDNGLKLNLHPRAAHSINTLP-----LPVSRIRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  ++E     +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 196 PEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242


>gi|251788143|ref|YP_003002864.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya zeae Ech1591]
 gi|247536764|gb|ACT05385.1| protein of unknown function DUF558 [Dickeya zeae Ech1591]
          Length = 244

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQ 83
           S D  +++  VLRM  G  + LF+G +  + ++I   GK    +V Y + +++ ++S + 
Sbjct: 22  SEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIIQAGKK-SVRVRYAAGQTENRESPLH 80

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
                +  +  ++++ IQKS+E+G+  I P+++         +     + + +   I+A 
Sbjct: 81  LHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGIKLDGERLEKKISQWQKIAIAAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P  TLE      D+  ++        S N+L        +  + +LIG
Sbjct: 141 EQCGRNRVPEIRPVQTLESWCAESDNGLKLNLHPRATQSINTLP-----LPVSRIRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  ++E     +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 196 PEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242


>gi|241759555|ref|ZP_04757658.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114]
 gi|241320112|gb|EER56473.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114]
          Length = 241

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG    + +    + K   
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRCA 59

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           S+R   E  + +++   ++  + +     R+D+ +QKSVE+G+  IRPVI+         
Sbjct: 60  SVRILREEATDNESP-LNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSG 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + R +   +SA EQ     +P + P  T    L+        +       S N 
Sbjct: 119 ERAEKRVARWQEIVVSACEQSGRNIVPKVLPLMTYAQALQQLPQETAKLLM-----SLNR 173

Query: 178 LEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +KL  +      V  ++GPEGG+  +E++      F + ++LG R+LR++TA++AA+A 
Sbjct: 174 AQKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGFQS-VTLGKRVLRTETASLAAIAT 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|212709359|ref|ZP_03317487.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM
           30120]
 gi|212688271|gb|EEB47799.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM
           30120]
          Length = 243

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++   PL I T      D  +++  VLRM  G  + LF+G +  + ++I+   K   F 
Sbjct: 5   RIYHPEPLQINTTISLCDDAANHVGRVLRMTAGQQLELFDGSNHIFNAEITEATKKNVFV 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
               S    ++S +      +  +  ++++ IQKSVE+G+  I P+++         +  
Sbjct: 65  RVLNSTLDDRESPLDIHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDGERL 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + + +   I+A EQ     +P I P  +LE      D   +I        S N+L  
Sbjct: 125 EKKLQQWQKIAIAACEQSGRNRIPVIRPVQSLEAWCAENDGAFKINLHPRASESINTLP- 183

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               A + +V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +Q  
Sbjct: 184 ----ADLKHVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITALQVR 238

Query: 241 CGD 243
            GD
Sbjct: 239 LGD 241


>gi|240117029|ref|ZP_04731091.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268602715|ref|ZP_06136882.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268586846|gb|EEZ51522.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 241

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTARLTVLEKH-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTRLIM------SINRACKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|83814115|ref|YP_446222.1| hypothetical protein SRU_2116 [Salinibacter ruber DSM 13855]
 gi|294508153|ref|YP_003572211.1| hypothetical protein SRM_02338 [Salinibacter ruber M8]
 gi|83755509|gb|ABC43622.1| conserved hypothetical protein TIGR00046 [Salinibacter ruber DSM
           13855]
 gi|294344481|emb|CBH25259.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 239

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 13/215 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++  +L  VLR + GD++ + +G  G + ++I +VG           R    + D+    
Sbjct: 22  EEARHLRTVLRGEAGDDMTVVDGDGGWYRARIDHVGPDQVVGTITDERDNVGEPDMDVTV 81

Query: 87  SP---IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           +     K +R +  ++K+VE+G   + P+ TR T+      +R+R   ++A +QC    L
Sbjct: 82  ALGILKKRSRFETFVEKAVELGARRVVPLRTRRTERDAIREERLRNVMVAAMKQCRRSRL 141

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVA---ILIGPEGG 199
           P +  P ++E LL       ++V     C   E S+    A A     A   +L+GPEGG
Sbjct: 142 PALAAPQSIEPLLAGDVGETRLV-----CHAGEESVPIQQAAADTRQRASALVLVGPEGG 196

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +   E E        TP+SLG R LR++TA +AA+
Sbjct: 197 FAPPEVEAAVEA-EATPVSLGARRLRAETAGIAAL 230


>gi|194366854|ref|YP_002029464.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas
           maltophilia R551-3]
 gi|194349658|gb|ACF52781.1| protein of unknown function DUF558 [Stenotrophomonas maltophilia
           R551-3]
          Length = 245

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 18/228 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           +  ++L  V+R++EGD  +LFNG   ++ + ++  GK  ++ +++      T+      +
Sbjct: 23  ETANHLVRVMRLREGDTCVLFNGDGHDYSATLTVAGKREVQVRIDAVQAIDTESPLAITL 82

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---------YTISAA 135
              I +  ++D ++QK+ E+G+ AI PV     + T   +D  R             SA 
Sbjct: 83  LQGIARGEKMDLILQKATELGVAAIVPV---NAERTEVKLDAARAEKRVAHWNNVVTSAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
            Q     +P + PP +L         +   +  D      + L  L A A    + I IG
Sbjct: 140 GQSGRARIPQVGPPLSLAQAAAALPVDTLRLTLDPQ--GAHRLSTLDA-APGGGIVIAIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+   +++ L +  F   L LGPRILR++TA +AA+A +QA  GD
Sbjct: 197 PEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAALQARLGD 243


>gi|317493538|ref|ZP_07951959.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918481|gb|EFV39819.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 243

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 18/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE---YQSRSQTKQS 80
           S +  +++  VLRM EG  I LF+G +  +++ I    K ++R KV+    + R      
Sbjct: 21  SEEAANHVGRVLRMSEGHEIQLFDGSNQVFVAHIVAASKKNVRVKVQSGVLEDRESPLHL 80

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134
            +  + S  +  ++++ IQKS+E+G   I P+I+         +     + + +   I+A
Sbjct: 81  HLGQVIS--RGEKMEFTIQKSIELGASIITPLISERCGVKLDAERMAKKLGQWQKIAIAA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   LE      D + ++        S N+L        +  V +LI
Sbjct: 139 CEQCGRNVIPEIRPTMLLEQWCAEQDDSLKLNLHPRANASINTLP-----LPVERVRLLI 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 194 GPEGGLSADEIAMTAGYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|325127441|gb|EGC50371.1| hypothetical protein TIGR00046 [Neisseria meningitidis N1568]
          Length = 241

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLADIRQ-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|15677755|ref|NP_274919.1| hypothetical protein NMB1925 [Neisseria meningitidis MC58]
 gi|7227182|gb|AAF42254.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254670885|emb|CBA07409.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|316985547|gb|EFV64494.1| RNA methyltransferase family protein [Neisseria meningitidis
           H44/76]
 gi|325133384|gb|EGC56048.1| hypothetical protein TIGR00046 [Neisseria meningitidis M13399]
 gi|325139579|gb|EGC62119.1| hypothetical protein TIGR00046 [Neisseria meningitidis CU385]
 gi|325143638|gb|EGC65957.1| hypothetical protein TIGR00046 [Neisseria meningitidis M01-240013]
 gi|325200977|gb|ADY96432.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           H44/76]
 gi|325206833|gb|ADZ02286.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           M04-240196]
          Length = 241

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|17228844|ref|NP_485392.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc sp. PCC 7120]
 gi|17130696|dbj|BAB73306.1| alr1349 [Nostoc sp. PCC 7120]
          Length = 235

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S L+R+ +      + Q   +  Q HYL  VLR++EGD  ++ +G    WL+ ++   + 
Sbjct: 2   SQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTE--EQ 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            +   E   +++   +    I  P K +  D +++   E+G+  I PV++  T    +  
Sbjct: 60  AQVLEELAVKTELPVAITLMIALP-KGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSTQ 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEK 180
            ++R R     AAEQ +   +P I  P T    + N    H        E    +N L  
Sbjct: 119 KLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRYICEARGEYVHLKNVLTD 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +        V + IGPEGG+   E E   +L F  P+SLG RILR+ TA + A++L+ A 
Sbjct: 179 ISG-----GVVVAIGPEGGWTDRELEEATTLRF-QPVSLGGRILRAVTAPLVALSLISAA 232

Query: 241 C 241
           C
Sbjct: 233 C 233


>gi|225574856|ref|ZP_03783466.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037930|gb|EEG48176.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM
           10507]
          Length = 246

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 10/240 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           +KR F       + +   +G+  +++  VLRM+EG+ + + +G+  E+  +I  +    I
Sbjct: 1   MKRFFAKPEQIDEREIHITGEDVNHIRQVLRMREGEELWVSDGEKKEYHCRIKDFQQDEI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
             ++ Y   S  +     Y+F  + K ++++ +IQK+VE+G   + PV T         +
Sbjct: 61  LLEILYAQESDYELPSRIYLFQGLPKGDKMELIIQKAVELGAFEVIPVATSRCVVKLDKK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177
                 +R +    +AA+Q   L +P I+P  +L E L  +   + +++  +   G   +
Sbjct: 121 KAAKKQERWQEIARNAAKQSRRLLVPQIHPVCSLREALDYSGSLDVKLLPYELAKGMRQT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  I    ++ I IGPEGG+  EE E   ++  V P++LG RILR++TA +  ++++
Sbjct: 181 KETLAGIKRGQSIGIFIGPEGGFAPEEVEQAMAVG-VEPITLGKRILRTETAGMTVLSIL 239


>gi|322514739|ref|ZP_08067765.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976]
 gi|322119334|gb|EFX91450.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976]
          Length = 248

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 39/240 (16%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM EGD I+LF+G +  + + +  VGK         S    ++S++  
Sbjct: 26  SEDATNHVGRVLRMTEGDQIILFDGSNHIFHATLQAVGKKQIIAKIDSSELDNRESNLPI 85

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               +  + +R+++ IQKSVE+G+  I P+ +         +     + + +   I+A E
Sbjct: 86  HLGQVISRGDRMEFTIQKSVELGVKTITPLCSERCGVKLNDERQDKKLQQWQKIAIAACE 145

Query: 137 QCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIP 188
           QC    +P I P     F+ L +W            C  ++ + KL       + I  +P
Sbjct: 146 QCGRNEIPEIRP-----FMKLTDW------------CKEQDDMLKLNLHPRAKYTIRQLP 188

Query: 189 NVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           NV      +LIG EGG  +EE     +  F T + LG R+LR++TA++ A+  +Q   GD
Sbjct: 189 NVPEAGVRLLIGSEGGLSAEEIAMTETEGF-TEVLLGKRVLRTETASLTAITALQVCFGD 247


>gi|291295971|ref|YP_003507369.1| hypothetical protein Mrub_1587 [Meiothermus ruber DSM 1279]
 gi|290470930|gb|ADD28349.1| protein of unknown function DUF558 [Meiothermus ruber DSM 1279]
          Length = 232

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 19/240 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R FV+    I+ Q +  G + H+L  VLR +EGD + +F+GK  E  +++       +R 
Sbjct: 5   RAFVE---SIQPQVELVGREAHHLLDVLRAREGDWLTVFDGKGLEGRARVLQTEPGWVRL 61

Query: 68  KVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY---TQNTHY 122
           +VE  + +  +  Q    Y+ + +K + L  + + + E+G   I P++T++    + +  
Sbjct: 62  QVEETWPASKEPPQPITLYV-ALLKGDHLAEVARAATELGASQIVPILTQHCVVRELSEA 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
              R+    + AA+QC+   +P + P   L+ +        +  F  +      +L   H
Sbjct: 121 KRQRLERIVLEAAKQCERAVVPKVQPVLQLKLI-----PPVEQGFVAQP--RTQALLHEH 173

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
                P  A+L GPEGG    E + L +  F TP++LGPRILR++TA VA ++LV A  G
Sbjct: 174 FDPSKPT-ALLTGPEGGLGEAEVQFLQARGF-TPVTLGPRILRAETAPVALLSLVTAAFG 231


>gi|58177000|pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus
 gi|58177001|pdb|1V6Z|B Chain B, Crystal Structure Of Tt1573 From Thermus Thermophilus
 gi|85544471|pdb|2CX8|A Chain A, Crystal Structure Of Methyltransferase With Ligand(Sah)
 gi|85544472|pdb|2CX8|B Chain B, Crystal Structure Of Methyltransferase With Ligand(Sah)
 gi|160286352|pdb|2Z0Y|A Chain A, Crystal Structure Of Ttha0657-Sam Complex
 gi|160286353|pdb|2Z0Y|B Chain B, Crystal Structure Of Ttha0657-Sam Complex
          Length = 228

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 24/210 (11%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86
           +  +L  VLR + GD   +F+G+  E L+++  +G  +R++V  + R   ++  V+ +  
Sbjct: 19  ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRV-LEERRPEREVGVEVVLY 76

Query: 87  -SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142
            + +K ++L  +++ + E+G   I+P++TR++   +     + R+R   + AA+Q   + 
Sbjct: 77  VALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEXGEGKLRRLRAVALEAAKQSGRVV 136

Query: 143 LPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           +P + PP  L+ + +       H        E    E  L            A+ +GPEG
Sbjct: 137 VPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPL------------ALAVGPEG 184

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           G+  EE   L +  F TP+SLG RILR++T
Sbjct: 185 GFAEEEVALLEARGF-TPVSLGRRILRAET 213


>gi|79362513|ref|NP_175422.2| methyltransferase [Arabidopsis thaliana]
 gi|49660069|gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
 gi|55740521|gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
 gi|332194384|gb|AEE32505.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
           thaliana]
          Length = 296

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 16/222 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78
           +  G ++ ++A VLR+K+ D + LFNGK G     I  + K+ + F  +   +    Q  
Sbjct: 70  RVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGM 129

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
           Q  V   F  +K  R D++I+K  E+G  ++ P++T  +     N +DR+   + +AA+Q
Sbjct: 130 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 189

Query: 138 CDILTLPFIYPP----TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           C  L    + PP    T L+ +LK+    C +  A+    ++  L  +++ A   +  ++
Sbjct: 190 CQRLHQMVLNPPIKFGTLLDHILKS--KLCLVATAE----AKPLLNAVNSSAKESSGLLI 243

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +GPEG +  +E E +      T + LGP  LR +TA +A +A
Sbjct: 244 VGPEGDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLA 284


>gi|266621760|ref|ZP_06114695.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM
           13479]
 gi|288866557|gb|EFC98855.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM
           13479]
          Length = 245

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 118/224 (52%), Gaps = 14/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ +L+ NG D +++ ++  +   ++  ++   +   T+     
Sbjct: 19  TGPDVNHIKNVLRMKPGEEVLISNGVDKDYVCRLQTITSDAVTAEIVTVTEGGTELPAKF 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K+++++++IQK+VE+G+  + PV TR T      +     + R    + SAA+
Sbjct: 79  YLFQGLPKSDKMEFLIQKAVELGVYQVIPVETRRTVVKLDAKKVEAKVRRWNAVSESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           Q   L +P +    T +  L     +D N  I+  +   G  ++      I    +  I 
Sbjct: 139 QSKRLIIPEVTGVMTFQEALNYAGGFDKN--IIPFEHAEGMADTKAYFAGIRPGMSCGIF 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           IGPEGG+  EE  +  S   V P++LG RILR++TA +A ++++
Sbjct: 197 IGPEGGFEDEEI-SQASEAGVKPVTLGKRILRTETAGLAVLSVL 239


>gi|296134635|ref|YP_003641877.1| protein of unknown function DUF558 [Thiomonas intermedia K12]
 gi|295794757|gb|ADG29547.1| protein of unknown function DUF558 [Thiomonas intermedia K12]
          Length = 236

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 19/210 (9%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS---PIKT 91
           VLR+KEG+ + +F+G  GEW  ++    +++  +  +   +  +++DV+ + +   P   
Sbjct: 31  VLRLKEGEPVAVFDGTGGEWSGEV-IDPQTLLLRAHH---AVEREADVRVMLAVGMP-AN 85

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            R+D +++K+VE+G+ AI+P+ITR +      +     +   +   I+A EQC    +P 
Sbjct: 86  ERMDALVEKAVELGVAAIQPLITRRSVLRLQGERAQRRVAHWQGVAIAACEQCGRNRVPE 145

Query: 146 IYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           + P  TL   L++  + N Q+        S  +   L   A   +  ++ GPEGG   +E
Sbjct: 146 VAPVATLSDWLQHLGNDNAQL---HRCVLSPLATNPLRPFASGESGWMVSGPEGGLGEDE 202

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              L    F   +SLGPR+LR+DTA +AA+
Sbjct: 203 IALLQRSGFQA-VSLGPRVLRADTAPLAAL 231


>gi|237729877|ref|ZP_04560358.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908483|gb|EEH94401.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 243

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   P+   +Q     D  +++  VLRM  G  + LF+G +  + ++I++  K S
Sbjct: 2   RIPRIYHPEPITSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61

Query: 65  IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----- 116
           +  KV   E   R       +  + S  +  ++++ IQKS+E+G+  I P+ +       
Sbjct: 62  VDVKVLNAELDDRESPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKL 119

Query: 117 -TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S 
Sbjct: 120 DSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L        +  + +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+ 
Sbjct: 180 NTLP-----LPVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|291618768|ref|YP_003521510.1| YggJ [Pantoea ananatis LMG 20103]
 gi|291153798|gb|ADD78382.1| YggJ [Pantoea ananatis LMG 20103]
          Length = 243

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++   P+ + ++     D   ++  VLRM  G ++ LF+G +  + ++I++V K  R
Sbjct: 3   IPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKK-R 61

Query: 67  FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            KV    S+   ++S +      +  +  ++++ IQKS+E+G+  I P+   +++     
Sbjct: 62  VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            ++A EQC    +P I P   LE      +   ++        S
Sbjct: 119 LDAERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSTDEIAMTAQHGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|327395101|dbj|BAK12523.1| hypothetical UPF0088 protein YggJ [Pantoea ananatis AJ13355]
          Length = 243

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++   P+ + ++     D   ++  VLRM  G ++ LF+G +  + ++I++V K  R
Sbjct: 3   IPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKK-R 61

Query: 67  FKVEY-QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            KV    S+   ++S +      +  +  ++++ IQKS+E+G+  I P+   +++     
Sbjct: 62  VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            ++A EQC    +P I P   LE      +   ++        S
Sbjct: 119 LDAERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|242237998|ref|YP_002986179.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya dadantii Ech703]
 gi|242130055|gb|ACS84357.1| protein of unknown function DUF558 [Dickeya dadantii Ech703]
          Length = 244

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM  G  + LF+G +  + ++I   GK          R +  +S +  
Sbjct: 22  SEDAANHVGRVLRMTAGQALQLFDGSNQVFDAEILQTGKKSVCVRYAAGRVEDCESPLHL 81

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAA 135
               +  +  ++++ IQKS+E+G+  I P+ +        + DR+       +   ISA 
Sbjct: 82  HLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERC-GVKLDGDRLDKKIAQWQNIAISAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P  TLE      D+  ++        S N+L        I  + +LIG
Sbjct: 141 EQCGRNRIPEIRPAMTLESWCAESDNGLKLNLHPRATQSINTLS-----LPISRIRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  S E     +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 196 PEGGLSSGEIAMTAAQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242


>gi|229019535|ref|ZP_04176352.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273]
 gi|229025777|ref|ZP_04182176.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272]
 gi|228735485|gb|EEL86081.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272]
 gi|228741791|gb|EEL91974.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273]
          Length = 249

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T+ +  GD  H++  V+RM  GD+I    NGK  E  +++I+  +V 
Sbjct: 1   MQRYFVEEKHVSETKIRIVGDDVHHIGRVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGS 174
            +     ++R++     AAEQ     +P ++ P + + LL   N    C + + +E    
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHAPASFKQLLAMSNEYDVCLVAYEEEAKQG 177

Query: 175 ENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E S   + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + 
Sbjct: 178 EKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|114777358|ref|ZP_01452355.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1]
 gi|114552140|gb|EAU54642.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1]
          Length = 240

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 20/243 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW---LSKISYVGKSI 65
           RL ++ PL   T      +  HYL  V+R   GD ++LFNG  GE+   +  +S    S 
Sbjct: 4   RLHLNQPLEAGTTVDLPANLAHYLHTVMRHAVGDTVILFNGHGGEYHAVIDSLSRKAASC 63

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
           R    +++  +     V  +    ++ +++ ++QK  E+G       ITR  +++     
Sbjct: 64  RITA-FENIDREMACRVHIVQGACRSEKIETVLQKGTELGAAGFH--ITRSERSSLKLDG 120

Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +DR R     AAEQC    +P ++  T L  +     H   +     T  S   
Sbjct: 121 SKLDARLDRWRKIVTEAAEQCGRTIVPTVHWHTRLSDIPC---HGLGLTLHPHTAASWQQ 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +     I     + + +GPEGG+   +  TL    F + ++ GPRILR++TAA A +A +
Sbjct: 178 IRT--EIRESSEITLAVGPEGGWSDADIATLGERGFRS-IAFGPRILRTETAAPALLAAI 234

Query: 238 QAI 240
           QA+
Sbjct: 235 QAV 237


>gi|55980626|ref|YP_143923.1| 16S ribosomal RNA methyltransferase RsmE [Thermus thermophilus HB8]
 gi|55772039|dbj|BAD70480.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 228

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 24/210 (11%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86
           +  +L  VLR + GD   +F+G+  E L+++  +G  +R++V  + R   ++  V+ +  
Sbjct: 19  ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRV-LEERRPEREVGVEVVLY 76

Query: 87  -SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142
            + +K ++L  +++ + E+G   I+P++TR++   +     + R+R   + AA+Q   + 
Sbjct: 77  VALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVV 136

Query: 143 LPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           +P + PP  L+ + +       H        E    E  L            A+ +GPEG
Sbjct: 137 VPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPL------------ALAVGPEG 184

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           G+  EE   L +  F TP+SLG RILR++T
Sbjct: 185 GFAEEEVALLEARGF-TPVSLGRRILRAET 213


>gi|325131649|gb|EGC54355.1| hypothetical protein TIGR00046 [Neisseria meningitidis M6190]
 gi|325137512|gb|EGC60095.1| hypothetical protein TIGR00046 [Neisseria meningitidis ES14902]
 gi|325141520|gb|EGC63990.1| hypothetical protein TIGR00046 [Neisseria meningitidis 961-5945]
 gi|325199017|gb|ADY94473.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           G2136]
          Length = 241

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLADIRQ-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|297852690|ref|XP_002894226.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297340068|gb|EFH70485.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 295

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 12/220 (5%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78
           +  G ++ ++A VLR+K+ D + LFNGK G     I  + K+ + F  +   +    Q  
Sbjct: 69  RVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGI 128

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
           Q  V   F  +K  R D++++K  E+G  ++ P++T  +     N +DR+   + +AA+Q
Sbjct: 129 QWQVFAAFGTLKGGRADWLVEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAAAKQ 188

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           C  L    + PP   + LL +   +  C +  A+ T      L  +++     +  +++G
Sbjct: 189 CQRLHQMVLNPPIKFDTLLGHISKSKLCLVATAEAT----PLLNAVNSSTKETSGILIVG 244

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           PEG +  +E E +      T + LGP  LR +TA +A +A
Sbjct: 245 PEGDFTKKEVEMMLE-AGSTAVGLGPHRLRVETATIALLA 283


>gi|325201437|gb|ADY96891.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           M01-240149]
 gi|325207417|gb|ADZ02869.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           NZ-05/33]
          Length = 241

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|226311620|ref|YP_002771514.1| hypothetical protein BBR47_20330 [Brevibacillus brevis NBRC 100599]
 gi|226094568|dbj|BAH43010.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 252

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 31/248 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+     + +    GD  H++ +V+R +EG+ I++ +G            G+S R
Sbjct: 1   MQRYFVEPHSFTENELTIVGDDVHHIVNVMRAREGEEIIVSDG-----------AGRSAR 49

Query: 67  FKVEYQSRSQTKQSDVQYIFS----PI---------KTNRLDYMIQKSVEMGMGAIRPVI 113
            K+ Y S  + +   ++ +      PI         K  +L++++QK  E+G  +  P  
Sbjct: 50  AKLVYLSAKEVRAEVMEMLQEERELPIRVTIGQGLPKGEKLEWILQKGTELGAYSFFPFS 109

Query: 114 TRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
           +  T      +     ++R R     AAEQ     LP +  P +   +L+          
Sbjct: 110 SERTIVKLDAKKEAKKLERWRKIVKEAAEQSHRAVLPELLSPVSFREILEAGQSYTHCAI 169

Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           A E  GS    + L  +    ++ +L+GPEGG+  EE     S  F+T +SLGPRILR++
Sbjct: 170 AYEKEGSTTIHQVLEEMTASDSLLVLVGPEGGFSPEEVAQAESKGFLT-VSLGPRILRTE 228

Query: 228 TAAVAAMA 235
           TA+   +A
Sbjct: 229 TASQYVLA 236


>gi|161869288|ref|YP_001598455.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
           053442]
 gi|161594841|gb|ABX72501.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 241

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
             R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|269137637|ref|YP_003294337.1| hypothetical protein ETAE_0279 [Edwardsiella tarda EIB202]
 gi|267983297|gb|ACY83126.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557702|gb|ADM40366.1| Ribosomal RNA small subunit methyltransferase E [Edwardsiella tarda
           FL6-60]
          Length = 243

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 18/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64
            + R++   PL I  +     D  +++  VLRM  G  + LF+G +  + ++I S   KS
Sbjct: 2   RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIISADKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +R ++ +   +  ++S +      +  +  ++++ IQKS+E+G+  I P+I+        
Sbjct: 62  VRVRLNHVQEAD-RESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERC-GVRL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           + +R+       +   I+A EQC    +P I P   LE      D   ++        S 
Sbjct: 120 DAERMAKKQQQWQKIAIAACEQCGRNRIPQIRPAMDLEAWCAEEDDCLRLNLHPRASASI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L +      +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ A+ 
Sbjct: 180 NTLPQ-----PLTRVRLLIGPEGGLSAAEIAMTADYRF-TDILLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|229013531|ref|ZP_04170665.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048]
 gi|228747768|gb|EEL97637.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048]
          Length = 249

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK  E  +++I+  +V 
Sbjct: 1   MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173
            +     ++R++     AAEQ     +P ++ P++ + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKSLATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|126663640|ref|ZP_01734636.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38]
 gi|126624223|gb|EAZ94915.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38]
          Length = 234

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 14/213 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-- 84
           ++  ++  VLR KEGD I + NG    + S+I    +    K E +   +T Q  V +  
Sbjct: 21  EESKHIVKVLRKKEGDTIFITNGLGFLFESEIILASEK---KCEVKIAKETFQEPVAFYT 77

Query: 85  --IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K N RL++ ++K+ E+G+  I P+I  +++   Y +DR      +A +Q    
Sbjct: 78  HIAVAPTKMNDRLEWFLEKATEIGIDEITPIICDHSERKVYKIDRAEKIIQAAMKQSLHY 137

Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            LP I  PT+L +F+  N++    I   +ET   + S +  + I H   + ILIGPEG +
Sbjct: 138 YLPKINEPTSLSQFVKLNFEGQKFIAHCEET--DKKSFK--NEIKHNEKITILIGPEGDF 193

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            ++E     +  F+ P++LG   LR++TAA+ A
Sbjct: 194 STKEINLAIANQFI-PVTLGNTRLRTETAALVA 225


>gi|91794324|ref|YP_563975.1| hypothetical protein Sden_2974 [Shewanella denitrificans OS217]
 gi|91716326|gb|ABE56252.1| protein of unknown function DUF558 [Shewanella denitrificans OS217]
          Length = 244

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 22/229 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           D   ++  VLRM EG+ ++LFNG   ++L+ I+    K+I   +     ++++     ++
Sbjct: 24  DGAAHIGRVLRMSEGEQVMLFNGDGKDYLADITSASKKNITITIISMEDNRSESGLNLHL 83

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
              I + +R+++ IQKSVE+G+  I P+ +         +     +++ +   ISA EQ 
Sbjct: 84  GQVISRGDRMEFTIQKSVELGVNTITPLFSERCGVKLTGERLEKKINQWQKIVISACEQS 143

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAILI 194
               +P I P   +    +      ++                H I  +    P V +LI
Sbjct: 144 GRSQVPLIRPAMDVAAWCQEPSQALKLNLHPRAS---------HGIKGLTLENPRVRLLI 194

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  SEE        F T + LGPR+LR++TA++ A+  +Q   GD
Sbjct: 195 GPEGGLSSEEILMTEQCDF-TDVLLGPRVLRTETASLTAITALQLTFGD 242


>gi|190575526|ref|YP_001973371.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas
           maltophilia K279a]
 gi|190013448|emb|CAQ47083.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 245

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 18/228 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE-YQSRSQTKQSDVQY 84
           +  ++L  V+R++EGD  +LFNG   ++ + ++  GK  ++ +++  Q+        +  
Sbjct: 23  ETANHLVRVMRLREGDTCVLFNGDGHDYSATLTAAGKREVQVRIDAVQAVDNESPLAITL 82

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---------YTISAA 135
           +    +  ++D ++QK+ E+G+ AI PV     + T   +D  R             SA 
Sbjct: 83  LQGIARGEKMDLILQKATELGVSAIVPV---NAERTEVKLDVARAEKRVAHWNNVVTSAC 139

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
            Q     +P +  P +L         +   +  D      + L  L A A    + I IG
Sbjct: 140 GQSGRARIPQVGSPVSLAQAATTLPADTLRLTLDPH--GAHRLSTLDA-APTGGIVIAIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+   +++ L +  F   L LGPRILR++TA +AA+A +QA  GD
Sbjct: 197 PEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAALQARLGD 243


>gi|308390021|gb|ADO32341.1| hypothetical protein NMBB_2198 [Neisseria meningitidis alpha710]
 gi|325129462|gb|EGC52292.1| hypothetical protein TIGR00046 [Neisseria meningitidis OX99.30304]
          Length = 241

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAARLTVLEKR-RAEAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
             R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I   P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRQ-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAAMQTLWGDF 240


>gi|293390908|ref|ZP_06635242.1| 16S rRNA methyltransferase RsmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951442|gb|EFE01561.1| 16S rRNA methyltransferase RsmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 244

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 23/248 (9%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           R++   PL   T    S D  +++  VLRM+ GD + LF+G +  + + I+ V  KS+  
Sbjct: 5   RIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVTKKSVEV 64

Query: 68  KV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
            +   ++ +R       +  + S  +  R+++ IQKSVE+G+  I P+   +++     +
Sbjct: 65  DILNRQFDNRESHLTIHLGQVIS--RGERMEFTIQKSVELGVNVITPL---WSERCGVKL 119

Query: 125 DRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           D  R            I+A EQC    +P I P   L+      D   ++        S 
Sbjct: 120 DGERMEKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAERDEALKLNLHPRASYSI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +L ++ A      V +LIG EGG   +E        FV  L LG R+LR++TAA+AA+ 
Sbjct: 180 RTLPEIPA----AGVRLLIGSEGGLSPQEIAQTEQQGFVEVL-LGKRVLRTETAAIAAIT 234

Query: 236 LVQAICGD 243
           ++Q   GD
Sbjct: 235 VLQVCFGD 242


>gi|229062009|ref|ZP_04199335.1| RNA methyltransferase, RsmE [Bacillus cereus AH603]
 gi|229169059|ref|ZP_04296775.1| RNA methyltransferase, RsmE [Bacillus cereus AH621]
 gi|228614468|gb|EEK71577.1| RNA methyltransferase, RsmE [Bacillus cereus AH621]
 gi|228717318|gb|EEL68991.1| RNA methyltransferase, RsmE [Bacillus cereus AH603]
          Length = 249

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK  E  +++I+  +V 
Sbjct: 1   MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCG 173
            +     ++R++     AAEQ     +P ++ P++ + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|153003145|ref|YP_001377470.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026718|gb|ABS24486.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5]
          Length = 246

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 15/224 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT-KQSDVQYI 85
           +  HYL  VLR+  G  + +F+G+ G W +++    +++      + R+Q    +++  +
Sbjct: 23  EARHYLRDVLRLGPGAEVEVFDGRGGAWAARVDAAYEALLLG---ERRAQGGAAAEIWLV 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +  K  ++D ++QK+ E+G   + P      V+            R R     AA QC 
Sbjct: 80  AALAKGEKMDLVVQKATELGAAGVAPFAAERSVVRLEPDKGEERARRWRRIAEEAARQCG 139

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              +P +  P  L  +L         +          +LE + A A+    A ++GPEGG
Sbjct: 140 RADVPEVRAPAPLAGVLAALPPGALAIALQPGGPPVLALEPVAARAY----AAIVGPEGG 195

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               E     +       +LGPR+LR++TAA+ A+AL+QA  GD
Sbjct: 196 LTDVELAACDAAGARR-AALGPRVLRAETAAIVAVALLQARFGD 238


>gi|194472615|ref|ZP_03078599.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197248239|ref|YP_002148008.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|198245476|ref|YP_002217069.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205358823|ref|ZP_02659413.2| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205359716|ref|ZP_02831876.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207858355|ref|YP_002245006.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|194458979|gb|EDX47818.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197211942|gb|ACH49339.1| protein YggJ [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197939992|gb|ACH77325.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205331705|gb|EDZ18469.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205343320|gb|EDZ30084.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206710158|emb|CAR34514.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|320087526|emb|CBY97291.1| Ribosomal RNA small subunit methyltransferase E 16S rRNA m3U1498
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|326624841|gb|EGE31186.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 259

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257


>gi|238918250|ref|YP_002931764.1| hypothetical protein NT01EI_0287 [Edwardsiella ictaluri 93-146]
 gi|238867818|gb|ACR67529.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64
            + R++   PL I  +     D  +++  VLRM  G  + LF+G +  + ++I S   K+
Sbjct: 2   RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIVSADKKN 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +R +++   R +  +S +      +  +  ++++ IQKS+E+G+  I P+I+        
Sbjct: 62  VRVRLDG-VREEDSESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERC-GVRL 119

Query: 123 NMDRV-------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           + +R+       +   I+A EQC    +P I P  TLE      D   ++        S 
Sbjct: 120 DAERMAKKQQQWQKIAIAACEQCGRNRIPQIRPIMTLEAWCAEPDDGLRLNLHPRASASI 179

Query: 176 NSLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           N+L        +P   + +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A
Sbjct: 180 NTLP-------LPQHRIRLLIGPEGGLSADEIAMTANHRF-TDILLGPRVLRTETTALTA 231

Query: 234 MALVQAICGD 243
           +  +Q   GD
Sbjct: 232 ITALQVRFGD 241


>gi|227326188|ref|ZP_03830212.1| hypothetical protein PcarcW_02253 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 244

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79
           + + S D  +++  VLRM  G ++ LF+G +  + ++I   GK S+R +     + + K+
Sbjct: 18  EAELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKKSVRVRF-TAGKLEDKE 76

Query: 80  SDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYT 131
           S +      +  +  ++++ IQKS+E+G+  I P+++         +     + + +   
Sbjct: 77  SPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKISQWQKIA 136

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           ++A EQ     +P + P  TLE      D   ++        S N+L        +  V 
Sbjct: 137 VAACEQSGRNCVPLVRPAMTLEAWCAEQDDALKLNLHPRATQSINTLP-----LPVARVR 191

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +LIGPEGG  + E  T+ S    T + LGPR+LR++T A+ AM  +Q   GD
Sbjct: 192 LLIGPEGGLTAGEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242


>gi|158320271|ref|YP_001512778.1| hypothetical protein Clos_1236 [Alkaliphilus oremlandii OhILAs]
 gi|158140470|gb|ABW18782.1| protein of unknown function DUF558 [Alkaliphilus oremlandii OhILAs]
          Length = 256

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 122/233 (52%), Gaps = 19/233 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYI 85
           +   +++ VLR+KE D + + +G+  E++  I+ + K+ +   +E + R  T+++ V+ +
Sbjct: 23  EDVKHISKVLRLKEKDIVEICDGESKEYICSIASIHKNEVVLSIE-EERKSTQEASVEVV 81

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAAE 136
                 K  ++D +IQK+ E+G+  I PV+   T       ++    ++R +     AA+
Sbjct: 82  LYQGVPKGAKMDLIIQKTTELGIKEIIPVMMERTVVQFDSPKDEVKKVERWQKIAEEAAK 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKL--HAIAHIPNVA 191
           Q     +P I+ P + +  +++   N   +     +E  G +N ++ L     A I  + 
Sbjct: 142 QSKRGMIPKIHLPMSFKDAIEDSRKNALNIMPYENEENRGFKNIIKNLSKEDQASIKKIG 201

Query: 192 ILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + IGPEGG+  EE E + ++   + P++LGPRILR++TA    ++LV    GD
Sbjct: 202 VWIGPEGGF--EESEVVKAIENGIHPVTLGPRILRTETAGFTMLSLVMYELGD 252


>gi|194442934|ref|YP_002042353.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194737195|ref|YP_002116042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195873572|ref|ZP_02697636.2| protein YggJ [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197300804|ref|ZP_02661220.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204928270|ref|ZP_03219470.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205357183|ref|ZP_02345767.2| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205359187|ref|ZP_02667829.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205360780|ref|ZP_02686433.2| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224584887|ref|YP_002638686.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238909892|ref|ZP_04653729.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161365422|gb|ABX69190.1| hypothetical protein SPAB_03859 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401597|gb|ACF61819.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408317|gb|ACF68536.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194712697|gb|ACF91918.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633273|gb|EDX51687.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197290907|gb|EDY30261.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204322592|gb|EDZ07789.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205323264|gb|EDZ11103.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205338220|gb|EDZ24984.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205347043|gb|EDZ33674.1| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224469415|gb|ACN47245.1| hypothetical protein SPC_3159 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322613491|gb|EFY10432.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621083|gb|EFY17941.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624147|gb|EFY20981.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628114|gb|EFY24903.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633233|gb|EFY29975.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636189|gb|EFY32897.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639527|gb|EFY36215.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647540|gb|EFY44029.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648724|gb|EFY45171.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653779|gb|EFY50105.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657885|gb|EFY54153.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663988|gb|EFY60187.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669001|gb|EFY65152.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673005|gb|EFY69112.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678004|gb|EFY74067.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681180|gb|EFY77213.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687890|gb|EFY83857.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194914|gb|EFZ80101.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196665|gb|EFZ81813.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202635|gb|EFZ87675.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207878|gb|EFZ92824.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212570|gb|EFZ97387.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214947|gb|EFZ99695.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222677|gb|EGA07042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225420|gb|EGA09652.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230565|gb|EGA14683.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235084|gb|EGA19170.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239123|gb|EGA23173.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244519|gb|EGA28525.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247134|gb|EGA31100.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253383|gb|EGA37212.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256310|gb|EGA40046.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262514|gb|EGA46070.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267390|gb|EGA50874.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269206|gb|EGA52661.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 259

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257


>gi|213023350|ref|ZP_03337797.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163039|ref|ZP_03348749.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424112|ref|ZP_03357005.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580648|ref|ZP_03362474.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213612784|ref|ZP_03370610.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648200|ref|ZP_03378253.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850166|ref|ZP_03381064.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828647|ref|ZP_06546457.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 259

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINTLP-----LPVER 204

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257


>gi|83746774|ref|ZP_00943822.1| surface protein [Ralstonia solanacearum UW551]
 gi|207744320|ref|YP_002260712.1| hypothetical protein RSIPO_02511 [Ralstonia solanacearum IPO1609]
 gi|83726543|gb|EAP73673.1| surface protein [Ralstonia solanacearum UW551]
 gi|206595725|emb|CAQ62652.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 249

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 125/255 (49%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R ++D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +  R
Sbjct: 3   LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINR--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116
                 + +    ++ +Y  +  +     +++D++I+K+VE+G+ AI P      V+   
Sbjct: 60  DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAITPLQTERGVVRLS 119

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   +    +A EQC    +P + P TTL   L     + +        GS++
Sbjct: 120 GERAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQS 179

Query: 177 -------SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                  S E++ +      + +LIGPEGG  S ++E+L       PL+LG RILR+++A
Sbjct: 180 LTQWAAQSRERIDST----GIELLIGPEGGL-SPDEESLAEAAGYLPLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + A+ G++
Sbjct: 235 ALVAVSALHAVLGEF 249


>gi|16761869|ref|NP_457486.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143356|ref|NP_806698.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|291084775|ref|ZP_06542159.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25345391|pir||AF0877 conserved hypothetical protein STY3247 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504171|emb|CAD02918.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138990|gb|AAO70558.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 243

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 16  TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 76  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 134 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINTLP-----LPVER 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 189 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|317049423|ref|YP_004117071.1| hypothetical protein Pat9b_3219 [Pantoea sp. At-9b]
 gi|316951040|gb|ADU70515.1| protein of unknown function DUF558 [Pantoea sp. At-9b]
          Length = 243

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 22/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F   PL + ++     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIFHPEPLAVNSEVFLDEDAANHVGRVLRMSAGQRLELFDGSNLTFAAEITQADKK- 60

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           R KV    S+   ++S +      +  +  ++++ IQKS+E+G+  I P+   +++    
Sbjct: 61  RVKVRVLDSQQDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPL---FSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P I    TLE          ++        
Sbjct: 118 KLDAERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEAADGLKLNLHPRASH 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           S N+L +      +  + +LIGPEGG  +EE        F T + LGPR+LR++T A+ A
Sbjct: 178 SINTLPQ-----PVERIRLLIGPEGGLSTEEIAMTAQHGF-TDILLGPRVLRTETTALTA 231

Query: 234 MALVQAICGD 243
           +  +Q   GD
Sbjct: 232 ITALQVRFGD 241


>gi|46198606|ref|YP_004273.1| hypothetical protein TTC0298 [Thermus thermophilus HB27]
 gi|46196229|gb|AAS80646.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 228

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 24/210 (11%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF- 86
           +  +L  VLR + GD   +F+G+  E L+++  +G  +R++V  + R   ++  V+ +  
Sbjct: 19  ETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRV-LEERRPEREVGVEVVLY 76

Query: 87  -SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILT 142
            + +K ++L  +++ + E+G   I+P++TR++   +     + R+R   + AA+Q   + 
Sbjct: 77  VALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVR 136

Query: 143 LPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           +P + PP  L+ + +       H        E    E  L            A+ +GPEG
Sbjct: 137 VPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPL------------ALAVGPEG 184

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           G+  EE   L +  F TP+SLG RILR++T
Sbjct: 185 GFAEEEVALLEARGF-TPVSLGRRILRAET 213


>gi|319796621|ref|YP_004158261.1| hypothetical protein Varpa_5998 [Variovorax paradoxus EPS]
 gi|315599084|gb|ADU40150.1| protein of unknown function DUF558 [Variovorax paradoxus EPS]
          Length = 246

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 17/216 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
            VLRM+ GD + LF+G  GE+ + I  +G+S +   V      + + +   ++   +  N
Sbjct: 27  QVLRMQPGDALTLFDGAGGEYEATIERMGRSDVSVTVGVHHPVEREATRAVHLAVGMPAN 86

Query: 93  -RLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTY----TISAAEQCDILTLPF 145
            R+D++++K+ E+G+ +I+P+ T +   + +    ++ R +     I+A EQC    +P 
Sbjct: 87  ERMDWLVEKATELGVASIQPLATAHGVLRLSGERAEKKRAHWEAIAIAACEQCGRNRVPV 146

Query: 146 IYPPTTLE----FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEG 198
           I+P  +      ++    D      F          +E   A AH P   +V +L GPEG
Sbjct: 147 IHPVRSFSGNSGWIDAQQDEGATARFVLSLAEGTQGIEAASA-AHAPDNRDVRVLSGPEG 205

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           G  + E++   +  F  P++LG R+LR++TAA+ A+
Sbjct: 206 GLSAAEEQEAIARGF-APVTLGLRVLRAETAALVAL 240


>gi|114331048|ref|YP_747270.1| hypothetical protein Neut_1049 [Nitrosomonas eutropha C91]
 gi|114308062|gb|ABI59305.1| protein of unknown function DUF558 [Nitrosomonas eutropha C91]
          Length = 253

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           + D  H+   VLR+K+GD ++LF+G  GE+   +  V KS    K+E     + +   + 
Sbjct: 21  NNDTSHHAVQVLRLKQGDPVILFDGTGGEFSGCLVQVRKSACVVKIEQHLPVERESPLML 80

Query: 84  YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            +   + TN ++D++IQK+VE G+  I+P+IT  T      +         +   ISA E
Sbjct: 81  TLAQAVCTNEKMDWIIQKAVEQGVIYIQPLITNRTLIRLTGERADKRWQHWQKIIISACE 140

Query: 137 QCDILTLPFIYPPTTL------EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
           QC    +P + P  +L      + L K  + N        +  +   L +L        +
Sbjct: 141 QCGRNRIPQLLPLMSLSHWLEQKLLQKQENSNLSGRDIILSPVARLRLAELSPPESGECI 200

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +L GPEGG+  EE + +    F+ P+ LG RILR++TAA+AA+A  Q + GD+
Sbjct: 201 TLLTGPEGGFTEEETDAMLHAGFI-PICLGTRILRTETAALAAIAAAQVLWGDY 253


>gi|163816746|ref|ZP_02208109.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759]
 gi|158448003|gb|EDP24998.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           + R FVD     I T  + +G   +++ +VLR+K G+ IL+ +G+  ++  +IS +    
Sbjct: 1   MNRFFVDIDGRDIGTDIEITGGDVNHIKNVLRLKIGEEILVSDGRGRDYTCRISRIDPDK 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   +E  S +  +      +F    K++++D ++QK VE+G+  I PV T  T      
Sbjct: 61  VVCNIEDISDNFAELPVKVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVFTSRTIVKLDQ 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
           +      +R RT   SAA+Q     +P I  P +    L      +  I+  +E  G E 
Sbjct: 121 KKATKKTERYRTIAESAAKQSGRGIVPEITEPVSFAKALDMASELDMNIIPYEEAEGIEE 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S + +  +    ++ I IGPEGG+  EE E   +      ++LG RILR++TA +A MA+
Sbjct: 181 SRQIIANVRGKRSLGIFIGPEGGFAREEVEEAVAAG-AECITLGHRILRTETAGLAVMAI 239

Query: 237 V 237
           +
Sbjct: 240 I 240


>gi|56415032|ref|YP_152107.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363961|ref|YP_002143598.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|229307087|ref|YP_001590023.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|229597264|ref|YP_002047082.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|56129289|gb|AAV78795.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095438|emb|CAR60997.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 16  TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 76  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 134 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 189 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|307260690|ref|ZP_07542380.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869611|gb|EFN01398.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 37/239 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM EG+ I+LF+G +  + + +  VGK         S    ++S++  
Sbjct: 21  SEDATNHVGRVLRMTEGEQIILFDGSNHIFHTTLQAVGKKQIIAKIDGSELDNRESNLPI 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136
               +  + +R+++ IQKSVE+G+  I P+      +    +     + + +   I+A E
Sbjct: 81  HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189
           QC    +P I P       L +W            C  ++ + KL       + I  +PN
Sbjct: 141 QCGRNEIPEIRPI----MKLTDW------------CKEQDDMLKLNLHPRAKYTIRQLPN 184

Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V      +LIG EGG  +EE     +  F T + LG R+LR++TA++AA+  +Q   GD
Sbjct: 185 VPEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITALQVCFGD 242


>gi|205354017|ref|YP_002227818.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273798|emb|CAR38793.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326629130|gb|EGE35473.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 259

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR--T 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R +   
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKRRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257


>gi|260599273|ref|YP_003211844.1| ribosomal RNA small subunit methyltransferase E [Cronobacter
           turicensis z3032]
 gi|260218450|emb|CBA33577.1| Ribosomal RNA small subunit methyltransferase E [Cronobacter
           turicensis z3032]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL + ++     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLVVGSEIALDEDAANHVGRVLRMSAGQALQLFDGSNQVFAAEITQANKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  +    ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VLVNVVSAEEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMDLEAWCAEPDTGLKLNLHPRAAHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|290476315|ref|YP_003469219.1| hypothetical protein XBJ1_3337 [Xenorhabdus bovienii SS-2004]
 gi|289175652|emb|CBJ82455.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 123/254 (48%), Gaps = 30/254 (11%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64
            + R++    L ++T+   S +  +++  VLRM  G  + LF+G +  + ++ I    K+
Sbjct: 2   RIPRIYHPERLSVETEIYLSDEAANHVGRVLRMSNGQPLQLFDGSNQVFDAELIEASKKT 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITR 115
           I+ ++     +  K SD +   SP+         +  ++++ IQKSVE+G+  I P+++ 
Sbjct: 62  IKVRI-----TDGKLSDHE---SPLNLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSE 113

Query: 116 Y------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169
                   +     + + +   ISA EQC    +P I P  +LE      D + ++    
Sbjct: 114 RCGVKLDAERLEKKLQQWKKIVISACEQCGRNCIPEIRPVMSLEAWCAENDGSLKLNLHP 173

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               S N+L        +  + +LIGPEGG  +EE E   +  F T + LGPR+LR++T 
Sbjct: 174 RASQSINTLP-----LPVEKIRLLIGPEGGLSAEEIEMTANHQF-TDILLGPRVLRTETT 227

Query: 230 AVAAMALVQAICGD 243
           A+ A+  +Q   GD
Sbjct: 228 ALTAITALQVRFGD 241


>gi|160940893|ref|ZP_02088233.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436137|gb|EDP13904.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC
           BAA-613]
          Length = 249

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 120/226 (53%), Gaps = 12/226 (5%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80
           + +G   +++ +VLR+++G+ +L+ +G   ++L +   + G+ +  ++ E +   +   S
Sbjct: 17  RITGSDVNHIKNVLRIRQGEEMLVSDGTGRDYLCQAEEIAGQEVTVRILETEEEGRELPS 76

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
            +       K+++++++IQK+VE+G   I PV TR T      +     + R +    SA
Sbjct: 77  RIWLFQGLPKSDKMEFIIQKAVELGAAGIVPVSTRNTVVKLDPKKEEAKVKRWQAIAESA 136

Query: 135 AEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           A+Q     +P +    TL+     +++   + +++  +   G + +  +L A     ++A
Sbjct: 137 AKQSKRSLVPRVSGIMTLKEAFDYVESQGFSVRLIPYEHEAGMDGTKTELDAAGPGQDIA 196

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + IGPEGG+   E E   S   V P+SLG RILR++TA +A ++++
Sbjct: 197 VFIGPEGGFDEREIELALS-KGVRPISLGRRILRTETAGLALLSVL 241


>gi|20807439|ref|NP_622610.1| hypothetical protein TTE0958 [Thermoanaerobacter tengcongensis MB4]
 gi|20515963|gb|AAM24214.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 245

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++++FV+     K +GK     G  +H+L HVLR K GD I++ +  + E L +I  + K
Sbjct: 1   MRKIFVEKG---KIKGKFAYVDGKDFHHLIHVLRYKVGDKIVVSDMAE-EHLGRIEKIEK 56

Query: 64  --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             +I F  E    +     +V      +K +++D ++QK  E+G+  I P ++ ++    
Sbjct: 57  DRAILFLEEKMEGNAESPLEVFLFQGILKADKMDLIVQKCTEIGVKRIIPFVSEFSVVDI 116

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
              N    ++R +  +  A +Q     +P I  P + +  ++        +   E    +
Sbjct: 117 KRANIDKKVERWKKISEEACKQSGRNIIPEISAPVSFKEAIEKAMECDLAIIPYEKEEKK 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              E L  +     + I IGPEGG+  +E E   +   V P++LGPRILR++TAA+A  A
Sbjct: 177 RLKEVLKDVEDAKKIGIFIGPEGGFSQKEIEKAINNGIV-PVTLGPRILRAETAAIAVSA 235

Query: 236 LVQAICGD 243
           +V    GD
Sbjct: 236 IVMYQLGD 243


>gi|332162804|ref|YP_004299381.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604355|emb|CBY25853.1| ribosomal RNA small subunit methyltransferase E [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667034|gb|ADZ43678.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330858994|emb|CBX69352.1| ribosomal RNA small subunit methyltransferase E [Yersinia
           enterocolitica W22703]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ IQKS+E+G+  I P+   +++     
Sbjct: 62  LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVDVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I     L       D + ++        S
Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCTEQDDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|32034407|ref|ZP_00134589.1| COG1385: Uncharacterized protein conserved in bacteria
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207721|ref|YP_001052946.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus
           pleuropneumoniae L20]
 gi|165975693|ref|YP_001651286.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149504|ref|YP_001968029.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251645|ref|ZP_07337818.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252796|ref|ZP_07338956.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247218|ref|ZP_07529268.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249446|ref|ZP_07531435.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251763|ref|ZP_07533666.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254000|ref|ZP_07535848.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256261|ref|ZP_07538045.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258455|ref|ZP_07540193.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262823|ref|ZP_07544448.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126096513|gb|ABN73341.1| hypothetical protein APL_0233 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875794|gb|ABY68842.1| hypothetical protein APJL_0238 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914635|gb|ACE60887.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648357|gb|EFL78553.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649487|gb|EFL79670.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306856276|gb|EFM88429.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858520|gb|EFM90587.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860764|gb|EFM92774.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863026|gb|EFM94972.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865225|gb|EFM97124.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867460|gb|EFM99310.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871838|gb|EFN03557.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 37/239 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM EG+ I+LF+G +  + + +  VGK         S    ++S++  
Sbjct: 21  SEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQIIAKIDGSELDNRESNLPI 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136
               +  + +R+++ IQKSVE+G+  I P+      +    +     + + +   I+A E
Sbjct: 81  HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189
           QC    +P I P       L +W            C  ++ + KL       + I  +PN
Sbjct: 141 QCGRNEIPEIRPIMK----LTDW------------CKEQDDMLKLNLHPRAKYTIRQLPN 184

Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V      +LIG EGG  +EE     +  F T + LG R+LR++TA++AA+  +Q   GD
Sbjct: 185 VPEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITALQVCFGD 242


>gi|283788532|ref|YP_003368397.1| hypothetical protein ROD_50401 [Citrobacter rodentium ICC168]
 gi|282951986|emb|CBG91713.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 18/245 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           R++   P+   TQ     D  ++   VLRM  G  + LF+G +  + ++I    K S+  
Sbjct: 5   RIYHPEPVTPGTQISLCEDAANHTGRVLRMGPGQPLQLFDGSNQVFDAEIVLASKKSVEV 64

Query: 68  KV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
           KV   E   R       +  + S  +  ++++ IQKS+E+G+  I P+ +        N 
Sbjct: 65  KVLRGEIDDRESPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNE 122

Query: 121 HYNMDRVR--TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
             N  R +     I+A EQC    +P I P   LE      D   ++        S N+L
Sbjct: 123 RLNKKRQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASDSINTL 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                   +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q
Sbjct: 183 P-----LPVERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITALQ 236

Query: 239 AICGD 243
              GD
Sbjct: 237 VRFGD 241


>gi|253690071|ref|YP_003019261.1| hypothetical protein PC1_3710 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756649|gb|ACT14725.1| protein of unknown function DUF558 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 244

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S D  +++  VLRM  G  + LF+G +  + ++I   GK S+R       + + K+S + 
Sbjct: 22  SDDAANHVGRVLRMNTGQALQLFDGSNHVFDAEIIAAGKKSVRVHF-TAGKLENKESPLH 80

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
                +  +  ++++ IQKS+E+G+  I P+++         +     +++ +   I+A 
Sbjct: 81  LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKINQWQKIAIAAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ     +P + P  TLE      D   ++        S N+L        +  V +LIG
Sbjct: 141 EQSGRNCVPLVRPAMTLEAWCAEQDSALKLNLHPRATQSINTLP-----LPVDRVRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  + E  T+ S    T + LGPR+LR++T A+ AM  +Q   GD
Sbjct: 196 PEGGLTASEI-TMTSEHGFTDILLGPRVLRTETTALTAMTALQVRFGD 242


>gi|197284242|ref|YP_002150114.1| hypothetical protein PMI0341 [Proteus mirabilis HI4320]
 gi|227357855|ref|ZP_03842203.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC
           29906]
 gi|194681729|emb|CAR40885.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227161965|gb|EEI46983.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC
           29906]
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64
            + R++   PL   TQ   + +  +++  VLRM +G  + LF+G +  + + I     KS
Sbjct: 2   RIPRIYHPEPLSAGTQTSLAEEAANHVGRVLRMSKGQKLALFDGSNQVFDADIIESSKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++ E Q   +    D+       +  ++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VIVQINEGQMDDRESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDP 121

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +  H    ++    ISA EQC    +P + P  +LE      D + ++        S
Sbjct: 122 SRLEKKHQQWQKI---IISACEQCGRNKIPQLMPVMSLEAWCAQTDDSLKLNLHPRASQS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        +  V +LIGPEGG   EE        F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----LPVKKVRLLIGPEGGLSPEEIAMTAKYHF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|238759323|ref|ZP_04620489.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae
           ATCC 35236]
 gi|238702484|gb|EEP95035.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae
           ATCC 35236]
          Length = 261

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG N+ LF+G +  + ++I    K  
Sbjct: 20  RIPRIYHPQPLQANTELALSDEAANHVGRVLRMMEGQNLQLFDGSNQVFTAEIIRADKKN 79

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 +   + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 80  LIVRIAEGLLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 136

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I     L       D + ++        S
Sbjct: 137 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAEQDDSLKLNLHPRANNS 196

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L      A +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 197 INTLS-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 250

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 251 TALQVRFGD 259


>gi|68248905|ref|YP_248017.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae
           86-028NP]
 gi|68057104|gb|AAX87357.1| conserved hypothetical RNA methyltransferase [Haemophilus
           influenzae 86-028NP]
          Length = 245

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 123/259 (47%), Gaps = 39/259 (15%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
             KVE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+ +        
Sbjct: 61  SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           T+     + + +   I+A EQC   ++P I P   L+    +W            C   +
Sbjct: 121 TERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA++AA++ +Q   GD
Sbjct: 224 RTETASLAAISALQICFGD 242


>gi|229174986|ref|ZP_04302505.1| RNA methyltransferase, RsmE [Bacillus cereus MM3]
 gi|228608447|gb|EEK65750.1| RNA methyltransferase, RsmE [Bacillus cereus MM3]
          Length = 249

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 22/245 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDG-----EWLSKISY 60
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK       E  S+  +
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAICSIDEITSE--F 58

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VIT 114
           +  +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++ 
Sbjct: 59  INTAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVK 115

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETC 172
              +     ++R+R     AAEQ     +P ++ P + + LL   N    C + + +E  
Sbjct: 116 WDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSNEYDVCLVAYEEEAK 175

Query: 173 GSENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             E S   + L  +     + I+ GPEGG   EE  TL    FV P SLGPRILR++TA 
Sbjct: 176 QGEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAP 234

Query: 231 VAAMA 235
           + A++
Sbjct: 235 LYALS 239


>gi|227115169|ref|ZP_03828825.1| hypothetical protein PcarbP_19518 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 244

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S D  +++  VLRM  G ++ LF+G +  + ++I   GK S+R +     + + K+S + 
Sbjct: 22  SDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKKSVRVRF-TAGKLEDKESPLH 80

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
                +  +  ++++ IQKS+E+G+  I P+++         +     + + +   I+A 
Sbjct: 81  LHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLDAERMEKKISQWQKIAIAAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ     +P + P  TLE      D+  ++        S N+L        +  V +LIG
Sbjct: 141 EQSGRNCVPQVRPAMTLEAWCAEQDNALKLNLHPRATQSINTLP-----LPVARVRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  + E  T+ S    T + LGPR+LR++T A+ AM  +Q   GD
Sbjct: 196 PEGGLTASEI-TMTSEYGFTDILLGPRVLRTETTALTAMTALQVRFGD 242


>gi|15617012|ref|NP_240225.1| hypothetical protein BU410 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681764|ref|YP_002468150.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|219682319|ref|YP_002468703.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471466|ref|ZP_05635465.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11387295|sp|P57488|RSME_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|25345375|pir||G84977 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039077|dbj|BAB13111.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219622052|gb|ACL30208.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624607|gb|ACL30762.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311086144|gb|ADP66226.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086718|gb|ADP66799.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087303|gb|ADP67383.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087813|gb|ADP67892.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 253

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 21/232 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S +  HY+  VLRMK  D + +FN     + +KI  + K I     ++   +  +S +  
Sbjct: 30  SDENRHYVTKVLRMKIEDILEIFNNTHYIFFAKIIDISKKIIKIQTFKKILKNLESPLHI 89

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV---------RTYTIS 133
               +  K  ++D+ IQKS+E+G+  I P+   + +N H+   R+             IS
Sbjct: 90  HLGQVISKNEKMDFTIQKSIEIGVKTITPL---FFENDHFQKKRINFSNKIKRWEKIAIS 146

Query: 134 AAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A  QC+   +P I  P     +   N +++ +I+F  ++  +   L +      I  + I
Sbjct: 147 ACRQCNRNIIPKIKIPMNVFHWCENNQNNDKKIIFHPKSTLTMKCLTE-----PIKYIQI 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +IG E G+ ++E + +    F+ P+ LGPRILR++TA+V A+  +Q + GD+
Sbjct: 202 IIGSERGFFNDEFQKIIKYGFI-PIRLGPRILRTETASVVAITALQTMFGDF 252


>gi|145638791|ref|ZP_01794400.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII]
 gi|145272386|gb|EDK12294.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII]
 gi|309750281|gb|ADO80265.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2866]
          Length = 245

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ I LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQIELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGREVADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC   ++P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   K  LH  AH        IP   V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA++ +Q   GD
Sbjct: 221 RVLRTETASLAAISALQICFGD 242


>gi|75911238|ref|YP_325534.1| 16S ribosomal RNA methyltransferase RsmE [Anabaena variabilis ATCC
           29413]
 gi|75704963|gb|ABA24639.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 235

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S L+R+ +      + Q   +  Q HYL  VLR++EGD  ++ +G    WL++++   + 
Sbjct: 2   SQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLARLTE--EQ 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            +   E   +++   +    I  P K +  D +++   E+G+  I PV++  T    +  
Sbjct: 60  AQVLEELAVKTELPVAITLMIALP-KGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSPQ 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEK 180
            ++R R     AAEQ +   +P I  P      + N    H        E    +N L  
Sbjct: 119 KLERWRRIAAEAAEQSERAFVPTILEPVAFSDAVNNVTAFHRYICEARGEYVHLQNLLTD 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +        + I IGPEGG+  +E E   +  F  P+SLG RILR+ TA + A++L+ A 
Sbjct: 179 ISG-----EIVIAIGPEGGWTDKELEEAVTFGF-QPVSLGGRILRAVTAPLVALSLISAA 232

Query: 241 C 241
           C
Sbjct: 233 C 233


>gi|148825417|ref|YP_001290170.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae
           PittEE]
 gi|229846392|ref|ZP_04466500.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae
           7P49H1]
 gi|148715577|gb|ABQ97787.1| hypothetical protein CGSHiEE_01535 [Haemophilus influenzae PittEE]
 gi|229810485|gb|EEP46203.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae
           7P49H1]
          Length = 245

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S+++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC   ++P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEK--LHAIAH--------IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   K  LH  AH        IP+  V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPSEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA+  +Q   GD
Sbjct: 221 RVLRTETASLAAITALQICFGD 242


>gi|300921287|ref|ZP_07137656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1]
 gi|300411749|gb|EFJ95059.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1]
          Length = 255

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 14  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 74  VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 132

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 133 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMVLEAWCAEQDEGLKLNLHPRASNSIN 192

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 193 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 246

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 247 LQVRFGD 253


>gi|261363907|ref|ZP_05976790.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996]
 gi|288567910|gb|EFC89470.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996]
          Length = 241

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88
           +VLR++ G+ ++LFNG    + +++  + K      +  + E  + S  K + VQ + S 
Sbjct: 27  NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRACAEVLREEETDNESPLKITLVQSVSS- 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
               R+D+ +QKSVE+G+ AI+PVI+         +     + R +   +SA EQ     
Sbjct: 86  --GERMDFTLQKSVELGVVAIQPVISERCVVRLSGERADKRVARWQEIVVSACEQSGRNI 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGGYH 201
           +P + P       LK        +       S N  + L A+    +  I ++GPEGG+ 
Sbjct: 144 VPEVRPLLPYREALKQMSSETTKLLM-----SLNRAQSLRAVKPFSDDLIFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            EE++      F + ++LG R+LR++TA++AA+A +Q + GD+
Sbjct: 199 DEEEQLAFEAGFQS-VTLGKRVLRTETASLAAIAAMQTLWGDF 240


>gi|148827457|ref|YP_001292210.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae
           PittGG]
 gi|148718699|gb|ABQ99826.1| hypothetical protein CGSHiGG_04330 [Haemophilus influenzae PittGG]
          Length = 245

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 39/256 (15%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+ +        T+ 
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDTER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   I+A EQC    +P I P   L+    +W            C   +   
Sbjct: 124 MDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ----DW------------CAENDGAL 167

Query: 180 K--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+LR++
Sbjct: 168 KLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTE 226

Query: 228 TAAVAAMALVQAICGD 243
           TA++AA++ +Q   GD
Sbjct: 227 TASLAAISALQICFGD 242


>gi|159030659|emb|CAO88329.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 233

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL +DF          + +Q HYL  V+R+K  D  +  NG+   WL++I  +  S    
Sbjct: 4   RLLLDFNTLENGLITLTPEQSHYLKKVVRLKSHDRFIALNGQGQAWLAEI--IDNSAHL- 60

Query: 69  VEYQSRSQTKQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMD 125
              ++ ++T +  VQ  +   I  N  D +++ + E+G+  I P++T       +   +D
Sbjct: 61  --LEAINETSELPVQVNLMVAIPKNGFDDIVRAATELGVYRIIPLLTERGLVNPSPQKID 118

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLH 182
           R R     A EQ +   +P I  P     +LK   N    C I     T      L +L 
Sbjct: 119 RWRKIAREAVEQSERQIIPIIEEPQPFLAILKRGANPQTTCYIGVTRRTVAP--LLSQLQ 176

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               I    + IGPEGG+   E E   +  FV P+SLG RILR+ TA + A+A++ A
Sbjct: 177 TSTEI---TMAIGPEGGWTETEIEQAIAADFV-PVSLGKRILRTITAPLVALAIINA 229


>gi|145631448|ref|ZP_01787218.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae
           R3021]
 gi|144982985|gb|EDJ90494.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae
           R3021]
          Length = 245

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCLLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S+++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC   ++P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEK--LHAIAH--------IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   K  LH  AH        IP+  V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPSEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA+  +Q   GD
Sbjct: 221 RVLRTETASLAAITALQICFGD 242


>gi|229006652|ref|ZP_04164286.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4]
 gi|228754513|gb|EEM03924.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4]
          Length = 249

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+         +  GD  H++A V+RM  GD+I    NGK     +++I+  +V 
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAMCTIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  SAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174
            +     ++R++     AAEQ     +P ++ P + + LL  N D++ C + + +E    
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMNSDYDVCLVAYEEEAKQG 177

Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E  N  + L A+     + ++ GPEGG   EE   L    F+ P SLGPRILR++TA + 
Sbjct: 178 EKANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|170765588|ref|ZP_02900399.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627]
 gi|170124734|gb|EDS93665.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627]
          Length = 243

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 16/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S+
Sbjct: 3   IPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
             KV  + R    +S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 63  EVKV-LEGRLDDHESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P  +LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMSLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|221069844|ref|ZP_03545949.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1]
 gi|220714867|gb|EED70235.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1]
          Length = 246

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 23/222 (10%)

Query: 34  HVLRMKEGDNILLFNGK------DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
            VLR + GD I LF G+       GE+ + I+ +G+S +  +V+  S ++ + +   ++ 
Sbjct: 27  QVLRHQPGDIITLFEGQTGNGFTGGEFQATITRMGRSDVGVRVDSHSPAEREAARAVHLV 86

Query: 87  SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
             +  N R+D++++K+ E+G+ +I+PV+   +            ++R ++  +SA EQC 
Sbjct: 87  VGMPANERMDWLVEKATELGVASIQPVMAARSVLKLKGDRADKKIERWQSIAVSACEQCG 146

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSLEKLHAIAHIPNVAILIG 195
              +P I+ P +L     +W  + Q   AD         E +     A  +   V +L G
Sbjct: 147 RNQVPVIHAPLSL----ADWLRSKQAPAADAARLVLSLREGNQPLRIAAGNAHAVWVLHG 202

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG  ++E++      +  P SLG R+LR++TA+VA ++L+
Sbjct: 203 PEGGLTAQEEDWALEQGW-KPASLGSRVLRAETASVATLSLL 243


>gi|297621017|ref|YP_003709154.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044]
 gi|297376318|gb|ADI38148.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044]
          Length = 241

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 14/236 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R ++D PL + ++    G + H+LAHV R + G+ + L NGK    ++++  + K+    
Sbjct: 5   RFYLDSPLELDSRIAIGGQELHHLAHVSRARAGEEVELINGKGTLAVAEVLEIKKNEASL 64

Query: 69  VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN---THYNM 124
           + + + S+   +    I   I + NRLD +++K  E+GM  +R    + ++        +
Sbjct: 65  LIHSTISEKPSAFPIIIAQAIPRPNRLDTIVEKCTELGMDELRLFPGKLSEKKDLKESQL 124

Query: 125 DRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL 181
            R+    ISAA+Q   L +P I  YPP      +  W   +  + F D +  +    ++ 
Sbjct: 125 ARLTKIAISAAKQSGRLFIPSITFYPP------ISKWPPSDIPLYFGDLSDNAPLFFKRW 178

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +       +A +IGPE G H EE   L  L  +  + L   ILR+DTA + A++L+
Sbjct: 179 NTSPPKQGIAFVIGPESGLHEEEVLQLEKLHAIG-VKLHQNILRTDTAPLTALSLI 233


>gi|114319523|ref|YP_741206.1| hypothetical protein Mlg_0361 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225917|gb|ABI55716.1| 16S rRNA m(3)U-1498 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 248

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 28/252 (11%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           R+ VD PL          +   +L    R++ GD ++LF+G+ GE+ +++  +  +  R 
Sbjct: 5   RIHVDTPLAAGATLTLPAETTQHL-KAFRLRPGDELVLFDGRGGEYRARLEALERREARL 63

Query: 68  KV----EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT--------- 114
            +      +  S    + VQ +    +  R+D+ +QK+VE+G+  I PV T         
Sbjct: 64  ALLGHHPVERESPLALTLVQGV---ARGERMDFTVQKAVELGVRRIVPVFTDNGVVRLEA 120

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADET 171
           R  +    +  RV    ++A EQC    +P + PP  L  +   L   +    +V    T
Sbjct: 121 RRREKRRQHWQRV---AVAACEQCGRNRVPEVAPPRPLAEVWPELAGGEAGQGLVL---T 174

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            G  +      A   +    +LIGPEGG  S+ +          P+ LGPRILR++TA +
Sbjct: 175 PGGRSLRALADAHPELRRAWLLIGPEGGL-SDAEVARACEAGAEPVGLGPRILRTETAGI 233

Query: 232 AAMALVQAICGD 243
            A+A +Q + GD
Sbjct: 234 TALAALQLLHGD 245


>gi|323452130|gb|EGB08005.1| hypothetical protein AURANDRAFT_14390 [Aureococcus anophagefferens]
          Length = 223

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 10/209 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSDVQY 84
           Q+ Y+A V+R++EGD +  F    GEW   +      G ++   V+ +     +   +  
Sbjct: 5   QHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDETPRLDL 64

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQCDILT 142
            F+P++  R   +I+K+VE+G   + PV T   +          +    + AAEQC+ L 
Sbjct: 65  YFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQCERLR 124

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCG-SENSLEKLHAIAHIPNVAILIGPEGGYH 201
           +P +     L   L +       V A+   G S   L+ L         A+L+GPEGG+ 
Sbjct: 125 VPVVEDVVDLASPLGDLPL---FVCAERADGASPRLLDALLGAELGDGAALLVGPEGGFS 181

Query: 202 SEEKETLH-SLPFVTPLSLGPRILRSDTA 229
             +   +  S P  T +SLG  ILR++TA
Sbjct: 182 DADLAAVRASNPDATFVSLGAGILRAETA 210


>gi|212638681|ref|YP_002315201.1| hypothetical protein Aflv_0838 [Anoxybacillus flavithermus WK1]
 gi|212560161|gb|ACJ33216.1| Uncharacterized protein conserved in bacteria [Anoxybacillus
           flavithermus WK1]
          Length = 252

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 15/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L+R FV     +      SGD  H++  V+RM EGD +L  N +    L +I  +    +
Sbjct: 4   LQRYFVRNEQIVGDHVMISGDDVHHIGRVMRMNEGDRLLCCNERSETMLCEIEQISNDFV 63

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++     +  +     Y+ S  +K ++ + ++QK  E+G     P+IT  +      +
Sbjct: 64  RCRIIQWIEANVELPVHVYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIVKWDEK 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETC-GS 174
                ++R +     AAEQ     +P +Y P T+  L+  W H+     I + +E   G 
Sbjct: 124 KGDKKVERWQKIVKEAAEQSHRAYMPSVYAPMTIRELIA-WAHDIHYKCIAYEEEAKEGH 182

Query: 175 ENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             S    L  +    ++ I+ GPEGG   +E   L    FV   SLGPRILR++TA + A
Sbjct: 183 HRSFAHLLQTMNKEDSLLIVFGPEGGLSEQEVALLKEHGFVA-CSLGPRILRAETAPLYA 241

Query: 234 MALV 237
           ++ V
Sbjct: 242 LSAV 245


>gi|81242430|gb|ABB63140.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 252

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ ++       
Sbjct: 71  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLD 129

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 244 LQVRFGD 250


>gi|160895341|ref|ZP_02076112.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50]
 gi|156863034|gb|EDO56465.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50]
          Length = 248

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 123/241 (51%), Gaps = 11/241 (4%)

Query: 7   LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--K 63
           + R FVDF   +  +    +G+  +++ +VLR+K  D I++ +G+  ++  +IS +   K
Sbjct: 1   MNRFFVDFDGRVFDKSIDITGEDVNHIKNVLRLKVNDEIIISDGRGRDYRCQISVMDHEK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +   ++        ++++       K ++++++IQK+VE+G+  I PV+T+ T      
Sbjct: 61  VVADILDVCDNFAELETEITLFQGFPKADKMEWIIQKTVELGVTRIVPVMTKRTVVKLDA 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSEN 176
           +      +R +   ++AA+Q     +P +  P T  E L    + +  ++  +E  G   
Sbjct: 121 KKAGKKTERYQAIALAAAKQSGRGVIPEVTAPVTWKEALAMAKELDMNMIPYEEAEGVAY 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S E   +I    ++ I IGPEGG+  EE      +     ++LG RILR++TA +A M++
Sbjct: 181 SKEVFASIKGKKSLGIFIGPEGGFAGEEVVAATDMG-AKMVTLGHRILRTETAGMAVMSI 239

Query: 237 V 237
           +
Sbjct: 240 I 240


>gi|161950046|ref|YP_404631.2| 16S ribosomal RNA methyltransferase RsmE [Shigella dysenteriae
           Sd197]
 gi|309785226|ref|ZP_07679857.1| RNA methyltransferase family protein [Shigella dysenteriae 1617]
 gi|308926346|gb|EFP71822.1| RNA methyltransferase family protein [Shigella dysenteriae 1617]
          Length = 243

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ ++       
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|145640243|ref|ZP_01795827.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae
           R3021]
 gi|145274829|gb|EDK14691.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae
           22.4-21]
          Length = 245

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++     +D
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120

Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             R            I+A EQC   ++P I P   L+    +W            C   +
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA++AA++ +Q   GD
Sbjct: 224 RTETASLAAISALQICFGD 242


>gi|194431744|ref|ZP_03064035.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012]
 gi|194420100|gb|EDX36178.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012]
 gi|320181049|gb|EFW55970.1| Ribosomal RNA small subunit methyltransferase E [Shigella boydii
           ATCC 9905]
 gi|332086875|gb|EGI92011.1| RNA methyltransferase family protein [Shigella boydii 5216-82]
 gi|332087723|gb|EGI92850.1| RNA methyltransferase family protein [Shigella dysenteriae 155-74]
          Length = 243

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S+
Sbjct: 3   IPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
           + KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        +
Sbjct: 63  KVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEHDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|323162608|gb|EFZ48455.1| RNA methyltransferase family protein [Escherichia coli E128010]
          Length = 243

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|194436810|ref|ZP_03068910.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1]
 gi|194424292|gb|EDX40279.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1]
          Length = 243

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        I  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPIERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|160931277|ref|ZP_02078678.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753]
 gi|156869755|gb|EDO63127.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753]
          Length = 242

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 14/228 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEW---LSKISYVGKSIRFKVEYQSRSQTKQSD 81
           +G    ++   LRMK GD + L + +  ++   + ++S    ++    ++Q  ++   S 
Sbjct: 17  TGPDAAHMCRSLRMKPGDTVTLCDTQGFDYQCVVQRLSPEEAALTIIDKHQCENEPSLSV 76

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISAA 135
           + Y   P K  ++D+++QK+VE+G+  I PV     ++R   + +    DR +   + AA
Sbjct: 77  ILYQGLP-KGEKMDWIVQKAVELGVSQIVPVRMERCVSRPDGKASQKKTDRWQKIAVEAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           +QC    LP + PP      L         +F  E  G   S+ +L        V++LIG
Sbjct: 136 KQCGRGILPQVCPPADFHQALIQAAQAEVFLFCYE--GGGESVSRL-ITQKTKTVSVLIG 192

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+   E E       V P++LG RILR++TA +AA++++    G+
Sbjct: 193 PEGGFSLPEAEAARKAGGV-PVTLGKRILRTETAPLAALSVIMYASGN 239


>gi|261493725|ref|ZP_05990243.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494547|ref|ZP_05991031.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309796|gb|EEY11015.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310615|gb|EEY11800.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 225

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 37/239 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRMK+G+ I+LF+G +  + + +  V K         S    ++S++  
Sbjct: 3   SEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPI 62

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136
               +  + +R+++ IQKSVE+G+  I P+      +    +     + + +   I+A E
Sbjct: 63  HLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACE 122

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPN 189
           QC    +P I P       L +W            C  ++ + KL       + I  +PN
Sbjct: 123 QCGRNEIPEIRPIMK----LTDW------------CKEQDDMLKLNLHPRAKYTIRELPN 166

Query: 190 VA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V      +LIG EGG  +EE     S  F T + LG R+LR++TA++AA+  +Q   GD
Sbjct: 167 VPKAGVRLLIGSEGGLSAEEIAMTESEGF-TEVLLGKRVLRTETASLAAITALQVCFGD 224


>gi|167042827|gb|ABZ07545.1| putative protein of unknown function (DUF558) [uncultured marine
           microorganism HF4000_ANIW137I15]
          Length = 261

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEW---LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI- 89
             +R K GD I + +G+  E+   L+++++ G + R +     R +  +  V        
Sbjct: 27  RAMRHKRGDVIRVSDGEFTEYEVELTELTHQGAAGRIR----GRKEIPEDRVVIRLGQAV 82

Query: 90  -KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD-IL 141
            K  +LD ++QK+VE+G+  I P+    +      +     + R R    +A +QC+ + 
Sbjct: 83  PKGEKLDGVVQKAVELGVHFIHPIFAERSVPRLDERRAADRLKRWRRVAEAARKQCERVR 142

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNVAILIGPEGGY 200
            +    P + L FL ++ D + ++V  +    S   L K L     I +VA+L+GPEGG+
Sbjct: 143 PMEVAAPGSLLSFLDESEDADLKVVLHER---STVGLRKILSDTRDIRSVALLVGPEGGF 199

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              E +T  +  F+ P  LG RILR++TA +AA+A+++ + GD
Sbjct: 200 SETEVQTARTAGFI-PCGLGTRILRTETAPIAAIAILEYVLGD 241


>gi|197263143|ref|ZP_03163217.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200388493|ref|ZP_03215105.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205357558|ref|ZP_02571479.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16421647|gb|AAL21969.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197241398|gb|EDY24018.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199605591|gb|EDZ04136.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205331209|gb|EDZ17973.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261248225|emb|CBG26062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301159649|emb|CBW19168.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914116|dbj|BAJ38090.1| 16S rRNA methyltransferase RsmE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225767|gb|EFX50821.1| Ribosomal RNA small subunit methyltransferase E [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131450|gb|ADX18880.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989961|gb|AEF08944.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 259

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        ++  +    + + 
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             I+A EQC    +P I PP  LE      D   ++        S N+L        +  
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVER 204

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 205 VRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 257


>gi|145636562|ref|ZP_01792230.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH]
 gi|145270387|gb|EDK10322.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH]
          Length = 245

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++     +D
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120

Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             R            I+A EQC   ++P I P   L+    +W            C   +
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA++AA++ +Q   GD
Sbjct: 224 RTETASLAAISALQICFGD 242


>gi|119945034|ref|YP_942714.1| hypothetical protein Ping_1288 [Psychromonas ingrahamii 37]
 gi|119863638|gb|ABM03115.1| hypothetical protein DUF558 [Psychromonas ingrahamii 37]
          Length = 242

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R +    L + T+   S D   ++ HVLR++ G  I+LFNG  GE  + ++   K  
Sbjct: 2   RIPRFYDPQTLTVATEVNLSKDAIQHI-HVLRLRPGAQIILFNGLGGEVQATLTSAQKRS 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              +         +S +      +  + +R++++IQK+VE+G+  I P+++         
Sbjct: 61  CTALINSFNQTDNESPLHLHLGQVISRGDRMEFVIQKAVELGVNEITPLLSERCGVKLDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q       + +   ++A EQ     +P I+    L    ++ +   ++        S N+
Sbjct: 121 QRMAKKQQQWQKIALAACEQSGRNIIPVIHETEALTTWCESAEQATKLTLHPRAKYSINT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        I  + +LIGPEGG   +E     +L F   L LGPRILR++TAA++A+  +
Sbjct: 181 LP-----PEIKRIRLLIGPEGGLSDQEVTLTETLNFTETL-LGPRILRTETAALSAITAL 234

Query: 238 QAICGD 243
           Q   GD
Sbjct: 235 QCRFGD 240


>gi|254360572|ref|ZP_04976721.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213]
 gi|153091112|gb|EDN73117.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213]
          Length = 243

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 119/258 (46%), Gaps = 37/258 (14%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL        S D  +++  VLRMK+G+ I+LF+G +  + + +  V K  
Sbjct: 2   RIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+      +    
Sbjct: 62  IIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P       L +W            C  ++ 
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMK----LTDW------------CKEQDD 165

Query: 178 LEKL-------HAIAHIPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           + KL       + I  +PNV      +LIG EGG  +EE     S  F T + LG R+LR
Sbjct: 166 MLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGF-TEVLLGKRVLR 224

Query: 226 SDTAAVAAMALVQAICGD 243
           ++TA++AA+  +Q   GD
Sbjct: 225 TETASLAAITALQVCFGD 242


>gi|161353586|ref|NP_462010.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|267995259|gb|ACY90144.1| hypothetical protein STM14_3738 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
          Length = 243

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 24/237 (10%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 16  TQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 75

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------- 128
                 +  + S  +  ++++ IQKS+E+G+  I P+   +++     +D  R       
Sbjct: 76  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPL---FSERCGVKLDSERLNKKRQQ 130

Query: 129 --TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                I+A EQC    +P I PP  LE      D   ++        S N+L        
Sbjct: 131 WQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 186 VERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|331678938|ref|ZP_08379612.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591]
 gi|332280360|ref|ZP_08392773.1| conserved hypothetical protein [Shigella sp. D9]
 gi|81246842|gb|ABB67550.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|331073768|gb|EGI45089.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591]
 gi|332102712|gb|EGJ06058.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 252

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 71  VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 129

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 244 LQVRFGD 250


>gi|156932614|ref|YP_001436530.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530868|gb|ABU75694.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 22/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL +  +     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 4   RIPRIYHPEPLVVGREIALDEDAANHVGRVLRMSAGQALQLFDGSNHVFAAEITQASKK- 62

Query: 66  RFKVEYQSRSQTKQSDVQYI-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              V   SR +  +    ++    +  +  ++++ IQKS+E+G+  I P+   +++    
Sbjct: 63  SVLVNVVSREEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPL---FSERCGV 119

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P I P   LE      D   ++        
Sbjct: 120 KLDEERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMELEAWCAEPDSGLKLNLHPRAAH 179

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           S N+L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A
Sbjct: 180 SINTLPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTA 233

Query: 234 MALVQAICGD 243
           +  +Q   GD
Sbjct: 234 ITALQVRFGD 243


>gi|325266078|ref|ZP_08132764.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394]
 gi|324982716|gb|EGC18342.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394]
          Length = 241

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 18/222 (8%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88
           HVLR++ GD I+LF+G+     + +  V K     +I   +E  S S  +   +Q + S 
Sbjct: 26  HVLRLQAGDEIVLFDGQGMRVAATLQQVEKRKAACTIDSFLESDSESPLRIHLIQAVSS- 84

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
               R+D+ +QKSVE+G+ +I PV++         +     + R +   +SA EQC    
Sbjct: 85  --GERMDFTLQKSVELGVASITPVLSERCVVRLQGERADKRVQRWQEIAVSACEQCGRDI 142

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P + P   L   L+       +        +++  EK  A    P V +LIGPEGG+ +
Sbjct: 143 VPPVRPILRLADYLRQAAAEDGLKLLMSLQNAQSLREKQPA--QRP-VYLLIGPEGGWTA 199

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            E++      F   ++LG RILR++TA++AA+A +Q + GD+
Sbjct: 200 AEEQAAVQAGF-EAITLGKRILRTETASLAAIAAMQTLWGDF 240


>gi|238795147|ref|ZP_04638737.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           intermedia ATCC 29909]
 gi|238725546|gb|EEQ17110.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           intermedia ATCC 29909]
          Length = 243

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIVRSDKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 62  LLVRLGEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I     L       D + ++        S
Sbjct: 119 LDGERLAKKLQQWQKIAIAACEQCGRNRIPEIRSAMQLSDWCAEQDDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        + NV +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----PTLNNVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|161984861|ref|YP_409378.2| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii Sb227]
 gi|187732729|ref|YP_001881719.1| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii CDC
           3083-94]
 gi|191167926|ref|ZP_03029729.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A]
 gi|193063533|ref|ZP_03044622.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22]
 gi|193067437|ref|ZP_03048405.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019]
 gi|194426231|ref|ZP_03058786.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171]
 gi|209920405|ref|YP_002294489.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SE11]
 gi|218696544|ref|YP_002404211.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 55989]
 gi|256019252|ref|ZP_05433117.1| 16S ribosomal RNA methyltransferase RsmE [Shigella sp. D9]
 gi|260845616|ref|YP_003223394.1| hypothetical protein ECO103_3526 [Escherichia coli O103:H2 str.
           12009]
 gi|260857079|ref|YP_003230970.1| hypothetical protein ECO26_4045 [Escherichia coli O26:H11 str.
           11368]
 gi|260869633|ref|YP_003236035.1| hypothetical protein ECO111_3694 [Escherichia coli O111:H- str.
           11128]
 gi|293449276|ref|ZP_06663697.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B088]
 gi|300824847|ref|ZP_07104950.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7]
 gi|301306391|ref|ZP_07212460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1]
 gi|301327362|ref|ZP_07220612.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1]
 gi|307310433|ref|ZP_07590081.1| protein of unknown function DUF558 [Escherichia coli W]
 gi|309794035|ref|ZP_07688460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7]
 gi|331669689|ref|ZP_08370535.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271]
 gi|187429721|gb|ACD08995.1| 16S rRNA methyltransferase RsmE [Shigella boydii CDC 3083-94]
 gi|190902011|gb|EDV61757.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A]
 gi|192930810|gb|EDV83415.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22]
 gi|192959394|gb|EDV89829.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019]
 gi|194415539|gb|EDX31806.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171]
 gi|209913664|dbj|BAG78738.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353276|emb|CAU99232.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|257755728|dbj|BAI27230.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257760763|dbj|BAI32260.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257765989|dbj|BAI37484.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|291322366|gb|EFE61795.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B088]
 gi|300522685|gb|EFK43754.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7]
 gi|300838386|gb|EFK66146.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1]
 gi|300846046|gb|EFK73806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1]
 gi|306909328|gb|EFN39823.1| protein of unknown function DUF558 [Escherichia coli W]
 gi|308122442|gb|EFO59704.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7]
 gi|315062252|gb|ADT76579.1| 16S rRNA methyltransferase [Escherichia coli W]
 gi|315256838|gb|EFU36806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 85-1]
 gi|320174058|gb|EFW49228.1| Ribosomal RNA small subunit methyltransferase E [Shigella
           dysenteriae CDC 74-1112]
 gi|320184293|gb|EFW59105.1| Ribosomal RNA small subunit methyltransferase E [Shigella flexneri
           CDC 796-83]
 gi|320202610|gb|EFW77180.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           EC4100B]
 gi|323168002|gb|EFZ53691.1| RNA methyltransferase family protein [Shigella sonnei 53G]
 gi|323180406|gb|EFZ65958.1| RNA methyltransferase family protein [Escherichia coli 1180]
 gi|323183517|gb|EFZ68914.1| RNA methyltransferase family protein [Escherichia coli 1357]
 gi|323377164|gb|ADX49432.1| protein of unknown function DUF558 [Escherichia coli KO11]
 gi|323946556|gb|EGB42579.1| RsmE family protein RNA methyltransferase [Escherichia coli H120]
 gi|324119741|gb|EGC13621.1| RsmE family protein RNA methyltransferase [Escherichia coli E1167]
 gi|331063357|gb|EGI35270.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271]
 gi|332091330|gb|EGI96418.1| RNA methyltransferase family protein [Shigella boydii 3594-74]
          Length = 243

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|28211650|ref|NP_782594.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium tetani E88]
 gi|28204092|gb|AAO36531.1| conserved surface protein [Clostridium tetani E88]
          Length = 250

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSD 81
           +   ++  VLR+   D +++ N +  E+L +ISY+ K     +I+ K++  + S  +   
Sbjct: 21  EDVKHIYKVLRLTTEDEVIINNCEGEEFLGEISYIDKKEVIVNIKEKLDINNESSIQV-- 78

Query: 82  VQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAA 135
             Y+F  + K N++D ++QK+ E+G+  I PVIT       Y      +DR+    I ++
Sbjct: 79  --YLFQGMPKANKMDLIVQKNCELGVREITPVITERVVVKQYGGEYKKLDRLEKIAIESS 136

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAIL 193
           +QC    +P +  P   + LL+       IV  + ++       L        I  + ++
Sbjct: 137 KQCKRTLIPKVNNPVEFKDLLEELKIMDLIVVPYENQQGFGMKKLITKIEKNKIIKIGVV 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           IGPEGG+  +E E L  +     ++LGPRILR++TA   A++L+    GD 
Sbjct: 197 IGPEGGFEEDEIEELEKIG-ANIITLGPRILRTETAGFTAVSLLMYELGDL 246


>gi|271502142|ref|YP_003335168.1| hypothetical protein Dd586_3632 [Dickeya dadantii Ech586]
 gi|270345697|gb|ACZ78462.1| protein of unknown function DUF558 [Dickeya dadantii Ech586]
          Length = 244

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQ 83
           S D  +++  VLRM  G  + LF+G +  + ++I   GK    +V Y + +++ ++S + 
Sbjct: 22  SEDAANHVGRVLRMSAGQALQLFDGSNQVFEAEIVQAGKK-SVRVRYATGQTEDRESPLH 80

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
                +  +  ++++ IQKS+E+G+  I P+++         +     + + +   I+A 
Sbjct: 81  LHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGVKLDGERLEKKIAQWQKIAIAAC 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P  TLE      D+  ++          N+L        +  + +LIG
Sbjct: 141 EQCGRNRVPDIRPVQTLESWCAESDNGLKLNLHPRASQHINTLP-----LPVSRIRLLIG 195

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  ++E     +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 196 PEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITALQVRFGD 242


>gi|324005502|gb|EGB74721.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 57-2]
          Length = 261

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 20  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 79

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 80  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 138

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 139 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 198

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 199 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 252

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 253 LQVRFGD 259


>gi|301027303|ref|ZP_07190649.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1]
 gi|300395109|gb|EFJ78647.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1]
          Length = 255

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 14  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 74  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 132

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 133 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 192

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 193 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 246

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 247 LQVRFGD 253


>gi|300995473|ref|ZP_07181121.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1]
 gi|300304835|gb|EFJ59355.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1]
          Length = 254

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 13  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 72

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 73  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 131

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 132 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 191

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 192 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 245

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 246 LQVRFGD 252


>gi|222034641|emb|CAP77383.1| UPF0088 protein yggJ [Escherichia coli LF82]
 gi|312947477|gb|ADR28304.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 243

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 118/247 (47%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E   + +L   T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEI-AMTALYQFTDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|94501841|ref|ZP_01308353.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65]
 gi|94426062|gb|EAT11058.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65]
          Length = 241

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 23/227 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY---QSRSQTKQSDVQYIF 86
           H++  VLRM+ G  + +FNG    +    + +  + R KV+    +S + + +S +    
Sbjct: 26  HHVGKVLRMEAGRQLKVFNGSGHRYFD--ATIVHADRKKVQVRLGESHASSTESPLSIHL 83

Query: 87  SPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-------YTISAAEQ 137
             +  K +++++ IQK+VE+G+  I P+ + +  +   N +R+           ISA EQ
Sbjct: 84  GQVMSKGDKMEFTIQKAVELGVTDITPLWSEHC-DVKLNQERLEKKHKQWLGIIISACEQ 142

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                +P ++P   +E  L N + + + +        +   E L +     +VAI +GPE
Sbjct: 143 SGRDVIPHLHPTIKIEDWLANMETDVKWLL-------DPGAEPLQSKVAPKSVAIAVGPE 195

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG+   E +      F + L +GPR+LR++TAA+ A+ ++Q+  GD+
Sbjct: 196 GGFSEGEVKLAQQQGFQSQL-IGPRVLRTETAALTAITILQSRWGDF 241


>gi|224369186|ref|YP_002603350.1| hypothetical protein HRM2_20880 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691903|gb|ACN15186.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 250

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 23/252 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R ++        +   +G +  +L  VLR+  GD + L +G+     ++I  +  +  
Sbjct: 1   MRRFYIKTDSICNGRAVITGQEARHLGTVLRLGPGDRVELVDGRGTIARAEIETLSHNTA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 S S   +S V    +   +K  ++D +++   E+G+    P  +  +      +
Sbjct: 61  VFTILDSSSPGAESPVHITLAQGMLKDKKMDMLVRHLTELGICQWIPFYSSRSIPKPDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177
             +  M+R       A +QC    LP I  P   + LLK + D++ +I F       EN+
Sbjct: 121 RIYSRMERWNKIAREALKQCGRSMLPLIEDPIPFDQLLKTSTDYDGKIAFW------ENA 174

Query: 178 LEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              +H I   P+      + +LIGPEGG+ S E +      F +  SLGPRILR++TA++
Sbjct: 175 TAPIHTI-QTPSMEPAKKIIVLIGPEGGFSSFEIDAARENGFSS-CSLGPRILRAETASL 232

Query: 232 AAMALVQAICGD 243
            A ALVQ + GD
Sbjct: 233 TAAALVQYLFGD 244


>gi|215488244|ref|YP_002330675.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O127:H6
           str. E2348/69]
 gi|215266316|emb|CAS10747.1| 16S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69]
          Length = 243

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVISRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|237706401|ref|ZP_04536882.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|254037995|ref|ZP_04872053.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331643639|ref|ZP_08344770.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736]
 gi|331648701|ref|ZP_08349789.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605]
 gi|331654458|ref|ZP_08355458.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718]
 gi|331674427|ref|ZP_08375187.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280]
 gi|12517492|gb|AAG58077.1|AE005525_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26109775|gb|AAN81980.1|AE016766_68 Hypothetical protein yggJ [Escherichia coli CFT073]
 gi|882475|gb|AAA69113.1| ORF_o252 [Escherichia coli str. K-12 substr. MG1655]
 gi|13363294|dbj|BAB37245.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|91073902|gb|ABE08783.1| hypothetical protein UTI89_C3335 [Escherichia coli UTI89]
 gi|209760100|gb|ACI78362.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|209760102|gb|ACI78363.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|209760104|gb|ACI78364.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|209760106|gb|ACI78365.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|226839619|gb|EEH71640.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226899441|gb|EEH85700.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|281602283|gb|ADA75267.1| hypothetical protein SFxv_3218 [Shigella flexneri 2002017]
 gi|331037110|gb|EGI09334.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736]
 gi|331042448|gb|EGI14590.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605]
 gi|331047840|gb|EGI19917.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718]
 gi|331068521|gb|EGI39916.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280]
          Length = 252

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 71  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 129

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 244 LQVRFGD 250


>gi|194290708|ref|YP_002006615.1| 16S ribosomal RNA methyltransferase rsme [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224543|emb|CAQ70554.1| conserved hypothetical protein, DUF558 [Cupriavidus taiwanensis LMG
           19424]
          Length = 253

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 30/233 (12%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           A VLR+  GD I LF+G+ G   + +  +GK         + ++    D      P +  
Sbjct: 30  AQVLRLAPGDAITLFDGRGGSHAATLVELGK-------RHALARIGAHDAAEAEPPFRVT 82

Query: 92  --------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137
                   +++D++I+K+VE+G+ AI+P      V+    +         +    +A EQ
Sbjct: 83  LAQGLAGGDKMDWLIEKAVELGVAAIQPLQASRSVVRLSGERAQKRQSHWQALVQAACEQ 142

Query: 138 CDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSENSL--EKLHAIAHIPNVA 191
           C    LP +   T L+  L    ++ +   +++ +     +  +L  E+  A+     V 
Sbjct: 143 CGRNRLPAVAEVTNLDTWLARVAQSGNGGTRLLLSPRAAQALPALVAERREAL-LADGVT 201

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +LIGPEGG   EE++      F T +SLGPRILR++TA +A +A + A+ G +
Sbjct: 202 LLIGPEGGLAPEEEQAALQAGF-TGVSLGPRILRTETAGLACLATLNALLGGF 253


>gi|146312989|ref|YP_001178063.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter sp. 638]
 gi|145319865|gb|ABP62012.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter sp. 638]
          Length = 243

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 18/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80
           S D  +++  VLRM  G  + LF+G +  + ++I+   K S++  +   E   R      
Sbjct: 21  SDDAANHVGRVLRMGAGQAVQLFDGSNQVFDAEITRADKKSVQVSILRGEVDDRESPLHI 80

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134
            +  + S  +  ++++ IQKS+E+G+  I P+ +         +  +  + + +   I+A
Sbjct: 81  HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAIAA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I PP  LE      +   ++        S N+L        +  V +LI
Sbjct: 139 CEQCGRNRIPEIRPPMDLEAWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 194 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|305666561|ref|YP_003862848.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170]
 gi|88708830|gb|EAR01065.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170]
          Length = 235

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 12/221 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S ++ +++  VLR KE D +L+ NGK   + +KI         K + Q  S TK+    Y
Sbjct: 19  SPEESNHIIKVLRKKEDDILLITNGKGYMFEAKIILANAK---KCKAQITSTTKKHRKMY 75

Query: 85  IF----SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            F    +P K+N R ++ ++K+ E+G+  I P+I   ++      +R+     SA +Q  
Sbjct: 76  WFHLVVAPTKSNDRFEWFLEKATEIGVDEITPIICDNSERKIIKPERMEKVLQSAMKQSL 135

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP + P  + +  + N       +     C  E  LE    +A   +V +LIGPEG 
Sbjct: 136 QAYLPKLNPAVSYKEFMGNSREGLLFI---AHCDEEEKLELKRRVAPDKDVTVLIGPEGD 192

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +  +E E+ +   ++ P+SLG   LR++TAA+ A   V  I
Sbjct: 193 FSRKEIESAYENGYL-PVSLGRNRLRTETAAIVACTTVNLI 232


>gi|188496461|ref|ZP_03003731.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638]
 gi|218701656|ref|YP_002409285.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI39]
 gi|254162856|ref|YP_003045964.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli B str.
           REL606]
 gi|301027729|ref|ZP_07191039.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1]
 gi|331684573|ref|ZP_08385165.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299]
 gi|188491660|gb|EDU66763.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638]
 gi|218371642|emb|CAR19481.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|242378472|emb|CAQ33256.1| 16S rRNA m[3]U1498 methyltransferase monomer, subunit of 16S rRNA
           m[3]U1498 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253974757|gb|ACT40428.1| hypothetical protein ECB_02776 [Escherichia coli B str. REL606]
 gi|253978923|gb|ACT44593.1| hypothetical protein ECD_02776 [Escherichia coli BL21(DE3)]
 gi|299879165|gb|EFI87376.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1]
 gi|309703301|emb|CBJ02637.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|323936051|gb|EGB32346.1| RsmE family protein RNA methyltransferase [Escherichia coli E1520]
 gi|323966463|gb|EGB61896.1| RsmE family protein RNA methyltransferase [Escherichia coli M863]
 gi|323971707|gb|EGB66935.1| RsmE family protein RNA methyltransferase [Escherichia coli TA007]
 gi|323978759|gb|EGB73840.1| RsmE family protein RNA methyltransferase [Escherichia coli
           TW10509]
 gi|327251714|gb|EGE63400.1| RNA methyltransferase family protein [Escherichia coli STEC_7v]
 gi|331078188|gb|EGI49394.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299]
 gi|332344845|gb|AEE58179.1| RNA methyltransferase [Escherichia coli UMNK88]
          Length = 243

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|322834233|ref|YP_004214260.1| hypothetical protein Rahaq_3541 [Rahnella sp. Y9602]
 gi|321169434|gb|ADW75133.1| protein of unknown function DUF558 [Rahnella sp. Y9602]
          Length = 243

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM+ G  I LF+G +  + + I+ V K        Q      +S +  
Sbjct: 21  SEDAANHVGRVLRMQPGQAIQLFDGSNQVFEASITQVDKKSVSVSLNQGVLADNESPLNL 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               +  +  ++++ IQKS+E+G+  I P+ +         +     + + +   I+A E
Sbjct: 81  HLGQVISRGEKMEFTIQKSIELGVNTITPLFSERCGVKLDGERLEKKLQQWQKIAIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    +P I P   LE      D + ++        S N+L        + +V +LIGP
Sbjct: 141 QCGRNRIPEIRPAMQLEAWCNEQDDSLKLNLHPRASHSINTLP-----LPVSHVRLLIGP 195

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 196 EGGLSAEEIAMTSGYGF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|238785646|ref|ZP_04629623.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           bercovieri ATCC 43970]
 gi|238713425|gb|EEQ05460.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           bercovieri ATCC 43970]
          Length = 253

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   ++   S +  +++  VLRM EG ++ LF+G +  + +KI    K  
Sbjct: 12  RIPRIYHPQPLQANSELALSDEAANHVGRVLRMAEGQSLQLFDGSNQVFDAKIIRADKKS 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 72  LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVK 128

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC   T+P I     L       D + ++        S
Sbjct: 129 LDGERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLADWCAEQDDSLKLNLHPRASNS 188

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 189 INTLP-----PSLNKVRLLIGPEGGLSADEITMTSRLGF-TDILLGPRVLRTETTALTAI 242

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 243 TALQVRFGD 251


>gi|218550193|ref|YP_002383984.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii
           ATCC 35469]
 gi|218357734|emb|CAQ90378.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
          Length = 243

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPDPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|145632547|ref|ZP_01788281.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655]
 gi|144986742|gb|EDJ93294.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655]
          Length = 245

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++     +D
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120

Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             R            I+A EQC   ++P I P   L+    +W            C   +
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA++AA++ +Q   GD
Sbjct: 224 RTETASLAAISALQICFGD 242


>gi|30064262|ref|NP_838433.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str.
           2457T]
 gi|38704129|ref|NP_311849.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. Sakai]
 gi|56480218|ref|NP_708711.2| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str.
           301]
 gi|89109723|ref|AP_003503.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|90111515|ref|NP_417421.4| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|110643095|ref|YP_670825.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 536]
 gi|110806854|ref|YP_690374.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 5 str.
           8401]
 gi|117625173|ref|YP_854161.1| hypothetical protein APECO1_3575 [Escherichia coli APEC O1]
 gi|157156709|ref|YP_001464298.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli E24377A]
 gi|157162405|ref|YP_001459723.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli HS]
 gi|161367531|ref|NP_289518.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           EDL933]
 gi|161486126|ref|NP_755407.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli CFT073]
 gi|162138377|ref|YP_542314.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UTI89]
 gi|168747562|ref|ZP_02772584.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753898|ref|ZP_02778905.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760088|ref|ZP_02785095.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766953|ref|ZP_02791960.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773415|ref|ZP_02798422.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781805|ref|ZP_02806812.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785804|ref|ZP_02810811.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC869]
 gi|168797521|ref|ZP_02822528.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC508]
 gi|170018813|ref|YP_001723767.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ATCC
           8739]
 gi|170082498|ref|YP_001731818.1| hypothetical protein ECDH10B_3121 [Escherichia coli str. K-12
           substr. DH10B]
 gi|191171800|ref|ZP_03033346.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11]
 gi|195937084|ref|ZP_03082466.1| 16S rRNA m3U1498 methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807472|ref|ZP_03249809.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813470|ref|ZP_03254799.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818613|ref|ZP_03258933.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396394|ref|YP_002272426.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|217326972|ref|ZP_03443055.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555505|ref|YP_002388418.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI1]
 gi|218559937|ref|YP_002392850.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli S88]
 gi|218691070|ref|YP_002399282.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ED1a]
 gi|218706461|ref|YP_002413980.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UMN026]
 gi|238902068|ref|YP_002927864.1| hypothetical protein BWG_2668 [Escherichia coli BW2952]
 gi|253772216|ref|YP_003035047.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254794898|ref|YP_003079735.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. TW14359]
 gi|256024545|ref|ZP_05438410.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia sp. 4_1_40B]
 gi|261226258|ref|ZP_05940539.1| hypothetical protein EscherichiacoliO157_16928 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256484|ref|ZP_05949017.1| hypothetical protein EscherichiacoliO157EcO_11691 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284267|ref|YP_003501085.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406453|ref|ZP_06650379.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1412]
 gi|293412306|ref|ZP_06655029.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B354]
 gi|293416207|ref|ZP_06658847.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B185]
 gi|298382190|ref|ZP_06991787.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1302]
 gi|300947676|ref|ZP_07161845.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1]
 gi|306812150|ref|ZP_07446348.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101]
 gi|307139631|ref|ZP_07498987.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli H736]
 gi|312964791|ref|ZP_07779031.1| RNA methyltransferase family protein [Escherichia coli 2362-75]
 gi|331664529|ref|ZP_08365435.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143]
 gi|84027952|sp|P0AGL8|RSME_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|84027953|sp|P0AGL7|RSME_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|84027954|sp|P0AGL9|RSME_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|30042519|gb|AAP18243.1| hypothetical protein S3141 [Shigella flexneri 2a str. 2457T]
 gi|56383769|gb|AAN44418.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|85675756|dbj|BAE77009.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
 gi|87082186|gb|AAC75983.2| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|110344687|gb|ABG70924.1| hypothetical protein YggJ [Escherichia coli 536]
 gi|110616402|gb|ABF05069.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115514297|gb|ABJ02372.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157068085|gb|ABV07340.1| conserved hypothetical protein TIGR00046 [Escherichia coli HS]
 gi|157078739|gb|ABV18447.1| conserved hypothetical protein TIGR00046 [Escherichia coli E24377A]
 gi|169753741|gb|ACA76440.1| protein of unknown function DUF558 [Escherichia coli ATCC 8739]
 gi|169890333|gb|ACB04040.1| predicted protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187770823|gb|EDU34667.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017770|gb|EDU55892.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000650|gb|EDU69636.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358446|gb|EDU76865.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363856|gb|EDU82275.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369285|gb|EDU87701.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373969|gb|EDU92385.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC869]
 gi|189379845|gb|EDU98261.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC508]
 gi|190907835|gb|EDV67428.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11]
 gi|208727273|gb|EDZ76874.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734747|gb|EDZ83434.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738736|gb|EDZ86418.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157794|gb|ACI35227.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319339|gb|EEC27764.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|218362273|emb|CAQ99894.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|218366706|emb|CAR04463.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218428634|emb|CAR09563.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|218433558|emb|CAR14461.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|238863019|gb|ACR65017.1| predicted protein [Escherichia coli BW2952]
 gi|253323260|gb|ACT27862.1| protein of unknown function DUF558 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254594298|gb|ACT73659.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|260448011|gb|ACX38433.1| protein of unknown function DUF558 [Escherichia coli DH1]
 gi|284922889|emb|CBG35978.1| conserved hypothetical protein [Escherichia coli 042]
 gi|290764140|gb|ADD58101.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291426459|gb|EFE99491.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1412]
 gi|291432396|gb|EFF05378.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B185]
 gi|291469077|gb|EFF11568.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B354]
 gi|294490749|gb|ADE89505.1| conserved hypothetical protein TIGR00046 [Escherichia coli IHE3034]
 gi|298277330|gb|EFI18846.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1302]
 gi|300452722|gb|EFK16342.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1]
 gi|305854188|gb|EFM54626.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101]
 gi|307554928|gb|ADN47703.1| 16S rRNA methyltransferase RsmE [Escherichia coli ABU 83972]
 gi|307625480|gb|ADN69784.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UM146]
 gi|312290347|gb|EFR18227.1| RNA methyltransferase family protein [Escherichia coli 2362-75]
 gi|313647996|gb|EFS12442.1| RNA methyltransferase family protein [Shigella flexneri 2a str.
           2457T]
 gi|315137543|dbj|BAJ44702.1| hypothetical protein ECDH1ME8569_2846 [Escherichia coli DH1]
 gi|315614893|gb|EFU95531.1| RNA methyltransferase family protein [Escherichia coli 3431]
 gi|320189294|gb|EFW63953.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           O157:H7 str. EC1212]
 gi|320195065|gb|EFW69694.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           WV_060327]
 gi|320640592|gb|EFX10131.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. G5101]
 gi|320656635|gb|EFX24531.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662154|gb|EFX29555.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667230|gb|EFX34193.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. LSU-61]
 gi|323188660|gb|EFZ73945.1| RNA methyltransferase family protein [Escherichia coli RN587/1]
 gi|323941968|gb|EGB38147.1| RsmE family protein RNA methyltransferase [Escherichia coli E482]
 gi|323951616|gb|EGB47491.1| RsmE family protein RNA methyltransferase [Escherichia coli H252]
 gi|323957330|gb|EGB53052.1| RsmE family protein RNA methyltransferase [Escherichia coli H263]
 gi|323960761|gb|EGB56382.1| RsmE family protein RNA methyltransferase [Escherichia coli H489]
 gi|324115039|gb|EGC09004.1| RsmE family protein RNA methyltransferase [Escherichia fergusonii
           B253]
 gi|325498503|gb|EGC96362.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii
           ECD227]
 gi|326338967|gb|EGD62782.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           O157:H7 str. 1044]
 gi|326343152|gb|EGD66920.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           O157:H7 str. 1125]
 gi|330908981|gb|EGH37495.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           AA86]
 gi|331058460|gb|EGI30441.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143]
 gi|332752989|gb|EGJ83373.1| RNA methyltransferase family protein [Shigella flexneri 4343-70]
 gi|332765363|gb|EGJ95581.1| ribosomal RNA small subunit methyltransferase E [Shigella flexneri
           2930-71]
 gi|332999693|gb|EGK19278.1| RNA methyltransferase family protein [Shigella flexneri VA-6]
 gi|333000409|gb|EGK19992.1| RNA methyltransferase family protein [Shigella flexneri K-218]
 gi|333000605|gb|EGK20183.1| RNA methyltransferase family protein [Shigella flexneri K-272]
 gi|333015165|gb|EGK34508.1| RNA methyltransferase family protein [Shigella flexneri K-304]
 gi|333015286|gb|EGK34628.1| RNA methyltransferase family protein [Shigella flexneri K-227]
          Length = 243

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|298490147|ref|YP_003720324.1| hypothetical protein Aazo_0765 ['Nostoc azollae' 0708]
 gi|298232065|gb|ADI63201.1| protein of unknown function DUF558 ['Nostoc azollae' 0708]
          Length = 235

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S L+R+ ++     ++Q   +  Q HYL  VLR ++GD  +  +G    WL+++  +G+ 
Sbjct: 2   SQLQRITINPSQLQESQLLLTPQQQHYLLRVLRSRDGDKFIAMDGISKWWLAQL--IGEQ 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            +     +  ++   S    +  P K N  D +++ S E+G+  I P+++  T  + +  
Sbjct: 60  GQILEPLEVTTELPVSITLMVALP-KGNGCDDIVRCSTELGVTCILPILSDRTLLKPSPQ 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R R   + AAEQ +   +P I  P      +    + C  +     C +  +   L 
Sbjct: 119 KLERWRRIALEAAEQSERAFVPTILEPVAFRTAI----NECASIH-RYICEARGNYPHLT 173

Query: 183 AIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +++     + I IGPEGG+  +E E      F  P+SLG RILR+ TA + A++L+ A 
Sbjct: 174 TVSNKFSSEIIIAIGPEGGWTDQELEIALESGF-QPISLGRRILRAVTAPIVALSLIAAA 232

Query: 241 C 241
           C
Sbjct: 233 C 233


>gi|85059999|ref|YP_455701.1| hypothetical protein SG2021 [Sodalis glossinidius str. 'morsitans']
 gi|84780519|dbj|BAE75296.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 243

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++   PL + T      D  H+++ VLRM     I LF+G +  + ++++ V K   
Sbjct: 3   IPRIYHPAPLTVGTVLALGDDAAHHVSRVLRMTVDAPIALFDGSNHVFAARLTRVDKKGV 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 ++ + ++S +      +  +  ++++ IQKS+E+G+  I P+ +         +
Sbjct: 63  EATVLATQMEDRESLLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSARCGVKLEGE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + +     I A EQC    L  I P  TLE      +   ++        ++ S+
Sbjct: 123 RLEKKLQQWHKIAIGACEQCGRNRLAEIRPAMTLEAWCAEQEAGLKLNLHPR---AQQSI 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L   AH   + +LIGPEGG  +EE     +  F T + LGPR+LR++T A+ A+  +Q
Sbjct: 180 NTLPLPAH--GIRLLIGPEGGLSAEEIALTANYGF-TDILLGPRVLRTETTALTAITALQ 236

Query: 239 AICGD 243
              GD
Sbjct: 237 VRFGD 241


>gi|34495822|ref|NP_900037.1| hypothetical protein CV_0367 [Chromobacterium violaceum ATCC 12472]
 gi|34101677|gb|AAQ58045.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 241

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++D  L +  Q  +  D       VLR+  GD I LFNG+ GE+ + +S V K   
Sbjct: 1   MPRFYLDADLAVGQQ-LSLPDAVVRHVQVLRLNAGDAITLFNGRGGEYQAALSAVMKRDA 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
             V  +    ++++ +    +      +++++ +QK VEMG+   +P      V+    +
Sbjct: 60  HCVIERFDDVSRETPLWLGLAQGISGGDKMEFTLQKGVEMGVSVFQPIAAGRSVVKLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENS 177
                + R +   +SA EQ    T+P + P  TL E+L +  + + +++       S   
Sbjct: 120 RADKRVARWQEIVVSACEQSGRNTVPQVLPILTLNEWLAQRQEADIRLIL------SPRG 173

Query: 178 LEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              L  +A  P  + L+ GPEGG+ ++E++   +  + TPL LGPRILR++TAA+AA+A 
Sbjct: 174 DRSLAQLAERPARSWLMAGPEGGFSAQEEDAALAAGW-TPLKLGPRILRTETAALAAVAA 232

Query: 237 VQAICGDW 244
           +QA+ GD+
Sbjct: 233 MQAVWGDY 240


>gi|309972536|gb|ADO95737.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2846]
          Length = 245

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC   ++P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   K  LH  AH        IP   V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA++ +Q   GD
Sbjct: 221 RVLRTETASLAAISALQICFGD 242


>gi|170682172|ref|YP_001745107.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SMS-3-5]
 gi|170519890|gb|ACB18068.1| 16S rRNA methyltransferase RsmE [Escherichia coli SMS-3-5]
          Length = 243

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNRVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|319775828|ref|YP_004138316.1| RNA methyltransferase [Haemophilus influenzae F3047]
 gi|319896636|ref|YP_004134829.1| RNA methyltransferase [Haemophilus influenzae F3031]
 gi|329123672|ref|ZP_08252232.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116]
 gi|317432138|emb|CBY80489.1| conserved hypothetical RNA methyltransferase [Haemophilus
           influenzae F3031]
 gi|317450419|emb|CBY86635.1| conserved hypothetical RNA methyltransferase [Haemophilus
           influenzae F3047]
 gi|327469871|gb|EGF15336.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116]
          Length = 245

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCYLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++     +D
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120

Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             R            I+A EQC   ++P I P   L+    +W            C   +
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA++AA++ +Q   GD
Sbjct: 224 RTETASLAAISALQICFGD 242


>gi|229031960|ref|ZP_04187946.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271]
 gi|228729350|gb|EEL80341.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271]
          Length = 249

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE  TL    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|157693044|ref|YP_001487506.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus pumilus
           SAFR-032]
 gi|157681802|gb|ABV62946.1| hypothetical protein BPUM_2277 [Bacillus pumilus SAFR-032]
          Length = 256

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 16/246 (6%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F+D     +  K      G+  H+L++V+RMK G  IL       E LSKI  + K
Sbjct: 1   MQRYFIDLTKEEVIAKGAIVIKGEDVHHLSNVMRMKAGQEILCLTTDGFEALSKIDTITK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPV-----ITRY 116
                      +Q ++  V+   +    K ++L+ +IQK  E+G  A  P      IT+ 
Sbjct: 61  EEVLCHLEGWTNQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITKL 120

Query: 117 TQ-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCG 173
            Q  +H   DR       AAEQ     +P +YP +T + L  L +    C + + + +  
Sbjct: 121 DQKKSHKKRDRWEKIAKEAAEQSYRNIIPHVYPVSTFKELTQLASEFDKCVVAYEESSKE 180

Query: 174 SENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S  +  L  +     + ++ GPEGG   +E E L +L  V    LGPRILR++TA +
Sbjct: 181 GEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETLGAVI-CGLGPRILRTETAPL 239

Query: 232 AAMALV 237
            A++ +
Sbjct: 240 YALSAI 245


>gi|300940772|ref|ZP_07155318.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1]
 gi|300454472|gb|EFK17965.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1]
          Length = 253

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 16/226 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           D  +++  VLRM  G  + LF+G +  + ++I+   K S+  KV  + +   ++S +   
Sbjct: 33  DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGQLDDRESPLHIH 91

Query: 86  FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
              +  +  ++++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQ
Sbjct: 92  LGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQ 151

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C    +P I P   LE      D   ++        S N+L        +  V +LIGPE
Sbjct: 152 CGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPE 206

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 207 GGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 251


>gi|315295635|gb|EFU54958.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 16-3]
          Length = 253

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 12  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 71

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 72  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 130

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 131 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 190

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 191 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 244

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 245 LQVRFGD 251


>gi|325290539|ref|YP_004266720.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965940|gb|ADY56719.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 245

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 24/234 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS------IRFKVEYQSRSQTKQ 79
           G++ H+L  VLR+  G+ IL F+     W   I  + K       IR ++  ++ ++ K 
Sbjct: 18  GEELHHLTRVLRLGPGEEILGFDHSGRLWRGAIREINKEQAVCSVIRAEIP-ETEAKVK- 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133
             V  I    K  +++ +IQK  E+GM  + P+ TR +            +DR R     
Sbjct: 76  --VYLIVGLSKGEKMELVIQKGTELGMTGLIPLRTRRSVMKLEGTKAEERVDRWRKIAGE 133

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A +QC  +  P + P    + L      + Q +   E   + +    L +      +A++
Sbjct: 134 AVKQCGRVIQPAVAPVLDWQDLPAYLPADTQWLIPFEGEKTVSLKACLKSFDPSLPMALI 193

Query: 194 IGPEGGYHSEE----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+  +E    KE L +      +SLG RILR++TAA+AA+ +V A  GD
Sbjct: 194 IGPEGGFEPQEVLWAKEKLGA----KSISLGSRILRAETAAIAALTIVLAFYGD 243


>gi|296112908|ref|YP_003626846.1| putative RNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295920602|gb|ADG60953.1| putative RNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326567975|gb|EGE18072.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis BC1]
 gi|326577430|gb|EGE27314.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis O35E]
          Length = 247

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 30/246 (12%)

Query: 7   LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL     G+  A  D   H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           KS   K++     +R+   ++ +  + S  + +R+DY IQK+ EMG+  I  + +   Q 
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117

Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            H   DR        ++  ++A EQC +  +P          LL  W  NCQ        
Sbjct: 118 AHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173

Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            SEN  +  KL     +P N+++LIG EGG    E +      FV P  +G R+LR++TA
Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227

Query: 230 AVAAMA 235
            V A++
Sbjct: 228 PVVALS 233


>gi|171060614|ref|YP_001792963.1| 16S ribosomal RNA methyltransferase RsmE [Leptothrix cholodnii
           SP-6]
 gi|170778059|gb|ACB36198.1| protein of unknown function DUF558 [Leptothrix cholodnii SP-6]
          Length = 247

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 14/238 (5%)

Query: 9   RLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RLFVD PL         +G   H    VLRM+ G+ +++FNG+ GEW  +I+ +G+S ++
Sbjct: 4   RLFVDTPLQAGLDLSLPAGAARHV--QVLRMQPGEELIVFNGQGGEWRVRIARMGRSEVQ 61

Query: 67  FKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             VE +    +     V  +       R D++I+K+ E+G   I P +   +      + 
Sbjct: 62  VLVEQFVDVDRELALHVTLVAGMPANERFDWLIEKATELGAAEIVPTMCERSVLRLSGER 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +  +   ISAA+QC    +P I    +L         +  +     +      L 
Sbjct: 122 AQKKREHWQGIAISAAQQCGRTRVPHIAAVRSLSEERAGESADTPVTQLLLSLADAQPLG 181

Query: 180 KLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +  A        + I  GPEGG+ +E +E L       P SLGPR+LRS+TA +A ++
Sbjct: 182 RRLAARADTGAPLRIYSGPEGGF-TEAEERLLRQGGAQPTSLGPRVLRSETAPLAVLS 238


>gi|145634697|ref|ZP_01790406.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA]
 gi|145268242|gb|EDK08237.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA]
          Length = 245

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC   ++P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPDIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   K  LH  AH        IP   V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA++ +Q   GD
Sbjct: 221 RVLRTETASLAAISALQICFGD 242


>gi|127514152|ref|YP_001095349.1| hypothetical protein Shew_3224 [Shewanella loihica PV-4]
 gi|126639447|gb|ABO25090.1| protein of unknown function DUF558 [Shewanella loihica PV-4]
          Length = 243

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 38/233 (16%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++  VLRM  G+ + LFNG    +L++I +   K++  +V     +   +S +      +
Sbjct: 27  HVGRVLRMGAGEQLELFNGDGHNYLTEIVTASKKNVEVRV-LSKEANDNESPLNLHLGQV 85

Query: 90  --KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             + +R+D+ +QKSVE+G+  I P+ +         +     + + +   ISA EQ    
Sbjct: 86  ISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLTGERLEKKIQQWQKIVISACEQSGRS 145

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-----------IAHIPNV 190
           T+P + P   L                D+ CG      KL+            +   P V
Sbjct: 146 TVPEVRPAMQL----------------DDWCGEATQALKLNLHPRADHGINGLVMETPRV 189

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +LIGPEGG   +E     +  F T + LGPR+LR++TAA+ A++ +Q   GD
Sbjct: 190 RLLIGPEGGLSPQEIAMTETHAF-TDVLLGPRVLRTETAALTAISALQLKFGD 241


>gi|320529958|ref|ZP_08031034.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399]
 gi|320137755|gb|EFW29661.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399]
          Length = 248

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 26/249 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVG 62
           ++RLF  +P  +  + + +G   H+LA V+R + GD + +  G DG      ++ ++   
Sbjct: 1   MRRLF--YPGELTPEIRITGGDAHHLARVMRAQLGD-VHVVAGADGRAARMTVTAVARDA 57

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY- 116
            ++R    Y       +++V  + + +K  + D+++QK+VE+G  A+ P++T     RY 
Sbjct: 58  VTLRLD-SYVEDDAPARAEVILVQALLKGEKTDFIVQKAVELGAAALHPIVTEHVVVRYD 116

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETC 172
            +       R +     AA+QC  L+L  + P   ++ +L + +     +  ++F    C
Sbjct: 117 AKKAAAKTARWQKIADEAAKQCGRLSLMHVAPVGAIDSILGDVEIFGGVDTTVIF----C 172

Query: 173 GSENSLEKLHAIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                ++ + A+        V +++G EGG+   E   L +     P+SLG  ILR++TA
Sbjct: 173 YEGERMQSMRAVLRTVMSARVVLIVGAEGGFSPTEAARL-TAAGAQPVSLGHLILRAETA 231

Query: 230 AVAAMALVQ 238
           A+AA+ +VQ
Sbjct: 232 AIAALTVVQ 240


>gi|311108286|ref|YP_003981139.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762975|gb|ADP18424.1| RNA methyltransferase family protein [Achromobacter xylosoxidans
           A8]
          Length = 243

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 10/228 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F D PL    +        H+   VLR++ G+ + LFNG+ GE+ + +   GK+   +
Sbjct: 5   RFFCDIPLTAGARVALPDALAHHALRVLRLRAGEAVALFNGQGGEYPATLEVDGKAGFAQ 64

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD 125
           + ++  R       +  +      +++D++++K+VE+G   + P+  + +  Q +   +D
Sbjct: 65  LGQFLPREAELAGRITLVQGLPSGDKMDWVVEKAVELGAARVCPIAAQRSVLQLSGPRLD 124

Query: 126 RVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           +   +      SA+EQC    L  +  P TL   L+      +++   E   S++    L
Sbjct: 125 KRVAHWQRIAQSASEQCGRNRLMAVDAPFTLADWLQQPADGLRLMCHPEA--SDDLAGAL 182

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            A+ ++  + +L+GPEGG+  +E         V  +  GPR+LR++TA
Sbjct: 183 RAVPNLQALTLLVGPEGGWSDKELAQAREA-GVQAVRFGPRVLRTETA 229


>gi|118444754|ref|YP_878563.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium novyi NT]
 gi|118135210|gb|ABK62254.1| conserved hypothetical protein TIGR00046 [Clostridium novyi NT]
          Length = 251

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
            G+   ++  VLR+KEGD + + +    E+L  I Y+ KS +  K+  +     +     
Sbjct: 19  EGEDVKHIYKVLRLKEGDKVNINDCNGKEFLGTIDYIDKSKVEVKLLEELEINNEPPIEV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-------HYNMDRVRTYTISAA 135
           Y++  + K +++D ++QK  E+G+  I PV+T    ++          +DR       A 
Sbjct: 79  YLYQGLPKASKMDLIVQKCTELGIREITPVVTGRVASSINDIKRESKKLDRWNRIAFEAC 138

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIPNVAILI 194
           +Q     +P +     ++ L +       IV   E   +    + +  +   +  V I+I
Sbjct: 139 KQNKRTLIPKVNDIMNMDELKEQLKEMDLIVVPYENAENYGIKQMIKNVTGEVKKVGIII 198

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG+  EE E L ++     ++LGPRILR++TA    +AL+    GD
Sbjct: 199 GPEGGFEQEEIEELKNME-AQIVTLGPRILRTETAGFTCLALLMYELGD 246


>gi|326566657|gb|EGE16798.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 12P80B1]
          Length = 241

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 30/246 (12%)

Query: 7   LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL     G+  A  D   H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           KS   K++     +R+   ++ +  + S  + +R+DY IQK+ EMG+  I  + +   Q 
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117

Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            H   DR        ++  ++A EQC +  +P          LL  W  NCQ        
Sbjct: 118 AHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173

Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            SEN  +  KL     +P N+++LIG EGG    E +      FV P  +G R+LR++TA
Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227

Query: 230 AVAAMA 235
            V A++
Sbjct: 228 PVVALS 233


>gi|114561729|ref|YP_749242.1| hypothetical protein Sfri_0543 [Shewanella frigidimarina NCIMB 400]
 gi|114333022|gb|ABI70404.1| protein of unknown function DUF558 [Shewanella frigidimarina NCIMB
           400]
          Length = 246

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  VLRM  GD I LFNG   ++L++I    K           +   +S +    
Sbjct: 24  DGVAHIGRVLRMGMGDQISLFNGDGNDYLAEIIETSKKSIAVTVLSCEANNSESPLDLHL 83

Query: 87  SPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAEQC 138
             +  + +R+++ +QKSVE+G+  I P+      +    +     + + +   ISA EQ 
Sbjct: 84  GQVISRGDRMEFTVQKSVELGVTTITPLFSDRCGVKLSGERLEKKLQQWQKIVISACEQS 143

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               +P + P  TL    +      ++          N L+ L    H   V +LIGPEG
Sbjct: 144 GRSIVPIVRPAMTLAQWCEESTEALKLNLHPRASHGINGLQ-LSGQHH--KVRLLIGPEG 200

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G   EE     +  F T + LGPR+LR++TA++ A+  +Q   GD
Sbjct: 201 GLSDEEIAMTETQHF-TDILLGPRVLRTETASLTAITALQVKFGD 244


>gi|229129591|ref|ZP_04258560.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4]
 gi|229152513|ref|ZP_04280704.1| RNA methyltransferase, RsmE [Bacillus cereus m1550]
 gi|228630944|gb|EEK87582.1| RNA methyltransferase, RsmE [Bacillus cereus m1550]
 gi|228653859|gb|EEL09728.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4]
          Length = 249

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-TCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|150015721|ref|YP_001307975.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902186|gb|ABR33019.1| protein of unknown function DUF558 [Clostridium beijerinckii NCIMB
           8052]
          Length = 255

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQS 73
           +T+GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  + KS     I  +++  +
Sbjct: 13  ETEGKILGDDVKHIYKVLRLSEGEEVVLNNCEGIEYLGEIETITKSEVIVKIIKRLDINN 72

Query: 74  RSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVR 128
            S+ K     ++F  + K  ++D ++QK  E+G+    PV T       +     +DR+ 
Sbjct: 73  ESKVK----VHLFQGLPKGQKMDLIVQKGTELGVSEFIPVTTARVDVKLKGEFKKLDRLN 128

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHA-- 183
              + A +Q     +P +         +        I+   E     G +  + KL    
Sbjct: 129 RIALEACKQSKRSVIPQVKEVIDFNEAINELKKMDLIIVPYENAEDFGIKTLVRKLERDS 188

Query: 184 --IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +  I NV ILIGPEGG+   E + L        ++LG RILR++TA   A AL+Q   
Sbjct: 189 VDLDTINNVGILIGPEGGFEESEIDDLKE-QGAYIVTLGNRILRTETAGFTATALIQYEL 247

Query: 242 GDW 244
           GD 
Sbjct: 248 GDL 250


>gi|91776603|ref|YP_546359.1| hypothetical protein Mfla_2251 [Methylobacillus flagellatus KT]
 gi|91710590|gb|ABE50518.1| 16S rRNA m(3)U-1498 methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 245

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 21/232 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQ---SRSQTKQ 79
           +G+   + +  LRM+ GD+ +LFNG    +LS+++ + K   I   +E Q   + S  K 
Sbjct: 21  AGNAASHASKALRMQVGDHAILFNGDGHNYLSRLTSIRKQEVIAEVLEAQPCPTESPLKI 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133
           +  Q I S    +R+D+ IQK+VEMG+ +I+P+ ++ +      +      +  +   IS
Sbjct: 81  TLAQAISS---GDRMDFTIQKAVEMGVSSIQPIFSQRSIVKLTGERAEKRREHWQNVAIS 137

Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A EQ     +P + P   L E+L +    +  I  A    G+  +L +L +     ++ +
Sbjct: 138 ACEQSGRAYIPPVAPAINLSEWLAQKPGADAYITLAP---GAPLTLPQLTSPTR--HICL 192

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           LIGPEGG    E        F T + +GPRILR++TAA+AA+A +Q + GD+
Sbjct: 193 LIGPEGGLADHEIALAAQHGF-TLVRMGPRILRTETAAIAAIASMQTLWGDF 243


>gi|255065808|ref|ZP_05317663.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256]
 gi|255050126|gb|EET45590.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256]
          Length = 241

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 27/226 (11%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSP 88
           +VLR++ G+ ++LFNG    + +++  + K      +  + E  + S  K + VQ + S 
Sbjct: 27  NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRACAEVLREEEADNESPLKITLVQSVSS- 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
               R+D+ +QKSVE+G+ AI+PVI+         +     + R +   +SA EQ     
Sbjct: 86  --GERMDFTLQKSVELGVVAIQPVISERCVVRLSGERADKRVARWQEIVVSACEQSGRNI 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPEG 198
           +P + P       LK          + ET     SL +  ++  +     ++  ++GPEG
Sbjct: 144 VPEVRPLLPYREALKQ--------MSSETTKLLMSLNRAQSLRTVKPFSDDLIFMVGPEG 195

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           G+  EE+       F + ++LG R+LR++TA++AA+A +Q + GD+
Sbjct: 196 GWTDEEERMAFEAGFQS-VTLGKRVLRTETASLAAIAAMQTLWGDF 240


>gi|302874303|ref|YP_003842936.1| hypothetical protein Clocel_1419 [Clostridium cellulovorans 743B]
 gi|307689431|ref|ZP_07631877.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium cellulovorans
           743B]
 gi|302577160|gb|ADL51172.1| protein of unknown function DUF558 [Clostridium cellulovorans 743B]
          Length = 248

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 16/230 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE----YQSRSQTKQSD 81
           G+   ++  VLR+K GD + + +    E+ +K++ + K    K E      S +++    
Sbjct: 20  GEDVKHIYKVLRLKVGDIVNINDCNGTEYNAKLTSIDKK-EVKAEIIETLDSNNESPIKI 78

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTH--YNMDRVRTYTISAAEQC 138
           V Y   P K  ++DY++QK  E+G+ A  PV T R   NT     +DR+      AA+Q 
Sbjct: 79  VLYQGMP-KATKMDYIVQKGTEVGINAFIPVNTERVVVNTSEFKKLDRLNRIAKEAAKQS 137

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN----SLEKLHAIAHIPNVAILI 194
               +P ++ P   E LLK  +    IV   E   +EN    +L K      + +VAI+I
Sbjct: 138 KRTIIPKVHEPIEFEELLKELEEYSLIVVPYEN--AENFGIKNLAKGVKKEEVDSVAIII 195

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG+   E E L S+     ++LGPRILR++TA V   +L+    GD 
Sbjct: 196 GPEGGFEDSEIERLKSIN-AHIVTLGPRILRTETAGVVCASLIMYELGDM 244


>gi|119899122|ref|YP_934335.1| 16S ribosomal RNA methyltransferase RsmE [Azoarcus sp. BH72]
 gi|119671535|emb|CAL95448.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 243

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 10/222 (4%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYIFSP 88
           H+   VLRM++G+ I+LF+G   E  + +   GKS    +  Y+   +    D+  + + 
Sbjct: 25  HHATRVLRMRDGEPIVLFDGSGAEAEATLVLRGKSAAALISAYREVDRESPLDLVLVQAL 84

Query: 89  IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +++D+++QK+VE+G  A++P      V+    +      +  +   + A EQ     
Sbjct: 85  ATGDKMDWIVQKAVELGARAVQPIQAERSVLRLAGERATRRREHWQQVAVGACEQSGRNR 144

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +    +L+  L     +   V       +   L  L   A    + +L+GPEGG+  
Sbjct: 145 IPEVGEILSLQAYLAAAREDRATVRCVLDPAAAQGLSALPRPAG--ALHLLVGPEGGWSD 202

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +E     +    TP+ LGPR+LR++TA +A +A +QA  GD+
Sbjct: 203 DELAACAA-AHCTPVGLGPRVLRTETAGLAMLAALQARWGDF 243


>gi|221632371|ref|YP_002521592.1| hypothetical protein trd_0341 [Thermomicrobium roseum DSM 5159]
 gi|221155488|gb|ACM04615.1| conserved hypothetical protein TIGR00046 [Thermomicrobium roseum
           DSM 5159]
          Length = 265

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 26/225 (11%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYIFS 87
           H L  VLR++ GD +LL +G+  ++++++  +   +++   V+ Q         +  + +
Sbjct: 28  HQLVRVLRLRPGDRVLLCDGRAIDFVAELIELDPERTVAVLVDAQPARPLPPPPIVLLQA 87

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
            ++ +  D +++K+ E+G+  I P+ T+ T      ++    + R +   + A+EQC   
Sbjct: 88  LLRHDHFDLVVEKATELGIVRIVPLHTQRTVVHLALRDVTQRLARWQRIAMEASEQCGRG 147

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAILIGP 196
           TLP I  P+TL+  L        +VF +          +  AIAH        V + +GP
Sbjct: 148 TLPEIDTPSTLDRALATVRTARLLVFWEAP--------EAEAIAHASFSPDQTVTVAVGP 199

Query: 197 EGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           EGG+ +EE      H   F    SLGP ILR++TAA++ +A VQA
Sbjct: 200 EGGWTAEEIALFRRHGAEF---RSLGPLILRAETAAISGIAAVQA 241


>gi|78188184|ref|YP_378522.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
           chlorochromatii CaD3]
 gi|78170383|gb|ABB27479.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 247

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 19/229 (8%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79
           Q    G+++H+L  VLR +EG+ IL+ +G       +I+ + K  ++ ++   +  +   
Sbjct: 17  QVSIEGEEFHHLVRVLRKREGELILVTDGNGLRCEVRIASISKHDVQGEIISTTTIEPPS 76

Query: 80  SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
           + V    S +K   R ++ ++K+ E+G+  I P++T  T         H  + R RT  +
Sbjct: 77  TRVTVALSLLKNPQRFEWFLEKATELGISTIIPMVTARTVVQPSNDRVHNKLKRWRTIVL 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
           SAA Q     LP +  P     +L    +D  C    A        S   LH      N+
Sbjct: 137 SAARQSKRYYLPQVVEPQRFSDVLNRSGYDERCMPFEAA------TSSPTLHCAGK--NI 188

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             LIG EGG+ +EE +   +    T +SLG  ILR++TAA+ A+A V++
Sbjct: 189 LFLIGGEGGFSAEEVQQAEATGCRT-MSLGTTILRAETAALFAVAYVRS 236


>gi|301169013|emb|CBW28610.1| predicted protein [Haemophilus influenzae 10810]
          Length = 245

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 45/259 (17%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++     +D
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120

Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             R            I+A EQC    +P I P   L+    +W            C   +
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA++AA++ +Q   GD
Sbjct: 224 RTETASLAAISALQICFGD 242


>gi|39995554|ref|NP_951505.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sulfurreducens
           PCA]
 gi|39982317|gb|AAR33778.1| conserved hypothetical protein TIGR00046 [Geobacter sulfurreducens
           PCA]
 gi|298504560|gb|ADI83283.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 260

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 17/230 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           GD + ++A  LR+K    ++L +GK+ E    I+ +G+     V    R Q +  D   +
Sbjct: 20  GDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRD-SLTVTISERRQIR-GDGDGL 77

Query: 86  FSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           +  +     K ++++ ++QKS E+G+  + P +   +      +     + R +     A
Sbjct: 78  WLTLCQGLPKGDKMELILQKSTELGVSEVVPFLAERSVPRISPEREQERLRRWQRVAEEA 137

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193
           A Q     +P +     L   ++  DH+ +++  ++      +L  + A A  P  +A++
Sbjct: 138 ARQAGCPAVPRVQLARGLTEAVRGTDHDLKLLLWEDE--RTTTLAGVLAAAQTPKRIAVV 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +GPEGG+ + E        FV P++LG RILR++TA +A +A++Q + GD
Sbjct: 196 VGPEGGFTAAEAAEAREAGFV-PVTLGRRILRTETAGIALVAILQYLYGD 244


>gi|332971497|gb|EGK10447.1| 16S rRNA methyltransferase RsmE [Kingella kingae ATCC 23330]
          Length = 240

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 17/221 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIK 90
            VLR+  GD+++LF+G+     + ++ +GK   +       Q  S++  S +  + +   
Sbjct: 26  QVLRLNVGDDLILFDGRGKRVHATLTELGKRKAACTLAPTEQINSESALS-IHLLQAISS 84

Query: 91  TNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
             R+D+ IQKSVE+G+ +I P      V+    +     + R +   ISA EQC    +P
Sbjct: 85  GERMDFTIQKSVELGVASITPIWSERCVVKLQGERADKRVQRWQDIAISACEQCGRDIVP 144

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSE 203
            + P    +  +K        +       S    + L A+   P  V ++IGPEGG+ + 
Sbjct: 145 EVRPIVRFDDYIKQMPREQLHLLM-----SLQQAKSLQAMQPAPQTVYLMIGPEGGWTAA 199

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E++      F   + LG R+LR++TA++AA+A +Q + GD+
Sbjct: 200 EEQAALDAGF-QAIVLGKRVLRTETASLAAIAAMQTLWGDF 239


>gi|224541750|ref|ZP_03682289.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525354|gb|EEF94459.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM
           15897]
          Length = 244

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 116/226 (51%), Gaps = 19/226 (8%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDV 82
           A    Y ++  V+RM++G++++  +      L +I  + + + + K E Q  ++    +V
Sbjct: 18  ADDSMYKHMTKVMRMEKGEHVICIDEDKHVCLCEIIDLKQGLLQIKEELQENNEL-DVEV 76

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTIS--AAE 136
             ++   K+++ +++IQK+ E+G+  I P+    +      T +N  + R   I+  A+E
Sbjct: 77  TLVYGLPKSDKFEFVIQKATELGVTRIVPLRASRSIVKMDETRFNKKKERFVRIAQEASE 136

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEKLHAIAHIPNVA 191
           QC    +P I PP  L  L         + + +E+   E+     +L+ LH      ++ 
Sbjct: 137 QCHRQIVPEITPPIQLSQLKDYLSEVNVVAYEEESKNGEHHAFTKALDALHT-----SIT 191

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I++GPEGG+  +E E +  +  V P S+G RILRS+TA +  ++++
Sbjct: 192 IIVGPEGGFDLQEVEKMQVMG-VVPCSIGNRILRSETAPLYMLSVI 236


>gi|86607114|ref|YP_475877.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp.
           JA-3-3Ab]
 gi|86555656|gb|ABD00614.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 272

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 18/234 (7%)

Query: 5   SHLKRLFVDFPLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           S L RL +D P      G  + +G Q HYL  V R+K GD  L+ +G    WL+     G
Sbjct: 11  SSLPRLAID-PAQRDAGGVLRLTGPQEHYLQRVRRLKPGDPFLVLDGSGKLWLAHWQPQG 69

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120
             +  +VE   R       +    + +K    D + ++  E+G   I P++T  T  +  
Sbjct: 70  SQVMGEVEALPRELPVY--LHLGLAVVKGPGFDEVFRQVTELGAARITPLLTERTVVEPG 127

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               +R +     AAEQC+ L  P + PPT       +W    +  +       EN    
Sbjct: 128 WGRRERWQKIVQEAAEQCERLRWPQVDPPTP----WTSWLAELKADWWGIAVARENAPLL 183

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             +L KL      P +A+ IGPEGG+   E+    +   V P+SLG  ILRS T
Sbjct: 184 LQALPKLRLSERDPVLAVAIGPEGGWTEAERRQAEAHGGV-PVSLGTTILRSTT 236


>gi|123443620|ref|YP_001007592.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090581|emb|CAL13450.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 243

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 117/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   ++   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANSELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 62  LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I     L       D + ++        S
Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAAQDDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|188534950|ref|YP_001908747.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99]
 gi|188029992|emb|CAO97876.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99]
          Length = 243

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL    +   S +  +++  VLRM  G  + LF+G D  + ++I+   K  
Sbjct: 2   RIPRIYHPAPLDAGNEIALSEEAANHVGRVLRMGPGQRLELFDGTDLTFAAEITQADKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                + +R  +++S +      +  +  ++++ IQK+VE+G+  I P+   +++     
Sbjct: 62  VHVRIHTARDDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P +    TLE      D   ++        S
Sbjct: 119 LDAERLAKKIQQWQKIAIAACEQCGRNRIPEVRQAMTLEAWCAEQDRGLKLNLHPRADHS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----LPVERVRLLIGPEGGLSADEISMTARYGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|16272258|ref|NP_438470.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae Rd
           KW20]
 gi|260581228|ref|ZP_05849047.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae RdAW]
 gi|1176097|sp|P44627|RSME_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|1573272|gb|AAC21968.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092153|gb|EEW76097.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae RdAW]
          Length = 245

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   K  LH  AH        IP   V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA++ +Q   GD
Sbjct: 221 RVLRTETASLAAISALQICFGD 242


>gi|228999104|ref|ZP_04158686.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17]
 gi|228760721|gb|EEM09685.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17]
          Length = 249

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+         +  GD  H++A V+RM  GD+I    NGK     +++I+  +V 
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAMCTIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  SAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174
            +     ++R++     AAEQ     +P ++ P + + LL  + D++ C + + +E    
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQG 177

Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E  N  + L A+     + ++ GPEGG   EE   L    F+ P SLGPRILR++TA + 
Sbjct: 178 EKANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|281179955|dbj|BAI56285.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 243

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQVLQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPVMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|253698878|ref|YP_003020067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sp. M21]
 gi|251773728|gb|ACT16309.1| protein of unknown function DUF558 [Geobacter sp. M21]
          Length = 246

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 19/232 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSD 81
           +G+ Y ++A VLR+KEG  + L           +  VG    ++R        ++     
Sbjct: 19  TGELYRHMARVLRIKEGSEVELIENGGARHRGTVEEVGAKKLTVRISASVAPSAEEPGLR 78

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135
           +  +    K  +LD ++QK  E+G+       A R V+  +   +   + R       AA
Sbjct: 79  ITLLQGMPKGEKLDLILQKCTELGVAEVVVFDAARSVVKLHGDRSAARLSRYEKIVQEAA 138

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH----AIAHIPNVA 191
            Q    + P +    TL  +L +  H  +++  +   G E +   LH    A+    +VA
Sbjct: 139 RQSGRHSSPKVALGGTLAEVLADSSHEVKLLLYE---GEEKT--TLHDCFGAVVAPKSVA 193

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +++GPEGG   EE     +  F TP++LG RILR++TA +A ++++Q   GD
Sbjct: 194 VVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSILQFHWGD 244


>gi|300690423|ref|YP_003751418.1| ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia
           solanacearum PSI07]
 gi|299077483|emb|CBJ50108.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
           [Ralstonia solanacearum PSI07]
          Length = 249

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R  +D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +  R
Sbjct: 3   LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGREFRARLDAINR--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116
                 + +    ++ +Y  +  +     +++D++I+K+VE+G+ AI P      V+   
Sbjct: 60  DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQAERGVVRLS 119

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   +    +A EQC    +P + P  TL   L     + +        GS++
Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPAVSPVATLRDWLAAAKTSDRARVMLSPRGSQS 179

Query: 177 -------SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                  S E++ +      + +LIGPEGG  S ++E+L       PL+LG RILR+++A
Sbjct: 180 LTQWAAQSRERIDST----GIELLIGPEGGL-SPDEESLAEAAGYLPLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + AI G++
Sbjct: 235 ALVAISALHAILGEF 249


>gi|262372152|ref|ZP_06065431.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262312177|gb|EEY93262.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 239

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L      + +   +H+   VLR K  +  + FNGK GE+   ++ + K   
Sbjct: 1   MNRFYIETELNTGNTIELTESVFHHWVRVLRAKVQEKAIFFNGKGGEYRVTLTEINKKNA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYN 123
           F       +  + +  + I   +  K +R+DY IQK+ E+G+  I+ + + R      Y+
Sbjct: 61  FVSVDHFEAIDRTAPFKVILGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120

Query: 124 MDRVR-----TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            D+ +     +  ++A EQC +  +P +  P ++E  ++      + V A       N  
Sbjct: 121 RDQKKLDHWQSVAVAACEQCGMNIVPKVLAPISIEEWIQTDLPISRFVMA------PNKD 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +K   +   P +A+LIGPEGG    E    +   FV    +G R+LR++TA V A++++
Sbjct: 175 QKNVLLDAQPELALLIGPEGGLSESEIRLSNQHGFVN-WCIGDRVLRTETAPVVALSIL 232


>gi|299138336|ref|ZP_07031515.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8]
 gi|298599582|gb|EFI55741.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8]
          Length = 235

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 18/230 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL--SKISYVGKSIRFKVEYQSRSQT 77
           T    +GDQ  +LA VLR + G    +F+     +L  ++I+ V  S      ++     
Sbjct: 14  TTASLTGDQAAHLARVLRAEPGQ---IFDVVANGFLHRAEITSVSDSEVVFTLHEELEAD 70

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTI 132
               V  + +  K + +++ I+K+ E+G   I PV+ R T     Q     ++R R    
Sbjct: 71  AALPVHLLLAVFKFDHMEWGIEKATELGAERITPVLARRTEKHLSQAAAKRVERWRRIVR 130

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            AA+Q     +P +  P TL+  L++     +++ A+     EN++      A   +VA+
Sbjct: 131 EAAQQSRRSDVPTVDDPQTLKAALQSVSAETKLLLAE--TEQENTIAAALQQAS-QSVAL 187

Query: 193 LIGPEGGYHSEEKE--TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +GPEGG+  EE +  T H    VT   LGPRILR++TAA+A +A+  A+
Sbjct: 188 AVGPEGGWTPEEMQLFTEHGWKHVT---LGPRILRAETAAIAGLAICSAL 234


>gi|121534804|ref|ZP_01666624.1| protein of unknown function DUF558 [Thermosinus carboxydivorans
           Nor1]
 gi|121306599|gb|EAX47521.1| protein of unknown function DUF558 [Thermosinus carboxydivorans
           Nor1]
          Length = 244

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 21/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKS 64
           ++R F  FP  + ++   +GD  H++A VLR+K GD I++  G+DG+      IS  G S
Sbjct: 1   MRRFF--FPGPLASEMIITGDDGHHIARVLRLKPGDYIIV-AGQDGQACKAEIISVDGSS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           ++     Q+ +++ +  V+   +    K +++D++IQK+VE+G+  I P+ T YT     
Sbjct: 58  VKVACR-QALTESNEPPVEVWLAQGLPKGDKMDFIIQKAVELGVTRILPIETAYTVVRYD 116

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGS 174
                   +R +     AA+QC    +P +    T   LLK       I+       CG 
Sbjct: 117 AGKKAARRERWQKIAYEAAKQCGRAAVPEVASVQTFSSLLKMTLPETVIMLYEGQPACGL 176

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           + +L    + +++    +LIGPEGG+  +E   L        +++GPRILR++
Sbjct: 177 KQALRMTPSESYL----LLIGPEGGFSPDEV-LLCRQRGAQIVTMGPRILRTE 224


>gi|218233104|ref|YP_002369120.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus B4264]
 gi|228960579|ref|ZP_04122227.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229051300|ref|ZP_04194818.1| RNA methyltransferase, RsmE [Bacillus cereus AH676]
 gi|229111784|ref|ZP_04241331.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15]
 gi|229148158|ref|ZP_04276464.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24]
 gi|296504805|ref|YP_003666505.1| surface protein [Bacillus thuringiensis BMB171]
 gi|218161061|gb|ACK61053.1| RNA methyltransferase, RsmE family [Bacillus cereus B4264]
 gi|228635298|gb|EEK91822.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24]
 gi|228671658|gb|EEL26955.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15]
 gi|228722058|gb|EEL73485.1| RNA methyltransferase, RsmE [Bacillus cereus AH676]
 gi|228799092|gb|EEM46061.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325857|gb|ADH08785.1| surface protein [Bacillus thuringiensis BMB171]
          Length = 249

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-ACLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|238021924|ref|ZP_04602350.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147]
 gi|237866538|gb|EEP67580.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147]
          Length = 239

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 31/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R ++  PL   T      +   ++ HVLR+  GDNI LFNG   ++ + +  +GK   
Sbjct: 1   MPRFYLPAPLAPHTTFSLPDNIVRHI-HVLRLNAGDNITLFNGTGSDFDATLQEIGKRHA 59

Query: 65  ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
              I  + + ++ S    + VQ + S     R+D+ +QKSVE+G+ AI+P+I+       
Sbjct: 60  ECHITAQRQPENESALNITLVQAVSS---GERMDFTLQKSVELGVRAIQPMISERCVVRL 116

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   + R +   I+A EQ     +P + P  +    L+       ++         
Sbjct: 117 SGDRADKRVQRWQDIVIAACEQSGRSIVPTVLPIVSFSDYLRQMPPELHLMM-------- 168

Query: 176 NSLEKLHAIAHIPNVA----ILIGPEGGYH-SEEKETLHSLPFVTPLSLGPRILRSDTAA 230
            SL +  A+  I  V+    ++IGPEGG+  +EE+  L +   V  ++LG R+LR++TAA
Sbjct: 169 -SLRRAQALRDIAPVSQSLRLMIGPEGGWTPAEEQAALDA--GVQTITLGKRVLRTETAA 225

Query: 231 VAAMALVQAICGDW 244
           +AAMA +Q + GD+
Sbjct: 226 MAAMAAMQVLWGDF 239


>gi|117923554|ref|YP_864171.1| hypothetical protein Mmc1_0238 [Magnetococcus sp. MC-1]
 gi|117607310|gb|ABK42765.1| 16S rRNA m(3)U-1498 methyltransferase [Magnetococcus sp. MC-1]
          Length = 248

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S   RL+   PLC         +   YL  VLR+ EGD + LFNG+ G W + I+     
Sbjct: 2   STTPRLYTPQPLCAGQPVTLDREAQRYLLKVLRLGEGDALYLFNGEGGAWSAHITQTSGP 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTH 121
           ++   +          ++  +    ++  ++ +IQK VE+G+  + P+ +  +       
Sbjct: 62  LQVTPQQFEPEPMAPLNLTLVQGLSRSGPMELVIQKGVELGLQQLIPLQSARSVARAKGE 121

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEK 180
           + ++R +   I AAEQC    L    P      L  +  +   +I+F ++      SL +
Sbjct: 122 HKLERWQRIAIEAAEQCRRSRLLQFQPVCDWSQLAGSLPEQGPRILFWEDHRHHTPSLRQ 181

Query: 181 LHA-IAHIP-NVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             A +   P  + +LIGPEGG  +EE      +L F T  SLGPR+LR++TAA+AA+  +
Sbjct: 182 WAATLEQAPTQITLLIGPEGGLSAEEVTHATTNLGFQT-CSLGPRVLRTETAALAAITAL 240

Query: 238 QAICGD 243
           QA+ GD
Sbjct: 241 QALLGD 246


>gi|153812691|ref|ZP_01965359.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174]
 gi|149831207|gb|EDM86296.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 115/221 (52%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++++VLRMK+G+ + + +G   E+   I ++    +   + Y      +     Y
Sbjct: 22  GTDVNHISNVLRMKQGEEVWISDGGQKEYRCAIEAFSADEVLLHIIYAQEPDYELPSRIY 81

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ +IQK+VE+G   I PV T+        +     ++R +    SAA+Q
Sbjct: 82  LFQGLPKADKMELIIQKAVELGAYEIIPVETKRCVVKLDGKKAAKKVERWQQIAESAAKQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
              + +P ++   + +  LK  +  + +++  +   G + + E L AI    ++ I IGP
Sbjct: 142 SKRMLIPNVHQVLSFKEALKYAESMDIRLIPYELAKGMQETKEILAAIEQGQSIGIFIGP 201

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  +E E   S     P++LG RILR++TA +A ++++
Sbjct: 202 EGGFEEKEVEAAIS-EGAKPITLGKRILRTETAGLAILSVL 241


>gi|269469135|gb|EEZ80680.1| hypothetical protein Sup05_0073 [uncultured SUP05 cluster
           bacterium]
          Length = 238

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 39/237 (16%)

Query: 27  DQY--HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           D+Y  H+L  VLR  +G NI LFNG DG     I+Y  K I  K + +    TK+ ++  
Sbjct: 21  DEYCSHHLIKVLRFPQGKNITLFNG-DG-----INYSAKVISSKKKCEVLILTKEQNLSE 74

Query: 84  ------YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----------TQNTHYNMDR 126
                       K  ++D++IQK+VE+G+  I P+++ +            +  H+    
Sbjct: 75  SKLNLTLAQGIAKGEKMDFLIQKAVELGVNKIVPIMSEHCVVKLKGEKLTKRQLHW---- 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +     A EQ     +P +  P TL   L     N  I+    T       + L  + H
Sbjct: 131 -QKIVFGACEQSGRSIVPNVETPITLNDFLDQTTTNGFILHHRST-------QTLLELEH 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +    ILIGPEGG   +E E   S  + + L LG R+LR++TA++ A+A +Q + G 
Sbjct: 183 MNEATILIGPEGGLSEKEIEQATSSGYQSLL-LGSRVLRTETASLVAIANMQLLWGS 238


>gi|209760098|gb|ACI78361.1| hypothetical protein ECs3822 [Escherichia coli]
          Length = 252

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  K+  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 71  VEVKL-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 129

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 130 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 189

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 190 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 243

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 244 LQVRFGD 250


>gi|206890400|ref|YP_002249400.1| hypothetical protein THEYE_A1605 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206890475|ref|YP_002249450.1| hypothetical protein THEYE_A1657 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742338|gb|ACI21395.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742413|gb|ACI21470.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 236

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 8/214 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S +   YL +VLR   GD + +FNGK   + +KI  + K+I    E +  ++   S +  
Sbjct: 22  SNEDRKYLFNVLRCHPGDTLSIFNGKGKSFHAKIIDL-KTIEILQEEELHTEDVFS-ITL 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTL 143
             + +K  ++D +IQK+ E+G+  I P ++      H   + R       A+EQ     +
Sbjct: 80  CQALLKGEKMDMIIQKATELGVKKIIPFVSDRCIVRHTRKIGRWEKIAKEASEQSHRSIV 139

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I        L+KN D+   I+F ++   +   ++ +  + H  N+ +LIGPEGG+  E
Sbjct: 140 PEISNVINFSELIKNIDNG--ILFWEK--ATSPLIQTISEVNHDKNIFLLIGPEGGFSQE 195

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E      +   T  SLG RIL+++TA++ ++ALV
Sbjct: 196 EVSQAEKMNIKTA-SLGKRILKAETASIVSVALV 228


>gi|320645839|gb|EFX14824.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H-
           str. 493-89]
 gi|320651139|gb|EFX19579.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H-
           str. H 2687]
          Length = 243

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  K+  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKL-LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|288933585|ref|YP_003437644.1| hypothetical protein Kvar_0702 [Klebsiella variicola At-22]
 gi|288888314|gb|ADC56632.1| protein of unknown function DUF558 [Klebsiella variicola At-22]
          Length = 243

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74
           L I +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK     VE  S  
Sbjct: 12  LTIGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70

Query: 75  SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126
              ++S +      +  +  ++++ IQKS+E+G+  I P+ +         +     + +
Sbjct: 71  PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +   I+A EQ     +P I P   LE      D   ++        S N+L        
Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINTLP-----LP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|157377104|ref|YP_001475704.1| hypothetical protein Ssed_3972 [Shewanella sediminis HAW-EB3]
 gi|157319478|gb|ABV38576.1| protein of unknown function DUF558 [Shewanella sediminis HAW-EB3]
          Length = 243

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 32/230 (13%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYI 85
           ++  VLRM  G+ + LFNG   E+L++I    K     +I   V  +S S       Q I
Sbjct: 27  HVGRVLRMSSGEQVSLFNGDGNEYLAQIESASKKNVQVTILSSVANESESPLHLHLGQVI 86

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCD 139
               + +R+D+ IQKSVE+G+  I P+ +         +     + + +   I A EQ  
Sbjct: 87  S---RGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGERLEKKIHQWQKIVIGACEQSG 143

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHI----PNVAIL 193
              +P + P  +LE     W        A++T   + +L     H I  +    P V +L
Sbjct: 144 RSLVPQVRPAMSLE----AWS-------AEQTDSLKLNLHPRAAHGIGGLTLPEPRVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG    E        F T + LGPR+LR++TAA+ A++ +Q   GD
Sbjct: 193 IGPEGGLSETEILMTEQHAF-TDVLLGPRVLRTETAALTAISALQLKFGD 241


>gi|229845005|ref|ZP_04465142.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae
           6P18H1]
 gi|229812139|gb|EEP47831.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae
           6P18H1]
          Length = 245

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 45/259 (17%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K    K
Sbjct: 5   RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK-SVK 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           VE   R    K+S ++     +  +  R+++ IQKSVE+G+  I P+   +++     +D
Sbjct: 64  VEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGVKLD 120

Query: 126 RVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             R            I+A EQC   ++P I P   L+    +W            C   +
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CAEND 164

Query: 177 SLEK--LHAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
              K  LH  AH        IP   V +LIG EGG  ++E        F T + LG R+L
Sbjct: 165 GALKLNLHPRAHYSIKTLPTIPAEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVL 223

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA+++A++ +Q   GD
Sbjct: 224 RTETASLSAISALQICFGD 242


>gi|152971897|ref|YP_001337006.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956746|gb|ABR78776.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 14/236 (5%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK            
Sbjct: 12  LIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKNVTAEVLSGEP 71

Query: 76  QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRV 127
             ++S +      +  +  ++++ IQKS+E+G+  I P+ +         +     + + 
Sbjct: 72  DDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQW 131

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I+A EQ     +P I P   LE      D   ++        S N+L        +
Sbjct: 132 QKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINTLP-----LPV 186

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 187 ERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|186681306|ref|YP_001864502.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc punctiforme PCC
           73102]
 gi|186463758|gb|ACC79559.1| protein of unknown function DUF558 [Nostoc punctiforme PCC 73102]
          Length = 249

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 29/256 (11%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S L+R+ +      + Q   + +Q HYL  VLR++EGD  +  +GK   WL++++  G+ 
Sbjct: 2   SQLQRIAIAPSQFQQGQILLTKEQQHYLGRVLRLREGDRFIAMDGKGKWWLAQLA--GEQ 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            +        ++   S    +  P K N  D +++   E+G+  I PV++  T    +  
Sbjct: 60  AQVLESLLVETELPVSITLMVALP-KGNGFDEVVRCCTELGVTCIAPVLSDRTLLDPSPQ 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPP----TTLEFLLKNWDHNCQIVFADE---TCGSE 175
            ++R R     AAEQ +   +P I  P    T L  ++ +      + FA+     C + 
Sbjct: 119 KLERWRRIAAEAAEQSERSFVPTILEPVAFNTGLSLVIGH------LSFANSQQYICEAR 172

Query: 176 NSLEKL-HAIAHI---------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                L H + H            + I  GPEGG+ ++E E   +  F  P+SLG RILR
Sbjct: 173 AEFPHLKHCLQHKGQMTSDKGQETIVIATGPEGGWTTQEIENAIASGF-QPVSLGRRILR 231

Query: 226 SDTAAVAAMALVQAIC 241
           + TA V A++L+ A C
Sbjct: 232 AVTAPVVALSLITASC 247


>gi|329998571|ref|ZP_08303168.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3]
 gi|328538642|gb|EGF64741.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3]
          Length = 243

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74
           L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK     VE  S  
Sbjct: 12  LIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70

Query: 75  SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126
              ++S +      +  +  ++++ IQKS+E+G+  I P+ +         +     + +
Sbjct: 71  PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +   I+A EQ     +P I P   LE      D   ++        S N+L        
Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINTLP-----LP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|291531082|emb|CBK96667.1| RNA methyltransferase, RsmE family [Eubacterium siraeum 70/3]
          Length = 257

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 18/225 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQY-IF 86
            ++A VLRM++GD  ++ +    ++L ++S      +I F +    +    + DV+  +F
Sbjct: 39  KHIAQVLRMRKGDKAIICDKNGHDYLCELSSAENKSAIEFGI-LDKKDNLAEPDVEITLF 97

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCD 139
             + K ++LD+++QK+ E+G   I P +++       T++    + R++     A++QC 
Sbjct: 98  QAVPKNDKLDFIVQKATELGAMRIVPFLSKRCVSRPDTKSADKKVQRLQRIAYEASKQCG 157

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              +P + P T  +  + + D +   I+F +  CG +  L +L        +A+ IG EG
Sbjct: 158 RGKIPGVMPFTDFKSAVNSIDSDTLPIIFYE--CGGKK-LSELDL--SYKKIAVFIGSEG 212

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE +   S    T + LG RILR +TA VAA+A++  + G+
Sbjct: 213 GFEKEEVDYALS-KGATAVHLGERILRCETAPVAALAVLMNLTGN 256


>gi|229086882|ref|ZP_04219041.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44]
 gi|228696392|gb|EEL49218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44]
          Length = 249

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+         +  GD  H++A V+RM  GD+I    NGK     + +I+  +V 
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAMCTIDEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  STI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174
            +     ++R++     AAEQ     +P ++ P + + LL  + D++ C + + +E    
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPDVHAPASFKQLLAMSSDYDVCLVAYEEEAKQG 177

Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E  N  + L  + H   + I+ GPEGG   +E   L    F+ P SLGPRILR++TA + 
Sbjct: 178 EKANFAKALTTLEHGQKLLIVFGPEGGLSEDEISALREYKFL-PCSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|262042596|ref|ZP_06015752.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040030|gb|EEW41145.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 243

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74
           L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK     VE  S  
Sbjct: 12  LIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70

Query: 75  SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126
              ++S +      +  +  ++++ IQKS+E+G+  I P+ +         +     + +
Sbjct: 71  PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +   I+A EQ     +P I P   LE      D   ++        S N+L        
Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLETWCAEQDSGLKLNLHPRASASINTLP-----LP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|238896476|ref|YP_002921214.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae NTUH-K2044]
 gi|238548796|dbj|BAH65147.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 268

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +IH H +RL V       +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  
Sbjct: 30  RIH-HPERLIVG------SQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEA 82

Query: 62  GKSIRFKVEYQS-RSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY-- 116
           GK     VE  S     ++S +      +  +  ++++ IQKS+E+G+  I P+ +    
Sbjct: 83  GKK-NVTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCG 141

Query: 117 ----TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                +     + + +   I+A EQ     +P I P   LE      D   ++       
Sbjct: 142 VKLDAERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRAS 201

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S N+L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ 
Sbjct: 202 ASINTLP-----LPVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALT 255

Query: 233 AMALVQAICGD 243
           A+  +Q   GD
Sbjct: 256 AITALQVRFGD 266


>gi|224005044|ref|XP_002296173.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209586205|gb|ACI64890.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 299

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 121/279 (43%), Gaps = 79/279 (28%)

Query: 38  MKEGDNILLFNGKDGEWLSKISY------------VGKSIRFKVEYQS---------RSQ 76
           + E D I +F+G++GEWL+++              +GK  + K E  S           Q
Sbjct: 18  LSEKDCIRVFDGRNGEWLARVRVSPQHQEDVNSIDMGKRTKRKREITSLMAECIVQLSLQ 77

Query: 77  TKQSDVQYI-FSPIKTN-RLDYMIQKSVEMGMGAIRPVITR----------------YTQ 118
           T Q D  ++ F P+K   R+  MI+K  E+G+G + PV++                 Y  
Sbjct: 78  TCQDDAPWVLFVPLKKQPRMKLMIEKCTELGVGRMIPVVSDRSAWMVSSNNDDLDVLYGG 137

Query: 119 NTHYN--MDRVRTYTISAAEQCDILTLPFIYPPTTL--------------EFLLKNWDHN 162
           N+      D++    I AAEQC+ L++P I    +L              E L++ W   
Sbjct: 138 NSDEENVFDKLELQAIEAAEQCERLSIPIITNEVSLGVQDDEANDRVWSVESLIEEWCRG 197

Query: 163 CQ--IVFADE----TC------GSENS-LEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            +   V AD+     C      G+E   L  + A+   P VA L+GPEGG+  EE+    
Sbjct: 198 WEERDVTADKRRLLVCRERGNDGTEGKVLPVIQALYDNPRVAFLVGPEGGWSPEEEAKFD 257

Query: 210 SLPF--------VTPLSLGPRILRSDTA---AVAAMALV 237
           S           V  +SLG  +LR++TA   AV A ALV
Sbjct: 258 STCTKYQGKDSPVQCISLGSSVLRAETACMMAVGAWALV 296


>gi|113869103|ref|YP_727592.1| 16S ribosomal RNA methyltransferase RsmE [Ralstonia eutropha H16]
 gi|113527879|emb|CAJ94224.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 250

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 47/239 (19%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT-- 91
            VLR+  GD + LF+G+ G   + +  +GK         + ++    D      P +   
Sbjct: 31  QVLRLVPGDAMTLFDGRGGSHAATLVELGK-------RHALARIGAHDAAEAEPPFRVTL 83

Query: 92  -------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
                  +++D++I+K+VE+G+ AI+P      V+    +  H      +    +A EQC
Sbjct: 84  AQGLAGGDKMDWLIEKAVELGVTAIQPLQASRSVVRLSGERAHKRHAHWQALVQAACEQC 143

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---------- 188
               LP + P    E     W        A    G    L    A   +P          
Sbjct: 144 GRNRLPEVAPVANFE----TW-------LAQSAAGGARLLVSPRATHSLPAFIAEQRESL 192

Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V +LIGPEGG   +E++    + F T +SLGPRILR++TA +A +A + A+ G +
Sbjct: 193 LAGGVTLLIGPEGGLAPDEEQAARQVGF-TGVSLGPRILRTETAGLACLATLNALLGGF 250


>gi|228910148|ref|ZP_04073967.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200]
 gi|228849431|gb|EEM94266.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPDQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|206978414|ref|ZP_03239283.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97]
 gi|206743370|gb|EDZ54808.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVETSSELSVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|312110171|ref|YP_003988487.1| hypothetical protein GY4MC1_1064 [Geobacillus sp. Y4.1MC1]
 gi|311215272|gb|ADP73876.1| protein of unknown function DUF558 [Geobacillus sp. Y4.1MC1]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 13/223 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
            GD YH++ HV+RM++G  ++         L +I  +  + +  +VE     QT+     
Sbjct: 19  QGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERVIVRVEEWINEQTELPVQI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K ++L+ +IQK  E+G        A R ++    +  +  ++R +     AAE
Sbjct: 79  YIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAKKANKKLERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAI 192
           Q     +P I+ P T++ L++        +FA E    + +   L AI     H  ++  
Sbjct: 139 QSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNHRTLAAILRQMKHGQSLLA 198

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + GPEGG+  EE E L    F +  SLGPRILR++TA +  +A
Sbjct: 199 VFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLLA 240


>gi|219871131|ref|YP_002475506.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus parasuis
           SH0165]
 gi|219691335|gb|ACL32558.1| conserved hypothetical protein [Haemophilus parasuis SH0165]
          Length = 244

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  K+    S D ++++  VLRM EG  ++LF+G +  + + I  V K  
Sbjct: 2   RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           I  K++  S+   ++S +      +  + +R+++ IQKSVE+G+  I P+   +++    
Sbjct: 62  ISVKIQ-NSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            ISA EQC    +P I P   L     +W            C 
Sbjct: 118 KLDGERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKL----TDW------------CQ 161

Query: 174 SENSLEKL-------HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
            ++ + KL       +++  +PN     V +LIG EGG  SEE     +  F T + LG 
Sbjct: 162 EQDGMLKLNLHPRAKYSLKSLPNIPKEGVRLLIGSEGGLSSEEIAMTEAENF-TEVLLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           RILR++TA++A +  +Q + GD
Sbjct: 221 RILRTETASLATITALQMLYGD 242


>gi|295399227|ref|ZP_06809209.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978693|gb|EFG54289.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 13/223 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
            GD YH++ HV+RM++G  ++         L +I  +  + +  +VE     QT+     
Sbjct: 19  QGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERVIVRVEEWINEQTELPIQI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K ++L+ +IQK  E+G        A R ++    +  +  ++R +     AAE
Sbjct: 79  YIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAKKANKKLERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAI 192
           Q     +P I+ P T++ L++        +FA E    + +   L AI     H  ++  
Sbjct: 139 QSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNHRTLAAILRQMKHGQSLLA 198

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + GPEGG+  EE E L    F +  SLGPRILR++TA +  +A
Sbjct: 199 VFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLLA 240


>gi|260221803|emb|CBA30730.1| Ribosomal RNA small subunit methyltransferase E [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 241

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 28/212 (13%)

Query: 34  HVLRMKEGDNILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--- 89
            VLR++ GD+I LF+G+   E+ + ++ +G+S    V+   R    +   + I   +   
Sbjct: 27  QVLRLQPGDSITLFDGQSADEFDATVTRMGRS-DVAVQVGQRRTVAREPARQIHLAVGMP 85

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
             +R+D++++K+ E+G+ +I+P++T  +      +     +   ++  ++A EQC    +
Sbjct: 86  ANDRMDWLVEKATELGVASIQPLMTERSVLKLSGERAEKKVAHWQSVAVAACEQCGGNMV 145

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA----IAHIPN----VAILIG 195
           P ++P  TL   LK+      I         +  L  L A    +A +P+    V  L G
Sbjct: 146 PVVHPMQTLAQWLKSPSAQSDI--------PQRLLLSLRAGSTPVASLPSGPAPVWFLSG 197

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           PEGG  S E+E   +  F +P SLGPR+LR++
Sbjct: 198 PEGGLSSHEEEAAIAARF-SPASLGPRVLRAE 228


>gi|206969964|ref|ZP_03230918.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134]
 gi|228954597|ref|ZP_04116621.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071816|ref|ZP_04205030.1| RNA methyltransferase, RsmE [Bacillus cereus F65185]
 gi|229081573|ref|ZP_04214070.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2]
 gi|229180588|ref|ZP_04307930.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W]
 gi|229192522|ref|ZP_04319484.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876]
 gi|206735652|gb|EDZ52820.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134]
 gi|228590946|gb|EEK48803.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876]
 gi|228603012|gb|EEK60491.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W]
 gi|228701729|gb|EEL54218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2]
 gi|228711295|gb|EEL63256.1| RNA methyltransferase, RsmE [Bacillus cereus F65185]
 gi|228805043|gb|EEM51638.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|315652517|ref|ZP_07905501.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485233|gb|EFU75631.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 245

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 115/224 (51%), Gaps = 19/224 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           SG   +++ +VLRMK G+ +L+    D ++L KI  +      +V  +     +Q ++  
Sbjct: 19  SGSDVNHIVNVLRMKIGEELLISVKGDWDYLCKIEEIEND---RVNLKLLESMEQRELPI 75

Query: 85  IFSPI----KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
             + +    K+++++ +IQK++E+G+  I PV T         + T   ++R      SA
Sbjct: 76  KLTLLQGIPKSDKIEMIIQKAIELGVSEIIPVKTNRVVVRIDKKKTQAKVNRWNAIAQSA 135

Query: 135 AEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A+Q     +P +  P TL+  L+   D+  +++  +   G + + + L+++    N+A+ 
Sbjct: 136 AKQSKRSIIPKVLNPQTLDNALEIVKDYGVKLLPYENADGIKKTKDILNSLNSKNNIAVF 195

Query: 194 IGPEGGYHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           IGPEGG+   E  K T      +T   LG RILR++TA +A ++
Sbjct: 196 IGPEGGFEEAEVKKSTDSGFEVIT---LGKRILRTETAGLALLS 236


>gi|228923064|ref|ZP_04086356.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836562|gb|EEM81911.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|260582598|ref|ZP_05850388.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae NT127]
 gi|260094409|gb|EEW78307.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae NT127]
          Length = 245

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+  +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDDSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S+++     +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC   ++P I P   L+    +W            C 
Sbjct: 118 KLDAERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQ----DW------------CA 161

Query: 174 SENSLEKL--HAIAH--------IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   KL  H  AH        IP+  V +LIG EGG  ++E        F T + LG 
Sbjct: 162 ENDGALKLNLHPRAHYSIKTLPSIPSEGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA+  +Q   GD
Sbjct: 221 RVLRTETASLAAITALQICFGD 242


>gi|253998192|ref|YP_003050255.1| hypothetical protein Msip34_0480 [Methylovorus sp. SIP3-4]
 gi|253984871|gb|ACT49728.1| protein of unknown function DUF558 [Methylovorus sp. SIP3-4]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 13/244 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F D PL   +         ++   VLR++ GD + LFNG   ++ ++I  + K+    
Sbjct: 5   RFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDTLRLFNGDGHDYSAEIETIRKNEVIV 64

Query: 69  VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124
              Q+ + + +S ++   +      +R+D+ IQKSVE+G+ AI+P+  + +  + +    
Sbjct: 65  KTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHAIQPISCQRSVVKLSGDRA 124

Query: 125 DRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           D+ R +     ISA EQ     LP +   T+L   L +       +  D    +   L+ 
Sbjct: 125 DKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQD 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L  I   P + +LIGPEGG  SEE     S  F T + LGPRILR++TAA+AA+A +   
Sbjct: 183 L-PIPQGP-ICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINTA 239

Query: 241 CGDW 244
            GD+
Sbjct: 240 WGDF 243


>gi|253997349|ref|YP_003049413.1| hypothetical protein Mmol_1984 [Methylotenera mobilis JLW8]
 gi|253984028|gb|ACT48886.1| protein of unknown function DUF558 [Methylotenera mobilis JLW8]
          Length = 244

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 22/249 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---- 64
           R +   PL +      S     +    LR+  GD+ +LFNG    +   ++ + K+    
Sbjct: 5   RFYTHSPLALGASVLLSESAAAHATRALRLSVGDDAILFNGDGVNYNCTLTEIKKNSVTA 64

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +       + S    + VQ I S    +R+D+ IQK+VE+G+ +I+P+ ++ +      
Sbjct: 65  MVNGATAVHNESPLNITLVQAISS---GDRMDFTIQKAVELGVKSIQPISSKRSVVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSE 175
           +      +  +   ISA EQ     +P +  P +LE  L N    +N +I+         
Sbjct: 122 ERAEKRTEHWQNIAISACEQSGRAYVPKVLTPISLEQWLGNNPAANNTRILLNPIGAVRL 181

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N + K         + +LIG EGG   EE +   +  F + + LGPRILR++TAA+ A+A
Sbjct: 182 NEIAKPTG-----EIQLLIGAEGGLSQEEIDLATAHNFQS-IVLGPRILRTETAALTAIA 235

Query: 236 LVQAICGDW 244
            +Q   GD+
Sbjct: 236 AMQLAWGDF 244


>gi|313669146|ref|YP_004049430.1| hypothetical protein NLA_18700 [Neisseria lactamica ST-640]
 gi|313006608|emb|CBN88073.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 241

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQS-DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R + E  ++  + T+   ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHAAQLTVLEKR-RAEAEILHEETADTESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
             R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+ 
Sbjct: 86  GERMDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVS 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRACKLSDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 199 EQEEQYAFDAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 240


>gi|206576729|ref|YP_002236603.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella
           pneumoniae 342]
 gi|290511348|ref|ZP_06550717.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp.
           1_1_55]
 gi|206565787|gb|ACI07563.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella
           pneumoniae 342]
 gi|289776341|gb|EFD84340.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp.
           1_1_55]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-R 74
           L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK     VE  S  
Sbjct: 12  LTVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKK-NVTVEVLSGE 70

Query: 75  SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126
              ++S +      +  +  ++++ IQKS+E+G+  I P+ +         +     + +
Sbjct: 71  PDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLQKKIQQ 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +   I+A EQ     +P I P   LE      D   ++        S N+L        
Sbjct: 131 WQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINTLP-----LP 185

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 186 VERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|238763255|ref|ZP_04624220.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           kristensenii ATCC 33638]
 gi|238698528|gb|EEP91280.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           kristensenii ATCC 33638]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   +++     
Sbjct: 62  LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPL---FSERCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC    +P I     L         + ++        S
Sbjct: 119 LDGERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLADWCAEQGDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----SSLSKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|33152802|ref|NP_874155.1| hypothetical protein HD1793 [Haemophilus ducreyi 35000HP]
 gi|33149026|gb|AAP96544.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 19/249 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            + R++   PL  +T    S D  +++  VLRM  G+ I+LF+G +  + + +  V  K 
Sbjct: 2   RIPRIYHPEPLKNQTSCSLSEDATNHIGRVLRMNVGEKIILFDGSNHIFHAVLETVQKKQ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRY 116
           I+ K+   S    ++S++      +  + +R+++ IQKSVE+G+  I P+      +   
Sbjct: 62  IQVKI-LHSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKIITPLWSERCGVKLN 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC+   +P I P   L    K  D   ++           
Sbjct: 121 DERQDKKLQQWQKIAIAACEQCERNQVPQIRPIMKLTDWCKEQDEMLKLNL------HPR 174

Query: 177 SLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +   +  +  IP   V +LIG EGG  +EE     +  F T + LG R+LR++TA++AA+
Sbjct: 175 AKYTIRQLPQIPTAGVRLLIGSEGGLSAEEIAMTENQGF-TEVLLGKRVLRTETASLAAI 233

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 234 TALQVCFGD 242


>gi|302391394|ref|YP_003827214.1| hypothetical protein Acear_0607 [Acetohalobium arabaticum DSM 5501]
 gi|302203471|gb|ADL12149.1| protein of unknown function DUF558 [Acetohalobium arabaticum DSM
           5501]
          Length = 248

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI---RF 67
           FV+     + Q + +GD   ++   LR+  GD I + +GK   ++ +I+  G  +     
Sbjct: 5   FVEPDYITEGQVRITGDDVKHITKSLRLGPGDEISVADGKGRRYMVEIAETGNGLVLGNI 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           K E++S+ +  + +V  +    K+ ++D +++K  E+G+  + P  T+ +          
Sbjct: 65  KEEFRSKVEP-EVEVTLLQGLPKSRKMDLIVEKCTELGIDKVIPAETKRSVVKLKPSKAK 123

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
               R +    +AA+Q     +P +     L  L +       I+   E   + +  E L
Sbjct: 124 RRRKRWQRKAEAAAKQSKRARIPAVGQLMNLTDLSEIATDYDLILLPWEEESTSSVKEVL 183

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            + A I  V I+IGPEGG+ +EE ET   L     +SLGPRILR++TA +  ++LV    
Sbjct: 184 GSAAAIEKVLIIIGPEGGFTAEEVETAKQLG-AKSVSLGPRILRTETAGLTTLSLVLYEL 242

Query: 242 GD 243
           GD
Sbjct: 243 GD 244


>gi|229593532|ref|YP_001455814.2| 16S ribosomal RNA methyltransferase RsmE [Citrobacter koseri ATCC
           BAA-895]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   P+   +Q     D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV   +    ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VDVKV-LSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +    + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|212637179|ref|YP_002313704.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella piezotolerans
           WP3]
 gi|212558663|gb|ACJ31117.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 261

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 38/233 (16%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++  VLRM  G+ + LFNG    +L++I S   K++  KV     S   +S +      +
Sbjct: 45  HVGRVLRMAAGEQVCLFNGDGNNYLAEILSASKKNVAVKV-LSCESNDSESPLHLHLGQV 103

Query: 90  --KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             + +R+D+ IQKSVE+G+  I P+ +         +     + + +   +SA EQ    
Sbjct: 104 ISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGERLEKKIQQWQKIVVSACEQSGRS 163

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAH-------IPN--V 190
            +P I P       L +W            C  E S  K  LH  A        +PN  V
Sbjct: 164 VVPVIRPA----MQLSDW------------CAEETSSLKINLHPRASHGVNGLCLPNNRV 207

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            ++IGPEGG  + E     +  F T + LGPR+LR++TAA+  +  +Q   GD
Sbjct: 208 RLVIGPEGGLSATEITMTETHKF-TDVLLGPRVLRTETAALTTITALQLKFGD 259


>gi|157085700|gb|ABV15378.1| hypothetical protein CKO_04321 [Citrobacter koseri ATCC BAA-895]
          Length = 254

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   P+   +Q     D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 13  RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 72

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV   +    ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 73  VDVKV-LSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 131

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +    + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 132 SERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASIN 191

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 192 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 245

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 246 LQVRFGD 252


>gi|240949405|ref|ZP_04753746.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305]
 gi|240296154|gb|EER46810.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 37/258 (14%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL  KT    S D  +++  VLRM  G+ I+LF+G +  + + +  V K  
Sbjct: 2   RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQIILFDGSNHVFHATLQAVEKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117
                  S    ++S +      +  + +R+++ IQKSVE+G+  I P+      +    
Sbjct: 62  IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKVITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P       L +W            C  ++ 
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMK----LTDW------------CKEQDD 165

Query: 178 LEKL-------HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           + KL       + I  +PN     V +LIG EGG   EE        F T + LG R+LR
Sbjct: 166 MLKLNLHPRAKYTIRQLPNMPVAGVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLR 224

Query: 226 SDTAAVAAMALVQAICGD 243
           ++TA++AA+  +Q   GD
Sbjct: 225 TETASLAAITALQVCFGD 242


>gi|238752316|ref|ZP_04613795.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei
           ATCC 43380]
 gi|238709477|gb|EEQ01716.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei
           ATCC 43380]
          Length = 232

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM EG ++ LF+G +  + ++I    K        + +    +S +  
Sbjct: 10  SDDAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIKADKKNLIVRLAEGQIADCESPLNL 69

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTIS 133
               +  +  ++++ +QKS+E+G+  I P+   +++     +D  R            I+
Sbjct: 70  HLGQVISRGEKMEFTVQKSIELGVNVITPL---FSERCGVKLDGERLAKKIQQWQKIAIA 126

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I     L       D + ++        S N+L      A +  V +L
Sbjct: 127 ACEQCGRNTIPEIRAAMQLTDWCAEQDDSLKLNLHPRASNSINTLP-----ASLNKVRLL 181

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 182 IGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITALQVRFGD 230


>gi|15640496|ref|NP_230123.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153823176|ref|ZP_01975843.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229509057|ref|ZP_04398545.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           B33]
 gi|229519725|ref|ZP_04409168.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC9]
 gi|229606238|ref|YP_002876886.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae MJ-1236]
 gi|254850701|ref|ZP_05240051.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744284|ref|ZP_05418237.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera
           CIRS 101]
 gi|9654895|gb|AAF93642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126519302|gb|EAZ76525.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229344414|gb|EEO09389.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC9]
 gi|229353982|gb|EEO18916.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           B33]
 gi|229368893|gb|ACQ59316.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           MJ-1236]
 gi|254846406|gb|EET24820.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738224|gb|EET93616.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera
           CIRS 101]
          Length = 243

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+A +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQVRFGD 241


>gi|261867348|ref|YP_003255270.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412680|gb|ACX82051.1| hypothetical protein D11S_0649 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 244

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T    S D  +++  VLRM+ GD + LF+G +  + + I+ V K  
Sbjct: 2   RVPRIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVAKK- 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             +V+  SR    ++S +      +  +  R+++ IQKSVE+G+  I P+   +++    
Sbjct: 61  SVEVDILSRQFDDRESPLAIHLGQVISRGERMEFTIQKSVELGVNVITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P I P   L+     W            C 
Sbjct: 118 KLDGERMDKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQ----QW------------CA 161

Query: 174 SENSLEKLH----------AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             N   KL+           +  IP   V +LIG EGG   +E        FV  L LG 
Sbjct: 162 EPNDALKLNLHPRARYSIRTLPEIPAAGVRLLIGSEGGLSPQEIAQTEQQGFVDVL-LGK 220

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TAA+AA+  +Q   GD
Sbjct: 221 RVLRTETAAMAAITALQVCFGD 242


>gi|324328215|gb|ADY23475.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 249

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIH 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN---CQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL +  H    C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLL-SMSHEYDVCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|295109582|emb|CBL23535.1| RNA methyltransferase, RsmE family [Ruminococcus obeum A2-162]
          Length = 247

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++++VLRMK+G+ + + +G   E+   I  +    +   + Y      +     Y
Sbjct: 22  GSDVNHISNVLRMKQGEELWISDGGKKEYRCTIEDFSSDEVLLHIIYAQEPDYELPSRIY 81

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ +IQK+VE+G   + PV T+        +     ++R +    SAA+Q
Sbjct: 82  LFQGLPKADKMELIIQKAVELGAYEVIPVETKRCVVKLDGKKAAKKVERWKQIAESAAKQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
              + +P ++   T +  LK  +  + +++  +   G + + E L  I    +V I IGP
Sbjct: 142 SKRMLIPNVHEVLTFKEALKYAEAMDIRLIPYELAKGMQETKEILADIQPGQSVGIFIGP 201

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  +E ET  S     P++LG RILR++TA +A ++++
Sbjct: 202 EGGFEEKEVETAIS-EGAKPITLGKRILRTETAGLAILSVL 241


>gi|217961801|ref|YP_002340371.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus AH187]
 gi|228987562|ref|ZP_04147680.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229141049|ref|ZP_04269591.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26]
 gi|217064535|gb|ACJ78785.1| RNA methyltransferase, RsmE family [Bacillus cereus AH187]
 gi|228642327|gb|EEK98616.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26]
 gi|228772160|gb|EEM20608.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 249

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|42783438|ref|NP_980685.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus ATCC
           10987]
 gi|42739367|gb|AAS43293.1| conserved hypothetical protein TIGR00046 [Bacillus cereus ATCC
           10987]
          Length = 249

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|293394489|ref|ZP_06638785.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582]
 gi|291422954|gb|EFE96187.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582]
          Length = 243

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 22/241 (9%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQS 73
           PL   T+   S D  +++  VLRM  G  + LF+G +  + ++I+ V K S++ ++    
Sbjct: 11  PLRSDTEIVLSEDAANHVGRVLRMSPGQLLQLFDGSNQVFDAEITRVDKKSVQVQIGA-G 69

Query: 74  RSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR--- 128
           R + ++S +      +  +  ++++ IQKS+E+G+  I P+   +++     +D  R   
Sbjct: 70  RQEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNTITPL---FSERCGVKLDGERLAK 126

Query: 129 ------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
                    I+A EQC    +  I P   LE      D + ++        S N+L    
Sbjct: 127 KLQQWQKIAIAACEQCGRNRIADIRPAMPLEAWCAEQDDSLKLNLHPRASHSINTLA--- 183

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               + +V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +Q   G
Sbjct: 184 --LPVNHVRLLIGPEGGLSADEIAMTSAHGF-TDILLGPRVLRTETTALTAITALQVRFG 240

Query: 243 D 243
           D
Sbjct: 241 D 241


>gi|167009794|ref|ZP_02274725.1| hypothetical protein Ftulh_03505 [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 212

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 14/213 (6%)

Query: 35  VLRMKEGDNILLFNGKDG-EWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPI-KT 91
           +LR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +  ++  I K+
Sbjct: 1   MLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYITNLYQAIIKS 60

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPF 145
              + +IQK+ ++G+  I P+IT +T +          ++R     I+ +EQC  + +P 
Sbjct: 61  ENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPK 120

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           I+ P  +   L+   ++  +V    T   ++ ++K+ +     N  I IGPEGG+  +E 
Sbjct: 121 IHTPIDIN-DLQMPQNDLNLVLCPYTQAKQDFVQKVKSST---NFNIFIGPEGGFSDKEM 176

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              HS  F T ++LG RIL+++TA +  ++++ 
Sbjct: 177 SKFHSNNFYT-INLGKRILKAETAPINILSIIN 208


>gi|229157925|ref|ZP_04285998.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342]
 gi|228625533|gb|EEK82287.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342]
          Length = 249

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|153828383|ref|ZP_01981050.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876092|gb|EDL74227.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 243

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 111/230 (48%), Gaps = 20/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK     +I  +VE    S    
Sbjct: 21  SEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQVLVNITERVENSIESPLDL 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTIS 133
              Q I    + +++++ IQKSVE+G+  I P+++         +     + + +   IS
Sbjct: 81  HLGQVIS---RGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRFEKKIQQWQKIAIS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC   T+P I P   LE          ++        S N+L        +  V +L
Sbjct: 138 ACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINTLP-----TPVSKVRLL 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG  +EE +      F   L LGPR+LR++TAA+ A+A +Q   GD
Sbjct: 193 IGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQVRFGD 241


>gi|167855789|ref|ZP_02478542.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755]
 gi|167853068|gb|EDS24329.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755]
          Length = 244

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 25/252 (9%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  K+    S D ++++  VLRM EG  ++LF+G +  + + I  V K  
Sbjct: 2   RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           I  K++  S+   ++S +      +  + +R+++ IQKSVE+G+  I P+   +++    
Sbjct: 62  ISVKIQ-NSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPL---WSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            ISA EQC    +P I P   L    K  D   ++        
Sbjct: 118 KLDGERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKLTDWCKEQDGMLKLNLHPRAKY 177

Query: 174 SENSLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           S      L ++ ++P   V +LIG EGG   EE     +  F T + LG RILR++TA++
Sbjct: 178 S------LKSLLNVPQEGVRLLIGSEGGLSPEEIAMTEAENF-TEVLLGKRILRTETASL 230

Query: 232 AAMALVQAICGD 243
           A + ++Q + GD
Sbjct: 231 ATITVLQMLYGD 242


>gi|328957459|ref|YP_004374845.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp.
           17-4]
 gi|328673783|gb|AEB29829.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp.
           17-4]
          Length = 253

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 15/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK-VEYQSRSQTKQSDV 82
           SGD +H++  V+RMK    + L       ++++I+ +  K ++   VE   R Q    +V
Sbjct: 21  SGDAFHHMVKVMRMKVDHRVYLVTKGQKAFIARINAIEEKEVQLNWVEDDLRQQELPIEV 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAE 136
                  K ++LD +IQK  E+G  A  P      IT++ T+     ++R++     AAE
Sbjct: 81  TIASGLPKGDKLDLIIQKGTELGASAFIPFAGSFSITKWDTKKAVKKIERLQKIAQEAAE 140

Query: 137 QCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSE--NSLEKLHAIAHIPNVA 191
           Q     +P I   ++++ L++   N+D  C + + +     E  N ++ L  +     + 
Sbjct: 141 QSHRTKIPTIESLSSVKQLVEMKGNFD-VCLVAYEESAKAGEDQNFVKGLKQVPVGGKLL 199

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           I+ GPEGG   EE +      F+ P +LGPRILR++TA + A+A
Sbjct: 200 IIFGPEGGLSKEEVDAFLQNGFL-PCALGPRILRTETAPLYALA 242


>gi|22127196|ref|NP_670619.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis KIM 10]
 gi|45443246|ref|NP_994785.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597516|ref|YP_071707.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806328|ref|YP_650244.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Antiqua]
 gi|108813291|ref|YP_649058.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Nepal516]
 gi|145597888|ref|YP_001161964.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Pestoides
           F]
 gi|149367057|ref|ZP_01889090.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125]
 gi|153949952|ref|YP_001399821.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418368|ref|YP_001607686.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Angola]
 gi|165924866|ref|ZP_02220698.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937327|ref|ZP_02225891.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010231|ref|ZP_02231129.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212766|ref|ZP_02238801.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399760|ref|ZP_02305278.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421908|ref|ZP_02313661.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426701|ref|ZP_02318454.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470902|ref|ZP_02335606.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           FV-1]
 gi|170023088|ref|YP_001719593.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis YPIII]
 gi|186896639|ref|YP_001873751.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928106|ref|YP_002345981.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis CO92]
 gi|229837626|ref|ZP_04457788.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A]
 gi|229840853|ref|ZP_04461012.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842587|ref|ZP_04462742.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229903754|ref|ZP_04518867.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516]
 gi|270487532|ref|ZP_06204606.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27]
 gi|294502903|ref|YP_003566965.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003]
 gi|21960262|gb|AAM86870.1|AE013933_7 hypothetical protein y3320 [Yersinia pestis KIM 10]
 gi|45438114|gb|AAS63662.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590798|emb|CAH22444.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108776939|gb|ABG19458.1| hypothetical protein YPN_3131 [Yersinia pestis Nepal516]
 gi|108778241|gb|ABG12299.1| hypothetical protein YPA_0331 [Yersinia pestis Antiqua]
 gi|115346717|emb|CAL19600.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209584|gb|ABP38991.1| hypothetical protein YPDSF_0581 [Yersinia pestis Pestoides F]
 gi|149290671|gb|EDM40747.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125]
 gi|152961447|gb|ABS48908.1| ribosomal small subunit methyltransferase RsmE [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351183|gb|ABX85131.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           Angola]
 gi|165914801|gb|EDR33414.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923066|gb|EDR40217.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990717|gb|EDR43018.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206058|gb|EDR50538.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960045|gb|EDR56066.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050468|gb|EDR61876.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054304|gb|EDR64123.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749622|gb|ACA67140.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis
           YPIII]
 gi|186699665|gb|ACC90294.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679524|gb|EEO75627.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516]
 gi|229690897|gb|EEO82951.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697219|gb|EEO87266.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229704314|gb|EEO91325.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A]
 gi|262360938|gb|ACY57659.1| hypothetical protein YPD4_0750 [Yersinia pestis D106004]
 gi|262364878|gb|ACY61435.1| hypothetical protein YPD8_0745 [Yersinia pestis D182038]
 gi|270336036|gb|EFA46813.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27]
 gi|294353362|gb|ADE63703.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003]
 gi|320013984|gb|ADV97555.1| hypothetical protein YPC_0866 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 243

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 20/249 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   + +  +++  VLRM EG ++ LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLQANTELALTDEAANHVGRVLRMTEGQSLQLFDGSNQIFDAEIIRADKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+   ++      
Sbjct: 62  LIVRLAEGQWEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPL---FSARCGVK 118

Query: 124 MDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +D  R            I+A EQC   T+P I     L       D + ++        S
Sbjct: 119 LDGERLTKKIQQWQKIAIAACEQCGRNTIPEIRDAMQLADWCAESDDSLKLNLHPRASNS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+
Sbjct: 179 INTLP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAI 232

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 233 TALQVRFGD 241


>gi|228993054|ref|ZP_04152977.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442]
 gi|228766702|gb|EEM15342.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442]
          Length = 249

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+         +  GD  H++  V+RM  GD+I    NGK     +++I+  +V 
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIVRVMRMSVGDHIYCCVNGKTAMCTIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  SAI---VEWGEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHN-CQIVFADETCGS 174
            +     ++R++     AAEQ     +P ++ P + + LL  + D++ C + + +E    
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQG 177

Query: 175 E--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E  N  + L A+     + ++ GPEGG   EE   L    F+ P SLGPRILR++TA + 
Sbjct: 178 EKANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|297517146|ref|ZP_06935532.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli OP50]
          Length = 236

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 16/242 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K S
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
           +  KV  + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  VEVKV-LEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++  +  + + +   I+A EQC    +P I P   LE      D   ++        S N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLP-----LPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQ 238
           +Q
Sbjct: 235 LQ 236


>gi|78186115|ref|YP_374158.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium luteolum DSM
           273]
 gi|78166017|gb|ABB23115.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 247

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 19/223 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           GD++H+L+ VLR KEG++I + +G        I+ VGK S+  ++  +S  +   + V  
Sbjct: 22  GDEFHHLSRVLRKKEGEHIRVTDGSGLSLEVLITSVGKRSLEGEILARSVVERPATGVTV 81

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
             S +K   R D+ ++K+ E+G+  + P++T+ T      +     M+R R   +SAA Q
Sbjct: 82  AISLLKAPARFDFFLEKATELGVSGVIPMMTQRTVSQPPRERFKGRMERWRNIMLSAARQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILIG 195
                LP ++ P +    L    ++ +++   E  G    L+        P   V  LIG
Sbjct: 142 SGRFHLPVLHEPLSFREALGLKGYDLRLI-PYEGSGVVPELD-------FPGKKVLFLIG 193

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            EGG+   E E      F   +S G  ILR+++A + A+ALV+
Sbjct: 194 GEGGFTPGEVEAASETGF-REMSFGRSILRAESAGIFAVALVR 235


>gi|313200262|ref|YP_004038920.1| hypothetical protein MPQ_0502 [Methylovorus sp. MP688]
 gi|312439578|gb|ADQ83684.1| conserved hypothetical protein [Methylovorus sp. MP688]
          Length = 243

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 13/244 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F D PL   +         ++   VLR++ GD + LFNG   ++ ++I  + K+    
Sbjct: 5   RFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDALRLFNGDGHDYSAEIETIRKNEVIV 64

Query: 69  VEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124
              Q+ + + +S ++   +      +R+D+ IQKSVE+G+  I+P+ ++ +  + +    
Sbjct: 65  KTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHTIQPISSQRSVVKLSGDRA 124

Query: 125 DRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           D+ R +     ISA EQ     LP +   T+L   L +       +  D    +   L+ 
Sbjct: 125 DKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQD 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L  +   P + +LIGPEGG  SEE     S  F T + LGPRILR++TAA+AA+A +  +
Sbjct: 183 L-PLPQGP-ICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINTV 239

Query: 241 CGDW 244
            GD+
Sbjct: 240 WGDF 243


>gi|119510272|ref|ZP_01629409.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414]
 gi|119465121|gb|EAW46021.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414]
          Length = 235

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 15/218 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYI 85
           +Q HYL  VLR++ GD  +  +GK   WL+++    +S + +V      +T+ S  +  +
Sbjct: 24  EQQHYLRRVLRLRTGDRFIAMDGKGKWWLTQL----ESEQAQVLETLTVETELSVAITLM 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTL 143
            +  K N  D +I+ S E+G+  I P+++  T    +   ++R R     AAEQ +   +
Sbjct: 80  VALPKGNGFDDIIRYSTELGVTCIAPLLSDRTLLNPSPQKLERWRRIATEAAEQSERAFV 139

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAILIGPEGGYH 201
           P I  P +    +     N         C        L+++    IP + I  GPEGG+ 
Sbjct: 140 PTILEPVSFMTAI-----NASQATHRYICEGRGDYPHLNSLVKTDIPEIIIATGPEGGWT 194

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             E E   +  F  P+SLG RILR+ TA V A+ L+ A
Sbjct: 195 EPEIENAIASGF-QPVSLGRRILRAVTAPVVALTLISA 231


>gi|313114748|ref|ZP_07800250.1| RNA methyltransferase, RsmE family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622973|gb|EFQ06426.1| RNA methyltransferase, RsmE family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 247

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 27/237 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DVQ 83
           G   H+LA V+R + GD ++L +G   E+ + I+  G + + F+VE    S  + S +V 
Sbjct: 19  GADAHHLARVMRARLGDTVILCDGNAVEYTATITGFGDECVEFRVEPGYPSAAEPSVEVT 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139
            +    K ++L+ +I+  VE+G   I P  +RY     +      +R     + AA+QC 
Sbjct: 79  LLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKKEEQKNERYNRIAVEAAKQCG 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN--- 189
              LP +  P      L N+   C+       ++F  E  G+   L  L A A   +   
Sbjct: 139 RGVLPDVALP------LANFGAVCRTFAQYDLVLFCYECGGA--PLRDLLAAAKPADDEK 190

Query: 190 --VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             +AI+ G EGG+ +EE E        T + LGPRILR +TA +A +A V  + G+ 
Sbjct: 191 LKIAIVTGAEGGFAAEEAEMAAKAGART-VGLGPRILRCETAPLAVLASVMTLTGNL 246


>gi|296313945|ref|ZP_06863886.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC
           43768]
 gi|296839486|gb|EFH23424.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC
           43768]
          Length = 241

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 21/223 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIFSPIK 90
           +VLR++  +NI LF+GK     ++++ + K  R K E      T      ++  I S   
Sbjct: 27  NVLRVRPNENITLFDGKGKAHTAQLTVLEKR-RAKAEILHEDTTDNESPLNITLIQSISS 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
            +R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P
Sbjct: 86  GDRMDFTLQKSVELGITAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVP 145

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYH 201
            + P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+ 
Sbjct: 146 PVLPIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWT 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +E++      F   ++LG RILR++TAA+AA+A +Q + GD+
Sbjct: 199 EQEEQQAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 240


>gi|297736409|emb|CBI25132.3| unnamed protein product [Vitis vinifera]
          Length = 410

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 8/218 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSD 81
           +  GD++ ++  VLR+   D + LFNGK G     I+ + ++ + F      +    QS 
Sbjct: 182 RVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSS 241

Query: 82  VQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
             ++F+    +K  R D++++K  E+G  ++ P++T  + +   N +DR++   ++AA+Q
Sbjct: 242 RWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQ 301

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    + PPTT++ LL     +   + A     +      L +        ++IGPE
Sbjct: 302 CQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPE 359

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           G +  +E   +      T + LGP  LR +TA +A +A
Sbjct: 360 GDFTEKELNMMRE-AGATAVGLGPHRLRVETATIALLA 396


>gi|226328796|ref|ZP_03804314.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198]
 gi|225201982|gb|EEG84336.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198]
          Length = 243

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 40/259 (15%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   TQ     +  +++  VLRM  G  + LF+G +  + ++I       
Sbjct: 2   RIPRIYHPEPLTAGTQTVLGEEASNHVGRVLRMSSGQKLALFDGSNQVFDAEI------- 54

Query: 66  RFKVEYQSRSQTKQSDVQYI---FSPI---------KTNRLDYMIQKSVEMGMGAIRPVI 113
              +E   +S T Q +V  +    SP+         +  ++++ IQKSVE+G+  I P+I
Sbjct: 55  ---IESTKKSVTVQVNVGIVDDKESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLI 111

Query: 114 TRYT---------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ 164
           +            +  H    ++    ISA EQC   ++P + P  +LE      D + +
Sbjct: 112 SERCGVKLDPSRLEKKHQQWQKI---IISACEQCGRNSIPQLMPVMSLEEWCAQDDGSLK 168

Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
           +          N+L        +  V +LIGPEGG   EE        F T + LGPR+L
Sbjct: 169 LNLHPRANQRINTLP-----LPVKKVRLLIGPEGGLSPEEIAMTAEHNF-TDILLGPRVL 222

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++T A+ A+  +Q   GD
Sbjct: 223 RTETTALTAITALQVRFGD 241


>gi|167750969|ref|ZP_02423096.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702]
 gi|167656148|gb|EDS00278.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702]
          Length = 257

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 117/225 (52%), Gaps = 18/225 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQY-IF 86
            ++A VLRM++GD  ++ +    ++L ++S +    +I F +    +    + DV+  +F
Sbjct: 39  KHIAQVLRMRKGDKAIICDKNGHDYLCELSSLENKNAIEFGI-LDKKDNLAEPDVEITLF 97

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCD 139
             + K ++LD+++QK+ E+G   I P +++        ++    + R++     A++QC 
Sbjct: 98  QAVPKNDKLDFIVQKATELGAVRIVPFLSKRCVSRPDAKSADKKVQRLQRIAYEASKQCG 157

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              +P + P T  +  + + D +   I+F +  CG +  L +L        +A+ IG EG
Sbjct: 158 RGKIPGVMPFTDFKSAVNSIDSDTLPIIFYE--CGGKK-LSELDL--SYKKIAVFIGSEG 212

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE +   S    T + LG RILR +TA VAA+A++  + G+
Sbjct: 213 GFEKEEVDYALS-KGATAVHLGERILRCETAPVAALAVLMNLTGN 256


>gi|225429203|ref|XP_002271957.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 287

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 8/218 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSD 81
           +  GD++ ++  VLR+   D + LFNGK G     I+ + ++ + F      +    QS 
Sbjct: 59  RVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSS 118

Query: 82  VQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
             ++F+    +K  R D++++K  E+G  ++ P++T  + +   N +DR++   ++AA+Q
Sbjct: 119 RWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQ 178

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    + PPTT++ LL     +   + A     +      L +        ++IGPE
Sbjct: 179 CQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPE 236

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           G +  +E   +      T + LGP  LR +TA +A +A
Sbjct: 237 GDFTEKELNMMRE-AGATAVGLGPHRLRVETATIALLA 273


>gi|291557449|emb|CBL34566.1| RNA methyltransferase, RsmE family [Eubacterium siraeum V10Sc8a]
          Length = 257

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 117/224 (52%), Gaps = 18/224 (8%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIRFKVEYQSRSQTKQSDVQY-IFS 87
           ++A VLRM++GD  ++ +    ++L ++S      S+ F +    +  + + D++  ++ 
Sbjct: 40  HIAQVLRMRKGDKAIICDKNGHDYLCELSSADNKNSVEFAI-LDKKDNSAEPDIEITLYQ 98

Query: 88  PI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDI 140
            I K ++LD+++QK+ E+G   I P +++        ++    + R++     A++QC  
Sbjct: 99  AIPKNDKLDFIVQKATELGAVRIVPFMSKRCVSRPDAKSADKKVQRLQRIAYEASKQCGR 158

Query: 141 LTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
             +P + P T  +  + + D +   I+F +  CG +  L +L        +A+ IG EGG
Sbjct: 159 GKIPGVMPFTDFKSAVNSIDSDTLPIIFYE--CGGKK-LSELDL--SYKKIAVFIGSEGG 213

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  EE +   S    T + LG RILR +TA VAA+A++  + G+
Sbjct: 214 FEKEEVDYALS-KGATAVHLGERILRCETAPVAALAVLMNLTGN 256


>gi|312135345|ref|YP_004002683.1| hypothetical protein Calow_1326 [Caldicellulosiruptor owensensis
           OL]
 gi|311775396|gb|ADQ04883.1| protein of unknown function DUF558 [Caldicellulosiruptor owensensis
           OL]
          Length = 243

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  +++  VLR +EGD I L +G + ++ S+I  V K  + K+  +S++   +   + IF
Sbjct: 22  EDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKD-KIKLLIESKTLNDRESTKNIF 79

Query: 87  ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138
                IK  ++D+++QK+ E+G+  I PV+++      ++     +DR R     A +QC
Sbjct: 80  LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISEKEEKKLDRWRKIAQEAQKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P I  P  +  + + +     I+F      SE S   L +  +  N+ ILIGPEG
Sbjct: 140 LRPIPPLIEVPIRISEIKEKYLDKLDILFIPYEKESETSRWSLPS--NYNNIGILIGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE E L +   V  +SLG RILRS+TA++AA++++    G+
Sbjct: 198 GFEEEEVEELKTFKNVQVISLGKRILRSETASIAALSILMHELGE 242


>gi|209521966|ref|ZP_03270631.1| protein of unknown function DUF558 [Burkholderia sp. H160]
 gi|209497600|gb|EDZ97790.1| protein of unknown function DUF558 [Burkholderia sp. H160]
          Length = 232

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 45/237 (18%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDVQYIFSPIKTN 92
           VLR++ GD+++LFNG+ GE+ +++  V + S R K+ ++++        +         +
Sbjct: 14  VLRLQPGDSLVLFNGQGGEYGAELVEVERRSARVKIRDFRAVEVEPPYRLTLAQGIAGGD 73

Query: 93  RLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           ++D++I+K+VE+G      +  +R V+    +         +    ++ EQC    LP +
Sbjct: 74  KMDWLIEKAVELGASGFVPLATVRSVVRLTGERAQRRQQHWQGVVRASCEQCGRNRLPEV 133

Query: 147 YP----------------PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-- 188
            P                P  L  LL        I FA              A+   P  
Sbjct: 134 MPVQDFGAWLDTLSREPAPDELRLLLS---PRASISFA--------------ALPDAPPR 176

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             V +LIGPEGG  ++E+    +  F T L LGPR+LR++TA +A +A + A  G W
Sbjct: 177 GRVTLLIGPEGGLSADEEAAAVAQGF-TALGLGPRVLRTETAGIAVLAALSARWGGW 232


>gi|254467996|ref|ZP_05081402.1| conserved hypothetical protein TIGR00046 [beta proteobacterium
           KB13]
 gi|207086806|gb|EDZ64089.1| conserved hypothetical protein TIGR00046 [beta proteobacterium
           KB13]
          Length = 247

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 115/229 (50%), Gaps = 11/229 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DV 82
           S D   +L   LR+K  D I+LFNG   ++  ++S +  K+++  V  +  + ++   D+
Sbjct: 20  SEDASKHLVKSLRLKPSDKIILFNGDGFDYHGEVSDIDKKNVKIAVNEKKHNASEAVIDI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136
             + S    ++LD++ QK+ E+G+     + T               ++ ++   ISA E
Sbjct: 80  SILQSVTSRDKLDFIFQKNTELGIKNFYLINTERVNFKIPQSKIENRIEHLKKVVISACE 139

Query: 137 QCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P ++     L  L    DH+C+++    T  S ++L   + + +  +  ILIG
Sbjct: 140 QSGRSKIPTVHETILGLNKLTNEDDHSCKLILNPYTDYSLSNLRN-NDLINKKSFQILIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           PEGG+   E +   +  F + LSLG R+LR++TA+++  + + A+  ++
Sbjct: 199 PEGGFSEAEIKVAENAGFKS-LSLGKRVLRTETASLSIASAILALTNNF 246


>gi|251793469|ref|YP_003008198.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534865|gb|ACS98111.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
          Length = 244

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 19/230 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80
           S D  +++  VLRM  G+++ LF+G +  + + I+ VGK S+  ++   ++  R      
Sbjct: 21  SEDGANHVGRVLRMLPGEHLELFDGTNHIYQAVITQVGKKSVDVEILSQQFDDRESPLSI 80

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTIS 133
            +  + S  +  R+++ IQKSVE+G+  I P+ +        + DR+       +   I+
Sbjct: 81  HLGQVIS--RGERMEFTIQKSVELGVNVITPLWSERC-GVKLDSDRMEKKIQQWQKIAIA 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQC    +P I P   L+      D   ++        S  +L  + A      V +L
Sbjct: 138 ACEQCGRNKIPEIRPLMKLQQWCAEQDDTLKLNLHPRATHSIRTLPAIPA----AGVRLL 193

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IG EGG   +E        FV  L LG R+LR++TAA+AA+  +Q   GD
Sbjct: 194 IGSEGGLSPQEIAQTEQQGFVEVL-LGKRVLRTETAAMAAITALQVCFGD 242


>gi|229198439|ref|ZP_04325143.1| RNA methyltransferase, RsmE [Bacillus cereus m1293]
 gi|228584942|gb|EEK43056.1| RNA methyltransferase, RsmE [Bacillus cereus m1293]
          Length = 249

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIH 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|254422571|ref|ZP_05036289.1| conserved hypothetical protein TIGR00046, putative [Synechococcus
           sp. PCC 7335]
 gi|196190060|gb|EDX85024.1| conserved hypothetical protein TIGR00046, putative [Synechococcus
           sp. PCC 7335]
          Length = 247

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 35/236 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           + +Q HYL  VLR+  GD  +  +G+  +WL  +S        +V+  S  Q   +D+  
Sbjct: 20  TSEQIHYLRRVLRLNSGDRFIAQDGRGKQWLVMLSD-------QVDQASIEQVISADLSA 72

Query: 85  I---FSPI-------KTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTI 132
           +     P+       K N  D +++++ E+G+  I P+++  T    +   + R      
Sbjct: 73  VGPATGPLRLAAALPKGNSFDQVVRQATELGVTHIYPLMSDRTLLNPSASRLTRWHRIAQ 132

Query: 133 SAAEQCDILTLPFIYPPTTL-EFLLK-NWDHNCQIVFADETCGS-ENSLEKLHAIAH--- 186
            A+EQC+  T P I+ PTTL +F+++ NW     I      C + +NS   L  I H   
Sbjct: 133 EASEQCERATTPEIFSPTTLQQFVIESNWSGIRYI------CATRQNSPHLLSKIQHDLV 186

Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                +V +L+GPEGG+   E  T+ +      +SLG  ILR+ TA+V A++LV A
Sbjct: 187 SVGSHDVTLLVGPEGGWTPGEI-TVATDSGYEIVSLGTAILRAVTASVTALSLVGA 241


>gi|223042063|ref|ZP_03612239.1| hypothetical protein AM202_0654 [Actinobacillus minor 202]
 gi|223017138|gb|EEF15574.1| hypothetical protein AM202_0654 [Actinobacillus minor 202]
          Length = 243

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 37/258 (14%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL  KT    S D  +++  VLRM  G+ I LF+G +  + + +  V K  
Sbjct: 2   RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQITLFDGSNHVFHATLQAVEKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV------ITRYT 117
                  S    ++S +      +  + +R+++ IQKSVE+G+  I P+      +    
Sbjct: 62  IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P       L +W            C  ++ 
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPI----MKLTDW------------CKEQDD 165

Query: 178 LEKL-------HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           + KL       + I  +PN     V +LIG EGG   EE        F T + LG R+LR
Sbjct: 166 MLKLNLHPRAKYTIRQLPNMPAAGVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLR 224

Query: 226 SDTAAVAAMALVQAICGD 243
           ++TA++AA+  +Q   GD
Sbjct: 225 TETASLAAITALQVCFGD 242


>gi|229163256|ref|ZP_04291211.1| RNA methyltransferase, RsmE [Bacillus cereus R309803]
 gi|228620319|gb|EEK77190.1| RNA methyltransferase, RsmE [Bacillus cereus R309803]
          Length = 249

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGS 174
            +     ++R++     AAEQ     +P ++ P + + LL   N    C + + +E    
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSNEYDVCLVAYEEEAKQG 177

Query: 175 ENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + 
Sbjct: 178 EKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEIAMLREHKFV-PCSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|307153004|ref|YP_003888388.1| hypothetical protein Cyan7822_3159 [Cyanothece sp. PCC 7822]
 gi|306983232|gb|ADN15113.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7822]
          Length = 239

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           DQ HYL  VLR+K+GD +++ NG+   W  K    G S +  +E  + S     ++  + 
Sbjct: 21  DQQHYLKRVLRLKDGDPLIIMNGQGKAW--KAILQGTSAQL-LETLTESTELALNLSLLI 77

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
           +  K +  + +++   E+G+    PVI+  T    +   ++R R   + AAEQ +   +P
Sbjct: 78  ALPKGSGFEEIVRGCTELGVTTFIPVISERTLLNPSAQKIERWRKIALEAAEQSERQIVP 137

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNV---AILIGPEGGY 200
            I  P      L       + V  D+  C +    + L +    P +    I  GPEGG+
Sbjct: 138 QILEPIKFSIALT----KVKEVKTDKYICVTRRETDHLFSYLTKPLLNPQIIATGPEGGW 193

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            + E +   S  F  P+SLGPRILR+ TA V   +LV A+ 
Sbjct: 194 TTGEIDLAISAGF-QPVSLGPRILRAITAPVYVASLVSAMV 233


>gi|326559952|gb|EGE10350.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 46P47B1]
 gi|326565441|gb|EGE15613.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 103P14B1]
 gi|326572795|gb|EGE22781.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis BC7]
 gi|326573982|gb|EGE23931.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis CO72]
 gi|326577050|gb|EGE26945.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 101P30B1]
          Length = 246

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 30/242 (12%)

Query: 7   LKRLFVDFPLCIKTQGK--ASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL     G+  A  D   H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           KS   K++     +R+   ++ +  + S  + +R+DY IQK+ EMG+  I  + +   Q 
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117

Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            H   DR        ++  ++A EQC +  +P          LL  W  NCQ        
Sbjct: 118 AHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173

Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            SEN  +  KL     +P N+++LIG EGG    E +      FV P  +G R+LR++TA
Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227

Query: 230 AV 231
            V
Sbjct: 228 PV 229


>gi|17547482|ref|NP_520884.1| hypothetical protein RSc2763 [Ralstonia solanacearum GMI1000]
 gi|17429785|emb|CAD16470.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 249

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 123/255 (48%), Gaps = 25/255 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R  +D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +  R
Sbjct: 3   LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGQEFRARLDAINR--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRPVITR---YTQN 119
                 + +    ++ +Y  +  +     +++D++I+K+VE+G+ AI P+ T       +
Sbjct: 60  DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLS 119

Query: 120 THYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175
               + RV+ +     +A EQC    +P + P   L   L     + +        GSE 
Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPAVSPVAPLRDWLAAAKASARARVMLSPRGSEP 179

Query: 176 ------NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                  S E++ +      + +LIGPEGG  S ++E L       PL+LG RILR+++A
Sbjct: 180 LTQWAVQSRERIGSA----GIELLIGPEGGL-SPDEEALAEAAGYLPLTLGRRILRTESA 234

Query: 230 AVAAMALVQAICGDW 244
           A+ A++ + A+ G++
Sbjct: 235 ALVAVSALHAVLGEF 249


>gi|157960429|ref|YP_001500463.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella pealeana ATCC
           700345]
 gi|157845429|gb|ABV85928.1| protein of unknown function DUF558 [Shewanella pealeana ATCC
           700345]
          Length = 243

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 38/233 (16%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++  VLRM  G+ + LFNG   ++L++I S   K++  KV     +   +S +      +
Sbjct: 27  HVGRVLRMSSGEQVSLFNGDGNDYLAEIISASKKNVEVKV-LSCEANDSESPLNLHLGQV 85

Query: 90  --KTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTHYNMDRV----RTYTISAAEQCDIL 141
             + +R+D+ IQKSVE+G+  I P+ +     + T   +D+     +   ISA EQ    
Sbjct: 86  ISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLTGERLDKKIQQWQKIVISACEQSGRS 145

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHI--PN--V 190
            +P I P       L +W            C  ++   KL       H +  +  PN  V
Sbjct: 146 VVPVIRPA----MQLSDW------------CAEDSDAVKLNLHPRASHGVNGLTLPNNRV 189

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            ++IGPEGG  + E        F T + LGPR+LR++TAA+  ++ +Q   GD
Sbjct: 190 RLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISALQLKFGD 241


>gi|325287492|ref|YP_004263282.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
           lytica DSM 7489]
 gi|324322946|gb|ADY30411.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
           lytica DSM 7489]
          Length = 235

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 8/217 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++  VLR  EGD + + NG    + +KI     K  + ++  + +       +   
Sbjct: 21  EESKHIVKVLRKVEGDELYITNGNGYLFTAKIMVADVKKCKAQITSKEKKHRPMHWLHIA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P+I  +++     ++R+     SA +Q     LP
Sbjct: 81  VAPTKMNDRFEWFLEKATEIGVDEITPIICDHSERKVLKLERMEKVLQSAMKQSLQTYLP 140

Query: 145 FIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
            +  P    EF+ K  +H   +  A   C  E  +E    +A   +V ILIGPEG + S 
Sbjct: 141 KLNAPIPYAEFVQK--EHKDLLFIAH--CEEEEKVELKRRVAADKDVTILIGPEGDFSSA 196

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E +  +   F+ P+SLG   LR++TAA+ A A V  I
Sbjct: 197 EIKQAYVNGFI-PVSLGKNRLRTETAAIVACATVAMI 232


>gi|167920517|ref|ZP_02507608.1| hypothetical protein BpseBC_18364 [Burkholderia pseudomallei
           BCC215]
          Length = 249

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 22/240 (9%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 75  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 133

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 193

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 194 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 249


>gi|167825846|ref|ZP_02457317.1| hypothetical protein Bpseu9_19397 [Burkholderia pseudomallei 9]
          Length = 251

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 22/240 (9%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 75  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 133

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 193

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 194 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 249


>gi|302037061|ref|YP_003797383.1| putative Ribosomal RNA small subunit methyltransferase E
           [Candidatus Nitrospira defluvii]
 gi|300605125|emb|CBK41458.1| putative Ribosomal RNA small subunit methyltransferase E
           [Candidatus Nitrospira defluvii]
          Length = 245

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 24/239 (10%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
           +TQ   +GD  H+L   LR+K G+++ L +     +  ++  V +        + R    
Sbjct: 13  ETQITLTGDLCHHLRASLRVKSGEHLWLTDEHRRRYRVRVLQVAQQAVTAEILEQRQGPV 72

Query: 79  QSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTY 130
           +S    + +   +K + +D+++QK+ E+G+  I P+++R+      T      + R +  
Sbjct: 73  ESSPPLLLAQAMLKGDHMDWVVQKASELGVRTILPLVSRHGVVRPQTDRIAAQVARWQRI 132

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-- 188
              AA+Q +    P +  P             C ++ A+         E L A+A +P  
Sbjct: 133 ATEAAQQSEQWQPPQVLEPLESRRFFSTHTATCSLLLAERR-------EAL-ALASVPLP 184

Query: 189 -----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
                 + ++IGPEGG+ +EE+ TL        +SLG  ILR+DTAAV A+++VQ+  G
Sbjct: 185 RLPSEQICVIIGPEGGW-AEEEITLALAQHCQAVSLGECILRADTAAVTALSIVQSRLG 242


>gi|193213798|ref|YP_001994997.1| 16S ribosomal RNA methyltransferase RsmE [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087275|gb|ACF12550.1| protein of unknown function DUF558 [Chloroherpeton thalassium ATCC
           35110]
          Length = 247

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 16/221 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
            ++H++  V+R K GD + + +G+   + ++I  +GK S   K+  Q +    ++ +   
Sbjct: 23  QEFHHIVRVVRKKSGDTLWITDGRGTCFQTEIEQIGKNSAELKILSQEKKPAPKTKIAVA 82

Query: 86  FSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
            S +K + R D+ ++K+ E+G+  I P++T  T      +      +R     ++A++Q 
Sbjct: 83  LSLMKASERFDFFLEKATELGVAEILPMMTHRTVSRPAEKQYEKKHERWEKIVLAASKQS 142

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
             +  P ++P    E +LK  D    I +       ENS + L       ++  LIG EG
Sbjct: 143 RQMWFPKLHPIQPFEEVLKRNDEVKLIAY-------ENSAQHLVQGFSGKSILFLIGGEG 195

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           G+   E        F   ++LG  +LR++TA + A+A+V+A
Sbjct: 196 GFTEAEVLAAKQAGF-QEMTLGESVLRAETAGIFAVAMVRA 235


>gi|49187206|ref|YP_030458.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Sterne]
 gi|49481319|ref|YP_038366.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321684|ref|ZP_00394643.1| COG1385: Uncharacterized protein conserved in bacteria [Bacillus
           anthracis str. A2012]
 gi|165872033|ref|ZP_02216673.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           A0488]
 gi|167634645|ref|ZP_02392965.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442]
 gi|167638597|ref|ZP_02396873.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193]
 gi|170687378|ref|ZP_02878595.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465]
 gi|170707490|ref|ZP_02897944.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389]
 gi|177653268|ref|ZP_02935520.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174]
 gi|190566983|ref|ZP_03019899.1| RNA methyltransferase, RsmE family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034476|ref|ZP_03101885.1| RNA methyltransferase, RsmE family [Bacillus cereus W]
 gi|196039365|ref|ZP_03106671.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99]
 gi|218905448|ref|YP_002453282.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820]
 gi|227817087|ref|YP_002817096.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC
           684]
 gi|228916943|ref|ZP_04080504.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935631|ref|ZP_04098445.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948024|ref|ZP_04110309.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229077351|ref|NP_846759.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Ames]
 gi|229093381|ref|ZP_04224486.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42]
 gi|229123850|ref|ZP_04253043.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201]
 gi|229220844|ref|YP_021182.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           'Ames Ancestor']
 gi|229600789|ref|YP_002868600.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248]
 gi|254684068|ref|ZP_05147928.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721902|ref|ZP_05183691.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           A1055]
 gi|254736416|ref|ZP_05194122.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741454|ref|ZP_05199141.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Kruger B]
 gi|254750892|ref|ZP_05202931.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Vollum]
 gi|254757780|ref|ZP_05209807.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Australia 94]
 gi|49181133|gb|AAT56509.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           Sterne]
 gi|49332875|gb|AAT63521.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164712164|gb|EDR17701.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           A0488]
 gi|167513445|gb|EDR88815.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193]
 gi|167530097|gb|EDR92832.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442]
 gi|170127734|gb|EDS96607.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389]
 gi|170668573|gb|EDT19319.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465]
 gi|172081550|gb|EDT66622.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174]
 gi|190561974|gb|EDV15943.1| RNA methyltransferase, RsmE family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993018|gb|EDX56977.1| RNA methyltransferase, RsmE family [Bacillus cereus W]
 gi|196029992|gb|EDX68593.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99]
 gi|218534944|gb|ACK87342.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820]
 gi|227006628|gb|ACP16371.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC
           684]
 gi|228659564|gb|EEL15211.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201]
 gi|228689975|gb|EEL43778.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42]
 gi|228811610|gb|EEM57946.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823991|gb|EEM69809.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842664|gb|EEM87751.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265197|gb|ACQ46834.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248]
 gi|269850267|gb|AAP28245.2| RNA methyltransferase, RsmE family [Bacillus anthracis str. Ames]
          Length = 249

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NG+     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|295092115|emb|CBK78222.1| RNA methyltransferase, RsmE family [Clostridium cf. saccharolyticum
           K10]
          Length = 247

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 18/226 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ +L+ NG+D ++L ++S +    +  ++  +    T+     
Sbjct: 19  TGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEVEAEIIREKEETTELPARV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            +F  + K ++++ +IQK+VE+G   I PV +R        +     + R    + SAA+
Sbjct: 79  CLFQGLPKGDKMELIIQKAVELGAYQIIPVASRRAVVKLDKKKEEAKLRRWNAISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEF-----LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           Q     +P I P   +EF      +  +D  C I +  E+ G E   + +        +A
Sbjct: 139 QSKRRIIPQIAP--VMEFREALSAVSGFDLAC-IPYECES-GMEAVRKFVGQADAGQRIA 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + IGPEGG+   E E       V P+SLG RILR++TA +  ++++
Sbjct: 195 VFIGPEGGFEEAEVEAAVQ-AGVVPVSLGKRILRTETAGLCMLSVL 239


>gi|327412916|emb|CAX67930.1| conserved hypothetical protein [Salmonella bongori]
          Length = 243

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 22/236 (9%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTK 78
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V  +  +  +
Sbjct: 16  TQISLCEDAANHIGRVLRMGPGQVLQLFDGSNQVFAAEIISASKKSVEVQV-MKGETDDR 74

Query: 79  QSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR-------- 128
           +S +      +  +  ++++ IQKS+E+G+  I P+   +++     +D  R        
Sbjct: 75  ESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPL---FSERCGVKLDSERLNKKRQQW 131

Query: 129 -TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I+A EQC    +P I P   LE      +   ++        S N+L        +
Sbjct: 132 QKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQEPGLKLNLHPRAHASINTLP-----LPV 186

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 187 ERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|297617813|ref|YP_003702972.1| hypothetical protein Slip_1648 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145650|gb|ADI02407.1| protein of unknown function DUF558 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 253

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 21/234 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DV 82
            GD+  +L+ VLR+  GD +L+ +G   E L ++    K  I+ +V  Q+  + +    V
Sbjct: 22  EGDEAKHLSKVLRLGPGDEVLVCDGSGKELLVRLETAEKGLIKGRVVNQNHPEREPGLTV 81

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYT-----QNTHYNMDRVRTYTISAAE 136
             +    K  ++D+++QK+VE+G+  I PV+T R T     +   + + R       A +
Sbjct: 82  GLVQGVGKGEKMDFIVQKAVELGISRIYPVMTDRGTVRLDGERAFHRVQRWEKIAKEACK 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-------ETCGSENSLEKLHAIAHIPN 189
           QC    +P I   T L  ++        + F +       +T   EN+      I     
Sbjct: 142 QCGRTVVPEIKGITDLTVVMDECRDIPGLFFYEGEWKRPLKTILRENA-----RILRDRG 196

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           V + IG EGG+   E ET      +    LGPRILR++TAA+AA+  V    GD
Sbjct: 197 VILYIGAEGGFSLREAETARKRGILMA-GLGPRILRTETAALAAITAVMYELGD 249


>gi|120613393|ref|YP_973071.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax citrulli
           AAC00-1]
 gi|120591857|gb|ABM35297.1| protein of unknown function DUF558 [Acidovorax citrulli AAC00-1]
          Length = 240

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 25/219 (11%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
            VLR++ GD I LF+G+ GE+ + ++ +G+S +   V+     + +     ++   +  N
Sbjct: 29  QVLRLQPGDAITLFDGRGGEYAATVARMGRSDVEVLVDAHDPVEREAGRSVHLVVGMPAN 88

Query: 93  -RLDYMIQKSVEMGMGAIRPVITRYT-----------QNTHYNMDRVRTYTISAAEQCDI 140
            R+D++++K+ E+G+  I+PV    +           +  H+          +A EQC  
Sbjct: 89  ERMDWLVEKATELGVARIQPVAAARSVLKLSGERALKRQAHWQ-----AIAAAACEQCGR 143

Query: 141 LTLPFIYPPTTLE--FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
             +P +  P  L     L       ++V +      E S     A A    V +L GPEG
Sbjct: 144 NRVPRVEAPVPLADWLRLPPAPGAARLVLSLR----EGSRPLHDAAAGAACVQVLHGPEG 199

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E++      F+ P SLGPR+LR++TA+VAA++L+
Sbjct: 200 GLAPHEEDLALERGFL-PASLGPRVLRAETASVAALSLL 237


>gi|301055803|ref|YP_003794014.1| RNA methyltransferase [Bacillus anthracis CI]
 gi|300377972|gb|ADK06876.1| RNA methyltransferase [Bacillus cereus biovar anthracis str. CI]
          Length = 249

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NG+     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVDETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|284048078|ref|YP_003398417.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM
           20731]
 gi|283952299|gb|ADB47102.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM
           20731]
          Length = 244

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK---VEYQSRSQTKQSDV 82
           G   H++ HVLRMK G+ + + +      + KI+  G++ R     VE   +S      V
Sbjct: 18  GQDAHHITHVLRMKLGEQLQIVSLDQVAAVMKITGFGEN-RVDLALVETLEKSHEPSVKV 76

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             I    K ++L+++IQK++E+G+  IRP I  ++             +R +    +AA+
Sbjct: 77  TLIQGLPKQDKLEWVIQKAIELGVTEIRPAIMDHSVVKVDPAKAAKKQERWQKIAEAAAK 136

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q     +P +  P     ++       +IV A E   +    E L A      +A LIGP
Sbjct: 137 QSKRDIIPQVALPAKFRDIVTQCPAELKIV-AYEVEDTRGIREVLAAHKDARTIAFLIGP 195

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG   +E      L + + +SLGPRI+R++TAA+A +  +    G+
Sbjct: 196 EGGISKDEFALTQELGWHS-VSLGPRIMRTETAALATLTAIMYETGN 241


>gi|313896749|ref|ZP_07830297.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974666|gb|EFR40133.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 248

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 26/249 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVG 62
           ++RLF  +P  +  + + +G   H+LA V+R + G  + +  G DG      ++ ++   
Sbjct: 1   MRRLF--YPGELTPEIRITGGDAHHLARVMRAQLG-AVHVVAGTDGRAARMTVTAVARDA 57

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY- 116
            ++R    Y       +++V  + + +K  + D+++QK+VE+G  A+ P++T     RY 
Sbjct: 58  VTLRLD-SYVEDDAPARAEVILVQALLKGEKTDFVVQKAVELGAAALHPIVTEHVVVRYD 116

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETC 172
            +       R +     AA+QC  L L  + P  +++ +L + +     +  ++F    C
Sbjct: 117 AKKAAAKTARWQKIADEAAKQCGRLLLMHVAPVGSIDSILGDAEIFGGVDTTVIF----C 172

Query: 173 GSENSLEKLHAIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                ++ + A+        V +++G EGG+   E   L +     P+SLG  ILR++TA
Sbjct: 173 YEGERMQSMRAVLRTVTSARVVLIVGAEGGFSPAEAARL-TAAGAQPVSLGHLILRAETA 231

Query: 230 AVAAMALVQ 238
           A+AA+ +VQ
Sbjct: 232 AIAALTVVQ 240


>gi|113477044|ref|YP_723105.1| 16S ribosomal RNA methyltransferase RsmE [Trichodesmium erythraeum
           IMS101]
 gi|110168092|gb|ABG52632.1| protein of unknown function DUF558 [Trichodesmium erythraeum
           IMS101]
          Length = 258

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 18/228 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS------ 80
           +Q HYL  VLR+  GD  ++ +G+   WL+K++     I  K E  +  + + +      
Sbjct: 24  EQQHYLRRVLRLGVGDKFIVMDGEGKWWLAKLT---PDISIKTELIAILEQEIAIQNELP 80

Query: 81  -DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQ 137
            ++  I +  K N  D ++++S E+G+  I PVI+  T  + +   + R +     AAEQ
Sbjct: 81  IEITLISALPKGNSFDEVVRQSTELGITHIFPVISSRTVLKPSPQKLKRWQKIATEAAEQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS----LEKLHAIAHIPNVAI 192
            +   +P I         L  ++  N    +    C + N+    LE L     + ++ I
Sbjct: 141 SERQVVPKIRETVEYSVALSLFEKQNLFTNYHKYICVARNNYPLLLESLLDNQKLESIVI 200

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            IGPEGG+   E E   ++ F   +SLG RILR  TA + A++LV A+
Sbjct: 201 AIGPEGGWTKGEIEAAIAIGF-QAVSLGKRILRGVTAPLVALSLVAAV 247


>gi|167947327|ref|ZP_02534401.1| hypothetical protein Epers_12597 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           +  R+D+ +QKSVE+G+ AI P++T         +     M   +   ISA EQ     +
Sbjct: 34  RGERMDFALQKSVELGVSAIVPLVTERCVVRLDPRRQQKRMTHWQKIVISACEQSGRCRV 93

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHS 202
           P +  P   + +L+      +++          + E LH ++  P+ + +L+GPEGG   
Sbjct: 94  PQLEQPGRFDEMLQQLPATMRLML------DHRASESLHDLSSRPDAIVLLVGPEGGLSP 147

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           EE+       F   + LGPR+LR++TA +AA+A +Q   G  Y
Sbjct: 148 EERRLAQQAGF-KGVRLGPRVLRTETAPLAALAAIQTPVGGLY 189


>gi|295398031|ref|ZP_06808087.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294973789|gb|EFG49560.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 254

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 17/254 (6%)

Query: 7   LKRLFVDFPLC-IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64
           ++R F++     +  Q +   + YH++ +V+RM+ GD ++L    +  ++ + IS  GK 
Sbjct: 1   MQRYFIEEETVQLNDQIEMDKEAYHHMLNVMRMQIGDQVMLVTQTEQVFIGELISDQGKK 60

Query: 65  IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              + VE +   +    D        K ++LD ++QK+ E+G   I PV  RY+      
Sbjct: 61  AVLRLVELREEIKEIPVDTTLFVGLPKGDKLDLIVQKATELGARHIVPVAMRYSVTKWDQ 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +     +DR++     AAEQ     +P I   +  + ++  L  +D  C         G 
Sbjct: 121 KKAGKKIDRLKKIAKEAAEQSHRTFVPTIEDLHSVSMVKNRLGEFDQVCVAYEEVAKSGE 180

Query: 175 ENSLEKLHA-IAHIPNVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAA-- 230
              L K +A +     +A + GPEGG HS+E  +    L  V    LGPRILR++TA   
Sbjct: 181 AALLAKTYASLKAKDRIAFITGPEGGIHSDEIADFTDGLDHVHLCGLGPRILRTETAPLY 240

Query: 231 -VAAMALVQAICGD 243
            +++++    + GD
Sbjct: 241 LLSSLSFATELLGD 254


>gi|228941478|ref|ZP_04104028.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228967380|ref|ZP_04128414.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228974408|ref|ZP_04134976.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981003|ref|ZP_04141305.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407]
 gi|228778663|gb|EEM26928.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407]
 gi|228785244|gb|EEM33255.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792306|gb|EEM39874.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228818128|gb|EEM64203.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942094|gb|AEA17990.1| surface protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 249

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|313205520|ref|YP_004044697.1| hypothetical protein Riean_0009 [Riemerella anatipestifer DSM
           15868]
 gi|312444836|gb|ADQ81191.1| protein of unknown function DUF558 [Riemerella anatipestifer DSM
           15868]
 gi|315023392|gb|EFT36402.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
           anatipestifer RA-YM]
 gi|325335048|gb|ADZ11322.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
           anatipestifer RA-GD]
          Length = 231

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYI 85
           D+ H+++ VLRMKEG+ + + +GK       +   GK +   + E Q+++      +   
Sbjct: 18  DEQHHISKVLRMKEGEMLYVTDGKGNVAKGNLILEGKKVELNILEIQTKTPPFSPYLHIA 77

Query: 86  FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K  +R ++ ++K+ EMG+  I  ++T  ++  H N+D+++   I+A++Q    +L 
Sbjct: 78  IAPTKNIDRTEFFVEKATEMGISEISFLLTEKSERKHLNIDKIQKKIIAASKQ----SLR 133

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           + +P       L+ +    Q   A+ T    C        L  I  +  V  LIGPEG +
Sbjct: 134 YHFPKVN---DLQKFTSFMQTQTAENTFVAHCDKAFKRVSLSEIPLVDKVCFLIGPEGDF 190

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              E E L     V  +SLG + LR++TA V   A
Sbjct: 191 SLSEIELLLE-KGVQAISLGNQRLRTETAGVFVAA 224


>gi|74316173|ref|YP_313913.1| 16S ribosomal RNA methyltransferase RsmE [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055668|gb|AAZ96108.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 242

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 24/217 (11%)

Query: 41  GDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           GD + LFNG+ GE+ + +  + +     +I    E +  S+   +  Q I S     R+D
Sbjct: 37  GDALTLFNGRGGEYTASVERITRDEVAVAITGFREIERESRLAITLAQGISS---GERMD 93

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           Y +QK+ E+G+ AI+P+  + +      +     +   +    SA EQC    LP I  P
Sbjct: 94  YTLQKATELGVTAIQPIAAKRSVVKLAGERAEKRVAHWQGVVASACEQCGRNRLPSIAAP 153

Query: 150 TTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKET 207
             L ++L    D     +       S  +  +L  +A      +LI GPEGG+ ++E   
Sbjct: 154 LPLAQWLGTGTDERLLFL-------SPLAQARLADLAAPSGRDVLIAGPEGGFEADEIAA 206

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           LH+   V P+ LGPR+LR++TAA+AA+A +Q + GD+
Sbjct: 207 LHAAGAV-PIRLGPRVLRTETAALAALAAMQTLWGDF 242


>gi|295103834|emb|CBL01378.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           SL3/3]
          Length = 247

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 15/231 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DVQ 83
           G   H+LA V+R K GD ++L +G   E+ + I+  G+  + F VE    S  + + +V 
Sbjct: 19  GADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDRVDFAVEPGYPSAAEPTVEVT 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139
            +    K ++L+ +I+  VE+G   I P  +RY     +      +R     + AA+QC 
Sbjct: 79  LLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKKEEQKNERYNRIALEAAKQCG 138

Query: 140 ILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAIL 193
              LP +  P      + +++D    ++F  E  G+   L +L A A   +     +AI+
Sbjct: 139 RGVLPDVALPLPNFGAVCRSFDQYDLVLFCYECGGA--PLRQLLAEAKPADGQKLRLAIV 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            G EGG+ +EE E   S    T + LGPRILR +TA +A ++ V  + G+ 
Sbjct: 197 TGAEGGFAAEEAEMAASAGAKT-VGLGPRILRCETAPLAVLSAVMTLTGNL 246


>gi|313633215|gb|EFS00088.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri
           FSL N1-067]
          Length = 255

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKS 64
           ++R F+D  +  + +  + +G+ +H++  V+RMKEGD + ++F          IS   + 
Sbjct: 1   MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYT 117
           +   V+      T+      I S + K ++L+Y+IQKS E+G        A R V+    
Sbjct: 61  VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GS 174
           +     +DR++     AAEQ     +P ++   +L E LL N   +  +V  +E+   G 
Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180

Query: 175 ENSLEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + +L  L   A +PN ++L+  GPEGG   +E   L  L  V    LGPRILR++TA + 
Sbjct: 181 DRTLASLFKEA-VPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLY 238

Query: 233 AMA 235
            ++
Sbjct: 239 VLS 241


>gi|225873892|ref|YP_002755351.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791516|gb|ACO31606.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum
           ATCC 51196]
          Length = 243

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 13/211 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
           +G+Q  +L  VLR + G    +  G D  W   I+ + G ++RF +  +  +      + 
Sbjct: 19  TGEQASHLIRVLRAQPGMEFDIVAG-DRVWHGVIAGITGDAVRFNLVAEVEADPALP-IT 76

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAEQC 138
            + +  K +R+++ I+K+ E+G+  I+PVI R +     Q     ++R R     AA+Q 
Sbjct: 77  LLLAVFKFDRMEWAIEKATELGVERIQPVIARRSEKHLAQAAAARVERWRRIAREAAKQS 136

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH----IPNVAILI 194
               +P I  P  L+  ++    + + + A++   +        A+A     IP + I +
Sbjct: 137 RRSDIPEIDEPLPLKTAVRQPGEHLRFLLAEQERSTTFRFALGEALAQAGDEIPKIEIAV 196

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           GPEGG+ +EE E L        +SLGPRILR
Sbjct: 197 GPEGGWTAEE-EALFDAEGWKAVSLGPRILR 226


>gi|228902836|ref|ZP_04066980.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222]
 gi|228856792|gb|EEN01308.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222]
          Length = 249

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PSSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|76812178|ref|YP_334841.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
           1710b]
 gi|226196890|ref|ZP_03792469.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pakistan 9]
 gi|229269497|ref|YP_109550.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
           K96243]
 gi|254190942|ref|ZP_04897448.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259381|ref|ZP_04950435.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a]
 gi|76581631|gb|ABA51106.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           1710b]
 gi|157938616|gb|EDO94286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225931150|gb|EEH27158.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pakistan 9]
 gi|254218070|gb|EET07454.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a]
          Length = 255

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240

Query: 230 AVAAMALVQAICGDW 244
             A +A + A  G W
Sbjct: 241 GAAVLAALAARWGGW 255


>gi|52210978|emb|CAH36966.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 246

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 22/253 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K  R
Sbjct: 1   MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK--R 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116
             +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+   
Sbjct: 58  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 118 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPR- 176

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA  
Sbjct: 177 --ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETAGA 233

Query: 232 AAMALVQAICGDW 244
           A +A + A  G W
Sbjct: 234 AVLAALAARWGGW 246


>gi|126439667|ref|YP_001060446.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
           668]
 gi|237813838|ref|YP_002898289.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
           MSHR346]
 gi|254199135|ref|ZP_04905550.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13]
 gi|126219160|gb|ABN82666.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 668]
 gi|169656965|gb|EDS88362.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13]
 gi|237506144|gb|ACQ98462.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
           MSHR346]
          Length = 255

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240

Query: 230 AVAAMALVQAICGDW 244
             A +A + A  G W
Sbjct: 241 GAAVLAALAARWGGW 255


>gi|319778530|ref|YP_004129443.1| Ribosomal RNA small subunit methyltransferase E [Taylorella
           equigenitalis MCE9]
 gi|317108554|gb|ADU91300.1| Ribosomal RNA small subunit methyltransferase E [Taylorella
           equigenitalis MCE9]
          Length = 244

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 13/241 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F   PL I +  K   D  ++    LR+KEG  I LF+G + E+   IS+      F 
Sbjct: 5   RFFYTLPLEIGSTIKLPKDITNHAGRSLRLKEGTKISLFSGDNTEYHGTISFNSSDAFFN 64

Query: 69  VE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           VE  +  S+     +         +++D++I+K+VE+G+    P+I + +      +   
Sbjct: 65  VEDIKEISRELPLRIGLAQGLATGDKMDFIIEKAVEIGVSDFYPIIAKRSVLKLNNEKFE 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEK 180
             +       ISA+EQC    +  ++ P  + EF+    D    I   D       + E 
Sbjct: 125 KKLAHWSRIIISASEQCGRNKIMQLHQPQDINEFIQNTSDSLYLIAHPDAQSNFLGTAE- 183

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                   N  +LIGPEGG+ S E E L        +SLG R+LR++TA +  ++ + AI
Sbjct: 184 ---TEDFDNSIVLIGPEGGWDSTELEKLRK-ENSRLISLGQRVLRTETAGIVTVSYLTAI 239

Query: 241 C 241
            
Sbjct: 240 I 240


>gi|163791113|ref|ZP_02185532.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7]
 gi|159873585|gb|EDP67670.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7]
          Length = 253

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 13/222 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQ 83
           GD +H++  V+RMK G  + L       ++++I+ +  + +    VE   R Q    +V 
Sbjct: 22  GDSFHHMVKVMRMKVGHRVYLVTKDQKAFIAEINAIEDQDVLLNWVEDDLRQQELPIEVT 81

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQ 137
                 K ++LD +IQK  E+G  A  P      IT++  +      +R++     AAEQ
Sbjct: 82  IASGLPKGDKLDLIIQKGTELGAHAFIPFAGSFSITKWDAKKAAKKTERLQKIAQEAAEQ 141

Query: 138 CDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCGSE--NSLEKLHAIAHIPNVAIL 193
                +P + P ++++ L  +KN    C + + +     E  N ++ L  +     + I+
Sbjct: 142 SHRTKIPTVQPLSSVKQLVEMKNQFDVCLVAYEESAKAGEDQNFVKGLKLLPAGGKLLIV 201

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            GPEGG   EE +      F+ P +LGPRILR++TA + A+A
Sbjct: 202 FGPEGGLSKEEVDAFIESGFL-PCALGPRILRTETAPLYALA 242


>gi|300112836|ref|YP_003759411.1| hypothetical protein Nwat_0111 [Nitrosococcus watsonii C-113]
 gi|299538773|gb|ADJ27090.1| protein of unknown function DUF558 [Nitrosococcus watsonii C-113]
          Length = 243

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 29/229 (12%)

Query: 14  FPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           FPL +      S D+    Y+  VLR++ G  + LF+G+  E+ + +  V K        
Sbjct: 8   FPLSLSIGSSVSLDERTLQYVIRVLRLRLGAQLRLFDGRGAEYQAVLEMVEKR------- 60

Query: 72  QSRSQTKQSDVQYIFSPI---------KTNRLDYMIQKSVEMGMGAIRPVITRYTQ---N 119
            +R +  +    Y+ SP+         +  R+DY +QK+VE+G+  I P++T  +    +
Sbjct: 61  AARVRILERIEHYVESPLHIVLGQGISRGERMDYALQKAVELGVSHIVPLLTERSSVNFS 120

Query: 120 THYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           T     R+R +    ISA EQC    +P +  P +L   L + DH    V  D    SE 
Sbjct: 121 TGRAEKRLRHWQGVIISACEQCGRNYIPPVEIPRSLADFLGD-DHGGLAVLLDPR--SER 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L+ L  +     + +LIGPEGG +  E +      F+  + LGPRILR
Sbjct: 178 PLKAL-PLPLDNRLILLIGPEGGLNEIEIKQAQQADFIG-VRLGPRILR 224


>gi|198284928|ref|YP_002221249.1| hypothetical protein Lferr_2857 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666821|ref|YP_002427610.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249449|gb|ACH85042.1| protein of unknown function DUF558 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519034|gb|ACK79620.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 241

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 25/227 (11%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-------IRFKVEYQSRSQTKQSDV 82
           H+L  VLR + G  + LFNG DG W+ + S  G S       IR +   Q RS      +
Sbjct: 26  HHLLKVLRARHGQELTLFNG-DG-WMYQASLTGISGAQAQLAIRGR---QPRSTGSPLAI 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Q      +  R D+ +QK+VE+G+  I+PV  R+             + R R   I+A E
Sbjct: 81  QVFLPLTRGERWDWSLQKAVELGVRWIQPVACRHGVVQLSEARGEKRLARWRDIVIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q    T+P + PP  LE     W       F  +  G +   +  H     P + +L GP
Sbjct: 141 QSGSTTIPELAPPVALE---TAWAGVRGAAFVLDPEGGQRFTDLGHPG---PEITLLSGP 194

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG  +EE     +  F + L +GPRILR++TAA+AA+A+ QA+ GD
Sbjct: 195 EGGLAAEEVAAAQAHGFRS-LRMGPRILRAETAAIAAIAVAQALWGD 240


>gi|169829246|ref|YP_001699404.1| hypothetical protein Bsph_3794 [Lysinibacillus sphaericus C3-41]
 gi|168993734|gb|ACA41274.1| UPF0088 protein [Lysinibacillus sphaericus C3-41]
          Length = 245

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 41/256 (16%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL----------FNGKDGEWLS 56
           ++R F++  +      + SG+   ++  V+RMK+GD I++            G +G+ ++
Sbjct: 1   MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIIVVAQNIAHICKITGFEGDEVA 57

Query: 57  KISYVGKSIRFKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAIRP-- 111
            I   G++I           + +  +Q   +   P K ++L+ + QK+ E+GM A+ P  
Sbjct: 58  -IDATGETI----------PSSELPIQITVACGLP-KGDKLELITQKATELGMFALLPFE 105

Query: 112 ----VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
               ++    +      +R++     AAEQ     +P +Y P T + LL++ D    +  
Sbjct: 106 AERSIVKWDKKKGAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLQDIDQFDAVFI 165

Query: 168 ADETCGSENS----LEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           ADE            +KL  +    + ++ I+ GPEGG   +E E L      T +SLGP
Sbjct: 166 ADEEDAKAEKRTRFADKLKLVHEKKLTSILIIFGPEGGISRKEAEALLQAGAQT-MSLGP 224

Query: 222 RILRSDTAAVAAMALV 237
           RILR++TA + A++ +
Sbjct: 225 RILRAETAPLYALSAI 240


>gi|300310746|ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1]
 gi|300073531|gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 22/230 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +Q  +  HVLR++ GD I LFNG+ GE+ + +S V K  R   + ++ S  +++++ Y  
Sbjct: 20  EQIAHHIHVLRLQPGDAITLFNGEGGEYTATLSAVEKK-RAHAQVKTFS-PREAELPYAL 77

Query: 87  SPIKT----NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAE 136
           +  +      ++D++++K+VE+G  A++P      V+    +         +    +AAE
Sbjct: 78  TLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGERAEKKQAHWQGIIHAAAE 137

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA--HIPN-VAIL 193
           QC    LP +   T  +  +   D + +I+       S    E L   A  H P  V ++
Sbjct: 138 QCGRNRLPHLGEVTEFKRWIAQSDLHRRILL------SPRGAEPLSGWARHHPPQAVTLV 191

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +GPEGG+ S+E+E L        LS+G R+LR++TA +AA+A + A+ G+
Sbjct: 192 VGPEGGF-SDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240


>gi|217420819|ref|ZP_03452324.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           576]
 gi|217396231|gb|EEC36248.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           576]
          Length = 255

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTTRGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240

Query: 230 AVAAMALVQAICGDW 244
             A +A + A  G W
Sbjct: 241 GAAVLAALAARWGGW 255


>gi|295677690|ref|YP_003606214.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002]
 gi|295437533|gb|ADG16703.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002]
          Length = 246

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 46/265 (17%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FVD  L          D   ++A VLR++ GD+++LFNG+ GE+ +++  V + S 
Sbjct: 1   MPRFFVDALLYPDDVIALPDDVVRHVA-VLRLQPGDSLVLFNGRGGEYGAELVEVERRSA 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYT-Q 118
           R K+ E+++        +         +++D++I+K+VE+G     P+ T     R T +
Sbjct: 60  RVKIGEFRAVEVEPPYRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATARSVVRLTGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYP----------------PTTLEFLLKNWDHN 162
                    +    ++ EQC    LP + P                P  L  LL      
Sbjct: 120 RAQRRQQHWQGVVRASCEQCGRNRLPDVTPVGEIGPWLDTLSREPAPDELRLLLS---PR 176

Query: 163 CQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219
             I FA              A+   P    V +LIGPEGG  ++E+       F T + L
Sbjct: 177 ASIGFA--------------ALPDAPPPGGVTLLIGPEGGLSADEEAAAVEQGF-TAVGL 221

Query: 220 GPRILRSDTAAVAAMALVQAICGDW 244
           GPR+LR++TA +A +A + A  G W
Sbjct: 222 GPRVLRTETAGIAVLAALAARWGGW 246


>gi|218899479|ref|YP_002447890.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842]
 gi|218543817|gb|ACK96211.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842]
          Length = 249

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|78224577|ref|YP_386324.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter metallireducens
           GS-15]
 gi|78195832|gb|ABB33599.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 263

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 19/234 (8%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD- 81
           +  GD + ++  VLR+K    + L +G   E    I  +G+     V  + R        
Sbjct: 19  RIEGDLFRHMVKVLRLKIDTRVRLADGHGVECAGIIQEIGRD-HLTVAVEERHAVAPVGG 77

Query: 82  ---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH-YNMDRVRTYTI 132
              +  I    K  +++ ++QK  E+G+  + P      ++R   +     + R +    
Sbjct: 78  SLRITLIQGLPKGEKMELILQKGTELGVNEVVPFQADRSVSRIPADRQDERLRRWQRIAA 137

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---N 189
            AA Q   L +P +     ++  +++ DH+ +++  +E    E +     AI   P   +
Sbjct: 138 EAARQAGRLDIPTVQLAQGMDEAVRDTDHDLKLLLWEE----ERATTLQGAINVRPRPAS 193

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +A+++GPEGG   EE ET     F+ P++LG RILR++TA +A +A++Q + GD
Sbjct: 194 IAVIVGPEGGLTREEAETARRTGFI-PVTLGRRILRTETAGIALLAILQYLYGD 246


>gi|326569446|gb|EGE19506.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis BC8]
          Length = 246

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 30/242 (12%)

Query: 7   LKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
           + R FVD PL     G+         H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIITLPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIDK 60

Query: 63  KSIRFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           KS   K++     +R+   ++ +  + S  + +R+DY IQK+ EMG+  I  + +   Q 
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMS--RGDRMDYAIQKATEMGVHCIHLLTSDRCQ- 117

Query: 120 THYNMDR-------VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            H   DR        ++  ++A EQC +  +P          LL  W  NCQ        
Sbjct: 118 AHLKYDRDFKKITHWQSVAVAACEQCGMNIIPN----IIAPILLDEWVANCQDELKLVLA 173

Query: 173 GSEN--SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            SEN  +  KL     +P N+++LIG EGG    E +      FV P  +G R+LR++TA
Sbjct: 174 LSENNPTFNKL-----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETA 227

Query: 230 AV 231
            V
Sbjct: 228 PV 229


>gi|224826821|ref|ZP_03699921.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002]
 gi|224601041|gb|EEG07224.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002]
          Length = 242

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 17/220 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT-- 91
            VLR+  GD I LFNG+ GE+ + +S V K     V  +     ++S V    +   +  
Sbjct: 27  QVLRLNPGDAITLFNGRGGEYPATLSRVLKRDAECVLGEFADVARESPVWLGLAQAISGG 86

Query: 92  NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           +++++ +QK VEMG+   +P      V+    +     + R +   I+A EQC   ++P 
Sbjct: 87  DKMEFTLQKGVEMGVSVFQPLTAERSVVRLSGERADKRVARWQEIVIAACEQCGRNSVPE 146

Query: 146 IYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI-GPEGGYHSE 203
           + P  TL E+L +  + + ++V       S    ++L  IA  P  A L+ GPEGG  + 
Sbjct: 147 VRPILTLAEWLRELPEADARLVL------SPLGTQRLADIAAAPASAWLMAGPEGGLSAR 200

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E+       + TPL LGPRILR++TAA+AA+A +Q + GD
Sbjct: 201 EEGAAIEAGW-TPLKLGPRILRTETAALAAVAAIQTVWGD 239


>gi|300118699|ref|ZP_07056427.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1]
 gi|298723948|gb|EFI64662.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1]
          Length = 249

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      +       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|194335493|ref|YP_002017287.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307970|gb|ACF42670.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 247

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           GD++H+L  VLR K G+ IL+ +G      + I+ +GK S    +   SR     ++V  
Sbjct: 22  GDEFHHLVRVLRKKTGEKILVTDGNGLRCEASIAEIGKTSFTADILACSRIDRPNTEVTV 81

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
             S +K   R +  ++K+ E+G+  I P++T  T      +     ++R RT  +SAA Q
Sbjct: 82  ALSLLKAPQRFELFLEKATELGVSTIIPMLTARTLSHPSNEKVQGKLNRWRTIMLSAARQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                LP +  P T +       ++ +++        E S            +  LIG E
Sbjct: 142 SKRHYLPQLTEPLTFKKAAALQGYDLKLI------PYELSEAPPKVKCSGKKILFLIGGE 195

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GG+ + E E   +  F   LS G  ILR++TA + A+ALV+
Sbjct: 196 GGFTANEIEEARAAGF-NELSFGKTILRAETAGIFAVALVR 235


>gi|167904305|ref|ZP_02491510.1| hypothetical protein BpseN_18786 [Burkholderia pseudomallei NCTC
           13177]
          Length = 262

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      VI 
Sbjct: 75  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVIR 133

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 193

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 194 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTET 248


>gi|91785218|ref|YP_560424.1| hypothetical protein Bxe_A0561 [Burkholderia xenovorans LB400]
 gi|91689172|gb|ABE32372.1| Conserved hypothetical protein 46 [Burkholderia xenovorans LB400]
          Length = 251

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 24/254 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV  PL      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  V + S 
Sbjct: 6   MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYT-- 117
           + ++ E+++        +         +++D++I+K+VE+G  A  P+ T     R T  
Sbjct: 65  KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLTGE 124

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADE 170
             Q  H +   +     ++ EQC    LP + P   +   L        + + +I+ +  
Sbjct: 125 RAQRRHAHWQGI---VRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPR 181

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
              +  S   L A      V +L+GPEGG+ + E+       F T + LGPR++R++TA 
Sbjct: 182 ---ASISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAG 237

Query: 231 VAAMALVQAICGDW 244
           +A ++ + A  G W
Sbjct: 238 IAVLSALAAGWGGW 251


>gi|37523950|ref|NP_927327.1| hypothetical protein gll4381 [Gloeobacter violaceus PCC 7421]
 gi|35214956|dbj|BAC92322.1| gll4381 [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 19/241 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLF+D         +    Q HYL  VLR+++G + ++ +G    W  + +  G ++R  
Sbjct: 6   RLFLDPVQFSGDTARLDPAQSHYLRQVLRLRDGASCIVGDGLGNTW--QATLAGDTVRLG 63

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
                R+      V    +  K +R D+++QKS E+G   I P++   +  Q       R
Sbjct: 64  -SLLPRTGELPLPVTIACAVPKGDRWDWLLQKSTELGADRIVPLVCERSVVQPDAKRHKR 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +     AAEQ +   LP + PP      L++     +++     C +      L  + +
Sbjct: 123 WQAIVREAAEQSERAVLPVVEPPALFGMFLRHPARGTRLI-----CTARGVRPPL--LNY 175

Query: 187 IPNVA--ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +P  A  +L GPEGG+   E        +    SLG RILR++TA + A+  + A    W
Sbjct: 176 LPAAALTLLFGPEGGFSETEVAAATDAGYQV-CSLGSRILRTETAPLLALGWIAA----W 230

Query: 245 Y 245
           Y
Sbjct: 231 Y 231


>gi|296160467|ref|ZP_06843283.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1]
 gi|295889216|gb|EFG69018.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1]
          Length = 246

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 24/254 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV  PL      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  V + S 
Sbjct: 1   MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
           + ++ E+++        +         +++D++I+K+VE+G  A  P+ T  +       
Sbjct: 60  KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLSGE 119

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADE 170
             Q  H +   +     ++ EQC    LP + P   +   L        + + +I+ +  
Sbjct: 120 RAQRRHAHWQGI---VRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPR 176

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
              +  S   L A      V +L+GPEGG+ + E+       F T + LGPR++R++TA 
Sbjct: 177 ---ASISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAG 232

Query: 231 VAAMALVQAICGDW 244
           +A ++ + A  G W
Sbjct: 233 IAVLSALAAGWGGW 246


>gi|313203702|ref|YP_004042359.1| hypothetical protein Palpr_1227 [Paludibacter propionicigenes WB4]
 gi|312443018|gb|ADQ79374.1| protein of unknown function DUF558 [Paludibacter propionicigenes
           WB4]
          Length = 233

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQS-DVQY 84
           ++  +   VLRM+ GD I + +G  G + + IS    K   F+++       K+   +  
Sbjct: 18  EESKHAVKVLRMQVGDAISVVDGVGGFYNALISNPHPKHCEFEIKKTILEFGKRDYKIHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K   RL++ I+K+ E+G+  I P+I R+++      +R+    +SAA+Q      
Sbjct: 78  AIAPTKNIERLEWFIEKATEIGIDQITPIICRFSERKIVKAERLEKIIVSAAKQSLKAYF 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P + P  T + L+    HN    F    C  E+     + I    +V ILIGPEG +  E
Sbjct: 138 PILNPLCTFDELINK--HNASQKFIAH-CYEEDKKLLQNEIQKSSDVLILIGPEGDFSKE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E ++     F+ P+SLG   LR++TA V A
Sbjct: 195 EVQSAILHDFI-PVSLGESRLRTETAGVVA 223


>gi|228929355|ref|ZP_04092379.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830306|gb|EEM75919.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 249

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NG+     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEIIVLREHNFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|53725660|ref|YP_104018.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei ATCC
           23344]
 gi|124384319|ref|YP_001027236.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC
           10229]
 gi|126452434|ref|YP_001067709.1| hypothetical protein BURPS1106A_3472 [Burkholderia pseudomallei
           1106a]
 gi|166998553|ref|ZP_02264411.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20]
 gi|229008328|ref|YP_991742.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei
           SAVP1]
 gi|229027672|ref|YP_001082829.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC
           10247]
 gi|242315666|ref|ZP_04814682.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b]
 gi|254178856|ref|ZP_04885510.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
           10399]
 gi|254202737|ref|ZP_04909100.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH]
 gi|254208079|ref|ZP_04914429.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU]
 gi|254299290|ref|ZP_04966740.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           406e]
 gi|52429083|gb|AAU49676.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
           23344]
 gi|124292339|gb|ABN01608.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10229]
 gi|126226076|gb|ABN89616.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
           1106a]
 gi|147746984|gb|EDK54061.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH]
 gi|147751973|gb|EDK59040.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU]
 gi|157808975|gb|EDO86145.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           406e]
 gi|160694770|gb|EDP84778.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
           10399]
 gi|242138905|gb|EES25307.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b]
 gi|243065237|gb|EES47423.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20]
          Length = 255

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 30/259 (11%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +     +   R    ++ EQC    LP I P       ++ +D     + A    G+
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP-------VRGFDAWLDALPATPADGA 177

Query: 175 ENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              L    A    A +P      +V +LIGPEGG   +E++   +  F   LSLGPR+LR
Sbjct: 178 LRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLR 236

Query: 226 SDTAAVAAMALVQAICGDW 244
           ++TA  A +A + A  G W
Sbjct: 237 TETAGAAVLAALAARWGGW 255


>gi|317405816|gb|EFV86104.1| hypothetical protein HMPREF0005_02771 [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 10/241 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F D PL    +        H+   VLR++ G+ ++LFNG+ GE+ + +   GK+   +
Sbjct: 5   RFFCDAPLSAGARIALPEALAHHAIRVLRLRAGEPMVLFNGQGGEYPAVLEIEGKAGFAQ 64

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTH 121
           +  +  R       +  +      +++D++++K+VE+G      + A R V+        
Sbjct: 65  LGAFDPREAELAGRITLVQGLPAGDKMDWVVEKAVELGAAHVCPIAAQRSVLQLAGPRLE 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +   +    SAAEQC    L  +  P  L   L       +++   +     +   +L
Sbjct: 125 KRVAHWQRIAQSAAEQCGRNRLMAVDAPMALADWLAQPADGLRLLCHPDA--DADLAGRL 182

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            A   + ++ +L+GPEGG+ S+++  L     V  +  GPR+LR++TA +A ++   A+ 
Sbjct: 183 GATPGLQSLTLLVGPEGGW-SDKELALAREAGVQAVRFGPRVLRTETAGLALISAAGALL 241

Query: 242 G 242
           G
Sbjct: 242 G 242


>gi|238561245|ref|ZP_00442303.2| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse
           4]
 gi|121227903|gb|ABM50421.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei
           SAVP1]
 gi|126242088|gb|ABO05181.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10247]
 gi|238524927|gb|EEP88357.1| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse
           4]
          Length = 246

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 30/257 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K  R
Sbjct: 1   MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK--R 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116
             +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+   
Sbjct: 58  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLS 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   R    ++ EQC    LP I P       ++ +D     + A    G+  
Sbjct: 118 GERADKRVSHWRGVVRASCEQCGRNRLPEIAP-------VRGFDAWLDALPATPADGALR 170

Query: 177 SLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            L    A    A +P      +V +LIGPEGG   +E++   +  F   LSLGPR+LR++
Sbjct: 171 LLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTE 229

Query: 228 TAAVAAMALVQAICGDW 244
           TA  A +A + A  G W
Sbjct: 230 TAGAAVLAALAARWGGW 246


>gi|29726851|pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of
           Haemophilus Influenzae. Northeast Structural Genomics
           Consortium Target Ir73.
 gi|29726852|pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of
           Haemophilus Influenzae. Northeast Structural Genomics
           Consortium Target Ir73
          Length = 246

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLR  EG+ + LF+G +  + +KI    K  
Sbjct: 1   RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKK- 59

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S ++     +  +  R ++ IQKSVE+G+  I P+   +++    
Sbjct: 60  SVKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPL---WSERCGV 116

Query: 123 NMDRVRT---------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P I P   L+    +W            C 
Sbjct: 117 KLDAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQ----DW------------CA 160

Query: 174 SENSLEKL--HAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   KL  H  AH        IP   V +LIG EGG  ++E        F T + LG 
Sbjct: 161 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 219

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA++ +Q   GD
Sbjct: 220 RVLRTETASLAAISALQICFGD 241


>gi|15613913|ref|NP_242216.1| hypothetical protein BH1350 [Bacillus halodurans C-125]
 gi|10173966|dbj|BAB05069.1| BH1350 [Bacillus halodurans C-125]
          Length = 250

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 35/254 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV       T    +GD   ++  V+RM  GD ++  +G            G+++R
Sbjct: 1   MQRYFVPKEQMTDTYVTITGDDVKHIIKVMRMTIGDELICSDGH-----------GRTVR 49

Query: 67  FKVEYQSRSQTKQSDVQYIFS----PI---------KTNRLDYMIQKSVEMG------MG 107
            ++E  + S+     ++ +      PI         K ++LDY++QK  E+G        
Sbjct: 50  CEIEKANDSEVLARVIEPLIPNTELPIRVTIAQALPKGDKLDYIVQKGTELGAQAFWPFS 109

Query: 108 AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
           A R ++    +      +R+      AAEQ     +P I  P     LL+      + + 
Sbjct: 110 ASRSIVKWDEKKGRKKTERLMKIAKEAAEQSYRERIPSIETPLAFSKLLQEISGFTKTIV 169

Query: 168 ADETCGSENSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
           A E    E  L      L+ + H  ++ ++IGPEGG+ +EE + +       P  LGPRI
Sbjct: 170 AYEEEAKEGRLMTFAACLNELHHGDSLLVIIGPEGGFTTEEIDAIQRAGGA-PAGLGPRI 228

Query: 224 LRSDTAAVAAMALV 237
           LR++TA++ A+A +
Sbjct: 229 LRTETASLYALAAI 242


>gi|113461711|ref|YP_719780.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 129PT]
 gi|112823754|gb|ABI25843.1| 16S rRNA m(3)U-1498 methyltransferase [Haemophilus somnus 129PT]
          Length = 245

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 45/243 (18%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM+ G+ I LF+G +  + + I+   K    +V   SR    +    +
Sbjct: 21  SDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA-IEVNILSRQLDNRESPLF 79

Query: 85  I-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132
           I    +  +  R+++ IQKSVE+G+  I P+   +++     +D+ R            I
Sbjct: 80  IHLGQVISRGERMEFTIQKSVELGVNIITPL---WSERCGVKLDKDRMEKKIQQWQKIAI 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH---------- 182
           SA EQC    +P I P   L+    +W            C  ++   KL+          
Sbjct: 137 SACEQCGRNIVPEIRPLMKLQ----DW------------CAEQDGTLKLNLHPRAKYTIR 180

Query: 183 AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +  IP   V +LIGPEGG  ++E     +  F T + LG R+LR++TAA++A+  +Q  
Sbjct: 181 TLPEIPPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETAALSAITALQVC 239

Query: 241 CGD 243
            GD
Sbjct: 240 FGD 242


>gi|313637806|gb|EFS03151.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri
           FSL S4-171]
          Length = 255

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKS 64
           ++R F+D  +  + +  + +G+ +H++  V+RMKEGD + ++F          IS   + 
Sbjct: 1   MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYT 117
           +   V+      T+      I S + K ++L+Y+IQKS E+G        A R V+    
Sbjct: 61  VILNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GS 174
           +     +DR++     AAEQ     +P ++   +L E LL N   +  +V  +E+   G 
Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180

Query: 175 ENSLEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + +L  L   A +PN ++L+  GPEGG   +E   L  L  V    LGPRILR++TA + 
Sbjct: 181 DRTLASLFKEA-VPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLY 238

Query: 233 AMA 235
            ++
Sbjct: 239 VLS 241


>gi|326319528|ref|YP_004237200.1| ribosomal RNA small subunit methyltransferase E [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323376364|gb|ADX48633.1| Ribosomal RNA small subunit methyltransferase E [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 240

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 15/214 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
            VLR++ GD I LF+G+ GE+ + ++ +G+S +   V      + +     ++   +  N
Sbjct: 29  QVLRLQPGDAITLFDGRGGEYAATVARMGRSDVEVLVGAHDPVEREAGRSVHLVVGMPAN 88

Query: 93  -RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            R+D++++K+ E+G+  I+PV    +      +         +    +A EQC    +P 
Sbjct: 89  ERMDWLVEKATELGVARIQPVAAARSVLKLSGERALKRQAHWQAIAAAACEQCGRNRVPQ 148

Query: 146 IYPPTTLE--FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           +  P  L     L       ++V +      E S     A A    V +L GPEGG    
Sbjct: 149 VEAPVPLADWLRLPPAPDAARLVLSLR----EGSRPLHDAAASAACVQVLHGPEGGLAPH 204

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E++      F+ P SLGPR+LR++TA+VAA++L+
Sbjct: 205 EEDLALERGFL-PASLGPRVLRAETASVAALSLL 237


>gi|167622641|ref|YP_001672935.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella halifaxensis
           HAW-EB4]
 gi|167352663|gb|ABZ75276.1| protein of unknown function DUF558 [Shewanella halifaxensis
           HAW-EB4]
          Length = 243

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 20/246 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67
           R++ +  L I        +   ++  VLRM  G+ + LFNG   ++L++I S   K++  
Sbjct: 5   RIYQESSLVIGQAVALDDEAAGHVGRVLRMSVGEQVSLFNGDGNDYLAEIISASKKNVEV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
           KV     +   +S +      +  + +R+D+ IQKSVE+G+  I P+ +         + 
Sbjct: 65  KV-LSCEANNSESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   +SA EQ     +P I P   L           ++          N L 
Sbjct: 124 LEKKIQQWQKIVVSACEQSGRSVVPVIRPAMQLSDWCAEPSDAVKLNLHPRASHGVNGLT 183

Query: 180 KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  +PN  V ++IGPEGG  + E        F T + LGPR+LR++TAA+  ++ +
Sbjct: 184 -------LPNNRVRLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|148657147|ref|YP_001277352.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus sp. RS-1]
 gi|148569257|gb|ABQ91402.1| protein of unknown function DUF558 [Roseiflexus sp. RS-1]
          Length = 260

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 15/247 (6%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           I S+  R FVD P  +   GKA     +  H LA VLR+  GD I+L +G+  ++   + 
Sbjct: 9   IRSNTYRFFVD-PSALDG-GKARLFDPELGHQLADVLRLGRGDRIILLDGEGWQYTVSLE 66

Query: 60  YVGK--SIRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            V +  ++   +E +  +  +      I+ P I+T R ++ +QK VE+G     P     
Sbjct: 67  AVDRRGTVNGAIEAREAAGGEPRINLTIYLPLIRTERFEWALQKGVELGAATFVPTTCAR 126

Query: 117 TQN---THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
           + +       + R R     AAEQ     LP + P          WD +   +   E   
Sbjct: 127 SIDIAPDERKLTRWRRIIREAAEQSRRGRLPRLTPAIPFAEACAQWDSSDPALLLWEGTD 186

Query: 174 S---ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +    ++L  L       ++A+  GPEGG   +E++       ++ +SLGPR LR++TA 
Sbjct: 187 ATPLAHALRILQQHTSPTSLALFSGPEGGLTDDERQCAGRHGIMS-VSLGPRTLRAETAP 245

Query: 231 VAAMALV 237
           +AA A++
Sbjct: 246 IAATAII 252


>gi|307730990|ref|YP_003908214.1| hypothetical protein BC1003_2971 [Burkholderia sp. CCGE1003]
 gi|307585525|gb|ADN58923.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1003]
          Length = 246

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 23/226 (10%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV----EYQSRSQTKQSDVQYIFSPI 89
           VLR++ GD+I+LFNG+ GE+ +++  + + +I  KV    + +     + S  Q I S  
Sbjct: 28  VLRLQVGDSIVLFNGEGGEYSAELVTIERRAITVKVREFRDIEVEPPYRLSLAQGIAS-- 85

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT------ISAAEQCDILTL 143
             +++D++I+K+VE+G  +  P+ T  +         +R +T       ++ EQC    L
Sbjct: 86  -GDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGERALRRHTHWEGIVRASCEQCGRNRL 144

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADE-----TCGSENSLEKLHAIAHIPNVAILIGPEG 198
           P + P   +   L       ++  ADE     +  +      L   A    V +L+GPEG
Sbjct: 145 PEVMPVREIATWL---GAMPRLPAADELRILLSPRASIQFSALPTTAPKGPVTVLVGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           G+ + E+       F   + LGPR+LR++TA +A ++ + A+ G W
Sbjct: 202 GFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGIAVLSALAAMWGGW 246


>gi|52141192|ref|YP_085637.1| hypothetical protein BCZK4058 [Bacillus cereus E33L]
 gi|51974661|gb|AAU16211.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 249

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NG+     + +I+  ++ 
Sbjct: 1   MQRYFVEEKHVNETSIRIVGDDVHHIARVMRMSVGDHIYCCVNGRTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|300718242|ref|YP_003743045.1| hypothetical protein [Erwinia billingiae Eb661]
 gi|299064078|emb|CAX61198.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 243

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 22/229 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           +  +++  VLRM  G  + LF+G +  + ++I    K S+R  +  +SR  +++S +   
Sbjct: 23  EAANHVGRVLRMGAGQALELFDGSNLTFAAEIVQADKKSVRVSL-GESREDSRESPLHLH 81

Query: 86  FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISA 134
              +  +  ++++ IQK+VE+G+  I P+   +++     +D  R            I+A
Sbjct: 82  LGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGVKLDAERLAKKHQQWQKIVIAA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC   ++P +     LE      D   ++        S N+L        +  V +LI
Sbjct: 139 CEQCGRNSVPEVREAMMLERWSAEQDDGLKLNLHPRASQSINTLP-----LPVERVRLLI 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 194 GPEGGLTADEISMTAQYGF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|222529537|ref|YP_002573419.1| hypothetical protein Athe_1548 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456384|gb|ACM60646.1| protein of unknown function DUF558 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 243

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  +++  VLR +EGD I L +G + ++ S+I  + K  R K+  +S++   +  ++ IF
Sbjct: 22  EDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKD-RIKLLIESKTLNDRESIKNIF 79

Query: 87  ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138
                IK  ++D+++QK+ E+G+  I PV+++      ++     ++R R     A +QC
Sbjct: 80  LFQCIIKNQKMDFIVQKATELGVKTIVPVVSKRVVIDISEKQEKKVERWRKIAQEAQKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P I  P  +  + + +     I+F      SE S  +    +   N+ ILIGPEG
Sbjct: 140 LRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS--EWCISSDYNNIGILIGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE E L +   V  +SLG RILRS+TA++AA++++    G+
Sbjct: 198 GFEEEEIEELKTFKNVQVISLGKRILRSETASIAALSILMHEVGE 242


>gi|119492311|ref|ZP_01623658.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106]
 gi|119453196|gb|EAW34363.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106]
          Length = 259

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
            L+RL +            + +Q HYL  VLR+++GD  ++ +G+   WL+++  +    
Sbjct: 3   QLQRLAIALAQISNRHIDLTAEQQHYLGRVLRLRQGDRFIVIDGRGHWWLAQLQVMLPAP 62

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
           S   K+      Q +      ++  +     D +++ S E+G+  I PVI++ T  + + 
Sbjct: 63  SPHAKILEAISVQNELPIAVKLWVSLPKTGFDDLVRYSTELGVSEIVPVISQRTVLKPSS 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEK 180
             ++R R     AAEQ +   +P +  P +    + ++ D +         C +   L  
Sbjct: 123 QKVERWRRIIREAAEQSERQIIPTLVDPISFANAIADFPDFSLAATSQPYLCLARGDLPH 182

Query: 181 LH-----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L+       +   ++ +  GPEGG+ S E E   +  F   +SLG RILR+ TA V A++
Sbjct: 183 LYDCMSSTQSTCDSITLATGPEGGWTSAEVEMAIASGF-QAVSLGRRILRAVTAPVVALS 241

Query: 236 LVQAI 240
            V AI
Sbjct: 242 YVSAI 246


>gi|313680577|ref|YP_004058316.1| hypothetical protein Ocepr_1690 [Oceanithermus profundus DSM 14977]
 gi|313153292|gb|ADR37143.1| protein of unknown function DUF558 [Oceanithermus profundus DSM
           14977]
          Length = 233

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 13/210 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+L HVLR++ G  +++F+G   E  +++++ G         + R+  ++  +  
Sbjct: 18  AGGEAHHLLHVLRVRPGREVVVFDGAGLEAEARVTHAGGGAVRLAAGEPRAVRREPPLAP 77

Query: 85  IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCD 139
           +   + +K ++L  +++   E+G+    P++T  +   +     ++R+R   + AA+Q  
Sbjct: 78  VLYVALLKGDKLADVVRAGSELGVVRFVPLVTERSVPREMGRAKLERLRRIAVEAAKQSG 137

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP + PP  L   L+  D            G+  +L ++ A       A+  GPEGG
Sbjct: 138 RSRLPEVAPPRALAA-LEPVDFGLVA-----HPGAARTLAEV-AWPEAGEAALASGPEGG 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +   E   L  L F  P+ LGPRILR++TA
Sbjct: 191 FTEAEVAHLAGLGF-APVYLGPRILRAETA 219


>gi|15603733|ref|NP_246807.1| hypothetical protein PM1868 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722296|gb|AAK03952.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 244

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQ 83
           S D  +++  VLRM+ GD ++LF+G +  + ++I+ + K    +V+  Q +   ++S ++
Sbjct: 21  SEDAANHVGRVLRMQAGDKLVLFDGSNHVYDAQITQISKK-HVEVDILQHQWDDRESPLK 79

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISA 134
                +  +  R+++ IQKSVE+G+  I P+ +        + DR+       +   ++A
Sbjct: 80  IHLGQVISRGERMEFTIQKSVELGVHVITPLWSERC-GVKLDADRLEKKIQQWQKIAVAA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   L+      D   ++        S  +L  + A      V +LI
Sbjct: 139 CEQCGRNVVPEIRPMMKLQDWCAEKDGALKLNLHPRAQYSIRTLPDIPA----AGVRLLI 194

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G EGG  ++E        F+  L LG R+LR++TA++AA+  +Q   GD
Sbjct: 195 GSEGGLSAQEIAQTEQQDFIEVL-LGKRVLRTETASLAAITALQICFGD 242


>gi|283796176|ref|ZP_06345329.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1]
 gi|291076395|gb|EFE13759.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1]
 gi|295115547|emb|CBL36394.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium
           SM4/1]
          Length = 247

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 18/226 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ +L+ NG+D ++L ++S +    +  ++  +    T+     
Sbjct: 19  TGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEVEAEIIREKEETTELPARV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            +F  + K ++++ +IQK+VE+G   I PV ++        +     + R    + SAA+
Sbjct: 79  CLFQGLPKGDKMELIIQKAVELGAYQIIPVASKRAVVKLDKKKEEAKLRRWNAISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEF-----LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           Q     +P I P   +EF      +  +D  C I +  E+ G E   + +        +A
Sbjct: 139 QSKRRIIPQIAP--VMEFREALSAVSGFDLAC-IPYECES-GMEAVRKFVGQADAGQRIA 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + IGPEGG+   E E       V P+SLG RILR++TA +  ++++
Sbjct: 195 VFIGPEGGFEEAEVEAAVQ-AGVVPVSLGKRILRTETAGLCMLSVL 239


>gi|40889966|pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
           Hi0303, Pfam Duf558
 gi|40889967|pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
           Hi0303, Pfam Duf558
          Length = 257

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 45/262 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLR  EG+ + LF+G +  + +KI    K  
Sbjct: 4   RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKK- 62

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             KVE   R    K+S ++     +  +  R ++ IQKSVE+G+  I P+   +++    
Sbjct: 63  SVKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPL---WSERCGV 119

Query: 123 NMDRVRT---------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P I P   L+    +W            C 
Sbjct: 120 KLDAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQ----DW------------CA 163

Query: 174 SENSLEKL--HAIAH--------IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
             +   KL  H  AH        IP   V +LIG EGG  ++E        F T + LG 
Sbjct: 164 ENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGK 222

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR++TA++AA++ +Q   GD
Sbjct: 223 RVLRTETASLAAISALQICFGD 244


>gi|229577456|ref|YP_001126527.2| 16S ribosomal RNA methyltransferase RsmE [Geobacillus
           thermodenitrificans NG80-2]
          Length = 258

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 15/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           SGD  H+++ V+RMK GD I          + +I  +          Q + + ++  V+ 
Sbjct: 19  SGDDAHHISRVMRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K  + + +IQK  E+G        A R V+    +     ++R +     AAE
Sbjct: 79  YIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET---CGSENSLEKLHAIAHIPNVAIL 193
           Q +   LP +  P +L+ L+   +     +FA E     G   SL  L A    P  ++L
Sbjct: 139 QAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQ-PGSSLL 197

Query: 194 --IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              GPEGG+  EE E L    F+ P SLGPRILR++TA +  +A
Sbjct: 198 AVFGPEGGFSREEAEQLKQSGFL-PCSLGPRILRTETAPLYLLA 240


>gi|329118281|ref|ZP_08246991.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465702|gb|EGF11977.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 239

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F D  LC         +   +L HVLR + G+ I LFNG   E+ + ++ V K   
Sbjct: 1   MPRFFADAALCRGATVALPDNVVRHL-HVLRCRAGEKIALFNGNGREYAAVLARVDKRAA 59

Query: 67  FKVEYQSRSQTKQSD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                  R    +S   V  + +     R+D+ +QKSVE+G+ A+ PVI+  +      +
Sbjct: 60  MAEILDERPSENESPLAVTLVQAVSAGERMDFTLQKSVELGVAAVIPVISSRSVVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P      L              +   S N+ 
Sbjct: 120 RAQKRVVRWQEIVVSACEQSGRCVVPEVRP-----LLPYAQALAALPDADAKLLMSLNNR 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L  I    +V ++ GPEGG+  EE+E   +  F + L+LG R+LR++TAA+AA+A +Q
Sbjct: 175 QSLRGIPPPQSVILMAGPEGGWTHEEEEAAFAAGF-SGLTLGRRVLRTETAALAALAAMQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 TLWGDF 239


>gi|118479479|ref|YP_896630.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis
           str. Al Hakam]
 gi|225866292|ref|YP_002751670.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102]
 gi|229186551|ref|ZP_04313712.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1]
 gi|118418704|gb|ABK87123.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225790106|gb|ACO30323.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102]
 gi|228596810|gb|EEK54469.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1]
          Length = 249

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NG+     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGRTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      +       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|197116640|ref|YP_002137067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter bemidjiensis
           Bem]
 gi|197086000|gb|ACH37271.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 246

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 19/232 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSD 81
           +G+ Y ++A VLR+K+G  + L    D      +  VG    ++R        ++     
Sbjct: 19  TGELYRHMARVLRIKQGSEVELIEDGDSRHRGTVEEVGAKSLTVRISASAAPAAEEPGLR 78

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135
           +  +    K  +LD ++QK  E+G+       A R V+      +   + R       AA
Sbjct: 79  ITLLQGMPKGEKLDLILQKCTELGVAEVVAFDAARSVVKLRGDRSATRLARYEKIVREAA 138

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH----AIAHIPNVA 191
            Q    + P +    TL  +L +  H  +++  +   G E +   LH    A     +VA
Sbjct: 139 RQSGRRSAPKVALGGTLADVLADSHHEVKLLLYE---GEEKT--TLHGCFGAFEAPESVA 193

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +++GPEGG   EE     +  F TP++LG RILR++TA +A ++++Q   GD
Sbjct: 194 VVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSILQFHWGD 244


>gi|260775560|ref|ZP_05884457.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608741|gb|EEX34906.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 210

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 106/221 (47%), Gaps = 28/221 (12%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           MK G  +LLF+G   E+ + I  V K     +I  +VE  S S       Q I    +  
Sbjct: 1   MKVGQEVLLFDGYGAEFPAVIEEVSKKSVTVNITERVERSSESPLDLHLGQVIS---RGE 57

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTL 143
           ++++ IQKSVE+G+  I P+I+   +     +D+ R            ISA EQ     +
Sbjct: 58  KMEFTIQKSVELGVNTITPLIS---ERCGVKLDQKRFEKKLAQWQKVAISACEQSGRNIV 114

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P I P   L E+  +++D   ++        S N+L      A +  V +LIGPEGG  +
Sbjct: 115 PQIRPIMQLDEWCAEDYD-GLKLNLHPRAKYSINTLP-----APVEKVRLLIGPEGGLSA 168

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EE E      F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 169 EEIEKTREYQFEETL-LGPRVLRTETAALTAITALQVRFGD 208


>gi|253990749|ref|YP_003042105.1| 16S ribosomal RNA methyltransferase RsmE [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639080|emb|CAR67692.1| Hypothetical protein yggJ [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782199|emb|CAQ85363.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 270

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S +  +++  VLRM  G  + LF+G +  + ++I+   K S++  +   + +  +     
Sbjct: 48  SDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAEITEASKKSVKVHISNSTLADNESPLNL 107

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAA 135
           ++   I +  ++++ IQKSVE+G+  I P+I+        + DR+       +   I+A 
Sbjct: 108 HLGQVISRGEKMEFTIQKSVELGVNTITPLISERC-GVKLDGDRLAKKLQQWQKIAIAAC 166

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P   LE      D + ++        S N+L        +  V +LIG
Sbjct: 167 EQCCRNRIPEIRPVMQLEQWCAENDGSLKLNLHPRANQSINTLP-----LPVEKVRLLIG 221

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  ++E     +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 222 PEGGLSTDEIAMTANHQF-TDILLGPRVLRTETTALTAITALQVRFGD 268


>gi|154482579|ref|ZP_02025027.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC
           27560]
 gi|149736604|gb|EDM52490.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC
           27560]
          Length = 245

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 16/224 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK+G+ IL+ +G+D E++  I  +  + +R K+E  +    +      
Sbjct: 20  GSDVNHIKNVLRMKKGETILISDGEDREYVCTIDELENEQVRAKIEDVNGVAKELPIKVT 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ +IQK +E+G   I PV T+        +       R  +   SAA+Q
Sbjct: 80  LFQALPKGDKMETVIQKMIELGAYEIVPVFTKRCIVKLDNKKAVSKTKRWNSIAESAAKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILI 194
                +P +  P T +  LK  +    ++   E   +EN       ++ I     V I I
Sbjct: 140 SKRGIIPKVSMPVTYKEALKMAEAMDMVLIPYEN--AENMAHTRQVVSQIKTGMTVGIFI 197

Query: 195 GPEGGYHSEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  EE E  +++  +   ++LG RILR++TA +A M+++
Sbjct: 198 GPEGGFAEEEVEQAINTGAY--DITLGKRILRTETAGMALMSVL 239


>gi|187477367|ref|YP_785391.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella avium 197N]
 gi|115421953|emb|CAJ48473.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 244

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F D PL    +        H+   VLR+++G  I+LF+G+ GE+ +++   GK+  
Sbjct: 3   LPRFFCDTPLAAGQRLALPEALAHHAIRVLRLRDGAVIVLFDGRGGEYPARLEIEGKTGY 62

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
            ++ E+ +R       +         +++D++I+K+VE+G  A+      R V+      
Sbjct: 63  AQLAEHVAREAELPGRITLAQGLPSGDKMDWIIEKAVELGAAAVAPIAAQRSVLQLSGPR 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   R    +AAEQC    L  +  P++L   L       +++   E     + L 
Sbjct: 123 LEKRLSHWRRIAQAAAEQCGRNRLTQVSAPSSLREWLAQPAQGARVMCHPEAA---DDLP 179

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              A    P  + +L+GPEGG+ SEE+        V  + LG R+LR++TA +A +A V 
Sbjct: 180 GWLASQPAPEALTLLVGPEGGW-SEEELAAARAAGVASVRLGSRVLRTETAGLALIASVT 238

Query: 239 AICG 242
           A+ G
Sbjct: 239 ALLG 242


>gi|301154799|emb|CBW14262.1| predicted protein [Haemophilus parainfluenzae T3T1]
          Length = 244

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 23/243 (9%)

Query: 15  PLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-Y 71
           P  +K Q   + S D  +++  VLRM EG+ I LF+G +  + +KI    K    KVE  
Sbjct: 9   PKSLKNQSTCQLSEDAANHVGRVLRMTEGEQIELFDGSNHIYPAKIIEASKKA-VKVEIL 67

Query: 72  QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR- 128
                 K+S++      +  + +R+++ IQKSVE+G+  I P+   +++     +D  R 
Sbjct: 68  GCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPL---WSERCGVKLDGERM 124

Query: 129 --------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                      I+A EQC    +P I P   L+      D   ++        ++ S++ 
Sbjct: 125 DKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGALKLNLHPR---AQYSIKT 181

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L +I     V +LIG EGG   +E        F T + LG R+LR++TA++AA++ +Q  
Sbjct: 182 LPSIPK-EGVRLLIGSEGGLSPQEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQIC 239

Query: 241 CGD 243
            GD
Sbjct: 240 FGD 242


>gi|282600332|ref|ZP_05973903.2| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541]
 gi|282565567|gb|EFB71102.1| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541]
          Length = 210

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95
           M  G  I LF+G +  + ++I+   K   F     S    ++S +      +  +  +++
Sbjct: 1   MSVGQKIELFDGSNHTFSAEITEATKKSVFVHIESSTLDDRESPLDIHLGQVMSRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKSVE+G+  I P+++         +     + + +   I+A EQC    +P I P 
Sbjct: 61  FTIQKSVELGVNTITPLLSERCGVRLDGERLEKKLQQWQKIAIAACEQCGRNRIPEIRPV 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            +LE      D   +I        S N+L      A + +V +LIGPEGG  +EE     
Sbjct: 121 QSLEAWCAENDGAFKINLHPRASHSVNTLP-----ADLKHVRLLIGPEGGLSTEEIAMTA 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 NYQF-TDILLGPRVLRTETTALTAITALQVRLGD 208


>gi|332662267|ref|YP_004445055.1| ribosomal RNA small subunit methyltransferase E [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331081|gb|AEE48182.1| Ribosomal RNA small subunit methyltransferase E [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 285

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQ-SRSQTKQSDVQYIFSPIKT 91
            VLR   G  + + +GK   + +++  +GK + R K+  Q  ++Q K   +    +P K 
Sbjct: 76  QVLRYTPGRILSVVDGKGNWYEAELLELGKKLARAKINTQKQQTQRKPYHLHVAIAPTKN 135

Query: 92  -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             RL++ ++K+ E+G+  I P++ R+++ T    DR+   T+SA +Q     LP + P  
Sbjct: 136 IERLEWFLEKATEIGVDEITPILCRHSERTQVRQDRLEKITLSAMKQSLKTFLPRLNPLQ 195

Query: 151 TLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            L+ FL    + + Q   A  T      L++ +      +V I+IGPEG +  EE E   
Sbjct: 196 PLKTFLPAQANFSGQKCIAWITDPPAALLQQTYQRGQ--SVMIVIGPEGDFAPEEIELAT 253

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
              F  P+SLG   LR++TA V A+  ++ + G
Sbjct: 254 QCNFA-PVSLGQSRLRTETAGVVAVHTIELMNG 285


>gi|302385307|ref|YP_003821129.1| protein of unknown function DUF558 [Clostridium saccharolyticum
           WM1]
 gi|302195935|gb|ADL03506.1| protein of unknown function DUF558 [Clostridium saccharolyticum
           WM1]
          Length = 245

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRM  G+ IL+ NG D ++L +I  V  + +  K+       T+     Y
Sbjct: 20  GPDVNHIKNVLRMGAGEEILVSNGVDKDYLCQILDVASAEVTAKILSVEEGGTELPARLY 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ +IQK+VE+G+  I PV T+        +     + R R  + SAA+Q
Sbjct: 80  LFQGLPKGDKMELIIQKAVELGVYQIIPVETKRAVVRLDQKKEESKLRRWRAVSESAAKQ 139

Query: 138 CDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
              L +P +    T  E L    + +  ++  +       + E L +I    +V I IGP
Sbjct: 140 SGRLIIPEVAGVMTFPEALAFGKELDMIVIPFEHAKDMAKTKEILSSIRPGMSVGIFIGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+   E +    L     ++LG RILR++TA +A ++++
Sbjct: 200 EGGFEDSEMDLAERLG-AKQITLGKRILRTETAGLAIVSVL 239


>gi|218246145|ref|YP_002371516.1| hypothetical protein PCC8801_1295 [Cyanothece sp. PCC 8801]
 gi|218166623|gb|ACK65360.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8801]
          Length = 239

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 16/239 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL ++    +    + + +Q HYL  VLR+K GD  +  +G+   +L+++      I   
Sbjct: 3   RLVIESIQTLDQSVRLTPEQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEEDSAKI--- 59

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           +E           +  + +  K N  + +++   E+G+  + P+I++ T  + + + ++R
Sbjct: 60  LENLKECTELPLAITLMVALPKGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKLER 119

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     A EQ +   +P I  P      L+N D   +I      C +       H + H
Sbjct: 120 WRKIATEAGEQSERQLIPTIVDPIVFNEALRNID---KIPSDRYICVTRKKAH--HLLTH 174

Query: 187 IPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +   +     I  G EGG+  EE ET  +  F  P++LGPRILR+ TA + A++L  ++
Sbjct: 175 LSETSQNPLVIATGCEGGWTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSLAVSV 232


>gi|302871657|ref|YP_003840293.1| hypothetical protein COB47_1006 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574516|gb|ADL42307.1| protein of unknown function DUF558 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 243

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  +++  VLR +EGD I L +G + ++ S+I  V K  + K+  +S++   +   + IF
Sbjct: 22  EDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKD-KIKLLIESKTLNDRESTKNIF 79

Query: 87  ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138
                IK  ++D+++QK+ E+G+  I PV+++      ++     +DR R     A +QC
Sbjct: 80  LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDVSEKEEKKLDRWRKIAQEAQKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P I  P  +  + + +     I+F       E S   L +  +  N+ ILIGPEG
Sbjct: 140 LRPKPPLIEMPIRISEIKEKYLDKLDILFIPYEKELETSRWSLSS--NYNNIGILIGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE E L +   V  +SLG RILRS+TA++AA++++    G+
Sbjct: 198 GFEEEEVEELKTFKNVQVISLGKRILRSETASIAALSILMHELGE 242


>gi|291166400|gb|EFE28446.1| RNA methyltransferase, RsmE family [Filifactor alocis ATCC 35896]
          Length = 247

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 32/252 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAH---VLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R +VD P     +  A  D    + H   VLR   GD + +F+   GE+++KIS +  
Sbjct: 1   MDRFYVDHPF----KEHAFLDDIEEIKHITKVLRFSVGDYVEIFDSVQGEYIAKISAIDS 56

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
           K I F ++ +   ++K +    ++  I K +R++++IQKS E+G+  I PV  + +    
Sbjct: 57  KRIYFDIQ-KELPKSKSNIFVTLYQGIAKGHRMEFLIQKSTELGVDTIIPVRFQRSVAKL 115

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF------LLKNWDHNCQIVFADE- 170
           +     + R     + A++QC    +  +     ++F      LLKN   +  + F +E 
Sbjct: 116 EKDDKKIQRWNKICLEASKQCKRNKISCV--KNAIDFSELSSELLKN---DLNLFFYEEE 170

Query: 171 ---TCGS--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              T  S  +  L ++  + +  ++ I++GPEGG   +EK+ L S   +  LSLG RILR
Sbjct: 171 HNLTLKSYLKEQLNRIKVLQNGVSIGIIVGPEGGITEQEKDILVS-EGIPSLSLGKRILR 229

Query: 226 SDTAAVAAMALV 237
           ++T +VA ++++
Sbjct: 230 TETVSVAVLSML 241


>gi|293400698|ref|ZP_06644843.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305724|gb|EFE46968.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 258

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 12/241 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+  PL +    +   +Q H++ HV+RMK  + I L +GK   + + + +    + 
Sbjct: 1   MQQYFLHKPLQVHDLVEMEPEQAHHIQHVMRMKPDEIIRLADGKGHMYYAHVVFRDHKVF 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRY----TQNT 120
             V+ +    T+ + V  I +   IK  + D+++QKS E+G+  I P  +      T++ 
Sbjct: 61  ACVDEEMEDHTR-TPVDMILAQGLIKKEKWDFLLQKSAELGVQRIIPFTSSRTVVKTKDE 119

Query: 121 HYNMDRVRTYTI--SAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIV-FADETCGSEN 176
             +  R+R   I   A EQC   TL  +  P +   L+K + D + +++ +      S +
Sbjct: 120 KVDKKRLRWNKILQEACEQCKRSTLVALDSPKSFAELIKASEDADVKLIAYERADVKSAH 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L        V I++G EGG+  +E   L  + F   +SLG RILR++TAA++ +A 
Sbjct: 180 VKEVLQKYPAPHKVFIVVGCEGGFSEDEVIQLEEVGF-HRVSLGARILRAETAALSLLAC 238

Query: 237 V 237
           +
Sbjct: 239 I 239


>gi|220932114|ref|YP_002509022.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H
           168]
 gi|219993424|gb|ACL70027.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H
           168]
          Length = 249

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 120/236 (50%), Gaps = 25/236 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV------GKSIRFKVEYQSRSQTK 78
            G+ Y+++ + LR+  GD +++  G   ++++ I  +      GK I+   EY++R++  
Sbjct: 19  KGNDYNHIVNSLRLNPGDKLIVCPGNCRDYVATIEEIKENQITGKIIK---EYKNRNEPS 75

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
            +       P K  ++D +IQK+ E+G+ +I P+ T  T      +      DR +    
Sbjct: 76  LNITLAQALP-KKRKMDLVIQKATEIGVRSIIPLKTTRTIVRLNKKKERKKTDRWQKIAK 134

Query: 133 SAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAIAHI 187
            AA+Q     I T+  +Y    L     N+D    I+  +E  G   +N L  ++ ++ I
Sbjct: 135 EAAKQSGRGRIPTVERVYSLKELTQFKSNFD--LIIIPWEEEQGKNLKNVLSTVN-VSEI 191

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             + ++IGPEGG+  EE + +  L  + P++LGPRILR++TA +  + ++    GD
Sbjct: 192 SKILVIIGPEGGFPPEEIKFIEQLGGI-PITLGPRILRTETAGLVVLTMLLYESGD 246


>gi|309388922|gb|ADO76802.1| protein of unknown function DUF558 [Halanaerobium praevalens DSM
           2228]
          Length = 253

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67
           R F+D    I  +   SG+ Y++L + LR+  GD ++L +G   +  ++I +Y  +S   
Sbjct: 3   RFFIDQSTEIGKKVFISGNDYNHLKNSLRLDLGDRVILSDGNGFDLEAEIITYQTESAEL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH 121
           K+  + +S+ +     ++   + K +++D +++K+ E+G   + P+     I +Y Q   
Sbjct: 63  KILTKEKSKVEPKIKVWLAQGLPKKSKMDLIVEKATEIGFSGLIPLESKRTIVKYNQKKK 122

Query: 122 YNM-DRVRTYTISAAEQCDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENS 177
                R +    +AA+Q     +P I        ++   + +D+   +++ DE   +  S
Sbjct: 123 AKKRSRWQRVAEAAAKQSGRAVIPKIKNFCNSNNIKSFKEKFDY-VLVLWEDEKKTTIKS 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             K + IA    + ++IGPEGG+   E            ++LGPRILR++TA + A+  +
Sbjct: 182 FFKENEIAAEAKILLIIGPEGGFSEAEVNRFEQKLEAEIITLGPRILRTETAGIVALTAI 241

Query: 238 QAICGD 243
            +  G+
Sbjct: 242 LSEKGE 247


>gi|260913267|ref|ZP_05919749.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325]
 gi|260632854|gb|EEX51023.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325]
          Length = 244

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 17/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQ 83
           S D  +++  VLRM+ G+ + LF+G +  + + I+ V K     VE  S+    ++S ++
Sbjct: 21  SEDAANHVGRVLRMQVGEQLELFDGSNHTYAATITQVSKKA-VTVEILSQQLDDRESHLK 79

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISA 134
                +  +  R+++ IQKSVE+G+  I P+ +        + DR+       +   I+A
Sbjct: 80  IHLGQVISRGERMEFTIQKSVELGVSVITPLWSERC-GVKLDADRMEKKIQQWQKIAIAA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   L+      D   ++    +   ++ S+  L AI     V +LI
Sbjct: 139 CEQCGRNVIPEIRPLMRLQDWCAEKDGALKLNLHPK---AQYSIRTLPAIPE-EGVRLLI 194

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G EGG   +E        F T + LG R+LR++TA++AA++ +Q   GD
Sbjct: 195 GSEGGLSPQEISQTEQQGF-TEVLLGKRVLRTETASLAAISALQICFGD 242


>gi|189219856|ref|YP_001940497.1| hypothetical protein Minf_1845 [Methylacidiphilum infernorum V4]
 gi|189186714|gb|ACD83899.1| Uncharacterized conserved protein [Methylacidiphilum infernorum V4]
          Length = 217

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 11/206 (5%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           +R K GD I +F+GK   W +KI  +      +    E +  S +K+  +  I S +K  
Sbjct: 1   MRHKIGDLIEVFDGKGSSWEAKIEKIENHQVFVSLLREIKEDSPSKKPLLVLIQSVLKNK 60

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            + +++QK  E+G+  I PVI++ +     +       +     I+AA+Q     LP ++
Sbjct: 61  AMHWLLQKVTEIGVDRIIPVISKRSLSAVEEGQQLKEKKWNEILIAAAKQSHRRKLPELF 120

Query: 148 PPTTLEFLLKN-WDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
             + L   LK  +  + ++V F  +   S   + + ++  ++ +V ILIGPEG +  EEK
Sbjct: 121 KISLLADALKEGFPSSLKLVAFLGKEARSLKEVMQCYSSRNVSSVVILIGPEGDFTGEEK 180

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAV 231
             + +  F+ P+SLG ++LRS+TAA+
Sbjct: 181 NMVLNQGFI-PVSLGNQVLRSETAAL 205


>gi|254447345|ref|ZP_05060811.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium
           HTCC5015]
 gi|198262688|gb|EDY86967.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium
           HTCC5015]
          Length = 245

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 110/245 (44%), Gaps = 16/245 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRF 67
           RL+ D  L +  +        H+L  VLR  +G  +LLFN + D E+ +++    K    
Sbjct: 5   RLYCDQVLNVGDEVTLDAVTSHHLCTVLRAHQGSIVLLFNNREDAEYEAELIKPHKK-NA 63

Query: 68  KVEYQSRSQTKQSDVQYIF---SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THY 122
            V    R +  +    YI       + +R+D+ IQK+ EMG   I PV+   +Q   +  
Sbjct: 64  CVRLTQRVECFRESSLYIHLYQGVSRGDRMDFAIQKATEMGAHEITPVLCERSQIKLSGE 123

Query: 123 NMDRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
             ++ R +     ISA +Q     L  +      +  L   D     +F D    ++ S 
Sbjct: 124 RGEKKRAHWQQIIISACQQSGRCRLAKLNAVQHFQEALLQRDAQSVGLFLD----TQTSQ 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               A+     V + IGPEGG+   E +        + +SLGPRILR++TAA+AA+   Q
Sbjct: 180 SGDAALRQAQRVDLWIGPEGGFDPTEVQAAQDQGLAS-VSLGPRILRTETAAIAALTYCQ 238

Query: 239 AICGD 243
            I GD
Sbjct: 239 LISGD 243


>gi|262193422|ref|YP_003264631.1| hypothetical protein Hoch_0097 [Haliangium ochraceum DSM 14365]
 gi|262076769|gb|ACY12738.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365]
          Length = 250

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 24/235 (10%)

Query: 9   RLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIR 66
           RLFV+ P  ++    +  GD + YL  V R++ GD + LF+G   E  ++++ + G+  +
Sbjct: 4   RLFVE-PASLRAGAVEVCGDDHRYLFRVRRLRVGDAVTLFDGAGREADARVAAIDGERAQ 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
            +V  + R+    S  +    P  IK +R+D+ +QK VE+G+  I PV    +  T   +
Sbjct: 63  LEV-AEPRAVVAPSPCRVSVLPALIKGDRMDFCVQKLVELGVHEIAPV---TSARTVVKL 118

Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCG 173
           D  R             +AA QC+  T+P I     LE  L +        I++A E   
Sbjct: 119 DGARAARRRERFVDIARAAARQCERATVPEIAAIAPLEQALASRAQTPLKLILWARE--- 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               L  + A      V + +GPEGG+  EE E   +  F  P+ LG  +LR++T
Sbjct: 176 RSRMLRDIVAQPLPAGVCVAVGPEGGFAPEEIEAAVAAGF-EPVGLGGHVLRAET 229


>gi|313905332|ref|ZP_07838698.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6]
 gi|313469802|gb|EFR65138.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6]
          Length = 246

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IR 66
           R F      I  +   +GD  +++ +VLRMK+G+ IL+  G + E+   IS + +   + 
Sbjct: 3   RFFTGREQIIDGKVHITGDDVNHIRNVLRMKKGETILISCGDEWEYTCSISELSEDEILA 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
              + Q   +  +S + Y+F  + K+++++ +IQK+VE+G   + PV ++        + 
Sbjct: 63  DVTDAQKPGKELRSKI-YLFQCLPKSDKMETVIQKAVELGAFEVVPVSSKRCIVKLDQKR 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178
               + R      SAA+Q   + +P ++      E L    + + +++  +   G   + 
Sbjct: 122 GKQKVARWNGIAESAAKQAKRMIIPTVHEILGFREALEMAKEMDVKLIPYEMESGMSRTR 181

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E   +I    ++A+LIGPEGG+   E E      F + ++LG RILR++TA +  ++++
Sbjct: 182 EIFSSIEPGQSIAVLIGPEGGFDEAEVELAKEAGF-SSITLGRRILRTETAGMTTLSIL 239


>gi|308272138|emb|CBX28745.1| hypothetical protein N47_L13430 [uncultured Desulfobacterium sp.]
          Length = 259

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 125/250 (50%), Gaps = 20/250 (8%)

Query: 9   RLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           RLF      I +Q  A  G    ++ +VLR+K GD+I LF+    ++ ++I  V  S R 
Sbjct: 2   RLFYIDQSEIASQNPAIKGSDARHIINVLRLKPGDHIELFDESGIKYKARIVAVS-SARV 60

Query: 68  KVEYQSRS-QTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +V    +S QT +S ++ I   S +K  ++D +I++  E+G+    P I+  +      +
Sbjct: 61  EVSVVGQSNQTVESFLEIIVAQSFLKEAKMDNLIRQLTELGITKWIPFISERSVSRPDDK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177
                  R  +    AA+QC       I    + + LL++  + + +I+F +     +N 
Sbjct: 121 RLLNRSKRWESIAKEAAKQCKRAKTTIIEKTVSFKELLESKQEFDLKIIFWE---NEKNL 177

Query: 178 LEKLHAIA----HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L+  +  A     I  + I++GPEGG+   E E      F+T   LGPRILR++TA+V+A
Sbjct: 178 LDIKNLTATHQKDINKILIILGPEGGFTISEIEKAKESGFLTA-GLGPRILRAETASVSA 236

Query: 234 MALVQAICGD 243
             L+Q + GD
Sbjct: 237 CTLIQFLFGD 246


>gi|329896498|ref|ZP_08271556.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC3088]
 gi|328921715|gb|EGG29088.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC3088]
          Length = 216

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 18/219 (8%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTN 92
           VLR+K G  + LFNG    +  ++    K I       +++   +S ++     +  K +
Sbjct: 4   VLRLKTGAPLELFNGDGNNYQCELLDSAKRIATIRVLSAKANPTESSLRSRLGIVVSKGD 63

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-------YTISAAEQCDILTLPF 145
           R+D+++QK+ E+G+  I P +T    +   N +R            +SA EQ     +P 
Sbjct: 64  RMDFVVQKATELGIHEIYP-LTSERCDVKLNAERAEKRQQHWSKVAVSACEQSGRSVIPR 122

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           I P  ++   +   + + + V        ++  E         +VAIL+GPEGG    E 
Sbjct: 123 IAPIQSIHQWISEVNADLKWVLHHRASAEKSPTEA-------QSVAILVGPEGGLSETEV 175

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E      F+ P  LGPR+LR++TA + A++++Q   GD+
Sbjct: 176 ELALQHKFI-PTVLGPRVLRTETAPLVALSVLQQRYGDF 213


>gi|126652831|ref|ZP_01724976.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905]
 gi|126590367|gb|EAZ84487.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905]
          Length = 245

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  +      + SG+   ++  V+RMK+GD I++         +   + G  + 
Sbjct: 1   MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIVVVAQNIAHICTITGFEGDEVV 57

Query: 67  FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119
                ++   ++    +       K ++L+ + QK+ E+GM A++P      ++    + 
Sbjct: 58  VDATGETIPSSELPIQITVACGLPKGDKLELITQKATELGMFALQPFEAERSIVKWDKKK 117

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-- 177
                +R++     AAEQ     +P +Y P T + LL   D    +  ADE         
Sbjct: 118 GAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLHEIDQFDAVFIADEEDAKAEKRT 177

Query: 178 --LEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              +KL  +    + ++ I+ GPEGG   +E E L      T +SLGPRILR++TA + A
Sbjct: 178 RFADKLRLVHDQKLTSMLIIFGPEGGISRKESEALLQAGAQT-MSLGPRILRAETAPLYA 236

Query: 234 MALV 237
           ++ +
Sbjct: 237 LSAI 240


>gi|299065688|emb|CBJ36861.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
           [Ralstonia solanacearum CMR15]
          Length = 249

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 17/251 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R  +D PL   T          ++ HVLR+  GD I LF+G   E+ +++  + +  R
Sbjct: 3   LPRFHIDSPLAPHTTVTLPESVTRHI-HVLRLAVGDEICLFDGSGQEFRARLDAINR--R 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRPVITR---YTQN 119
                 + +    ++ +Y  +  +     +++D++I+K+VE+G+ AI P+ T       +
Sbjct: 60  DATASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLS 119

Query: 120 THYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
               + RV+ +     +A EQC    +P + P   L   L     + +        GS+ 
Sbjct: 120 GERAVKRVQHWQALVQAACEQCGRARVPTVSPVAPLRDWLAAAKASERARVMLSPRGSQP 179

Query: 177 SLE-KLHAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             +  + +   I +  I  LIGPEGG  S ++E L       PL+LG RILR+++AA+ A
Sbjct: 180 LTQWAVQSRGRIGSAGIELLIGPEGGL-SPDEEALAEAAGYLPLTLGRRILRTESAALVA 238

Query: 234 MALVQAICGDW 244
           ++ + A+ G++
Sbjct: 239 VSALHAVLGEF 249


>gi|295097485|emb|CBK86575.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 248

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 18/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80
           S D  +++  VLRM  G  I LF+G +  + ++I+   K S+  KV   E   R      
Sbjct: 26  SDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKSVHVKVLRGEVDDRESPLHI 85

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134
            +  + S  +  ++++ IQKS+E+G+  I P+ +         +  +  + + +   I+A
Sbjct: 86  HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAIAA 143

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQ     +P I P   LE      +   ++        S N+L        +  V +LI
Sbjct: 144 CEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 198

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 199 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 246


>gi|37525153|ref|NP_928497.1| hypothetical protein plu1185 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784579|emb|CAE13479.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 243

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 14/227 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           S +  +++  VLRM  G  + LF+G +  + ++I+   K S++  +     +  +     
Sbjct: 21  SDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAQITEASKKSVKVHISNSELADNESPLNL 80

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           ++   I +  ++++ IQKSVE+G+  I P+I+         +     + + +   I+A E
Sbjct: 81  HLGQVISRGEKMEFTIQKSVELGVNVITPLISERCGVKLDGERLAKKLQQWQKIAIAACE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    +P I P   LE      D + ++        S N+L        +  V +LIGP
Sbjct: 141 QCCRNRVPEIRPVMQLEHWCAENDGSLKLNLHPRASQSINTLP-----LPVEKVRLLIGP 195

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG   +E     +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 196 EGGLSIDEIAMTANYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|317122986|ref|YP_004102989.1| hypothetical protein Tmar_2182 [Thermaerobacter marianensis DSM
           12885]
 gi|315592966|gb|ADU52262.1| protein of unknown function DUF558 [Thermaerobacter marianensis DSM
           12885]
          Length = 252

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 19/249 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           +FVD  L    +     D  H+L  VLR   GD ++  +     WL ++          V
Sbjct: 6   VFVDRELEPGARAPLPADDAHHLLRVLRRGPGDQVVAVSPGGCRWLGQLE---PGTPPHV 62

Query: 70  EYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
             Q R  + +  +         K  +++ +++   E+G+    PV+   +          
Sbjct: 63  VAQERLPSSEPPLHVTLGQGLPKGPKMEEVVRHGTEVGVSRFVPVLAARSVSRPEADAAA 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSL 178
             + R +     AA Q     +P + PP  LE LL     WD        +E+ G    L
Sbjct: 123 RRLQRWQRIAREAARQAQRSAVPQVDPPRPLEGLLAEEGPWDLILMPWEEEESRGLREEL 182

Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E + A+   P     V +L+GPEGG+   E E          ++LGPRILR++TA V   
Sbjct: 183 EAVAAVWGRPAAGRRVLVLVGPEGGWDPAEVEAARRA-GARVVTLGPRILRTETAGVLVA 241

Query: 235 ALVQAICGD 243
            LV  + GD
Sbjct: 242 GLVLHVLGD 250


>gi|126660243|ref|ZP_01731359.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110]
 gi|126618482|gb|EAZ89235.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110]
          Length = 241

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +Q HYL +VLR+KE    ++ +G++  +++KI+     I  ++  Q+       +V  + 
Sbjct: 22  EQKHYLKNVLRLKEDSQFIVVDGQNNTYIAKINDDNGQIIEQLNEQTELPI---NVTLMI 78

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
           +  K    D +I+   E+G+  I PVI++ T  + + + ++R R     A EQ +   +P
Sbjct: 79  ALPKGKGFDEVIRSCTELGINTIIPVISQRTLLKPSSHKLERWRKIVKEATEQSERQLVP 138

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            I  P +    LK      Q  +   T      L          ++ I  G EGG+  +E
Sbjct: 139 NILEPISFSEALKKVKQTNQNYYICVTRKKAKHLLTYLLETTTNSITIATGCEGGWTEKE 198

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
                +  F+ P++LGPRILR+ TA +  ++LV ++   ++
Sbjct: 199 INEAINSGFI-PVTLGPRILRAVTAPLVTLSLVASVTEKYH 238


>gi|154504512|ref|ZP_02041250.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149]
 gi|153794994|gb|EDN77414.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 116/222 (52%), Gaps = 10/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
            G   +++ HVLRMK G+ + + +  + ++L +I   + + +   +  Q  S T+ S   
Sbjct: 19  EGTDVNHIVHVLRMKVGEEVSVHDDVNRKYLCRIEKLLEERVVLSIVEQQESDTELSCPI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K ++++++IQK VE+G+ AI PV T+        +     ++R      SAA+
Sbjct: 79  YLFQGLPKGDKMEWIIQKCVELGVHAIVPVATKRAVVKLDEKKAQKKVNRWNAIAESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P + P    +  L+     + +++  ++  G   + + + +++   +V I IG
Sbjct: 139 QSGRGIVPEVLPVMKWKEALEYARQLDVKMIPYEKAAGINATKQLIASVSFGQSVGIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+   E E    +  V P++LG RILR++TA +  ++++
Sbjct: 199 PEGGFEEAEVEAAKEIGAV-PVTLGRRILRTETAGMTILSIL 239


>gi|147677216|ref|YP_001211431.1| 16S ribosomal RNA methyltransferase RsmE [Pelotomaculum
           thermopropionicum SI]
 gi|146273313|dbj|BAF59062.1| Uncharacterized protein conserved in bacteria [Pelotomaculum
           thermopropionicum SI]
          Length = 249

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G    ++  VLR+  GD + + +G+   + + I   G +  +       +        V
Sbjct: 19  TGPDVVHITRVLRLGRGDCLTVLDGRGRSYEAVIEKAGAAEVVCVAGSVTAAGGLPAVKV 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    + +++D+++QK  E+GM  + P+I R +        +   ++R R   + A++
Sbjct: 79  TLVQGIPRGDKMDFIVQKGTELGMHRLIPLICRRSVVKLEGDKSFRRLERWRRIALEASK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    +P +  P   + +L         +   E    E   + L        V + IGP
Sbjct: 139 QCRRPDVPEVDAPAGWDRVLAGMPPEAAALIPWEEEDGETLKDFLRRSLPKEEVYVFIGP 198

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EGG+   E +   ++  V P++LGPRILR++TA +A + +V    GD
Sbjct: 199 EGGFDPGEVDKARAV-GVRPVTLGPRILRTETAGLAVLVMVLYQWGD 244


>gi|300703042|ref|YP_003744644.1| ribosomal RNA small subunit methyltransferase e (rsme) [Ralstonia
           solanacearum CFBP2957]
 gi|299070705|emb|CBJ42000.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
           [Ralstonia solanacearum CFBP2957]
          Length = 249

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 114/228 (50%), Gaps = 24/228 (10%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT-- 91
           HVLR+  GD++ LF+G   E+ +++  + +  R      + +    ++ +Y  +  +   
Sbjct: 29  HVLRLAVGDDVQLFDGSGLEFRARLDAINR--RDVTASLADATQPDTEARYAITLAQGIA 86

Query: 92  --NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
             +++D++I+K+VE+G+ AI P+ T  +      +     +   +    +A EQC    +
Sbjct: 87  GGDKMDWLIEKAVELGVHAIAPLQTERSVVRLSGERAAKRVQHWQALVQAACEQCGRARV 146

Query: 144 PFIYPPTTLE--FLLKNWDHNCQIVFADE-----TCGSENSLEKLHAIAHIPNVAILIGP 196
           P + P TTL     +       +++ +       T  +  S E++ +      + +LIGP
Sbjct: 147 PAVSPVTTLRDWLTVAKASDRARVMLSPRGSQSLTQWAAQSRERIDS----AGIELLIGP 202

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG  S ++E+L       PL+LG RILR+++AA+ A++ +    G++
Sbjct: 203 EGGL-SPDEESLAEAAGYLPLTLGRRILRTESAALVAVSALHTALGEF 249


>gi|323704198|ref|ZP_08115777.1| protein of unknown function DUF558 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536264|gb|EGB26036.1| protein of unknown function DUF558 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 12/248 (4%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S ++RLF+          +  GD  H++  VLR++ G ++++ NG      S +S    S
Sbjct: 2   SAVRRLFIKDEDIKDGIVRIYGDDAHHIKDVLRLRIGTDLVVSNGVKQYNASILSIESTS 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  K+  +     + S    +F  + K++++D ++QK  E+G+  I PV T ++      
Sbjct: 62  VLLKIVDELHQVVESSINVTLFQGLPKSDKMDLIVQKCTEIGIKKIVPVETEFSIIKVKE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSE 175
           ++    ++R    +  A++Q   L +P +  P +    +   N    C + +  ET    
Sbjct: 122 KSIGNKINRWNKISQEASKQSGRLIVPEVLEPISFTIAVNYINEFDLCVMPYERETNVRL 181

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             + K +  A   N+ I IGPEGG+   E +T      V  ++LGPRILR++TA + A +
Sbjct: 182 KDVLKENNGAK--NICIFIGPEGGFSHSEVDTATKNGAVI-VTLGPRILRTETAGIVAGS 238

Query: 236 LVQAICGD 243
           ++    GD
Sbjct: 239 IILYELGD 246


>gi|254180624|ref|ZP_04887222.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655]
 gi|184211163|gb|EDU08206.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655]
          Length = 255

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 30/259 (11%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +     +   R    ++ EQC    LP I        L++ +D     + A    G 
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIA-------LVRGFDAWLDALPATPADGE 177

Query: 175 ENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              L    A    A +P      +V +LIGPEGG   +E++   +  F   LSLGPR+LR
Sbjct: 178 LRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLR 236

Query: 226 SDTAAVAAMALVQAICGDW 244
           ++TA  A +A + A  G W
Sbjct: 237 TETAGAAVLAALAARWGGW 255


>gi|296133940|ref|YP_003641187.1| protein of unknown function DUF558 [Thermincola sp. JR]
 gi|296032518|gb|ADG83286.1| protein of unknown function DUF558 [Thermincola potens JR]
          Length = 249

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV        Q    G    +++ VLRM+ GD + L +    E+ ++I+ +    R
Sbjct: 1   MARFFVKDEQVKGVQVFIVGSDVRHISKVLRMRPGDCLTLIDEAGTEYEARITQIAPE-R 59

Query: 67  FKVEYQSR-SQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
              E  +  S  ++  ++ I      K ++L+ +IQK VE+G+  I      R V+    
Sbjct: 60  ITCEIVTETSVNREPPLEVILCQGLPKGDKLELIIQKGVELGVTRIIPVSCTRSVVQLTE 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +      +R +   + AA+QC    +P + P T  +  L+        V   E       
Sbjct: 120 EKAAKRRERWQRVALEAAKQCRRNKVPEVSPLTGFDEALQLIPDGVLAVIPWEDAVGTGL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L +  +   V I IGPEGG+   E E       V P++LG RILR++TA +AA+ +V
Sbjct: 180 KKVLRSYNNRGQVWIFIGPEGGFTEAEIEKAKG-KGVVPVTLGRRILRAETAGIAAITMV 238

Query: 238 QAICGD 243
               GD
Sbjct: 239 LYQLGD 244


>gi|312898001|ref|ZP_07757410.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis
           F0359]
 gi|310620926|gb|EFQ04477.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis
           F0359]
          Length = 243

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 119/242 (49%), Gaps = 17/242 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           +++LF DFP  I+ +   S +   ++  VLR   GD + + +G    +   I+       
Sbjct: 1   MRKLFTDFP--IEGEFYLSPEDSRHVVRVLRHVTGDVLTVSDGTGIAYTCLIADTAGERA 58

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +R   +     +T++ ++    + +K +R D+++QK+ E+G+  + P+  ++       
Sbjct: 59  LMRPLKKIVPEDETERHELILAAALLKNDRFDWLVQKATELGVDRVVPIQMKHCVVKLDE 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSEN 176
           +       R +   + AA+QC    +P +    TL+ L++ +D     + +  E   +  
Sbjct: 119 KRRKERCARWQKIALEAAKQCGRTRVPSVDEVRTLKELIQEYDRYFFFIPYEGEEKAARI 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPRILRSDTAAVAAMA 235
           ++E+    A   +  I IGPEGGY  EE E L  S      +SLG RI+R++TAA+AA +
Sbjct: 179 AVER----AAGEDTVICIGPEGGYAPEEIEELTSSCEQYAVVSLGKRIMRAETAALAACS 234

Query: 236 LV 237
           ++
Sbjct: 235 VI 236


>gi|134280575|ref|ZP_01767286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           305]
 gi|134248582|gb|EBA48665.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           305]
          Length = 255

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 22/255 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     ++++++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMEWVIEKAVELGVAAVAPLSTARGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
              +     +   R    ++ EQC    LP I P    +  L        D   +++ + 
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSP 184

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +      L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 185 R---ASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFAA-LSLGPRVLRTETA 240

Query: 230 AVAAMALVQAICGDW 244
             A +A + A  G W
Sbjct: 241 GAAVLAALAARWGGW 255


>gi|312144013|ref|YP_003995459.1| protein of unknown function DUF558 [Halanaerobium sp.
           'sapolanicus']
 gi|311904664|gb|ADQ15105.1| protein of unknown function DUF558 [Halanaerobium sp.
           'sapolanicus']
          Length = 250

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 119/240 (49%), Gaps = 14/240 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKS 64
           + + F+     I  +    G+ Y++L + LR+  GD +++ + KDG  L    +S+  +S
Sbjct: 1   MNKFFIKDSAAIGEKISIQGNDYNHLKNSLRLNIGDRVIV-SDKDGFDLEAKIVSFQEES 59

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQ 118
              +V  + +S  + Q +V       K  ++D +++K+ E+G  A+ P+     I RY  
Sbjct: 60  AELEVINREKSSVEAQLNVVLAQGLPKKRKMDLIVEKATEIGFKAMIPLESERSIVRYNH 119

Query: 119 NTHYNMD-RVRTYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVFADETCGS 174
                   R +    +AA+Q     +P I   Y  ++L+ L   +D    I++ DE   S
Sbjct: 120 KKKEKKLKRWQRVAEAAAKQSGRSIIPEIKNFYSTSSLKDLKDQFDFRL-ILWEDENKFS 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             +    + +    ++ ++IGPEGG+  +E E L +      ++LGPRI+R++TA +AA+
Sbjct: 179 LKNFFNQNNVKSDASILLIIGPEGGFSEDEVEKLKNDLDAETITLGPRIMRTETAGIAAL 238


>gi|258516359|ref|YP_003192581.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780064|gb|ACV63958.1| protein of unknown function DUF558 [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 257

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           + R++V  P  IK  Q   +G +  ++  VLR+  GD + + +G+ G + ++I+   K  
Sbjct: 1   MTRVYVP-PTRIKGRQACITGTEMEHVNRVLRLAAGDEVTIIDGEGGVFSARITGKNKEK 59

Query: 66  RF-KVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
            F ++  +     +    +  +    K++++D ++QK  E+G+  +      R ++    
Sbjct: 60  VFCEITAEGLPDNEPPVKITLVQGLPKSDKMDLIVQKGTELGLSTLIPLQCERAIVRLDE 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSE 175
           +      +R +   + AA+QC     P +    + + +L++      C + + +ET    
Sbjct: 120 KKAAQRQERWQRIAMEAAKQCKRGKHPSVERAMSWQEVLESLPEKALCLLPWEEETARGL 179

Query: 176 NSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            SL + L A      + I IGPEGG+   E         V P+SLGPRILR++TA +A +
Sbjct: 180 KSLRDNLEAKVPPFEIYIFIGPEGGFTRSEAAQARQY-GVIPVSLGPRILRTETAGIAVL 238

Query: 235 ALVQAICGD 243
           +++    GD
Sbjct: 239 SIIMYEFGD 247


>gi|332878544|ref|ZP_08446264.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683445|gb|EGJ56322.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 242

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 19/224 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++A VLR K+GD + + NGK   +  ++S+   K     +        +   +  +
Sbjct: 21  EESQHIAKVLRKKQGDTLHITNGKGFLFEGQLSFASPKQCEVSILKCQEQIHRPYHLHLV 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P+I ++++ T   ++R     +SA +Q     LP
Sbjct: 81  VAPTKMNERYEWFLEKATEIGIDEITPIICQHSERTSLKLERFEKIILSAMKQSLQCYLP 140

Query: 145 FIYPPTTLEFLLKN--------WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
            +  P T     K         +  +CQ    +E     N+L  L        + ILIGP
Sbjct: 141 TLNSPITSAAFFKQMMTDTSDKYIAHCQ---ENEKILLSNALTPLSE-----RITILIGP 192

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           EG +  EE  T  +  F  P+SLG   LR++TAA+ A   V  +
Sbjct: 193 EGDFSEEEISTAIAQGF-RPISLGDTRLRTETAAIVACHTVLTV 235


>gi|225568735|ref|ZP_03777760.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM
           15053]
 gi|225162234|gb|EEG74853.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 114/221 (51%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK G+ + + +G + ++L  +  Y       K+  +  S T+ +    
Sbjct: 20  GQDVNHMKNVLRMKPGEELTVSDGDNRKFLCAVDRYEEGQAVLKICREEMSDTELASRIC 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ ++QK+VE+G+  + PV+TR +      +     ++R ++   SA++Q
Sbjct: 80  LFQGLPKQDKMELIVQKAVELGVSEVVPVMTRRSVVRLDEKKAARKVERWQSIAGSASKQ 139

Query: 138 CDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
                +P + P     E L +    +  ++  +   G + +   + +I    +V + IGP
Sbjct: 140 AGRGYIPKVAPVAGFGEALRQASAMDVLLIPYELAEGMQETKRVISSIVPGQSVGVFIGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  EE E L       P++LG RILR++TA +  ++++
Sbjct: 200 EGGFEREEVE-LAVEAGAVPITLGRRILRTETAGLTTLSVL 239


>gi|189424061|ref|YP_001951238.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter lovleyi SZ]
 gi|189420320|gb|ACD94718.1| protein of unknown function DUF558 [Geobacter lovleyi SZ]
          Length = 249

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%)

Query: 8   KRLFVDFPLCIKTQGKAS--GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-- 63
           +R F+     I+  G AS  G Q+H++A VLR++ GD ++L + +    L  I  V +  
Sbjct: 4   RRRFIVSSRSIR-DGYASYDGPQHHHMARVLRLRSGDEVMLIDEQGRRHLGVIDQVTQEW 62

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRY 116
            ++R     ++        +  I    K  +++ ++QK  E+G+       A R V    
Sbjct: 63  TAVRLTETLEASQFPDAPAITVIQGLPKGEKIELVLQKGTELGVSEFSIFRADRSVPKLA 122

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                  ++R       AA Q +    P + + P+         +   +++  +   G+ 
Sbjct: 123 GDKLQGRIERWNRIVAEAARQSERFDQPTVAWHPSAAAAAAGAANAELKLLLWER--GAP 180

Query: 176 NSL-EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             L E L  +     +AI IGPEGG+   E E      F TP++LG RILR++TAA+A  
Sbjct: 181 TPLREVLEGMPRPARIAIAIGPEGGFEPGEAEAFSFWGF-TPVTLGERILRTETAALAMT 239

Query: 235 ALVQAICGD 243
           A+VQ   GD
Sbjct: 240 AIVQYKWGD 248


>gi|289434752|ref|YP_003464624.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170996|emb|CBH27538.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 255

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKS 64
           ++R F+D  +  + +  + +G+ +H++  V+RMKEGD + ++F          IS   + 
Sbjct: 1   MQRYFIDKTIENELEPIRITGENFHHMTRVMRMKEGDQVFIVFPSNQTAIAKIISIAAEE 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGM------GAIRPVITRYT 117
           +   V+      T+      I S + K ++L+Y+IQKS E+G        A R V+    
Sbjct: 61  VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPYKAERSVVKWEE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GS 174
           +     +DR++     AAEQ     +P ++   +L E LL N   +  +V  +E+   G 
Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNKQFDYIVVAYEESAREGE 180

Query: 175 ENSLEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           +  L  L     +PN ++L+  GPEGG   +E   L  L  V    LGPRILR++TA + 
Sbjct: 181 DRMLASLFK-ETVPNQSVLVIFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLY 238

Query: 233 AMA 235
            ++
Sbjct: 239 VLS 241


>gi|309775549|ref|ZP_07670549.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916643|gb|EFP62383.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 254

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 10/218 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           + +Q H++  V+RM++GD I + +      L+++ +    ++  +  +    +K S V+ 
Sbjct: 26  TSEQAHHIRRVMRMQQGDVIRVADNSGQIMLAEVEFQKDGVQAHILKELCDHSKTS-VEL 84

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           + +   IK  + DY++QKS E+G   I P ++           T     R       A E
Sbjct: 85  VLAQGMIKGEKWDYLLQKSAELGAAEIIPFVSSRCVVKIKDDKTEKKTARWNKILCEACE 144

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC   TL  +  P     L +       I + D    SE   + L A   I  V +++G 
Sbjct: 145 QCKRSTLVQLKEPCAFSDLKEIPADLRLIAYEDADQCSERLCDVLRAHPSIRRVLMVVGS 204

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           EGG+ +EE   L S  F   +SLG RILR++TAA++ +
Sbjct: 205 EGGFSAEEVAELVSCGF-HRVSLGGRILRAETAALSLL 241


>gi|312127404|ref|YP_003992278.1| hypothetical protein Calhy_1189 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777423|gb|ADQ06909.1| protein of unknown function DUF558 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 243

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  +++  VLR +EGD I L +G + ++ S+I  V K  R K+  +S++   +   + IF
Sbjct: 22  EDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKD-RIKLLIESKTLNDRESTKNIF 79

Query: 87  ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138
                IK  ++D+++QK+ E+G+  I PV+++      ++     ++R R     A +QC
Sbjct: 80  LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISEKQEKKVERWRKIAQEAQKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P I  P  +  + + +     I+F      SE S  +    +   N+ ILIGPEG
Sbjct: 140 LRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS--EWCISSDYNNIGILIGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE E L +   V  +SLG RILRS+TA++AA++++    G+
Sbjct: 198 GFEEEEIEELKTFKNVQVISLGKRILRSETASIAALSILMHEVGE 242


>gi|299535791|ref|ZP_07049112.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1]
 gi|298728991|gb|EFI69545.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1]
          Length = 264

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 17/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  +      + SG+   ++  V+RMK+GDNI++         +   + G  + 
Sbjct: 20  MQRYFIETAI---ENARISGEDARHIERVMRMKQGDNIVVVAQNTAYICTIEGFEGDEVV 76

Query: 67  FKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119
            +   Q+  S      V       K ++L+ + QK+ E+GM A+ P      ++    + 
Sbjct: 77  IEATGQTIPSPELPIQVTVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDKKK 136

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-- 177
                +R++     AAEQ     +P ++ P + + L++  D    +  ADE         
Sbjct: 137 GAKKQERLQKIAKEAAEQAHRTHIPTVFEPISFKQLVQQIDQFDAVFIADEEDAKAEKRT 196

Query: 178 --LEKLHAIAHIPNVAILI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              EKL  +    + ++LI  GPEGG   +E E L      T +SLGPRILR++TA + A
Sbjct: 197 RFAEKLKNVYDKKSKSMLIIFGPEGGISRQESEALLQAGAQT-MSLGPRILRAETAPLYA 255

Query: 234 MALV 237
           ++ +
Sbjct: 256 LSAI 259


>gi|148244283|ref|YP_001218977.1| hypothetical protein COSY_0119 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326110|dbj|BAF61253.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 238

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 19/244 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYH--YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           RL+ +  L  K   K   D+Y   +LA  LR  +G  I LFNG    +L+ I  V     
Sbjct: 5   RLYQNISL--KINKKLVLDEYASCHLAKALRFLQGQEITLFNGDGRNYLATIVRVKNYCE 62

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            ++   + + ++ Q ++  +    K  ++D++ QKSVE+G+  I P+ + Y       + 
Sbjct: 63  VEIHTCTHNNSESQLNITLVQGITKGEKMDFLTQKSVELGVNRIIPIFSEYCVIHLQDEK 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               M+R +   I A EQ     +P +        L  N++      F +       +  
Sbjct: 123 LQKRMERWQKIIIGACEQSGRSVIPSL-------VLAMNFEDFVNTKFGNGFILHHRAKY 175

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +  +    I+IGPEGG   +E    +       L LG RILR++TA++A +A +Q 
Sbjct: 176 SLLEMNKVNQATIIIGPEGGLSDQEIANANE-QGAQSLVLGSRILRAETASLATIANMQL 234

Query: 240 ICGD 243
           + G 
Sbjct: 235 LWGS 238


>gi|168826710|gb|ACA32081.1| protein of unknown function DUF558 [Haemophilus somnus 2336]
          Length = 272

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 45/243 (18%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM+ G+ I LF+G +  + + I+   K    +V   SR    +    +
Sbjct: 48  SDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA-IEVNILSRQLDNRESPLF 106

Query: 85  I-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132
           I    +  +  R+++ IQKSVE+G+  I P+   +++     +D+ R            I
Sbjct: 107 IHLGQVISRGERMEFTIQKSVELGVNIITPL---WSERCGVKLDKDRMEKKIQQWQKIAI 163

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH---------- 182
           SA EQC    +P I P   L+    +W            C  ++   KL+          
Sbjct: 164 SACEQCGRNIVPEIRPLMKLQ----DW------------CAEQDGTLKLNLHPRAKYTIR 207

Query: 183 AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +  IP   V +LIGPEGG  ++E     +  F T + LG R+LR++T A++A+  +Q  
Sbjct: 208 TLPEIPPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAITALQVC 266

Query: 241 CGD 243
            GD
Sbjct: 267 FGD 269


>gi|229220771|ref|YP_001783785.2| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 2336]
          Length = 245

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 45/243 (18%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D  +++  VLRM+ G+ I LF+G +  + + I+   K    +V   SR    +    +
Sbjct: 21  SDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA-IEVNILSRQLDNRESPLF 79

Query: 85  I-FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTI 132
           I    +  +  R+++ IQKSVE+G+  I P+   +++     +D+ R            I
Sbjct: 80  IHLGQVISRGERMEFTIQKSVELGVNIITPL---WSERCGVKLDKDRMEKKIQQWQKIAI 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH---------- 182
           SA EQC    +P I P   L+    +W            C  ++   KL+          
Sbjct: 137 SACEQCGRNIVPEIRPLMKLQ----DW------------CAEQDGTLKLNLHPRAKYTIR 180

Query: 183 AIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +  IP   V +LIGPEGG  ++E     +  F T + LG R+LR++T A++A+  +Q  
Sbjct: 181 TLPEIPPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAITALQVC 239

Query: 241 CGD 243
            GD
Sbjct: 240 FGD 242


>gi|160942759|ref|ZP_02090000.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445924|gb|EDP22927.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii
           M21/2]
          Length = 247

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 27/237 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DVQ 83
           G   H+LA V+R K GD ++L +G   E+ + I+  G+  + F VE    S  + + +V 
Sbjct: 19  GADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDRVDFAVEPGYPSAAEPTVEVT 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139
            +    K ++L+ +I+  VE+G   I P  +RY     +      +R     + AA+QC 
Sbjct: 79  LLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKKEEQKNERYNRIALEAAKQCG 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN--- 189
              LP +  P      L N+   C+       ++F  E  G+   L +L A A   +   
Sbjct: 139 RGVLPDVALP------LPNFGAVCRSFAQYDLVLFCYECGGA--PLRQLLADAKPADGQK 190

Query: 190 --VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             +AI+ G EGG+ +EE E        T + LGPRILR +TA +A ++ V  + G+ 
Sbjct: 191 LRLAIVTGAEGGFAAEEAEMAAKAGAKT-VGLGPRILRCETAPLAVLSAVMILTGNL 246


>gi|325577675|ref|ZP_08147950.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160420|gb|EGC72546.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC
           33392]
          Length = 263

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 23/243 (9%)

Query: 15  PLCIKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-Y 71
           P  +K Q   + S D  +++  VLRM E + I LF+G +  + +KI  V K    KVE  
Sbjct: 28  PESLKNQSTCQLSEDAANHVGRVLRMTESEQIELFDGSNHIYPAKIIEVSKKA-VKVEIL 86

Query: 72  QSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR- 128
                 K+S++      +  + +R+++ IQKSVE+G+  I P+   +++     +D  R 
Sbjct: 87  GCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPL---WSERCGVKLDGERM 143

Query: 129 --------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                      I+A EQC    +P I P   L+      D   ++        ++ S++ 
Sbjct: 144 DKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGTLKLNLHPR---AQYSIKT 200

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L +I     V +LIG EGG   +E        F T + LG R+LR++TA++AA++ +Q  
Sbjct: 201 LPSIPK-EGVRLLIGSEGGLSPQEIVQTEQQGF-TEILLGKRVLRTETASLAAISALQIC 258

Query: 241 CGD 243
            GD
Sbjct: 259 FGD 261


>gi|300775606|ref|ZP_07085467.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300505633|gb|EFK36770.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 231

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 12/214 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI- 85
           ++  ++  VLRMK+G++I + +GK      K+   GK    ++     +  + S + +I 
Sbjct: 18  EEQQHIVKVLRMKDGEDIHVTDGKGKLASGKLIIEGKKAGIEISEIKENMPEFSPMLHIA 77

Query: 86  FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K  +R+++ ++K+VEMG+  I  + T  T+  + N+D++R   ++A++Q      P
Sbjct: 78  IAPTKNIDRIEFFVEKAVEMGISEITILQTEKTERKNVNIDKIRKQAVAASKQSLRFHFP 137

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYH 201
            I     ++  LK+ D     V          +LE++ A+ +IP    +  LIGPEG + 
Sbjct: 138 VINDLIKIQDFLKSIDPEHTFV-----AHCHENLERI-ALKNIPKMEKLTFLIGPEGDF- 190

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           SE++    +   V  +SLG + LR++TA V   A
Sbjct: 191 SEKEIAFLAENKVRAVSLGNQRLRTETAGVFVAA 224


>gi|229075985|ref|ZP_04208958.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18]
 gi|228707097|gb|EEL59297.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18]
          Length = 249

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD+I    NGK     + +I+  +V 
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G+ A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGVAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|229825010|ref|ZP_04451079.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC
           49176]
 gi|229790757|gb|EEP26871.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC
           49176]
          Length = 246

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 15/225 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMKE D I L  G    + + IS ++   I  ++      +++     
Sbjct: 19  TGSDVNHIKNVLRMKESDEIKLSAGDGLLYTATISEFLPDRIVCRIIDCEGGKSELPAKI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAA 135
            +F  + K ++++ +IQK+VE+G+  I PV+ + T       +     ++R RT +++AA
Sbjct: 79  VLFQGLPKKDKMELIIQKAVELGVSEIVPVMMKRTIVKFEDNKKEQKKLERWRTISLTAA 138

Query: 136 EQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           +Q     +P +    T    +K     ++N  I + +E  G + + E +  + +  ++ I
Sbjct: 139 KQSGRAVVPEVSDFITFNEAVKRAEGLEYNL-IPYENEK-GMDKARELIKEVKNKKSIGI 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            IGPEGG   +E E L       P+SLG RILR++TA +A ++++
Sbjct: 197 FIGPEGGISEDELE-LAINAGAKPISLGNRILRTETAGLALVSVI 240


>gi|261378167|ref|ZP_05982740.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685]
 gi|269145632|gb|EEZ72050.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685]
          Length = 241

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 25/225 (11%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD----VQYIFSPI 89
           +VLR++ G  I+LF+GK     ++++ + K  R + E   R +T  ++    +  I S  
Sbjct: 27  NVLRIRTGTEIILFDGKGKAHAARLTVLEKR-RAEAEIL-REETADTESPLHITLIQSIS 84

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
              R+D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+
Sbjct: 85  SGERMDFTLQKSVELGITAIQPVISERCIVRLNGERADKRLARWQEIVISACEQSGRNTV 144

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPEGG 199
           P + P TT    L+            E+     S+ +   +A I     ++  ++GPEGG
Sbjct: 145 PPVLPITTYRESLRQ--------IPSESTRLIMSINRACKLADIRPQSGSIVFMVGPEGG 196

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  +E++      F   ++LG RILR++TAA+AA+A +Q + GD+
Sbjct: 197 WTEQEEQYAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 240


>gi|157372259|ref|YP_001480248.1| hypothetical protein Spro_4025 [Serratia proteamaculans 568]
 gi|157324023|gb|ABV43120.1| protein of unknown function DUF558 [Serratia proteamaculans 568]
          Length = 243

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL    +   S D  +++  VLRM  G  + LF+G +  + + I+ V K S
Sbjct: 2   RIPRIYHPQPLIDHAEIFLSEDAANHIGRVLRMNAGQALQLFDGSNQVFDAVIAQVDKKS 61

Query: 65  IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
           ++ ++   + + R       +  + S  +  ++++ IQKS+E+G+  I P+ +       
Sbjct: 62  VQVQLSAGQLEDRESPLNLHLGQVIS--RGEKMEFTIQKSIELGVNVITPLFSERCGVAL 119

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             +     + + +   I+A EQC    +P I     LE      D + ++        S 
Sbjct: 120 SGERLAKKIQQWQKIAIAACEQCGRNRIPEIREAMQLEAWCAEQDGSLKLNLHPRASHSI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L        + NV +LIGPEGG  + E        F T + LGPR+LR++T A+ A+ 
Sbjct: 180 NTLP-----LPVENVRLLIGPEGGLSTGEIAMTTGHGF-TDILLGPRVLRTETTALTAIT 233

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 234 ALQVRFGD 241


>gi|163847399|ref|YP_001635443.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525248|ref|YP_002569719.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus sp.
           Y-400-fl]
 gi|163668688|gb|ABY35054.1| protein of unknown function DUF558 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449127|gb|ACM53393.1| protein of unknown function DUF558 [Chloroflexus sp. Y-400-fl]
          Length = 252

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 13/240 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +R FV+ P  ++T      D    H    VLR++ GD ++L +G+    + +I+++ +  
Sbjct: 12  RRFFVN-PGWLRTDQVEIDDAAIIHQWERVLRLRAGDRVMLLDGQGLAAIVEITHIDRR- 69

Query: 66  RFKVEYQSRSQTKQSDV---QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120
           R + +  +R Q             + I+  R ++ IQK+VE+G+  I PV    +  T  
Sbjct: 70  RARGQVVARCQASGEPAVTFDLYLALIRPERFEWAIQKAVELGVYRIVPVTFARSLITGR 129

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
              + + R +     AAEQ     LP +  P +    L    H   +    +   + +  
Sbjct: 130 IDEHRLARWQRIATEAAEQAGRGRLPVVAEPQSFAAALTR-AHTADLAILLDEQATVHLR 188

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L     +  +AI  GPEGG    E+   H    +  +SLGPRILR++TA + A+A++Q
Sbjct: 189 TVLPPQPSLRQIAIYSGPEGGIDPAERTAAHQ-HGIQSVSLGPRILRAETAPLVALAMLQ 247


>gi|331091342|ref|ZP_08340182.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404503|gb|EGG84047.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 245

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 111/223 (49%), Gaps = 12/223 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
            G   +++ +VLRMK+G+ + + +G + +++ +I     + +  ++  +    T+ S   
Sbjct: 19  EGSDVNHICNVLRMKKGEKLQISDGNNKKYICRIEDMTAEKVLLQIVEEKLGDTELSSKI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K++++++++QK+VE+G   I PV T+        +     ++R  +     A+
Sbjct: 79  YLFQGLPKSDKMEWIVQKAVELGAYEIIPVSTKRAVVKLDAKKAAKKVERWNSIAEGGAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILI 194
           Q     +P +    T    L  +     IV    +   G + + E +  I    +V I I
Sbjct: 139 QSGRTVIPKVREVMTYREALA-YAETLDIVLVPYELAEGMDKTKEFIGQIEKGQSVGIFI 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  EE E    +    P++LG RILR++TA +  ++++
Sbjct: 198 GPEGGFEKEEVEQAMEMG-AEPITLGKRILRTETAGLTVLSIL 239


>gi|258647970|ref|ZP_05735439.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259]
 gi|260851810|gb|EEX71679.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259]
          Length = 255

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 119/250 (47%), Gaps = 21/250 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           +K   V +   I T  +   D+  ++  VLRMKEG+ I++ +GK   + + +S V     
Sbjct: 1   MKEFHVFYAPDIATNKELPHDEAQHITKVLRMKEGEEIIITDGKGSFYKAALSLVTNKHC 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           S++   +  +R   K + ++   +P K  +R+++ ++K+ E+G+  I  V   +++    
Sbjct: 61  SVQLLSQESARPLWK-NKLEIAVAPTKHLDRMEWFVEKATEIGVDQINFVACEFSERKQI 119

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLE------FLLKNWDHNCQIV--FADETCGS 174
            ++R+    ISA +Q     LP I    T        F  K +  +C  +    D     
Sbjct: 120 KIERMNRIAISAMKQSHKAILPQIPEMITFNAFINRPFEGKRYIAHCYNMENICDADSSP 179

Query: 175 ENSLEKLHAIAHI-------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            N+   +H+ A +        +  +LIGPEG +   E E   +  F+ P+SLG   LR++
Sbjct: 180 TNASTSIHSSAFLGQLLKGEESTQVLIGPEGDFSMREVEAAMAAGFI-PVSLGNSRLRTE 238

Query: 228 TAAVAAMALV 237
           TAA+ A+ L+
Sbjct: 239 TAALVAVHLM 248


>gi|149176993|ref|ZP_01855602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797]
 gi|148844248|gb|EDL58602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797]
          Length = 242

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 24/226 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
           G + H+L HVLRM+ GD +L+FNG   E    IS    K++  +V  +  +Q K      
Sbjct: 20  GSEAHHLLHVLRMQAGDTVLVFNGTGAEAEGVISKTSRKTVEVQVTARHAAQAKSQTPLI 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNMDRVRTYTISAAEQCDIL 141
           + + + K +R  ++++K+ E+G+  + P++TR +        + +++   +SAA+Q   +
Sbjct: 80  LATAVPKGDRFRWLVEKAAELGVTKLVPLLTRRSSVDPGQNRLKKLQQTIVSAAKQSGQI 139

Query: 142 TLPFIYPPTTLEFLLKNWDH--------NCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            L  +         ++NWD           +++ AD   GS     +       P V IL
Sbjct: 140 QLMELTE-------VQNWDEFLSEISQTESRLLIAD-PAGSGVDFFRSGEKRESP-VVIL 190

Query: 194 IGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           IGPEGG+  +E +  L        LS G  ILR +TAA+    L++
Sbjct: 191 IGPEGGFTPDELQSALEKGAKSVRLSEG--ILRIETAAILFAGLIR 234


>gi|167564119|ref|ZP_02357035.1| hypothetical protein BoklE_16297 [Burkholderia oklahomensis EO147]
          Length = 253

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 46/267 (17%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S + R FVD  L          D   ++  VLR+  GD + LFNG  G++ +++  + K 
Sbjct: 6   SAIPRFFVDAELQSDATLALPADVARHV-QVLRLAAGDAVTLFNGAGGQYRAEVVELDKR 64

Query: 65  ---IRFKVEYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VI 113
              +R      +  +   + + VQ I      +++D++I+K+VE+G  AI P      V+
Sbjct: 65  AALVRIGAFTPADVEAPYRITLVQGIAG---GDKMDWLIEKAVELGAAAIAPLSTARGVV 121

Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----------------PTTLEFLLK 157
               +     +   +    ++ EQC    +P + P                P  L  +L 
Sbjct: 122 RLSGERAQKRVAHWQAVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELRLMLS 181

Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL 217
                  + FAD           L  +     V +LIGPEGG   +E+E      F + L
Sbjct: 182 P---RASVGFAD-----------LPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFASIL 227

Query: 218 SLGPRILRSDTAAVAAMALVQAICGDW 244
            LGPR+LR++TA +A +A + A  G W
Sbjct: 228 -LGPRVLRTETAGIAMLAALAARWGGW 253


>gi|21674816|ref|NP_662881.1| hypothetical protein CT2005 [Chlorobium tepidum TLS]
 gi|21648035|gb|AAM73223.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 248

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 15/222 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           G+++H+LA VLR + GD + + +G        +  +GK S+   +         ++ V  
Sbjct: 22  GEEFHHLARVLRCQPGDVVPITDGAGFAAELMVGSIGKHSLDGAICNPRTVPPPKTQVTV 81

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQ 137
             S +K+  R D  ++K+ E+G   I P+IT+ T +T         ++R R    SAA Q
Sbjct: 82  ALSLLKSPQRFDLFLEKATELGAARIVPMITKRTVSTPDSGKVGRKLERWRGIVQSAARQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                LP +  P T    L    ++ +++  +    SEN+            +  L+G E
Sbjct: 142 SRRYHLPELMSPLTFREALVLDGYDLRLIAHE----SENAFPSFEPAGK--KILFLVGGE 195

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           GG+   E        F TPLS G  +LR++TA + A+ALV+A
Sbjct: 196 GGFTDAEVADAVEAGF-TPLSFGESVLRAETAGIFAVALVRA 236


>gi|290968566|ref|ZP_06560104.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781219|gb|EFD93809.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 241

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 119/241 (49%), Gaps = 16/241 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           ++++F DFPL  + + + +G    ++  VLR   GD I + +     +  +I S  G S 
Sbjct: 1   MRKIFTDFPL--EARFELNGADARHVLVVLRHGVGDRIAVTDSTGTTYACRIDSIAGHSA 58

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
              VE +   +T+++  V      +K ++ +++IQK+ E+G+  I PV     + +   N
Sbjct: 59  VLTVEERLSCRTQETGKVVLAAGLLKNDKFEWLIQKATELGVHTIIPVQMEHCVVKLNDN 118

Query: 120 THYN-MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENS 177
                 +R R   + AA+QC    +P I        L + +  +  ++ +  ET     S
Sbjct: 119 HRSGKFERWRRIAVEAAKQCGRDDVPIIREVMPFTELFQAYGTSRFVIPYERET----TS 174

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L ++       +V + IGPEGG+  +E    +    +   +SLG RILR++TAA+A++++
Sbjct: 175 LAEVCHEVQQGDVVLCIGPEGGFSPKEIAYAVSQAAWCRTVSLGKRILRAETAALASLSI 234

Query: 237 V 237
           +
Sbjct: 235 L 235


>gi|242373882|ref|ZP_04819456.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           M23864:W1]
 gi|242348436|gb|EES40038.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           M23864:W1]
          Length = 253

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 14/220 (6%)

Query: 30  HYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           H++ HV+R KEG++I++ F+ K       IS    +I  +++ +    T+      I S 
Sbjct: 28  HHITHVMRYKEGNHIIITFSDKKVYKCEIISINDNNIELRLDEKQDINTELPQHITICSG 87

Query: 89  -IKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
            IK ++ ++MIQK+ EMG      +G  R VI          +DR +     AAEQ   L
Sbjct: 88  LIKADKYEWMIQKATEMGASEFIAVGMDRSVIKLNESKVAKKIDRWQKIIKEAAEQSYRL 147

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VAILIGPE 197
           T+P IY  + L+ +    +H   ++ A E       L    H +    +   V ++ GPE
Sbjct: 148 TIPNIYFKSNLKAIYDMINHYDYVLIAYEEQAKHGDLSHFKHILKQFESQDRVLMIFGPE 207

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GG   +E          T + LGPRILR++TA + A++ V
Sbjct: 208 GGLSDKEVSLFQEHS--TLVGLGPRILRAETAPLYALSAV 245


>gi|86156675|ref|YP_463460.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773186|gb|ABC80023.1| hypothetical protein Adeh_0247 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 240

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 17/225 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  HYL  VLR+  G  + LF+G+ G W  + + +       +  +  +    + V  + 
Sbjct: 23  EARHYLRDVLRLAPGAAVELFDGRGGAW--EATVLDGFEALALGARRAAPGGGAPVWLLV 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           +  K  ++D ++QK+ E+G   I P      V+    +       R R     AA QC  
Sbjct: 81  ALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKGEARAARWRRIAEEAARQCGR 140

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEG 198
             +P +  P +LE  L          F     G+      L   A  P    A ++GPEG
Sbjct: 141 ADVPEVRAPASLEAALAEVPAGFG-AFVFHPGGA-----PLSEAAPSPAGGYAAVVGPEG 194

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G    E+E   +       SLGPR+LR++TAA+ A+AL+QA  GD
Sbjct: 195 GLTDAEREAC-ACAGARATSLGPRVLRAETAAIVAVALLQARFGD 238


>gi|332520272|ref|ZP_08396734.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4]
 gi|332043625|gb|EGI79820.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4]
          Length = 234

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 10/213 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDV 82
           S ++  ++  VLR ++GD + + NGK G+  + +  +   KS   +++          ++
Sbjct: 19  SKEESRHIVKVLRKRDGDILHITNGK-GDVFTAVILIAAIKSCTVEIKEVVTQNPLNYNL 77

Query: 83  QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K N R ++ ++K+ E+G+ +I P+I  +++      DR      SA +Q    
Sbjct: 78  HLAVAPTKMNDRYEWFLEKATEIGISSITPIICDHSERKVIKEDRFEKILQSAMKQSLSA 137

Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            LP + P     EFL ++++    I   +ET  ++ SL+K+  +    ++ ILIGPEG +
Sbjct: 138 YLPKLNPAIAFKEFLKQDFNSALYIAHCEET--NKKSLKKV--LQTNTDITILIGPEGDF 193

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            ++E E   +  ++ P++LG   LR++TAA+ A
Sbjct: 194 STKEIELALANNYI-PVTLGETRLRTETAAIVA 225


>gi|166031241|ref|ZP_02234070.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC
           27755]
 gi|166029088|gb|EDR47845.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC
           27755]
          Length = 248

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 123/246 (50%), Gaps = 22/246 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           ++  FVD     +   +  G   +++ +VLRM+ G+ + + +G+  E+L ++  +  + +
Sbjct: 1   MQHFFVDASQVSEETIRIEGTDVNHMKNVLRMRIGEEVTVSDGQGKEYLCQVRDFEEEQV 60

Query: 66  RFKVEYQSRSQTKQSDVQ-----YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY--- 116
           + K+      +TK SD +     Y+F  + K  +++ ++QK VE+G+ A+ PV  +    
Sbjct: 61  QLKI-----VETKASDAELPSKIYLFQGLPKQEKMELIVQKCVELGIYAVVPVSMKRCVV 115

Query: 117 ---TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC- 172
               +     ++R  T   SAA+Q     +P +    T +  L+    +  +V     C 
Sbjct: 116 KLDAKKGAKKVERWNTIAASAAKQSGRGIVPEVTSVKTYKEALE-MAKDLDVVLVPYECA 174

Query: 173 -GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            G E++ E + +I    +V I IGPEGG+  +E      +     ++LG RILR++TA +
Sbjct: 175 EGMEHTKELIQSIKPGQSVGIFIGPEGGFDPDEIALACEMGGQV-ITLGKRILRTETAGL 233

Query: 232 AAMALV 237
           A ++++
Sbjct: 234 ALLSVL 239


>gi|99034296|ref|ZP_01314342.1| hypothetical protein Wendoof_01000858 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 141

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 76/137 (55%), Gaps = 1/137 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 69  VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
              +   Q +  +  Y++   +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLP 144
           +   I AAEQ   +++P
Sbjct: 125 KLQAIEAAEQSGRISIP 141


>gi|30248783|ref|NP_840853.1| hypothetical protein NE0779 [Nitrosomonas europaea ATCC 19718]
 gi|30180378|emb|CAD84690.1| Conserved hypothetical protein 46 [Nitrosomonas europaea ATCC
           19718]
          Length = 252

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 19/236 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           + D  H+ A VLR+K GD + LF+G  GE+  ++  + KS  + ++E     + +   + 
Sbjct: 20  NSDTSHHAAQVLRLKPGDAVTLFDGTGGEFSGRLEQISKSGCQVRIECHLPVERESPLMI 79

Query: 84  YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTY----TISAAE 136
            +   +  N ++D++IQK++E G   I+P+ITR T  + T    D+   +     I+A E
Sbjct: 80  ELAQAVCANEKMDWIIQKAIEQGATRIQPLITRRTLIRLTGERADKREQHWQKIIIAACE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--------SENSLEKLHAIAHIP 188
           QC    +P + P   L   L+      +    D   G        +   L +L       
Sbjct: 140 QCGRNQIPLLLPLMPLSHWLEQ--KLAEKYKNDNPAGHDIMLSPAAHQRLVELSPPRTGE 197

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +L GPEGG+  EE +  H   F+ P+ LG RILR+++AA+AA+A  Q + GD+
Sbjct: 198 CLTLLTGPEGGFTGEETDAAHLAGFI-PVRLGNRILRTESAALAAIAAAQTLWGDY 252


>gi|326791224|ref|YP_004309045.1| ribosomal RNA small subunit methyltransferase E [Clostridium
           lentocellum DSM 5427]
 gi|326541988|gb|ADZ83847.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
           lentocellum DSM 5427]
          Length = 246

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 20/243 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV+     + +    G   +++ +VLR+  G  IL+ N +  ++   I  +   + 
Sbjct: 1   MAKFFVNSEDVFENEIHIKGTDVNHIKNVLRLPVGKEILINNRQGKDYKCIIKLIDTDLV 60

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
                    +T +  VQ +   S IK  +++++IQK++E+G+  I P+IT          
Sbjct: 61  TADIIGELEETTEPAVQTVLFQSLIKGEKMEFVIQKAIEIGVTVIIPIITERCIVKLESD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           + T    +R +    SAA+Q     +P +  P T +  L       ++     +C    +
Sbjct: 121 KKTKSKCERWQKIAESAAKQSKRGIVPEVLWPMTFKEALTYAKQQLEV-----SCIPFEN 175

Query: 178 LEKLHAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
               H   ++ N     + I IGPEGG+  EE   L S   ++P++LG RILRS+TA + 
Sbjct: 176 EHAYHIKTYLKNCKAKSIGIFIGPEGGFTDEEV-LLASTFQISPITLGKRILRSETAGLV 234

Query: 233 AMA 235
            +A
Sbjct: 235 TLA 237


>gi|220909539|ref|YP_002484850.1| 16S ribosomal RNA methyltransferase RsmE [Cyanothece sp. PCC 7425]
 gi|219866150|gb|ACL46489.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7425]
          Length = 243

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 5/237 (2%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L+RL +      + Q   +  Q+HYL  VLR+  GD  L        WL+++S     
Sbjct: 2   ARLQRLAIASTQRQQQQIYLTPSQHHYLIQVLRLTVGDRFLAILEPGERWLAELS--SSQ 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
           +   +E           V  + +  K    D ++ ++ E+G+  I P+I+  T  Q +  
Sbjct: 60  VALLLEEVEGETELAVPVTLLAALPKGQGFDQVVYQATELGVSRIIPLISDRTLLQPSEQ 119

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R R     A EQ   L +P I PP      +  ++   Q ++      +   L    
Sbjct: 120 KLERWRRIVREATEQSGRLVVPRIDPPLRFSPAIAAFNPADQQLYFCTPDPAAPHLADCL 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           A A    +AI+ GPEGG+   E     +  F + +SLG R+LR+ TA + A++LV A
Sbjct: 180 ADAPFNPIAIMTGPEGGWTETEMTQAQAAGFQS-VSLGQRVLRAVTAPIVALSLVAA 235


>gi|229117808|ref|ZP_04247172.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3]
 gi|228665605|gb|EEL21083.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3]
          Length = 249

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 20/244 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD+I    NGK     + +I+  +V 
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA +
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPL 235

Query: 232 AAMA 235
            A++
Sbjct: 236 YALS 239


>gi|239627767|ref|ZP_04670798.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517913|gb|EEQ57779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 249

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 116/235 (49%), Gaps = 22/235 (9%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75
           CI+     +G   +++ + LRMK G+ +L+ +G   ++   +S +    +  ++    R 
Sbjct: 15  CIRI----TGPDVNHMKNALRMKPGEEVLISDGTGTDYRCALSSLDSDCVEARIVSVDRD 70

Query: 76  QTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
             +     ++F  + K+++++ +IQK+VE+G   I PV T+        +       R +
Sbjct: 71  GRELPSRIWLFQGLPKSDKMELIIQKAVELGAACIVPVSTKNAVVKLDAKKEEAKRKRWQ 130

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA------DETCGSENSLEKLH 182
               SAA+Q     +P +    TL    + +D+  +  FA      +   G E S ++L 
Sbjct: 131 AIAESAAKQSGRSLMPEVMGLMTLG---QAFDYIEKEQFALRLIPYEHEAGMEGSRQELS 187

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +    ++A+ IGPEGG+  E +  L     V P+SLG RILR++TA +A ++++
Sbjct: 188 RVGPGQDIAVFIGPEGGF-DEAEINLALKKGVRPVSLGKRILRTETAGLAMLSVL 241


>gi|32490916|ref|NP_871170.1| hypothetical protein WGLp167 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166122|dbj|BAC24313.1| yggJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 205

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 30/217 (13%)

Query: 44  ILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN---------R 93
           +L+FNGK+ E+L KI  Y  K+    + +Q          +Y+ S +K N          
Sbjct: 3   VLIFNGKEKEFLGKILKYKNKNTYIFLMHQIH--------KYVESTLKINLGQVLCNKKS 54

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D+++QKSVE+G+  + P+ +  +      +N +  +DR     I +++QC    L  I 
Sbjct: 55  MDFLVQKSVELGIHTLTPLFSSRSNEFLNKKNLNKIIDRWEKIIIQSSQQCGRNFLLKIN 114

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
            P ++         + +I +AD    SE  +++++    I N+ +LIGPEGG   EE   
Sbjct: 115 DPISIYKWCDTKSTSFKI-YADPY--SEKKIKEINQ--KIKNINLLIGPEGGLSKEEVFH 169

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +    F   +  GPRILR++T+ ++ ++++Q   GD+
Sbjct: 170 VEKNNF-NKIKFGPRILRTETSVISIVSILQMYFGDF 205


>gi|172039252|ref|YP_001805753.1| hypothetical protein cce_4339 [Cyanothece sp. ATCC 51142]
 gi|171700706|gb|ACB53687.1| DUF558-containing protein [Cyanothece sp. ATCC 51142]
          Length = 241

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 18/227 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +Q HYL +VLR+KE    ++ +G+   +L K++     I   ++ ++       +V  + 
Sbjct: 22  EQKHYLKNVLRLKENSEFIVLDGQYNTYLVKLNNDNGQIIKPLKEETELPI---NVTLMI 78

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
           +  K    D +I+   E+G+  I P+I++ T  + + + +DR R     A EQ +   +P
Sbjct: 79  ALPKGKGFDEVIRSCTELGVNTIIPIISQRTLLKPSSHKLDRWRKIVKEATEQSERQRVP 138

Query: 145 FIYPPTTLEFLLKNW---DHNCQIVFADETCGSENSLEKL--HAIAHIPN-VAILIGPEG 198
            I  P +    LKN    + NC I      C +    + L  + +  I N + I  G EG
Sbjct: 139 TILEPISFSEALKNTKQPNQNCYI------CVTRKHAKHLLTYLLPEITNSITIATGCEG 192

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           G+  +E     +L F+  ++LG R+LR+ TA + A++LV ++    Y
Sbjct: 193 GWTEKEINEAINLGFIA-VNLGSRVLRAVTAPLVALSLVTSVIEQSY 238


>gi|22299289|ref|NP_682536.1| hypothetical protein tlr1746 [Thermosynechococcus elongatus BP-1]
 gi|22295472|dbj|BAC09298.1| tlr1746 [Thermosynechococcus elongatus BP-1]
          Length = 270

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 10/215 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           + +Q HYL HVLR+K GD + + +G+   WL +I   GK+++  +    R     +++  
Sbjct: 50  TAEQQHYLYHVLRLKVGDELWILDGQGQRWLGQIQ--GKTVKL-LRPDCRETELSTEIIL 106

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142
             + +K    + ++Q++ E+G+  I P+ T  +  Q +     R +     AAEQ + L 
Sbjct: 107 CLALLKAANFEQVLQQATELGVKRIVPIQTARSLLQPSINKYQRWQRILQEAAEQSERLY 166

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +  P ++  ++          +       E   + L  +     + + IGPEGG+ +
Sbjct: 167 VPALSDPLSVAEMVSLTPKG----YIASLAAPELLWDCLPQMNLSEPIYLAIGPEGGWTA 222

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E E + +  +   +SLG R LR+ TAA+A++++V
Sbjct: 223 SELEQVLAAGW-QAVSLGRRTLRAVTAAIASLSVV 256


>gi|257059193|ref|YP_003137081.1| hypothetical protein Cyan8802_1323 [Cyanothece sp. PCC 8802]
 gi|256589359|gb|ACV00246.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8802]
          Length = 239

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 16/221 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +Q HYL  VLR+K GD  +  +G+   +L+++     S +     +  ++   +    + 
Sbjct: 21  EQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEE--DSAKILQNLKECTELPLAITLMVA 78

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
            P K N  + +++   E+G+  + P+I++ T  + + + ++R R     A EQ +   +P
Sbjct: 79  LP-KGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKLERWRKIATEAGEQSERQLIP 137

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-----ILIGPEGG 199
            I  P      L+N D   +I      C +       H + H+   +     I  G EGG
Sbjct: 138 TIVDPIVFNEALRNID---KIPSDRYICVTRKKAH--HLLTHLSETSQNPLVIATGCEGG 192

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +  EE ET  +  F  P++LGPRILR+ TA + A++L  ++
Sbjct: 193 WTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSLAVSV 232


>gi|167586100|ref|ZP_02378488.1| hypothetical protein BuboB_12224 [Burkholderia ubonensis Bu]
          Length = 255

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD ++LF+G  G++ +++      
Sbjct: 8   AAVPRFFVEAALSAGAVLALPADVARH-AQVLRLQPGDALVLFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ AI
Sbjct: 61  ----VEIDKRSAVAQLDA---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAI 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KN 158
            P      V+    +     +   R    ++ EQC    +P + P    +  L       
Sbjct: 114 APLSTSRGVVRLSGERAEKRVAHWRGIVRASCEQCGRNRVPDVAPVRGFDAWLDALPAAR 173

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A   +V +LIGPEGG   +E+    +  F T LS
Sbjct: 174 ADGELRLLLSPRASMPFASLPDAPPAA---SVTLLIGPEGGLSPDEEHAARTHGF-TALS 229

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255


>gi|330983201|gb|EGH81304.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 201

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 18/207 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 1   MSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 58

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+I+         
Sbjct: 59  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKTTELGVSEITPIISERCEVRLKD 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 119 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL-------HPV 171

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEE 204
            E L +     ++A LIGPEGG +  E
Sbjct: 172 AEPLTSHDKPASLAFLIGPEGGLNDAE 198


>gi|332975772|gb|EGK12653.1| RsmE family RNA methyltransferase [Desmospora sp. 8437]
          Length = 248

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R F+D       +    GD  H++ +V+RM+ GD ++  + +  ++L+++  V +   
Sbjct: 1   MQRYFIDSTQIGPDRITVRGDDVHHIKNVMRMRAGDRLICCDSRGTDYLAELETVSEGEA 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             R      SR + +   V    S  K ++ ++++QK  E+G  +  P I+  T      
Sbjct: 61  RCRILERMPSRGEPR-FRVAVAASLTKGDKWEWVLQKGTELGAASFLPFISARTVVKWDG 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +      +R +     AAEQ     +P +        LL+ +    +++FA E  G   S
Sbjct: 120 KKADKKKERWQRIAKEAAEQSHRGQIPHVETVMDWRSLLERFPAFDRVLFAYEKGG--RS 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        + ++IGPEGG+   EK    +   V+ + LGPRILR++TA +A ++ +
Sbjct: 178 LGAVLREVTGERMLVVIGPEGGFTETEKSEAVAAGAVS-IHLGPRILRAETAPLALLSCI 236


>gi|238026201|ref|YP_002910432.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia glumae BGR1]
 gi|237875395|gb|ACR27728.1| Hypothetical protein bglu_1g05320 [Burkholderia glumae BGR1]
          Length = 253

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 17/252 (6%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           S + R FVD PL   ++     +   ++  VLR++ GD + LF+G  G++ +++  +GK 
Sbjct: 6   SAIPRFFVDRPLQADSEVMLPAEVARHV-QVLRLEPGDPLTLFDGTGGQYRAELVELGKR 64

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            ++   V + +R       V         +++D++I+K+VE+G+ A+ P      V+   
Sbjct: 65  NAVARTVGFDARELETPYRVTLAQGIAGGDKMDWLIEKAVELGVTALAPLSTARGVVRLS 124

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----PTTLEFLLKNWDHNCQIVFADETC 172
            +     +   +    +A EQC    +P + P       L+ L    D   +++ +    
Sbjct: 125 GERADKRVAHWQGVVRAACEQCGRNRVPAVAPIAELSAWLDALPPAADAELRLMLSPR-- 182

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +  +   L A A    V +LIGPEGG    E++      F   + LG R+LR++TA +A
Sbjct: 183 -ASIAFAALPATAPAGTVTLLIGPEGGLSPAEEDAARKHGFQA-IVLGARVLRTETAGMA 240

Query: 233 AMALVQAICGDW 244
            +A + A  G W
Sbjct: 241 MLAALAARWGGW 252


>gi|52081092|ref|YP_079883.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
           ATCC 14580]
 gi|52786471|ref|YP_092300.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
           ATCC 14580]
 gi|319644950|ref|ZP_07999183.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2]
 gi|52004303|gb|AAU24245.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348973|gb|AAU41607.1| YqeU [Bacillus licheniformis ATCC 14580]
 gi|317392759|gb|EFV73553.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2]
          Length = 255

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 15/225 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           G+  H++A V+RM  GD ++    KDG E   +I  V K        +   +T++  VQ 
Sbjct: 23  GEDVHHIATVMRMSPGDEVICC-AKDGHEAKCRIESVTKEEVLLSVIEWTGETRELPVQI 81

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           +I + + K ++L+++IQK  E+G        A R V+    +      +R       AAE
Sbjct: 82  HIANGLPKGDKLEWIIQKGTELGASSFIPFQASRSVVKLDEKKAKKKRERWAKIAKEAAE 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSLEK--LHAIAHIPNVAI 192
           Q     +P + P  T + LL++ +    C + + + +   E S  +  L +++   +V +
Sbjct: 142 QSHRNAIPDVAPVHTFQRLLESLEDFDKCVVAYEESSKQGETSRFQSVLKSLSEGSSVLM 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG+  EE E L     +    LGPRILR++TA + A+A V
Sbjct: 202 VFGPEGGFTEEEIEALKEKGALA-CGLGPRILRAETAPLYALAAV 245


>gi|291533062|emb|CBL06175.1| RNA methyltransferase, RsmE family [Megamonas hypermegale ART12/1]
          Length = 246

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 121/247 (48%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65
           ++RLF+D   C+       GD   +L + +R++      + + +     +K IS    ++
Sbjct: 1   MRRLFIDE--CLSEDITIKGDDAKHLLYAMRVRPEQVFTIVDKESKVAQAKVISCTSDTV 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQ 118
           + K+         ++ ++ + +    K +++++++QK+VE+G  ++ PV++     +Y +
Sbjct: 59  QLKLLQYIEDADTEAPIEVVVAQCLPKGDKMEFIVQKAVELGAASVVPVVSHHCVVKYDE 118

Query: 119 NTHY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176
                   + +     A +QC     P +    +LE L +++ D+   I +  E    E 
Sbjct: 119 KKKLARQQKWQKIADEAVKQCGRTIKPTVEAIVSLEQLAQDYTDYARFICYEAE---DEQ 175

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S +++   A      ILIGPEGG+  EE +      F + +S+G RILR++TA++AA+ +
Sbjct: 176 SFKEMLQSADSKKYLILIGPEGGFAPEEVQLCKDAGFKS-ISMGKRILRAETASIAALTI 234

Query: 237 VQAICGD 243
           V    GD
Sbjct: 235 VMYEKGD 241


>gi|223985669|ref|ZP_03635717.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM
           12042]
 gi|223962360|gb|EEF66824.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM
           12042]
          Length = 258

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 18/222 (8%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           Q H+L  VLRMKEG+ + + + +   +   +   G+ I+   E     +     +  +  
Sbjct: 43  QRHHLQRVLRMKEGETLRVIDAEGAVFCGVLDGAGQ-IQI-TELLDEDRELPVTLTLVAG 100

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
            IK  R D+++QK  E+G+  I P      V+   +      ++R +     A++QC   
Sbjct: 101 LIKGERWDWLLQKCTELGVSRIVPFQSSRTVVKLESDKVDKKLERWQKIVQEASQQCKRT 160

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---ENSLEKLHAIAHIPNVAILIGPEG 198
             P +  P  L            + + DE          LEK        +V ++IGPEG
Sbjct: 161 QRPQVCAPIELADAGAWRSEQNFVAYEDEALHGGLLSAQLEKGR------SVTLVIGPEG 214

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           G+   E E L +  +    SLG RILR++TAAVAA+ L  A+
Sbjct: 215 GFSPAEIERLQTQGYRC-CSLGKRILRAETAAVAAVCLAGAV 255


>gi|295695881|ref|YP_003589119.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912]
 gi|295411483|gb|ADG05975.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912]
          Length = 247

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 17/215 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G+  H++A V+RM  GD + + +G    W + I  VG   +   +E  S  +  ++ ++ 
Sbjct: 20  GEDAHHIARVMRMVPGDRVEVGDGSGTVWTAVIESVGAGEVHLSLE-DSLEEDGEARLEL 78

Query: 85  IF--SPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH-YNMDRVRTYTISAAE 136
           +      K +++D ++QK+ E+G+  + PV     + RY ++     + R R     AAE
Sbjct: 79  VLLQGLPKHDKMDLIVQKATELGVARVIPVAAARSVVRYQEDQEIRRLQRWRRIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAIL 193
           Q     +P I  P +     + W    Q   A   DE+         L     +  +   
Sbjct: 139 QAKRSRIPEIVQPVSA---AEAWRWAAQADVALIFDESRRGRPLATALAGHPGVGRIFFA 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +GPEGG+   E +   SL  V P+ LGPRILR++T
Sbjct: 196 VGPEGGWDPGEVDDATSL-GVEPVHLGPRILRTET 229


>gi|323527358|ref|YP_004229511.1| hypothetical protein BC1001_3037 [Burkholderia sp. CCGE1001]
 gi|323384360|gb|ADX56451.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1001]
          Length = 246

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 24/254 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R FV  PL      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  + +   
Sbjct: 1   MPRFFVGTPLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRAV 59

Query: 64  --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
              IR   + +     + +  Q I S    +++D++I+K+VE+G  +  P+ T  +    
Sbjct: 60  TVKIREFRDIEVEPPYRLTLAQGIAS---GDKMDWLIEKAVELGASSFVPLTTTRSVVRL 116

Query: 122 YNMDRVRTYT------ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                +R +        ++ EQC    LP + P   +   L       ++   DE     
Sbjct: 117 SGERALRRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLGAMP---RVPAGDELRILL 173

Query: 176 NSLEKLH--AIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +    +H  A+   P    V +L+GPEGG+ + E+       F   + LGPR+LR++TA 
Sbjct: 174 SPRASIHFSALPASPPKGPVTVLVGPEGGFSAAEEAAAMDHGFQA-VGLGPRVLRTETAG 232

Query: 231 VAAMALVQAICGDW 244
           +A ++ + A  G W
Sbjct: 233 IAVLSALAATWGGW 246


>gi|116070640|ref|ZP_01467909.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107]
 gi|116066045|gb|EAU71802.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107]
          Length = 244

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 8/214 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           K   D+ HYL  VLR++ GD + + +G    W +++     +++       +    Q  +
Sbjct: 21  KLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAEL-VDEHTVKTDPTPCEQLVQPQPPL 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               S I+    D +++ + E+G+  I+P+   R      +  DR  T    A EQC+ L
Sbjct: 80  GLAVSIIRRG-FDDVVRMACELGIDTIQPLRCERTVLQAEHRPDRWNTIVREAVEQCERL 138

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEGG 199
             P +    +LE  L +     + V    T   E   + L  IA IP     +++GPEGG
Sbjct: 139 WKPTVLELNSLESWLDS-SSGQKAVGVTRTKKLEPLGDWLEQIA-IPAQTTWLIVGPEGG 196

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           + S E++ LH+   V P+ LGP ILR+ TAAVA 
Sbjct: 197 WTSAERDALHNH-SVAPIHLGPSILRTSTAAVAG 229


>gi|319406724|emb|CBI80357.1| hypothetical protein B11C_100024 [Bartonella sp. 1-1C]
          Length = 97

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%)

Query: 1  MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
          M+ +  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNGKDGEWL+K+ +
Sbjct: 1  MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGKDGEWLAKLLF 60

Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYI 85
          + K + + V Y  R  ++   + +I
Sbjct: 61 IKKKLWWLVLYVKRGCSQYIRIFFI 85


>gi|325662164|ref|ZP_08150782.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471613|gb|EGC74833.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 246

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ + + +G + ++L +I S     +  ++  +  ++ +     
Sbjct: 19  TGSDVNHMKNVLRMKTGEQLEISDGNNKKYLCEIESLEADKVTARILEEQEAENELPSKL 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K+++++ +IQK+VE+G   + PV T+        +      +R    + SAA+
Sbjct: 79  YLFQGLPKSDKMELIIQKAVELGAWEVIPVATKRAVVKLDQKKAAKKRERWSGISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILI 194
           Q     +P I      +  L ++  +  ++    +   G + + E++ AI    +V I I
Sbjct: 139 QAGRNVIPEIKQVMNFQEAL-SYAKSLDVLLIPYELAEGMQATKERIQAIQPGQSVGIFI 197

Query: 195 GPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  EE K  + +  +  P++LG RILR++TA +  ++++
Sbjct: 198 GPEGGFEQEEVKLAMEAGAY--PITLGRRILRTETAGMTMLSVL 239


>gi|318041692|ref|ZP_07973648.1| hypothetical protein SCB01_08267 [Synechococcus sp. CB0101]
          Length = 255

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR-SQTKQSDVQ 83
           S +   YL  VLR   GD   + +G    W +++    ++   +   Q   SQ +     
Sbjct: 27  SAEHSRYLCKVLRYGPGDRFAVVDGAGHLWEAELLDREQARMLQPLAQPLLSQPRDQPAV 86

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILT 142
            + + +     + +++ +VE+G+  + P++   T        +R ++    AAEQC+ L 
Sbjct: 87  VLAAAVVKRDFELVVRMAVELGVDRLVPLLCERTAVQGQLRPERWQSIAEEAAEQCERLW 146

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS------LEKL-HAIAHIPN-VAILI 194
           LP I PPT L  LL   D     V A     +         +E L  + A +P+ V +  
Sbjct: 147 LPQIDPPTPLTELLST-DAATASVAAMRLWATTRQEGLPLLVEALASSAAQLPDQVWLAC 205

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+   E+E      + +P+ LGP ILRS TAAVA  AL+
Sbjct: 206 GPEGGWSPAEEEQALGCGW-SPVQLGPTILRSSTAAVAGAALI 247


>gi|94265595|ref|ZP_01289339.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94269875|ref|ZP_01291589.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451038|gb|EAT01999.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453874|gb|EAT04232.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 241

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++       Q    G    +L  VLR++ GD + LF+G      ++IS  G   R
Sbjct: 1   MRRFFIEPTAITDRQAILQGADARHLRKVLRLQNGDEVELFSGDGLVHQARISG-GAHDR 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTH 121
            ++   + +Q   +D++       +K+ ++D +IQK  E+G+ AI P ++ +T+      
Sbjct: 60  VELAILASNQRPPADLRLHLGQAMLKSKKMDLVIQKCTELGVAAIHPYLSHHTKVPAPEP 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +     + +QC+    P   P  + E  L     +C +      C  + +   L
Sbjct: 120 AKIQRWQKIIRESCKQCNQPWPPVCRPEASFEQALAA-GADCDLRL---LCWEDPTAAPL 175

Query: 182 HAIAH---IP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +A     P ++ +LIGPEGG+ + E E   +  F+T + LG RILR++TAA+A +AL+
Sbjct: 176 REVADRLTTPRSLMVLIGPEGGFSNHEVEAAKAAGFLT-VGLGRRILRAETAAIATIALL 234

Query: 238 QAICGD 243
           Q I  D
Sbjct: 235 QYIFND 240


>gi|296104610|ref|YP_003614756.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059069|gb|ADF63807.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 243

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80
           S D  +++  VLRM  G  I LF+G +  + ++I+   K S+   V   E   R      
Sbjct: 21  SDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKSVHVNVLRGEIDDRESPLHI 80

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134
            +  + S  +  ++++ IQKS+E+G+  I P+ +         +  +  + + +   I+A
Sbjct: 81  HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAIAA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQ     +P I P   LE      +   ++        S N+L        +  V +LI
Sbjct: 139 CEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 194 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 241


>gi|197303723|ref|ZP_03168760.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC
           29176]
 gi|197297243|gb|EDY31806.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC
           29176]
          Length = 249

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 117/240 (48%), Gaps = 10/240 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           ++  F D       + +  G   +++ +VLRMKEG+ + + +G    +L +I  Y G   
Sbjct: 1   MQHFFADRSWVQGDKIRLEGSDVNHMKNVLRMKEGEEVQVSDGTGNAYLCQIEGYEGNQA 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+  ++   T+     ++F  + K ++++ ++QK+VE+G+  I P   + +       
Sbjct: 61  VLKIREKTEKDTELPSKIWLFQGLPKGDKMELIVQKAVELGVYGIVPFAAKRSVVRLDEK 120

Query: 121 HYNMDRVRTYTIS--AAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                ++R   I+  AAEQ     +P +    T  E L    + +  +V  +   G + +
Sbjct: 121 KAGKKQIRWQAIAKGAAEQSGRGLIPEVEIVKTYAEALEFAKELDVILVPYELEEGMKAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  + AI    +V I IGPEGG+  +E     +   V P++LG RILR++TA +  ++++
Sbjct: 181 MSIIEAIRPGQSVGIFIGPEGGFEEQEIGQARNAGAV-PVTLGRRILRTETAGITTLSIL 239


>gi|218680825|ref|ZP_03528722.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894]
          Length = 105

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
           +L +P +  P  L  LL  W    +I++ DE    +N L  L AI    ++A+L+GPEGG
Sbjct: 1   VLGIPEVAEPVKLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-KHLALLVGPEGG 59

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA  GDW
Sbjct: 60  FSEEERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQAAIGDW 104


>gi|116618287|ref|YP_818658.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097134|gb|ABJ62285.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 245

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 35/255 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEG-------DNILLFNGKDGEWLSKIS 59
           ++R F++ P+    +  A  D + +   VLR + G       +N+ +  G+    ++ I 
Sbjct: 1   MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGE----VTLID 56

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVIT 114
           Y   +I+    Y S  +    DV  + SP+K +R D+ IQK+ E+G+  I     +  + 
Sbjct: 57  YEVMNIKVIDRYYSNVELP-IDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVA 115

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFA 168
            + +     + R      +AAEQ   L +P        E +   W +  Q      +V  
Sbjct: 116 DWRKQQEKKVKRFNKIAQAAAEQAHRLVVP--------EIIFTTWQNTIQMPKNTGLVAW 167

Query: 169 DETCGSENSLEKLHAIAHIPNVAILI---GPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           +E+     S   + A++ +P+   LI   GPEGG    E E L    F     LGPRILR
Sbjct: 168 EESARDGESAALIAAVSAVPSGEKLICVFGPEGGLTENEIEELRLQNFELA-GLGPRILR 226

Query: 226 SDTAAVAAMALVQAI 240
           ++TA + AM+ +  +
Sbjct: 227 AETAPLYAMSAISVL 241


>gi|229543807|ref|ZP_04432866.1| protein of unknown function DUF558 [Bacillus coagulans 36D1]
 gi|229324946|gb|EEN90622.1| protein of unknown function DUF558 [Bacillus coagulans 36D1]
          Length = 250

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 15/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R F+D P   + + + SG+ YH++A V+RM  G         +   + +I  + G ++
Sbjct: 1   MQRYFLDRPYRGEQEIRLSGENYHHIARVMRMSVGSRFYGVFSDEKVCICEIGEITGDAV 60

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQ 118
             ++  +++  +     V       K ++L+++IQK  E+G        A R V+   T+
Sbjct: 61  VARITGWETAVKELPVHVTVSCGLPKADKLEWIIQKGTELGAFQFLPFLAERSVVKWDTK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSE 175
                 +R +     AAEQ     LP I PP + + L++   H  Q   + F +     E
Sbjct: 121 KEAKKRERWQKIAQEAAEQSHRSHLPEISPPVSFQQLIEE-SHTYQYKLVAFEENAKEGE 179

Query: 176 NS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                E L  ++   NV  + GPEGG   +E   L +  FV+   LGPRILR++TA +  
Sbjct: 180 QHRFAELLSNMSEGGNVLAVFGPEGGLSLDEIRRLEAAGFVS-CGLGPRILRAETAPLYV 238

Query: 234 MALV 237
           ++ +
Sbjct: 239 LSAI 242


>gi|110598135|ref|ZP_01386413.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340267|gb|EAT58764.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 247

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 15/220 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYI 85
           D++H+LA VLR ++G  IL+ +G      ++IS VGK S+  ++         ++ V   
Sbjct: 23  DEFHHLARVLRKQKGAVILVTDGNGIRCEARISEVGKSSLEAEILDHRLVGEPKTGVTVA 82

Query: 86  FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
            S +K   R ++ ++K+ E+G+ +I P+IT  T      +     + R +T  +SAA Q 
Sbjct: 83  LSMLKNPQRFEWFLEKATELGVSSIIPMITARTLAQPSKERVQGRLKRWKTIVLSAARQS 142

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               LP +  P T   +     ++ +++        E S E             +IG EG
Sbjct: 143 KRYHLPALSEPLTFAQVSALEGYDLRLI------PYEASEEAPKVEFAGKKALFMIGGEG 196

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           G+   E E   +  F   +SLG  ILR++TA + A+ALV+
Sbjct: 197 GFTDSEVEKAKTAGFC-EISLGRTILRAETAGIFAVALVR 235


>gi|291522746|emb|CBK81039.1| RNA methyltransferase, RsmE family [Coprococcus catus GD/7]
          Length = 246

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 117/222 (52%), Gaps = 10/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRM  G+ + + +G+  ++  +I+ + K  +R  +     S  +     
Sbjct: 19  TGTDVNHIRNVLRMTPGEEVTVSDGQGMDYFCRIAELTKEEVRLDIVDSWHSFVELPTKI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI--SAAE 136
           Y+F  + K ++++ +IQK+VE+G+  I PV T+              R+R  +I  SAA+
Sbjct: 79  YLFQGLPKADKMELIIQKAVELGVYEIVPVATKRAVVKLDPKKEEKKRLRWQSIAESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P I    + E  L+  +  +  ++  ++  G +++ +++ A+    ++ I IG
Sbjct: 139 QAGRALIPQIATCISFEKALRMCNGLDAALIPYEKAEGMQHARDQVRALHGKHSIGIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+   E E   +   + P++LG RILR++TA +  ++++
Sbjct: 199 PEGGFEESEIEAARAAGAI-PITLGHRILRTETAGLTMLSIL 239


>gi|295092931|emb|CBK82022.1| RNA methyltransferase, RsmE family [Coprococcus sp. ART55/1]
          Length = 252

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 41/258 (15%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           + R FVD     I T    +G   +++ +VLR+K G  I + NG+  ++   IS +G+  
Sbjct: 1   MNRFFVDVDGRDIGTDISITGGDVNHIKNVLRLKVGQEITVSNGRGRDYTCSISELGRDE 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-----------KTNRLDYMIQKSVEMGMGAIRPVI 113
           +   VE          DV   F+ +           K++++D ++QK VE+G+  I PV 
Sbjct: 61  VLCHVE----------DVNDNFAELPVEVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVF 110

Query: 114 TRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE---FLLKNWDHNCQ 164
           T  T      +      +R R    SAA+Q     +P I  P T      + K  D N  
Sbjct: 111 TARTIVKLDAKKAAKKTERCRIIAESAAKQSGRGIVPEITEPVTFAQAIEMAKTLDMN-- 168

Query: 165 IVFADETCGSENSLEKLHAIAHIPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSL 219
           I+  +E  G   S  ++ A    P+ A     + IGPEGG+  EE E   +      ++L
Sbjct: 169 IIPYEEAEGLAKS-RQIIADVTAPSSARRSLGVFIGPEGGFAREEVEQAMAAG-AECITL 226

Query: 220 GPRILRSDTAAVAAMALV 237
           G RILR++TA +A M+++
Sbjct: 227 GHRILRTETAGLAVMSII 244


>gi|331085961|ref|ZP_08335044.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406884|gb|EGG86389.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 246

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 118/225 (52%), Gaps = 16/225 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRM+ G+ + + +G + ++L +I S     +  ++  +  ++ +     
Sbjct: 19  TGSDVNHMKNVLRMRTGEQLEISDGNNKKYLCEIESLEADKVTARILEEREAENELPSKL 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K+++++ +IQK+VE+G+  + PV T+        +      +R    + SAA+
Sbjct: 79  YLFQGLPKSDKMELIIQKAVELGVWEVIPVATKRAVVKLDQKKAAKKRERWSGISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           Q     +P I      +  L   K+ D    ++  +   G + + E++ AI    +V I 
Sbjct: 139 QAGRNVIPEIKQVMNFQEALSYAKSLD--VLLIPYELAEGMQATKERIQAIQPGQSVGIF 196

Query: 194 IGPEGGYHSEE-KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           IGPEGG+  EE K  + +  +  P++LG RILR++TA +  ++++
Sbjct: 197 IGPEGGFEQEEVKLAMEAGAY--PITLGRRILRTETAGMTMLSVL 239


>gi|163857938|ref|YP_001632236.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella petrii DSM
           12804]
 gi|163261666|emb|CAP43968.1| conserved hypothetical protein [Bordetella petrii]
          Length = 243

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 10/228 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F D PL    +        H+   VLR++ G  I+LFNG  GE+ + +   GK   
Sbjct: 3   LPRFFCDTPLSPGVRLPLPTALAHHAVRVLRLRAGAAIVLFNGGGGEYPATLEIEGKDAW 62

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123
            ++ ++  R       +  +      +++D++++K+VE+G   + P+  + +  Q +   
Sbjct: 63  ARLGDFDPRDAELAGRIVLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGAR 122

Query: 124 MDRVRTY----TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +++   +      +A+EQC    L  +  P TL   L       +++   E    +   +
Sbjct: 123 LEKRVAHWARIAQAASEQCGRNRLMAVDAPATLRDWLDQPADGLRLLCHPEA--GQGLAD 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            L A   +  +++L+GPEGG+ S+ +  L +   V  +  GPR+LR++
Sbjct: 181 ALAAQPGLRQLSLLVGPEGGW-SDAELALAAERGVQAVRYGPRVLRTE 227


>gi|225387763|ref|ZP_03757527.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme
           DSM 15981]
 gi|225046138|gb|EEG56384.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme
           DSM 15981]
          Length = 247

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 10/235 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            FV+       Q + +G   +++ +VLRM+ G+  L+  G +    +  S   +S+  ++
Sbjct: 4   FFVEPEQIRDGQVRITGPDVNHMKNVLRMRPGEEFLVSGGGNDLLCAVESLDVQSVGARI 63

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYN 123
             +  S+   + +       K+++++ +IQK+VE+G   I PV T+        +     
Sbjct: 64  LGEQPSRELPAGIWLFQGLPKSDKMELIIQKAVELGAAGIIPVATKNAVVKLDAKKEESR 123

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN---CQIVFADETCGSENSLEK 180
           + R +    SAA+Q     +P I    + +  +   D +    +++  +   G E + E 
Sbjct: 124 LRRWQAIAESAAKQSKRSLVPEIGRVLSFKEAVARMDRDGFDLRLLPYENERGMEATREA 183

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              +     +A+ IGPEGG+   E     S   + P+SLG RILR++TA +A +A
Sbjct: 184 FTRVREAKRIAVFIGPEGGFDETEVNLARSAD-ILPVSLGKRILRTETAGLAVLA 237


>gi|302785802|ref|XP_002974672.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii]
 gi|300157567|gb|EFJ24192.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii]
          Length = 255

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 3   IHSHLKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           + + L R + D  P    T  +  G ++ ++  VLR+ +   + LFNG+ G   + +S V
Sbjct: 1   MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKVLRLGQDQRVELFNGRGGIVTAAVSAV 60

Query: 62  GKSIRFKVEYQSRS------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
            +S    V  +          ++   +   F+ +K  R D+M++K  E+G   + P+ T 
Sbjct: 61  RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120

Query: 116 YTQNTHYNMD-RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            +     N   R +   ++A +QC  L    +     +  L      N +    D T G+
Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRQSLNISSLKSQVLKNNE----DTTAGA 176

Query: 175 ENSLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              +E  + +   I    +++GPEG +  EEK  L +   + P+ LGPR LR +TAA+A 
Sbjct: 177 TEIVEVFNDSSKDIRGGTLIVGPEGDFTDEEKYDLVAAGAM-PVGLGPRRLRVETAAIAM 235

Query: 234 MALVQAI 240
           +A V  +
Sbjct: 236 LATVMLV 242


>gi|194017737|ref|ZP_03056347.1| protein YqeU [Bacillus pumilus ATCC 7061]
 gi|194010637|gb|EDW20209.1| protein YqeU [Bacillus pumilus ATCC 7061]
          Length = 256

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 18/247 (7%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F+D     +  K     +G+  H+L++V+RMK G  IL       E LSKI  + K
Sbjct: 1   MQRYFIDLTKEEVIAKGSIVINGEDVHHLSNVMRMKAGQEILCLTTDGFEGLSKIDTITK 60

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPV-----ITR 115
             +   VE  + +Q ++  V+   +    K ++L+ +IQK  E+G  A  P      IT+
Sbjct: 61  EEVICHVEGWT-NQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITK 119

Query: 116 YTQ-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETC 172
             Q  +H   +R       AAEQ     +P + P +T + L  L      C + + + + 
Sbjct: 120 IDQKKSHKKRERWEKIAKEAAEQSYRNIIPRVDPVSTFKELTQLAGEFDKCVVAYEESSK 179

Query: 173 GSENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             E S  +  L  +     + ++ GPEGG   +E E L +   V    LGPRILR++TA 
Sbjct: 180 EGEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETHGAVI-CGLGPRILRTETAP 238

Query: 231 VAAMALV 237
           + A++ +
Sbjct: 239 LYALSAI 245


>gi|288550384|ref|ZP_05970221.2| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC
           35316]
 gi|288314998|gb|EFC53936.1| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC
           35316]
          Length = 248

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV---EYQSRSQTKQS 80
           S D  +++  VLRM  G  I LF+G +  + ++I+   K S+   V   E   R      
Sbjct: 26  SDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKSVHVNVLRGEVDDRESPLHI 85

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISA 134
            +  + S  +  ++++ IQKS+E+G+  I P+ +         +  +  + + +   ++A
Sbjct: 86  HLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDAERLNKKIQQWQKIAVAA 143

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQ     +P I P   LE      +   ++        S N+L        +  V +LI
Sbjct: 144 CEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINTLP-----LPVERVRLLI 198

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 199 GPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 246


>gi|229098782|ref|ZP_04229720.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29]
 gi|228684626|gb|EEL38566.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29]
          Length = 249

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD+I    NGK     + +I+  +V 
Sbjct: 1   MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETC--G 173
            +     ++R+R     AAEQ     +P ++ P + + LL  + +++  +V  +E    G
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQG 177

Query: 174 SENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +++  K L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA + 
Sbjct: 178 EKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|317970157|ref|ZP_07971547.1| hypothetical protein SCB02_11506 [Synechococcus sp. CB0205]
          Length = 248

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 17/240 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL-----SKISY 60
            L+RL +  P  + +Q   + ++  YL  VLR   GD   + NG+   W      S  + 
Sbjct: 4   ELRRLLIA-PERLASQIALTREEERYLTRVLRFSAGDRFAVVNGQGALWTAVLRQSACAE 62

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQ 118
           + +S+   +E+Q          Q + +     R  + +++ +VE+G+    P++  R   
Sbjct: 63  LEQSLEAPLEHQPAPAP-----QLVLAAAVVKRDFEVVLRMAVELGVDRFIPLLCERTVV 117

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R+    AAEQC+ L  P I  P  +  LL   D      +A         L
Sbjct: 118 QGSLRLERWRSIAAEAAEQCERLWSPRIEEPMDVHQLLGLRDSAVPGFWATTRQQELPLL 177

Query: 179 EKLHA---IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             + A   +  + ++ +  GPEGG+   E++   +  +  P+ LGPRILRS TA V+ ++
Sbjct: 178 ASVLADQPLERLSSLWLACGPEGGWSPSEEQAAEAAGW-KPVDLGPRILRSSTACVSGLS 236


>gi|295102912|emb|CBL00457.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           L2-6]
          Length = 247

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQS-DVQ 83
           G   H+L+ V+R + GD ++L +G   E+ + I+  G +++ F VE    S  + + DV 
Sbjct: 19  GADAHHLSRVMRGRLGDTVILCDGSAVEYTATITGFGDETVEFSVEPGCPSAAEPTVDVT 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139
            +    K ++L+ +I+  VE+G     P  +RY     +      +R       AA+QC 
Sbjct: 79  LLVGYPKQDKLEQVIRHGVELGCDHFIPFFSRYCVAAPKKEEQKNERYNRIAFEAAKQCG 138

Query: 140 ILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAIL 193
              LP +  P      + ++ D    ++F  E  G+   L +L A A   +     +AI+
Sbjct: 139 RGILPDVALPLPNFGAVCRSLDQYDLVLFCYECGGA--PLRQLLAEATPADGEKLKIAII 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            G EGG+ +EE E        T + LGPRILR +TA +A ++ V  + G+ 
Sbjct: 197 TGAEGGFAAEEAEMAAKAGAKT-VGLGPRILRCETAPLAVVSAVMTLTGNL 246


>gi|255562222|ref|XP_002522119.1| conserved hypothetical protein [Ricinus communis]
 gi|223538718|gb|EEF40319.1| conserved hypothetical protein [Ricinus communis]
          Length = 290

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 10/219 (4%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78
           +  GD++ ++  VLR+   D I LFNGK       I  + ++ + F      +    QT 
Sbjct: 62  RVQGDEFWHIVKVLRLSISDRIELFNGKGALVEGCIERIDRTGLDFVAVNDPKIVLPQTI 121

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
           +  V   F  +K  R D++++K  E+G  ++ P++T  + +   N +DR+    ++A +Q
Sbjct: 122 KWHVFAAFGSLKGGRADWLVEKCTELGAHSVTPLLTERSPSISDNRVDRLERVILAATKQ 181

Query: 138 CDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           C  L    + PPT +E LL    D     + A E     N L      +   +  I++GP
Sbjct: 182 CQRLHEMVLNPPTKVEGLLPLIADSKLSFLAAAEATPVVNVLASSRKES---SGLIIVGP 238

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EG + +E +  L      T + LGP  LR +TA +A + 
Sbjct: 239 EGDF-TEREAALMMEAGATAVGLGPLRLRVETATMALLG 276


>gi|294501300|ref|YP_003565000.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium QM B1551]
 gi|294351237|gb|ADE71566.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium QM B1551]
          Length = 250

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQY 84
           D  H+++ V+RM EG   +  N +    L KI  +    ++   +E+ S  +     V  
Sbjct: 21  DDAHHISRVMRMNEGSQFIACNEQGQAALCKIENISANEVKASIIEWISEEKELPVHVTI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           +    K ++L+ +IQK  E+G        A R V+    + +   +DR       AAEQ 
Sbjct: 81  VNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDKKSQKKLDRWNKIAKEAAEQS 140

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIP--NVAILI 194
               +P +  P + + L++        V A E    +     LHA+  A  P  +V +++
Sbjct: 141 HRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGETSHLHAVLSALKPGNSVLVVV 200

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG   +E E L    F T    GPRILR++TA + A++ +
Sbjct: 201 GPEGGLTEQEVEVLEENEF-TISGFGPRILRAETAPLYALSAI 242


>gi|33592148|ref|NP_879792.1| hypothetical protein BP0998 [Bordetella pertussis Tohama I]
 gi|33571792|emb|CAE41299.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381564|gb|AEE66411.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS]
          Length = 246

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSP 88
           H+   VLR++ G  ++LF+G  GE+ + +   GK+   ++  +  R       +  +   
Sbjct: 26  HHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGL 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
              +++D++++K+VE+G   + P+  + +            +   +    +AAEQC    
Sbjct: 86  PAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNR 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGG 199
           L  +  P  L   L         +     C  E  L+   A+A      ++ +L+GPEGG
Sbjct: 146 LMAVDAPQALAAWLAQAPGAALRLL----CHPEAELDLAGALARHAAHDDICLLVGPEGG 201

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +  EE E   +   V  +  GPR+LR++TA +A +A V AI G
Sbjct: 202 WSDEELEQARAA-GVQAVRFGPRVLRTETAGIALIAAVSAIRG 243


>gi|121606961|ref|YP_984290.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas
           naphthalenivorans CJ2]
 gi|120595930|gb|ABM39369.1| protein of unknown function DUF558 [Polaromonas naphthalenivorans
           CJ2]
          Length = 250

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 114/237 (48%), Gaps = 21/237 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK---DGEWLSKISYVGKS- 64
           R + D  L   T   +  +Q      VLR++ G+ I LFNG+   +GE+ + +  +G+S 
Sbjct: 4   RFYADVALAAGTS-ISLPEQTARHVQVLRLQPGERITLFNGRGDTEGEFDATVERMGRSD 62

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   +  + + ++     +  +      +R+D++I+K+ E+G  +I+PV++  +      
Sbjct: 63  VDVTIGAWTATAREAARTIHLVVGMPANDRMDWLIEKATELGAASIQPVMSERSVLRLKA 122

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDH------NCQIVFADE 170
           +     +   R   I+++EQC    +P I+   TL E+L K+         N   +    
Sbjct: 123 ERADKKVAHWRGIAIASSEQCGRNRVPLIHDVATLGEWLKKSTAETGAAASNGMRLLLSL 182

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
             GS    E + + A + +   L GPEGG    E+    +  F +P++LGPR+LR++
Sbjct: 183 QDGSRPLAEAVASTA-LASFTFLNGPEGGLSPAEEAAALACGF-SPVTLGPRVLRAE 237


>gi|196231634|ref|ZP_03130492.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428]
 gi|196224487|gb|EDY18999.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428]
          Length = 249

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 16/225 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G+ +H L  VLRMK GD   LFNG+  E   +I+ V K  +  ++  S S+++    Q +
Sbjct: 21  GETHHAL-DVLRMKAGDRATLFNGQGAEATVEIASVDKG-KIALKKISVSKSEPIGCQIV 78

Query: 86  FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
                 K   +D +++K+ E+G   I P+++  T             ++ +   I AA+Q
Sbjct: 79  LGQAIPKGKNMDLIVEKATELGAAGIVPLLSERTVVRCDEGEALAKREKWQRVAIEAAKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-----HIPNVAI 192
           C    LP ++ P + +   ++ +    ++ A     S +  E L             V +
Sbjct: 139 CGQNWLPTVFKPQSPKDFFQSGEKFDLMLIASLQPDSRHVKEVLAEAGASGKKKPARVLV 198

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+GPEG +   E   L       P++LGP ILRS+TAA+  ++++
Sbjct: 199 LVGPEGDFTPAEV-NLAKNAGCRPVTLGPIILRSETAAIYCLSVL 242


>gi|91790687|ref|YP_551639.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas sp. JS666]
 gi|91699912|gb|ABE46741.1| protein of unknown function DUF558 [Polaromonas sp. JS666]
          Length = 260

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 25/230 (10%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGE-------WLSKISYVGKS-IRFKV-EYQSRSQT 77
           DQ      VLR++ GD+I LFNG           + + I ++G+S +R  V  Y +  + 
Sbjct: 21  DQTARHVQVLRLQPGDHITLFNGAGEGGGIGEGEFDATIEHMGRSDVRAMVGAYTATRRE 80

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131
               V          R+D++I+K+ E+G  +I+P+++  +      +     +   R   
Sbjct: 81  TDRAVHLALGMPANERMDWLIEKATELGAASIQPLMSERSVLRIKGERADKKLAHWRGVA 140

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD--ETCGSE-------NSLEKLH 182
           ++A EQC    LP I     L   LK        V  D  E  G+         +     
Sbjct: 141 VAACEQCGRNRLPAIREVMGLGDWLKAQAGQTAGVTQDSAEAVGTRLLLSLQAGTRPLAQ 200

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           A+A+   +  L GPEGG    E+    +  FV P++LGPR+LR++TA +A
Sbjct: 201 AVANTGALTFLSGPEGGLSPAEEAAAIACGFV-PVTLGPRVLRAETAPLA 249


>gi|149198581|ref|ZP_01875625.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155]
 gi|149138296|gb|EDM26705.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 20/230 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +++ F D    +    K    +  ++   LRMKEGD +LL NG+     +KI+ + G++ 
Sbjct: 1   MRKFFCDELFEVGQLVKIDKTESRHILQTLRMKEGDELLLMNGEGLLADAKIAKIEGRNN 60

Query: 66  RF----KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            F    +V +  R + K   +    +P     L  +++++VE+G+ ++  +  +Y+ +  
Sbjct: 61  LFCELLQVTHAPRPKLK---ISLFVAPPSNGTLALILKQAVELGVHSVYLMACQYSVSKS 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLE--FLLKNWDHNCQIVFADETCGSENSLE 179
                V+   ISAA+Q     LP +    T +    L   ++    V +D+    ENS  
Sbjct: 118 KKEKNVQAELISAAKQSGNPYLPKVLSGLTFKEALALAPANNFYGAVPSDDFSAPENS-- 175

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                  I    + IGPEGG+   E + +  LP   PL++GP ILR +TA
Sbjct: 176 -------IGEAGVWIGPEGGFSDSELQEIQKLP-ACPLAIGPYILRVETA 217


>gi|77920669|ref|YP_358484.1| hypothetical protein Pcar_3079 [Pelobacter carbinolicus DSM 2380]
 gi|77546752|gb|ABA90314.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 244

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 25/223 (11%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           VLR+  G  ILL +G       +I ++  KS    V  +   Q     V+ + +  K ++
Sbjct: 28  VLRLARGAEILLLDGLGNLCHCRIDHLDRKSGSAMVLSRCTQQETAFPVELMQALPKADK 87

Query: 94  LDYMIQKSVEMGMGAIRPVIT----------RYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           ++ ++QK  E+G+    P+ T          R TQ     +  +R     AA QC    L
Sbjct: 88  MELVLQKGTELGITGFTPLQTSRSVPRLKPERETQRHQRWLRIIR----EAARQCRRPLL 143

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIP-NVAILIGPEGGY 200
           P +     L+  L       +++  +E  GS+     L A+    IP   A+LIGPEGG+
Sbjct: 144 PSLAAIRPLDEALGQCRSELRLMLWEE--GSQ----PLDAVLPERIPAGAAVLIGPEGGF 197

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             EE ET     FV P+  GPRILRS+TA  AA  ++Q   GD
Sbjct: 198 SREEAETARQHGFV-PVLFGPRILRSETAGFAAATILQYRYGD 239


>gi|227824690|ref|ZP_03989522.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905189|gb|EEH91107.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 247

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 16/245 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F+  P     +   +G   H++ HVLRMK GD + + +      + KI+   K     
Sbjct: 6   RFFLGKPFADTLE--VTGQDAHHMGHVLRMKVGDEVQIVSLDQIAAVMKITAFSKDAVTL 63

Query: 69  VEYQSRSQTKQSDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN- 119
              +   +  +  V+   Y   P K ++++++IQK++E+G+  I+PV     + R  +  
Sbjct: 64  ETVRILEENHEPTVRVTLYQGLP-KQDKMEWIIQKAIELGISEIQPVSMAHCVVRLDEGK 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T   ++R +    +AA+Q     +P I  P  +   L + + + +++  +     E SL 
Sbjct: 123 TAKKLERWQKIAEAAAKQSKRDIVPVIKAPLPVALALTSCEADLKLMAYE--VEEEGSLR 180

Query: 180 K-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L       ++A+LIGPEGG   +E +   +  + + +SLGPRILR++TAA+AA+A +Q
Sbjct: 181 RTLQKTPDAKSIALLIGPEGGISGDEFDLAAAHDWQS-VSLGPRILRTETAALAALAAIQ 239

Query: 239 AICGD 243
              G+
Sbjct: 240 YETGN 244


>gi|218678184|ref|ZP_03526081.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894]
          Length = 105

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 1  MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
          M+ +  ++RLFVD PL      +AS DQ++YLA+VLRM+ G  ILLFNG+DGEW + +++
Sbjct: 1  MRANFRMQRLFVDAPLSAGAALEASADQFNYLANVLRMEAGAEILLFNGRDGEWKATLTF 60

Query: 61 -VGKSIRFKVEYQSRSQ 76
             K I+     ++R Q
Sbjct: 61 PTRKRIQLTATEETRPQ 77


>gi|77965940|gb|ABB07320.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia sp. 383]
          Length = 262

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 15  AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARL------ 67

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 68  ----VEIDKRSALAQIDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P + P       L       
Sbjct: 121 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAP 180

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 181 ADGELRLLLSPRASIPFTSLPDAPPAA---TVTLLIGPEGGLSPDEENAARARGF-TALS 236

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 237 LGPRVLRTETAGAAVLAALAARWGGW 262


>gi|291549888|emb|CBL26150.1| RNA methyltransferase, RsmE family [Ruminococcus torques L2-14]
          Length = 255

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 117/242 (48%), Gaps = 14/242 (5%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKS 64
           ++  F D P C+   Q + +G   +++ +VLRMK G+ + + +G+  ++   +  Y  K 
Sbjct: 1   MQHFFAD-PSCVDGEQIRLAGSDVNHMKNVLRMKPGEEVWVSDGEGMDYFCSVEGYEEKE 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYT 117
              +V  +  SQT+ +    +F  + K +++++++QK+VE+G        A R V+    
Sbjct: 60  AVLRVVKKEVSQTELASRLILFQGLPKGDKMEWIVQKAVELGAYRIVPFAAKRSVVKLDQ 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSE 175
           +      +R +     AAEQ     +P +    + +  + N+     +V    +   G +
Sbjct: 120 KKAGKKRERWQAIAKGAAEQSKRGIVPQVQDVMSFQEAM-NYAKELDVVLVPYELQEGMK 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +   +  I    +V I IGPEGG+   E E       + P++LG RILR++TA +  ++
Sbjct: 179 ATEAVISKIEPGQSVGIFIGPEGGFDESEIEQAKEAGAI-PITLGKRILRTETAGLTTLS 237

Query: 236 LV 237
           ++
Sbjct: 238 IL 239


>gi|71909198|ref|YP_286785.1| hypothetical protein Daro_3586 [Dechloromonas aromatica RCB]
 gi|71848819|gb|AAZ48315.1| 16S rRNA m(3)U-1498 methyltransferase [Dechloromonas aromatica RCB]
          Length = 245

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 22/227 (9%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-----EYQSRSQTKQSDVQY 84
            +   VLR+  G  ++LF+G+ GE+ + I  + +   F V     E +  S+   + VQ 
Sbjct: 26  RHAVRVLRLPPGAPMVLFDGRGGEYPAHIERIERDRVFAVLGAWCEIECESRLAITLVQA 85

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
           + +    +++D+ IQK+VE+G+  I PV +R +      +     +   +    SA EQC
Sbjct: 86  LQA---GDKMDFTIQKAVELGVRDIVPVESRRSVIRLAGERAAKRVAHWQGVAASACEQC 142

Query: 139 DILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
               +P + P   LE  L    H   +++ A +   +E++L  +  +     V +LIG E
Sbjct: 143 GRNQVPLVAPLEKLEHWLARPSHGELRLMLAPD---AEDTLASIRPVGQ---VQLLIGAE 196

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG   +E        F   + LGPR+LR++TA +AA+A +QA+ GD+
Sbjct: 197 GGLDPQEVMAARQAGFQA-VRLGPRVLRTETAGLAALAALQALWGDF 242


>gi|323141893|ref|ZP_08076754.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT
           12067]
 gi|322413640|gb|EFY04498.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT
           12067]
          Length = 247

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 113/228 (49%), Gaps = 11/228 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G    +++ VLRM+ G  + + +      L++IS +          +  +++ +  V+ I
Sbjct: 18  GVDARHISKVLRMQPGAQLQIVSDDGVSALAEISAIDSECVTVHCLEKLAESHEPAVRLI 77

Query: 86  FSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
            +    K  +++++IQK+VEMG  ++ PV   ++            ++R +    SAA+Q
Sbjct: 78  LAQGLAKGEKMEFIIQKAVEMGAYSVVPVAMEHSVVRLDGAKAAKKVERWQKIAESAAKQ 137

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSLEKLHAIAHIPNVAILIG 195
                +P + P  T+  +L   D   +I+    ++    + +L++  A   + ++ ++IG
Sbjct: 138 SKRDIIPEVQPVQTMAQMLAANDCATKIIAYECEDKKSLKAALKEAQAKGALTDLLLIIG 197

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG    E ET  +   V P+SLG RILR++TA + A++ +    GD
Sbjct: 198 PEGGISEAELETARAAGAV-PVSLGRRILRAETAGLVAISAIFYETGD 244


>gi|229104942|ref|ZP_04235598.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28]
 gi|228678436|gb|EEL32657.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28]
          Length = 249

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 18/243 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD+I    NGK     + +I+  +V 
Sbjct: 1   MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFVE 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETC--G 173
            +     ++R+R     AAEQ     +P ++ P + + LL  + +++  +V  +E    G
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQG 177

Query: 174 SENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +++  K L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA + 
Sbjct: 178 EKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLY 236

Query: 233 AMA 235
           A++
Sbjct: 237 ALS 239


>gi|229260091|ref|YP_367964.2| hypothetical protein Bcep18194_A3719 [Burkholderia sp. 383]
          Length = 255

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEIDKRSALAQIDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P + P       L       
Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAP 173

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 174 ADGELRLLLSPRASIPFTSLPDAPPAA---TVTLLIGPEGGLSPDEENAARARGF-TALS 229

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255


>gi|160901468|ref|YP_001567050.1| 16S ribosomal RNA methyltransferase RsmE [Delftia acidovorans
           SPH-1]
 gi|160367052|gb|ABX38665.1| protein of unknown function DUF558 [Delftia acidovorans SPH-1]
          Length = 250

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 19/210 (9%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQSDVQ--YIF 86
            VLR++ GD I LF G+ GE  S   +    +R       V   +    ++  ++  ++ 
Sbjct: 27  QVLRLQPGDGITLFEGRAGEGFSGGEFEATVLRMGRSDVAVRIGAHHAVEREPLRPVHLL 86

Query: 87  SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
           + I  N R+D++++K+ E+G  +I P++   +      +     +   +   +SA EQC 
Sbjct: 87  AGITANERMDWLVEKAAELGAASITPLVAERSVLKLKGERAEKKLAHWQAVAVSACEQCT 146

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQI----VFADETCGSENSLEKLHAIAHIPNVAILIG 195
              +P ++ P  LE  L++           +      G+    E L A A    V  L G
Sbjct: 147 RNRVPPLHTPADLEDWLESGAQQLPPGTLRLLLSLGEGTRPLGEVLDATAEDAPVVFLSG 206

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           PEGG    E+    +  FV P++LGPR+LR
Sbjct: 207 PEGGLSPAEEALARAQGFV-PVTLGPRVLR 235


>gi|302671977|ref|YP_003831937.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316]
 gi|302396450|gb|ADL35355.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316]
          Length = 250

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 115/231 (49%), Gaps = 29/231 (12%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE------------YQ 72
           +G+ Y+++A+VLRM++G+   +    D E        GK I +++E            + 
Sbjct: 21  TGNDYNHIANVLRMQKGEQFSVSIRDDDE--------GKEIFYEIEDITDSSVIGHLCFI 72

Query: 73  SRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMD 125
            +   +     Y+F  + K ++++ +IQK+VE+G   I P+ T+        +     + 
Sbjct: 73  EKVGNELPSKIYLFQGLPKVDKMELIIQKAVELGAFQIVPMSTKRCVVKLDDKKAENKIK 132

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAI 184
           R +  + +AA+Q     +P +  P T++  ++   D + +I+  +   G E +   +  I
Sbjct: 133 RWQAISEAAAKQSKRAIIPEVTMPMTMKQAVEFAKDMDVKIIPYENAKGIEETKRIIENI 192

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               N+A+ IGPEGG+ SE++  L     + P++LG RILR++TA    ++
Sbjct: 193 KPGQNIAVFIGPEGGF-SEQEIDLCRENDIMPITLGKRILRTETAGFTIIS 242


>gi|89899025|ref|YP_521496.1| 16S ribosomal RNA methyltransferase RsmE [Rhodoferax ferrireducens
           T118]
 gi|89343762|gb|ABD67965.1| protein of unknown function DUF558 [Rhodoferax ferrireducens T118]
          Length = 260

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 32/225 (14%)

Query: 34  HVLRMKEGDNILLFNG------------KDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQ 79
            VLR++ GD+I LFNG            + GE+ + ++ +G+S ++ KV  Y +  +   
Sbjct: 27  QVLRLQPGDSITLFNGGPGWDERDSEHTQGGEFEASVTRMGRSDVQVKVGAYHAVEREAA 86

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTI 132
             V          R+D++++K+ E+G+ +I+P++T  +     N +R        ++  +
Sbjct: 87  HRVHLAVGMPANERMDWLVEKATELGVASIQPLMTERS-VLRLNPERAGKKQAHWQSVAV 145

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSENSLEKLHAIA----- 185
           +A EQC    +P I+   TL   +K        Q +      G+++    + A A     
Sbjct: 146 AACEQCGGNRVPVIHAVMTLAAWIKAQPAQASDQRLLLSLRPGAQSVRAAVKAFADPASA 205

Query: 186 --HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             H   +  L GPEGG    E++   +  F  P++LG R+LR++T
Sbjct: 206 GAHTEAITFLSGPEGGLSPAEEDIALACGF-APVTLGARVLRAET 249


>gi|167571263|ref|ZP_02364137.1| hypothetical protein BoklC_15582 [Burkholderia oklahomensis C6786]
          Length = 253

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 54/271 (19%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK------- 57
           S + R FVD  L          D   ++  VLR+  GD + LFNG  G++ ++       
Sbjct: 6   SAIPRFFVDAELQSDATLALPADVARHV-QVLRLAAGDAVTLFNGAGGQYRAEFVELDKR 64

Query: 58  --ISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP---- 111
             +  +G      VE   R    Q            +++D++I+K+VE+G  AI P    
Sbjct: 65  AALVRIGAFTPADVEAPYRITLAQGIA-------GGDKMDWLIEKAVELGAAAIAPLSTA 117

Query: 112 --VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----------------PTTLE 153
             V+    +     +   +    ++ EQC    +P + P                P  L 
Sbjct: 118 RGVVRLSGERAQKRVAHWQGVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELR 177

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
            +L        + FAD           L  +     V +LIGPEGG   +E+E      F
Sbjct: 178 LMLS---PRASVGFAD-----------LPGMPPAGGVTLLIGPEGGLAPDEEEAARERGF 223

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + L LGPR+LR++TA +A +A + A  G W
Sbjct: 224 ASIL-LGPRVLRTETAGIAMLAALAARWGGW 253


>gi|239827772|ref|YP_002950396.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. WCH70]
 gi|239808065|gb|ACS25130.1| protein of unknown function DUF558 [Geobacillus sp. WCH70]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84
           GD YH++  V+RM++G  ++     +   L KI  +  + +  +V      QT+     Y
Sbjct: 20  GDDYHHIVRVMRMEKGSELICVLPSNKAVLCKIEQITNEHVIVRVVKWIDEQTELPIQIY 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
           I   + K ++L+++IQK  E+G        A R ++    +  +  ++R +     AAEQ
Sbjct: 80  IAHGLPKGDKLEFVIQKGTELGASSFIPFVAARSIVKWDAKKANKKLERWKKIAKEAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI------AHIPNVA 191
                +P ++ P T+  L++        VFA E    + + + L A+       H  ++ 
Sbjct: 140 SHRGKIPDVHAPMTIHELIEFAKTVDYRVFAYEEEAKQGNHQTLAAVFQQMKRGH--SLL 197

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + GPEGG+  EE E      F +  SLGPRILR++TA +  +A+
Sbjct: 198 AVFGPEGGFSDEEVELFKHHGFFS-CSLGPRILRTETAPLYLLAV 241


>gi|319403716|emb|CBI77301.1| hypothetical protein BARRO_10234 [Bartonella rochalimae ATCC
          BAA-1498]
          Length = 97

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%)

Query: 1  MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
          M+ +  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+ +
Sbjct: 1  MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGQDGEWLAKLLF 60

Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYI 85
          + K + + V Y  R  ++   + +I
Sbjct: 61 IKKKLWWLVLYVKRGCSQYIRIFFI 85


>gi|227872816|ref|ZP_03991130.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268]
 gi|227841343|gb|EEJ51659.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268]
          Length = 254

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 118/233 (50%), Gaps = 29/233 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G+ +H+L  VLR + G+ IL+ +G+  ++  +I S+  +     + ++       + +  
Sbjct: 20  GENFHHLHKVLRGQIGEKILISDGEGVDYQCEIQSFSEEEAVLSICFREEPHELPAKIIL 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
           + +  K ++++++IQK+VE+G+ A+ P+ ++ T      +     + R ++   SAA+Q 
Sbjct: 80  LQALPKGDKMEWIIQKAVELGISALIPLESKNTVMKLKEKKEEKKISRWQSIMDSAAKQS 139

Query: 139 DILTLP-----------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               LP           F Y     +F L  +++   ++   E       L K+ A    
Sbjct: 140 KRSILPKMENGMGWKEAFSYVKDC-DFKLLPYENERGVIPTREI------LAKMEAAVKG 192

Query: 188 P---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               ++A+ IGPEGG+  EE E      F+ P+SLG RILR++TAA+ A++L+
Sbjct: 193 KKNCSIALCIGPEGGFTKEEVEQAMGEGFL-PISLGKRILRTETAAITALSLI 244


>gi|161506354|ref|YP_001573466.1| hypothetical protein SARI_04551 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867701|gb|ABX24324.1| hypothetical protein SARI_04551 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 210

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%)

Query: 38  MKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRSQTKQSDVQYIFSPIKTNR 93
           M  G  + LF+G +  + ++I S   KS+  +V   E   R       +  + S  +  +
Sbjct: 1   MGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVMS--RGEK 58

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTLP 144
           +++ IQKS+E+G+  I P+   +++     +D  R            I+A EQC    +P
Sbjct: 59  MEFTIQKSIELGVSLITPL---FSERCGVKLDSERLNKKRQQWQKIAIAACEQCGRNRVP 115

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            I PP  LE      D   ++        S N+L        +  V +LIGPEGG  ++E
Sbjct: 116 EIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLP-----LPVERVRLLIGPEGGLSADE 170

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                   F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 171 IAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|260583902|ref|ZP_05851650.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC
           700633]
 gi|260158528|gb|EEW93596.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC
           700633]
          Length = 250

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 113/222 (50%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYI 85
           DQ H++  V+RM   ++  + +  +  +++KI+ +      ++E     Q +   DV   
Sbjct: 22  DQEHHMLKVMRMNIEESCEVVDENEQLYIAKITQLS-PFELRIEEHKEQQVELPIDVTIF 80

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN-THYNMDRVRTYTISAAEQCD 139
               K ++L+ ++QK+ E+G+  I PV     + ++T++ +   ++R++     AAEQ  
Sbjct: 81  VGLSKGDKLETIVQKATELGVHTIVPVEMKRNMVKWTKDKSQKKIERLQKIAQEAAEQSH 140

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195
            L +P +    TL+  +     + + + A E    E      ++ L ++    ++A   G
Sbjct: 141 RLHVPKVLDLMTLKESVVLAKQSTKALVAFEEVAKEGEAAVFVQTLTSLQKGDSIAFYFG 200

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+  +E E L+S   V   +LGPRILR++TA + A+A V
Sbjct: 201 PEGGFDLQEIEYLNSQE-VHSCALGPRILRAETAPMYALAAV 241


>gi|218509849|ref|ZP_03507727.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli Brasil 5]
          Length = 103

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +  P  L  LL  W    +I++ DE    +N L  L AI    ++A+L+GPEGG+  
Sbjct: 2   IPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRER-HLALLVGPEGGFSE 60

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EE+  L SL FVT + LGPRILR+DTAAVAA+A+VQA  GDW
Sbjct: 61  EERARLRSLDFVTAIPLGPRILRADTAAVAALAVVQAAIGDW 102


>gi|257437591|ref|ZP_05613346.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           A2-165]
 gi|257199898|gb|EEU98182.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           A2-165]
          Length = 305

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 29/237 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVE--YQSRSQTKQSDV 82
           G   H+L+ V+R K GD ++L +G   E+ + I+  G +++ F VE  Y S ++      
Sbjct: 77  GADAHHLSRVMRGKLGDTVILCDGNAVEYTATITGFGPETVEFSVEPGYPSAAEPSVEVT 136

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQC 138
            ++  P K ++L+ +I+  VE+G     P  +RY     +      +R       AA+QC
Sbjct: 137 LFVGYP-KQDKLEQVIRHGVELGCTHFVPFFSRYCVAAPKKEEQKNERYNRIAFEAAKQC 195

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN-- 189
               LP +  P      L N+   C+       ++F  E  G+   L +L A A   +  
Sbjct: 196 GRGVLPDVALP------LPNFGALCRSLEGYDLVLFCYELGGA--PLRQLLADAKPADGQ 247

Query: 190 ---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              +A++ G EGG+ +EE E   +   V  + LGPRILR +TA +A ++ V  + G+
Sbjct: 248 RLKIALITGAEGGFAAEEAEMAANAG-VKTVGLGPRILRCETAPLAVLSAVMTLTGN 303


>gi|258511960|ref|YP_003185394.1| hypothetical protein Aaci_1993 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478686|gb|ACV59005.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 250

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 13/248 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L RLF+D  +    +    G+  H+ + VLR + G+ +L+ +  +G + ++I+ V +   
Sbjct: 2   LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIAEV-RPGE 59

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMG------MGAIRPVIT-RYT 117
             V  + R+ + +   +++      K  ++D ++QK  E+G        A R V+     
Sbjct: 60  ICVHLRERAPSNEPKQRFVLVQGLAKGEKMDTILQKCTEVGAWGFVVFEAERSVVRLSGA 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNC-QIVFADETCGSE 175
                 + R R     AA Q     +PF+ + P+    L+   +H    ++  DE   + 
Sbjct: 120 AKVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLVALTEHGVDHVLVLDEEERAN 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L  + A       A+++GPEGG    E+           ++LGPRILR++TA   A+A
Sbjct: 180 GILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALA 239

Query: 236 LVQAICGD 243
           +  A  GD
Sbjct: 240 IALAEWGD 247


>gi|300815584|ref|ZP_07095808.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1]
 gi|300906490|ref|ZP_07124185.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1]
 gi|300401733|gb|EFJ85271.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1]
 gi|300531513|gb|EFK52575.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1]
 gi|324017218|gb|EGB86437.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 117-3]
          Length = 210

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRL 94
           M  G  + LF+G +  + ++I+   K S+  KV  + +   ++S +      +  +  ++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGKIDDRESPLHIHLGQVMSRGEKM 59

Query: 95  DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
           ++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +P I P
Sbjct: 60  EFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP 119

Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208
              LE      D   ++        S N+L        +  V +LIGPEGG  ++E    
Sbjct: 120 AMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSADEIAMT 174

Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 175 ARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|229822870|ref|ZP_04448940.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271]
 gi|229787683|gb|EEP23797.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271]
          Length = 255

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 18/221 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV-EYQSRSQTKQSDVQY 84
           D  H+L  V+R + G    L  G    +L+++   V +  +F++ E Q+ +   +  V+ 
Sbjct: 23  DSRHFL-RVMRSQPGAKAWLVTGDGQCYLAQLEGEVDRLAQFRLLELQAEADRVELPVEV 81

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAE 136
             +    K ++LDY++QK  E G    +P      V+   ++     +DR++     AAE
Sbjct: 82  TIACGLSKNDKLDYIVQKGTECGASHFQPLALSRDVVKWDSKKAGQRLDRLQKIAKEAAE 141

Query: 137 QCDILTLPFIYPPTTL-EFLLKNWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAI 192
           QC  L +P +  P +L + L ++ D++ C + + ++    E+S   +   A+       +
Sbjct: 142 QCHRLRIPQVAQPLSLAQLLAQSADYDACLVAYEEDAKQGEHSRLRQACQALKGQAGAKV 201

Query: 193 LI--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           L+  G EGG   EE   L    F T ++LGPRILR++TA +
Sbjct: 202 LVVFGSEGGLAPEEVSQLCEAGFQT-VALGPRILRAETAPI 241


>gi|182411872|ref|YP_001816938.1| hypothetical protein Oter_0047 [Opitutus terrae PB90-1]
 gi|177839086|gb|ACB73338.1| protein of unknown function DUF558 [Opitutus terrae PB90-1]
          Length = 251

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQ 83
           S D+ H+L  V R K GD ++ F+G+  EW+ ++    K+    KV ++ +++    ++ 
Sbjct: 21  SADESHHLVAVNRAKRGDTVVAFDGRGVEWICELVDDRKNAALLKVRFRQKARPLAYEIT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQ 137
              +  K   +D +++K+ E+G   I P+ +  TQ       +   +D+ +T  + AA+Q
Sbjct: 81  LGQALPKGASMDAIVRKATEIGATRIAPLESERTQVHLDSDRSDRKIDKWQTAALEAAKQ 140

Query: 138 CDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIPN-VAI 192
           C    LP I      +T     + +D              +  L    A     P  V  
Sbjct: 141 CGNPFLPEITAVQNASTFMESARGYDLKLIASLQPAAKSLKTVLAAFQATHGRTPKKVLW 200

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+GPEG +   E     +  F  P++LGP +LR +TAAV A++++
Sbjct: 201 LVGPEGDFTPAEMSLSKTAGF-EPITLGPLVLRCETAAVYALSVL 244


>gi|78169059|gb|ABB26156.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 259

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 48/230 (20%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           D+ HYL  VLR++ GD + + +G    W +++   Y  K+     E   +   +   +  
Sbjct: 41  DESHYLRRVLRLRIGDPLAISDGCGQLWQAELVDEYTVKTQPHPCEQVVQPHPR---LGL 97

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             S I+    D +++ + E+G+ AI+P+   R      +  DR  T    A EQC+ L  
Sbjct: 98  AVSIIRRG-FDDVVRMACELGIDAIQPLRCERTVPQAEHRPDRWNTIVREAVEQCERL-- 154

Query: 144 PFIYPPTTLEF-LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA----------- 191
              + PT LE   L +W ++C             S +K   +   PNV            
Sbjct: 155 ---WKPTVLELNSLDSWLNSC-------------SGQKAVGVTRTPNVGPLKDWFQQKAA 198

Query: 192 ------ILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAA 233
                 +++GPEGG+   E E L  HS   V P+ LGP ILR+ TAAVA 
Sbjct: 199 PGQTTWLIVGPEGGWTVAELEALNDHS---VVPIHLGPSILRTSTAAVAG 245


>gi|310659094|ref|YP_003936815.1| hypothetical protein CLOST_1790 [Clostridium sticklandii DSM 519]
 gi|308825872|emb|CBH21910.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 248

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 17/215 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY- 84
           +   +++ VLR++  D I + +  + E+L +I  + K S+ +KV  +  +  ++  VQ  
Sbjct: 20  EDVKHISKVLRLRVNDKIEVVDSNEKEYLCEIIAISKDSVEYKV-IEEVAIKRELGVQIK 78

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
           ++  + K  +LD + QK  E+G+ +I PV  +        +     + R++     AA+Q
Sbjct: 79  VYQGVPKGQKLDLIAQKLTEIGVYSITPVEFKRCVSSIKEEKEDKKIARLQRIIYEAAKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHA---IAHIPNVAIL 193
                +P I  P T + L+K    N   IVF +  C  EN+L+   A   ++ I ++ ++
Sbjct: 139 SKRNHIPKIESPMTFKELVKELKSNTINIVFYE--CEEENNLKSYFASLDLSDIESIGVI 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +GPEGG   EE E L S      L+LG RILR++T
Sbjct: 197 VGPEGGITPEEIELLES-NGCKVLTLGARILRTET 230


>gi|332526877|ref|ZP_08402970.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax
           benzoatilyticus JA2]
 gi|332111319|gb|EGJ11303.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax
           benzoatilyticus JA2]
          Length = 242

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 20/239 (8%)

Query: 9   RLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RL++D PL    T     G   H    V R++ G  ++LF+G   EW +++  +G+S + 
Sbjct: 4   RLYLDIPLAAGSTLALPPGAARHV--QVRRLQPGHALVLFDGGGAEWPAEVVAMGRSEVT 61

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            +V E Q+  +               +R+D +++K+ E+G+ AI+P++   +      + 
Sbjct: 62  VRVGEPQAVERELPFAATLAVGMPANDRMDALVEKATELGVAAIQPLVCERSVLRLDGER 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSE 175
                   +   ++A EQC    +P I P   L   L       D   +++ +    G+ 
Sbjct: 122 AERKQAHWQAVAVAACEQCGRTRVPRIQPVRPLAAWLGALPAEQDLGTRLLLSPRP-GAR 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              E+L A A       L GPEGG  S  +E          + LGPR+LR+DTA +A +
Sbjct: 181 PLAERLPAGA---GFCTLSGPEGGL-SPAEEAAAVAAGFAAVGLGPRVLRADTAPLAVL 235


>gi|292487087|ref|YP_003529957.1| hypothetical protein EAMY_0599 [Erwinia amylovora CFBP1430]
 gi|292900528|ref|YP_003539897.1| hypothetical protein EAM_2830 [Erwinia amylovora ATCC 49946]
 gi|291200376|emb|CBJ47504.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291552504|emb|CBA19549.1| UPF0088 protein yggJ [Erwinia amylovora CFBP1430]
 gi|312171190|emb|CBX79449.1| UPF0088 protein yggJ [Erwinia amylovora ATCC BAA-2158]
          Length = 243

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I  +   S +  +++  VLRM  G  + LF+G    + ++I    K  
Sbjct: 2   RIPRIYQPRPLQIGNEIALSEEAANHVGRVLRMSAGQMLELFDGTSLVFAAEIIQADKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
                  SR  +++S +      +  +  ++++ +QK+VE+G+  I P+ +         
Sbjct: 62  VCVRINASREDSRESPLHLHLGQVMSRGEKMEFTVQKAVELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M + +   I+A EQC    +P +     L+      +   ++        S N+
Sbjct: 122 ERLAKKMQQWQKIAIAACEQCGRNCIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        I  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----LPIERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|228933130|ref|YP_377200.2| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9902]
          Length = 243

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 48/230 (20%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           D+ HYL  VLR++ GD + + +G    W +++   Y  K+     E   +   +   +  
Sbjct: 25  DESHYLRRVLRLRIGDPLAISDGCGQLWQAELVDEYTVKTQPHPCEQVVQPHPR---LGL 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             S I+    D +++ + E+G+ AI+P+   R      +  DR  T    A EQC+ L  
Sbjct: 82  AVSIIRRG-FDDVVRMACELGIDAIQPLRCERTVPQAEHRPDRWNTIVREAVEQCERL-- 138

Query: 144 PFIYPPTTLEF-LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA----------- 191
              + PT LE   L +W ++C             S +K   +   PNV            
Sbjct: 139 ---WKPTVLELNSLDSWLNSC-------------SGQKAVGVTRTPNVGPLKDWFQQKAA 182

Query: 192 ------ILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAA 233
                 +++GPEGG+   E E L  HS   V P+ LGP ILR+ TAAVA 
Sbjct: 183 PGQTTWLIVGPEGGWTVAELEALNDHS---VVPIHLGPSILRTSTAAVAG 229


>gi|213963907|ref|ZP_03392153.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno]
 gi|213953416|gb|EEB64752.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno]
          Length = 241

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 9/212 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-- 84
           ++  ++  VLR K GD + + NGK   + +++ +       + E +    T QS   Y  
Sbjct: 23  EESQHIVKVLRKKVGDVLHITNGKGQLFEAQLDFASPK---QCEVRILKCTTQSPRSYYL 79

Query: 85  --IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
             + +P K N R ++ ++K+ E+G+  I P+I  +++ T   ++R     +SA +Q    
Sbjct: 80  HLVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQC 139

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            LP +  P       K    +    +      +E  L           + +LIGPEG + 
Sbjct: 140 YLPKLNAPIASSQFFKAMKTDTSAKYIAHCYENEKRLFSRTLTPFPERITVLIGPEGDFS 199

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           + E  T     FV P+SLG   LR++TAAV A
Sbjct: 200 TTELNTALQQAFV-PISLGDTRLRTETAAVVA 230


>gi|312622233|ref|YP_004023846.1| hypothetical protein Calkro_1166 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202700|gb|ADQ46027.1| protein of unknown function DUF558 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 243

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  +++  VLR +EGD I L +G + ++ S+I  + K  R K+  ++++   +   + IF
Sbjct: 22  EDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKD-RIKLLIENKTLNDRESTKNIF 79

Query: 87  ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138
                IK  ++D+++QK  E+G+  I PV+++      ++     ++R R     A +QC
Sbjct: 80  LFQCIIKNQKMDFIVQKVTEIGVKTIVPVVSKRVVIDISEKQEKKVERWRKIAQEAQKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P I  P  +  + + +     I+F      SE S  +    +   N+ IL+GPEG
Sbjct: 140 LRPMPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS--EWCISSDYNNIGILVGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE E L +   V  +SLG RILRS+TA++AA++++    G+
Sbjct: 198 GFEEEEIEELKTFKNVKVISLGKRILRSETASIAALSILMHELGE 242


>gi|300925058|ref|ZP_07140976.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1]
 gi|300418804|gb|EFK02115.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1]
          Length = 210

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRL 94
           M  G  + LF+G +  + ++I+   K S+  KV  + +   ++S +      +  +  ++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGQLDDRESPLHIHLGQVMSRGEKM 59

Query: 95  DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
           ++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +P I P
Sbjct: 60  EFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP 119

Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208
              LE      D   ++        S N+L        +  V +LIGPEGG  ++E    
Sbjct: 120 AMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSADEIAMT 174

Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 175 ARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|158336565|ref|YP_001517739.1| 16S ribosomal RNA methyltransferase RsmE [Acaryochloris marina
           MBIC11017]
 gi|158306806|gb|ABW28423.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 263

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 18/244 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L+RL +        Q   + DQ HYL  VLR+  GD  +  NG+   W++++      
Sbjct: 6   AQLQRLAIAPEQLQDHQIHLTSDQQHYLCDVLRLGHGDRFIAMNGQGQLWVAELQ---PD 62

Query: 65  IRFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120
            RF    ++  +  +  +  +   +P K N  D +++   E+G+  I P+I++ T  + +
Sbjct: 63  ARFARRLKALGEQTELAMPMMLLAAPPKGNHFDQVVRSVTELGVSYIVPLISQRTLLKPS 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R +     AAEQ     +P +  P + E  +   D   Q  +    C  E S   
Sbjct: 123 SNRIQRWQRIATEAAEQSHRQIIPKVLDPASFEKTVMQDD---QGDWQRYICTVEPSAPN 179

Query: 181 -LHAIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            LH ++          VA+++GPEGG+   E +   +  +   +SLG R LR+ TA   A
Sbjct: 180 FLHCLSQALDQESQSGVAVMVGPEGGWTETETQQAQTAGY-QAVSLGQRTLRAVTANYMA 238

Query: 234 MALV 237
           +++ 
Sbjct: 239 VSIA 242


>gi|332886055|gb|EGK06299.1| hypothetical protein HMPREF9456_00173 [Dysgonomonas mossii DSM
           22836]
          Length = 234

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQY 84
           ++  +   VLR KEGD I L +GK   + ++I             ++  Q K  + ++  
Sbjct: 20  EEAQHCIKVLRKKEGDEIFLTDGKGSFYDAEIIQANPKHCHVNILKTIVQPKNWKCNIHI 79

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            F+P K  +R+++  +K+ E+G+    P++  +++     + R+    +SA +Q     L
Sbjct: 80  AFAPTKNIDRIEWFAEKATEIGVDRFSPLLCHHSERREIKLQRIEKILVSAMKQSQKAIL 139

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +    +    +K  D   Q   A      + SL+  + +    NV ILIGPEG +  +
Sbjct: 140 PQLDEMQSFSKFVKQ-DFEAQKFIAHCYPSEKKSLKDAYKLGE--NVLILIGPEGDFSEQ 196

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E E      F  P++LG   LR++TAA+AA
Sbjct: 197 EVEEAMKNGF-QPVTLGESRLRTETAALAA 225


>gi|229220687|ref|YP_620039.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
           AU 1054]
 gi|229220796|ref|YP_834281.2| hypothetical protein Bcen2424_0635 [Burkholderia cenocepacia
           HI2424]
          Length = 255

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   ++  VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P + P       L       
Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAP 173

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 174 ADGELRLLLSPRASSPFASLPDAPPAAA---VTLLIGPEGGLSPDEEHAARARGF-TALS 229

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255


>gi|33595836|ref|NP_883479.1| hypothetical protein BPP1163 [Bordetella parapertussis 12822]
 gi|33600365|ref|NP_887925.1| hypothetical protein BB1379 [Bordetella bronchiseptica RB50]
 gi|33565915|emb|CAE36464.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33567964|emb|CAE31877.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 246

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSP 88
           H+   VLR++ G  ++LF+G  GE+ + +   GK+   ++  +  R       +  +   
Sbjct: 26  HHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAWAQLGAHVPREAELPGRITLVQGL 85

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILT 142
              +++D++++K+VE+G   + P+  + +            +   +    +AAEQC    
Sbjct: 86  PAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNR 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGG 199
           L  +  P  L   L         +     C  +  L+   A+A      ++ +L+GPEGG
Sbjct: 146 LMAVDAPQALAAWLAQAPGAALRLL----CHPQAELDLAGALARHAAHDDICLLVGPEGG 201

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +  EE E   +   V  +  GPR+LR++TA +A +A V AI G
Sbjct: 202 WSDEELEQARAA-GVQAVRFGPRVLRTETAGIALIAAVSAIRG 243


>gi|260062552|ref|YP_003195632.1| 16S ribosomal RNA methyltransferase RsmE [Robiginitalea biformata
           HTCC2501]
 gi|88784119|gb|EAR15289.1| hypothetical protein RB2501_13214 [Robiginitalea biformata
           HTCC2501]
          Length = 235

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYI 85
           ++  ++  VLR K GD + + NGK   ++++I             ++R    K   +   
Sbjct: 21  EESRHIVKVLRKKAGDQLHITNGKGYLFVAEILEANPERCMGKLLETRKFHPKMYSLHVA 80

Query: 86  FSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K T+R ++ ++K+ E+G+  I PVI + ++     M+R++     A +Q     LP
Sbjct: 81  VAPTKKTDRFEWFLEKATEIGIDRITPVICQRSERRKLPMERMQRVVQEAMKQSLRTYLP 140

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +  P  L   L+      + +     C  +  ++    +A   +V ILIGPEG +  +E
Sbjct: 141 ELEEPVALREFLEREQPVLKFI---AHCEEDEKMDLKRRVAADKDVIILIGPEGDFTHDE 197

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +      F+ P+SLG   LR++TAA+ A   V  I
Sbjct: 198 IQMACEKGFI-PVSLGEYRLRTETAALVACTTVNLI 232


>gi|227888501|ref|ZP_04006306.1| protein of hypothetical function DUF558 [Escherichia coli 83972]
 gi|300900237|ref|ZP_07118421.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1]
 gi|300928111|ref|ZP_07143656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1]
 gi|300954208|ref|ZP_07166673.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1]
 gi|300980098|ref|ZP_07174841.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1]
 gi|301049259|ref|ZP_07196232.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1]
 gi|301643701|ref|ZP_07243740.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1]
 gi|227834770|gb|EEJ45236.1| protein of hypothetical function DUF558 [Escherichia coli 83972]
 gi|300298955|gb|EFJ55340.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1]
 gi|300318792|gb|EFJ68576.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1]
 gi|300356253|gb|EFJ72123.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1]
 gi|300409355|gb|EFJ92893.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1]
 gi|300463877|gb|EFK27370.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1]
 gi|301077903|gb|EFK92709.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1]
 gi|315289506|gb|EFU48901.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 110-3]
 gi|315293940|gb|EFU53292.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 153-1]
 gi|324011803|gb|EGB81022.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 60-1]
          Length = 210

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRL 94
           M  G  + LF+G +  + ++I+   K S+  KV  + +   ++S +      +  +  ++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEITSASKKSVEVKV-LEGQIDDRESPLHIHLGQVMSRGEKM 59

Query: 95  DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
           ++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +P I P
Sbjct: 60  EFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP 119

Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208
              LE      D   ++        S N+L        +  V +LIGPEGG  ++E    
Sbjct: 120 AMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSADEIAMT 174

Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 175 ARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|170695362|ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M]
 gi|170139762|gb|EDT07944.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M]
          Length = 246

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 23/226 (10%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDVQYIFSPI 89
           VLR++ GD+I+LFNG+ GE+ ++++ + +      IR   + +  +  + +  Q I S  
Sbjct: 28  VLRLQVGDSIVLFNGEGGEYSAELAAIERRAVTVKIREFRDIEVETPYRLTLAQGIAS-- 85

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT------ISAAEQCDILTL 143
             +++D++I+K+VE+G  +  P+ T  +          R +        ++ EQC    L
Sbjct: 86  -GDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGERAARRHAHWEGIVRASCEQCGRNRL 144

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADE-----TCGSENSLEKLHAIAHIPNVAILIGPEG 198
           P + P   +   L       ++   DE     +  +      L A      V +L+GPEG
Sbjct: 145 PEVMPVREIATWLSAMP---RVPAGDELRILLSPRASIPFSALPAAPPKGPVTVLVGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           G+ + E+       F   + LGPR+LR++TA +A ++ + A  G W
Sbjct: 202 GFSAAEEAAAMDHGFQA-VGLGPRVLRTETAGMAVLSALAAGWGGW 246


>gi|124265393|ref|YP_001019397.1| 16S ribosomal RNA methyltransferase RsmE [Methylibium
           petroleiphilum PM1]
 gi|124258168|gb|ABM93162.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 245

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 31/241 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  VD PL    +         ++  VLR++ GD + LF+G+  EW +++  +G+S  
Sbjct: 1   MPRFLVDMPLADGLEAALPAAAARHV-QVLRLQPGDGLTLFDGRGSEWEARVVQMGRS-- 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI-------KTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117
              E + R    Q   + +  PI          R+D++++K+ E+G+  ++P++   +  
Sbjct: 58  ---EVRVRVGASQPVDRELPLPITLAVGMPANERMDWLVEKATELGVSTLQPLVCERSVL 114

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--- 170
               +     +   +    +AAEQC   TLP + P          W    +    +    
Sbjct: 115 RLGGERADRKLAHWQGVASAAAEQCGRTTLPRLLPVRA----FGEWQRALRPDVTEARFV 170

Query: 171 ---TCGSENSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                G+   +E L  A+     +  L GPEGG  + E     +   + P++LGPR+LR+
Sbjct: 171 LSLAEGTRPFVEALPPALRAGQGLLFLSGPEGGLCNTEDAQARAA-GLQPITLGPRVLRA 229

Query: 227 D 227
           +
Sbjct: 230 E 230


>gi|255034262|ref|YP_003084883.1| hypothetical protein Dfer_0449 [Dyadobacter fermentans DSM 18053]
 gi|254947018|gb|ACT91718.1| protein of unknown function DUF558 [Dyadobacter fermentans DSM
           18053]
          Length = 235

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 10/213 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++  + + VLR+  GD I + NGK      +++  G+ + ++V     ++ +   V    
Sbjct: 17  EEARHSSKVLRLGSGDIIQVTNGKGLLQKCRLNIQGRRVGYEVIESKTAERRPFAVHMAI 76

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTISAAEQCDIL 141
           +P  K  R ++M++K  E+G+  I  V+T +T     N   N+ R+     +A +Q    
Sbjct: 77  APTRKAERNEWMVEKMTEIGVERIDFVVTEHTNPETLNRVVNLTRLNRIAAAAMKQSQQF 136

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            +P I      E  +KN     +++ +  E    E+   K+   A   +  +LIGPEG +
Sbjct: 137 YMPVITVNNKYEPFIKNAGDEVRLIAYVPEQNTVEHVFSKIKKGA---DTTLLIGPEGDF 193

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             +E E      F T +SLGP  LR++TAAVA 
Sbjct: 194 SPKEVELALQAGFQT-VSLGPTRLRTETAAVAG 225


>gi|229597247|ref|YP_001897009.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phytofirmans
           PsJN]
          Length = 251

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 26/255 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R FV  PL  +       D   ++  VLR++ GD+I+LFNG+ GE+ +++  V +   
Sbjct: 6   MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64

Query: 64  --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
              IR   + +  +  + +  Q I      +++D++I+K+VE+G  +  P+ T  +    
Sbjct: 65  MVKIREFRDIEVEAPYRLTLAQGIAG---GDKMDWLIEKAVELGASSFVPLTTTRSV-VR 120

Query: 122 YNMDRVR-------TYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
            + DR +           ++ EQC    LP + P   +   L +      + + +I+ + 
Sbjct: 121 LSGDRAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSP 180

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +  S   L +      V +L+GPEGG+ + E+    +  F T + LGPR++R++TA
Sbjct: 181 R---ASISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETA 236

Query: 230 AVAAMALVQAICGDW 244
            +A ++ + A  G W
Sbjct: 237 GIAVLSALAAGWGGW 251


>gi|105891901|gb|ABF75066.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116646747|gb|ABK07388.1| protein of unknown function DUF558 [Burkholderia cenocepacia
           HI2424]
          Length = 262

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   ++  VLR++ GD + LF+G  G++ +++      
Sbjct: 15  AAVPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 67

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 68  ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P + P       L       
Sbjct: 121 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAP 180

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 181 ADGELRLLLSPRASSPFASLPDAPPAAA---VTLLIGPEGGLSPDEEHAARARGF-TALS 236

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 237 LGPRVLRTETAGAAVLAALAARWGGW 262


>gi|297529333|ref|YP_003670608.1| hypothetical protein GC56T3_0989 [Geobacillus sp. C56-T3]
 gi|297252585|gb|ADI26031.1| protein of unknown function DUF558 [Geobacillus sp. C56-T3]
          Length = 258

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           SGD  H++A V+RMK GD I+         + +I  +    ++ ++      +++     
Sbjct: 19  SGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHVQVRIVQWKEERSELPVRI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K  + + +IQK  E+G        A R V+    +     ++R +     AAE
Sbjct: 79  YIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAKKAEKKVERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAIL- 193
           Q +   +P +  P +   LL         +FA E          L A+     P  A+L 
Sbjct: 139 QAERTVVPDVRAPLSFVELLAFGQTVDVRLFAYEKEARNARHAALPALLSRLRPGGALLA 198

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             GPEGG+  EE E L    F +P SLGPRILR++TA
Sbjct: 199 VFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETA 234


>gi|260892511|ref|YP_003238608.1| protein of unknown function DUF558 [Ammonifex degensii KC4]
 gi|260864652|gb|ACX51758.1| protein of unknown function DUF558 [Ammonifex degensii KC4]
          Length = 251

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 18/234 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R+FV      +T+     ++ HYL  VLR++ GD + +    DGE  ++   + +  R
Sbjct: 1   MRRVFVLPEELGETKVILPPEESHYLLSVLRLRAGDRVAVH---DGEGRARAGIILRESR 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
            +VE +            +F  +     K  ++D ++QK+ E+G+  I P++T       
Sbjct: 58  GRVEVELGEYLSLPPEPPVFVTLFQGIPKGEKMDLVVQKATELGVSRIVPLLTERVVVQW 117

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             +      +R +     A  QC   T+P I   T+L   L+  +     +   E  G  
Sbjct: 118 DGERARKRRERWQRLAREAVRQCGRSTVPRIKEVTSLPQALEELEPETVGIMPWE--GER 175

Query: 176 N-SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           N SL       H   VA+ IGPEGG+ SE +  L     V  ++LGPRILR++T
Sbjct: 176 NLSLRSCLHSRHPRRVALFIGPEGGF-SEREVALARERGVFTVTLGPRILRTET 228


>gi|187716561|gb|ACD17785.1| protein of unknown function DUF558 [Burkholderia phytofirmans PsJN]
          Length = 246

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 26/255 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R FV  PL  +       D   ++  VLR++ GD+I+LFNG+ GE+ +++  V +   
Sbjct: 1   MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59

Query: 64  --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
              IR   + +  +  + +  Q I      +++D++I+K+VE+G  +  P+ T  +    
Sbjct: 60  MVKIREFRDIEVEAPYRLTLAQGIAG---GDKMDWLIEKAVELGASSFVPLTTTRSV-VR 115

Query: 122 YNMDRVR-------TYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFAD 169
            + DR +           ++ EQC    LP + P   +   L +      + + +I+ + 
Sbjct: 116 LSGDRAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSP 175

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +  S   L +      V +L+GPEGG+ + E+    +  F T + LGPR++R++TA
Sbjct: 176 R---ASISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETA 231

Query: 230 AVAAMALVQAICGDW 244
            +A ++ + A  G W
Sbjct: 232 GIAVLSALAAGWGGW 246


>gi|194477277|ref|YP_002049456.1| hypothetical protein PCC_0836 [Paulinella chromatophora]
 gi|171192284|gb|ACB43246.1| hypothetical protein PCC_0836 [Paulinella chromatophora]
          Length = 257

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L+RLF+    L    + K    + HYL  VLR + GD   + +G    W + +    ++
Sbjct: 3   ELRRLFISHHRLGYSNEFKLRASESHYLTKVLRYRIGDCFAVIDGVGRLWSAILMDRERA 62

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHY 122
            +  K+     S    S    +   +     D ++Q + E+G+  I+P+I ++   N   
Sbjct: 63  QLEQKITIPLVSTMAPSPQLELAIALPRRGFDDLLQITSELGIDRIQPLIVKHCVTNKDI 122

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI------VFADETCGSEN 176
           ++DR +     + EQC+ L  PF   P      ++  D +         +FA    G   
Sbjct: 123 SLDRCKAILQESTEQCERLWTPFCGDPCLFYNWIEQKDSDAAKNETRVKLFATTRRGGLI 182

Query: 177 SLEKL-----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           SL KL       I+   ++++ IGPEGG+   E++   +  +   +SLGPRIL++ TAA+
Sbjct: 183 SLVKLLNQNSSKISLSQSLSLAIGPEGGWTLNEEQRAEAAGW-QAVSLGPRILKTRTAAI 241

Query: 232 AAMALV 237
            A A++
Sbjct: 242 VAGAIM 247


>gi|297566407|ref|YP_003685379.1| hypothetical protein Mesil_1997 [Meiothermus silvanus DSM 9946]
 gi|296850856|gb|ADH63871.1| protein of unknown function DUF558 [Meiothermus silvanus DSM 9946]
          Length = 232

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 14/220 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+LA VLR + GD + +F+G+  E  + +  V   +      ++   +++  V  
Sbjct: 18  TGREAHHLADVLRARPGDAVTVFDGEGLEGRAVVRSVEDGVVELEVTETWPASREVPVPV 77

Query: 85  IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCD 139
           +   + +K ++L  +++ + E+G   I P++  ++   +     + R+R   + AA+Q +
Sbjct: 78  VLYVALLKGDKLADVVRAATELGAIKIIPLVCVHSVAKEMGEGKLLRLRRVALEAAKQSE 137

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
             T+P +  P  L  +         +     T    + LE          VAI  GPEGG
Sbjct: 138 RTTIPEVLAPIPLSAI--PPVEQGLVAHPGGTLRVRDILELSR------PVAIATGPEGG 189

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +  +E + L    F TP++LG RILR++TA +A ++LV A
Sbjct: 190 FSEDEMQILLERGF-TPVTLGRRILRAETAPLALLSLVTA 228


>gi|284052447|ref|ZP_06382657.1| 16S ribosomal RNA methyltransferase RsmE [Arthrospira platensis
           str. Paraca]
 gi|291566292|dbj|BAI88564.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 252

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +  Q HYL  VLR+++GD  ++ +G+ G WL+ I   G++       +  ++       +
Sbjct: 22  TAGQQHYLGRVLRLQQGDRFIILDGRGGWWLA-IWKGGQNATVVEPIRVNNELPIPVTLW 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142
           +  P K +  + +++ + E+G+  + P+I+  T    +   + R R     AAEQ +   
Sbjct: 81  VSMP-KGSGFEEIVRCTTELGVSRLVPIISARTVVVPSPQKLARWRRIATEAAEQSERQI 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL----------HAIAHIPNVAI 192
           LP I  P +++   +      + V     C +      L              ++ N  +
Sbjct: 140 LPEITDPLSIQQAWETLSDQGEEV-DKYICVARGDFPHLLNCLLASRTGQGKGYVYNSLL 198

Query: 193 L-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L IGPEGG+ + E E   +  F  P+SLG RILRS TA + A++LV A+
Sbjct: 199 LAIGPEGGWTTPEVEEAINRGF-QPVSLGSRILRSVTAPMVALSLVAAV 246


>gi|254672585|emb|CBA06262.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 153

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 17/160 (10%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P + 
Sbjct: 1   MDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVL 60

Query: 148 PPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI--LIGPEGGYHSEE 204
           P     E L K    + +++       S N   KL  I H P+ AI  ++GPEGG+  +E
Sbjct: 61  PIIGYREALDKMPSESTKLIM------SINRARKLGDIRH-PSGAIVFMVGPEGGWTEQE 113

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 114 EQQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 152


>gi|171909516|ref|ZP_02924986.1| hypothetical protein VspiD_00050 [Verrucomicrobium spinosum DSM
           4136]
          Length = 253

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 12/223 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           GD+  +   V+R   GD I  F+G       +I +  GK++  +V     +      +  
Sbjct: 25  GDEARHCTSVMRHTAGDEITTFDGAGISARCRIVATTGKTVELEVVETLSTPAPAVSISL 84

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
           + S  K + ++++++K+VE+G+ AI PV+T  T      +      ++ +   + A +QC
Sbjct: 85  VQSVPKGSNMEWIVEKAVELGVNAIHPVLTARTVVKLDKKEAAKKQEKWQRLALEACKQC 144

Query: 139 DILTLPFIYPPTT-LEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAILI 194
               LP I+PP    E +     H+ +I+ A   D     E   ++    + I +  + +
Sbjct: 145 GQNWLPVIHPPAPYAEVMAGLPPHDLRIIAAIQDDSKPLKEILKDRAKQGSVISSTLLCV 204

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEG +   E +T      V P+SLGP ILR +TA +  ++++
Sbjct: 205 GPEGDFTPAEYQTARDHGCV-PMSLGPIILRVETATMYGLSVL 246


>gi|71065526|ref|YP_264253.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter arcticus
           273-4]
 gi|71038511|gb|AAZ18819.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 294

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 49/255 (19%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQSDVQYI 85
           H+   VLR   GD  +LF+G  GE+  ++  + K           +  RS    + +  +
Sbjct: 39  HHWCRVLRANIGDQGILFDGFGGEYQVQLLAISKKHATVTLLAHTHDDRSAATFTKIGLV 98

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCD 139
            S  +  R+DY IQKS E+G+ AI+ + + + +           +   +   I+A EQC 
Sbjct: 99  MS--RGERMDYAIQKSTELGVTAIQLLSSHHGEVNLKPTQVEKKLAHWQQVAIAACEQCG 156

Query: 140 ILTLPFIYPP--------------------------TTL------EFLLKNWDHNCQIVF 167
           +   P I  P                          TTL      + L +  D   Q+  
Sbjct: 157 LNRPPLILAPIAINDWLKPVTTTTPVEMEAAVSPMVTTLSQDTYYQVLQQPADLRLQLSV 216

Query: 168 --ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             A +    ++ L  L   A  P + +LIGPEGG   EE +   S+ F  P  +G R+LR
Sbjct: 217 PAAGQPAMPDSLLTTLQQPA--PYIELLIGPEGGLSDEECKQAQSVGF-EPWQIGARVLR 273

Query: 226 SDTAAVAAMALVQAI 240
           ++TA V A+A +QA+
Sbjct: 274 TETAPVVALATLQAL 288


>gi|261418481|ref|YP_003252163.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. Y412MC61]
 gi|319767558|ref|YP_004133059.1| hypothetical protein GYMC52_2535 [Geobacillus sp. Y412MC52]
 gi|261374938|gb|ACX77681.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC61]
 gi|317112424|gb|ADU94916.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC52]
          Length = 258

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           SGD  H++A V+RMK GD I+         + +I  +    ++ ++      +++     
Sbjct: 19  SGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHVQARIVQWKEERSELPVRI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K  + + +IQK  E+G        A R V+    +     ++R +     AAE
Sbjct: 79  YIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAKKAEKKVERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAIL- 193
           Q +   +P +  P +   LL         +FA E          L A+     P  A+L 
Sbjct: 139 QAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARHAALPALLSRLRPGGALLA 198

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             GPEGG+  EE E L    F +P SLGPRILR++TA
Sbjct: 199 VFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETA 234


>gi|227431610|ref|ZP_03913646.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352602|gb|EEJ42792.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 245

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 25/250 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R F++ P+    +  A  D + +   VLR + G      +      L +++ +  + I
Sbjct: 1   MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGEVTLIDYEVI 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQN 119
             KV  +  S  +   DV  + SP+K +R D+ IQK+ E+G+  I     +  +  + + 
Sbjct: 61  NIKVIDRYYSNVELPIDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVADWRKQ 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCG 173
               + R      +AAEQ   L +P        E +   W    Q      +V  +++  
Sbjct: 121 QEKKIKRFNKIAKAAAEQAHRLVVP--------EIIFTTWQKTIQMPKNTGLVAWEKSAR 172

Query: 174 SENSLEKLHAIAHIPNVAILI---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
              S   + A++ +P+   L+   GPEGG    E E L    F     LGPRILR++TA 
Sbjct: 173 DGESAALIAAVSAVPSGEKLVCVFGPEGGLTENEIEELRLQNFELA-GLGPRILRAETAP 231

Query: 231 VAAMALVQAI 240
           + AM+ +  +
Sbjct: 232 LYAMSAISVL 241


>gi|257483559|ref|ZP_05637600.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 151

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 14/157 (8%)

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFI 146
           R+D+ IQK+ E+G+  I P+++   +               +   ISA EQC    +P I
Sbjct: 2   RMDWAIQKATELGVSEITPIVSERCEVRLKDERAEKRQAHWQQIAISACEQCGRSVVPVI 61

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
           + P  L   +K+ + + ++V            E L +     ++A LIGPEGG +  E +
Sbjct: 62  HAPMPLAEWIKHTEADLKLVL-------HPVAEPLTSHDKPASLAFLIGPEGGLNDAEVD 114

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              +  F     LGPR+LR++TA V A+++ Q + GD
Sbjct: 115 QAQAAGFHA-ARLGPRVLRTETAPVVALSVAQQLWGD 150


>gi|319400913|gb|EFV89132.1| RNA methyltransferase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 250

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 14/223 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTK-QSDVQY 84
           + YH++ +V+R KEG NI++    +  +  K IS   +SI  K+E + +  T+   ++  
Sbjct: 22  EDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQSIEIKLEEKQQINTELPQNITI 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
               IK ++ ++MIQK+ EMG          R V+          + R +     AAEQ 
Sbjct: 82  CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VAILI 194
             LT+P I   + L+ +    +    ++ A E       L +    I        V I+ 
Sbjct: 142 YRLTIPNIKFKSNLKEIYGMINQYDYVLIAYEEQAKHGELSQFKQTIKQFKTQDRVLIIF 201

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG    E      +   T + LGPRILR++TA + A++ V
Sbjct: 202 GPEGGLSDSEIALFDDVS--TIVGLGPRILRAETAPLYALSAV 242


>gi|15894567|ref|NP_347916.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium
           acetobutylicum ATCC 824]
 gi|15024214|gb|AAK79256.1|AE007641_2 Uncharacterized conserved protein, ortholog of YQEU B.subtilis
           [Clostridium acetobutylicum ATCC 824]
 gi|4104515|gb|AAD02055.1| unknown [Clostridium acetobutylicum DSM 1731]
 gi|325508699|gb|ADZ20335.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 250

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           GD   ++  VLR+K G+ + + +    E+L +I  + K +++ K+        +     Y
Sbjct: 20  GDDVKHIYKVLRLKVGEKVSINDCNSHEFLGEIEQINKENVKVKIIENLDINNESPLNVY 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQC 138
           ++    K  ++D ++QK+ E+G+  I P+IT     +  ++    +DR       AA+Q 
Sbjct: 80  LYQGFPKAAKMDIIVQKNTELGIREIIPLITQRVVVKNEKSELKKVDRWNRIAFEAAKQS 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH---IPNVAILIG 195
               +P +    +    ++       +V        +  ++K+ A      I NVAI+IG
Sbjct: 140 KRSVIPKVKDIASFNSAIEELKE-MDLVLVPYENQEKVGMKKVAAAIEKNKIKNVAIVIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+   E E L  +     ++LGPRILR++TA +   +LV
Sbjct: 199 PEGGFEETEIEELKKIGAYI-ITLGPRILRTETAGLVCTSLV 239


>gi|255534646|ref|YP_003095017.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340842|gb|ACU06955.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae
           bacterium 3519-10]
          Length = 257

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 20/222 (9%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--- 79
           K + ++  ++  VLRM++G+ I + +GK      K+   GK +   V     S+T Q   
Sbjct: 39  KINEEEQQHILKVLRMRDGEEISVTDGKGNLATGKLITEGKKVSLNV-----SETHQNLP 93

Query: 80  ---SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135
              + +    +P K  +R+++ ++K+ EM +  +  + T  T+  + N+D++R  ++SA+
Sbjct: 94  NFSTQLHIAIAPTKNIDRIEFFLEKATEMAVSEVTILQTEKTERKNLNIDKLRKQSVSAS 153

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAIL 193
           +Q      P +   T     +KN D     V          SLE+  L  I    +   L
Sbjct: 154 KQSLRYHFPKVNDITKFSDFIKNLDPETTFV-----AHCNESLERFNLKDIQPQKHTTFL 208

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           IGPEG + SE++  + +   +  +SLG + LR++TA +   A
Sbjct: 209 IGPEGDF-SEKEINMLADKGIKAVSLGNQRLRTETAGIFVAA 249


>gi|326202057|ref|ZP_08191927.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM
           2782]
 gi|325987852|gb|EGD48678.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM
           2782]
          Length = 250

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 19/250 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+       +    G+ + +L  VLR +  D +    G   ++ ++I  +  S  
Sbjct: 1   MSRYFVEEAQIANGRINIVGEDFQHLKKVLRAQLKDEVTACCG-GFDYTAEIEEINDSSI 59

Query: 67  FKVEYQSRSQTKQSDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-------RYT 117
             +         +S ++  +F  + K+++++ +IQK VE+G+  I PVIT          
Sbjct: 60  ICIITDVNKNFTESPLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPVITDRCVSRINTD 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIV--FADETCGS 174
           ++    + R +     AA+QC+  T+P  +YP T  E + K       I+    +   G 
Sbjct: 120 KDAKNKLARWQKIAREAAKQCNRGTIPNILYPITFKEAVEKASQAELAIIPYEKESAVGL 179

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET-LHSLPFVTPLSLGPRILRSDTAAVAA 233
           +N + +   I    + +I+IGPEGG+  EEKE  +     V  +SLGPRILR++TA + A
Sbjct: 180 KNIVPRYEGIT---SGSIIIGPEGGF--EEKEVQMAEDRGVKKISLGPRILRTETAGMVA 234

Query: 234 MALVQAICGD 243
           ++L+    GD
Sbjct: 235 LSLLMYELGD 244


>gi|319954606|ref|YP_004165873.1| ribosomal RNA small subunit methyltransferase e [Cellulophaga
           algicola DSM 14237]
 gi|319423266|gb|ADV50375.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
           algicola DSM 14237]
          Length = 238

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR---FKVEYQSRSQTKQSDVQ 83
           ++  ++  VLR KEGD + L NGK   +L +   +   +R    K+  ++  +     + 
Sbjct: 21  EESKHIVKVLRKKEGDILHLTNGKG--YLFEAEILRADLRKCAVKIIKETYHKKNSPALH 78

Query: 84  YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            + +P K N R ++ ++K+ E+G+  I P+I   ++     +DR+     +A +Q     
Sbjct: 79  LVVAPTKMNDRYEWFLEKATEIGVTEITPIICDNSERKVLKLDRMEKVLQAAMKQSLQFH 138

Query: 143 LPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            P +  P + +  ++  N  H  +  F    C     ++    +    N  ILIGPEG +
Sbjct: 139 KPILNEPISAKTFIEQNNPTHQEEQQFFIAHCEETEKIDLKERLIPSHNALILIGPEGDF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            + E E    L +  P+SLG   LR++TAA+ A A ++ I
Sbjct: 199 STSEIEIALRLGY-KPVSLGENRLRTETAAIFACATMKLI 237


>gi|161525920|ref|YP_001580932.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans
           ATCC 17616]
 gi|189349361|ref|YP_001944989.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans
           ATCC 17616]
 gi|160343349|gb|ABX16435.1| protein of unknown function DUF558 [Burkholderia multivorans ATCC
           17616]
 gi|189333383|dbj|BAG42453.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 254

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 43/265 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEIDKRSALAQIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP----PTTLEFLLKNW 159
            P      V+    +     +   R    ++ EQC    +P +         L+ L    
Sbjct: 114 VPLSTARGVVKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLPPPA 173

Query: 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219
           D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LSL
Sbjct: 174 DGELRLLLSPRASIPFASLPDAPPAAP---VTLLIGPEGGLSPDEEAAARARGF-TALSL 229

Query: 220 GPRILRSDTAAVAAMALVQAICGDW 244
           GPR+LR++TA  A +A + A  G W
Sbjct: 230 GPRVLRTETAGAAVLAALAARWGGW 254


>gi|291519248|emb|CBK74469.1| RNA methyltransferase, RsmE family [Butyrivibrio fibrisolvens 16/4]
          Length = 243

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
           +G   H+L  V+R++ G+ I +       ++ ++S Y+ K +   V  +  S T+  +  
Sbjct: 18  TGQDAHHLTKVVRLRPGEKIRVSVSDGSNYICEVSDYIEKDLVATVVEEVPS-TELPNKI 76

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136
           Y+F  I K +R++ +I+K VE+G   I PV      +    +     ++R ++   SAAE
Sbjct: 77  YLFQAIPKGDRMETIIEKCVELGAYEIIPVEMKNCIVKLDDKKKKSKVERYQSIAKSAAE 136

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P I+   + +   +       I+   E+  G +++ + L  +    ++ + IG
Sbjct: 137 QSKRSIIPGIHSVMSFKEAFEYAKALDVILLPFESKNGMKDTYDCLAGLKKGQSIGVFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           PEGG+   E E +     V  +SLG RILR+DTAA+ +++++   C ++
Sbjct: 197 PEGGFAPNEIEMVED--SVQLISLGHRILRTDTAAICSLSMLMLKCEEF 243


>gi|227538374|ref|ZP_03968423.1| protein of hypothetical function DUF558 [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241756|gb|EEI91771.1| protein of hypothetical function DUF558 [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 237

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 9/212 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           ++  +   VLR+   D + L +G+ G + ++I  ++  ++    +E Q   Q     +  
Sbjct: 21  EESKHAVRVLRLANRDQVHLIDGRGGFYRAEIIDAHPKRTALQIIEIQEAFQKPSYHLHM 80

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K   R ++ ++K+ E+G+  I PVI+ +++      DR+    ++A +Q     +
Sbjct: 81  AVAPTKNIERFEWFLEKATEVGVQEITPVISEHSERKEVKPDRLNKVIVAAMKQSYKAYM 140

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEGGYH 201
           P + P  TL   LK  +   Q+          +S +K       P  +  ILIGPEG + 
Sbjct: 141 PKLNPAITLTNFLKQQE---QVSAQKAIAHCVDSEKKYLGQVFTPQQDYVILIGPEGDFS 197

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +EE     S  FV P+SLG   LR++TAA+ +
Sbjct: 198 TEEISKTISSGFV-PISLGEARLRTETAALTS 228


>gi|238924264|ref|YP_002937780.1| hypothetical protein EUBREC_1902 [Eubacterium rectale ATCC 33656]
 gi|238875939|gb|ACR75646.1| protein of unknown function DUF558 [Eubacterium rectale ATCC 33656]
          Length = 246

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ I + +     +   IS V    +   ++    + T+  +  
Sbjct: 19  TGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSVLDDEVIAAIDSADETGTELDNHI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
            ++  + K ++++ +IQK+VE+G+  I PV  +        +     + R +    SAA+
Sbjct: 79  VLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEKKAAKKLQRWQAIAESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +  P T +  LK   + +  +V  +   G + + E +  +     + +++G
Sbjct: 139 QSKRTVIPTVKQPVTYKEALKIASELDSTLVPYENERGMDATREIMGQLKAGQTIGVVVG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+  EE   +     +  +SLG RILR++TA +AA+A++
Sbjct: 199 PEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240


>gi|116620083|ref|YP_822239.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223245|gb|ABJ81954.1| protein of unknown function DUF558 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 237

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 18/229 (7%)

Query: 8   KRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +R FVD    I+    +  GD+  +L  VLR++ G    + + +   +L++I+   G+ +
Sbjct: 4   RRFFVD---AIRNGAAELRGDEARHLTRVLRVESGQRFEISDNQHA-YLAEIAEAKGERV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
            F+V            +    + +K +R ++MI+K+ E+G+  I PV    T+   +   
Sbjct: 60  VFRVLEAIAPVPMPVRITLCAAIVKFDRFEWMIEKATELGVERILPVEATRTERGLFEAS 119

Query: 126 RVRTYTIS-----AAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLE 179
           R R+   +     +++Q   + +P I P   LE  LK   +H     F DE  G+   L 
Sbjct: 120 RKRSERWTRIARESSQQSRRVQIPEILPAVRLEECLKETAEHR---YFLDE--GAAPPLV 174

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +         VA+LIGPEGG+   E+    S  +  P+SLGP +LR++T
Sbjct: 175 REIPAERSDTVALLIGPEGGWTEAERGLAVSAGWC-PVSLGPLVLRAET 222


>gi|168008547|ref|XP_001756968.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691839|gb|EDQ78199.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 353

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD- 81
           +  GD++ ++  VLR+   D I LF+G  G     +  V K+    V   +R     +  
Sbjct: 122 RVDGDEFWHMTRVLRLNVNDRIELFDGNGGLVEGTLLKVTKNCAEVVATTARRVLPLTGP 181

Query: 82  ---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQ 137
              V   F  +K  R D++++K  E+G   + P++T R         DR    +++A +Q
Sbjct: 182 NWHVAAAFGNLKGGRADWLVEKCTELGAQTLTPLLTQRSASVAEQRNDRWNRISMAATKQ 241

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    +  PT L+ LL        + F         +   L     +    +LIGPE
Sbjct: 242 CQRLHALDVREPTQLKHLLAE-VKKADVAFLAAAGAPPLAQSLLQRPECLRGGLLLIGPE 300

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G +  EE E L       P+ LG   LR +TAA+A +  V
Sbjct: 301 GDFTPEEIELLID-AGAMPVGLGQLRLRVETAAIAILTTV 339


>gi|323143545|ref|ZP_08078222.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066]
 gi|322416608|gb|EFY07265.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066]
          Length = 226

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 21/224 (9%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI- 89
           +L  VLR KEGD   +F+G   E+ +K+   G     ++  ++ + + +S +Q     + 
Sbjct: 12  HLCRVLRFKEGDLFNIFDGIGHEFKAKLVRSGNKAAAQI-LETVANSSESPLQIELGQVI 70

Query: 90  -KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            + +++D  +QK+VE+G+  I P+      +    + +   +D  +   +SA EQ     
Sbjct: 71  SRGDKMDLTVQKAVELGIFEITPLTSIRCNVKLDEKRSFKKVDSWQKIAVSACEQSGRSF 130

Query: 143 LPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
           +P +   T L    K W   D     +  D    S   L+ L   A    + +LIGPEGG
Sbjct: 131 VPKVNEITDL----KTWCSKDREALNLTLDPL--SSLRLKNLKPTA--AKIRLLIGPEGG 182

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              +E        F+  +SLGPRILR++TAA+ A++++ +  GD
Sbjct: 183 LSQDEINDAAENGFIG-VSLGPRILRTETAALVALSILGSHFGD 225


>gi|300770808|ref|ZP_07080686.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762365|gb|EFK59183.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 237

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 7/203 (3%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           VLR+   D I L +G+ G + ++I  ++  ++    +E Q   Q     +    +P K  
Sbjct: 29  VLRLANRDQIHLIDGRGGFYRAEIIDAHPKRTTLQIIEIQEAFQKPSYHLHMAVAPTKNI 88

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
            R ++ ++K+ E+G+  I PVI+ +++      DR+    ++A +Q     +P + P  T
Sbjct: 89  ERFEWFLEKATEVGVQEITPVISEHSERKEVKPDRLNKVIVAAMKQSYKAYMPKLNPAMT 148

Query: 152 LEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS 210
           L   LK  +  + Q   A      +  L ++       +  ILIGPEG + +EE     S
Sbjct: 149 LTNFLKQQEQVSAQKAIAHCVDSEKQYLSQVFTPQQ--DYVILIGPEGDFSTEEIGKTIS 206

Query: 211 LPFVTPLSLGPRILRSDTAAVAA 233
             FV P+SLG   LR++TAA+ +
Sbjct: 207 SGFV-PISLGEARLRTETAALTS 228


>gi|326520946|dbj|BAJ92836.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 347

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 23/223 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-----QTKQS 80
           GD++ ++  VLR+   D + LF+G  G     I  V K+    VE    +     Q  Q 
Sbjct: 115 GDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKN-GSDVELLENARLIAPQGIQW 173

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCD 139
            V   F  +K  R D++I+K  E+G  ++ P++T        N +DR++   ++A +QC 
Sbjct: 174 HVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQ 233

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-------I 192
            +    + PP  +        H+  +  +        S E    ++ +P          +
Sbjct: 234 RVHDMSLKPPIQI--------HDLPLAVSQSKLAFLASAEAPPVLSVLPKCGSEEESGLL 285

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +IGPEG +  EE + L +   V P+ LGP  LR +TA ++ ++
Sbjct: 286 IIGPEGDFTEEEVKVLKAAGAV-PVGLGPCRLRVETATISLLS 327


>gi|242038259|ref|XP_002466524.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor]
 gi|241920378|gb|EER93522.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor]
          Length = 287

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 20/221 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDG---EWLSKISYVGKSIRFKVEYQ-SRSQTKQSD 81
           GD++ ++  VLR+   D + LF+G  G    ++ K+   G  +    + +    Q  Q  
Sbjct: 65  GDEFWHMTRVLRLGINDRVELFDGAGGLAEGFIHKVDKGGSDVELLEDARIVAPQGIQWH 124

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDI 140
           V   F  +K  R D++I+K  E+G  ++ P++T        N +DR++   ++A +QC  
Sbjct: 125 VFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQR 184

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA------ILI 194
           +    + PP  +  LL         V +        S E    ++ +P  +      +++
Sbjct: 185 IHEMSLKPPIQISHLLP--------VVSQSKLAFLASAEAPPLLSVLPKSSTEQSGLLIV 236

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GPEG +  EE  +L +     P+ LGP  LR +TA ++ ++
Sbjct: 237 GPEGDFTEEEVHSLKAA-GAAPVGLGPCRLRVETATISLLS 276


>gi|187735952|ref|YP_001878064.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426004|gb|ACD05283.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 245

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 11/223 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQ 83
           GD+ H+ A VLR+K+GD+ ++F+G      + ++   +S  +      +       + + 
Sbjct: 20  GDEAHHAAKVLRLKQGDSCIVFDGCGRAAHAVVAEPPRSSGVLLVPGEECPPSPPVAHLT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
              +  K   +D +IQKSVE+G+ AI P++T  T      +       + +   + A +Q
Sbjct: 80  LCQAVPKGANMDLIIQKSVELGVSAIVPLVTDRTIVRLNAREAEAKRQKWQRIALEACKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAILIG 195
           C   TLP +  P      L+        + A    G     E L       + + ++L+G
Sbjct: 140 CGQNTLPEVALPVPFAEWLRGGIPEGLNIIASLAPGVRPVREVLETARSRSVRHASLLVG 199

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           PEG +   E        FV P++LGP +LR +TAA   +A ++
Sbjct: 200 PEGDFTDRETAMALEAGFV-PVTLGPIVLRVETAAFFGLAAMR 241


>gi|167747076|ref|ZP_02419203.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662]
 gi|317471891|ref|ZP_07931226.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|167654036|gb|EDR98165.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662]
 gi|316900664|gb|EFV22643.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 245

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 12/222 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVE--YQSRSQTKQSDV 82
           GD  +++ +VLRMK G+ +LL +    E+ S+ +S  G  I+ ++   + + S+ K   V
Sbjct: 20  GDDVNHIRNVLRMKAGERVLLCSESGMEYESELVSLEGDKIQARILDIHGAESELKTRIV 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
            +   P K +++D +IQK++E+G   I PV  +        +      +R     +SAA+
Sbjct: 80  LFQGLP-KGDKMDLVIQKAIELGASEIVPVKMKRCVVKLDEKKARKKTERWNAVALSAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +    +     +       ++   E   G E S + +  +    +V I IG
Sbjct: 139 QSKRGMIPRVSRVYSFHEAAEMARGLSMVLVPYEAAEGMEYSRQLVKEVKGRESVGIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+   E E L        LSLG RILR++TA +A ++++
Sbjct: 199 PEGGFEPAEIEELRE-SGGQILSLGKRILRTETAGMAMLSVL 239


>gi|118581365|ref|YP_902615.1| 16S ribosomal RNA methyltransferase RsmE [Pelobacter propionicus
           DSM 2379]
 gi|118504075|gb|ABL00558.1| protein of unknown function DUF558 [Pelobacter propionicus DSM
           2379]
          Length = 248

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDV 82
           GD + ++  VLR+  G ++ L + +  E    I  V K    +R        +   ++  
Sbjct: 22  GDLFSHMVRVLRLGPGASVTLVDEQGAEHRGSIQQVEKERVMVRIAGSVVPGNGEGETPA 81

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIR-----PVITRYTQNTHYN-MDRVRTYTISAA 135
             I   + K  + D ++QK  E+G+   R       + R  +  H   ++R    T  AA
Sbjct: 82  ITICQALPKGEKTDLILQKGTELGVHDFRLFAGCRSVARVREEQHKGKLERWNRITAEAA 141

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSLEKLHAIAHIPNVAIL 193
            QC    +P +      E    + DH  +++    +   G +N+LE+L   A   +  + 
Sbjct: 142 RQCGRRRIPAVSWFPDAERAAGSCDHELRLLLWEGERRQGLKNALEQLPRPA---SAIVA 198

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+   E        F+ P+SLG R+LR++TA++A  A++Q I G+
Sbjct: 199 IGPEGGFDPREVRCFIGHGFL-PVSLGKRVLRTETASLAITAILQYIWGN 247


>gi|297584653|ref|YP_003700433.1| hypothetical protein Bsel_2365 [Bacillus selenitireducens MLS10]
 gi|297143110|gb|ADH99867.1| protein of unknown function DUF558 [Bacillus selenitireducens
           MLS10]
          Length = 250

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 19/228 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSD 81
           +GD  H+++ V+RM +GD I+  + +G  G    + +  G   R   E ++   +T +  
Sbjct: 19  TGDDAHHISKVMRMTDGDRIICCMPDGSCGTATIQSTAEG---RVHAELETWLKETSEMP 75

Query: 82  VQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPV-ITRY-----TQNTHYNMDRVRTYTIS 133
           V+   +    K ++L+ +IQK+ E+G+ ++ PV ++R       +     + R R     
Sbjct: 76  VEVTLAQGLPKGDKLELIIQKATELGVSSVIPVQMSRSIAKIDEKKAGKKVVRWRKIAKE 135

Query: 134 AAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN 189
           AAEQ     +P I  P   T ++ L++ +D        +   G+ ++L  L + +     
Sbjct: 136 AAEQAHRNRVPCISEPVSFTRVQGLVEEYDLVIAAYEEEGKAGNHHALPVLLNGLLPGQR 195

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + ++IGPEGG+  EE E L     V  +S+GPRILR++TA +  +A V
Sbjct: 196 ILVIIGPEGGFSPEEIEKLER-AGVRSVSIGPRILRTETAPLYVLAAV 242


>gi|332704197|ref|ZP_08424285.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554346|gb|EGJ51390.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 248

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 6/216 (2%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTKQSDVQ 83
           SG+  H L  VLR   G  + LF+G+  + L + IS   K    ++E  +  +  Q+++ 
Sbjct: 22  SGETQH-LIKVLRTPLGATVRLFDGQGRDGLFRLISADRKGALLELESVTVHERHQTELV 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDIL 141
                 K  R D++++K+VE+ +  +       +Q        D  +   ++AA+QC   
Sbjct: 81  VALGWNKAGRRDWLLEKAVELEVAGLWFWQAGRSQGHVPEQPKDSWQPKLVAAAKQCANP 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            LP +   + L+FL+       +     E  G E  ++ +  +    NV +++GPEGG  
Sbjct: 141 WLPELATLSDLKFLVDASKRYPRRFLLWEAPG-EKLIDPVLDLGGQGNVLMVLGPEGGLE 199

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             E ETL S  F+T  SLG RILR +TAA+  M L 
Sbjct: 200 KAEAETLISAGFMT-RSLGSRILRWETAALLGMGLA 234


>gi|77919149|ref|YP_356964.1| hypothetical protein Pcar_1549 [Pelobacter carbinolicus DSM 2380]
 gi|77545232|gb|ABA88794.1| conserved hypothetical protein TIGR00046 [Pelobacter carbinolicus
           DSM 2380]
          Length = 259

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 14/162 (8%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTL 143
           +  R + ++QKSVE+G+  I P +  ++              R     + AA+QC    +
Sbjct: 100 EKERFELILQKSVELGVQRIVPFVCSHSTTLAERDAGQRKSHRWPEVVLRAAKQCRRGDI 159

Query: 144 PFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           P + P  + + +L+    WD N  +   D    ++  L        I + +I+IGPEGG+
Sbjct: 160 PELGPVMSFDQVLEEVSMWDLNLMLYEGD----AQARLHDAFTSKDISSASIIIGPEGGF 215

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
              E +       +T +SLGPRILR++TAA+A  ALVQ + G
Sbjct: 216 ARHEAQQASDAGILT-VSLGPRILRTETAAIAGAALVQFMLG 256


>gi|16329261|ref|NP_439989.1| hypothetical protein slr0722 [Synechocystis sp. PCC 6803]
 gi|6226389|sp|P72667|RSME_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|1651741|dbj|BAA16669.1| slr0722 [Synechocystis sp. PCC 6803]
          Length = 303

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 4/235 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL V     I+     +  Q HYL  VLR+++GD  ++ +G  G W ++++ +       
Sbjct: 67  RLVVAPEQIIEATVTLTTAQLHYLQRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQL 126

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           +E  S        V    +  K +  + +I+   E+G  A +P++T  T  + +   ++R
Sbjct: 127 LETVSEQNELPLPVTLAIALPKGSGFEEIIRPCTELGATAFQPLLTERTLLKPSQNKLER 186

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +     AAEQ +   LP +  P T    ++       +     T  +   L      ++
Sbjct: 187 WQRIVTEAAEQSERQWLPPVAAPLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSN 246

Query: 187 IP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +P  + +  GPEGG+   E     +  F  P+SLG RILR+ TA   A+A + A+
Sbjct: 247 LPAQIVLATGPEGGWTDNEISLAIAKGF-QPVSLGKRILRAVTAPTVALAQINAL 300


>gi|297180287|gb|ADI16506.1| uncharacterized protein conserved in bacteria [uncultured bacterium
           HF4000_05M23]
          Length = 274

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 28/244 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDV 82
           G     L  VLR+  GD I LF+G   EW  +I  V +   ++R     +S  +   + V
Sbjct: 30  GQLARQLKTVLRVGIGDRIGLFDGSGLEWEVQIDQVDRTEVAVRLISTVESVPEPF-ARV 88

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTYTISAAE 136
             +    +  R++  IQK  E+G     PV++   Q       +   +DR R   I AAE
Sbjct: 89  TMLLGLARPERIELAIQKCTELGAVRFIPVLSERVQGGVTGAPSGSRLDRWRRIAIEAAE 148

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQI-VFADETCGSENSL-EKLHAIAHIP------ 188
           QC    +P +  P  +   + +     Q+    +E  G  + L E L +I          
Sbjct: 149 QCGRAVVPPVDEPLPVMDAVNSQLAARQLFCMWEERTGDSSPLGEALKSIETQALEKNDG 208

Query: 189 ---------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                     +A+LIGP GG    E   +      + ++LGPR+LRS+TAA+  M+ +  
Sbjct: 209 QRETGTGGCEMAVLIGPPGGVSHAEASAIQEA-GASLVTLGPRVLRSETAAIVVMSAILY 267

Query: 240 ICGD 243
             GD
Sbjct: 268 EMGD 271


>gi|218288633|ref|ZP_03492910.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241290|gb|EED08465.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 250

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 13/248 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L RLF+D  +    +    G+  H+ + VLR + G+ +L+ +  +G + ++I+ V +   
Sbjct: 2   LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIADV-RPGE 59

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMG------MGAIRPVIT-RYT 117
             V  + R+ + +    ++      K  ++D ++QK  E+G        A R V+     
Sbjct: 60  ICVHLRERAPSNEPKRSFVLVQGLAKGEKMDTILQKCTEIGAWGFVVFEAERSVVRLSGA 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNC-QIVFADETCGSE 175
                 + R R     AA Q     +PF+ + P+    L    +H    ++  DE   + 
Sbjct: 120 AKVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLAALTEHGVDHVLVLDEEERAN 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L  + A       A+++GPEGG    E+           ++LGPRILR++TA   A+A
Sbjct: 180 GILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALA 239

Query: 236 LVQAICGD 243
           +  A  GD
Sbjct: 240 IALAEWGD 247


>gi|153953539|ref|YP_001394304.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium kluyveri DSM
           555]
 gi|219854161|ref|YP_002471283.1| hypothetical protein CKR_0818 [Clostridium kluyveri NBRC 12016]
 gi|146346420|gb|EDK32956.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219567885|dbj|BAH05869.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 251

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
            GD   ++  VLR+K GD + + N    E+L  I  + +  +   +  + +   +     
Sbjct: 19  KGDDLKHIHKVLRLKIGDKVNINNCHGKEFLGVIDSIEREKVTVNIVEELKLYNESPLKV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQ 137
           Y+F  + K++++D ++QK+ E+G+  I P+IT              +DR     + A +Q
Sbjct: 79  YLFQGLPKSSKMDLVVQKATELGIWEITPIITNRVAIKGDFKEFKRVDRWNKIALEACKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLHAIAHIPNVAILI 194
           C    +P + PP   E LLK   +   IV     +++ G +  ++ +     I ++AI+I
Sbjct: 139 CKRSIIPAVKPPIYFEELLKYLSNMDLIVVPYEMEKSIGIKKVIDSIEYRDSIGDIAIVI 198

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG+  EE E L ++     ++LGPRILR++TA     AL+    GD
Sbjct: 199 GPEGGFEEEEIEELKNIS-SKIVTLGPRILRTETAGFVCTALLMYELGD 246


>gi|242242852|ref|ZP_04797297.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           W23144]
 gi|242233694|gb|EES36006.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           W23144]
          Length = 253

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 20/226 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTK-QSDVQY 84
           + YH++ +V+R KEG NI++    +  +  K IS   +SI  K+E + +  T+   ++  
Sbjct: 25  EDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQSIEIKLEEKQQINTELPQNITI 84

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
               IK ++ ++MIQK+ EMG          R V+          + R +     AAEQ 
Sbjct: 85  CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNVSKVEKKLSRWQKIIKEAAEQS 144

Query: 139 DILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VA 191
             LT+P I   + L+    ++  +D+   ++ A E       L +    I        V 
Sbjct: 145 YRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYEEQAKHGELSQFKQTIKQFKTQDRVL 201

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E      +   T + LGPRILR++TA + A++ V
Sbjct: 202 IIFGPEGGLSDSEIALFGDVS--TLVGLGPRILRAETAPLYALSAV 245


>gi|282859154|ref|ZP_06268280.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010]
 gi|282588072|gb|EFB93251.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010]
          Length = 262

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 112/233 (48%), Gaps = 14/233 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQ 76
           K Q +   ++  +   VLRMKEGD + L +G    + +++     K   + + E   +++
Sbjct: 13  KAQTELPTEEALHAVRVLRMKEGDELFLMDGVGCFYRAEVVLTSAKRCAYAIKETLPQTK 72

Query: 77  TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135
           T +  +    +P K   R+++M++K+ E+G+  I  +  R+++     +DR+    ISA 
Sbjct: 73  TWEGRIHLAIAPTKDMGRIEWMVEKATELGIDEITFLDCRFSERKQIRIDRIEKIVISAM 132

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKLHAIAHIP---- 188
           +Q      P +    + +  ++  + N    +   A   C   N ++K    + I     
Sbjct: 133 KQSRKGWKPIVNEMVSFKEFIQTMETNASQQEYSLASFICHCYNEIDKNDFFSVITEQEN 192

Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              +V IL+GPEG +  +E +   +  F + ++LG   LR++TA + A+A+ Q
Sbjct: 193 LKDDVLILVGPEGDFSIDEVQLALAAGFQS-VTLGESRLRTETAGLNAIAMTQ 244


>gi|46447268|ref|YP_008633.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400909|emb|CAF24358.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 240

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 117/242 (48%), Gaps = 24/242 (9%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----GK 63
           +R F    + +        +++H+LAHV+R K+G+ + L NGK    L++ + +    G+
Sbjct: 4   ERFFTSEEISLHQHVLLKDNEFHHLAHVMRAKKGERVELVNGKS--ILAQATVLDIHKGQ 61

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-- 121
           ++   +++    +   S +    + +K +RL ++++K  E+G+        + +      
Sbjct: 62  AVLL-IDHIKTERMDSSRLILAQAYVKPDRLAFILEKGTELGVDEFWLFPGQLSSQKEIY 120

Query: 122 -YNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            +  +R ++  I+A +QC  LTLP  ++ P      L  WD     +F+    G  +   
Sbjct: 121 PHQQERAQSLIIAAMKQCGRLTLPKILFKPA-----LNQWDS----IFSQAFFGDLDPHA 171

Query: 180 KLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              A A+  +   +    GPE G+   E++ L  +  V  + L   ILR+DTA++AA+++
Sbjct: 172 PFLAAANEGSSYPIIFFTGPESGWSDAERQQLKKMG-VQGVRLHTNILRTDTASIAALSI 230

Query: 237 VQ 238
           +Q
Sbjct: 231 IQ 232


>gi|30022390|ref|NP_834021.1| surface protein [Bacillus cereus ATCC 14579]
 gi|29897948|gb|AAP11222.1| surface protein [Bacillus cereus ATCC 14579]
          Length = 245

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 20/240 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYD-TCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            E S   + L  +     + I+ GPEGG   EE   L    FV P SLGP+  ++   AV
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPKNFKNRNGAV 235


>gi|124025432|ref|YP_001014548.1| hypothetical protein NATL1_07251 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960500|gb|ABM75283.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. NATL1A]
          Length = 254

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 18/246 (7%)

Query: 8   KRLFVDFPLC---IKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +RLF+        I + G  K + ++ HYL  V+RM+  D + + +GK   W +KI    
Sbjct: 5   RRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKIVE-K 63

Query: 63  KSIRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
           K+I+    +    Q  +++  +  I   I     +  +Q S E+G+  I+P+I++ +   
Sbjct: 64  KAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKGFENFLQMSCEIGVDIIQPLISKRSVVK 123

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           + ++  + R +     A EQ + L  P +    T    + +     Q+ FA      E+ 
Sbjct: 124 ECSNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--ATRIEDL 181

Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            + +  +   P     V ++IGPEGG++ EE+E   +  FV  +S+G  ILR+ TAAV+A
Sbjct: 182 PDCVTWVKETPHEVNQVWVVIGPEGGWNKEEEELAFNAGFVG-VSMGETILRTSTAAVSA 240

Query: 234 MALVQA 239
           + ++ +
Sbjct: 241 LQVMTS 246


>gi|291525040|emb|CBK90627.1| RNA methyltransferase, RsmE family [Eubacterium rectale DSM 17629]
          Length = 246

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ I + +     +   IS +    +   ++    + T+  +  
Sbjct: 19  TGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEVIAAIDSADETGTELDNHI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
            ++  + K ++++ +IQK+VE+G+  I PV  +        +     + R +    SAA+
Sbjct: 79  VLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEKKAAKKLQRWQAIAESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +  P T +  LK   + +  +V  +   G + + E +  +     + +++G
Sbjct: 139 QSKRTVIPTVKQPVTYKEALKIASELDITLVPYENERGMDATREIMGQLKAGQTIGVVVG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+  EE   +     +  +SLG RILR++TA +AA+A++
Sbjct: 199 PEGGFAPEEIALVDENATMHRISLGRRILRTETAGLAALAML 240


>gi|83720201|ref|YP_441739.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
           thailandensis E264]
 gi|257137908|ref|ZP_05586170.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
           thailandensis E264]
 gi|83654026|gb|ABC38089.1| conserved hypothetical protein TIGR00046 [Burkholderia
           thailandensis E264]
          Length = 256

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 56/272 (20%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 9   AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQL------ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R    + D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 62  ----VEIDKRGALARIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 114

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            P      V+    +     +   R    ++ EQC    +P + P    +  L       
Sbjct: 115 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPGVAPVRGFDAWLD------ 168

Query: 164 QIVFADETCGSENSLEKLHAIAHIP-----------NVAILIGPEGGYHSEEKETLHSLP 212
                D     E  L  L   A +P           +V +LIGPEGG   +E++   +  
Sbjct: 169 --ALPDAPAAGELRL-LLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARG 225

Query: 213 FVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           F   LSLGPR+LR++TA  A +A + A  G W
Sbjct: 226 FAA-LSLGPRVLRTETAGAAVLAALAARWGGW 256


>gi|121611717|ref|YP_999524.1| 16S ribosomal RNA methyltransferase RsmE [Verminephrobacter
           eiseniae EF01-2]
 gi|121556357|gb|ABM60506.1| protein of unknown function DUF558 [Verminephrobacter eiseniae
           EF01-2]
          Length = 273

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 34  HVLRMKEGDNILLF-NGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKT 91
            VLR++ GD I LF  G+ GE+ + +  +G+S +R ++    R + +     ++ + I  
Sbjct: 30  QVLRLQPGDGITLFHGGQGGEFDATVLRMGRSDVRVQLGAHHRIEREAPRAVHLLAGIMA 89

Query: 92  N-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLP 144
           N R+D++++K+ E+G  +I P++T  +      +     +   +   ++A EQC    +P
Sbjct: 90  NERMDWLVEKATELGAASITPLLTERSVLKLRGERADKKIAHWQAVAVAACEQCGRNRVP 149

Query: 145 FIYPPTTLEFLLKNWDHNC------QIVFADETCGSENSLEKLHAIAHIPNVA------- 191
            ++P T L   ++     C      +++ A     +             P          
Sbjct: 150 PVHPATALAHWVRAQAAACVQQTALRLLLAPGPGAAPLHSAAAADRGLRPAADRDERPLY 209

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           IL G EGG  S E++      F TP++LGPR+LR++
Sbjct: 210 ILSGAEGGLSSAEQDLARQHGF-TPVTLGPRVLRAE 244


>gi|116490649|ref|YP_810193.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1]
 gi|290890063|ref|ZP_06553146.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429]
 gi|116091374|gb|ABJ56528.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1]
 gi|290480254|gb|EFD88895.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429]
          Length = 253

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 20/226 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
           K   K + D +H+L  VLR+K+ D + L  G+   +L +++ +     F       S+  
Sbjct: 18  KISKKNNPDVFHHLKDVLRVKDKDLVELVAGQSA-YLVRVNEISAMEVFFNRLDKLSKDP 76

Query: 79  QSDVQ-YIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130
           +  V+  I  P +K++ LD++IQK+ E+G+  I  ++T ++ +          + R    
Sbjct: 77  EIPVKTTIVVPLLKSDHLDWLIQKATELGVFKI--ILTNFSYSVVKDIKIEKKLQRYEKI 134

Query: 131 TISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADET--CGSENSLEKLHAIAHI 187
              AAEQ   L +P  IY    +E    + DH   IV  +E+   G +++L K+  +A +
Sbjct: 135 VKGAAEQSHRLLVPEIIYEKKFIEQAGLS-DHQIGIVAWEESAKAGEKSNLFKMIRLAKL 193

Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            +    +  + GPEGG   +E + L S  F+T   LGPRILR++TA
Sbjct: 194 DSKFNEIVAVFGPEGGISKKEIKKLESSGFITA-GLGPRILRAETA 238


>gi|259909605|ref|YP_002649961.1| hypothetical protein EpC_29800 [Erwinia pyrifoliae Ep1/96]
 gi|224965227|emb|CAX56759.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|310766488|gb|ADP11438.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
          Length = 243

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 22/250 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++   PL        S +  H++  VLRM  G  + LF+G    + ++I    K +
Sbjct: 2   RIPRIYQPEPLQTGNDIALSEEAAHHVGRVLRMGTGQMLELFDGTGLVFAAEIIQADKKN 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +  K+   SR  +++S +      +  +  ++++ IQK+VE+G+  I P+   +++    
Sbjct: 62  VCVKINA-SREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGV 117

Query: 123 NMDRVR---------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D  R            I+A EQC    +P +     L+      +   ++        
Sbjct: 118 KLDAERLAKKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAWCAEPEPGLKLNLHPRAKH 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           S N+L        +  V +LIGPEGG  ++E  T+ +    T + LGPR+LR++T A+ A
Sbjct: 178 SINTLP-----LPVERVRLLIGPEGGLSADEI-TMTAQHGFTDILLGPRVLRTETTALTA 231

Query: 234 MALVQAICGD 243
           +  +Q   GD
Sbjct: 232 ITALQVRFGD 241


>gi|291543373|emb|CBL16482.1| RNA methyltransferase, RsmE family [Ruminococcus sp. 18P13]
          Length = 239

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 15/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F   P     Q   +G+  H++   LRM+ G+ + +  G   ++  +I  + G  +
Sbjct: 1   MPRFF--LPALDPVQPVITGEDAHHIGFSLRMRPGEQLTVCAGGV-DYDCRIREITGDCV 57

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             +V+ Q+    + +    ++  + KT++L+ ++QK+VE+G   I PV+TR   +     
Sbjct: 58  YLEVQGQAPCAAEPTVALTLYQALPKTDKLEQIVQKAVELGAARIVPVLTRRCISRPDPG 117

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++    +AA+Q     +P +    T    L+        V   E  G   S+
Sbjct: 118 QFSKKQQRLQKIAHAAAKQAGRGIIPEVGGMLTFSQALEELGGQQLPVMLYEAGGV--SM 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +L  +    ++ +L+G EGG+  EE      L  + P+ LGPRILR +TA + A++L+ 
Sbjct: 176 SQL-TVPRTGSIGVLVGSEGGFDPEEAAQAR-LAGIQPVWLGPRILRCETAPLTALSLLM 233

Query: 239 AICGD 243
            + G+
Sbjct: 234 YLSGN 238


>gi|206561729|ref|YP_002232494.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
           J2315]
 gi|198037771|emb|CAR53715.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 246

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 113/265 (42%), Gaps = 46/265 (17%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD  L          D   ++  VLR++ GD + LF+G  G++ +++        
Sbjct: 1   MPRFFVDAALRADATLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL-------- 51

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAIRP 111
             VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+ P
Sbjct: 52  --VEVDKRSALVQVDS---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVP 106

Query: 112 ------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI 165
                 V+    +     +   R    ++ EQC    +P + P   + F    W      
Sbjct: 107 LSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAP--VIGF--SAWLDALPA 162

Query: 166 VFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPLSL 219
             AD       S       A +P+      V +LIGPEGG   +E+    +  F T LSL
Sbjct: 163 APADGELRLLLSPRASIPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGF-TALSL 221

Query: 220 GPRILRSDTAAVAAMALVQAICGDW 244
           GPR+LR++TA  A +A + A  G W
Sbjct: 222 GPRVLRTETAGAAVLAALAARWGGW 246


>gi|87306779|ref|ZP_01088926.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM
           3645]
 gi|87290958|gb|EAQ82845.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM
           3645]
          Length = 240

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 17/228 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--SIR 66
           R F++ P+   T  +  G + H+L HV+R K G  + LF+    ++ ++I  VG+  +  
Sbjct: 4   RFFLEAPITGDTV-EIDGPEAHHLLHVMRAKIGAQVTLFDDSGAQFAAEIIAVGRKSATA 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNM 124
             V  Q  S+     +    +  K +R  ++++K VE+G+  + P+ T  + +     ++
Sbjct: 63  RVVARQEVSRELPISLTIAAALPKGDRQRWLVEKCVELGVTDLTPLDTERSVSLKKEKSL 122

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSENSLEK 180
           D++R Y I A++QC+   L  I     L      W+H      +++   + C S   L  
Sbjct: 123 DKLRGYVIDASKQCERNRLMRIADSAALPAF---WNHASLSAVRLIADPDACESVADLLP 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               A   +V + IGPEGG+  +E +   S  +     LG RILR +T
Sbjct: 180 ----AEPTDVIVAIGPEGGFSPDEYQAALSAGW-RGFRLGKRILRIET 222


>gi|291541829|emb|CBL14939.1| RNA methyltransferase, RsmE family [Ruminococcus bromii L2-63]
          Length = 242

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 17/223 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G+   +++ VLRM+ GD+I L +    ++  KIS + +    +V     SQ    +   +
Sbjct: 19  GENAKHISKVLRMRTGDDITLVSPNKTQYECKISLITQG---EVTVDIISQKPCENEPDV 75

Query: 86  FSPI-----KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           F  +     K +++D+++QK  E+G+  I P+I+         ++     +R +   + A
Sbjct: 76  FVTLYQALPKGDKMDFIVQKCTELGISRIVPMISARCVSRPDEKSLKKKCERWQKIALQA 135

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           A Q     +P + P  + +   +    N + VF  E  G   S+ K+        V + I
Sbjct: 136 AMQSRRGIIPEVTPCISFKEATEQTKQNEKTVFFYEMGG--ESVRKILNGTKPKTVGMFI 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G EGG+   E +++ ++      +LG RILR++TA +AA++++
Sbjct: 194 GSEGGFEQSEVDSVTAIGG-QAATLGKRILRAETAPLAALSII 235


>gi|159901854|gb|ABX10589.1| hypothetical protein 5H12_27 [uncultured planctomycete 5H12]
          Length = 239

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 18/214 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           SG+  H++ +V+RMK GD+++LF+G + E+   I+   K     +I+  +E  SR Q   
Sbjct: 18  SGESAHHIVNVMRMKTGDSVILFDGTNREFTGIITETDKKVVTIAIQSVIEV-SREQKIT 76

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTH-YNMDRVRTYTISAAEQ 137
           S +   F   K +R  +MI+K VE+G+ ++ P+ T R   N    ++++++ + + A++Q
Sbjct: 77  STLAVAFP--KGDRQKFMIEKLVELGVDSLVPLQTQRSVVNVQPRSLEKIQRWIVEASKQ 134

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILI 194
           C    L  I P  T+ F   +W H  +          +  L    AI        V++ +
Sbjct: 135 CGRNQLMQIKP--TVSF--NDWIHGQREGPRFVAHPHDMRLTITDAIGQAQRAGVVSLTV 190

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           GPEGG+ S+E     +  + T ++LG  ILR +T
Sbjct: 191 GPEGGFTSQEIADAQNAGWST-IALGITILRIET 223


>gi|218132834|ref|ZP_03461638.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991707|gb|EEC57711.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC
           43243]
          Length = 245

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 14/223 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQ 83
           G   ++L +VLR+K G+ I+L +G + ++   IS +     I    E  +R +   S + 
Sbjct: 20  GADVNHLKNVLRIKCGEKIILSSGDNVDYYCTISEINDDSVIASIDETDTRGRELPSRI- 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K ++++ +IQK+VE+G   I PV  + +      +     + R    + SAA+
Sbjct: 79  YLFQGLPKGDKMELIIQKAVELGAYGIIPVAMKRSVMKLDSKKAESKVKRWNAISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHIPNVAILI 194
           Q     +P ++   T       +     +V     C  G + + +KL +I    ++ I I
Sbjct: 139 QSKRSIIPAVHDVMTFA-QAAEYAKTLDMVLLPYECADGMQATKDKLSSIKPGSSIGIFI 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+   E    H   F   ++LG RILR++TA +  ++++
Sbjct: 198 GPEGGFDGSELTIAHDAGF-DVITLGRRILRTETAGMMLLSVL 239


>gi|241767207|ref|ZP_04764956.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN]
 gi|241362156|gb|EER58240.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN]
          Length = 245

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 24/210 (11%)

Query: 34  HVLRMKEGDNILLFNGKD------GEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
            VLR++ GD I LF+G        GE+ + +  +G+S +R +V      + +     ++ 
Sbjct: 27  QVLRLQPGDGITLFHGGQDEGSPGGEFDATVLRMGRSDVRVQVGTHHAIEREAPRAVHLL 86

Query: 87  SPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
           + I  N R+D++++K+ E+G+ +I P++   +      +     +   +   ++A EQC 
Sbjct: 87  AGITANERMDWLVEKATELGVASITPLLAERSVLKLKGERAEKKLAHWQAVAVAACEQCG 146

Query: 140 ILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
              +P ++    L   L+          +++ +            LHA A    V  L G
Sbjct: 147 RNRVPVVHEAVDLAGWLRAHAPMPAQGMRLLLSLRA-----GTGPLHATAGTGAVVFLSG 201

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           PEGG  + E++   +  F  P++LGPR+LR
Sbjct: 202 PEGGLSAAEEDLALAQGF-APVTLGPRVLR 230


>gi|221213199|ref|ZP_03586174.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD1]
 gi|221166651|gb|EED99122.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD1]
          Length = 255

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEIDKRSALAQIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P +         L +     
Sbjct: 114 VPLSTARGVVKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDSLPPAP 173

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 174 ADGELRLLLSPRASIPFASLPDAPPAAP---VTLLIGPEGGLSPDEEAAARARGF-TALS 229

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255


>gi|257462827|ref|ZP_05627233.1| putative cytoplasmic protein [Fusobacterium sp. D12]
 gi|317060456|ref|ZP_07924941.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313686132|gb|EFS22967.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 237

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 19/217 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----D 81
           +  H+L HV R++ GD +   +G D E++ +I    K I  KV  Q   + + +     +
Sbjct: 21  EDLHHLLHVFRLEVGDKVRAVDG-DYEYICEIQ---KIIENKVHLQILEKKEDAFSLSVE 76

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDI 140
           +      IK +++D+ IQK  E+G+ +I P I  R         ++  T      +QC  
Sbjct: 77  IDAAICLIKNDKMDFCIQKLTELGIHSILPTIAKRCVVKLKEKKEKWNTIVKETMKQCQG 136

Query: 141 LTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL---HAIAHIPNVAILIGP 196
           +    I     L+ L L+N+D    ++     C  E+SL+ +     +     +  +IGP
Sbjct: 137 VKPTQIQEIIDLKQLPLENYD----LILLPYECEEEHSLKHVLRNGLLGATKKILYIIGP 192

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           EGG+  EE E L S      +SLG RILR++TAA+  
Sbjct: 193 EGGFEKEEIEHLAS-KGAKVVSLGKRILRAETAAIVV 228


>gi|228473117|ref|ZP_04057874.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275699|gb|EEK14476.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC
           33624]
          Length = 243

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 8/220 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85
           ++ +++  VLR K GD + + +G+   + ++I Y+  K     +   S + T    +   
Sbjct: 21  EESNHIHKVLRKKTGDLLFITDGRGYLYEAQIQYITDKKCTAHILSHSLAPTPAYHLHIA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  + P++  +++      +R     +SA +Q      P
Sbjct: 81  VAPTKMNERYEWFLEKATEIGVHEVTPILCDHSERKTIKTERFEKILLSAMKQSLQCYKP 140

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NVAILIGPEGGY 200
            + PP +L   L   + N    +    C     +  L  +  +P    N+ +LIGPEG +
Sbjct: 141 QLNPPISLLEWLDTIESNSVGKYVAH-CQEGARVLLLDRLEELPQETTNLWVLIGPEGDF 199

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              E +   S  F+ P+SL P  LR++TAA+ A + +  I
Sbjct: 200 SQREIQKACSKGFL-PISLSPNRLRTETAAIVACSCISDI 238


>gi|256426185|ref|YP_003126838.1| hypothetical protein Cpin_7237 [Chitinophaga pinensis DSM 2588]
 gi|256041093|gb|ACU64637.1| protein of unknown function DUF558 [Chitinophaga pinensis DSM 2588]
          Length = 234

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 8/213 (3%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           Y   VLR ++G+ +LL +G+ G + + I+     K I    +Y+       S V+   S 
Sbjct: 23  YCIMVLRHEKGNEVLLTDGRGGRYTTTITDDNRKKCIVTVNQYELMPPVA-SPVRIAISF 81

Query: 89  IK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            K ++R+++ ++K+ E+GM  I P++++ T+   +  DR     +SA  Q     LP + 
Sbjct: 82  TKNSSRIEWFLEKAAEIGMQMIIPLVSQRTEKEKFRADRFENILVSAMLQSQQYYLPELT 141

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
            P + + L++      Q+  A   C  E       A+    +  +LIGPEG +  EE   
Sbjct: 142 APASFDTLVQQPPAQ-QLFIAH--CLPEQKTHLWQAMQPGKDSLLLIGPEGDFTPEEIHL 198

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             +  F  P+SLG   LR++TA V    ++ A+
Sbjct: 199 ALNKGF-QPVSLGDNRLRTETAGVVGCTMMNAV 230


>gi|291279753|ref|YP_003496588.1| hypothetical protein DEFDS_1371 [Deferribacter desulfuricans SSM1]
 gi|290754455|dbj|BAI80832.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 236

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 124/231 (53%), Gaps = 28/231 (12%)

Query: 26  GDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           GD+ Y+Y+ +VLR+K G+ I+++  K  + + KI  + K    ++E ++    K+ + ++
Sbjct: 21  GDKGYNYVRNVLRLKVGEQIVVYT-KKSKGMYKIKNINKK-SIEIERENEILYKKPEYEF 78

Query: 85  IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQ 137
           +   S +K   LD++I+K  E+G  A + +I + T N+     +  ++R++   I+ A Q
Sbjct: 79  VVIQSAMKREYLDFVIEKYGELG--ATKVIIVK-TDNSVVKIENKTLERLKKLMINGAMQ 135

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
            D   LP I    ++    KN + N +    D+ C  E   +K+       +V+I IGPE
Sbjct: 136 ADYDYLPEIEYHDSI----KNLNVNTK----DKICFYEKENKKVFLDRISKSVSIFIGPE 187

Query: 198 GGYHSEEKETLHS--LPFVTPLSLGPRILRSDTAAVAAMALVQAI--CGDW 244
           GG++ ++   L+     F++P++    IL+++TA V    +++++  CG +
Sbjct: 188 GGFNDDDISILNEKGFRFLSPIN---GILKAETAGVLFAGMIKSLIDCGRY 235


>gi|221202461|ref|ZP_03575492.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2M]
 gi|221208082|ref|ZP_03581087.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2]
 gi|221171985|gb|EEE04427.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2]
 gi|221177634|gb|EEE10050.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2M]
          Length = 255

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R    Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEIDKRGALAQIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P +         L       
Sbjct: 114 VPLSTARGVVKLSGERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLAPAP 173

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   EE+    +  F T LS
Sbjct: 174 VDGELRLLLSPRASIPFASLPDAPPAAP---VTLLIGPEGGLSPEEEAAARARGF-TALS 229

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255


>gi|27468182|ref|NP_764819.1| hypothetical protein SE1264 [Staphylococcus epidermidis ATCC 12228]
 gi|57867034|ref|YP_188721.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
           epidermidis RP62A]
 gi|251810994|ref|ZP_04825467.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|293366462|ref|ZP_06613139.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315728|gb|AAO04863.1|AE016748_97 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637692|gb|AAW54480.1| conserved hypothetical protein TIGR00046 [Staphylococcus
           epidermidis RP62A]
 gi|251805504|gb|EES58161.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|291319231|gb|EFE59600.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 253

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 27/251 (10%)

Query: 6   HLKRLFV----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISY 60
           +L+R F+    D   C   + K   + YH++ +V+R KEG NI++    +  +  K IS 
Sbjct: 3   NLQRYFMNQSADENQCFFIENK---EDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISI 59

Query: 61  VGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVI 113
             +SI  K VE Q  +     ++      IK ++ ++MIQK+ EMG          R V+
Sbjct: 60  NDQSIEIKLVEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVV 119

Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE---FLLKNWDHNCQIVFADE 170
                     + R +     AAEQ   LT+P I   + L+    ++  +D+   ++ A E
Sbjct: 120 KLNDSKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYE 176

Query: 171 TCGSENSLEKL-HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                  L +    I        V I+ GPEGG    E      +   T + LGPRILR+
Sbjct: 177 EQAKHGELSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRA 234

Query: 227 DTAAVAAMALV 237
           +TA + A++ V
Sbjct: 235 ETAPLYALSAV 245


>gi|219848626|ref|YP_002463059.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aggregans
           DSM 9485]
 gi|219542885|gb|ACL24623.1| protein of unknown function DUF558 [Chloroflexus aggregans DSM
           9485]
          Length = 251

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 17/241 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           R FVD P+ ++       D    H    VLR+  GD +LL +GK    + + + + +  R
Sbjct: 12  RFFVD-PVWLRGDEILIDDPSLLHQWTRVLRLTAGDRVLLLDGKGMAAVVQFTAIDRR-R 69

Query: 67  FKVEYQSRSQTKQSDVQYI---FSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQ 118
            +    +R          I    + I+  R ++ +QK+VE+G   I PV     ++    
Sbjct: 70  AQGYVLTRCHAGGELAVVIDLYLALIRPERFEWALQKAVELGARRIIPVAFARSLSGDRI 129

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +TH  M   R  T  AAEQ     LP +  P      +         +  DE   +E+ L
Sbjct: 130 DTHRLMRWQRIAT-EAAEQSGRGRLPEVSAPQPFSAAVVAGGRADLALMLDEQ--AEHHL 186

Query: 179 EKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +  +   +  +AI+ GPEGG    E+       FV  +SLGPRILR++TA +AA+A++
Sbjct: 187 RDIVTSPTSLRQIAIISGPEGGIDPRERRAAIDHGFVA-VSLGPRILRAETAPLAALAML 245

Query: 238 Q 238
           Q
Sbjct: 246 Q 246


>gi|282875997|ref|ZP_06284864.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           SK135]
 gi|281295022|gb|EFA87549.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           SK135]
          Length = 250

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 20/226 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFK-VEYQSRSQTKQSDVQY 84
           + YH++ +V+R KEG NI++    +  +  K IS   +SI  K VE Q  +     ++  
Sbjct: 22  EDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQSIEIKLVEKQQINTELPQNITI 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
               IK ++ ++MIQK+ EMG          R V+          + R +     AAEQ 
Sbjct: 82  CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQS 141

Query: 139 DILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VA 191
             LT+P I   + L+    ++  +D+   ++ A E       L +    I        V 
Sbjct: 142 YRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYEEQAKHGELSQFKQTIKQFKTQDRVL 198

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E      +   T + LGPRILR++TA + A++ V
Sbjct: 199 IIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYALSAV 242


>gi|329725434|gb|EGG61917.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU144]
 gi|329735250|gb|EGG71542.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU045]
 gi|329737441|gb|EGG73695.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU028]
          Length = 245

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 20/226 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFK-VEYQSRSQTKQSDVQY 84
           + YH++ +V+R KEG NI++    +  +  K IS   +SI  K VE Q  +     ++  
Sbjct: 17  EDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQSIEIKLVEKQQINTELPQNITI 76

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
               IK ++ ++MIQK+ EMG          R V+          + R +     AAEQ 
Sbjct: 77  CSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQS 136

Query: 139 DILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPN---VA 191
             LT+P I   + L+    ++  +D+   ++ A E       L +    I        V 
Sbjct: 137 YRLTIPNIKFKSNLKEIYGMISQYDY---VLIAYEEQAKHGELSQFKQTIKQFKTQDRVL 193

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E      +   T + LGPRILR++TA + A++ V
Sbjct: 194 IIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYALSAV 237


>gi|239818235|ref|YP_002947145.1| 16S ribosomal RNA methyltransferase RsmE [Variovorax paradoxus
           S110]
 gi|239804812|gb|ACS21879.1| protein of unknown function DUF558 [Variovorax paradoxus S110]
          Length = 244

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 17/204 (8%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI---K 90
            VLRM+ GD + LF+G  GE+ + +  +G+S    V   + +  ++  V+ +   +    
Sbjct: 27  QVLRMQPGDALTLFDGSGGEYAATVERMGRS-DVSVAIGAHAPAEREAVRSVHLAVGMPA 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTY----TISAAEQCDILTLP 144
             R+D++++K+ E+G+ +I+P+ T +   + +    ++ R +     I+A EQC    +P
Sbjct: 86  NERMDWLVEKATELGVASIQPLATAHGVLRLSGERAEKKRAHWEAIAIAACEQCGRNRVP 145

Query: 145 FIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGG 199
            I+P          W   H  +         +E       A A  P   +V +L GPEGG
Sbjct: 146 RIHPVRPFSG-PSAWIGAHAGEAPLRLVLSLAEGMRRLADATASAPADRSVLVLSGPEGG 204

Query: 200 YHSEEKETLHSLPFVTPLSLGPRI 223
             S E++   +  F  P++LGPR+
Sbjct: 205 LSSAEEQKALACGF-APVTLGPRV 227


>gi|94984945|ref|YP_604309.1| hypothetical protein Dgeo_0838 [Deinococcus geothermalis DSM 11300]
 gi|94555226|gb|ABF45140.1| protein of unknown function DUF558 [Deinococcus geothermalis DSM
           11300]
          Length = 230

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 14/204 (6%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91
           HVLR++EGD + +F+G+  E  + ++ +   +++    E  S +      V    + +K 
Sbjct: 26  HVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLAVALLKG 85

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
           ++L  +++ + E+G+  ++ ++TR+    +     + R+R     A++Q      P +  
Sbjct: 86  DKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAVTPEVLA 145

Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208
           P  L  L   W+   Q+  A    GS   L   H     P V +L GPEGG    E   L
Sbjct: 146 PVPLAEL--TWE--GQLFVAQ--PGSAQRLTD-HLSWDAP-VTVLTGPEGGLSDAEIRAL 197

Query: 209 HSLPFVTPLSLGPRILRSDTAAVA 232
            S   V  ++LGPRILR++TA VA
Sbjct: 198 TSRGAVA-VTLGPRILRAETAPVA 220


>gi|257453135|ref|ZP_05618434.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R]
 gi|257467389|ref|ZP_05631700.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918519|ref|ZP_07914759.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059670|ref|ZP_07924155.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685346|gb|EFS22181.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313692394|gb|EFS29229.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 236

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 18/216 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----D 81
           +  H+L HV R++ GD +   +G D E++ +I    K I  KV  Q   + + +     D
Sbjct: 21  EDLHHLLHVFRLEIGDKVRAVDG-DYEYICEIQ---KIIENKVHLQILEKREDAFSLSVD 76

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-RTYTISAAEQCDI 140
           +      IK +++D+ IQK  E+G+ +I P + +              T      +QC  
Sbjct: 77  IDAAICLIKNDKMDFCIQKLTELGIRSIIPTVAKRCVVKLKEKKEKWNTIVKETMKQCQG 136

Query: 141 LTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPE 197
           +    I   T L+ L L+++D    ++     C  E+SL+ +  + +     V  +IGPE
Sbjct: 137 VKPTQIQEVTDLKKLPLEDYD----LILLPYECEEEHSLKYVLQNRVEKPRKVLYVIGPE 192

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GG+  EE + L S      +SLG RILR++TAA+  
Sbjct: 193 GGFEKEEIQYLAS-KRAEVVSLGKRILRAETAAIVV 227


>gi|72381940|ref|YP_291295.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. NATL2A]
 gi|72001790|gb|AAZ57592.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str.
           NATL2A]
          Length = 254

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 18/240 (7%)

Query: 8   KRLFVDFPLC---IKTQG--KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +RLF+        I + G  K + ++ HYL  V+RM+  D + + +GK   W +KI    
Sbjct: 5   RRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKI-VEQ 63

Query: 63  KSIRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           K+I+    +    Q  +++  +  I   I     +  +Q S E+G+  I+P+I++ +   
Sbjct: 64  KAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKGFENFLQMSCEIGVDIIQPLISKRSVVK 123

Query: 121 HYNMDRVRTYT---ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             N +++  Y      A EQ + L  P +    T    + +     Q+ FA      E+ 
Sbjct: 124 ECNNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--ATRIEDL 181

Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            + +  +   P     V ++IGPEGG++ +E+E   +  FV  +S+G  ILR+ TAAV+A
Sbjct: 182 PDCVTWVKETPHEVNQVWVVIGPEGGWNKDEEELAFNAGFVG-VSMGETILRTSTAAVSA 240


>gi|218282362|ref|ZP_03488644.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989]
 gi|218216648|gb|EEC90186.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989]
          Length = 239

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 14/239 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +K++++D  L I    +    Q H++  VLR    + I +     G +L  +    K I 
Sbjct: 1   MKQVYLDAVLSIHDVIELDTKQAHHIFDVLRTTPKEKIRIITKNSGVFLGHVE--NKPIL 58

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                    +  QS +    + IK ++ ++M+QK+ E+G+  I P +++ T      +  
Sbjct: 59  IIDSIVDVFEENQS-ITLCCALIKQDKFEWMLQKACELGVTKIVPFVSKNTVVKLDEKKA 117

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R     ++A +QC+  TL  + P   L+  L N+   C +V  ++   S+ S   
Sbjct: 118 EKKQSRWNEILLAATKQCNRNTLVELEPVIPLK-KLSNYKSECNLVAYEKE--SDPSKHM 174

Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            H +   P ++ + IGPEGG+   E + L+   +    SLG  ILR++TAA   ++ ++
Sbjct: 175 AHYLKENPKSITVCIGPEGGFEESEIQVLNEFGY-ENCSLGNNILRAETAACYVLSAIE 232


>gi|148242549|ref|YP_001227706.1| hypothetical protein SynRCC307_1450 [Synechococcus sp. RCC307]
 gi|147850859|emb|CAK28353.1| Conserved hypothetical protein [Synechococcus sp. RCC307]
          Length = 252

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 8/218 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           + D+ HYL  VLR++ G    + +G+ G   +++   G + +     Q   Q  Q ++  
Sbjct: 24  TSDERHYLEKVLRLRPGSPFAIVDGQGGLHQAELRSNGWAQQGACVEQQPPQ--QLELVL 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142
           +   I+ +  + +++ + E+G+  +RP+  + +  ++      R ++    A EQC+ L 
Sbjct: 82  LMGLIRRD-FEVVVRMTCELGLDQLRPLQAQRSVVESKGQRPQRWQSQLQEACEQCERLW 140

Query: 143 LPFIYPPTTLEFLLKNWDHNCQI--VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           LP ++P ++    L       ++  +      G     E L A +      +  GPEGG+
Sbjct: 141 LPQLHPVSSAIDGLSQAKSAGELRCIGVTREAGVPLLAEVLEAASPTQRWQLACGPEGGW 200

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             +E++   +  +  P+SLGP ILR+ TAA++ +A++Q
Sbjct: 201 TDDERQAAAAHGW-QPVSLGPNILRASTAAISGLAVMQ 237


>gi|310826526|ref|YP_003958883.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612]
 gi|308738260|gb|ADO35920.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612]
          Length = 245

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 14/221 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV--EYQSRSQTKQSDV 82
           G+ + ++  VLR+++ + I + +G+  ++++ +  VGK S++ ++     SR +T    V
Sbjct: 20  GEDFKHITKVLRLRDDEAIEVCDGRGTDYIACVETVGKDSLKGRILESRPSRGETDSLRV 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQ 137
                  K  +++ +IQK VE G  +I P      + +          R +     AA+Q
Sbjct: 80  TLFQGVPKGQKMESVIQKCVEAGAASIVPFTSERTVVKLGDKEEKKTRRWQRVAYEAAKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPN-VAILI 194
                +P +   TTL  +    D+   ++ A E  G E S  K  +  +   P  +A++I
Sbjct: 140 SKRGIIPHVAEVTTLSAVADTLDNYDLVLIAYE--GEEESSLKDVISCLEFDPERIAVII 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GPEGG+   E   +      + +SLG RILR++TA V  +A
Sbjct: 198 GPEGGFAPAEVAMIEEAGGYS-VSLGRRILRTETAGVVLLA 237


>gi|149927712|ref|ZP_01915964.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105]
 gi|149823538|gb|EDM82768.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105]
          Length = 258

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 110/230 (47%), Gaps = 18/230 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSD 81
           S D  HY + VLR++EG+ + ++NGK  E+ + I Y  K    I+   +   R+      
Sbjct: 27  SDDLMHYASRVLRLREGEALRVWNGKGCEYHATIHYASKKLAQIQVGEQLALRNTELNRP 86

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
           V  + +  + +++D++++K  E+G+    PV  + +      +  +          ++A+
Sbjct: 87  VHVLQALPEGDKMDWVLEKCTELGVAGFHPVQAQRSVVKLEGERANKRQAHWERVVLAAS 146

Query: 136 EQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAIAHIPN-V 190
            Q +   +  + P  TL   L++    W +   + F   T  +E +L K    A+    +
Sbjct: 147 LQSERGQMAQVEPVRTLSAALEHVALIWPNAHVLWF---TPQAELALRKWTPQANPGEPL 203

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            I +GPEGG+  EE +    L  + PL+   R+LR++T AVA  A + A+
Sbjct: 204 IICVGPEGGWSPEETDAATQLGAL-PLNFSQRVLRTETFAVACTAQLTAL 252


>gi|209523429|ref|ZP_03271984.1| protein of unknown function DUF558 [Arthrospira maxima CS-328]
 gi|209496171|gb|EDZ96471.1| protein of unknown function DUF558 [Arthrospira maxima CS-328]
          Length = 252

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +  Q HYL  VLR++ GD  ++ +G+ G WL+   + G      VE    +      V  
Sbjct: 22  TAGQQHYLGRVLRLQPGDRFIILDGRGGWWLA--IWKGGQNATVVEPIRINNELPIPVTL 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142
             S  K +  + +++ + E+G+  + P+++  T    +   + R R     AAEQ +   
Sbjct: 80  WVSMPKGSGFEEIVRCTTELGVSRLVPIMSARTVVVPSPQKLARWRRIATEAAEQSERQI 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL----------HAIAHIPNVAI 192
           LP I  P +++   +      + V     C +      L              ++ N  +
Sbjct: 140 LPEITDPLSIQQAWETLSDQGEEV-DKYICVARGDFPHLLNCLLAARTGQGKGYVYNSLL 198

Query: 193 L-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L IGPEGG+ + E E   +  F  P+SLG RILRS TA + A++LV A+
Sbjct: 199 LAIGPEGGWTTPEVEEAINRRF-QPVSLGSRILRSVTAPMVALSLVAAV 246


>gi|256820668|ref|YP_003141947.1| 16S ribosomal RNA methyltransferase RsmE [Capnocytophaga ochracea
           DSM 7271]
 gi|256582251|gb|ACU93386.1| protein of unknown function DUF558 [Capnocytophaga ochracea DSM
           7271]
          Length = 246

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 5/217 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++  VLR K GD + + NGK   + +K+ +   K     +   +    +   +  +
Sbjct: 23  EESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTLQLPRPYYLHLV 82

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P+I  +++ T   ++R     +SA +Q     LP
Sbjct: 83  VAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCYLP 142

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSE 203
            +  P       K    +    +      +E  L    A+   P  + +LIGPEG + + 
Sbjct: 143 KLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLS-RALKSFPERIIVLIGPEGDFSTN 201

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E  T     FV P+SLG   LR++TAA+ A   V  I
Sbjct: 202 EINTALQQAFV-PISLGDTRLRTETAAIVACHTVAVI 237


>gi|304437370|ref|ZP_07397329.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369626|gb|EFM23292.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 247

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 11/224 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           +G   H+LA V+R + GD I + +         ++ + + ++  +++     +T+  +V 
Sbjct: 17  TGGDAHHLARVMRAQIGDVITVVDAAGQAAEMAVTELARDAVHLRMQRVLPVETEGREVI 76

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY-TQNTHYNMDRVRTYTISAAEQ 137
            + + +K  ++D+++QK+ E+G   + P++T     RY  + T     R +     AA+Q
Sbjct: 77  LVQALLKGEKMDFVVQKAAELGAVCVCPIVTEHVVVRYDAKKTAVKAARWQKIADEAAKQ 136

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI---AHIPNVAILI 194
           C    L  + P  +L  LL++  +      A   C  +   + +  +        V +++
Sbjct: 137 CGRRMLMRVAPIVSLTELLRDPAYIDAADTATVFCYEQEERQSMRTVLRGTEARRVTLIV 196

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           G EGG+   E  T  +      +SLG RILR++TA++ A+A+ Q
Sbjct: 197 GAEGGFSPAEA-TAVTAAGGQSVSLGHRILRAETASLTALAVTQ 239


>gi|56421036|ref|YP_148354.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus kaustophilus
           HTA426]
 gi|56380878|dbj|BAD76786.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 258

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           SGD  +++A V+RMK GD I+         + +I  +    ++ ++      +++     
Sbjct: 19  SGDDAYHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHVQARIVQWKEERSELPVRI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K  + + +IQK  E+G        A R V+    +     ++R +     AAE
Sbjct: 79  YIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAKKAEKKVERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAIL- 193
           Q +   +P +  P +   LL         +FA E          L A+     P  A+L 
Sbjct: 139 QAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARHAALPALLSRLRPGGALLA 198

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             GPEGG+  EE E L    F +P SLGPRILR++TA
Sbjct: 199 VFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETA 234


>gi|295706647|ref|YP_003599722.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium DSM 319]
 gi|294804306|gb|ADF41372.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium DSM 319]
          Length = 250

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 13/223 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQY 84
           D  H+++ V+RM EG   +  N +    L +I  +    ++   +E+ S  +     V  
Sbjct: 21  DDAHHISRVMRMNEGSQFIACNEQGQAALCEIENISANEVKASIIEWISEEKELPVHVTI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           +    K ++L+ +IQK  E+G        A R V+    + +   +DR       AAEQ 
Sbjct: 81  VNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDKKSQKKVDRWNKIAKEAAEQS 140

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIP--NVAILI 194
               +P +  P + + L++        V A E    +     LHA+  A  P  +V +++
Sbjct: 141 HRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGETSHLHAVLSALKPGHSVLVVV 200

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG   +E   L    F T    GPRILR++TA + A++ +
Sbjct: 201 GPEGGLTEQEVGVLEENEF-TISGFGPRILRAETAPLYALSAI 242


>gi|240145922|ref|ZP_04744523.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82]
 gi|257201987|gb|EEV00272.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82]
          Length = 251

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 17/224 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK G+ I +       +  +I+ +  S +R  +  +  + T+  +  Y
Sbjct: 20  GSDVNHIKNVLRMKPGEKIRISGPARENYFCEIAEIEDSFVRASILEKDETGTELPNRIY 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD---------RVRTYTISA 134
           +F  + K ++++ +IQK+VE+G+  I PV  +   N    +D         R +    SA
Sbjct: 80  LFQGLPKNDKMELIIQKAVELGVYEIIPVAMK---NCVVKLDAKKAAAKTARWQGIAESA 136

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A+Q     +P +  P +  E +      + ++V  +   G   + E + A+    ++ I 
Sbjct: 137 AKQSKRSLIPKVSEPVSYKEAVAYAMKLDQKLVPYENERGMAATREAVEAVRPGESIGIF 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           IGPEGG+  EE E +     +  +SLG RILR++TA    +A++
Sbjct: 197 IGPEGGFAPEEIEAVKGE--MKLISLGSRILRTETAGFTTLAIL 238


>gi|321312028|ref|YP_004204315.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5]
 gi|320018302|gb|ADV93288.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5]
          Length = 256

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           +G+  H++ +V+RM EGD I+  +    E   ++  V K     +  +  ++ ++  ++ 
Sbjct: 22  TGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKV 81

Query: 84  YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI S + K ++L+++IQK  E+G        A R V+    +      +R       AAE
Sbjct: 82  YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAE 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVAI 192
           Q     +P +    + + LL+      + V A E    +  +    AI + +P   ++ I
Sbjct: 142 QSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLI 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG    E E L     V P  LGPRILR++TA + A++ +
Sbjct: 202 VFGPEGGLTEAEVERLTEQDGV-PCGLGPRILRTETAPLYALSAI 245


>gi|229597239|ref|YP_001763902.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
           MC0-3]
          Length = 255

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   ++  VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P +         L       
Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAP 173

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 174 ADGELRLLLSPRASSPFASLPDAPPAA---TVTLLIGPEGGLSPDEEHAARARGF-TALS 229

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 230 LGPRVLRTETAGAAVLAALAARWGGW 255


>gi|238927383|ref|ZP_04659143.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC
           43531]
 gi|238884665|gb|EEQ48303.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC
           43531]
          Length = 247

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFN--GKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           +G   H+LAHV+R + GD I + +  G+  E +   +    ++ F+++    ++T   +V
Sbjct: 17  TGGDAHHLAHVMRTQIGDVITVVDAEGQAAEMVVT-ALTRDAVHFRMQRVLPAETAGREV 75

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RY-TQNTHYNMDRVRTYTISAAE 136
             + + +K  ++D+++QK+ E+G   + P++T     RY  +       R +     AA+
Sbjct: 76  ILVQALLKGEKMDFIVQKAAELGAVCMCPIVTEHIVVRYDAKKAAAKAARWQKIADEAAK 135

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI---AHIPNVAIL 193
           QC   +L  + P  +L  LL++  +          C  +   + + A+        V ++
Sbjct: 136 QCGRRSLMTVAPIVSLAELLQDPAYIGAADTVTAFCYEQEERQSMRAVLRGTEARRVTLI 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +G EGG+ S  +    +      +SLG RILR++TA++ A+A+ Q
Sbjct: 196 VGAEGGF-SPAEAAAVTAAGGQSVSLGHRILRAETASLTALAVTQ 239


>gi|169815197|gb|ACA89780.1| protein of unknown function DUF558 [Burkholderia cenocepacia MC0-3]
          Length = 262

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   ++  VLR++ GD + LF+G  G++ +++      
Sbjct: 15  AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 67

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 68  ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P +         L       
Sbjct: 121 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAP 180

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 181 ADGELRLLLSPRASSPFASLPDAPPAA---TVTLLIGPEGGLSPDEEHAARARGF-TALS 236

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 237 LGPRVLRTETAGAAVLAALAARWGGW 262


>gi|89100454|ref|ZP_01173316.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911]
 gi|89084797|gb|EAR63936.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911]
          Length = 248

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 37/237 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +GD +H++  V+RMKEGD+I+                G+S   ++E  +  Q     VQ+
Sbjct: 17  AGDDFHHITRVMRMKEGDSIIC-----------AVRGGRSAVCRIEEITDEQVIAEVVQW 65

Query: 85  IFS----PIKT---------NRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMD 125
             +    PIK          ++L+ +IQK  E+G        A R ++    +      +
Sbjct: 66  KEASSELPIKAAIASGLPKGDKLELIIQKGTELGASVFIPFTAARSIVKWDEKKAGKKTE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENS--LEK 180
           R +     AAEQ      P +  P +++ L+   K +D    I + ++    E+S     
Sbjct: 126 RWQKIAKEAAEQSHRDLQPDVLQPVSMKELIDLGKGYDRKV-IAYEEDAKDGESSAFASL 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +    ++ ++ GPEGG   +E   L    F++   LGPRILR++TA + A+A V
Sbjct: 185 LSGMEKGQSLLMVFGPEGGLSEKEVALLKDNGFLS-CGLGPRILRTETAPLYALAAV 240


>gi|116074941|ref|ZP_01472202.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916]
 gi|116068163|gb|EAU73916.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916]
          Length = 261

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 31/242 (12%)

Query: 5   SHLKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           + L+RL +  P  + T G      GD+ HYL  VLR++ GD++ + +G+   W +++   
Sbjct: 2   AELRRLLI-APTRLPTSGSVLVLEGDERHYLRRVLRLRPGDHLAVVDGQGHSWSAQLMEG 60

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR--LDYMIQKSVEMGMGAIRPVITRY-TQ 118
           G+ +          +T  +    +   +   R  +D +++ + E+G+  I+P+ +++ T 
Sbjct: 61  GEQLDLHQPLDQPLETASAPRPRLGLAVVGVRRGMDDVMRMACELGIDCIQPLSSQWRTP 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---------------DHNC 163
                 DR  T    A EQC+ L +P +   +T+E   K+W                   
Sbjct: 121 QAEDRPDRWHTILKEAVEQCERLWMPELL--STVEA--KDWWSMPAEGSLKALATTRQPD 176

Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
            + F D     + +L+      +IP + I IGPE G+ + E++      + TPL +G  I
Sbjct: 177 SVRFDDWLACEQAALDH----GNIPELWIAIGPEAGWTATEQDDAQRNGW-TPLEMGRTI 231

Query: 224 LR 225
           LR
Sbjct: 232 LR 233


>gi|187251700|ref|YP_001876182.1| hypothetical protein Emin_1295 [Elusimicrobium minutum Pei191]
 gi|186971860|gb|ACC98845.1| Conserved hypothetical protein [Elusimicrobium minutum Pei191]
          Length = 230

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 16/212 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQ 83
           +GD+  +L  V+R  EGDNI +F+G+  ++ + I  V K I    V  +   +    ++ 
Sbjct: 16  TGDEAKHLFCVMRAAEGDNIKIFDGRGKKFNAVIKEVAKDIVVGSVISEIALRPLPYNLT 75

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQC 138
             F+P+  ++ + ++ K  ++G+ +  PVIT  T++          +R     I+A +QC
Sbjct: 76  LCFAPVDKSKTEEILDKCTQLGVSSFLPVITERTEHDILKKWENKKERWEQIIIAAVKQC 135

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           +   +P +  P   E  LK       I +  E   S +S  K    A    + I IGP G
Sbjct: 136 ETAFVPRLLAPQKFEQALKIPGKTI-IAYEKENSVSLSSAVKGEEKA----IKIFIGPAG 190

Query: 199 GYHSEEKE--TLHSLPFVTPLSLGPRILRSDT 228
           G+   E E   L     VT   LG  I+R++T
Sbjct: 191 GFSPREVEEAVLQGAVLVT---LGVNIMRAET 219


>gi|16079598|ref|NP_390422.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310469|ref|ZP_03592316.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314792|ref|ZP_03596597.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319715|ref|ZP_03601009.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323992|ref|ZP_03605286.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730989|sp|P54461|RSME_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|1303811|dbj|BAA12467.1| YqeU [Bacillus subtilis]
 gi|1890060|dbj|BAA12079.1| YqeU [Bacillus subtilis]
 gi|2634990|emb|CAB14486.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 256

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           +G++ H++ +V+RM EGD I+  +    E   ++  V K     +  +  ++ ++  ++ 
Sbjct: 22  TGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKV 81

Query: 84  YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI S + K ++L+++IQK  E+G        A R V+    +      +R       AAE
Sbjct: 82  YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAE 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVAI 192
           Q     +P +    + + LL+      + V A E    +  +    AI + +P   ++ I
Sbjct: 142 QSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLI 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG    E E L     VT   LGPRILR++TA + A++ +
Sbjct: 202 VFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPLYALSAI 245


>gi|150025667|ref|YP_001296493.1| hypothetical protein FP1617 [Flavobacterium psychrophilum JIP02/86]
 gi|149772208|emb|CAL43684.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 234

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 8/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++  VLR  EGD + + NG    + +K+     K    K+E     Q     +   
Sbjct: 21  EESKHIIKVLRKTEGDILHVTNGLGNLFSTKVILASEKKCTVKIETTETYQPTDFYIHLA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ EMG+  I P+I   ++      +R     +SA +Q     LP
Sbjct: 81  VAPTKMNDRFEWFLEKATEMGVHEITPIICDRSERKIVKNERFDKIILSAMKQSLQFFLP 140

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
            +  P +  +F+ +  D N  I   +ET    N     + I       ILIGPEG +  +
Sbjct: 141 KLNEPISFKDFINEQHDGNLCIAHCEET----NKKLLKNTIKAKEKYTILIGPEGDFSEK 196

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E +   +  ++ P+SLG   LR++TAAV A
Sbjct: 197 EIQLALANNYI-PVSLGNTRLRTETAAVVA 225


>gi|254246356|ref|ZP_04939677.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184]
 gi|124871132|gb|EAY62848.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184]
          Length = 267

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   ++  VLR++ GD + LF+G  G++ +++      
Sbjct: 20  AAVPRFFVDAALRADAPLALPADVARHV-QVLRLQPGDVLALFDGTGGQYRARL------ 72

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 73  ----VEVDKRSALVQVDT---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 125

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
            P      V+    +     +   R    ++ EQC    +P +         L       
Sbjct: 126 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAP 185

Query: 160 -DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D   +++ +        SL      A    V +LIGPEGG   +E+    +  F T LS
Sbjct: 186 ADGELRLLLSPRASSPFASLPDAPPAA---TVTLLIGPEGGLSPDEEHAARARGF-TALS 241

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++TA  A +A + A  G W
Sbjct: 242 LGPRVLRTETAGAAVLAALAARWGGW 267


>gi|311031620|ref|ZP_07709710.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. m3-13]
          Length = 253

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 17/250 (6%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKIS 59
           MKI   ++R FV+     ++    +G+  H++  V+RM E D +L    +  +  L KI+
Sbjct: 1   MKI---VQRYFVNSNQIDESSISITGEDVHHITRVMRMNEDDQLLCSCSETRQTALCKIA 57

Query: 60  YVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRP 111
            +   +     VE+          V       K ++L+ +IQK  E+G        A R 
Sbjct: 58  EITNDMVVTDIVEWIKAETEIPVRVSIANGLPKGDKLELVIQKGTELGAESFIPFNAARS 117

Query: 112 VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADE 170
           ++    +     ++R       AAEQ     +P +  P TL  LL K+ D+  +IV  +E
Sbjct: 118 IVKWDEKKGKKKVERWNKIAKEAAEQSHRSMVPVVEEPATLAQLLEKSRDYTYKIVAYEE 177

Query: 171 TCGSENSLEKLHAIAHI-PNVAIL--IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           +     S    + + ++ P  +IL   GPEGG   +E + L    FV P +LGPRILR++
Sbjct: 178 SAKEGESSAFANTLKNMKPGESILCVFGPEGGLAQKEIDKLVEHGFV-PCALGPRILRTE 236

Query: 228 TAAVAAMALV 237
           TA +  +A +
Sbjct: 237 TAPLYVLAAI 246


>gi|291529135|emb|CBK94721.1| RNA methyltransferase, RsmE family [Eubacterium rectale M104/1]
          Length = 246

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ I + +     +   IS +    +   ++    + T+  +  
Sbjct: 19  TGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEVIAAIDSADETGTELDNHI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAE 136
            ++  + K ++++ +IQK+VE+G+  I PV      +    +     + R +    SAA+
Sbjct: 79  VLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDDKKAAKKLQRWQAIAESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +  P T +  LK   + +  +V  +   G + + E +  +     + +++G
Sbjct: 139 QSKRTVIPTVNQPVTYKEALKIASELDITLVPYENERGMDATREIMGQLKAGQTIGVVVG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+  EE   +     +  +SLG RILR++TA +AA+A++
Sbjct: 199 PEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240


>gi|115455113|ref|NP_001051157.1| Os03g0729700 [Oryza sativa Japonica Group]
 gi|113549628|dbj|BAF13071.1| Os03g0729700 [Oryza sativa Japonica Group]
          Length = 330

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 20/221 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDG---EWLSKISYVGKSIRFKVEYQSRSQTK-QSD 81
           GD++ ++  VLR+   D + LF+G  G     + K+   G  ++   + +  +    Q  
Sbjct: 102 GDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLEDARLIAPDGIQWH 161

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDI 140
           V   F  +K  R D++++K  E+G  ++ P++T        N +DR++   ++A +QC  
Sbjct: 162 VYAAFGTLKGGRADWLVEKCTELGACSVTPLLTERCHTIAENRVDRLQRLVLAAVKQCQR 221

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA------ILI 194
           +    + PP  +  L        Q V +        S E    ++ +P         +++
Sbjct: 222 IHGMLLNPPIQIADL--------QPVVSQSKLAFVASAESPPLLSTLPKSCNEESGLLIV 273

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GPEG +  EE   L +   V P+ LGP  LR +TA ++ ++
Sbjct: 274 GPEGDFTEEEVNVLKASGAV-PVGLGPCRLRVETATISLLS 313


>gi|149280553|ref|ZP_01886669.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39]
 gi|149228668|gb|EDM34071.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39]
          Length = 234

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 10/204 (4%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRS-QTKQSDVQYIFSPIKT- 91
           VLR+  GD + L +G+ G + ++I   GK +++ +V +  +  Q +   +    +P K  
Sbjct: 27  VLRLGVGDVVNLIDGRGGFYEAEIIEAGKRNVKLRVTHARQEFQKRNHHLHIAIAPTKNI 86

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
           +RL++ ++K+ E+G+  I P++   ++      DR+     SA +Q      P + P T+
Sbjct: 87  DRLEWFLEKATEIGIDEITPLLCERSERKIVKEDRLFKVITSAVKQSLQAYHPVLNPLTS 146

Query: 152 L-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS 210
           + +FL +  D    I    +    E   E    I       ILIGPEG +   EKE  H+
Sbjct: 147 MSDFLRQENDTFKMIAHCIDGVPREYISE---VIQPQGRYTILIGPEGDF--SEKEIQHA 201

Query: 211 L-PFVTPLSLGPRILRSDTAAVAA 233
           L     PL+LG   LR++TAA+AA
Sbjct: 202 LQSGYKPLTLGNTRLRTETAALAA 225


>gi|315223790|ref|ZP_07865639.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314946236|gb|EFS98236.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 246

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 5/217 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++  VLR K GD + + NGK   + +K+ +   K     +   +    +   +  +
Sbjct: 23  EESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTPQLPRPYYLHLV 82

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P+I  +++ T   ++R     +SA +Q     LP
Sbjct: 83  VAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCYLP 142

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSE 203
            +  P       K    +    +      +E  L    A+   P  + +LIGPEG + + 
Sbjct: 143 KLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRL-LFRALKPFPERITVLIGPEGDFSTN 201

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E  T     F+ P+SLG   LR++TAA+ A   V  I
Sbjct: 202 EINTALQQAFM-PISLGDTRLRTETAAIVACHTVAVI 237


>gi|152977886|ref|YP_001343515.1| hypothetical protein Asuc_0200 [Actinobacillus succinogenes 130Z]
 gi|150839609|gb|ABR73580.1| protein of unknown function DUF558 [Actinobacillus succinogenes
           130Z]
          Length = 243

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 17/231 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR-SQTKQSD 81
           + S +  +++  VLRM+ G+ + LF+G +  + + IS   K     V  + R S  ++S 
Sbjct: 19  RLSEEAANHVGRVLRMQAGEALELFDGSNHIYPAVISRADKKT-VTVNIRERISDDRESP 77

Query: 82  VQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTI 132
           +      +  +  R+++ IQKSVE+G+  I P+ +          DR+       +   +
Sbjct: 78  LAIHLGQVISRGERMEFTIQKSVELGVKVITPLWSERC-GVKLEGDRLAKKIRQWQKIAV 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           SA EQC    +P I P   L+      D   ++        S  +L  + A      + +
Sbjct: 137 SACEQCGRNVIPQIRPMMKLQDWCAENDGALKLNLHPRAQYSIKTLPTIPA----EGIRL 192

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           LIG EGG   +E        F T + LG RILR++TAA+ A+  +Q   GD
Sbjct: 193 LIGSEGGLSPQEIALTEQQGF-TEILLGKRILRTETAALTAITALQICFGD 242


>gi|313901575|ref|ZP_07835017.1| protein of unknown function DUF558 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468164|gb|EFR63636.1| protein of unknown function DUF558 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 252

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 15/247 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           +FVD  L        + D  H+L  VLR + GD ++        WL +++  G   + + 
Sbjct: 6   VFVDRELAPGAAAPLAADDAHHLLRVLRRRPGDPVVAVTPAGRRWLGRLAP-GSPPQLEA 64

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYN 123
             +  S      V       K  +++ +I+   E+G+    PV+   +            
Sbjct: 65  REELPSSEPPVAVTLGQGLPKGPKMEEVIRHGTEVGVARFVPVLAARSVSRPGEAGAAQR 124

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEK 180
           + R +     AA Q     +P + PP +L+ LL     WD        +E  G    LE 
Sbjct: 125 VQRWQRIAREAARQSQRSAVPQVEPPCSLDGLLSRGEAWDLILMPWEEEEARGLREELEA 184

Query: 181 LHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             A    P     V IL+GPEGG+ + E E          ++LGPRILR++TA V    L
Sbjct: 185 AAAAWGRPAAGRRVLILVGPEGGWDAGEVEAARRA-GARVVTLGPRILRTETAGVLVAGL 243

Query: 237 VQAICGD 243
           V  + GD
Sbjct: 244 VLHVLGD 250


>gi|210623864|ref|ZP_03294099.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275]
 gi|210153290|gb|EEA84296.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275]
          Length = 256

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 12/228 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
            G+   ++  VLR +EG+ + + +G+D E++ +I  + K          R   ++S ++ 
Sbjct: 27  EGEDVKHITKVLRYREGEKLEICDGEDNEYVGEIKSMSKEEVCLDIIDKRDIKRESKLRV 86

Query: 84  --YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             Y   P K  +++Y++QK  E+G   I  V T+ +      +     ++R       AA
Sbjct: 87  RVYQGMP-KGPKMEYILQKLTEVGTDEIILVDTKRSVAKVDGKKEDKKLERWERIIYEAA 145

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           +Q     +P +    + +  L++   N   +   E   +   ++++  +  I ++ I IG
Sbjct: 146 KQSKRGKIPTLKGVLSFKEALEDMKRNDYNICPYEDERNIPLVKEIRGL-DIESIGIFIG 204

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG   EE + L        ++LGPRILR++TA+  A ALVQ   GD
Sbjct: 205 PEGGIADEEIDALKE-NGAKVVTLGPRILRTETASTVASALVQYELGD 251


>gi|294054743|ref|YP_003548401.1| protein of unknown function DUF558 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614076|gb|ADE54231.1| protein of unknown function DUF558 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 249

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 9/218 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIF 86
           + H+L  V R K G+ + L +G+   +   +S    K+ +  VE     +  + ++  I 
Sbjct: 25  ESHHLVRVFRAKAGETVELLDGQGRRYQGVLSLAHAKAAQVAVESVELIERPKPELTLIQ 84

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDI 140
           +  K   +D +++ + E+G   I+PV T   +           +++ R   I A +QC +
Sbjct: 85  ALPKGKAMDLILRMATEIGATRIQPVFTDQGEVQIKGERLTSKVEKWRVGMIEACKQCGL 144

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQI-VFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
             LP +  P  L+ LL +        V A    GS      L  +     + + +GPEG 
Sbjct: 145 AWLPDLAEPIALKTLLASEAATGTTRVVASLEAGSRPLAAVLDELEQPKRIEVAVGPEGD 204

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + + E   L    F  P+ LG  +LR++TAA   +++V
Sbjct: 205 FSAAEYALLSECAF-KPVRLGANVLRAETAAAYLLSVV 241


>gi|288555682|ref|YP_003427617.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4]
 gi|288546842|gb|ADC50725.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4]
          Length = 250

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DV 82
           +GD   ++A V+RM+EG+ I++ N      L+K+  + +S I+ +V  +   +T+    V
Sbjct: 19  TGDDVKHIARVMRMQEGEEIIVSNNAGRTVLAKLKKLSESDIQAEVLEELDPKTELPIKV 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ + QK  E+G+   +P      ++    +     ++R+      AAE
Sbjct: 79  TVAQGLPKGDKLELITQKGTELGVSCFQPFQASRSIVKWDMKKAKKKVERLEKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAI 192
           Q     +P I    +   LL+  +     + A E          LH + +      +V I
Sbjct: 139 QSYREIIPTIKEAASFTQLLETIESYTHTIVAYEESAKTGEASNLHNVLNQVKSGDSVLI 198

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +IGPEGG   EE   L     V    LGPRI+R++TA +  MA +
Sbjct: 199 VIGPEGGLTEEEVSALEGKGAVL-CGLGPRIIRTETAPLYVMAAI 242


>gi|323342116|ref|ZP_08082349.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464541|gb|EFY09734.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 233

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 23/226 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI---SYVGKSIRFKVEYQSRSQTKQSD 81
           S DQ H    VLRM+EGD+I L + +    ++     +    +++  +E+      K+  
Sbjct: 15  SADQLHQCRKVLRMQEGDSIRLVDHRGNGVIASFTDDTLTHLTVKEPIEWNE----KKFR 70

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAA 135
           ++ + S I++ RL++MIQK+ E G+  I        V+  + + +   M+R+      A+
Sbjct: 71  LRIVASLIRSERLEWMIQKACECGVDEIILYQSQHGVVRDFGKRSDRKMERLNLIAKEAS 130

Query: 136 EQC-DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-IPNVAIL 193
           EQ      +P     T  +      D N   ++AD   G E  L  +H +     ++ +L
Sbjct: 131 EQSYRQYEVPVKGIATLDDLPQYQSDLN---LYAD--IGDEAHL--IHTVREDTKSITVL 183

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +GPEGG+ ++E+    ++ +   +SLG  +LR++TA++    +V A
Sbjct: 184 VGPEGGFSNDERSKFEAMGY-RQVSLGDNVLRAETASIYICNIVSA 228


>gi|259046670|ref|ZP_05737071.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259036835|gb|EEW38090.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 249

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-------YVGKSIRFKVEYQSRSQT 77
           S +Q H L  V+RMK  +   + +      + ++         V K++  KVE       
Sbjct: 20  SKEQIHQLKKVMRMKVEEQFEVVDENSTLAIVELVCLEPFEVRVIKTLNQKVELP----- 74

Query: 78  KQSDVQYIFSPI-----KTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN-THYNMDR 126
                  +F+ I     K ++LD+++QK+ E+G+  I P+     + ++ ++      +R
Sbjct: 75  -------VFTAIAVGLSKGDKLDWIVQKATELGVNEIIPIEMSRNVVKWNKDKASKKTER 127

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLH 182
           ++     A+EQ   L LPF+    T++ L++      Q + A E    E      ++ L 
Sbjct: 128 LQKIAEEASEQSHRLKLPFVSEVMTIDSLIEYTKTYHQKLIAYEEAAKEGERVQLVKSLQ 187

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           A+     +  + GPEGG   +E   L    F T  SLGPRILR++TA + A++ +   C
Sbjct: 188 ALKEGEKIVFVFGPEGGIDEKEVAKLQMNEFHT-CSLGPRILRAETAPLYALSALSYQC 245


>gi|229597240|ref|YP_001807272.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria
           MC40-6]
          Length = 255

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           A VLR++ GD + LF+G  G++ +++  + K         + +Q +  D      P +  
Sbjct: 35  AQVLRLQPGDTLALFDGSGGQYRARLVEIDK-------RNALAQIEAFDPAEAEPPYRVT 87

Query: 92  --------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137
                   +++D++I+K+VE+G+ A+ P      V+    +     +   R    ++ EQ
Sbjct: 88  LAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLSGERADKRVAHWRGVVRASCEQ 147

Query: 138 CDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           C    +P + P       L        D   +++ +        SL      A    V +
Sbjct: 148 CGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRASVPFASLPDAPPAAE---VTL 204

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           LIGPEGG   +E+    +  F T LSLGPR+LR++TA  A +A + A  G W
Sbjct: 205 LIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 255


>gi|319651611|ref|ZP_08005738.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2]
 gi|317396678|gb|EFV77389.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2]
          Length = 249

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 19/227 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-----YVGKSIRFKVEYQSRSQTKQS 80
           G+  H++  V+RMKEGD I+  +      L  I+     +V   +   V++   S    +
Sbjct: 19  GEDRHHIVKVMRMKEGDQIICVDQSQNSALCAIAEITDEHVAAEV---VQWIEGSSELPA 75

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           ++  +    K ++L+++IQK  E+G        + R V+    + +    +R +     A
Sbjct: 76  NITIVSGLPKGDKLEWIIQKGTELGAHRFIPFTSARSVVKWDAKKSVKKAERWQKIAKEA 135

Query: 135 AEQCDILTLPFIYPP-TTLEFLLKNWDHNCQIV-FADETCGSENSL--EKLHAIAHIPNV 190
           AEQ     +P ++ P      L  + D++ +++ F +E    E+S+  + L ++    ++
Sbjct: 136 AEQSHRTMVPEVFAPLDLKSLLKLSGDYSYKLIAFEEEAKQGEDSVLYKTLTSMNKGQSL 195

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++ GPEGG    E   L    FV    LGPRILR++TA +  ++ V
Sbjct: 196 MVVFGPEGGLSDNEVSLLQEAGFVA-CGLGPRILRTETAPLYLLSAV 241


>gi|315635117|ref|ZP_07890395.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393]
 gi|315476079|gb|EFU66833.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393]
          Length = 211

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 21/218 (9%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPI--KTNRL 94
           M+ GD + LF+G +  + + I+ + K     V+  SR    ++S +      +  +  R+
Sbjct: 1   MQPGDQLELFDGSNHIYQAVINAITKK-SVDVDILSRQLDDRESPLAIHLGQVISRGERM 59

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTLPF 145
           ++ IQKSVE+G+  I P+   +++     +D  R            I+A EQC   T+P 
Sbjct: 60  EFTIQKSVELGVNVITPL---WSERCGVKLDGERMEKKIQQWQKIAIAACEQCGRNTIPE 116

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           I P   L+      D   ++        +  S+  L AI+    V +LIG EGG   +E 
Sbjct: 117 IRPLMKLQQWCAEPDDALKLNLHPR---ASYSIRTLPAISK-AGVRLLIGSEGGLSPQEI 172

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                  FV  L LG R+LR++TAA+AA+  +Q   GD
Sbjct: 173 AQTEEHGFVEVL-LGKRVLRTETAAMAAITALQVCFGD 209


>gi|171992137|gb|ACB63056.1| protein of unknown function DUF558 [Burkholderia ambifaria MC40-6]
          Length = 262

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           A VLR++ GD + LF+G  G++ +++  + K         + +Q +  D      P +  
Sbjct: 42  AQVLRLQPGDTLALFDGSGGQYRARLVEIDK-------RNALAQIEAFDPAEAEPPYRVT 94

Query: 92  --------NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137
                   +++D++I+K+VE+G+ A+ P      V+    +     +   R    ++ EQ
Sbjct: 95  LAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLSGERADKRVAHWRGVVRASCEQ 154

Query: 138 CDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           C    +P + P       L        D   +++ +        SL      A    V +
Sbjct: 155 CGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRASVPFASLPDAPPAAE---VTL 211

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           LIGPEGG   +E+    +  F T LSLGPR+LR++TA  A +A + A  G W
Sbjct: 212 LIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 262


>gi|323154655|gb|EFZ40854.1| RNA methyltransferase family protein [Escherichia coli EPECa14]
 gi|323173840|gb|EFZ59469.1| RNA methyltransferase family protein [Escherichia coli LT-68]
          Length = 182

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143
           +  ++++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +
Sbjct: 27  RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 86

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I P   LE      D   ++        S N+L        +  V +LIGPEGG  ++
Sbjct: 87  PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 141

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 142 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 180


>gi|312972813|ref|ZP_07786986.1| RNA methyltransferase family protein [Escherichia coli 1827-70]
 gi|331659081|ref|ZP_08360023.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206]
 gi|310332755|gb|EFP99968.1| RNA methyltransferase family protein [Escherichia coli 1827-70]
 gi|331053663|gb|EGI25692.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206]
          Length = 182

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143
           +  ++++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +
Sbjct: 27  RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 86

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I P   LE      D   ++        S N+L        +  V +LIGPEGG  ++
Sbjct: 87  PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 141

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 142 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 180


>gi|225010758|ref|ZP_03701227.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-3C]
 gi|225005129|gb|EEG43082.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-3C]
          Length = 237

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 15/222 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
           S ++  +   VLR K GD I L NGK      +IS   GK+++  +        K   + 
Sbjct: 19  SQEESKHATKVLRKKTGDLIHLTNGKGLMAQGEISDTAGKTVQVSLIEIHLQTPKPYSLD 78

Query: 84  YIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K N R ++ ++K+ E+G+ +I P+I   ++      +R     +SA +Q     
Sbjct: 79  LYVAPTKMNDRYEWFLEKATEIGLSSITPIICDQSERKVIKAERYEKVLLSAMKQSLQAY 138

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVF----ADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           LP ++P  +L+  L + D + + +F    AD+   + NSL+  +       ++I IGPEG
Sbjct: 139 LPLLHPAISLKKCL-DQDISGEKLFAHCEADKMKTALNSLDLKN-----KKLSIFIGPEG 192

Query: 199 GYH-SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +  SE K+ +       P+S G   LR++TAA+ A A V A
Sbjct: 193 DFSLSEIKKAIEK--GCKPVSFGNTRLRTETAALYACASVAA 232


>gi|149372812|ref|ZP_01891833.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49]
 gi|149354509|gb|EDM43074.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49]
          Length = 236

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 6/210 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           D+  ++  VLR KEGD + + NG+   + ++I S   KS    V   S  Q     +   
Sbjct: 21  DESRHIHKVLRKKEGDQLHITNGEGYLFTTEILSSNPKSCIATVTETSLEQPLPYQLHMA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P+I  +++      +R     +SA +Q     LP
Sbjct: 81  VAPTKLNDRFEWFLEKATEIGITEITPIICDHSERKVIKKERYEKIIVSAMKQSLSCYLP 140

Query: 145 FIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
            +    T    +K + D N + +   E   ++ +L+  + I    +  +LIGPEG +  +
Sbjct: 141 KLNDAITFTAFMKLSHDENFKSIAHCENEPTKKALK--NCIKPNFDSLLLIGPEGDFSKK 198

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E +      F T +SLG R LR++TAA+ A
Sbjct: 199 EIKQAKDKDF-TEVSLGDRRLRTETAAIVA 227


>gi|283769587|ref|ZP_06342483.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219]
 gi|283103855|gb|EFC05241.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219]
          Length = 235

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 31/226 (13%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGK---------DGEWLSKISYVGKSIRFKVEYQSRSQT 77
           +Q H+  HVL +      L+++GK         DG++     +V K   F  E +     
Sbjct: 21  EQEHHAHHVLHLDHEVLRLVYDGKAFFAIATVIDGQFQC---FVEKEDLFVNELEQ---- 73

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131
              ++    + I+  + ++++QK+ E+G+  I P  +  T      +       R     
Sbjct: 74  ---EITLCMALIRKEKFEWVLQKATELGVKKIVPFTSSRTIVKVQKEKEMKMKKRYGQIV 130

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           + A++QC    +P +     L+  LKN+     +V A+ET   E++   L       N  
Sbjct: 131 LEASQQCKRNYIPEVLEVVHLD-DLKNYQSEDNVV-ANETKHQEHTFFDLKTK---KNTT 185

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+IGPEGG+ SEE   L  + F   +SLG RILR++TAA+ A+++V
Sbjct: 186 IVIGPEGGFSSEEIVKLEKMGF-RSISLGNRILRAETAAIFAVSVV 230


>gi|332753790|gb|EGJ84169.1| RNA methyltransferase family protein [Shigella flexneri K-671]
 gi|332754361|gb|EGJ84727.1| RNA methyltransferase family protein [Shigella flexneri 2747-71]
          Length = 178

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143
           +  ++++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +
Sbjct: 23  RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 82

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I P   LE      D   ++        S N+L        +  V +LIGPEGG  ++
Sbjct: 83  PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 137

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 138 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 176


>gi|86134044|ref|ZP_01052626.1| protein of unknown function (DUF558) [Polaribacter sp. MED152]
 gi|85820907|gb|EAQ42054.1| protein of unknown function (DUF558) [Polaribacter sp. MED152]
          Length = 235

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 18/221 (8%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD-----V 82
           +  ++  VLR KEGD + + NGK   + ++I++       K   Q +S T++       +
Sbjct: 22  ESRHIVKVLRKKEGDILKITNGKSYLFDAEITFASDK---KCIVQIKSATEKLKPWPYYL 78

Query: 83  QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K N R ++ ++K+ E+G+  I P+I   ++     ++R      SA +Q    
Sbjct: 79  HIAIAPTKNNDRTEWFLEKATEIGIDEITPIICSNSERRVVKLERFEKIIQSAMKQSLKF 138

Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           TLP +       EF+ ++      I   ++    +NSL KL A  +   + ILIGPEG +
Sbjct: 139 TLPKLNKAIKFNEFIQQDIPGLKCIAHCEDQ--EKNSL-KLVA-KNTDKITILIGPEGDF 194

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA---MALVQ 238
             +E +   +  F TP+SLG   LR++TAA+ A   ++LVQ
Sbjct: 195 SVDEIKKALNANF-TPISLGESRLRTETAALVAVNTISLVQ 234


>gi|291484991|dbj|BAI86066.1| hypothetical protein BSNT_03788 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 256

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 15/226 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR--FKVEYQSRSQTKQSDV 82
           +G+  H++ +V+RM EGD I+  +    E   ++  V K       +E+ ++++     V
Sbjct: 22  TGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNKNRELPIKV 81

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAA 135
            YI S + K ++L+++IQK  E+G        A R V+    +      +R       AA
Sbjct: 82  -YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAA 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVA 191
           EQ     +P +    + + LL+      + V A E    +  +    AI + +P   ++ 
Sbjct: 141 EQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLL 200

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E E L     VT   LGPRILR++TA + A++ +
Sbjct: 201 IVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPLYALSAI 245


>gi|311069145|ref|YP_003974068.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942]
 gi|310869662|gb|ADP33137.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942]
          Length = 256

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 18/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++        G A   +G+  H++ +V+RM  GD I+  +    E   ++  V K
Sbjct: 1   MQRYFIELTKQQMEAGPAFMITGEDVHHITNVMRMSAGDEIICCSLDGHEAKCELQSVSK 60

Query: 64  S--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITR 115
                   E+   ++     V       K ++L+++IQK  E+G        A R V+  
Sbjct: 61  EKVACLVSEWTGANRELPIKVHIASGLPKGDKLEWIIQKGTELGSSMFLPFQAARSVVKL 120

Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETC 172
             +      +R       AAEQ     +P + P  T + LL   +++D  C + + + + 
Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEIPDVAPVHTFQQLLSKVQDFD-KCVVAYEESSK 179

Query: 173 GSENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             E S  +  L ++    ++ I+ GPEGG    E E L     V P  LGPRILR++TA 
Sbjct: 180 QGETSALVSVLSSLPDQSSLLIIFGPEGGLTESEVEQLKDKGAV-PCGLGPRILRTETAP 238

Query: 231 VAAMALV 237
           + A+  V
Sbjct: 239 LYALGAV 245


>gi|222833711|gb|EEE72188.1| predicted protein [Populus trichocarpa]
          Length = 158

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 94  LDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D++I+K+VE+G+ AI+P      V+    +         +    +A EQC    LP + 
Sbjct: 1   MDWLIEKAVELGVSAIQPLQAARSVVRLSGERATKRQAHWQALIEAACEQCGRNRLPALA 60

Query: 148 PPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEK 205
           P   LE  L +      ++  +     S   L +    A     V +LIGPEGG   EE+
Sbjct: 61  PVANLESWLTSVPATAARLALSPRASASLPELAQAEREAWRAGGVTLLIGPEGGLSPEEE 120

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +      F+  +SLGPRILR++TA +  +A + AI G
Sbjct: 121 DRARRAGFIG-VSLGPRILRTETAGLTCLATLNAILG 156


>gi|240047429|ref|YP_002960817.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma conjunctivae
           HRC/581]
 gi|239985001|emb|CAT04994.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           conjunctivae]
          Length = 226

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD--------RVRTYTISAAEQCDI 140
           +KT   ++ IQK+ E+G+  I P    Y+QN    +         R +     AA+Q   
Sbjct: 76  LKTKAFEFAIQKATELGVNTIIPF---YSQNVEQKLGNDIDKKLVRWQEIITHAAQQSFR 132

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P I  P  ++ L++N+ H      A E   +   +  L       N   L+GPEGG+
Sbjct: 133 NVIPVIEKPIKIKTLIENYQHMKNKFIAHEKENNNLMINSLFE----NNTIFLVGPEGGF 188

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             EE E   +  F   +SLG RILR++TAA+  ++ ++
Sbjct: 189 TEEEVEIAENFGF-QAISLGKRILRAETAAIFLLSRIK 225


>gi|333029175|ref|ZP_08457236.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           coprosuis DSM 18011]
 gi|332739772|gb|EGJ70254.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           coprosuis DSM 18011]
          Length = 231

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 10/219 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
            D+  + + VLR+ EGD+I L +GK   + ++I+    K   F +         +  +  
Sbjct: 17  SDEAKHCSRVLRLTEGDHITLTDGKGNFYEAEITLTTPKKCLFNILETHTPTPPKVYIHL 76

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
              P K  +R +++ +K+ E+G      +  ++++      DRV    +SA +Q    TL
Sbjct: 77  AMGPTKNMDRNEWVAEKATEIGFNEFTFLNCQFSERKIIKTDRVEKILVSAMKQSKRATL 136

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGGYH 201
           P +   T  +  +     N Q   A   C  EN   L++L+ I    N  ILIGPEG + 
Sbjct: 137 PKLNEMTPFKTFI-TQPFNGQKFIAH--CYKENQELLKELYTIGE--NALILIGPEGDFS 191

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            EE +      F  P+SLG   LR++TAA+ A + +  +
Sbjct: 192 PEEIQLALDNGF-QPISLGDSRLRTETAAIFACSTINIL 229


>gi|260589081|ref|ZP_05854994.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583]
 gi|260540501|gb|EEX21070.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583]
          Length = 246

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 9/238 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R FV+       Q   SG   +++ +VLRMK  + IL+ +G+D E+   I  +G+     
Sbjct: 3   RFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEILA 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            + Y   +  + S   Y+F  + K+++++ +IQK+VE+G+  + PV ++        +  
Sbjct: 63  HIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVASKRAVVKLDKKKE 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLE 179
              + R +  + SAA+Q   + +P I    + +  +        ++F  E   G + + E
Sbjct: 123 EKKITRWQAISESAAKQSKRMYVPEITNVMSFQQAVDYAGKLDIVLFPYELADGMKKTKE 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +  I    +V I IGPEGG+   E            ++LG RILR++TA +  +A++
Sbjct: 183 IIGKIKPGQSVGIFIGPEGGFEESEVALAKEKADAQVITLGKRILRTETAGLTVLAIL 240


>gi|312793761|ref|YP_004026684.1| hypothetical protein Calkr_1578 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876840|ref|ZP_07736817.1| protein of unknown function DUF558 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796355|gb|EFR12707.1| protein of unknown function DUF558 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180901|gb|ADQ41071.1| protein of unknown function DUF558 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 243

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 118/225 (52%), Gaps = 12/225 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  +++  VLR +EGD I L +G + ++ S+I  + K+ R K+  ++++   +  ++ IF
Sbjct: 22  EDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKN-RIKLLIENKTLNDRESIKNIF 79

Query: 87  ---SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQC 138
                IK  ++D+++QK+ E+G+  I PV+++      ++     ++R       A +QC
Sbjct: 80  LFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISEKQEKKVERWLKIAQEAQKQC 139

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P I  P  +  + + +     I+        E    K +  +   N+ ILIGPEG
Sbjct: 140 LRPVPPLIEMPIRISEIKEKYLDKLDILLV--PYEKEFGTAKWNLSSDYNNIGILIGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+  EE E L +   V  +SLG RILRS+TA++AA++++    G+
Sbjct: 198 GFEEEEIEDLKTFKNVQVISLGKRILRSETASIAALSILMHELGE 242


>gi|146328991|ref|YP_001209347.1| hypothetical protein DNO_0433 [Dichelobacter nodosus VCS1703A]
 gi|146232461|gb|ABQ13439.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 240

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 24/226 (10%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           +H+   VLR++E D + +  G    +  +I+ + +       Y     + +   + I  P
Sbjct: 25  HHHALKVLRLRENDAVDVICGDGYFYHGEITCIDRKQTLVRVYSRSEHSTRPKTEVILLP 84

Query: 89  --IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI---------SAAEQ 137
             +K   +D+++QKSVE+G   +R VI   T+ +   ++  R  +          ++A Q
Sbjct: 85  ALLKGEPMDWVLQKSVELG---VRRVIPMNTERSERRIEGDRLTSKYEHWQGILQASALQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGP 196
           C     P +  P      LK          ADE        E   AI  +P+ +A+++GP
Sbjct: 142 CGRAEWPLLSLPMNFIDALKT--------IADEKWILSPHDETTPAIKEMPSSIALMVGP 193

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           EGG+  +E ++   + + T    G RILR+DTA+V A+   Q + G
Sbjct: 194 EGGFSEDEVQSAVHMGWKTH-CFGSRILRADTASVVAVVKAQLLLG 238


>gi|88802426|ref|ZP_01117953.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P]
 gi|88781284|gb|EAR12462.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P]
          Length = 235

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 9/217 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYI 85
           +  ++  VLR   GD + + NGK   +  +I +    K     ++ + + +     +   
Sbjct: 22  ESKHIVRVLRKTTGDILKITNGKGYLFDVEICFANDKKCTAKIIKAEEKPKPWNYSLHIA 81

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R+++ ++K+ E+G+  I P+I   ++  +  +DR      +A +Q    TLP
Sbjct: 82  IAPTKNNDRIEWFLEKATEIGIDEITPIICSNSERRYVKIDRFEKIIQAAMKQSLKCTLP 141

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
            I  P    +F+ +++D    I   ++    +N ++ +   +    + ILIGPEG +  +
Sbjct: 142 KINEPIKFNDFIKQDFDGTICIAHCEDQ--EKNFIKSVVQTSE--KITILIGPEGDFSLD 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E        F  P+SLG   LR++TA + A+ +V  I
Sbjct: 198 EIAKALDKKF-KPISLGKSRLRTETAGIVAVNIVSFI 233


>gi|257125127|ref|YP_003163241.1| hypothetical protein Lebu_0332 [Leptotrichia buccalis C-1013-b]
 gi|257049066|gb|ACV38250.1| protein of unknown function DUF558 [Leptotrichia buccalis C-1013-b]
          Length = 237

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 10/212 (4%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDVQYIFS 87
           +++ +V R+  GD + + +G + E+ +KI  + K  +  K+ E    S +   ++     
Sbjct: 27  NHIQNVYRLNIGDELRIIDG-EYEYFTKIIEISKKEVAVKILEKNEDSYSLNINIDVAMG 85

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K ++++  IQK  E+G+ +I P+ T R     +   ++  T      +QC  +    I
Sbjct: 86  ILKNDKMNLAIQKLTEIGVKSIIPLKTERVVVRINEKKEKWDTVARETLKQCRGVKFTEI 145

Query: 147 YPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
            P   L E   K +D   +I+FA E      SL ++       N+  +IGPEGG   EE 
Sbjct: 146 LPVKKLAEIDYKKYD---KIIFAYENSNESKSLSEIIKQKD-KNILYIIGPEGGIAQEEV 201

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + L +   +  +SLG RILR++TAA+    ++
Sbjct: 202 DFLKNNKAI-EISLGKRILRAETAAIVVCGII 232


>gi|170701111|ref|ZP_02892086.1| protein of unknown function DUF558 [Burkholderia ambifaria
           IOP40-10]
 gi|170133972|gb|EDT02325.1| protein of unknown function DUF558 [Burkholderia ambifaria
           IOP40-10]
          Length = 262

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 32/260 (12%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 15  AAVPRFFVEAALRADATLTLPADVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDK- 72

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------NRLDYMIQKSVEMGMGAIRPVITR 115
                   + +Q +  D      P +          +++D++I+K+VE+G+ A+ P+ T 
Sbjct: 73  ------RNALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTA 126

Query: 116 YT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQ 164
                   +     +   R    ++ EQC    +P + P       L        D   +
Sbjct: 127 RGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAMPADGELR 186

Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
           ++ +        SL      A    V +LIGPEGG   +E+    +  F T LSLGPR+L
Sbjct: 187 LLLSPRASIPFASLPDAPPAAA---VTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVL 242

Query: 225 RSDTAAVAAMALVQAICGDW 244
           R++TA  A +A + A  G W
Sbjct: 243 RTETAGAAVLAALAARWGGW 262


>gi|56963427|ref|YP_175158.1| hypothetical protein ABC1662 [Bacillus clausii KSM-K16]
 gi|56909670|dbj|BAD64197.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 248

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 110/224 (49%), Gaps = 15/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
           +GD   ++  V+RM+ GD ++  N      L ++S +   S++  V  +  ++T+     
Sbjct: 19  TGDDAAHITKVMRMQAGDEVICVNEDGKAVLVQLSQFDPSSVKGTVLNEMDNETELPIRV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
            +   + K ++L+ ++QK  E+G        A R ++    +      +R++     AAE
Sbjct: 79  TVAQGLPKGDKLETIVQKGTELGAYAFAPFSASRSIVKWDEKKGAKKTERLQKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---TCGSENSLEKLHAIAHIPNVAIL 193
           Q   L +P +  P  L+ + +   H    +  DE     G + +L++  A+   P +++L
Sbjct: 139 QAHRLFVPNVAKPVPLKVVAEALTHYDVCIVCDEEEAKQGEKANLKRAFAMLK-PGLSLL 197

Query: 194 I--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +  GPEGG   EE   L +   V+  S+GPRI+R++TAA+  +A
Sbjct: 198 VIVGPEGGLTREEVALLSAKGAVS-CSIGPRIVRTETAAMYVLA 240


>gi|323702403|ref|ZP_08114068.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532709|gb|EGB22583.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 246

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 21/245 (8%)

Query: 7   LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           + R FVD P  IK      +G    +++ VLRM  GD + + +G+   + ++I+ + K  
Sbjct: 1   MARFFVD-PQDIKGDTAIITGPDVKHISKVLRMGNGDRLTILDGRGLVFTAEITGMTKDE 59

Query: 65  ----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVIT 114
               +       +    K + VQ +    K ++++ +IQK  E+G      + A R V+ 
Sbjct: 60  VTCHLLGPEVAPAEPNLKVTLVQGLP---KGDKMETIIQKCTELGIYQIIPLAAARSVVR 116

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +       R +   + AA+QC    +P +     L  ++     N   V A E    
Sbjct: 117 LDGKKAAERQQRWQRVAMEAAKQCRRPVIPRVQKLCQLTEVISMIPTNALGVIAWEDEKQ 176

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVA 232
           ++  + L  +     + I IGPEGG+  EE   L     P VT   LGPRILR++TA   
Sbjct: 177 QSLRQLLQGVTMPEEIYIFIGPEGGFDPEEVARLSQRGWPNVT---LGPRILRTETAGPT 233

Query: 233 AMALV 237
           A+ +V
Sbjct: 234 ALTMV 238


>gi|320335223|ref|YP_004171934.1| ribosomal RNA small subunit methyltransferase E [Deinococcus
           maricopensis DSM 21211]
 gi|319756512|gb|ADV68269.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
           maricopensis DSM 21211]
          Length = 228

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSDVQY 84
           ++ +L  VLR++ GD I +F+G+  E  + +S +   G ++      +  ++T Q  V  
Sbjct: 19  EWRHL-RVLRLRAGDTIRVFDGRGAEAEATVSALHEGGATLTLGASVEGAAETPQP-VTL 76

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDIL 141
             + +K ++L  + + + E+G+  I+ + +RY          ++R+R   + A++Q    
Sbjct: 77  AIALLKGDKLADVTRAATELGVARIQLLTSRYADVPDIGPAKLERLRRIALEASKQSRRA 136

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
             P +  P  +  L    D    I       G+   L   H     P V ++ GPEGG+ 
Sbjct: 137 VTPDVLAPIPVTQL--RADGPAFIAH----PGTHARLTD-HLTWDAP-VTVVSGPEGGWT 188

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             E   L    F TP++LGPRILR++TA +A +  + A
Sbjct: 189 DAEVTHLERAGF-TPVTLGPRILRAETAPLALLGAIVA 225


>gi|307243293|ref|ZP_07525460.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM
           17678]
 gi|306493311|gb|EFM65297.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM
           17678]
          Length = 258

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 25/239 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
            G+   +++ VLR  +GD I + +    E+L +I  + K     SI  +++    S+ + 
Sbjct: 21  EGEDVKHISKVLRYDQGDEIEVCDSNKHEYLCRIESIDKTRINLSIVEEIDINRESRVRV 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTIS 133
           S  Q +  P K+ +++ ++QK  E G+  I      R V+           DR       
Sbjct: 81  SLYQGL--P-KSTKMEIILQKLTEAGVDEIVLVNTRRSVVNIKGDKADKKFDRWERIIYE 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV--FADE-TCGSENSLEKLHAIAHIPN- 189
           AA+QC    +P +    + E  L++   N   +  + DE + G + +L+    + +I + 
Sbjct: 138 AAKQCKRGLIPKLRGILSFEEALEDMGKNDINICPYEDEKSLGIKEALQ-TDLVKNIIDK 196

Query: 190 -----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                V I IGPEGG+  EE + +     +  +++GPRI R++TA++ A A+     GD
Sbjct: 197 KDEVRVGIFIGPEGGFTQEENDMVKE-AGIASVTMGPRIFRTETASIVATAITLYELGD 254


>gi|325105650|ref|YP_004275304.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145]
 gi|324974498|gb|ADY53482.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145]
          Length = 236

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 6/210 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS-DVQY 84
           ++  + + VLR+K GD I L +G  G +L +I     K  +  +  + +   K +  +  
Sbjct: 21  EESRHCSKVLRLKIGDRIHLVDGIGGFYLGEIIEDHPKRTKLTIVSKEKDFNKVAFHLHI 80

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R+++ ++K+ E+G+  + PVI  +++      +R+    +SA +Q     L
Sbjct: 81  AIAPTKNIDRIEWFLEKATEIGIQEVTPVICEHSERKDVKTERLEKIMVSAMKQSLKAYL 140

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +  P T + L+ +   +     A   C      E   +        ILIGPEG +  +
Sbjct: 141 PKLNKPQTFKSLISSVGSDVHKYIAH--CIPTEKREIADSFKREEKYLILIGPEGDFSEK 198

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E +      FV P++LG   LR++TAA+ A
Sbjct: 199 EVQIALENGFV-PITLGKSRLRTETAALQA 227


>gi|289676397|ref|ZP_06497287.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae FF5]
          Length = 180

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F + PL +  + +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  R
Sbjct: 3   LSRFFTETPLSL-GEHELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKK-R 60

Query: 67  FKVEY-QSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             V+  +S +   +S ++        +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V 
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVL 170


>gi|73856980|gb|AAZ89687.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 253

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143
           +  ++++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +
Sbjct: 98  RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 157

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I P   LE      D   ++        S N+L        +  V +LIGPEGG  ++
Sbjct: 158 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 212

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 213 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 251


>gi|282877983|ref|ZP_06286792.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310]
 gi|281299984|gb|EFA92344.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310]
          Length = 241

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK-VEYQSRSQTKQSDVQY 84
           ++  +   VLR+K GD I L +G+   + + ++    K   +  V+   + +T +  V  
Sbjct: 21  EEARHAVSVLRLKAGDEIFLMDGEGSFYQANVTLAATKHCMYDIVKALPQQKTWKGHVHL 80

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R+++MI+K  E+G   I  +  R+++     +DR+    I+A +Q      
Sbjct: 81  AIAPTKMMDRMEWMIEKMTEVGFDEITFLDCRFSERKKLRIDRLEKIVIAAMKQSRKAWK 140

Query: 144 PFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P ++P  + + F+ +  +    I         ++ L ++       ++ +L+GPEG +  
Sbjct: 141 PVVHPIMSFQDFVNQQREGGLYIAHCYTEIARKDFLSEIQQANDQQDITMLVGPEGDFSM 200

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +E +      F + +SLG   LR++TA + ++ + Q +
Sbjct: 201 DEVKQALEKGF-SSVSLGQNRLRTETAGLVSIVMSQVV 237


>gi|304403938|ref|ZP_07385600.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus
           YK9]
 gi|304346916|gb|EFM12748.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus
           YK9]
          Length = 254

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 17/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV      +T     GD  H+ + V+RM+ GD+ ++ +G   E ++K + +    R
Sbjct: 1   MQRYFVPTSQFDETTVTLLGDDAHHASRVMRMRSGDSFIVSDGAGREAIAKATSIAAD-R 59

Query: 67  FK---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-T 117
            +   VE  +  +     +    S  K ++++ +IQK  E+G  A  P     +I +Y  
Sbjct: 60  IEADIVEKLAGDREPAWQITIAQSLPKGDKMELIIQKGTEIGAYAFVPFESERMIVQYDA 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R       AAEQ     +P I  P + + L+ +      ++F  E  G   S
Sbjct: 120 KKEAKRLERWEKIAKEAAEQAHRSRIPAIAKPASWKQLVGSIGEYDLVLFCYEEEGRSGS 179

Query: 178 ----LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                + +  IA   N  V +++GPEGG+   E         V  + LG RILR++TA +
Sbjct: 180 GSGLRDAVRPIADRSNARVLVVVGPEGGFTESEAADASGAGAVV-VGLGKRILRTETAGL 238

Query: 232 AAM 234
            A+
Sbjct: 239 VAL 241


>gi|113955056|ref|YP_730866.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9311]
 gi|113882407|gb|ABI47365.1| conserved hypothetical protein TIGR00046 [Synechococcus sp. CC9311]
          Length = 254

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 10/237 (4%)

Query: 5   SHLKRLFVDFPLCIKTQGKAS----GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           + L+RL ++        G        D+ HYL  VLR++ G  + + +G+   W   +  
Sbjct: 3   AELRRLLIEPKRLADRDGNGCLVLRDDERHYLRRVLRLRSGSPVAVVDGRGHLWEGSLQE 62

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQN 119
            G+ +      ++ +  K   +    + ++   +D +++ + E+G+  I+P+   R T  
Sbjct: 63  EGQLL-LPNSCETTTPAKTPQLGLAIALVRRG-MDDVMRMACELGVDCIQPLQAARSTPQ 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
             Y  +R +     A EQC+ L +P + P  + +       +N  +  A        +LE
Sbjct: 121 ADYKPERWQLILKEAVEQCERLWMPRLLPLASTDDWWTMHGNNDTLAIATTRLEELTALE 180

Query: 180 KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                  + +  + + IGPEGG+   E+    S  +  P+SL   ILRS TAA+A +
Sbjct: 181 PWLRRQTLKDNCIWLAIGPEGGWDPLEQAKALSEGWA-PISLSEDILRSSTAAIAGV 236


>gi|161986456|ref|YP_311922.2| 16S ribosomal RNA methyltransferase RsmE [Shigella sonnei Ss046]
          Length = 244

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 12/160 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTL 143
           +  ++++ IQKS+E+G+  I P+ +        ++  +  + + +   I+A EQC    +
Sbjct: 89  RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRV 148

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I P   LE      D   ++        S N+L        +  V +LIGPEGG  ++
Sbjct: 149 PEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLP-----LPVERVRLLIGPEGGLSAD 203

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E        F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 204 EIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFGD 242


>gi|115350589|ref|YP_772428.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria
           AMMD]
 gi|115280577|gb|ABI86094.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia ambifaria AMMD]
          Length = 255

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           A VLR++ GD + LF+G  G++ +++  + K         + +Q +  D      P +  
Sbjct: 35  AQVLRLQPGDTLALFDGSGGQYRARLVEIDK-------RNALAQIEAFDPAEAEPPYRVT 87

Query: 92  --------NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
                   +++D++I+K+VE+G+ A+ P+ T         +     +   R    ++ EQ
Sbjct: 88  LAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLSGERADKRVAHWRGVVRASCEQ 147

Query: 138 CDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           C    +P + P       L        D   +++ +        SL      A    V +
Sbjct: 148 CGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRASIPFASLPDAPPAAA---VTL 204

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           LIGPEGG   +E+    +  F T LSLGPR+LR++TA  A +A + A  G W
Sbjct: 205 LIGPEGGLSPDEENVARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 255


>gi|281200678|gb|EFA74896.1| hypothetical protein PPL_11930 [Polysphondylium pallidum PN500]
          Length = 275

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 25/252 (9%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L+R FV+  PL ++   +  G Q+ +L   LR+KEG  + LF+G +   ++ I  +GK+ 
Sbjct: 4   LRRFFVENIPLMLRGSVRLDGSQHLHLKKSLRLKEGQEVELFDG-NQSVIAVIDSIGKNH 62

Query: 66  RFKVEYQSRSQTKQSDVQYIF--------SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
              +  +    T  +D Q+ F        S  K +R D+M++K  E+ + ++  + T Y+
Sbjct: 63  SDLIISKINESTSSADNQHTFDSRIDIASSLPKASRGDWMVEKLTELDVRSLYLIETDYS 122

Query: 118 QN------THYNMDRVRTYTISAAEQCDIL-----TLPFIYPPT--TLEFLLKNWDHNCQ 164
           ++      T    DR +   I AA+Q  I+     T   +  PT   L  L++ +     
Sbjct: 123 KSSKSSNITDNKFDRYQRIIIEAAKQSKIVKDNLWTHIIVGHPTGQPLPQLIEKF--KTD 180

Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
            +  +    + NS+E L      P + +++G EGG+   E   L  L  V P + G  IL
Sbjct: 181 YIKNNNDNNNNNSVESLSIPKVSPRLLVMVGSEGGFTENEINKLSKLSNVYPTNFGNSIL 240

Query: 225 RSDTAAVAAMAL 236
           R +T ++ +  +
Sbjct: 241 RMETFSLLSAGI 252


>gi|225012984|ref|ZP_03703401.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-2A]
 gi|225002883|gb|EEG40862.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-2A]
          Length = 239

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 11/227 (4%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSI- 65
           LF D  + +KT+    + ++  ++A VLR   G+ I + NG   EW   +++V   K+I 
Sbjct: 3   LFYDALIDLKTKEFTFNKEESKHIAKVLRKSSGETITVTNGSGLEWTGTLTFVSPNKTIA 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           + K  +Q     K+  +    +P K N R+++M++K  E+G+ +I PV+  +++      
Sbjct: 63  QIKKSFQHLE--KKHQIHLAIAPTKNNSRMEWMLEKLTELGIASITPVLCDHSERKIIKK 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R     ++  +Q     LP I  P +    +   + + QI  A   C  +     +   
Sbjct: 121 ERFEKIIVAGLKQAQHFFLPKINDPMSFSKFIATPEFD-QIFIAH--CEDQPKQRLIDIP 177

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                + ++IGPEG +   E         + P+SLG +  R++TA +
Sbjct: 178 LSGTQICLMIGPEGDFSPSEINAAIQKEII-PISLGNQRFRTETAGL 223


>gi|150020162|ref|YP_001305516.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho melanesiensis
           BI429]
 gi|149792683|gb|ABR30131.1| protein of unknown function DUF558 [Thermosipho melanesiensis
           BI429]
          Length = 226

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 17/204 (8%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI-FSPI-KTNR 93
           +R+KEGD +   +GK GE+L KI  + K   F    +S+   K      + F+P  K  R
Sbjct: 27  VRIKEGDIVKSTDGKGGEFLVKIEKIKKKKSFGTILESKYIEKDEKSNLVLFAPSGKWER 86

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI-SAAEQCDILTLPFIYPPTTL 152
           L ++I+KSVE+G+  I    T+Y+   + + +   +  I ++A+QC     P        
Sbjct: 87  LRWLIEKSVELGVDKIYITKTKYSNRDYRDKEEKISLVIRNSAKQCIRYHFP------EF 140

Query: 153 EFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
           +F+  K  +    I         EN  E +H     PN + ++GPEGG+  +EK+ L+  
Sbjct: 141 KFISFKEIEKYASINTYFLDFEGENIPEIIH-----PNTSFIVGPEGGFSEDEKKFLNVN 195

Query: 212 PFVTPLSLGPRILRSDTAAVAAMA 235
              TP+ LG + LR +TAA   ++
Sbjct: 196 --FTPVVLGKKTLRFETAAFVFLS 217


>gi|150008444|ref|YP_001303187.1| 16S ribosomal RNA methyltransferase RsmE [Parabacteroides
           distasonis ATCC 8503]
 gi|255014179|ref|ZP_05286305.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. 2_1_7]
 gi|256841572|ref|ZP_05547079.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262383279|ref|ZP_06076415.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298376306|ref|ZP_06986262.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19]
 gi|149936868|gb|ABR43565.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737415|gb|EEU50742.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262294177|gb|EEY82109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298267343|gb|EFI09000.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19]
          Length = 232

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV---- 82
           ++  +   VLR+ EGD I+L +G+   + + IS          E       KQ D+    
Sbjct: 18  EEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPK---HCEVTLLESWKQPDLWNFN 74

Query: 83  -QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
                +P K  +R+++ ++K+ E+G+ AI  +  R+++       R+    +SA +Q   
Sbjct: 75  LHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIKPIRLEKILVSAMKQSQK 134

Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            TLP +   T   +F+   +D    I   +E    E  L K H      N  ILIGPEG 
Sbjct: 135 ATLPALEGMTDFKKFVATPFDGRKFIAHCEE---GEKPLLK-HTYQPGENALILIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +  EE +      F  P+SLG   LR++TAA+ A
Sbjct: 191 FSPEEIKLAQENGF-EPISLGESRLRTETAALVA 223


>gi|298529346|ref|ZP_07016749.1| protein of unknown function DUF558 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510782|gb|EFI34685.1| protein of unknown function DUF558 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 243

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 36/238 (15%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
           P C+++      D+ H+L+ VLR+  G+ I + +G+           G+   F+V   SR
Sbjct: 14  PYCLES------DEAHHLSRVLRISAGEKIRVLDGR-----------GRLGIFEVRTSSR 56

Query: 75  SQT------------KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
            +              Q+ +       K++R  ++++K+VE+G+  +     + +Q    
Sbjct: 57  KEAGLFPENIWRVPKPQTRLHLALGWNKSSRRSWLLEKAVELGVWRLVFWTGKNSQGRMD 116

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N  Y     +  T +   +      P        E +    +   +I   ++ C  ++ L
Sbjct: 117 NASYQNWHKKIVTAAKQSRNPWFPEPVFLSGNVQELVQYARNIPVRIALWEQEC--QDDL 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             L+     P+  + IGPEGG   EE + L    F  P SLGPR+LR +TAA++ + L
Sbjct: 175 VSLYQAGPEPDRVVAIGPEGGLTQEELQVLMQAGF-KPASLGPRVLRWETAALSVLCL 231


>gi|134300332|ref|YP_001113828.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum reducens
           MI-1]
 gi|134053032|gb|ABO51003.1| protein of unknown function DUF558 [Desulfotomaculum reducens MI-1]
          Length = 247

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 24/229 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDV 82
           +G    +++ VLRM+ G+N+ L +G+   +L++I  + K  +  ++ E Q  +      V
Sbjct: 19  NGPDVKHISRVLRMETGNNLTLLDGRGNVYLAQILEINKQEVHCRILEQQEATSEPTVKV 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAE 136
             +    K ++++ +IQK  E+G+ +I      R ++    +     + R +   + AA+
Sbjct: 79  TLVQGLPKGDKMETIIQKCTELGVSSIIPLAAARSIVKLDAKKAAERVQRWQRVAVEAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-------ETCGSENSLEKLHAIAHIP- 188
           QC    +P +Y       +L +WD   Q +  D       E   +++  E L      P 
Sbjct: 139 QCRRSGIPEVY-------MLSSWDEILQQIPPDALVLMPWEGERTKSLREVLQTRPMAPG 191

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            V I IGPEGG+  EE E +    F  P++LG RILR++TA  AA+ +V
Sbjct: 192 QVYIFIGPEGGFEEEEVERVKEKGFY-PVTLGSRILRTETAGPAALTMV 239


>gi|320535676|ref|ZP_08035766.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
 gi|320147468|gb|EFW38994.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
          Length = 256

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 17/251 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           +K+L V+  + +    K SG  YHYLA VLR + GD ++L     G   ++I  +     
Sbjct: 1   MKQLLVNAEVDVDGTVKLSGKDYHYLATVLRKRIGDIVILDLPSCGTVAAEIIDIRAQKK 60

Query: 65  ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---Q 118
              ++ K   +  +Q    ++  +   I+  ++D +I+++ E+G+  I P+   ++   +
Sbjct: 61  ELDLQIKTGLEGLTQPPPFEIVLLQWLIRGQKMDSVIRQATELGVSRIIPIAGEFSLIKE 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETC 172
                 +R R     A +Q   +    I    TL+  LKN +   Q      ++F ++  
Sbjct: 121 ENEKQTERRRRIIKEARQQSGSVIQTEISSVQTLDCALKNLNTAYQKSSIVKLLFTEKK- 179

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S +S+      +    V I IG EGG   +E   L +  F+ P+ L   ILR++TAA+ 
Sbjct: 180 -SADSMLHTCLSSRPKTVIIAIGAEGGMSVQEVTGLKNAGFI-PVHLHTNILRAETAAIP 237

Query: 233 AMALVQAICGD 243
           A A V  I  +
Sbjct: 238 ACAAVHTILSE 248


>gi|73662489|ref|YP_301270.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495004|dbj|BAE18325.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 250

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 25/247 (10%)

Query: 7   LKRLFVDFP------LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           ++R F+D         CI  QG       H++++V+R +  D I++       +  K+  
Sbjct: 1   MQRYFIDQNADVNQRFCITDQGDI-----HHISNVMRHQVDDYIIITFADHYVYKCKLVN 55

Query: 61  VG-KSIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPV 112
           +G + I   +E +    T+   +V      IK+++ ++M+QKS E+G      +G  R V
Sbjct: 56  IGAEGIMVSLEERIDVDTELPQNVTICSGLIKSDKYEWMLQKSTELGASEFIAVGMKRSV 115

Query: 113 ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
           +          ++R +     AAEQ   L +P I    TL  +LK+      I+ A E  
Sbjct: 116 VKITENKIAKKLERWQKIIKEAAEQSYRLAIPTIQYQATLNDVLKSTKTYDYILIAYEDA 175

Query: 173 GSENSLEKLHAIAH--IPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                + +  ++     PN  V I+ GPEGG   +E   L  + +   + LGPRILR++T
Sbjct: 176 AKSGEVSQFKSLVQQFKPNDKVLIIFGPEGGLDEDEVSLLQDVGY--QIGLGPRILRAET 233

Query: 229 AAVAAMA 235
           A +  ++
Sbjct: 234 APLYVLS 240


>gi|301309334|ref|ZP_07215276.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3]
 gi|300832423|gb|EFK63051.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3]
          Length = 232

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV---- 82
           ++  +   VLR+ EGD I+L +G+   + + IS          E       KQ D+    
Sbjct: 18  EEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPK---HCEVTLLESWKQPDLWNFN 74

Query: 83  -QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
                +P K  +R+++ ++K+ E+G+ AI  +  R+++       R+    +SA +Q   
Sbjct: 75  LHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIKPIRLEKILVSAMKQSQK 134

Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            TLP +   T   +F+   +D    I   +E    E  L K H      N  ILIGPEG 
Sbjct: 135 ATLPALEGMTDFKKFVATPFDGRKFIAHCEE---GEKPLLK-HTYQPGENALILIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +  EE +      F  P+SLG   LR++TAA+ A
Sbjct: 191 FSPEEIKLAQENGF-EPISLGESRLRTETAALVA 223


>gi|329904946|ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547805|gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 242

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R     PL I        +  H++  V+R++ G  + LFNG   E+++ +S + K  R
Sbjct: 1   MPRFHCPLPLAIGDILVLPDNVAHHI-QVIRLQAGSMVTLFNGDGNEYVATLSVLEKK-R 58

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT----NRLDYMIQKSVEMGMGAIRP------VITRY 116
             VE ++ ++ +  ++ Y  +  +     +++D++I+K+VE+G   I+P      V+   
Sbjct: 59  VTVEIKTCTE-RSVELPYAITLAQALPEASKMDWIIEKAVELGAAGIQPLSAQRCVVRLS 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +         +   +SA+EQ     L  + P +     +   D + +I+    T  ++ 
Sbjct: 118 AERAEKRQLHWQGIIVSASEQSGRNRLAQLAPVSDFSRWIAQQDIHKRILL---TPRADQ 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           SL           V +LIGPEGG  S+++E L        LS+GPR+LR++TA +AA+A+
Sbjct: 175 SLADWARHQPPQAVTLLIGPEGGL-SDDEENLAIAHGAIALSMGPRVLRTETAGLAALAM 233

Query: 237 VQAICGD 243
           +    GD
Sbjct: 234 LAGAWGD 240


>gi|94970268|ref|YP_592316.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552318|gb|ABF42242.1| protein of unknown function DUF558 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 234

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 12/218 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G    +LA VLR + G    +  G      +  S     + F +  +  S T  + +  
Sbjct: 19  TGTNAAHLARVLRARVGQQFDISLGTHIRRGTITSIAEDRVEFTLGEELPS-TAITPISL 77

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQCD 139
             +  K +RL++ I+K  E+G+  I PVI R T+     +    ++R R   + AA+Q  
Sbjct: 78  YLAVFKFDRLEWAIEKCTELGVAKIIPVIARRTEPHLAASAAKRVERWRRIALEAAQQSR 137

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNVAILIGPEG 198
               P I  P  L+  L+      +IV A+     +N L   L A      V++ IGPEG
Sbjct: 138 RAAPPEITEPVKLKQTLEAVGQ--RIVLAE--TEQQNMLRDVLEASEQSREVSLAIGPEG 193

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           G+  +E        +    SLGP ILR++TA+++A+A+
Sbjct: 194 GWTDDELTQFDQSGWQRA-SLGPTILRAETASISAVAI 230


>gi|169349834|ref|ZP_02866772.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552]
 gi|169293402|gb|EDS75535.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552]
          Length = 246

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 11/240 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D  L  K     +G+  H+L +V+R K G+ I+  +     +L  +  + + + 
Sbjct: 1   MQRYFIDEDLKDKDCLILTGNDLHHLKNVMRSKNGEKIICIDINGMVYLCVLDDLDQGLI 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----TQNTHY 122
             VE    +     +V  +++  K ++ + ++QK+ E+G+  I P+ITR     +    +
Sbjct: 61  KIVEELDENNELDVEVTLVYALPKGDKFELVLQKTTELGVSRIVPLITRRCVVKSDKAKF 120

Query: 123 NMDRVRTYTI--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
           +    R   I   A +Q     +P I     L+  LK +  +  +V  +E   ++     
Sbjct: 121 SKKLTRYEKILKEATQQSRRNKVPEIVNVIKLDE-LKEYLGDYNLVAYEEKAKNDTDFAL 179

Query: 179 -EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  +     + I++G EGG+  EE   + S+  +   SLG RILRS+TA +  ++++
Sbjct: 180 KECLKQLNPGDKITIIVGSEGGFDYEEISMMESMN-INACSLGKRILRSETAPLYLLSVI 238


>gi|330815513|ref|YP_004359218.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3]
 gi|327367906|gb|AEA59262.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3]
          Length = 253

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           S + R FVD PL  +       +   ++  VLR++ GD + LF+G  G++ +++  +GK 
Sbjct: 7   SAVPRFFVDVPLADQASIVLPAEVARHV-QVLRLEPGDALTLFDGSGGQYRAELVEIGKR 65

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            ++   + +++R       +         +++D++I+K+VE+G+  + P      V+   
Sbjct: 66  TAVARTLAFEARELETPYRITLAQGIAGGDKMDWLIEKAVELGVAGVAPLSTSRGVVRLS 125

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETC 172
            +     +   +    +A EQC    +P +   +     L  L    +   +++ +    
Sbjct: 126 GERADKRVAHWQGVVRAACEQCGRNRVPAVAAVSDYAAWLAALPSPVEGEVRLMLSPR-- 183

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +  +  +L   A    + +LIGPEGG    E++      F   + LG R+LR++TA +A
Sbjct: 184 -ASIAFAELPKQAPTGEIRLLIGPEGGLSPAEEDAARECGF-QAIVLGARVLRTETAGMA 241

Query: 233 AMALVQAICGDW 244
            +A + A  G W
Sbjct: 242 MLAALAARWGGW 253


>gi|163754910|ref|ZP_02162031.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1]
 gi|161324977|gb|EDP96305.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1]
          Length = 235

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDV 82
           S ++  ++  VLR KE D + + NGK G   S I  V   K+   K++       K   +
Sbjct: 19  SKEESRHIVRVLRKKEDDILHITNGK-GYIFSAIITVADQKNCMVKIQSFEFQPQKSYKL 77

Query: 83  QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K N R ++ ++K+ E+G+  I P+I  +++      +R      SA +Q    
Sbjct: 78  HLAVAPTKMNDRYEWFLEKATEIGIDTITPIICDHSERKVIKAERFEKIIQSATKQSLSA 137

Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             P + P  +   F+  + D    I   +E    + SL++  A+    +V ILIGPEG +
Sbjct: 138 YFPKLKPAISFSNFISTHTDEQLFIAHCEE--NEKQSLKE--ALKIQKDVTILIGPEGDF 193

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            ++E +      ++ P++LG   LR++TAA+ A
Sbjct: 194 STKEIQLALDHNYI-PVTLGETRLRTETAAIVA 225


>gi|194334810|ref|YP_002016670.1| 16S ribosomal RNA methyltransferase RsmE [Prosthecochloris
           aestuarii DSM 271]
 gi|194312628|gb|ACF47023.1| protein of unknown function DUF558 [Prosthecochloris aestuarii DSM
           271]
          Length = 245

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 115/250 (46%), Gaps = 35/250 (14%)

Query: 10  LFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           LF   P CI    +     G+++ ++  VLR  EG ++ L +G      + I  + K  R
Sbjct: 3   LFYTPPECIDLTARTLVVEGEEFFHIVRVLRRTEGQSLHLTDGCGLSINAVIDSIDKG-R 61

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 S    +   ++V    S +K+  R D+ ++K+ E+G+ +I P++T  T      
Sbjct: 62  LNASIASFQHIEPPATEVTVAISLLKSAQRFDFFLEKATELGVTSIIPMVTSRTVSQPRG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSEN 176
           +     ++R +   I+A+ Q    +LP I  P    E L +   ++ +++  + +C S  
Sbjct: 122 EKVQRKVERWKKVLIAASIQSKRYSLPDICEPRCFGEVLSEGGSYDERLIPYESSCQS-- 179

Query: 177 SLEKLHAIAHIPNVAI-------LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                      P+VA+       +IG EGG+   E +      F T +S G  ILR++TA
Sbjct: 180 -----------PSVALAGRKTLFVIGGEGGFSETEVQQAKDSGF-TEISFGSSILRAETA 227

Query: 230 AVAAMALVQA 239
           AV A+A+ +A
Sbjct: 228 AVFAVAMARA 237


>gi|163788243|ref|ZP_02182689.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium
           ALC-1]
 gi|159876563|gb|EDP70621.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium
           ALC-1]
          Length = 234

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 20/216 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWL-------SKISYVGKSIRFKVEYQSRSQTKQ 79
           ++  ++  VLR K+GD + + NG    WL       + I +   SI  K     RS    
Sbjct: 21  EESRHIVKVLRKKDGDKLHITNGNG--WLFEAELSIADIKHCSVSINSKTLQGKRSY--- 75

Query: 80  SDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138
            ++    SP K N R ++ ++K+ E+G+  I P+I  +++      +R      SA +Q 
Sbjct: 76  -NLHLAVSPTKMNDRYEWFLEKATEIGIETITPIICDHSERKVVKTERFEKIIQSAMKQS 134

Query: 139 DILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
               LP +  P    +F+ +++     I   +ET   + SL+    I+   +  ILIGPE
Sbjct: 135 LQCYLPKLNAPIAFKDFINEDFSGQKFIAHCEET--DKKSLKS--QISKNKDCTILIGPE 190

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           G +  +E E      ++ P++LG   LR++TAA+ A
Sbjct: 191 GDFSVKEIEMALQHNYI-PVTLGETRLRTETAAIVA 225


>gi|115374350|ref|ZP_01461634.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368660|gb|EAU67611.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 216

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 9/201 (4%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           +LR+ EG ++ +F+G    + ++++ V  +  R  +   +RS   +  +  +    K ++
Sbjct: 1   MLRLSEGASLEVFDGTGRAFEARVAAVDAREARLTL-GAARSTPPRRALSVLQGLPKGDK 59

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           L++++QK  E+G  A  PV T  +      +       R       AA QC    +P ++
Sbjct: 60  LEWVLQKGTELGAAAFYPVDTARSVVKLEPKRAGERTLRWEKIVEEAARQCRRNDVPQVH 119

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
           PP  L    +      Q++  DE   +    E   A A    VA+++GPEGG   EE   
Sbjct: 120 PPAALLDRARALPPGTQLLVLDEEETAVPLGEAFRACAPGAPVALVVGPEGGLTREEVAA 179

Query: 208 LHSLPFVTPLSLGPRILRSDT 228
           L +L     ++LG  ILR++T
Sbjct: 180 LRAL-GARGVTLGALILRTET 199


>gi|291458017|ref|ZP_06597407.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419349|gb|EFE93068.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 268

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 119/250 (47%), Gaps = 33/250 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G+   +L +VLR + G+ +L+ +G+  ++  +++ +G+  I  ++ ++       +D+  
Sbjct: 20  GENLRHLKNVLRARPGERVLISDGEGTDYECEVAELGEEEILLRICFREEIHELPADIWL 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
                K++++++++QK+VE+G+  I P+ +R T              R +    +AA+Q 
Sbjct: 80  FQGLPKSDKMEFILQKAVELGVRGIVPLESRNTVVRLNPGKAAAKRQRWQAIAEAAAKQS 139

Query: 139 DILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL--------------HA 183
               +P +  P   +  L    D + +++  +   G+E + E L               A
Sbjct: 140 KRSIIPEVMLPMRWKDALSLLPDFSLRLIPYENARGAERTRELLLGLRKPWKEAARPAEA 199

Query: 184 IAHIPN----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            A   N          +A+ IGPEGG+ SEE+        +  LSLG RILR++TAA+ A
Sbjct: 200 GAGAENEKKTPDRRRKIAVFIGPEGGF-SEEEIAEARAAGMECLSLGKRILRTETAALCA 258

Query: 234 MALVQAICGD 243
           ++L+     D
Sbjct: 259 LSLLMLFLED 268


>gi|226324635|ref|ZP_03800153.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758]
 gi|225207083|gb|EEG89437.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758]
          Length = 245

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSD 81
           +  G   +++ +VLRMK  +   + +G+   +L ++ +Y        +  +  + T+ + 
Sbjct: 17  RIEGGDVNHMKNVLRMKLHEKAEISDGESRTYLCEVEAYEEDVAVLHILEEMEADTEPAS 76

Query: 82  VQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
             Y+F  + K+++++ ++QK+VE+G+  + PV  + +      +      DR  +   SA
Sbjct: 77  KLYLFQGLPKSDKMELIVQKAVELGVYQVIPVAMKRSVVRLDDKKAAKKADRWNSIAESA 136

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A+Q     +P +  P + +  LK  +  +  ++  +   G E + E +  I    +V I 
Sbjct: 137 AKQAGRSRIPEVTMPLSYKEALKMAEELDVTLLPYELAGGMEVTREVIRQIKSGQSVGIF 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           IGPEGG+  EE +   S+     ++LG RILR++TA +A +A++
Sbjct: 197 IGPEGGFEPEEVDAAVSMG-ARVITLGRRILRTETAGLATLAIL 239


>gi|186477349|ref|YP_001858819.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phymatum
           STM815]
 gi|184193808|gb|ACC71773.1| protein of unknown function DUF558 [Burkholderia phymatum STM815]
          Length = 251

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 42/263 (15%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI------S 59
           + R FV  P   KT    S  D+ +    VLR++ GD + LFNG  GE+ ++I       
Sbjct: 6   MPRFFVGTPF--KTDDIVSLPDEVNRHVRVLRLQPGDTVSLFNGDGGEYGAEIVDMDRHG 63

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117
            + + + F+ + +     + +  Q I     ++++D++I+K+ E+G     P+ T  +  
Sbjct: 64  TIVRIVGFR-DIECEPPYRLTLAQGIAG---SDKMDWLIEKATELGACEFVPLTTTRSVV 119

Query: 118 -------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQI 165
                  Q    +  R+     ++ EQC    LP + P   L   L        D   ++
Sbjct: 120 RLAGERAQRRQVHWQRI---VQASCEQCGRNRLPQVMPTRELATWLSTMPKEPVDGELRL 176

Query: 166 VFADETCGSENSLE----KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           + +       ++L     K+ A+       +L+GPEGG+ + E+    +  F T + LGP
Sbjct: 177 LLSPRASVPFSALPVEPPKVRAL-------VLVGPEGGFSAAEEAAAAAHGF-TAVGLGP 228

Query: 222 RILRSDTAAVAAMALVQAICGDW 244
           R+LR++TA +A ++ + A  G W
Sbjct: 229 RVLRTETAGIAVLSALAARWGGW 251


>gi|228476013|ref|ZP_04060721.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           hominis SK119]
 gi|228269836|gb|EEK11316.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           hominis SK119]
          Length = 250

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 24/225 (10%)

Query: 30  HYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----DVQ 83
           H++ +V+R   G+ I++ FN K   ++S+I+ +  +   ++E    +Q         DV 
Sbjct: 25  HHIKNVMRNTVGNKIIINFNDKKV-FISEITNINSN---QIEVLPINQLDIDTELPVDVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                IK ++ ++++QKS E+G      +G  R V+          +DR +     AAEQ
Sbjct: 81  ICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQENKVQKKIDRWQKIVKEAAEQ 140

Query: 138 CDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAI 192
              L +P +   + L+ +   + N+D+   I + DE    E S  K  L+       V I
Sbjct: 141 SYRLVIPDVKFQSNLKVIYDTINNYDY-VLIAYEDEAKHGEKSRFKNILNNFQTNDRVLI 199

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG+  +E +    +     + LGPRILR++TA + A++ +
Sbjct: 200 IFGPEGGFSDKEIDLFREVSL--NVGLGPRILRAETAPLYALSAI 242


>gi|311747456|ref|ZP_07721241.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1]
 gi|126574815|gb|EAZ79186.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1]
          Length = 234

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 18/219 (8%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSD--VQYIF 86
           +L  VLR +EGD I + +GK   +  K+  S   KSI   ++  S  +    D  +    
Sbjct: 23  HLTRVLRKREGDIIHVTDGKGSIYECKLVDSNPKKSI---LQIISSEKVPADDYYIHLAI 79

Query: 87  SPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           +P K+ +R+++MI+K  E+G   +  + +  ++ +    +R+    ISA +Q      P 
Sbjct: 80  APTKSPDRMEWMIEKITEIGFHELTLLSSMNSERSFLKTERLHKKMISACKQSLKFHTPK 139

Query: 146 IYPPTTLEFLLKNWD-HNCQ--IVFADETCGSENSLEKLHAIAHI-PNVAILIGPEGGYH 201
           I   T L+    N D  + Q  I + D     EN    L  +A    N  ILIGPEG + 
Sbjct: 140 INQTTDLKEFFNNSDFEDFQKFIAYVD-----ENHDHHLMDVAKPQANYLILIGPEGDFS 194

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +E E      F  P+SLG   LR++TA +AA+ ++Q +
Sbjct: 195 PQEIEKAFEFNF-KPVSLGKSRLRTETAGLAAVQMLQVL 232


>gi|320527295|ref|ZP_08028480.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204]
 gi|320132319|gb|EFW24864.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204]
          Length = 247

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 13/238 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F D PL +  +   + DQ H+  +V+R+      L+++G  G +    S     + 
Sbjct: 5   MQQYFSDTPLVVGQEYILNKDQAHHAKNVVRLHHETIRLVYDGI-GYFADAYSKGKDFVA 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNT 120
             +E   R      +V      I+  + + ++QK+ E+G+       +IR V+    +  
Sbjct: 64  MVLEKDERINEIGVEVTLAMGLIRKEKFELVLQKACELGVTRIVPFESIRCVVRAKKEKE 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLE 179
                R       AAEQC    +P I P   L+ L+K   D N   V   E   S++   
Sbjct: 124 DKQQARRIDILQEAAEQCKRNWIPEITPIVQLKDLVKYRSDVN---VLPYENAYSKSKF- 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               ++   +V  +IGPEGG+  EE E L    F   ++LG RILR++TAA+ A A++
Sbjct: 180 MTEVLSPGQSVTFVIGPEGGFAPEEVEFLQQNGF-EAITLGKRILRAETAAMYACAVI 236


>gi|314936302|ref|ZP_07843649.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654921|gb|EFS18666.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 250

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 24/225 (10%)

Query: 30  HYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----DVQ 83
           H++ +V+R   G+ I++ FN K   ++S+I+ +  +   ++E    +Q         DV 
Sbjct: 25  HHIKNVMRNTVGNKIIINFNDKKV-FISEITNINSN---QIEILPINQLDIDTELPVDVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                IK ++ ++++QKS E+G      +G  R V+          +DR +     AAEQ
Sbjct: 81  ICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQENKVQKKIDRWQKIVKEAAEQ 140

Query: 138 CDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAI 192
              L +P +   + L+ +   + N+D+   I + DE    E S  K  L+       V I
Sbjct: 141 SYRLVIPDVKFQSNLKVIYDTINNYDY-VLIAYEDEAKHGEKSRFKNILNNFQTNDRVLI 199

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG+  +E +    +     + LGPRILR++TA + A++ +
Sbjct: 200 IFGPEGGFSDKEIDLFREVSL--NVGLGPRILRAETAPLYALSAI 242


>gi|146302321|ref|YP_001196912.1| hypothetical protein Fjoh_4594 [Flavobacterium johnsoniae UW101]
 gi|146156739|gb|ABQ07593.1| protein of unknown function DUF558 [Flavobacterium johnsoniae
           UW101]
          Length = 235

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 8/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQY 84
           ++  ++  VLR K+ D + + NG+   + ++I+     K I   V    +S   +  +  
Sbjct: 21  EESKHIIKVLRKKDSDILHVTNGQGLLFETEITLASDNKCI-VSVLSIKKSPEPKFRLHL 79

Query: 85  IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K N R ++ ++K+ E+G+  I P+I   ++    N++R     +SA +Q + + L
Sbjct: 80  AVAPTKMNDRFEWFLEKATEIGIQEITPIICDRSERKVINLERFEKIVLSAMKQSNEMFL 139

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +    + +  +K  +   Q +   E    ++  E L +     NV +LIGPEG + SE
Sbjct: 140 PKLNDAVSFKEFIKQKNQGLQFIAHCEETDKKSLKESLKSNE---NVTLLIGPEGDF-SE 195

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           ++  L       P++LG   LR++TAAV A
Sbjct: 196 KEIALALENNYKPVTLGNTRLRTETAAVVA 225


>gi|304384219|ref|ZP_07366634.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973]
 gi|304334720|gb|EFM00998.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973]
          Length = 246

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIK-T 91
           VLR+  GD I L +GK   + +++S         V  +S  Q    +  +    +P K T
Sbjct: 29  VLRLNVGDEIFLMDGKGVFFRAEVSMTSSKHCSYVIKESMPQCPAWRGHIHLAIAPTKMT 88

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
            R+++M +K+ E+G  A+  +  +Y++      DR+    ISA +Q     LP ++P  +
Sbjct: 89  ERMEWMTEKATEVGFDALTFLHCQYSERKTLRTDRMERIAISAMKQSRKAWLPAVHPLMS 148

Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---------NVAILIGPEGGYHS 202
            +  +     +C   F    C   + +++      I          +V +LIGPEG +  
Sbjct: 149 FKDFIAQ--PHCGRKF---ICHCYDEIDRKDFFTEISREPVDDADCDVCVLIGPEGDFSL 203

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +E +      FV+ +SLG   LR++TA ++A+ + Q
Sbjct: 204 DEVKQAIGCGFVS-VSLGQSRLRTETAGLSAVMMAQ 238


>gi|134137877|gb|ABO53620.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 262

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 46/267 (17%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD ++LF+G  G++ +++      
Sbjct: 15  AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQL------ 67

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R+   Q D    F P++                +++D++I+K+VE+G+ A+
Sbjct: 68  ----VEIDKRNALAQLDA---FEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 120

Query: 110 RPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            P+ T         +     +   R    ++ EQC    +P +       F    W    
Sbjct: 121 VPLTTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPEVA--AVRGF--GAWLDAL 176

Query: 164 QIVFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPL 217
               AD       S       A +P+      V +LIGPEGG   +E+    +  F T L
Sbjct: 177 PAAPADGELRLLLSPRASIPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TAL 235

Query: 218 SLGPRILRSDTAAVAAMALVQAICGDW 244
           SLGPR+LR++TA  A +A + A  G W
Sbjct: 236 SLGPRVLRTETAGAAVLAALAARWGGW 262


>gi|332978382|gb|EGK15104.1| 16S rRNA methyltransferase RsmE [Psychrobacter sp. 1501(2011)]
          Length = 305

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 45/260 (17%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV---EYQSRSQTKQSDV 82
           D YH+   VLR K G+  L+F+G  G+ + ++  +  KS + ++   +    +    S +
Sbjct: 49  DIYHHWCRVLRAKVGEQSLIFDGLGGQSIVELESIDKKSAQVRIVAHDTDDNTTAYYSAI 108

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136
             + S  + +R+DY IQK+ E+G  AI+ + +++ +           ++  +   +SA E
Sbjct: 109 AIVMS--RGDRMDYAIQKATELGATAIQLLTSQHGEVRLKANQVDKKLNHWQQVALSACE 166

Query: 137 QCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADET----------------CGSENS 177
           QC +   P +  P ++E  ++      H+     A++T                  S+  
Sbjct: 167 QCGLNRPPLVMSPVSIEQCIQQQGGEPHSDVSYLANDTYYQQYFNQPTLPLVLAVPSQQE 226

Query: 178 LEKLHAIAHI-------------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
            ++L   A I             P   ILIG EGG    E        ++ P  LG R+L
Sbjct: 227 KQQLDINASIKRHFAQALQTPSKPRFDILIGAEGGLSESEYSQARDSDYL-PWQLGNRVL 285

Query: 225 RSDTAAVAAMALVQAICGDW 244
           R++TA V A+A +  I  ++
Sbjct: 286 RTETAPVVALATLMYISENF 305


>gi|313673214|ref|YP_004051325.1| hypothetical protein Calni_1254 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939970|gb|ADR19162.1| protein of unknown function DUF558 [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 233

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 17/229 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64
           LKR ++D  L  + +     D YH++ +VLR K GD  +  N  D E      Y G  +S
Sbjct: 5   LKRFYIDKDLTDEIE--IDEDMYHHIKNVLRTKIGDKFIFIN--DSEVGEYQFYFGMKRS 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN- 123
             F +  +   +     +      ++    D +++K  E+G+  + PVIT+ +  T  N 
Sbjct: 61  GIFTLNNKKSHEILDYKLNVYLGILQREYFDTVMEKLGEIGVTNVIPVITKRSIQTVNNN 120

Query: 124 -MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R++   I  A Q +   LP +     +  +  N D+N  +    E   S+N +E   
Sbjct: 121 TVERIKKLLIKGALQAEHDFLPSLDAVLNISEITPNTDNNFLLY---ERKESKNRME--- 174

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                 +V+++IGPEGG+  +E E L    FV P+S    +L+++TAA+
Sbjct: 175 --IGSKSVSLVIGPEGGFEEDEIELLSDKGFV-PVSPIKGVLKAETAAL 220


>gi|302759931|ref|XP_002963388.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii]
 gi|300168656|gb|EFJ35259.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii]
          Length = 258

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 11/247 (4%)

Query: 3   IHSHLKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           + + L R + D  P    T  +  G ++ ++   LR+ +   + LFNG+ G   + +S V
Sbjct: 1   MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKALRLGQDQRVELFNGRGGIVTAAVSAV 60

Query: 62  GKSIRFKVEYQSRS------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
            +S    V  +          ++   +   F+ +K  R D+M++K  E+G   + P+ T 
Sbjct: 61  RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120

Query: 116 YTQNTHYNMD-RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            +     N   R +   ++A +QC  L    +     +  L      +  +     T G+
Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRESLNISSLKSQVSGSSHVSLL-ATAGA 179

Query: 175 ENSLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              +E  + +   I    +++GPEG +  EEK  L +   + P+ LG R LR +TAA+A 
Sbjct: 180 TEIVEVFNDSSKDIRGGTLIVGPEGDFTEEEKYDLVAAGAM-PVGLGHRRLRVETAAIAM 238

Query: 234 MALVQAI 240
           +A V  +
Sbjct: 239 LATVMMV 245


>gi|325679801|ref|ZP_08159372.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8]
 gi|324108471|gb|EGC02716.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8]
          Length = 241

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 21/231 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQ 79
           G    ++   LRM+ GD + +   G+D  ++ +I  +       ++    E Q   +T+ 
Sbjct: 20  GADAVHIGRSLRMRLGDELTVCCEGRD--YICRIDTISDEQCTLTVLSSGEGQGEPKTRL 77

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133
           +  Q +  P K ++LD ++QKSVE+G   I PV+T         ++     +R+    + 
Sbjct: 78  TLYQAV--P-KGDKLDTIVQKSVELGAAEIVPVLTARCVSRPDEKSFRKKRERLSRIALE 134

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           AA+QC    +P +    +L+   K    +   +   E  GS  S       A   ++ + 
Sbjct: 135 AAKQCGRSIVPEVGEMISLDECAKRLGRHETGLICYEKGGSPLS---ETVPADTGDIGVF 191

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           IG EGG+  EE E   +      + +G RILR +TA +AA+A++  + G+ 
Sbjct: 192 IGSEGGFDEEEVEKCRA-NGAKVIGMGSRILRCETAPLAAIAIIMNLTGNM 241


>gi|229260084|ref|YP_001118455.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
           vietnamiensis G4]
          Length = 255

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 46/267 (17%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD ++LF+G  G++ +++      
Sbjct: 8   AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R+   Q D    F P++                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEIDKRNALAQLDA---FEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            P      V+    +     +   R    ++ EQC    +P +       F    W    
Sbjct: 114 VPLTTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPEVA--AVRGF--GAWLDAL 169

Query: 164 QIVFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSEEKETLHSLPFVTPL 217
               AD       S       A +P+      V +LIGPEGG   +E+    +  F T L
Sbjct: 170 PAAPADGELRLLLSPRASIPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TAL 228

Query: 218 SLGPRILRSDTAAVAAMALVQAICGDW 244
           SLGPR+LR++TA  A +A + A  G W
Sbjct: 229 SLGPRVLRTETAGAAVLAALAARWGGW 255


>gi|220929216|ref|YP_002506125.1| hypothetical protein Ccel_1795 [Clostridium cellulolyticum H10]
 gi|219999544|gb|ACL76145.1| protein of unknown function DUF558 [Clostridium cellulolyticum H10]
          Length = 245

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAAEQCDILT 142
           K+++++ +IQK VE+G+  I PV+T          ++    + R +     AA+QC+   
Sbjct: 80  KSDKMELIIQKCVELGVWEIVPVMTERCVSRINTDKDAQNKLARWQKIAREAAKQCNRGI 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
           +P I+ P T +  ++        V     +   G +N + +   I    + +I+IGPEGG
Sbjct: 140 IPNIHYPITFKEAVEMASQAELSVIPYEKESAVGLKNVVARYQGIT---SGSIIIGPEGG 196

Query: 200 YHSEEKET-LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  EEKE  +     V  +SLGPRILR++TA + +++L+    GD
Sbjct: 197 F--EEKEVKMAEDRGVKKISLGPRILRTETAGMVSLSLMMYELGD 239


>gi|327440958|dbj|BAK17323.1| uncharacterized protein [Solibacillus silvestris StLB046]
          Length = 247

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 19/246 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD           SG+   +++ V+RM  G+ I++ +  +  ++ +I  + + +R
Sbjct: 1   MQRYFVDTVEKDMDHFIISGENARHISKVMRMTAGEEIIVVHD-NVAYVCEIIELDQDVR 59

Query: 67  FK---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
            K       S     Q D+       K ++L+ + QK+ E+GM A+      R ++    
Sbjct: 60  VKKTGTTIPSPEMPVQVDIACGLP--KGDKLELIAQKATELGMHALIPFAAERSIVKWDD 117

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CG 173
           +    N +R++  +  AAEQ     +P +  P + + L++ + +   +  ADE       
Sbjct: 118 KKAKKNQERLQKISQEAAEQSHRTYVPDVVQPISFKQLVQTFSNYDAVYIADEEDAKLAN 177

Query: 174 SENSLEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                +KL ++   + P +  + GPEGG    E          T +SLGPRILR++TA +
Sbjct: 178 RTTFKQKLQSLNKENTPRILCIFGPEGGISRHESAVFLEAGAQT-MSLGPRILRAETAPL 236

Query: 232 AAMALV 237
            A++ +
Sbjct: 237 YALSAI 242


>gi|159899629|ref|YP_001545876.1| 16S ribosomal RNA methyltransferase RsmE [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892668|gb|ABX05748.1| protein of unknown function DUF558 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 247

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 19/236 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
           +T   A  +  H   +VLR++ G +I L +G    ++++++ + K      E Q R   +
Sbjct: 17  ETLAVAERELLHQWNNVLRLRVGQHIALLDGLGMGYIAELTSLNKR-----EAQGRILQR 71

Query: 79  QS-------DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131
            +       +V    +  +  R +  +QK  E+G  A  P++   +Q       R R   
Sbjct: 72  YAANGEPSINVTLYLALTRGERFEIALQKCTELGATAFVPLLCERSQADVSATKRERWQR 131

Query: 132 I--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
           I   AAEQ     LP ++   T+   L        ++ A+   G   S +   A+     
Sbjct: 132 IIREAAEQAGRGRLPSLHEAQTVAQALP--QARGHLLLAE--TGQTLSFKAALALEPRQE 187

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           +AI  GPEGG+   E E       V+ +SLG RILR++TA +AA+A V      W+
Sbjct: 188 LAIWSGPEGGWSDNELEAARQAGLVS-VSLGSRILRAETAPIAALAAVMFQFDQWF 242


>gi|222151476|ref|YP_002560632.1| hypothetical protein MCCL_1229 [Macrococcus caseolyticus JCSC5402]
 gi|222120601|dbj|BAH17936.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 245

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F+D    I    + SG D  H++ +V+R + GD +++ N  +   + +I  +   I
Sbjct: 1   MQRYFLDVKSVINETYQISGKDDVHHIKNVMRQQTGDKVIV-NFTNATMICEIIDIQTEI 59

Query: 66  RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K +E           V      +K ++ ++MIQK+ E+G  +  P ++  T      +
Sbjct: 60  TVKPIEDIDILTEMPVSVTIASGLLKNDKYEWMIQKATELGATSFIPFVSERTIVKVDEK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGS- 174
                ++R       AAEQ     +P   F+     L   L+ +DH   ++  +ET  S 
Sbjct: 120 KFQKKVERFTKIVKEAAEQSYRQIVPSIEFVASGKALAKKLEAFDH--VLIAYEETAKSG 177

Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             +   E L  + H   V ++ GPEGG    E     S      + LGPRILR++TA + 
Sbjct: 178 EIKRFTEALQDVKHGDKVCVIFGPEGGLSEAEVAQFGS----KVIGLGPRILRAETAPLY 233

Query: 233 AMA 235
           A++
Sbjct: 234 ALS 236


>gi|225024619|ref|ZP_03713811.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC
           23834]
 gi|224942633|gb|EEG23842.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 113/221 (51%), Gaps = 17/221 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQYIFSPIKT 91
            VLR++ G  ++LF+G+     +++  +G+        +  +++++S   V  I +   +
Sbjct: 27  QVLRLQAGAPLVLFDGQGQAVAAELLEIGRKQAMARVDKLLTESRESPLAVTLIQAVSAS 86

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPF 145
            ++D+ +QK  E+G+  I P ++  +      +     + R +   ISA EQC    +P 
Sbjct: 87  EKMDFAVQKGTELGVKRIVPTVSMRSNVRLSGERAEKKVRRWQEIAISACEQCGRNEVPP 146

Query: 146 IYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           + P   L  +L     D   +++       S +    L ++  + +  +LIGPEGG  +E
Sbjct: 147 VAPIVDLAQVLAALPADSGARLLL------SPHGGVPLRSLPPVQSSVLLIGPEGGLTAE 200

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E++   S  F   + LG R+LR++TAA+AA+A +QA+ GD+
Sbjct: 201 EEDLARSYGFQA-VQLGARVLRTETAALAALAAMQALWGDF 240


>gi|296333298|ref|ZP_06875751.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675197|ref|YP_003866869.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149496|gb|EFG90392.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413441|gb|ADM38560.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 256

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           +G+  H++ +V+RM EGD I+  +    E   ++  V K     +  +   + ++  ++ 
Sbjct: 22  TGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDNVSCLVVEWTDENRELPIKV 81

Query: 84  YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI S + K ++L+++IQK  E+G        A R V+    +      +R       AAE
Sbjct: 82  YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWAKIAKEAAE 141

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIP---NVAI 192
           Q     +P +    + + LL+      + V A E    +  +    A+   +P   ++ I
Sbjct: 142 QSYRNEVPQVMDVHSFQQLLQRMQDFDKCVVAYEESSKKGEISAFSAVVRRLPKGSSLLI 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG    E E L     + P  LGPRILR++TA + A++ +
Sbjct: 202 VFGPEGGLTEAEVERLTEKDSM-PCGLGPRILRTETAPLYALSAI 245


>gi|293376255|ref|ZP_06622498.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909]
 gi|325845140|ref|ZP_08168449.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1]
 gi|292645147|gb|EFF63214.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909]
 gi|325488805|gb|EGC91205.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1]
          Length = 248

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           Q + + +  H++A V+RM+ G+ I++ N  K+  +L+  +     +  ++     S T+ 
Sbjct: 15  QVRITDEDAHHIARVMRMEVGERIIVCNEDKECYYLTITAVTPDEVTGEIGEAIESDTEL 74

Query: 80  S-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTI 132
             +V       K ++ +++IQK+ E G     PV      +    +     ++R      
Sbjct: 75  PIEVTIAQGLPKGDKFEWVIQKATECGATNFMPVSMERCVVKLDAKKEVKKVERWNKIAK 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIP 188
            AAEQ     +P ++   T +  L+   H    +FA E    +  L    + L  I    
Sbjct: 135 EAAEQSHRQVVPKVHSVHTFKAFLEQSKHYDVCLFAYEETAKQGELAQLKQTLENIKPGA 194

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L+GPEGG   +E + L    F  P +LGPRILR++TA + A++ +
Sbjct: 195 TLLLLVGPEGGVGEKEVDLLIQHGF-KPCALGPRILRTETAPIYALSAI 242


>gi|257068884|ref|YP_003155139.1| hypothetical protein Bfae_17280 [Brachybacterium faecium DSM 4810]
 gi|256559702|gb|ACU85549.1| conserved hypothetical protein TIGR00046 [Brachybacterium faecium
           DSM 4810]
          Length = 262

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 19/236 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDV 82
           G++  + A V R+  G+ +LL +    + L++++   K    +R  +E  + +  +   +
Sbjct: 28  GEEGRHAAKVARIGVGEQVLLTDAPGRQALAEVTVAKKEALELRL-LEDPTGAVQRLPRL 86

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             + +     R +  ++ + E+G   I P I R +      +       R +    +A +
Sbjct: 87  GLVQALATGGRDEQAVESATELGADRIVPWIARRSVSVWRGEKLRKGRSRWQATVRAAVK 146

Query: 137 QCDILTLPFIYPP-TTLEFLLKNWDHNCQ-----IVFADETCGSENSLEKLHAIAH--IP 188
           QC    +P + P  TT E L    +         ++   E+ G  +  E+L   +   + 
Sbjct: 147 QCRRPGIPAVDPAVTTTELLAALRERTAAGALVLVLHEQESVGLMSLAEQLRTASEDGLE 206

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +++GPEGG   EE   LH     + L LGP +LRS TA  AA+A++ A+ G W
Sbjct: 207 EILLVVGPEGGIAPEELTALHETGARSVL-LGPEVLRSSTAGPAALAVLSALVGRW 261


>gi|189347656|ref|YP_001944185.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium limicola DSM
           245]
 gi|189341803|gb|ACD91206.1| protein of unknown function DUF558 [Chlorobium limicola DSM 245]
          Length = 248

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ-SDVQY 84
           GD+YH+L  VLR K  + I + +G    +   I+ + KS+        R   +  + V  
Sbjct: 22  GDEYHHLVRVLRKKRNECIAVTDGTGTHFDVCITAIEKSVLSGTITAERPVARSATTVTV 81

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
             S +K   R +  ++K+ E+G+ A+ P+IT  T            + R +T  +SAA Q
Sbjct: 82  ALSLLKAPPRFELFLEKATELGVSAVIPMITARTVAQPSGDRIAKRLIRWKTIILSAARQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                LP I  P     ++    ++ +++  + +  + + +          N+  LIG E
Sbjct: 142 SGRYYLPDIIEPLPFGKVIGLSGYDRKLIPYERSPHTASDVRCTGG-----NLLFLIGGE 196

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           GG+ +EE        F T +S G  +LR++TA + A+++V+A
Sbjct: 197 GGFTAEEVLQARDAGF-TEISFGRSVLRAETAGIFAVSMVRA 237


>gi|238917092|ref|YP_002930609.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750]
 gi|238872452|gb|ACR72162.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750]
          Length = 245

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLR KEGD +L+ +G + ++   I+ +    IR  +  +     +      
Sbjct: 20  GSDVNHIKNVLRFKEGDKLLISSGDNVDYECSIASMSDEYIRADILSKDEQGKELPSRII 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ +IQK+VE+G  ++ PV  + +      +     ++R     +SAA+Q
Sbjct: 80  LFQGLPKADKMELIIQKAVELGAYSVVPVAMKRSVVKLDAKKAKAKVERWNGIALSAAKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVAILIGP 196
                 P +    T +  L+      +++   E   G E + + +  I H  +V I IGP
Sbjct: 140 SKRSIQPEVTEVMTFKQALEYAGKLDKLLLPYECAEGMEKTRKVIEEIGHGESVGIFIGP 199

Query: 197 EGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  SE  E +++   +  ++LG RILR++TA +  ++++
Sbjct: 200 EGGFDRSELDEAVNAGCEI--ITLGKRILRTETAGMMLLSVL 239


>gi|169334045|ref|ZP_02861238.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258762|gb|EDS72728.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM
           17244]
          Length = 249

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 110/214 (51%), Gaps = 13/214 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
            ++   LRMKEGDNI + +    ++  ++    ++++ K+  +  + T+ +    ++  +
Sbjct: 32  KHIIKSLRMKEGDNITICDKNGYDYECELIIDSENVQGKIISKKENDTEPNVKITLYQAL 91

Query: 90  -KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILT 142
            K+++ + ++QK+VE+G+  I P++T         ++    ++R       AA+Q     
Sbjct: 92  PKSDKFETIVQKTVELGIYEIVPIMTNRCISRPDKKSMKKKIERYNKIAFEAAKQSGRGI 151

Query: 143 LPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           +P +    T +  +K   D + +I+F +   G EN   K     ++ ++A ++G EGG+ 
Sbjct: 152 IPRVRDMITFKEAIKEIKDFDMKILFYEN--GGENL--KDFKYENLNDIAFIVGSEGGFD 207

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + E +       VT + LG RILR +TA +AA++
Sbjct: 208 ALEAKYAKENE-VTLMGLGKRILRCETAPIAALS 240


>gi|322507766|gb|ADX03220.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
          Length = 191

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVR-----TYTISAAEQCDILTL 143
           K +R+DY IQK+ E+G+  I+ + + R      Y+ D+ +        I+A EQC +  +
Sbjct: 37  KGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLNLV 96

Query: 144 PFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHI-PNVAILIGPEGGYH 201
           P +  P +L   L + D    + V A E        E+   +A I P +A+LIGPEGG  
Sbjct: 97  PEVLAPISLHEWLNSSDLPTSKFVLAPEK-------EQKDVLAGIQPELALLIGPEGGLS 149

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             E    +   F+    +G R+LR++TA V A++++
Sbjct: 150 ENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 184


>gi|268609141|ref|ZP_06142868.1| hypothetical protein RflaF_06546 [Ruminococcus flavefaciens FD-1]
          Length = 240

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 18/224 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFK-VEYQSRSQTKQSDV 82
           +G   +++   LRMK+G+ I +  NG D    +  S    S+    VE    +     +V
Sbjct: 17  TGSDANHIGRSLRMKKGEEITVCCNGIDYNC-TIASITADSVYLDLVEKHPCAAEPDINV 75

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               +  K ++L+Y+IQKSVE+G+  I PV+TR        ++    + R+      AA+
Sbjct: 76  TLFQAVPKLDKLEYIIQKSVELGVSRIVPVLTRRCISRPDEKDFAKKLPRLNKIAAEAAK 135

Query: 137 QCDILTLPFIYPPTTLE---FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           Q     +P + P  + +    +++  D N  I+  +E  G          +    +  I+
Sbjct: 136 QSGRGMIPEVTPVVSFKQSLAMMEELDRN--ILLYEEQGGRSFGEVDFEGVK---SAGII 190

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           IG EGG+  EE E + +   V  + LG RILR +TA + A++++
Sbjct: 191 IGSEGGFDQEEAEAMVNSGAVR-VWLGKRILRCETAPITALSIL 233


>gi|310779511|ref|YP_003967844.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926]
 gi|309748834|gb|ADO83496.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926]
          Length = 237

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 22/215 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD-------V 82
           ++L +V RMKEGD + + +G + E+   I  + K      E  +    K+SD       +
Sbjct: 25  NHLKNVFRMKEGDQLRVVDG-EYEYFCTIVILEKK-----EITAEINDKKSDEYSSKIRI 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDIL 141
                 +K +++D +IQK  E+G+  I P +T+ T         +  T +  A +QC  +
Sbjct: 79  DAALGILKNDKMDLVIQKLTEIGINKIIPTLTKRTIVKLKGKKSKWDTVSKEALKQCQGV 138

Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEG 198
            L  I  P  L E    ++D    +V     C     ++ +  ++   +  +  LIGPEG
Sbjct: 139 KLVEISEPLKLSEIEYSDYD----LVLLPYECAENTRIKDVLNNSEKTLKKILYLIGPEG 194

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           G+  EE   L        ++LG RILR++TAA+  
Sbjct: 195 GFSEEEVAYLQE-NNAKVITLGKRILRAETAAIVV 228


>gi|308069954|ref|YP_003871559.1| hypothetical protein PPE_03203 [Paenibacillus polymyxa E681]
 gi|305859233|gb|ADM71021.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 254

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+     ++     +G+   ++A V+R + GD I++ +G   E L  +  + +   
Sbjct: 1   MQRYFIPAEQFLEDHVIVAGEDARHIAKVMRGRSGDKIIVSDGVSREALVALDTIEQDHV 60

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                +    T +  VQ     S  K ++++ ++QK  E+G     P ++  T      +
Sbjct: 61  TATIIEPLKMTSEPYVQVTIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P I  P T + LL ++     I +  E    +   
Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEISAPMTWKELLASFAGYDLICYCYEKEQGKQLR 180

Query: 179 EKLHAIAH------IPNVAILIGPEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAV 231
           + +  +A       +P V +++GPEGG+   E E+L +         LG RILR++TA +
Sbjct: 181 DVIQPLAEQWASTDMPRVLLVVGPEGGFT--EAESLEAEQAGAQSTGLGRRILRAETAGM 238

Query: 232 AAMALV 237
           AA+A +
Sbjct: 239 AALACI 244


>gi|86130519|ref|ZP_01049119.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85819194|gb|EAQ40353.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 233

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 11/211 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQY 84
           D+  ++  VLR + GD I L NG +G   +   Y     + K+   S +  +  D  +  
Sbjct: 21  DESKHVIRVLRKQPGDTIYLTNG-NGYLFTAQVYDANPNKCKLSITSHTYQEPRDYKLHL 79

Query: 85  IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K N R ++ ++K+ E+G+  I P++  +++      +R      SA +Q     L
Sbjct: 80  AVAPTKLNDRFEWFLEKATEIGVTEITPLLCDHSERKVIKEERFLKILQSAMKQSLHYHL 139

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P + P T  +  + N   N  I   ++   S    E    ++   +  ILIGPEG + + 
Sbjct: 140 PKLNPLTPFKDFITNAHSNTFIAHCEDDTKSLLKSE----LSPATDCTILIGPEGDFSTT 195

Query: 204 E-KETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E ++ L     +TP+SLG   LR++TAA+ A
Sbjct: 196 EIQQALQK--NITPVSLGHSRLRTETAAIVA 224


>gi|256828472|ref|YP_003157200.1| hypothetical protein Dbac_0661 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577648|gb|ACU88784.1| protein of unknown function DUF558 [Desulfomicrobium baculatum DSM
           4028]
          Length = 244

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 26/224 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW-------LSKISYVGKSIRFKVEYQSRSQTK 78
           G+++H+L  VLR K G+++ LF+G+ G W       LSK     KS   +   +  +   
Sbjct: 22  GEEFHHLTRVLRAKAGESVRLFDGR-GRWGIFCIRDLSK-----KSASLQRLSEQTAPAP 75

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYTISAAE 136
              +       K  R  ++++K+VE+G   +       +Q        D       +AA+
Sbjct: 76  ACPLILAVGWSKGLRRGFLLEKAVELGAAEVWLWQAARSQGEVPQEGKDGWERQLTAAAK 135

Query: 137 QCDILTLP----FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           QC    LP    F  P   +   +   D   +++  ++    EN       +AH      
Sbjct: 136 QCGASRLPQIRTFAGPADVISAAV---DLGSKVLCWEQ---EENGFVDPTLLAHRRGSIA 189

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           ++GPEGG   +E +      F  P+ LGP ILR +TAAV  ++L
Sbjct: 190 VLGPEGGLERKEADLFREHGF-APVGLGPNILRFETAAVLVLSL 232


>gi|126642376|ref|YP_001085360.1| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978]
          Length = 157

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVR-----TYTISAAEQCDILTL 143
           K +R+DY IQK+ E+G+  I+ + + R      Y+ D+ +        I+A EQC +  +
Sbjct: 3   KGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLNLV 62

Query: 144 PFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHI-PNVAILIGPEGGYH 201
           P +  P +L   L + D    + V A E        E+   +A I P +A+LIGPEGG  
Sbjct: 63  PEVLAPISLHEWLNSSDLPVSKFVLAPEK-------EQKDVLAGIQPELALLIGPEGGLS 115

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             E    +   F+    +G R+LR++TA V A++++
Sbjct: 116 DNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 150


>gi|283781126|ref|YP_003371881.1| hypothetical protein Psta_3357 [Pirellula staleyi DSM 6068]
 gi|283439579|gb|ADB18021.1| protein of unknown function DUF558 [Pirellula staleyi DSM 6068]
          Length = 236

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R FVD PL        +GD+  +L  V+R K GD ++LF+G   E  + I    K  +  
Sbjct: 4   RYFVDKPLAAGI-AIIAGDEARHLVGVMRAKLGDEVVLFDGCGHEADATIEKTAKERVEL 62

Query: 68  KVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNM 124
           +VE  +   +   S +    +  K +R  ++++K VE+G  A+ P+ T     Q     +
Sbjct: 63  RVETVRDVPREFASQLTLAVALPKGDRQKWLVEKLVELGCDALLPLETDRGVAQPVESAI 122

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R++   + A++Q     L  I  P + + L      + Q  F     G   SL++    
Sbjct: 123 ERLKRGVLEASKQSGRALLMRIEAPASSDTLFSAATVHNQPCFIAHPGGC--SLDQAWDQ 180

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +   N    IGPEGG+   E +      F   +SLGP ILR +T
Sbjct: 181 SS-GNALFAIGPEGGFSDREVQLAEQAGF-QKVSLGPTILRIET 222


>gi|52424293|ref|YP_087430.1| hypothetical protein MS0238 [Mannheimia succiniciproducens MBEL55E]
 gi|52306345|gb|AAU36845.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 243

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 43/244 (17%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           + + +  +++  VLRM+ G+ + LF+G +  + + I    K          +   ++S +
Sbjct: 19  RLTDEAANHVGRVLRMQAGERLELFDGSNHVYTAVILQADKKSVTAEIRDCQLDDRESHL 78

Query: 83  QYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYT 131
           +     +  +  R+++ +QKSVE+G+  I P+   +++     +D  R            
Sbjct: 79  KIHLGQVISRGERMEFTVQKSVELGVNVITPL---WSERCGVKLDAERMDKKIQQWQKIA 135

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAI 184
           ++A EQC    +P I P   L+    +W            C  ++ + KL       ++I
Sbjct: 136 VAACEQCGRNIVPEIRPMMKLQ----DW------------CAEQDGMLKLNLHPRAKYSI 179

Query: 185 AHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             +P+     V +LIG EGG   +E        F T + LG R+LR++TA++ A+  +Q 
Sbjct: 180 QTLPDIPAEGVRLLIGSEGGLSPQEIAQTERQGF-TEVLLGKRVLRTETASLVAITALQL 238

Query: 240 ICGD 243
             GD
Sbjct: 239 CFGD 242


>gi|79319632|ref|NP_001031165.1| methyltransferase [Arabidopsis thaliana]
 gi|49660073|gb|AAT68327.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
 gi|332194385|gb|AEE32506.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
           thaliana]
          Length = 210

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR---SQTK 78
           +  G ++ ++A VLR+K+ D + LFNGK G     I  + K+ + F  +   +    Q  
Sbjct: 70  RVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGM 129

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
           Q  V   F  +K  R D++I+K  E+G  ++ P++T  +     N +DR+   + +AA+Q
Sbjct: 130 QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 189

Query: 138 CDILTLPFIYPPTTLEFLLKNWDH 161
           C  L    + PP     LL   DH
Sbjct: 190 CQRLHQMVLNPPIKFGTLL---DH 210


>gi|253574632|ref|ZP_04851972.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845678|gb|EES73686.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 267

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 17/252 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R FVD       +   +G+   ++  V+R K GD +++ +G   E L++I+ +   + 
Sbjct: 14  MQRYFVDPAQFGDREVTIAGEDARHIGRVMRSKPGDKLIVSDGISREVLAEITIIEPQQV 73

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E  + S      V    S  K ++++ +IQK  E+G  +  P ++  T      +
Sbjct: 74  TAAIIEELAASGEPWFQVTVAQSLPKGDKMETVIQKCTEIGAASFLPFLSERTIVQYDSK 133

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSE 175
                + R +     AAEQ     +P +  P   + LL   KN+D  C + +  E     
Sbjct: 134 KEEKRLTRWQKIAKEAAEQAHRSKIPAVELPVKWDKLLVELKNYDLVC-LCYEKEDGRQL 192

Query: 176 NSLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             + K       P     VA+++GPEGG+   E E   +   V+ + LG RILR++TAA+
Sbjct: 193 RDVLKPFVTGLTPERTVKVAVVVGPEGGFTEAEVEEAEAAGAVS-VGLGRRILRTETAAM 251

Query: 232 AAMALVQAICGD 243
           AA+  +    G+
Sbjct: 252 AALTCIMYESGE 263


>gi|323445090|gb|EGB01887.1| hypothetical protein AURANDRAFT_35679 [Aureococcus anophagefferens]
          Length = 188

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSD 81
           S  Q+ Y+A V+R++EGD +  F    GEW   +      G ++   V+ +     +   
Sbjct: 48  SPAQHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDETPR 107

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQCD 139
           +   F+P++  R   +I+K+VE+G   + PV T   +          +    + AAEQC+
Sbjct: 108 LDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQCE 167

Query: 140 ILTLPFI 146
            L +P +
Sbjct: 168 RLRVPVV 174


>gi|171320065|ref|ZP_02909134.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5]
 gi|171094694|gb|EDT39739.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5]
          Length = 262

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 21/227 (9%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           A VLR++ GD + LF+G  G++ +++  + K  R  +      +  +++  Y  +  +  
Sbjct: 42  AQVLRLQPGDTLALFDGSGGQYRARLVEIDK--RNALAQIEAFEPAEAEPPYRVTLAQGI 99

Query: 92  ---NRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +++D++I+K+VE+G+ A+ P      V+    +     +   R    ++ EQC    
Sbjct: 100 AGGDKMDWVIEKAVELGVAAVVPLSTVRGVVKLSGERADKRVAHWRGVVRASCEQCGRNR 159

Query: 143 LPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           +P + P       L +      D   +++ +        SL           V +LIGPE
Sbjct: 160 VPDVAPVRGFGAWLDSLPPAPADGELRLLLSPRASIPFVSLPDAPPATA---VTLLIGPE 216

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG   +E+    +  F T LSLGPR+LR++TA  A +A + A  G W
Sbjct: 217 GGLSPDEENAARAHGF-TALSLGPRVLRTETAGAAVLAALAARWGGW 262


>gi|313674581|ref|YP_004052577.1| hypothetical protein Ftrac_0464 [Marivirga tractuosa DSM 4126]
 gi|312941279|gb|ADR20469.1| protein of unknown function DUF558 [Marivirga tractuosa DSM 4126]
          Length = 231

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85
           D+  +   VLR ++GD + + +GK   + +KI+    K  RF++   ++ +         
Sbjct: 18  DESKHCIKVLRKQQGDELDIIDGKGTFYKAKITDASAKKCRFEIISTTQERKVAFHRHLA 77

Query: 86  FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K  ++++++++K+ EMG+  I    + +++     ++R+    ISA +Q      P
Sbjct: 78  IAPTKNMDKMEWLVEKATEMGIDEISFFQSFHSERKVIKIERLEKKAISAMKQSLKAKKP 137

Query: 145 FIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
            +      +  LK  D  N  I + D     +N +   + ++H  +  +LIGPEG +  E
Sbjct: 138 LLNEIIPYKQFLKETDVSNKLIAYVD----FKNKIHMKNELSHQQDTLVLIGPEGDFTPE 193

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E  +L        +SLG   LR++TAA+AA+ L+
Sbjct: 194 EV-SLAIENRYKKVSLGNSRLRTETAALAAVHLM 226


>gi|156742110|ref|YP_001432239.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus castenholzii
           DSM 13941]
 gi|156233438|gb|ABU58221.1| protein of unknown function DUF558 [Roseiflexus castenholzii DSM
           13941]
          Length = 257

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 25/243 (10%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQY--HYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           + S+  R FVD P    T+     D    H LA+VLR+  G+ ++L +G+  ++   +  
Sbjct: 9   VQSNTYRFFVD-PAAFDTERVRLFDPELGHQLANVLRLGRGERVVLLDGEGWQYTVMLET 67

Query: 61  VGK--SIRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
           V +  ++   +E +  +  +      ++ P I+  R ++ +QK VE+G+ A  P +   +
Sbjct: 68  VDRRGTVNGVIESREVAGGEPRLALTVYLPLIRAERFEWALQKGVELGVAAFVPTVCARS 127

Query: 118 QNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-----EFLLKNWDHNCQIVF-- 167
            +       + R R     AAEQ     LP + P  T      +F L    H+  ++   
Sbjct: 128 IDAAPDERRLARWRRIIREAAEQSRRGRLPRLAPSLTFNEACTQFTL----HSPALLLWE 183

Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE--TLHSLPFVTPLSLGPRILR 225
            D       +L  L        + I  GPEGG  ++E++    H +  V   SLGPR LR
Sbjct: 184 GDNATPLAGALHALRRDTSPAALGIFSGPEGGLTNDERQWAERHGIMIV---SLGPRTLR 240

Query: 226 SDT 228
           ++T
Sbjct: 241 AET 243


>gi|160880435|ref|YP_001559403.1| hypothetical protein Cphy_2303 [Clostridium phytofermentans ISDg]
 gi|160429101|gb|ABX42664.1| protein of unknown function DUF558 [Clostridium phytofermentans
           ISDg]
          Length = 246

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 120/242 (49%), Gaps = 17/242 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++R +++      T  +  G   +++ +VLRMK G+ ++  +G+  ++   I+   K +I
Sbjct: 1   MQRFYIESTNISDTTIRIEGADVNHIKNVLRMKIGEKLIACDGQGIDYCCIIAEFEKDNI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
              +  + ++ T+      +F  + K ++++ ++QK+VE+G   I PV+ + T       
Sbjct: 61  ILSISERKKTDTELPAKLILFQGLPKKDKMELIVQKAVELGAYEIVPVMMKRTIVKLEDK 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R +     AA+Q     +P ++   + +  +K     C +      C S   
Sbjct: 121 KKEQKKLERWQAIAEGAAKQSGRGFIPRVHEIVSYQEAIK-MASECDLSILPYECAS--G 177

Query: 178 LEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           + +  A+ +      ++ I+IGPEGG+ +E++  L     + P++LG RILR++TA +  
Sbjct: 178 INETRALINQSKGKDSIGIMIGPEGGF-AEDEVDLAKEHGIIPVTLGKRILRTETAGLTI 236

Query: 234 MA 235
           ++
Sbjct: 237 LS 238


>gi|89891576|ref|ZP_01203080.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
 gi|89516123|gb|EAS18786.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
          Length = 234

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN- 92
           VLR   GD I + +G+   +   I+++        + +     T    +    +P K N 
Sbjct: 29  VLRKNIGDIINITDGRGNLYHGTINHITSNRCDLDIAFAEAYPTHDYYLHIAIAPTKMND 88

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL 152
           R+++ ++K+ EMG+  I P+++++++    N+DR     +SA +Q      P +   T  
Sbjct: 89  RMEWFLEKATEMGISRITPILSQHSERQKINLDRFNRIIVSAMKQSLQFHKPELDALTNF 148

Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212
           E  + N  +      A    G +N L+ L  I    +  +LIGPEG +  +E E      
Sbjct: 149 EDFI-NAKNVSDKFIAHCEDGDKNHLKNL--IHKGNSTTVLIGPEGDFTPQEIEMALKND 205

Query: 213 FVTPLSLGPRILRSDTAAVAAMALVQ 238
           F  P+SLG   LR++TA V   A + 
Sbjct: 206 F-KPVSLGSTRLRTETAGVYTAATLN 230


>gi|134267587|gb|ABO67782.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 229

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 15/213 (7%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-YIFSPI-KTNR 93
           +RMK GD I          + +I  +          Q + + ++  V+ YI   + K  +
Sbjct: 1   MRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRIYIAQGLPKGEK 60

Query: 94  LDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            + +IQK  E+G        A R V+    +     ++R +     AAEQ +   LP + 
Sbjct: 61  WELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAEQAERTLLPIVR 120

Query: 148 PPTTLEFLLKNWDHNCQIVFADET---CGSENSLEKLHAIAHIPNVAIL--IGPEGGYHS 202
            P +L+ L+   +     +FA E     G   SL  L A    P  ++L   GPEGG+  
Sbjct: 121 APLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQ-PGSSLLAVFGPEGGFSR 179

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EE E L    F+ P SLGPRILR++TA +  +A
Sbjct: 180 EEAEQLKQSGFL-PCSLGPRILRTETAPLYLLA 211


>gi|87125782|ref|ZP_01081625.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917]
 gi|86166591|gb|EAQ67855.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917]
          Length = 248

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 18/243 (7%)

Query: 5   SHLKRLFVD---FPLCIKTQGKASGDQY--HYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           + L+RL +       C+ +  + + ++   HYL  VLR++ GD + + +G+ G W + + 
Sbjct: 2   AELRRLLIQRSRLEPCLNSDRRLALNEREGHYLRRVLRLRPGDAVAVVDGEGGLWTAGLC 61

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR--LDYMIQKSVEMGMGAIRPVITRY- 116
              +     ++  + S    +    +   +   R  +D +++ + E+G+  I+P+ + + 
Sbjct: 62  SPAE---LALDPMAASDPAPAPSPLLGLAVVGVRRGMDELMRMACELGVDRIQPLRSNWR 118

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           T        R +     A EQC+ L  P + P   ++        +     A        
Sbjct: 119 TVQAEERPQRWQLILDEAVEQCERLWQPSLLPCRHVDDWWGELSSDAVKALATTRRDGLP 178

Query: 177 SLEKLHAIAHIPNVA----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           SL++   +   P+ A    + IGPE G+ ++E+    +  + TP+S GP ILR+ TAAV+
Sbjct: 179 SLQQW--LNQQPDQAGMVWVAIGPEAGWTADEERAAEAKGW-TPVSCGPSILRTSTAAVS 235

Query: 233 AMA 235
           A+A
Sbjct: 236 AVA 238


>gi|168334726|ref|ZP_02692858.1| hypothetical protein Epulo_06900 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 256

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 26/225 (11%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEW---LSKIS--YVGKSIRFKVEYQSRSQTKQSDVQ 83
           +H++ +V+R K GD +L+ + ++G +   +++IS  ++  +I   VE  +       D+ 
Sbjct: 34  FHHIKNVMRAKIGDQLLVGDKENGMYKCFVAEISANFITANI---VEVFAADTEPAVDI- 89

Query: 84  YIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRY-------TQNTHYNMDRVRTYTISAA 135
            +F+P IK ++++++IQK+VE+G+  I P+ T++        +     ++R      SAA
Sbjct: 90  VLFAPLIKGDKMEWVIQKAVEIGIAKIIPIYTQHCVVKLESEKKIASKVERWNKIAESAA 149

Query: 136 EQCDI-LTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           +Q    +T+    P      +EF     D        ++T     + +K+       ++ 
Sbjct: 150 KQSGRGITVAVAEPMKFADAMEFADAALDAIAIPYEKEDT----QTFKKMLRENQFTSLG 205

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           I +GPEGG+ +EE         +  ++LG RILRS+TA++ A AL
Sbjct: 206 IFVGPEGGFAAEEIAIAEKFGAMV-VTLGKRILRSETASIVATAL 249


>gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit methyltransferase E [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952950|gb|AEA26647.1| Ribosomal RNA small subunit methyltransferase E [Pseudonocardia
           dioxanivorans CB1190]
          Length = 248

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 20/231 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  + A V R++ G+ I L +G+ G   + +  VG+  R  V    R++ +    +  
Sbjct: 22  GPEGRHAATVRRLRPGEEITLADGRGGLARAVVDTVGRD-RLDVRVLDRAELEPPTPRVT 80

Query: 86  FSP--IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN--MDRVRTYTISAAE 136
            +   +K  R +  ++ + E G+ AI P      + R+      +  + R R    SAA+
Sbjct: 81  LAQALVKGERGELAVELATEAGVDAILPWRAARCVVRWEDGARGDRALARWRATVRSAAK 140

Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           Q     +P +  P +   L  L   +D    ++    T G  + L    A      V ++
Sbjct: 141 QARRAWVPEVGAPVSTRELAALCPTFDRAL-VLHESATEGLASGLSGAPA-----EVLLV 194

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG   EE   L +      + LGP +LR+ TAA  A+  + A+   W
Sbjct: 195 VGPEGGVADEEIAMLTAA-GARAVRLGPEVLRASTAAAVALGAIGALTSRW 244


>gi|40889937|pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein
 gi|40889938|pdb|1VHK|B Chain B, Crystal Structure Of An Hypothetical Protein
 gi|40889939|pdb|1VHK|C Chain C, Crystal Structure Of An Hypothetical Protein
 gi|40889940|pdb|1VHK|D Chain D, Crystal Structure Of An Hypothetical Protein
          Length = 268

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 13/225 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           +G++ H++ +V R  EGD I+  +    E   ++  V K     +  +  ++ ++  ++ 
Sbjct: 24  TGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIKV 83

Query: 84  YIFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI S + K ++L+++IQK  E+G        A R V+    +      +R       AAE
Sbjct: 84  YIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAE 143

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-AHIP---NVAI 192
           Q     +P +    + + LL+      + V A E    +  +    AI + +P   ++ I
Sbjct: 144 QSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLI 203

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG    E E L     VT   LGPRILR++TA + A++ +
Sbjct: 204 VFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPLYALSAI 247


>gi|210610069|ref|ZP_03288248.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787]
 gi|210152680|gb|EEA83686.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787]
          Length = 245

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 112/223 (50%), Gaps = 12/223 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83
            G   +++ +VLRMK G+ + + +G + ++L +I S   + +  ++  + +  T+     
Sbjct: 19  EGLDVNHIKNVLRMKVGEALKVSDGNNRKYLCEIESMTAQQVCVRIVEEQQVDTELPSKI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K+++++ ++QK+VE+G   I PV T+        +     ++R R    S A+
Sbjct: 79  YLFQGLPKSDKMELIVQKAVELGAYEIIPVATKRAVVKLDEKKALKKVERWRGIAESGAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILI 194
           Q     +P +    + +  L  +     I+    +   G + + + +  I    +V I I
Sbjct: 139 QSGRNVIPKVTNVMSYKDAL-TYARGLDILLIPYELAEGMKETKQVIEEIKRGQSVGIFI 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+ ++E E   +      ++LG RILR++TA +  ++++
Sbjct: 198 GPEGGFETQEVEDAIA-NGARAITLGKRILRTETAGLTTLSIL 239


>gi|15806531|ref|NP_295243.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus radiodurans
           R1]
 gi|6459283|gb|AAF11086.1|AE001996_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 242

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 17/222 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQSRSQTKQS 80
           G Q     HVLR++ G+ + +F+G+ GE ++ +S +        +       SR      
Sbjct: 27  GPQETRHLHVLRLRPGERVQVFDGRGGEAVAVLSELDAGHALLHLDPAAAAHSRGAEYPQ 86

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ 137
            V    + +K ++L  +++ + E+G   I+ +IT + +        + R+R     AA Q
Sbjct: 87  PVTLAIALLKGDKLADVVRAATELGAARIQLLITAHAEARDIGAQKLVRLRRIAGEAARQ 146

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
            +   +P +  P  L  L   W+   Q++ A    GS+  L  L  +     + +L GPE
Sbjct: 147 SERRIVPDVLEPVPLTKL--TWE--GQLLTAH--PGSQERLTDL--LTWDAPLTVLSGPE 198

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           GG  + E E L +      ++LGPRILR++TA +A +  + A
Sbjct: 199 GGLSTAEVEHL-TRQGARLITLGPRILRAETAPLALLGAMAA 239


>gi|317133522|ref|YP_004092836.1| protein of unknown function DUF558 [Ethanoligenens harbinense
           YUAN-3]
 gi|315471501|gb|ADU28105.1| protein of unknown function DUF558 [Ethanoligenens harbinense
           YUAN-3]
          Length = 239

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 13/233 (5%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQT 77
           +T G  +G    ++A VLRM+ GD + + +    ++L +I S    ++  +V  +  +  
Sbjct: 11  ETHGCITGADAAHIARVLRMRPGDKLTVCDLAGSDYLCEILSAAPDAVELRVLEKRPTIA 70

Query: 78  KQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNT-HYNMDRVRTY 130
           + S    +F  + K ++++ ++QKSVE+G+  + PV+T     R  + T      R +  
Sbjct: 71  EPSVHVTLFQGLPKADKMELIVQKSVELGVSRVVPVLTARCVSRPDRATLAKKTARWQKI 130

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
              AA+Q     LP +          +      + V   E  G  +    L     +  +
Sbjct: 131 AAEAAKQSGRGRLPVVGEAVDFSAAARELAGMERGVLFYEKGGDAH----LGVWNGVREI 186

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            + IGPEGG+  EE      L  V   +LGPRILR++TA +  ++++    G+
Sbjct: 187 GVCIGPEGGFADEEVALAGEL-GVRVCTLGPRILRTETAPLCVLSVIMYATGN 238


>gi|260438505|ref|ZP_05792321.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM
           2876]
 gi|292809094|gb|EFF68299.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM
           2876]
          Length = 247

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK+ D +++  G + ++L  I  +    I   +   + +  +     +
Sbjct: 20  GLDVNHIKNVLRMKKDDELMVSGGNNTDYLCSIKEFTDDEIYLSIISANEADRELPCRIH 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
           +F  + K ++++ +IQK VE+G+  I PV  + +      +     + R +  + SAA+Q
Sbjct: 80  LFQGLPKGDKMEMIIQKCVELGVNEIIPVAMKRSVVRLDDKKAKSKVARWQLISESAAKQ 139

Query: 138 CDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
                +P I+   +  E +    D + +++  +   G + + E L  +    +VA+ IGP
Sbjct: 140 SGRTIIPCIHEVMSFKEAVNYAKDMDVKLIPYELCEGMKATKEALSGLKSGMDVAVFIGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG   EE E    L  + P+SLG RILR++TA +A MA++
Sbjct: 200 EGGLEVEEVEKAKELGII-PISLGKRILRTETAGLAIMAII 239


>gi|91202795|emb|CAJ72434.1| similar to RNA methyltransferase YggJ [Candidatus Kuenenia
           stuttgartiensis]
          Length = 244

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 17/243 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           H  R F+   + I ++    G + H++ HV R K+G+ I LF+GK  E+ + +    ++ 
Sbjct: 2   HQDRFFIP-NVSIDSEIWIEGKEAHHILHVKRAKQGNKITLFDGKGIEYKAVVVETQRA- 59

Query: 66  RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT 117
           R KV  +S     +     +    S  K    D +IQK  E+G+  + P+     +    
Sbjct: 60  RLKVFIESSLVVDREPNVSITIAVSIPKGKFSDILIQKCSELGIHTLTPLHCERSVVAIK 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           + +    +R     I +++QC    L  I     +E  LK     C    +   C   ++
Sbjct: 120 ETSAEKRERWNKIVIESSKQCKRNILTEITTGVAIEDFLKTL---CDYDLSLMPCLRRHA 176

Query: 178 LEKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +     +   P+   +  LIGPEGG+   E E       + P++LG   LR +TAA+A  
Sbjct: 177 MSLKAVLRERPSAKKIVCLIGPEGGFTDNEIERAVEKGCI-PVTLGSSTLRIETAAIAVS 235

Query: 235 ALV 237
           +++
Sbjct: 236 SML 238


>gi|269797946|ref|YP_003311846.1| hypothetical protein Vpar_0885 [Veillonella parvula DSM 2008]
 gi|269094575|gb|ACZ24566.1| protein of unknown function DUF558 [Veillonella parvula DSM 2008]
          Length = 243

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R  M++   +   + + G +       GK+
Sbjct: 1   MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGIYQITAEVDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               +EY   +      +  + S +K  +L++++QK+ E+ +  I  V     + +Y + 
Sbjct: 59  QAKLIEYVEENVASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTVNCVAKYDEK 117

Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R     + AA+QC    LP +    TL   L       ++V  +   G   ++
Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRKHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235
            L+ LH+   + +V I IGPEGGY  +EKE    + +    +SLG  ILR++TAA+ ++A
Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 235

Query: 236 LVQ 238
           ++Q
Sbjct: 236 MIQ 238


>gi|90961798|ref|YP_535714.1| hypothetical protein LSL_0821 [Lactobacillus salivarius UCC118]
 gi|90820992|gb|ABD99631.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
          Length = 243

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62
           ++R F D    I T+ + + + Y +   VLRMK GD   L +  D E + K+       G
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDTFELVD--DAEVVHKMEITKIEDG 56

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           K+    VE         +DV  +    K ++ D+++QK  EMG       +  Y+     
Sbjct: 57  KAKATSVEVIPSDVELPADVTIVCGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWD 116

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173
            + +   + R++    SAAEQ     +P +    T    LK+ D   ++ +IV  +E+  
Sbjct: 117 KKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172

Query: 174 SENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              S      +   P+  I I GPEGG   +E E L +  F+    LGPRI+R++TA + 
Sbjct: 173 KGESGNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231

Query: 233 AMA 235
            +A
Sbjct: 232 FLA 234


>gi|313888909|ref|ZP_07822569.1| RNA methyltransferase, RsmE family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845082|gb|EFR32483.1| RNA methyltransferase, RsmE family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 229

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 17/209 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           H+L +V+R+K+G+ +     +DG  +   +Y G+ I+   E    +++K   +   F  +
Sbjct: 22  HHLKNVIRIKDGE-VFQVVFEDG--IFSFAYEGEKIKNLGEVLESNESKVR-LSLFFGIL 77

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVI-----TRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
           K N+ + +++ + E+G+    PVI     +  ++     ++R +    SAA+Q     +P
Sbjct: 78  KNNKSEDVLRHATEIGVSDFYPVIMDRSISDISKKKEKKLERFQKIVESAAKQSKRDVIP 137

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            ++     + +L N+  +  + + DE       + K    A   N+ ++IGPEGG    E
Sbjct: 138 IVHDIIKTDDIL-NFSGDLVLCYEDENKTQLGDITK----ALSNNIGLVIGPEGGISERE 192

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            E L        + LG RILR++TAA+ A
Sbjct: 193 LELLSE---AKKVGLGRRILRAETAAITA 218


>gi|312129649|ref|YP_003996989.1| hypothetical protein Lbys_0890 [Leadbetterella byssophila DSM
           17132]
 gi|311906195|gb|ADQ16636.1| protein of unknown function DUF558 [Leadbetterella byssophila DSM
           17132]
          Length = 234

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 16/212 (7%)

Query: 35  VLRMKEGDNILLFNGKDGEWL--SKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKT 91
           VLR K GD I + +GK G W   S +    KS + ++ E     +  Q ++    SP K 
Sbjct: 31  VLRKKAGDIIQVTDGKGG-WFTCSIVDAHPKSCKLQILESTFEYEKPQREIYVAISPTKN 89

Query: 92  -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
            +R++Y ++KS+E+G+  I PV T +T   + N +R +   ISA +Q     LP IYP  
Sbjct: 90  GDRIEYFLEKSIEIGISGIIPVKTTHTYPKNINAERWKKIAISAMKQSLKAYLPEIYPYL 149

Query: 151 TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKET 207
           +++  L           A  + G+E+       I  +P    V I IGPEG +  EE   
Sbjct: 150 SVKDFLTLSKPFPTKFLAHLSEGAED-------IIRVPLSDKVLIWIGPEGDFTEEEINL 202

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             S  F   ++LG   LR++TA V A++++ A
Sbjct: 203 ATSSDFQN-VTLGKSRLRTETAGVFAVSILNA 233


>gi|322383638|ref|ZP_08057389.1| 16S ribosomal RNA methyltransferase RsmE-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151850|gb|EFX44793.1| 16S ribosomal RNA methyltransferase RsmE-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 255

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 111/249 (44%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+       T  +  GD  H+L  V+R + G+ I++ +G   E L++I+ V K++ 
Sbjct: 1   MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R  T +  +Q     S  K ++++ +IQK  E+G     P ++  T      +
Sbjct: 61  TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R +     AAEQ     +P +    + + +L   +   ++  A      E+SL
Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVVEGVHSWKQIL---EQAARMDAAWICYEKEDSL 177

Query: 179 EKLHAIAHIP----------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +   A+               + +++GPEGG+  +E E       ++ + LG RILR++T
Sbjct: 178 QIRDALFQADALKRNDDKPVRIMLIVGPEGGFTEKEIEQAEESGCLS-IGLGTRILRTET 236

Query: 229 AAVAAMALV 237
           AA+  +  +
Sbjct: 237 AAMVGLTCI 245


>gi|298373262|ref|ZP_06983251.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274314|gb|EFI15866.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 232

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-----SYVGKSIRFKV 69
           P  ++T      + YH    VLRM+EGD + + +GK   + ++I      +   +IR   
Sbjct: 7   PNVLETNALTEEESYH-CTKVLRMREGDVVQVTDGKGNMYEAEIVLPDTVHTMLAIR--- 62

Query: 70  EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
              S    ++  +    +P K  +R +++++K+VE+G+  I P++ ++++      +R+ 
Sbjct: 63  SVMSDFGKRRYRLHLAVAPTKNIDRFEWLVEKAVEIGVDRITPLLCQHSERRTVKTERLE 122

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              ++AA+Q     +P I P T    +  + D   + V        EN  +   A     
Sbjct: 123 KIALAAAKQSLKAYIPKIDPITHFAEITAHSDDEQRFVAHCYDMPKENLFD---ACRPRQ 179

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +  +LIGPEG + +EE E   +  F + +SL    LR++TA + A
Sbjct: 180 STVVLIGPEGDFSTEEVELALTAGFRS-VSLSDSRLRTETAGIVA 223


>gi|332827614|gb|EGK00356.1| hypothetical protein HMPREF9455_03309 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 233

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIKT- 91
           VLR KEGD ILL +GK   + ++I             ++  Q K    ++Q  F+P K  
Sbjct: 28  VLRKKEGDEILLTDGKGFFYDAEIMQANPKHCMVNILKTIEQPKGWNFNLQIAFAPTKNI 87

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
           +R+++  +K+ E+G+  + P++ R+++       R+    +SA +Q     LP +    +
Sbjct: 88  DRIEWFAEKATEIGIDRLSPILCRHSERKEIKAQRIEKILVSAMKQSQKALLPQLDEMQS 147

Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
               +K  + + Q   A   C  +  +          N  ILIGPEG +  EE +     
Sbjct: 148 FPAFIKQ-EFDGQKFIAH--CYPQEKVLLKDIYKKGGNALILIGPEGDFSEEEVKMAIDH 204

Query: 212 PFVTPLSLGPRILRSDTAAVAA 233
            F + +SLG   LR++TAA+ A
Sbjct: 205 GFKS-ISLGDSRLRTETAALVA 225


>gi|95929633|ref|ZP_01312375.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134330|gb|EAT15987.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
          Length = 254

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 14/162 (8%)

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPF 145
            R + ++QK  E+G+  I P ++R++              R     + A  QC    LP 
Sbjct: 97  ERFELVLQKMTEIGVTRIVPFVSRHSTTVEQRDAGQKKSHRWPDVLLRAGRQCRRAQLPE 156

Query: 146 IYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +      E +L    +WD   +++ +++   +  S  +    A    +A+++GPEGG+  
Sbjct: 157 LMEVVDFETMLDALADWD--VKLLLSEKN--TAWSFREGIGTAKPDRIAVIVGPEGGFAD 212

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EE  TL     V P+S+G RILR++TAA+ A  L Q   GD+
Sbjct: 213 EEI-TLAQSRGVVPVSVGRRILRTETAAIVAATLAQFCVGDY 253


>gi|218296339|ref|ZP_03497082.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23]
 gi|218243133|gb|EED09664.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23]
          Length = 228

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 16/221 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++  +L  VLR   GD   +F+ +  E L+++  +G  +R+++  + R   ++  V+ + 
Sbjct: 18  EEGRHLVEVLRAGVGDRFTVFD-ESREALAEVVDLGPPVRYRI-LEERRPEREVGVEVVL 75

Query: 87  --SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAEQCDIL 141
             + +K ++L  +++ + E+G   I+P+ITR++   +     + R++     AA+Q   L
Sbjct: 76  YVALLKGDKLSEVVRAATELGATKIQPLITRHSVPKEMGEGKLRRLKAIAKEAAKQSGRL 135

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P + PP  L    K      Q + A    G+   + ++       N+++ +GPEGG+ 
Sbjct: 136 RVPEVLPPIPL----KAVPEVEQGLVAH--VGARALVREVLDPNR--NLSLAVGPEGGFA 187

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            EE   L    F  P+SLG RILR++TAA A +A+V A  G
Sbjct: 188 EEEVALLEERGF-APVSLGRRILRAETAATALLAIVTAGEG 227


>gi|222097756|ref|YP_002531813.1| 16S ribosomal RNA methyltransferase rsme [Bacillus cereus Q1]
 gi|221241814|gb|ACM14524.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 218

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+ + QK  E+G  A  P      ++    +     ++R+R     AAEQ     +
Sbjct: 54  KGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEI 113

Query: 144 PFIYPPTTLEFLLK-NWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGG 199
           P ++ P + + LL  + +++ C + + +E    E S   + L  +     + I+ GPEGG
Sbjct: 114 PEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGG 173

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              EE   L    FV P SLGPRILR++TA + A++
Sbjct: 174 LAEEEITALREHKFV-PCSLGPRILRTETAPLYALS 208


>gi|218438165|ref|YP_002376494.1| hypothetical protein PCC7424_1175 [Cyanothece sp. PCC 7424]
 gi|218170893|gb|ACK69626.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7424]
          Length = 241

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 15/221 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
            Q HYL  VLR+K G + ++ +G+   W + +      +   ++  + S      +  + 
Sbjct: 22  QQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQL---LDIITTSTELSIKLTLMV 78

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
           +  K N  + +++   E+G+    PVI+  T    +   ++R R   I AAEQ +   +P
Sbjct: 79  ALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVERWRKIAIEAAEQSEREIIP 138

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAILIGPEGG 199
            I+ P      L       +I      C +    E  H   H+      ++ +  GPEGG
Sbjct: 139 QIFEPINFPTALTKIK---EIETNKYICVTRRE-EVNHLFIHLQKPLLNSLVVATGPEGG 194

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + + E +T     F  P+SLG RILR+ TA V   +LV A+
Sbjct: 195 WTNLEVQTAIKAGF-EPVSLGRRILRAVTAPVYIASLVSAV 234


>gi|110004933|emb|CAK99265.1| conserved hypothetical upf0088 protein [Spiroplasma citri]
          Length = 239

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 24/227 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNIL-LFNGK----DGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           + D    +  VLR++    I+ ++NG+      E  S   Y  K I+ K+E    S    
Sbjct: 17  AEDDVKQIKQVLRLRNQTQIICIYNGEHYLTTLEVQSPQKYAFKLIK-KLEQNHESPI-- 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133
             V+ I   I+  + DY++QKS E+G+  I P      V+    +N    ++R       
Sbjct: 74  -TVRLIAGLIRNTKWDYLLQKSTELGVNEIIPFQFSRCVVQLKGENNFKKIERWTKICKE 132

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD---ETCGSENSLEKLHAIAHIPNV 190
           A EQ     +P +    +   +L+ +  +  +V  +   ET   +  L++         +
Sbjct: 133 ATEQSYRNQVPLVNDVESDLKVLQKYQSDVNLVCYEKVVETLSIKQFLQQ-----DFKTI 187

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            I+IGPEGG+   E   L S  +  P+SLG RILR++TA+VA +A++
Sbjct: 188 TIVIGPEGGFTPNEIAVLSSYHYY-PVSLGQRILRAETASVALLAMI 233


>gi|118586988|ref|ZP_01544420.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163]
 gi|118432610|gb|EAV39344.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163]
          Length = 253

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
           K   K + D +H+L  VLR+K+ D + L   +   +L +++ +     F       S+  
Sbjct: 18  KISKKNNPDVFHHLKDVLRVKDKDLVELVADQSA-YLVQVNEISAMEVFFNRLDKLSKDP 76

Query: 79  QSDVQY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130
           +  V+  I  P+ K++ LD++IQK+ E+G+  I  ++T ++ +          + R    
Sbjct: 77  EIPVKTTIVVPLLKSDHLDWLIQKATELGVFKI--ILTNFSYSVVKDTKIEKKLQRYEKI 134

Query: 131 TISAAEQCDILTLP-FIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIA-- 185
              AAEQ   L +P  IY    +E    + DH   IV  +E+   G +++L K+  +A  
Sbjct: 135 VKGAAEQSHRLLVPEIIYEKKFIEQAGLS-DHQIGIVAWEESAKSGEKSNLFKMIRLAKR 193

Query: 186 --HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                 +  + GPEGG   +E + L S  F+    LGPRILR++TA
Sbjct: 194 DSKFNEIVAVFGPEGGISKKEIKKLESSGFIAA-GLGPRILRAETA 238


>gi|227513276|ref|ZP_03943325.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083477|gb|EEI18789.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           buchneri ATCC 11577]
          Length = 252

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87
           H+L+ VLR + GD + L +     +L++I  + G+ +   ++ +     +   +V  +  
Sbjct: 24  HHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQVTATIQKELHMDVELPVEVTIVSG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
             K N+ + ++QK+ E+G   I   P+   I ++ Q +   + R+    +SAAEQ     
Sbjct: 84  LSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQKSEKKLKRLNEVALSAAEQSHRNL 143

Query: 143 LPFI-YPPTTLEFLLKNWD--HNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGP 196
           +P + Y  +  E   + +D   + ++V  +E    G E++L + L  I    ++  + GP
Sbjct: 144 VPTVSYLHSLYELTKRPFDGPFDVKLVAYEEAAKDGEESNLAQALKDIRPDTSIVAVFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           EGG  SEE   L    +++   LGPRILR++TA
Sbjct: 204 EGGISSEEISLLTDQAYISA-GLGPRILRTETA 235


>gi|225027417|ref|ZP_03716609.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353]
 gi|224955244|gb|EEG36453.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353]
          Length = 248

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 24  ASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           A     +++ +VLRMK+G+ + L    K  E++  I  +   I          ++++  V
Sbjct: 19  ADPQDVNHIRNVLRMKKGEKVSLCCEAKGKEYICSIEEIESDIVKAAIIDINGESRELPV 78

Query: 83  QY-IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           +  +F  + K+++++ +IQK+VE+G+  I P+ T+        +     + R      SA
Sbjct: 79  KITLFQGLPKSDKMELIIQKAVELGVAEIVPMATKRAVVKLDAKKAAKKVQRWNEIAKSA 138

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A+Q     +P + P  +  E +      +  ++  ++  G  +S E +  +    ++ I 
Sbjct: 139 AKQSKRGLIPEVKPVMSFKEAVEYGKSMDMLLIPYEDAKGIAHSREVVETVKDKKSLGIY 198

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           IGPEGG+  EE+ +L       P++LG RILR++TA +  ++++
Sbjct: 199 IGPEGGF-PEEEVSLAMKAGAEPVTLGHRILRTETAGMTLLSIL 241


>gi|227524419|ref|ZP_03954468.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088424|gb|EEI23736.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
          Length = 248

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87
           H+L+ VLR + GD + L +     +L++I  + G+ +   ++ +     +   +V  +  
Sbjct: 24  HHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQVTATIQKELHMDVELPVEVTIVSG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
             K N+ + ++QK+ E+G   I   P+   I ++ Q +   + R+    +SAAEQ     
Sbjct: 84  LSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQKSEKKLKRLNEVALSAAEQSHRNL 143

Query: 143 LPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198
           +P + Y  +  E   + +D   ++V  +E    G E++L + L  I    ++  + GPEG
Sbjct: 144 VPTVSYLHSLYELTKRPFD--VKLVAYEEAAKDGEESNLAQALKDIRPDTSIVAVFGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           G  SEE   L    +++   LGPRILR++TA
Sbjct: 202 GISSEEISLLTDQAYISA-GLGPRILRTETA 231


>gi|148652720|ref|YP_001279813.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter sp. PRwf-1]
 gi|148571804|gb|ABQ93863.1| protein of unknown function DUF558 [Psychrobacter sp. PRwf-1]
          Length = 300

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 110/271 (40%), Gaps = 59/271 (21%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTK--- 78
           + + D YH+   VLR K G+   +F+G  G+ L ++  +  KS   K+ +Q  ++     
Sbjct: 29  RLTDDIYHHWCRVLRAKVGEQSWIFDGLGGQSLVELESIDKKSATVKIIHQDTAENTCNY 88

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTI 132
            S +  + S  + +R+DY IQK+ E+G   I+ + +++ +           +   +   +
Sbjct: 89  HSTIALVMS--RGDRMDYAIQKATELGATTIQLLTSQHGEVRLKANQVDKKLSHWQQVAL 146

Query: 133 SAAEQCDILTLPFIYPPTTLEFLL------------------------------------ 156
           SA+EQC +     I  P ++E  L                                    
Sbjct: 147 SASEQCRLNRPTLILSPLSIEQWLQGEMGAVHHMVQHLYDADYYQSYLQQPILPLVLAVP 206

Query: 157 -----KNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
                +  D N QI   FA       N        A +P   ILIG EGG    E +   
Sbjct: 207 SQQEQQTLDVNAQITGHFASANIKGANPDS---TAACLPRFDILIGAEGGLSEAEYQLAR 263

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +  ++ P  LG R+LR++TA V A+A +  I
Sbjct: 264 NTGYL-PWQLGNRVLRTETAPVVALATLMYI 293


>gi|325284031|ref|YP_004256572.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
           proteolyticus MRP]
 gi|324315840|gb|ADY26955.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
           proteolyticus MRP]
          Length = 236

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 21/223 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSRSQTKQSD 81
           +G +  +L  V+R+  GD +L+F+G+  E  ++++ +     ++R   E     +T Q  
Sbjct: 24  TGGEVRHLG-VMRLGAGDPLLVFDGRGREARAEVTALDGLRATLRLVEELPGTPETPQP- 81

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN-MDRVRTYTISAAEQC 138
           V    + +K ++L  +++ + E+G+  I+ ++T++   ++   N + R+      A++Q 
Sbjct: 82  VTLAVALLKGDKLADVVRAATELGVARIQLLVTQHADVRDIGANKLARLNRVAAEASKQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAILIGP 196
                P + PP  L  L   W+    +   +  +   S      LH  +    V +L GP
Sbjct: 142 RRAVTPEVLPPVPLAAL--TWEGQAYVAHPYVHDLLSSH-----LHWDS---PVTLLTGP 191

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           EGG+   E E L S      + LGPRILR++TA +A +  + A
Sbjct: 192 EGGFSESEMEALLSR-GAQGVVLGPRILRAETAPLALLGAIAA 233


>gi|314933750|ref|ZP_07841115.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87]
 gi|313653900|gb|EFS17657.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87]
          Length = 250

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86
           H++ +V+R  EGD++++       +  +I  +  +   ++E + +   +    Q+I    
Sbjct: 25  HHIKNVMRYSEGDSVIVTFLNQTVYKCQIKALNDNY-VELELKDKQNIETELPQHITICS 83

Query: 87  SPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++MIQK+ EMG      +G  R V+          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNESKVAKKLERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAILIGP 196
           LT+P IY  + L+ +     H   ++ A E       L     I         V ++ GP
Sbjct: 144 LTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGDLSHFKQIIKQFKTQDRVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG  S+++ +L S    T + LGPRILR++TA + A++ V
Sbjct: 204 EGGL-SDKEVSLFS-ENSTLVGLGPRILRAETAPLYALSAV 242


>gi|295134596|ref|YP_003585272.1| RNA methyltransferase [Zunongwangia profunda SM-A87]
 gi|294982611|gb|ADF53076.1| RNA methyltransferase [Zunongwangia profunda SM-A87]
          Length = 237

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 13/215 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S ++  ++  VLR  EG  + + NGK   + ++I  +   I+  V     ++ KQ+   Y
Sbjct: 19  SREESKHIIKVLRRSEGALLKVTNGKGLLFTAQI--INADIKQCVAKIIDTE-KQAKPNY 75

Query: 85  ----IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
                 +P K N R ++ ++K+ E+G+  I PVI  +++     +DR      SA +Q  
Sbjct: 76  WLHLAVAPTKMNDRYEWFLEKATEIGVDEITPVICEHSERKVVKLDRYERVLQSAMKQSL 135

Query: 140 ILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              +P +  P     F+ K ++    I   ++    +  +   HA   + +  ILIGPEG
Sbjct: 136 HFRMPKLNEPVDFTAFIEKQFEAEKFIAHCED---DQPRVLLQHAATAVADTLILIGPEG 192

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +  EE     +  F +P+SLG   LR++TAA+ A
Sbjct: 193 DFSPEEIRLALTNKF-SPVSLGSNRLRTETAAIVA 226


>gi|261367268|ref|ZP_05980151.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM
           15176]
 gi|282570870|gb|EFB76405.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM
           15176]
          Length = 242

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 26/236 (11%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG 62
           H +  R   D       Q   +G   H+LA+V+R + G+ ++L  G DG E+   ++ + 
Sbjct: 3   HRYFTRELAD------GQAALTGSDAHHLANVMRARAGEEVVLC-GPDGLEYTGTVTAIQ 55

Query: 63  KS-IRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
              + F V   + S+ +      +F    K  +LD +I+ SVE+G+  I P  +RY    
Sbjct: 56  PGRVEFSVSEGAPSKAEPDMAVTLFVGYPKQGKLDEIIRHSVELGVHEIIPFFSRYCVAA 115

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---- 172
            +      +R       AA+Q     +P +  P      L+N+D  C+ + A +      
Sbjct: 116 PKKEDAKNERYNRIAAEAAKQAGRAQIPHVAMP------LENFDAVCRALSAYDKSLFFY 169

Query: 173 -GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            G  + L +L        +A++ G EGG+ +EE         +T + LGPRILR +
Sbjct: 170 EGGGSPLRELLTPGCAQRLALVTGSEGGFSTEEAAAAAEAGAMT-VGLGPRILRCE 224


>gi|170017331|ref|YP_001728250.1| hypothetical protein LCK_00979 [Leuconostoc citreum KM20]
 gi|169804188|gb|ACA82806.1| DUF558 domain-containing protein [Leuconostoc citreum KM20]
          Length = 245

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 23/174 (13%)

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGM-GAIRPVITRYTQNTHYNMD----RVRTYTISAA 135
           ++  + SP+K +R D+ +QK+ E+G+   I   + R   + H   D    R +    +AA
Sbjct: 77  EISVVVSPLKNDRSDWFVQKATELGVHHIIFTNMARTVTDWHKQQDKKQLRFQKIAQAAA 136

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWD------HNCQIVFADETC---GSENSLEKLHAIAH 186
           EQ   L +P      T++F+  +W        N  +V  +E+     S N ++ +    H
Sbjct: 137 EQAHRLMVP------TVQFI--DWQAMIAQPKNLGLVAWEESARAGESANLVQTIREAPH 188

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              + +L GPEGG  + E   L +  F++   LGPRILR++TA + A++ +  +
Sbjct: 189 GAKIVLLFGPEGGLTTSEVTELTTSHFISA-GLGPRILRAETAPLYALSAISVL 241


>gi|288927552|ref|ZP_06421399.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330386|gb|EFC68970.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 240

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 105/220 (47%), Gaps = 11/220 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQ 83
            ++  + + VLR++ GD + L +G    + ++++ V  G+ +   VE   + +T    + 
Sbjct: 20  AEEAAHASRVLRLESGDEVFLIDGTGCFFKAQLTLVTKGRCLYDIVERLPQEKTWNGRIA 79

Query: 84  YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K  +R+++ ++K+ E+G+     +   +++  +  ++R+    ++A +Q     
Sbjct: 80  VAMAPTKVIDRVEWTLEKATEIGIDEFSLLNCAFSERRNVKLERLDKIVVAAVKQSRKAW 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA----IAHIPNVAILIGPEG 198
            P +      E  +K      + +     C +E   + L+     +     V ILIGPEG
Sbjct: 140 KPLLNDLQPFENFVKQPRKGAKYI---AHCYAEIDKKDLYGELLQLNGDEEVTILIGPEG 196

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  +E     S  +V P+SLG   LR++TAA+AA  + Q
Sbjct: 197 DFSIDEVRLAMSKGYV-PISLGQSRLRTETAALAATMIAQ 235


>gi|116785897|gb|ABK23900.1| unknown [Picea sitchensis]
          Length = 301

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           +  GD++ ++   LR+   D + LFN + G     +  V +S    V  +       + V
Sbjct: 74  RIEGDEFWHMTKALRLGVQDRVELFNARGGLVEGVVLRVERSSADIVALEEPLLLTPTGV 133

Query: 83  QY----IFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQ 137
           Q+     F  +K  R D++I+K  E+G  ++ P++T R T  +   ++R +   ++A +Q
Sbjct: 134 QWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSTLISGNRVERWQRVMLAAIKQ 193

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    +  PT +E +L   + +     A     +   +E L  +       +++GPE
Sbjct: 194 CQRLHQMVVKTPTGIESILPRIETSSVSFLA--MAEATPIVEVLPKVDKKDGGLLIVGPE 251

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           G +  +E   L     + P+ LGP  LR +T
Sbjct: 252 GDFTDKEVRALTEAGAI-PVGLGPCRLRVET 281


>gi|292669689|ref|ZP_06603115.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648486|gb|EFF66458.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 246

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 18/232 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW--LSKISYVGKS 64
           ++RLF    L  +   + +G   H+LA V+R + GD++++  G DG    ++ I+    +
Sbjct: 1   MRRLFYAGELAEEI--RITGGDAHHLARVMRAQIGDDVIV-AGADGRAARMTVIAAARDA 57

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-T 117
           +   + EY ++ + + ++V    + +K  ++D+++QK+ E+G   I P     V+ RY  
Sbjct: 58  VTLALAEYIAQEEARGTEVFLAQALLKGEKMDFVVQKAAELGAAGIYPVKTEHVVVRYDA 117

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WD-HNCQIVFADETCG 173
           +       R +     AA+QC    L  + P   L  LL +   +D  +  IVF  E   
Sbjct: 118 KKAAAKTARWQKIADEAAKQCGRSMLMPVAPIRPLPDLLVDARIFDPADTAIVFCYEQEH 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            ++    L  I     V I +G EGG+ S E + + +     P+SLG  ILR
Sbjct: 178 RQSVRTVLQTI-KARRVVIFVGAEGGFSSAEADMICAAGG-QPVSLGRLILR 227


>gi|255656430|ref|ZP_05401839.1| hypothetical protein CdifQCD-2_12199 [Clostridium difficile
           QCD-23m63]
 gi|296450123|ref|ZP_06891884.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08]
 gi|296878504|ref|ZP_06902509.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07]
 gi|296260886|gb|EFH07720.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08]
 gi|296430311|gb|EFH16153.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07]
          Length = 252

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 22/227 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQ 79
            G+   +++ VLR K G+ + + +  + E++ +I  + KSI       KV+    S+ K 
Sbjct: 21  EGEDVKHISKVLRYKPGEKLEICDKNNNEYICEIVNIDKSIVNLNILEKVDINRESELK- 79

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTIS 133
             ++      K  +++ ++QK  E+G+  I      R V     +      +R       
Sbjct: 80  --IRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVAKVDDKKEDKKFERWERIIYE 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPN 189
           AA+Q     +P +    T +  L++   N   +   E   +E ++   HA+    ++I +
Sbjct: 138 AAKQSKRGKIPKLRGVLTFKEALEDMKKNNINICPYE---NERTVPMKHALQNCDSNIDS 194

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           V I IGPEGG+  EE E +        +SLGPRILR++TA+V A  +
Sbjct: 195 VGIFIGPEGGFSEEEIEQIQK-NNCNVVSLGPRILRTETASVVASTI 240


>gi|326693043|ref|ZP_08230048.1| hypothetical protein LargK3_04782 [Leuconostoc argentinum KCTC
           3773]
          Length = 245

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 27/251 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P+       A  D + +   VLR + G     F  +D E +           
Sbjct: 1   MQRYFLKQPIADDLVLTADQDVFKHFGKVLRARVGSQAE-FVSQDQEVVVGEVVAITPTE 59

Query: 67  FKVEYQSR-SQTKQSDVQY--IFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQ 118
             ++  SR ++  +  VQ   I SP+K +R D+ +QK+ E+G+  I        +  + +
Sbjct: 60  MTLKVVSRLTENVELPVQVTVIVSPLKNDRSDWFVQKATELGVHRIIFTTMTRTVADWRK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-----VFADETCG 173
                  R+     +AAEQ   L +P      T++FL  +W     +     + A E   
Sbjct: 120 QQLKKATRLEKIAQAAAEQSHRLMIP------TIDFL--SWSEVLSLPKQAGIVAWEESA 171

Query: 174 SENSLEKL-HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            E  +  L   +  +P    +A++ GPEGG  ++E   L    F  P  LGPRILR++TA
Sbjct: 172 REGEVGTLVQVVKPLPTGAELALVFGPEGGLTADEVAALSEHGF-KPAGLGPRILRAETA 230

Query: 230 AVAAMALVQAI 240
            + A++ +  +
Sbjct: 231 PLYALSAISVL 241


>gi|34541729|ref|NP_906208.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
           W83]
 gi|34398047|gb|AAQ67107.1| conserved hypothetical protein TIGR00046 [Porphyromonas gingivalis
           W83]
          Length = 248

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I+   +   D+  ++  VLRM+ GD + L +G+   + + I     KS    V  Q   Q
Sbjct: 11  IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQEPWQ 70

Query: 77  TKQSD-VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
               D +    +P K + R+++M++K VE+G+  +  + + +++      +R+    ISA
Sbjct: 71  KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHA--IAHI-PN 189
            +Q    + P I     ++ ++ +        I + DE   +E +  + +     H+  +
Sbjct: 131 MKQSLKASFPVIQVNIPIQTVIADTPKTAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV---QAIC 241
           V ILIGPEG +   E E+     F  P+SLG   LR++TA + A   +   QA C
Sbjct: 191 VLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQWIHTLQACC 244


>gi|294791827|ref|ZP_06756975.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27]
 gi|294457057|gb|EFG25419.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27]
          Length = 252

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R  M++   +   + + G +       GK+
Sbjct: 10  MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKSITVTGSDNRCGTYQITAEVDGKA 67

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               +EY   +      +  + S +K  +L++++QK+ E+ +  I  V     + +Y + 
Sbjct: 68  QAKLIEYVEGNLASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 126

Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R     + AA+QC    LP +    TL   L       ++V  +   G   ++
Sbjct: 127 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 186

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235
            L+ LH+   + +V I IGPEGGY  +EKE    + +    +SLG  ILR++TAA+ ++A
Sbjct: 187 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 244

Query: 236 LVQ 238
           +++
Sbjct: 245 MIR 247


>gi|298209191|ref|YP_003717370.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus
           HTCC2559]
 gi|83849118|gb|EAP86987.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus
           HTCC2559]
          Length = 235

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 14/216 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI- 85
           D+  ++  VLR K GD + + NGK   WL  +  +  +    V   +  + ++S   Y+ 
Sbjct: 21  DESKHIVKVLRKKAGDTLHVTNGKG--WLFTVEIISDNHNKCVGVITEKKYQESQQLYLH 78

Query: 86  --FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K N R+++ ++K+ E+G+  I P++  +++      DR      SA +Q   L 
Sbjct: 79  VLIAPTKMNDRMEWFLEKATEIGISEITPILCDHSERKTIKTDRFERVLQSAMKQSLQLH 138

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILIGPEGGY 200
           LP +   T    ++       + V        EN  ++L     I +  + ILIGPEG +
Sbjct: 139 LPKLNALTPFSEVIGQNIEGQKFV-----AHCENDKKRLPMQNEITSNRLTILIGPEGDF 193

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             EE +      ++ P++LG   LR++TA + A  +
Sbjct: 194 SLEEIQQALDYNWL-PVTLGNTRLRTETAGIVATTI 228


>gi|228861774|ref|YP_001710445.2| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 254

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 19/235 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDV 82
           +G +  +   V R++ G+ IL+ +G+ G   S    S   + +  +V+           V
Sbjct: 24  AGQEARHAVTVSRVRSGEGILVGDGR-GTIASGTVTSAEPQRLELRVDAVEAHPEPSPRV 82

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136
             + +  K +R +  +Q + E+G+ A+ P      ++R+  Q      DR R     AA+
Sbjct: 83  VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAAK 142

Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN------ 189
           Q     +P + P  TT + +         ++  D T   E  L +L   A   +      
Sbjct: 143 QSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTA--EARLSRLDLAAADGDADAATD 200

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V +++GPEGG    E E L     + P++LG  ILR+ TA  AA+ALV A  G W
Sbjct: 201 VLLVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGLGRW 254


>gi|169156681|emb|CAQ01839.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 233

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 19/235 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDV 82
           +G +  +   V R++ G+ IL+ +G+ G   S    S   + +  +V+           V
Sbjct: 3   AGQEARHAVTVSRVRSGEGILVGDGR-GTIASGTVTSAEPQRLELRVDAVEAHPEPSPRV 61

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136
             + +  K +R +  +Q + E+G+ A+ P      ++R+  Q      DR R     AA+
Sbjct: 62  VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAAK 121

Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN------ 189
           Q     +P + P  TT + +         ++  D T   E  L +L   A   +      
Sbjct: 122 QSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTA--EARLSRLDLAAADGDADAATD 179

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V +++GPEGG    E E L     + P++LG  ILR+ TA  AA+ALV A  G W
Sbjct: 180 VLLVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGLGRW 233


>gi|91214831|ref|ZP_01251804.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC
           700755]
 gi|91187258|gb|EAS73628.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC
           700755]
          Length = 233

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 10/209 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQYI 85
           +  +++ VLR   G++I L NG  G     I       + KVE ++  + K+ +  +   
Sbjct: 22  ESRHISKVLRKSIGESIYLTNGL-GICAEGILISNHPKKCKVEVKTIIEEKKPNFRIHIA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P++  +++      DR      +A +Q     LP
Sbjct: 81  IAPTKANDRFEWFLEKATEIGIDEITPLLCDHSERRKIKADRYEKVLQTAMKQSLKYRLP 140

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            + P  +   L+K+   + +++   E    +++ EKL    +  N+ ILIGPEG +  +E
Sbjct: 141 LLNPMISFNDLMKSDSDSKKMIAHCE----DDTKEKLSGTVNRDNL-ILIGPEGDFSIDE 195

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +      F+ P+SL    LR++TA + A
Sbjct: 196 IKKAIKHEFL-PISLSEARLRTETAGIVA 223


>gi|187778463|ref|ZP_02994936.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC
           15579]
 gi|187772088|gb|EDU35890.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC
           15579]
          Length = 255

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD+I + N +  E+  KI  + K S+  
Sbjct: 6   KFFVPAENIIDKKAIIDGDDVKHIYKVLRLECGDSININNCQGKEYKGKIESIDKKSVVV 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q +   +     Y++  + K+ ++D ++QKS E+G+  I P+IT   +        
Sbjct: 66  KILEQVKVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEIKTSLKEF 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSL 178
             +DR     + A +QC    +P +  P     LL+       I+    + E  G ++ +
Sbjct: 126 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKDMDLIIVPYESKENYGIKSLI 185

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + +           +I    G   E +  L        ++LGPRI R++TA +   +++ 
Sbjct: 186 KNIQYEKENIKNIGIIIGPEGGFEESEIRLLEEIKAQIVTLGPRIFRTETAGIVCASIIS 245

Query: 239 AICGD 243
              GD
Sbjct: 246 YELGD 250


>gi|260911769|ref|ZP_05918341.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634095|gb|EEX52213.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 240

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 17/223 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQ 83
            ++  + + VLR++ GD + L +G    + ++++ V KS  +   VE   + +T    + 
Sbjct: 20  AEEAAHASRVLRLESGDEVFLIDGAGCFFKAQLTLVTKSRCLYDIVERLPQEKTWHGRIA 79

Query: 84  YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K  +R+++ ++K+ E+G+     +   +++  +  ++R+    ++A +Q     
Sbjct: 80  IAMAPTKVIDRVEWTLEKATEIGVDEFSLLNCAFSERRNVKLERLDKIVVAAVKQSRKAW 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-------NSLEKLHAIAHIPNVAILIG 195
            P +    + E  +K      + +     C +E       N L +L+       V ILIG
Sbjct: 140 KPLLNDIQSFEHFVKQPRKGVKYI---AHCYAEIDKKDLYNELTQLNCD---EEVTILIG 193

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           PEG +  EE     S  +V+ +SLG   LR++TAA+AA  + Q
Sbjct: 194 PEGDFSIEEVRLAMSQGYVS-VSLGQSRLRTETAALAATMIAQ 235


>gi|309792795|ref|ZP_07687238.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6]
 gi|308225159|gb|EFO78944.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6]
          Length = 244

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSP 88
           H L  VLR+  G  I+L +G+  ++  +++ V ++ +  +V     +     D+    + 
Sbjct: 28  HQLGRVLRLAAGTQIMLLDGQGNQYTLELTGVSRTCVTGRVLSTGPAPDPAYDLTLYVAL 87

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
           I+  R ++++QK  E+G+    PV  +R   N   +    +R +     AAEQ     LP
Sbjct: 88  IRPERFEWVLQKGTELGVRRFVPVHFSRCLPNERTDGRKTERWQRIIREAAEQAWRGRLP 147

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLHAIAHIPNVAILIGPEGGYHSE 203
            +  P +                  E  GS   L E L   A   + AIL GPEGG   +
Sbjct: 148 ELAAPLSFAAACTAVAATQYTYILWE--GSAPPLREHLAPSAATASYAILSGPEGGITPD 205

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E   L +   + P+SLGP ILR++TA + A A++
Sbjct: 206 EI-ALATQHGIMPVSLGPHILRAETAPIMAAAVL 238


>gi|47504981|gb|AAT33657.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           'Ames Ancestor']
          Length = 218

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+ + QK  E+G  A  P      ++    +     ++R+R     AAEQ     +
Sbjct: 54  KGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEI 113

Query: 144 PFIYPPTTLEFLLK-NWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGG 199
           P ++ P + + LL  + +++ C + + +E    E S   + L  +     + I+ GPEGG
Sbjct: 114 PEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGG 173

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              EE   L    FV P SLGPRILR++TA + A++
Sbjct: 174 LAEEEITVLREHNFV-PCSLGPRILRTETAPLYALS 208


>gi|313608746|gb|EFR84566.1| ribosomal RNA small subunit methyltransferase E [Listeria
           monocytogenes FSL F2-208]
          Length = 255

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 15/218 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFITYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L ++     P  ++L 
Sbjct: 140 QSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229
             GPEGG    EKE LH       L+ LGPRILR++TA
Sbjct: 200 IFGPEGGI--SEKELLHLQEVNAKLAGLGPRILRTETA 235


>gi|223044376|ref|ZP_03614410.1| protein YqeU [Staphylococcus capitis SK14]
 gi|222442245|gb|EEE48356.1| protein YqeU [Staphylococcus capitis SK14]
          Length = 250

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86
           H++ +V+R  EGD++++       +  +I  +  +   ++E + +        Q+I    
Sbjct: 25  HHIKNVMRYSEGDSVIVTFLDQTVYKCQIKALNDNY-VELELKDKQNIDTELPQHITICS 83

Query: 87  SPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++MIQK+ EMG      +G  R V+          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNESKVAKKLERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAILIGP 196
           LT+P IY  + L+ +     H   ++ A E       L     I         V ++ GP
Sbjct: 144 LTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGDLSHFKQIIKQFKTQDRVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG  S+++ +L S    T + LGPRILR++TA + A++ V
Sbjct: 204 EGGL-SDKEVSLFS-ENSTLVGLGPRILRAETAPLYALSAV 242


>gi|195998640|ref|XP_002109188.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens]
 gi|190587312|gb|EDV27354.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens]
          Length = 246

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 13/237 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRF 67
           R +++  L    +    GDQ H++ +V+R++ G+ + + NG++    ++I +Y G  I  
Sbjct: 5   RFYLNSNLVKNGRVALQGDQLHHMKNVMRLRVGETVEIINGRNQLAQARIDAYQGNQIAH 64

Query: 68  KVEYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
               Q  +Q    +  +  I   I++  LD +I+K  E+G+       +   + + ++  
Sbjct: 65  VNIDQVLTQLVLDKPRINLIQPLIRSKGLDLVIEKCTELGVSHFYLYASELGEISQFSSA 124

Query: 126 RVRTYT---ISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFAD--ETCGSENSLE 179
           R +  T   ISA +QC  L LP +     L  L L++  H   I F D      ++    
Sbjct: 125 RCKKLTEIAISAIKQCGRLDLPTLTFADRLHNLKLQSNVH--PICFGDTRHLDNAQVGFT 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               +A    V I  GPE G+  +E   L +    T + + P ILRS+TA++   AL
Sbjct: 183 PQSTLAQCKTVCI--GPEKGFSDKEINYLENQLGATGIKISPFILRSETASITLTAL 237


>gi|167757694|ref|ZP_02429821.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704]
 gi|167664576|gb|EDS08706.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704]
          Length = 245

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRSQTKQSDVQ 83
           G   +++ +VLRM+ G+ + + +G + ++   +     G+++   ++ +    T+     
Sbjct: 20  GSDVNHMKNVLRMRPGEAVAISDGDNLKYRCVVEGYEEGRAV-LAIQQRMPVDTELPCRI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            +F  + K ++++ ++QK+VE+G   + PV TR +      +     + R +    SAA+
Sbjct: 79  ILFQGLPKQDKMELIVQKAVELGASQVVPVATRRSVVKLDEKKAAKKLQRWQQIAESAAK 138

Query: 137 QCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +    +  E L K  + +  ++  +   G E + + + +IA   +V I IG
Sbjct: 139 QAGRGYIPQVSSVLSYQEALEKAGELDVLLIPYELAEGMEEARKVVASIAQGQSVGIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+  EE +          ++LG RILR++TA +A ++++
Sbjct: 199 PEGGFEKEEVDAAIR-QGAKAITLGRRILRTETAGLAILSIL 239


>gi|255282406|ref|ZP_05346961.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM
           14469]
 gi|255266990|gb|EET60195.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM
           14469]
          Length = 246

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDV 82
           +G   +++ +VLRM+ G    L +G+    +  +I+ V K  I   +E  S   T+    
Sbjct: 19  TGSDVNHIRNVLRMEAGARFTLSDGQSSRLYTCRITSVEKEKIWAAIESVSEEGTELPSR 78

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
            ++F  + K++++D+++QK+VE+G+  I PV+T+ T      +       R       AA
Sbjct: 79  IWLFQGLPKSDKMDWIVQKAVELGVYGIVPVMTKRTVVRLDAKKEKARCARWNAIAEGAA 138

Query: 136 EQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +Q   + +P +  P +  + L    D   +++  +   G E +      IA   +VA+ I
Sbjct: 139 KQSGRMLVPQVKEPVSFAQALQMAQDMQIRLIPYELAGGMEKTRRIFSQIAPGQSVAVFI 198

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  EE        FV  ++LG RILR++TA ++A+A++
Sbjct: 199 GPEGGFEEEEVCRAEEAGFVR-VTLGKRILRTETAGLSALAML 240


>gi|290894231|ref|ZP_06557200.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556228|gb|EFD89773.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 255

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 15/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L ++     P  ++L 
Sbjct: 140 QSHRTVIPEVHYAASFKELMFDHVHYDYVITAYEESAREGEDSALASLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVAAMA 235
             GPEGG    EKE LH       L+ LGPRILR++TA +  ++
Sbjct: 200 IFGPEGGI--SEKELLHLQEVNAKLAGLGPRILRTETAPLYVLS 241


>gi|302346384|ref|YP_003814682.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC
           25845]
 gi|302150957|gb|ADK97218.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC
           25845]
          Length = 244

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 15/216 (6%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV-----QYIFSP 88
            VLR+KEGD + L +G+   + ++++ V      K  Y  +   KQ  V         +P
Sbjct: 28  RVLRLKEGDEMFLMDGEGCFYKAEVALVSSK---KCLYTIKETLKQEPVWRGKIHLAIAP 84

Query: 89  IK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            K   R+++M +K+ E+G   I  +  ++++     +DR+    ISA +Q      P + 
Sbjct: 85  TKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRVDRIEKIVISAVKQSRKGWKPVVN 144

Query: 148 PPTTLEFLLKNWDHN-----CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P T     ++N  +N     C             ++ +    +   ++ +L+GPEG +  
Sbjct: 145 PMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQEEQPSSAEDITVLVGPEGDFSI 204

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +E        F + ++LG   LR++TA ++A+ + Q
Sbjct: 205 DEVSFALEHGFES-VTLGNSRLRTETAGLSAVMMSQ 239


>gi|23099420|ref|NP_692886.1| hypothetical protein OB1965 [Oceanobacillus iheyensis HTE831]
 gi|22777649|dbj|BAC13921.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 255

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 21/248 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDG-EWLSKIS--YV 61
           ++R FV      +   +  GD  H++  V+R + G+ ++    NG+    ++ K+S  YV
Sbjct: 1   MQRYFVSQENVTENSIRIIGDDVHHIQRVMRAQVGEKLICVSDNGRAALTYIIKLSDDYV 60

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
              I   +E  +      +  Q I  P K ++ D ++QK  E+G  A  P     +    
Sbjct: 61  DVEIEKWLEESNELPVSVTIAQGI--P-KGDKFDLILQKGTELGADAFIPFQAERSVALW 117

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG- 173
              +  H  + R +     A+EQ     +P ++    L+ +L         +FA E    
Sbjct: 118 NDEKKYHKKVKRFQKILKEASEQSHRNRIPSLHSVMNLKQILDEASAYTVKLFAYEEEAK 177

Query: 174 ----SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               S N +  L  I     + + IGPEGG+  +E + L    F+ P+ LG RILR++TA
Sbjct: 178 TEKMSSNLVNTLQNILSHDKIILCIGPEGGFSIKEADQLRENGFI-PIRLGKRILRTETA 236

Query: 230 AVAAMALV 237
           A+ A++ +
Sbjct: 237 ALYALSSI 244


>gi|332712271|ref|ZP_08432199.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L]
 gi|332349077|gb|EGJ28689.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L]
          Length = 259

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 34/258 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++RL +  P   + QG    D Q HYL  VLR+++GD  +  +G+ G ++S++   G   
Sbjct: 1   MQRLVIS-PAQRQDQGIVLTDAQQHYLIRVLRLRKGDRFIAMDGEGGWYVSELE--GDLT 57

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
           + K+      QT+    V  + +  K +  + +   + E+G+  I P+ +  T    +  
Sbjct: 58  QAKIVASEHIQTELPKQVTLMAAMPKGSGFEQICLMATELGVTRIVPLKSDRTLLNPSPQ 117

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSL 178
            + R R  T  AAEQ +   +P I  P        ++  + Q+    E     C +    
Sbjct: 118 KLQRWRRITQEAAEQSEREVVPKILEPV-------DFSDSLQLPETREAYRYICVARGKA 170

Query: 179 EKLHAI---------------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
             L                  A  P + I  GPEGG+ ++E E   +  F+  +SLG RI
Sbjct: 171 PHLLNCLLDLRLGFDTGQTDPAQHPGIVIATGPEGGWTTQELEQATAAGFIA-VSLGSRI 229

Query: 224 LRSDTAAVAAMALVQAIC 241
           LR+ TA + ++++V A+ 
Sbjct: 230 LRAITAPIVSLSIVAAVS 247


>gi|188997402|ref|YP_001931653.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932469|gb|ACD67099.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 236

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 118/237 (49%), Gaps = 29/237 (12%)

Query: 22  GKASGD-------QYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS--IRFKVEY 71
           G+  GD       +Y++   VLR+K+ D ++  N  DG  +L+K+  V K+  I   +E 
Sbjct: 8   GEKEGDYLVLKDQEYNHAVKVLRIKQND-LIEINTLDGNVYLAKVEDVTKNQLIALPIEK 66

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRV 127
               + +     Y   P + +++D +I+   ++G+  + PVI++ +    Q+    +++ 
Sbjct: 67  IPVKEEEFKITLYQCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDVTKKLEKW 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC----QIVFADETCGSENSLEKLHA 183
           +   +++ +QC     PF   P  +E  +K ++  C    ++VF ++    +N ++ L  
Sbjct: 127 QRIALNSIKQC---KRPF---PLIIEKPIKLYNIKCNDDLKVVFYEKE--QQNKVKMLMN 178

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             +    ++ IG EGG+  EE E L    F+ PLSLG  IL+ +TA +  +  ++ I
Sbjct: 179 -NNFKTASVFIGNEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233


>gi|197120677|ref|YP_002132628.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K]
 gi|196170526|gb|ACG71499.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K]
          Length = 240

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 15/224 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  HYL  VLR+  G  + LF+G+ G W  + + +       +  +  +    + V  + 
Sbjct: 23  EARHYLRDVLRLAPGAAVELFDGRGGAW--EATVLDGFEALALGARRAAPGGGAPVWLLV 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           +  K  ++D ++QK+ E+G   I P      V+    +       R R     AA QC  
Sbjct: 81  ALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKGEARAARWRRIAEEAARQCGR 140

Query: 141 LTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
             +P +  P  L   L          VF     G  +  E   + A     A ++GPEGG
Sbjct: 141 ADVPEVRAPAPLGAALAEVPAGFGAFVF---HPGGASLSEAAPSPAG--GYAAVVGPEGG 195

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               E+E   +       SLGPR+LR++TAA+ A+AL+QA  GD
Sbjct: 196 LTDAEREAC-ARAGARDTSLGPRVLRAETAAIVAVALLQARFGD 238


>gi|269118812|ref|YP_003306989.1| hypothetical protein Sterm_0173 [Sebaldella termitidis ATCC 33386]
 gi|268612690|gb|ACZ07058.1| protein of unknown function DUF558 [Sebaldella termitidis ATCC
           33386]
          Length = 236

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 12/219 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87
           +++ +V R K GD I L +GK  E+ + I+ +G K I  +V E    S + + ++     
Sbjct: 26  NHVKNVYRYKTGDTIRLIDGK-FEYKAVIAEIGNKRILLRVTEKHEDSYSLRVELDIALG 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K ++++  +QK  E+G+  I P+ T R       + ++  T T  A +QC  + +P I
Sbjct: 85  ILKNDKMNMALQKLTEIGINKIIPLKTDRVVVKLSDSKEKWNTVTEEALKQCRGVKIPEI 144

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
               TL+ +   +    +++FA E   SEN             +  LIGPEGG+  EE +
Sbjct: 145 ERILTLKDI--EFSAYDKVLFAYENS-SENKPVFTILSGEEKRILYLIGPEGGFTEEETK 201

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            +     +  +SLG RI R++TAA+    ++  I  D Y
Sbjct: 202 YIREQGAL-EISLGKRIYRAETAAI----VMGGILADVY 235


>gi|227510269|ref|ZP_03940318.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189921|gb|EEI69988.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 248

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87
           H+L+ VLR + GD + L +     +L++I  + G+ +   ++ +     +   +V  +  
Sbjct: 24  HHLSKVLRAEVGDKVQLVSVTHLVYLAEIGSIDGRQVTATIQKELHMNVELPVEVTIVSG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
             K N+ + ++QK+ E+G   I   P+   I ++ Q +   + R+    +SAAEQ     
Sbjct: 84  LSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQKSEKKLKRLNEVALSAAEQSHRNL 143

Query: 143 LPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198
           +P + Y  +  E   + +D   ++V  +E    G E++L + L  I    ++  + GPEG
Sbjct: 144 VPTVSYLHSLYELTKRPFD--VKLVAYEEAAKDGEESNLAQALKDIRPDTSIVAVFGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           G  SEE   L    +++   LGPRILR++TA
Sbjct: 202 GISSEEISLLTDQAYISA-GLGPRILRTETA 231


>gi|220915389|ref|YP_002490693.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953243|gb|ACL63627.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 240

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 17/225 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           +  HYL  VLR+  G  + LF+G+ G W  + + +       +  +  +    + V  + 
Sbjct: 23  EARHYLRDVLRLAPGAAVELFDGRGGAW--EATVLDGFEALALGARRAAPGGGAPVWLLV 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           +  K  ++D ++QK+ E+G   I P      V+    +       R R     AA QC  
Sbjct: 81  ALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKGEARAARWRRIAEEAARQCGR 140

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIGPEG 198
             +P +  P  L   L          F     G+      L   A  P    A ++GPEG
Sbjct: 141 ADVPEVRAPAPLGAALAEVPAGFG-AFVFHPGGA-----ALSEAAPSPAGGYAAVVGPEG 194

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G    E+E   +       SLGPR+LR++TAA+ A+AL+QA  GD
Sbjct: 195 GLTDAEREAC-ARAGARDTSLGPRVLRAETAAIVAVALLQARFGD 238


>gi|47567876|ref|ZP_00238584.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus
           G9241]
 gi|47555553|gb|EAL13896.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus
           G9241]
          Length = 218

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+ + QK  E+G  A  P      ++    +     ++R+R     AAEQ     +
Sbjct: 54  KGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEI 113

Query: 144 PFIYPPTTLEFLLK-NWDHN-CQIVFADETCGSENS--LEKLHAIAHIPNVAILIGPEGG 199
           P ++ P + + LL  + +++ C + + +E    E S   + L  +     + I+ GPEGG
Sbjct: 114 PEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGG 173

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
              EE   L    FV P SLGPRILR++TA
Sbjct: 174 LAEEEITALREHKFV-PCSLGPRILRTETA 202


>gi|171920821|ref|ZP_02931998.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188024285|ref|ZP_02996977.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188518636|ref|ZP_03004077.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524480|ref|ZP_03004487.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195867650|ref|ZP_03079652.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198273733|ref|ZP_03206268.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|209554158|ref|YP_002284700.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225551384|ref|ZP_03772330.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|171903589|gb|EDT49878.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188018957|gb|EDU56997.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188997757|gb|EDU66854.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659714|gb|EDX53094.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660707|gb|EDX53962.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198249761|gb|EDY74542.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|209541659|gb|ACI59888.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225379199|gb|EEH01564.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
          Length = 234

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 32/222 (14%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY----- 84
           H++ +V+RM+  D I++ N           ++ + I  +  + +  +   +D +      
Sbjct: 22  HHIKNVMRMRLHDEIIVINETQA-------FIAEIINLEPLHATIIKPYFNDCELSTKID 74

Query: 85  IF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILT 142
           +F + IK N  ++++QK+ E+G+ +I   I + T N T    +R+ T    A EQ     
Sbjct: 75  LFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNNRISTIIKEACEQARRNY 134

Query: 143 LPFIYPPTTLEFLLK---NWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           L   Y   +   LLK   N+D       N + +F ++     ++ +K         +A++
Sbjct: 135 LVNYYEQFSFSELLKVLLNYDLILVAYENEKQIFLNDIFKENSTYQK---------IALV 185

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           IGPEGG+  EE   L  +  V  +SL   ILRS+TA++  +A
Sbjct: 186 IGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227


>gi|49660071|gb|AAT68326.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
          Length = 168

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQ 137
           Q  V   F  +K  R D++I+K  E+G  ++ P++T  +     N +DR+   + +AA+Q
Sbjct: 2   QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 61

Query: 138 CDILTLPFIYPP----TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           C  L    + PP    T L+ +LK+    C +  A+    ++  L  +++ A   +  ++
Sbjct: 62  CQRLHQMVLNPPIKFGTLLDHILKS--KLCLVATAE----AKPLLNAVNSSAKESSGLLI 115

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +GPEG +  +E E +      T + LGP  LR +TA +A +A
Sbjct: 116 VGPEGDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLA 156


>gi|255533946|ref|YP_003094318.1| hypothetical protein Phep_4065 [Pedobacter heparinus DSM 2366]
 gi|255346930|gb|ACU06256.1| protein of unknown function DUF558 [Pedobacter heparinus DSM 2366]
          Length = 234

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 8/211 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDVQ 83
           ++  +   VLR+  G  + L +G  G + ++I+   K   ++R  +E Q     ++  + 
Sbjct: 19  EESRHCTRVLRLGTGAVVYLIDGIGGLYKAEITGETKRQVNLRI-IEVQKEYHKRRHYLH 77

Query: 84  YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K  +RL++ ++K+ E+G+  I PVI   ++      DR+     +A +Q     
Sbjct: 78  IAVAPTKNIDRLEWFLEKATEIGIEEITPVICDRSERKVVKEDRLNKVITAAVKQSLQAY 137

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
            P + P  +L   LK  + + +++       +   +  +  +    +  ILIGPEG +  
Sbjct: 138 HPRLNPQISLSAFLKQKNDSLKMIAHCVDAAARQYISDV--VKPAGSYTILIGPEGDFTG 195

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +E E      +  PL+LG   LR++TAA+AA
Sbjct: 196 QEIEMALQSGY-KPLTLGNTRLRTETAALAA 225


>gi|315645962|ref|ZP_07899083.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453]
 gi|315278723|gb|EFU42037.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453]
          Length = 256

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +GD   ++  V+R + GD +++ +G   E + +I  +  +  F V  +S     +  +Q 
Sbjct: 19  TGDDARHITKVMRGRLGDKLIVSDGVSREAMVEIESLEAASVFAVVIESMEMRNEPRLQV 78

Query: 85  IF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               S  K ++++ +IQK  E+G  +  P ++  T      +     ++R R     AAE
Sbjct: 79  TIAQSLPKGDKMETVIQKCTEIGAVSFAPFLSERTIVQYDAKKEGKRLERWRKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSE-NSLEKLHAIAHIPN----- 189
           Q     +P +  P +   LL  +     + F  ++  GS+   + K      +P      
Sbjct: 139 QAHRNRVPSVEQPLSWRNLLAAFSSYDAVCFCYEKEHGSQLRDVLKPFVEQALPESGSQA 198

Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + +++GPEGG+  EE         V+ + LG RILR +TA + A+A
Sbjct: 199 CLLLVVGPEGGFTEEECRAAEDAGAVS-VGLGRRILRCETAGMTALA 244


>gi|301301218|ref|ZP_07207374.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851217|gb|EFK78945.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 243

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62
           ++R F D    I T+ + + + Y ++  VLRMK GD   L +  D E + K+       G
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHVIKVLRMKVGDAFELVD--DAEVVHKMEITKIEDG 56

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           K+    VE         S+V       K ++ D+++QK  EMG       I  Y+     
Sbjct: 57  KAEATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWD 116

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173
            + +   + R++    SAAEQ     +P +    T    LK+ D   ++ +IV  +E+  
Sbjct: 117 RKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172

Query: 174 SENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              S      +   P+  I I GPEGG   +E E L +  F+    LGPRI+R++TA + 
Sbjct: 173 KGESGNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231

Query: 233 AMA 235
            +A
Sbjct: 232 FLA 234


>gi|188994065|ref|YP_001928317.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
           ATCC 33277]
 gi|188593745|dbj|BAG32720.1| conserved hypothetical protein with DUF558 domain [Porphyromonas
           gingivalis ATCC 33277]
          Length = 248

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I+   +   D+  ++  VLRM+ GD + L +G+   + + I     KS    V  Q   Q
Sbjct: 11  IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 70

Query: 77  TKQSD-VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
               D +    +P K + R+++M++K VE+G+  +  + + +++      +R+    ISA
Sbjct: 71  KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHA--IAHI-PN 189
            +Q    + P I     ++ ++ +        I + DE   +E +  + +     H+  +
Sbjct: 131 MKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           V ILIGPEG +   E E+     F  P+SLG   LR++TA + A
Sbjct: 191 VLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVA 233


>gi|297588453|ref|ZP_06947096.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297573826|gb|EFH92547.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 241

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 30/234 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
           G+ Y+++ + LR+ +GD I    G D  ++++I  +    I  K+         + ++QY
Sbjct: 20  GEDYNHIKNSLRLTKGDLIHQVIG-DTTFVTEIEDITPDEIICKI-------IDEDNIQY 71

Query: 85  IFSPI---------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129
             SP+         K+++ +Y+IQK+ E+G+  I      R V+    +      +R   
Sbjct: 72  -ESPLNITLYQCILKSDKNEYIIQKATELGVNRIVFVETERTVVKLDEKKWIKKKNRFEK 130

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             + +++Q     +P I     +  +    +    + + +ET     S + L   ++  +
Sbjct: 131 IALESSKQSKRTFIPEIEGLININKISTQNNFLNLVFYENET----ESFQSLLTNSNNKD 186

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + I IGPEGG   E  + L S  F + +SLG RILR+DTA + A++++Q   GD
Sbjct: 187 INIFIGPEGGLSEENLQVLKSKGFKS-VSLGNRILRADTAPICALSIIQYELGD 239


>gi|282850175|ref|ZP_06259554.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745]
 gi|282579668|gb|EFB85072.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745]
          Length = 243

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R  M++   +   + + G +       GK+
Sbjct: 1   MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEVDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               +EY   +      +  + S +K  +L++++QK+ E+ +  I  V     + +Y + 
Sbjct: 59  QAKLIEYVEGNLASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 117

Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R     + AA+QC    LP +    TL   L       ++V  +   G   ++
Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235
            L+ LH+   + +V I IGPEGGY  +EKE    + +    +SLG  ILR++TAA+ ++A
Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 235

Query: 236 LVQ 238
           +++
Sbjct: 236 MIR 238


>gi|33865690|ref|NP_897249.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH
           8102]
 gi|33632860|emb|CAE07671.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 242

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 12/216 (5%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           + HYL  VLR + GD I + +G    W +++     ++R  V        +   +    S
Sbjct: 30  EQHYLRRVLRCRVGDTIDVVDGCGSLWQAQL-ISADALRVSVPADQIEPVRVPRLGLGLS 88

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            I+    +  ++ + E+G+  I+P+   R T    +  +R  T    A EQC+ L LP +
Sbjct: 89  LIRRG-FEDALRMACELGVDEIQPLRADRSTPQAEHRPERWATILQEAVEQCERLWLPTL 147

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPN-VAILIGPEGGYHSE 203
            P       L  W ++   V    T  ++    +  L+   +    V +L+GPEGG+ + 
Sbjct: 148 KPACK----LAQWPNSSDPVAVGVTRRADTPALRDWLNQTTNCNGMVWLLVGPEGGWSNA 203

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQ 238
           E E L       P+ LG  ILRS TAAV  ++ LVQ
Sbjct: 204 E-EQLSITREWQPVHLGSSILRSSTAAVRGSVELVQ 238


>gi|93006276|ref|YP_580713.1| hypothetical protein Pcryo_1450 [Psychrobacter cryohalolentis K5]
 gi|92393954|gb|ABE75229.1| protein of unknown function DUF558 [Psychrobacter cryohalolentis
           K5]
          Length = 299

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 47/254 (18%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           H+   VLR   GD  +LF+G  GE+  +I  + K           S T   +   IF+ I
Sbjct: 44  HHWCRVLRANIGDKGILFDGFGGEYQVQILTISKK---NATVTLLSHTNNDNSAPIFTKI 100

Query: 90  -----KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQC 138
                +  R+DY IQKS E+G+ AI+ + + + +           +   +   I+A EQC
Sbjct: 101 GLVMSRGERMDYAIQKSTELGVTAIQLLSSHHGEVNLKPAQVEKKLAHWQQVAIAACEQC 160

Query: 139 ---------------DILTLPFIYPPTTLEFLLKNW---------------DHNCQIVFA 168
                          D L       P  +E  + +                  + ++  +
Sbjct: 161 GLNRPPLIIAPIPINDWLKPITTTTPVKIEATISSMVTTLSQDAYYQVLQQPADLRLQLS 220

Query: 169 DETCGSENSLEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
               G     + L ++    +P + +LIGPEGG  + E      + F  P  +G R+LR+
Sbjct: 221 VPAAGQPAMPDSLLSVLQQPVPYIELLIGPEGGLSANECAQAADVGF-EPWQIGTRVLRT 279

Query: 227 DTAAVAAMALVQAI 240
           +TA V A+A +QA+
Sbjct: 280 ETAPVVALATLQAL 293


>gi|237737740|ref|ZP_04568221.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419620|gb|EEO34667.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 237

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 15/216 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVE--YQSRSQTKQSD 81
            GD  H L +V R+K  + +   +G + E+L +++ + K S+   ++  ++ R  TK   
Sbjct: 21  KGDVNH-LKNVFRVKIDEKVRAVDG-EKEYLCRVAELDKKSVTLVIDEIFEDRFSTKVK- 77

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDI 140
           +      +K +++D  IQK  E+G+  I P+ T R         D+       A +QC  
Sbjct: 78  IDAAIGILKNDKMDLTIQKLTEIGINKIIPLSTKRGVAKVSEKKDKWDLIVREALKQCQG 137

Query: 141 LTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPE 197
           +    I   T +E L L+++D    +V     C  E +L+ L       + +V  ++GPE
Sbjct: 138 VKPLIIDEVTKIEKLKLEDYD----LVIVPYECEDEYTLKNLLRKQTKELKSVLYIVGPE 193

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GG+  EE E L        ++LG RILR++TA++  
Sbjct: 194 GGFDIEEIEYLKQ-KGANIVTLGKRILRAETASIVV 228


>gi|294793688|ref|ZP_06758825.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44]
 gi|294455258|gb|EFG23630.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44]
          Length = 252

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R  M++   +   + + G +       GK+
Sbjct: 10  MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEVDGKA 67

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               +EY   +      +  + S +K  +L++++QK+ E+ +  I  V     + +Y + 
Sbjct: 68  QAKLIEYVEGNLASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 126

Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R     + AA+QC    LP +    TL   L       ++V  +   G   ++
Sbjct: 127 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 186

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMA 235
            L+ LH+   + +V I IGPEGGY  +EKE    + +    +SLG  ILR++TAA+ ++A
Sbjct: 187 VLKTLHSDKSVTDVLICIGPEGGY--QEKEINAIIKYGGKSVSLGNTILRAETAAIGSLA 244

Query: 236 LVQ 238
           +++
Sbjct: 245 MIR 247


>gi|87302174|ref|ZP_01084999.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701]
 gi|87283099|gb|EAQ75055.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701]
          Length = 261

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 19/247 (7%)

Query: 6   HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L+RL +    L   T    + ++  YL+ VLR   G+   + +G    W S +   G  
Sbjct: 4   ELRRLLIAPERLAAGTTLALAPEESRYLSRVLRYGPGERFAVVDGWGQLW-SAVLLDGPQ 62

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDY--MIQKSVEMGMGAIRPVITRY-TQNTH 121
            R +       Q + +   ++   +   RLD+  +++ + E+G+  ++P++  +  +   
Sbjct: 63  ARLEQPLGQPLQRQAAASPWLELAVAIPRLDFDVVVRMACELGVDRLQPLVAEHGARRGS 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           +   R +     A EQC+ L LP +  P  LE +    +    +     T  +E  L   
Sbjct: 123 WKASRWQAILREACEQCERLWLPQLLEP--LEAITYLGETRAALALLASTREAELPLLG- 179

Query: 182 HAIAHIP---------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            A+A  P          VA+ IG EGG+ S  +           +SLGP ILR+ TAAVA
Sbjct: 180 TALAQAPADPLAGAMDGVALAIGAEGGW-SPAEGAAAQAAGWQAVSLGPHILRTSTAAVA 238

Query: 233 AMA-LVQ 238
            +A LVQ
Sbjct: 239 GLASLVQ 245


>gi|42524645|ref|NP_970025.1| hypothetical protein Bd3271 [Bdellovibrio bacteriovorus HD100]
 gi|39576855|emb|CAE78084.1| Conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 253

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R +++     + Q   +GD +H++  V R + G    +       +  ++++V K   
Sbjct: 1   MRRYWIEKKDLFQDQVNFTGDVFHHIFDVCRQEIGSKFEVLTEDSKAYFVEVTHVSKKNA 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R     K+  +  + S  +   +D +++K+VEMG+ +I+P  + ++      +
Sbjct: 61  TARVLEERIIPALKEPHLHLVLSLSRFPVMDAIMEKAVEMGVTSIQPFFSEFSFLRKGEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADE---TCG 173
            +    DR      SA +Q     L  ++P    E +  L N + +   +FA E   T  
Sbjct: 121 LSDNKTDRWDKIVKSATQQSGRGDLMKVHPAIPFEKISDLINRNGSGVGLFAYEGPSTLS 180

Query: 174 SENSLEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            +  + K+ A   A I +V I++G EGG+   E E    L  + P++LGP++LR +TA +
Sbjct: 181 IKEYVSKVKADHPAGIKDVWIIVGSEGGFSHREVEEFQKLG-LHPVTLGPQVLRVETACM 239

Query: 232 AAMALVQ 238
             +++++
Sbjct: 240 TLVSVLK 246


>gi|160947756|ref|ZP_02094923.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270]
 gi|158446890|gb|EDP23885.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270]
          Length = 242

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIR- 66
           R F D  + +  + K  GD Y+++  VLR+ E + I +     GE ++  I    K I  
Sbjct: 3   RFFTDESI-LDGKVKIYGDDYNHIKKVLRITEDEKIEVVVL--GELYIGNIEICDKYISV 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
           + +E  S +   +  +  +    K  ++D ++QK+VE+G+  I      R ++    +  
Sbjct: 60  YNLEKISENTESKIKIHLLQCLAKGEKMDLIVQKAVELGVYDITLVNSKRCIVKFDEKKE 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--ADETCGSENSL 178
           +  ++R++  +  A++Q   L +P I      + ++     N  +V    D+     + +
Sbjct: 120 NKKIERLQKISYEASKQSKRLIVPKINELIQFKDIINFVGDNYLLVAYEEDKNISLRDVI 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            ++       ++ ILIG EGG+  EE E L +      + LG RILR++TA +  ++++Q
Sbjct: 180 TRIKEENSCKDIYILIGSEGGFEREEVEFLTN-NGAFSIGLGARILRTETAGINLLSILQ 238


>gi|300813571|ref|ZP_07093902.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512319|gb|EFK39488.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 230

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 34/223 (15%)

Query: 25  SGDQYHYLAHVLRMKE--------GDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
           + +  H+L +V+R+K+         D I+LFN KD   + K                 S 
Sbjct: 17  NKENLHHLKNVIRIKDDEDFSVVFNDKIILFNLKDDRLIYKKEIFD------------SN 64

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMD----RVRTYT 131
                +   F  +K ++ + +I+   E+G+    P+I  R   N    +D    R +   
Sbjct: 65  EPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCVSNISDKVDKKIQRWQKIA 124

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNV 190
            SAA Q     +P ++ P  ++ + KN+  +  + + DE     ++  EKL       N+
Sbjct: 125 KSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDERNLFFKDIKEKLSK-----NL 179

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           AI++GPEGG    E E L        +SLG RILR++T++V  
Sbjct: 180 AIIVGPEGGISKREIEVLKD---AHRISLGKRILRAETSSVVG 219


>gi|297623572|ref|YP_003705006.1| hypothetical protein Trad_1341 [Truepera radiovictrix DSM 17093]
 gi|297164752|gb|ADI14463.1| protein of unknown function DUF558 [Truepera radiovictrix DSM
           17093]
          Length = 237

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 20/242 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M++H    R+FV  P     +   +G +  +LA VLR++ G  +  F+G   E    +  
Sbjct: 1   MRVH----RVFV--PHLAAGERVLTGREAQHLAQVLRVRPGARVRAFDGAGLEADGTVRE 54

Query: 61  VGKSIRFKVEYQS---RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-- 115
           V   +R  +E  +   R       V    + +K ++L  +++++ E+G    RP ++R  
Sbjct: 55  V-TGLRVTLELGAPYAREVEAALRVTLAVALLKGDKLAEVVRRATELGAVGFRPFVSRRC 113

Query: 116 -YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              + +   + R+R     AA+Q     +P +     L  L            A  T G 
Sbjct: 114 DVRELSANKLARLRRVAQEAAKQSGRSVVPPVAEAAPLAHLSLPAPTLVAHPSAPRTLG- 172

Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
               E L A+   P  + +L GPEGG   +E   L       P+ LG RILR++TA VA 
Sbjct: 173 ----ETLAALTPPPTALTVLTGPEGGLTEDELAALTER-GAHPIRLGARILRAETAPVAL 227

Query: 234 MA 235
            A
Sbjct: 228 TA 229


>gi|126700066|ref|YP_001088963.1| hypothetical protein CD2449 [Clostridium difficile 630]
 gi|254976043|ref|ZP_05272515.1| hypothetical protein CdifQC_12049 [Clostridium difficile QCD-66c26]
 gi|255093431|ref|ZP_05322909.1| hypothetical protein CdifC_12334 [Clostridium difficile CIP 107932]
 gi|255101609|ref|ZP_05330586.1| hypothetical protein CdifQCD-6_12419 [Clostridium difficile
           QCD-63q42]
 gi|255307478|ref|ZP_05351649.1| hypothetical protein CdifA_12867 [Clostridium difficile ATCC 43255]
 gi|255315176|ref|ZP_05356759.1| hypothetical protein CdifQCD-7_12527 [Clostridium difficile
           QCD-76w55]
 gi|255517845|ref|ZP_05385521.1| hypothetical protein CdifQCD-_12086 [Clostridium difficile
           QCD-97b34]
 gi|255650961|ref|ZP_05397863.1| hypothetical protein CdifQCD_12291 [Clostridium difficile
           QCD-37x79]
 gi|260684030|ref|YP_003215315.1| hypothetical protein CD196_2295 [Clostridium difficile CD196]
 gi|260687690|ref|YP_003218824.1| hypothetical protein CDR20291_2342 [Clostridium difficile R20291]
 gi|115251503|emb|CAJ69336.1| putative methyltransferase [Clostridium difficile]
 gi|260210193|emb|CBA64400.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213707|emb|CBE05588.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 252

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 22/227 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQ 79
            G+   +++ VLR K G+ + + +  + E++ +I  + KSI       KV+    S+ K 
Sbjct: 21  EGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKSIVNLEILEKVDINRESELK- 79

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN------MDRVRTYTIS 133
             V+      K  +++ ++QK  E+G+  I  V T+ +     +       +R       
Sbjct: 80  --VRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVDDKKEDKKFERWERIIYE 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPN 189
           AA+Q     +P +    + +  L++   N   +   E   +E ++   HA+    ++I +
Sbjct: 138 AAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYE---NERTVSIKHALKKCDSNIDS 194

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           V I IGPEGG+  EE E +        +SLGPRILR++TA+V A  +
Sbjct: 195 VGIFIGPEGGFSEEEIEQIQK-NNCNVVSLGPRILRTETASVVASTI 240


>gi|167754795|ref|ZP_02426922.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402]
 gi|237735918|ref|ZP_04566399.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705627|gb|EDS20206.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402]
 gi|229381663|gb|EEO31754.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 245

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 17/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  L  K Q     D  H++  V+R   GD I+  +     +   I  +   + 
Sbjct: 1   MQRYFINEDLTSKQQLILPDDDLHHVKKVMRNINGDEIICIDNAGQVYYGVIEDIEIGL- 59

Query: 67  FKVEYQSR-SQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
             V+   R  +  + DV+   +++  K ++ + ++QK+ E+G+  I P+ T+        
Sbjct: 60  --VKIDKRLEENNELDVEITLVYALPKGDKFELVLQKATELGVKRIVPIQTKRCVVKMDE 117

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176
           Q     + R R     AAEQ     +P I     LE L +   DHN  + F +     E+
Sbjct: 118 QKFAKKITRYRKILKEAAEQSWRNFIPEITNVIKLEQLDQYLGDHNL-VAFEELAKQGEH 176

Query: 177 SLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            + K  L  ++    + I++G EGG+  +E E ++ L  +   SLG RILRS+TA +  +
Sbjct: 177 MVLKQTLDQLSSGDKITIVVGSEGGFELDEIEMMNKLG-IKACSLGKRILRSETAPLYFL 235

Query: 235 ALV 237
           +++
Sbjct: 236 SVI 238


>gi|323359828|ref|YP_004226224.1| hypothetical protein MTES_3380 [Microbacterium testaceum StLB037]
 gi|323276199|dbj|BAJ76344.1| uncharacterized protein conserved in bacteria [Microbacterium
           testaceum StLB037]
          Length = 244

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 27/235 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+ + V R++  + + L +G+ G WL+ +       +  V   +R        ++
Sbjct: 22  TGSEAHHASAVRRVRVDEAVTLGDGR-GTWLTGLVTAASPKQVDVRITAREDVPAPSPRF 80

Query: 85  IF--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQ 137
           +   +  K +R +  +Q + E+G+ AI P      ++R+       + R RT    AA+Q
Sbjct: 81  VLVQALAKGDRDELAVQAATELGVDAIVPWQASRSVSRWDAKAEKGLARWRTIVREAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSENSLEKLHAIAHIP----N 189
                +P +      E L +  D         VF  E     ++  +L A+A       +
Sbjct: 141 AHRAWIPEV------EGLARTADLVRLAATSQVFVLEP----SAPARLTAVATEASDGRD 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V +++GPEGG   EE   L        + LG  +LR+ TA  AA++++ A  G W
Sbjct: 191 VVLVVGPEGGIAPEELSALER-AGARQVRLGETVLRTSTAGAAAISVLSAAHGRW 244


>gi|329924040|ref|ZP_08279303.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5]
 gi|328940879|gb|EGG37187.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5]
          Length = 256

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQSDV 82
           +GD   ++A V+R + GD +++ +G   E L +I  +     F V  E    SQ  +  V
Sbjct: 19  TGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSVFAVVIEPMEMSQEPRLQV 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               S  K ++++ +IQK  E+G  +  P ++  T      +     ++R R     AAE
Sbjct: 79  SIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAKKEGKRLERWRKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSE-------NSLEKLHAIAHIP 188
           Q     +P +  P T + LL  +     + F  ++  GS+        + + L   A   
Sbjct: 139 QAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLRDVLKPFAEQALRESAKPA 198

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           ++ +++GPEGG+ +EE+           + LG RILR +TA + A+A
Sbjct: 199 SLLLVVGPEGGF-TEEECRAAEAAGAVAVGLGRRILRCETAGMTALA 244


>gi|218262623|ref|ZP_03477011.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223272|gb|EEC95922.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii
           DSM 18315]
          Length = 232

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 23/218 (10%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+ EGD ILL +GK   + + IS    K     + E   +      ++  
Sbjct: 18  EEAGHCIRVLRLTEGDEILLTDGKGSFFKAAISRAHPKHCEVNILEQWEQPALWNFNLHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R+++  +K+ E+G+ AI  +  R+++       R+    +SA +Q    TL
Sbjct: 78  AVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIKPARLEKILVSAMKQSQKATL 137

Query: 144 PFIYPPT------TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIG 195
           P +   T      +L F  + +  +C           E  ++ L    + P  N  +LIG
Sbjct: 138 PELNGMTDFRTFVSLPFAGRKFIAHC-----------EEGVKPLLKQTYHPGENALVLIG 186

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           PEG +  EE        F  P+SLG   LR++TAA+ A
Sbjct: 187 PEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVA 223


>gi|110638000|ref|YP_678207.1| 16S ribosomal RNA methyltransferase RsmE [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110280681|gb|ABG58867.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 234

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 109/217 (50%), Gaps = 13/217 (5%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFSP 88
           ++  VLR+KEGD I + NG      ++I+    +   +K+ E Q  ++   + +    +P
Sbjct: 22  HVVKVLRLKEGDAITVTNGNGIVVSAQITKADHRKCGYKIIEEQKLNKRSAARIHIAIAP 81

Query: 89  IKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            K  +R++++++K  E G+ A   V+T +++  +  + ++     +A +Q     LP   
Sbjct: 82  TKNIDRMEWLVEKCTEFGIDAFSFVLTEHSERKNLPVAKLEKTAFAAIKQSGQPFLPHFS 141

Query: 148 PPTTLEFLLK----NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
              +    L+    ++D+   I   DE    ++++ KL  +    +  +LIGPEG +  +
Sbjct: 142 ELLSFTAFLQSDFSDYDYKL-IACLDE--APKSTILKL--VQPAKSCLVLIGPEGDFTQQ 196

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E  +     FV  +SLG  ILR++TAA+A+  ++  I
Sbjct: 197 EVRSAVEKGFV-KISLGNSILRTETAAIASCHILNLI 232


>gi|227890818|ref|ZP_04008623.1| protein of hypothetical function DUF558 [Lactobacillus salivarius
           ATCC 11741]
 gi|227867227|gb|EEJ74648.1| protein of hypothetical function DUF558 [Lactobacillus salivarius
           ATCC 11741]
          Length = 243

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 23/243 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62
           ++R F D    I T+ + + + Y +   VLRMK GD   L +  D E + K+       G
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDIFELVD--DVEVVHKMEITKIEDG 56

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           K+    VE         +DV       K ++ D+++QK  EMG       +  Y+     
Sbjct: 57  KAKATSVEVIPSDVELPADVTIACGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWD 116

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173
            + +   + R++    SAAEQ     +P +    T    LK+ D   ++ +IV  +E+  
Sbjct: 117 KKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172

Query: 174 SENSLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              S      +   P N+  + GPEGG   +E E L +  F+    LGPRI+R++TA + 
Sbjct: 173 KGESGNLFKILNKKPSNIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231

Query: 233 AMA 235
            +A
Sbjct: 232 FLA 234


>gi|302380721|ref|ZP_07269186.1| RNA methyltransferase, RsmE family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311664|gb|EFK93680.1| RNA methyltransferase, RsmE family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 241

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 89  IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
           +K+++ +Y+IQK+ E+G+  I      R V+    +  +   DR     + +++Q     
Sbjct: 84  LKSDKNEYIIQKATELGVNKIVFVETERTVVKLDDKKWNKKKDRFEKIALESSKQSKRTV 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I     +   +KN  +   +VF +     + S +   + +   ++ I IGPEGG   
Sbjct: 144 IPEIEGLIKIN-EIKNTSNCLNLVFYE---NEKESFKSFLSNSKKKDINIFIGPEGGLSE 199

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  + L S  F   +SLG RILR+DTA + A++++Q   GD
Sbjct: 200 DNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQYELGD 239


>gi|299144167|ref|ZP_07037247.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518652|gb|EFI42391.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 238

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 15/217 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83
           S +  H+   VLR++E + I+     +G + +   S  G  I  K + +  S  ++SDV+
Sbjct: 17  SKENSHHYKTVLRIRE-EEIVEVGANNGVFKAIFDSCCGDFIILK-KVEEVSAERESDVK 74

Query: 84  YIF--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136
            I     +K +++D  ++ SVE+G+  I P     V+ +     +  + R +    +AA+
Sbjct: 75  LILLQGILKGDKMDQALKSSVEVGVCEIYPLNTKRVVAQIDHKEYKKVQRWQRVVEAAAK 134

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q     +P +  P  LE + +  ++   IV  +    +E+    +       NV ++IGP
Sbjct: 135 QSKRDYIPRVNTPIDLEGIEEILENRELIVPYE----NEDDDRLVDIKLENKNVILVIGP 190

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           EGG+   E + L SL     +SLG RILR++TAAV A
Sbjct: 191 EGGFEETEIDYLKSLG-AKIVSLGNRILRAETAAVCA 226


>gi|289549080|ref|YP_003474068.1| hypothetical protein Thal_1310 [Thermocrinis albus DSM 14484]
 gi|289182697|gb|ADC89941.1| protein of unknown function DUF558 [Thermocrinis albus DSM 14484]
          Length = 247

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 14/156 (8%)

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHY---NMDRVRTYTISAAEQCDILTL 143
           P++  ++D++++K  E+G   + P+++ R  QN        +R R    S+ +QC     
Sbjct: 88  PVEIGKMDFIVEKVSEVGAYQLTPLLSSRSFQNLQALEKRYERWRRIAFSSFKQCGRPIP 147

Query: 144 PFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
             I P T LE      D  C+  +    ++ G E  L +++ +  +  V +++GPEGG+ 
Sbjct: 148 LEIAPVTHLE------DLKCRGGVCMVLDSFGGEIWLSEVN-LKDVKEVHLVVGPEGGFS 200

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +E + L    F+ P+ L P  LRS+TAAV A+ LV
Sbjct: 201 EKEVQLLREKGFL-PVRLRPYTLRSETAAVLAVGLV 235


>gi|332293484|ref|YP_004432093.1| protein of unknown function DUF558 [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171570|gb|AEE20825.1| protein of unknown function DUF558 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 234

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 10/211 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           D+  ++  VLR K GD I L NG    + + ++       R ++E  S  + +   +   
Sbjct: 21  DESKHVIRVLRKKTGDAIHLTNGHGYLFNAIVAEENPNKCRLQIESYSYQEPRNYKLHLA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P++  +++      +R      SA +Q     LP
Sbjct: 81  VAPTKLNDRFEWFLEKATEIGITEITPLLCDHSERKVIKEERFMKIIQSAMKQSLHYHLP 140

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA--ILIGPEGGYHS 202
            +   T+    + + +H    +   E    E+  + L      PN +  ILIGPEG +  
Sbjct: 141 KMNALTSFSDFVGHQNHEDTFIAHCEDLKKESLKDYLK-----PNKSYTILIGPEGDFSP 195

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            E E L     + P+SLG   LR++TAA+ A
Sbjct: 196 AEIE-LALKQGIIPVSLGKSRLRTETAAIVA 225


>gi|260590983|ref|ZP_05856441.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319]
 gi|260536848|gb|EEX19465.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319]
          Length = 255

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 19/221 (8%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ--TKQSDVQYIFSPIK- 90
            VLR+KEGD I L +G+   + +++S       F    Q   Q  T    +    +P K 
Sbjct: 28  RVLRLKEGDEIFLMDGEGSFYQAEVSLATSKKCFYTIKQVLKQEPTWCGKIHLAIAPTKD 87

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             R+++M++K+ E+G   I  +  ++++      DR+    ISA +Q      P +   T
Sbjct: 88  MGRMEWMVEKATEIGFDEITFLNCKFSERKVLRTDRIEKIVISAVKQSHKAWKPVVNDMT 147

Query: 151 TLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIP-----NVAILIGPE 197
           +    + N   N Q       C SE   +          H +  I      ++ +L+GPE
Sbjct: 148 SFCKFIDNHKCNGQKYICH--CYSEIDRDDFFTLIDTFAHNVQDIKPSIGNDITVLVGPE 205

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           G +  EE        F + ++LG   LR++TA ++A+ + Q
Sbjct: 206 GDFSIEEVRYAIDHGFKS-VTLGNSRLRTETAGLSAVMMSQ 245


>gi|217964384|ref|YP_002350062.1| protein YqeU [Listeria monocytogenes HCC23]
 gi|217333654|gb|ACK39448.1| protein YqeU [Listeria monocytogenes HCC23]
 gi|307571051|emb|CAR84230.1| conserved hypothetical protein [Listeria monocytogenes L99]
          Length = 255

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 15/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     A E
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEATE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L ++     P  ++L 
Sbjct: 140 QSHRTVIPEVHYAASFKELMYDHVHYDYVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVAAMA 235
             GPEGG    EKE LH       L+ LGPRILR++TA +  ++
Sbjct: 200 IFGPEGGI--SEKELLHLQEVNAKLAGLGPRILRTETAPLYVLS 241


>gi|300214541|gb|ADJ78957.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 243

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 23/243 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----G 62
           ++R F D    I T+ + + + Y +   VLRMK GD   L +  D E + K+       G
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDAFELVD--DAEVVHKMEITKIEDG 56

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           K+    VE         S+V       K ++ D+++QK  EMG       I  Y+     
Sbjct: 57  KAEATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWD 116

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCG 173
            + +   + R++    SAAEQ     +P +    T    LK+ D   ++ +IV  +E+  
Sbjct: 117 RKRSSKKVQRLQKIARSAAEQSHRTKIPEV----TFVEKLKDIDFEKNDARIVAYEESAK 172

Query: 174 SENSLEKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              S      +   P+  I I GPEGG   +E E L +  F+    LGPRI+R++TA + 
Sbjct: 173 KGESGNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLY 231

Query: 233 AMA 235
            +A
Sbjct: 232 FLA 234


>gi|116510923|ref|YP_808139.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106577|gb|ABJ71717.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 250

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 17/223 (7%)

Query: 30  HYLAHVLRMKEGDNILLF--NGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           H++  V+R + GD + L    GK G  LS+I S   +S+R  +E  + S      V    
Sbjct: 27  HHIFTVMRAQAGDQLRLVFEEGKIG--LSEIISPADQSVRL-IELLTDSSELPVQVTVAV 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTISAAEQCDI 140
              K ++LD++++KS E+G  AI   P     ++  H  +    +++    + AAEQ   
Sbjct: 84  GFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKLTKKQEKLEKVALGAAEQSRR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIGP 196
             +P I        L + +    Q++ A E      E S+ K  L  ++    V I+ GP
Sbjct: 144 QLIPKIQLFDQFSRLTEQFSDFDQVLVAYEESAKMGETSMFKQALTELSANQKVLIIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           EGG   +E     +L     + LGPRILR++TA + A++ + A
Sbjct: 204 EGGISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSSISA 245


>gi|212702535|ref|ZP_03310663.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098]
 gi|212673976|gb|EEB34459.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098]
          Length = 245

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 10/217 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G +  +L  VLR+  G+ +LL +G+       I+   K   R  ++ +  +   +S    
Sbjct: 21  GQEAKHLVQVLRLAPGEEVLLLDGQGRSGRFAIAETAKKKARLILQEEQMAPAPESRAVM 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYTISAAEQCDILT 142
             +  K  R  + ++K+VE+G  AI      ++Q        +  R   I+ A+QC    
Sbjct: 81  ALAFSKAVRRGFFMEKAVELGAHAIWLWQGDHSQGKLPADAAESCRGQLIAGAKQCGNPW 140

Query: 143 LPFIYPPT--TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGG 199
           LP +   T    E + +    +C+I+   E   + N L     +A  P   + +IGPEGG
Sbjct: 141 LPQVEALTGGVDELVRRAATVDCRIL-PWEMQDTVNMLTP--RLAGRPGTTVYVIGPEGG 197

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +   E ++L +  F T +SLG R+LR +TAA   + L
Sbjct: 198 FSQRELDSLRAAQF-TFVSLGARVLRCETAATLCLGL 233


>gi|310643066|ref|YP_003947824.1| protein [Paenibacillus polymyxa SC2]
 gi|309248016|gb|ADO57583.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 254

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 17/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+     ++     +G+   ++A V+R + GD I++ +G   E L+ +  + +   
Sbjct: 1   MQRYFIPAEQFLEDHVIVTGEDARHIAKVMRGRSGDKIIVSDGVSREALAALDTIEQDHV 60

Query: 67  FKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                +    T +  VQ     S  K ++++ ++QK  E+G     P ++  T      +
Sbjct: 61  KATIIEPLEMTSEPYVQITIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P +  P T + LL ++     I +  E        
Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEVSAPLTWKELLASFAGYDLICYCYEKEQGRQLR 180

Query: 179 EKLHAIA------HIPNVAILIGPEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAV 231
           + +   A        P V +++GPEGG+   E E+L +         LG RILR++TA +
Sbjct: 181 DVIQPFAGHWASTDKPRVLVVVGPEGGFT--EAESLEAEQAGAQSTGLGRRILRAETAGM 238

Query: 232 AAMALV 237
            A+A +
Sbjct: 239 VALACI 244


>gi|169824474|ref|YP_001692085.1| hypothetical protein FMG_0777 [Finegoldia magna ATCC 29328]
 gi|167831279|dbj|BAG08195.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 241

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 89  IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
           +K+++ +Y+IQK+ E+G+  I      R V+    +  +   DR     + +++Q     
Sbjct: 84  LKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDKKWNKKKDRFEKIALESSKQSKRTV 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I     +   +KN  +   +VF +     + S +   + +   ++ I IGPEGG   
Sbjct: 144 IPEIEGLIKIN-EIKNTSNCLNLVFYE---NEKESFKSFLSNSKNKDINIFIGPEGGLSE 199

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  + L S  F   +SLG RILR+DTA + A++++Q   GD
Sbjct: 200 DNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQYELGD 239


>gi|325280830|ref|YP_004253372.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter
           splanchnicus DSM 20712]
 gi|324312639|gb|ADY33192.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter
           splanchnicus DSM 20712]
          Length = 234

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 11/214 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQTKQS 80
           + D+  +   VLR+  G+ + L +GK G W    + +    G  IR   + +     +  
Sbjct: 17  NADESRHCVRVLRLGAGEAVSLVDGK-GTWYEGVIERAEVRGCEIRI-TDRRELYGRRNF 74

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R+++M++K  EMG+  I  +   +++      +R+    ++A +Q  
Sbjct: 75  HLHLAVAPTKNIDRIEWMLEKCTEMGIDEITLLHAAHSERKVVKEERLEKVIVAAMKQSL 134

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP + P T    L+ +     + + A    G +  L++++      +V ILIGPEG 
Sbjct: 135 KAYLPRLNPMTDFRQLVTSCREPHKFI-AHCNEGDKKRLDEVYRPGE--DVVILIGPEGD 191

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +  EE        FV P++LG   LR++TA + A
Sbjct: 192 FSEEEVVLARHHGFV-PVTLGTSRLRTETAGIVA 224


>gi|288802568|ref|ZP_06408007.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18]
 gi|288335096|gb|EFC73532.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18]
          Length = 244

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV-----QYIFSP 88
            VLR+KEGD + L +G+   + ++++ V      K  Y  +   KQ  V         +P
Sbjct: 28  RVLRLKEGDEMFLMDGEGCFYKAEVALVSSK---KCLYTIKETLKQEPVWRGKIHLAIAP 84

Query: 89  IK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            K   R+++M +K+ E+G   I  +  ++++      DR+    ISA +Q      P + 
Sbjct: 85  TKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRADRIEKIVISAVKQSRKGWKPVVN 144

Query: 148 PPTTLEFLLKNWDHN-----CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P T     ++N  +N     C             ++ +    +   ++ +L+GPEG +  
Sbjct: 145 PMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQEEQPSSAEDITVLVGPEGDFSI 204

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +E        F + + LG   LR++TA ++A+ + Q
Sbjct: 205 DEVRFALEHGFESVI-LGNSRLRTETAGLSAVMMSQ 239


>gi|83589451|ref|YP_429460.1| hypothetical protein Moth_0587 [Moorella thermoacetica ATCC 39073]
 gi|83572365|gb|ABC18917.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 246

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 20/232 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
            G+  H+   VLR+++G++I L +     + ++I  + +  R     +    + +  V+ 
Sbjct: 20  EGENAHHAIRVLRLRQGESITLADSNGQGYRAEIVAITEG-RVAAAIKDPLDSPEPRVRV 78

Query: 84  --YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             Y   P K +++D +I+K  E+G+  I  + T  +      Q      +R +    +AA
Sbjct: 79  TLYQGWP-KGDKMDLIIEKCTELGVDRIVVLATERSIPRPDQQTCARRRERWQQKAHAAA 137

Query: 136 EQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVA 191
            Q     +P +  P  L E L+K       +V  +E    E + +    +A +P    +A
Sbjct: 138 RQSRRHRIPVVDGPLGLAEALVKLRPDTLLLVPWEE----ERTRDLKSILATVPADRELA 193

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +LIGPEGG    E +       + PL+LGPRILR++TA +A +A +    G+
Sbjct: 194 LLIGPEGGLSRAEVDLACRFGGL-PLTLGPRILRTETAGLACLAAIMYAMGE 244


>gi|120436000|ref|YP_861686.1| 16S ribosomal RNA methyltransferase RsmE [Gramella forsetii KT0803]
 gi|117578150|emb|CAL66619.1| protein containing DUF558 [Gramella forsetii KT0803]
          Length = 237

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 9/211 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           D+  ++  VLR  EGD + + NG +G  ++   I    K    KV    +       V  
Sbjct: 21  DESKHIVKVLRKSEGDILNITNG-NGLLINAEIIKADIKQCLAKVISVEKQPAPPYYVHM 79

Query: 85  IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           I +P K N R ++ ++K++E+G+  I P+I  +++     ++R      SA +Q     +
Sbjct: 80  IVAPTKMNDRYEWFLEKAMEIGVHEITPIICDHSERKVVKLNRFERVLQSAMKQSLHYRM 139

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P +  P    +F+    + +  I   +E  G +N L+  + I    N+ ILIGPEG +  
Sbjct: 140 PKLNDPINFSDFIATEIEGSKYIAHCEEETG-KNYLQ--NEIIPGENINILIGPEGDFSK 196

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           EE E   +  +   +SLG   LR++TAA+ A
Sbjct: 197 EEIEKAINKGW-NAVSLGDSRLRTETAAIVA 226


>gi|154493617|ref|ZP_02032937.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC
           43184]
 gi|154086827|gb|EDN85872.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC
           43184]
          Length = 232

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 29/221 (13%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-----D 81
           ++  +   VLR+ EGD ILL +GK   + + IS          E     Q +Q      +
Sbjct: 18  EEAGHCIRVLRLTEGDEILLTDGKGFFFKAAISRAHPK---HCEVNILEQWEQPALWNFN 74

Query: 82  VQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           +    +P K  +R+++  +K+ E+G+ AI  +  R+++       R+    ISA +Q   
Sbjct: 75  LHIAVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIKPARLEKILISAMKQSQK 134

Query: 141 LTLPFIYPPT------TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAI 192
            TLP +   T      +L F  + +  +C           E  ++ L    + P  N  +
Sbjct: 135 ATLPELNGMTDFRTFVSLPFAGRKFIAHC-----------EEGVKPLLKQTYHPGENALV 183

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           LIGPEG +  EE        F  P+SLG   LR++TAA+ A
Sbjct: 184 LIGPEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVA 223


>gi|225550485|ref|ZP_03771434.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225379639|gb|EEH02001.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 234

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 32/222 (14%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------VQ 83
           H++ +V+RM+  D I++ N           ++ + I  +  + +  +   +D      + 
Sbjct: 22  HHIKNVMRMRLHDEIIVINETQA-------FIAEIINLEPLHATIIKPYFNDCELSTKID 74

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILT 142
              + IK N  ++++QK+ E+G+ +I   I + T N T    +R+ T    A EQ     
Sbjct: 75  LFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNNRISTIIKEACEQARRNY 134

Query: 143 LPFIYPPTTLEFLLK---NWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           L   Y   +   LLK   N+D       N +  F ++     ++ +K         +A++
Sbjct: 135 LVNYYEQFSFSELLKVLLNYDLILVAYENEKQFFLNDVFKENSTYQK---------IALV 185

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           IGPEGG+  EE   L  +  V  +SL   ILRS+TA++  +A
Sbjct: 186 IGPEGGFEQEEIALLKKINNVACISLTKTILRSETASLYLLA 227


>gi|313893412|ref|ZP_07826984.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442053|gb|EFR60473.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 243

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISAAEQC 138
           + S +K  +L++++QK+ E+ +  I  V     + +Y  +     + R     + AA+QC
Sbjct: 78  VQSLLKGEKLEWVLQKATELNVDTIYLVSTANCVAKYDDKKLQSKVSRWEKIMLEAAQQC 137

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAIAHIPNVAILIGP 196
               LP +     L  +L   D   ++V  +   G   + +LE +H+  +I ++ I IGP
Sbjct: 138 GRNQLPTLVVGEKLSQVLAIEDDAFKLVAYENEEGHTIKIALESIHSNQNITDILICIGP 197

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           EGGY  +E   +        +SLG  ILR++TAA+ ++A++Q
Sbjct: 198 EGGYQEKEINAIIE-SGGKSVSLGNTILRAETAAIGSLAMIQ 238


>gi|289423857|ref|ZP_06425650.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus
           anaerobius 653-L]
 gi|289155634|gb|EFD04306.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus
           anaerobius 653-L]
          Length = 258

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 23/257 (8%)

Query: 7   LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           + R FVD    I TQ +     GD   +++ VLR   GD + + +G++ E++ +I  + K
Sbjct: 1   MDRFFVDRE-NIDTQARNLVILGDDVKHISKVLRYSVGDELEVCDGQNKEYICRIDSMDK 59

Query: 64  SIRFKVEYQSRSQTKQSDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVIT 114
           +       + +   ++S ++   Y   P K+ +++ ++QK  E G+  I      R V+ 
Sbjct: 60  TEIGLSIIEEKDVDRESPIRIKLYQGLP-KSTKMEIILQKLTECGVAEIILVNTARSVVN 118

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              + +   +DR +     AA+Q     +P +    + +  L++ + N   +   E  GS
Sbjct: 119 IDDKKSEKKLDRWQRIVYEAAKQSKRGIIPDLKGIYSFKEALRDMEVNDINIMPYEEEGS 178

Query: 175 EN--SLEKLHAIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                L +   I  I        + I IGPEGG+  +E   +        + +GPRI R+
Sbjct: 179 LGIKDLLRSEGIQQIIKENKSATIGIFIGPEGGFTEDENAKVKEAGG-HSVKMGPRIFRT 237

Query: 227 DTAAVAAMALVQAICGD 243
           +TA++ A ++     GD
Sbjct: 238 ETASIVATSICLYELGD 254


>gi|239906459|ref|YP_002953200.1| hypothetical protein DMR_18230 [Desulfovibrio magneticus RS-1]
 gi|239796325|dbj|BAH75314.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 241

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT----KQS 80
           +G +  + A VLR + G+ +  F+G     L +I  VG+  R ++  +S  +T    ++ 
Sbjct: 21  TGGEASHCAKVLRKRPGELVRAFDGTGHHGLFRIETVGRD-RVELIPESLEETPPPARRL 79

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYT---ISAA 135
            +   FS  ++ R D+ ++K+VE+G   I   +    + T   M  D    +T   I+AA
Sbjct: 80  HIAAGFS--RSARRDFFLEKAVELGAAGI---VFWQAERTQGKMPGDPKEAWTAGLIAAA 134

Query: 136 EQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +QC    LP +   P     L K      +     E       L     +A   +   ++
Sbjct: 135 KQCGAALLPTLACVPGGAAGLTKAGQAYPRRFLLWEDPAVSRPLTPTD-LAAAGDTLCVV 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           GPEGG+   E  T+ +  F+ P++LGPR+LR +T
Sbjct: 194 GPEGGFTDAEATTITAAGFI-PVTLGPRVLRWET 226


>gi|125622990|ref|YP_001031473.1| hypothetical protein llmg_0111 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491798|emb|CAL96718.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069731|gb|ADJ59131.1| 16S ribosomal RNA methyltransferase RsmE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 250

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 13/221 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           H++  V+R + GD + L   +    LS+I S   +S+R  +E  + S      V      
Sbjct: 27  HHIFTVMRAQAGDQLRLVFEEGTIGLSEIISPADQSVRL-IELLTDSSELPVQVTVAVGF 85

Query: 89  IKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTISAAEQCDILT 142
            K ++LD++++KS E+G  AI   P     ++  H  +    +++    + AAEQ     
Sbjct: 86  PKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKLTKKQEKLEKVALGAAEQSRRQL 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIGPEG 198
           +P I        L + +    Q++ A E      E S+ K  L  ++    V I+ GPEG
Sbjct: 146 IPKIQLFDQFSRLTEQFSDFDQVLVAYEEAAKMGEKSMFKQALTELSANQKVLIIFGPEG 205

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           G   +E     +L     + LGPRILR++TA + A++ + A
Sbjct: 206 GISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSSISA 245


>gi|153815335|ref|ZP_01968003.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756]
 gi|317501690|ref|ZP_07959881.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088425|ref|ZP_08337340.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847397|gb|EDK24315.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756]
 gi|316896941|gb|EFV19021.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408192|gb|EGG87680.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 255

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 16/224 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK G+++ + +G+   +L  ++ Y        V  +  ++T+      
Sbjct: 20  GADLNHMKNVLRMKVGEDVRINDGQGTTYLCCLNRYEKDQAVLDVFRKLDTETELPSEII 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
           +F  + K +++++++QKSVE+G        A R V+    +      +R +     AAEQ
Sbjct: 80  LFQGLPKGDKMEWIVQKSVELGAHKIVPFSAKRSVVKLDEKKAVKKQERWQLIAKGAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILI 194
                +P +    +    L+  +    ++   E    E   E +  I  I    +V I I
Sbjct: 140 SGRGVIPEVCGVCSFTEALEQAESLDVVLIPYEL--EEGMAETVRVIEQIEPGQSVGIFI 197

Query: 195 GPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  EE E L +      P++LG RILR++TA +  ++++
Sbjct: 198 GPEGGF--EEAEVLRAKEKGARPVTLGKRILRTETAGLTTLSIL 239


>gi|281357011|ref|ZP_06243501.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316569|gb|EFB00593.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 17/214 (7%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           +  +L   LR   GD + L +G+ G  L+ +      +   V  +   + +   + Y   
Sbjct: 22  ESDHLFKTLRAAPGDTVELLDGRGGRALATVQP--GRVLLTVSREQVPEPETGLLLYTAV 79

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           P K  + D +++++ E+G+  IR ++   +       DR  T      +Q     LP I 
Sbjct: 80  PRKA-KFDTLLKQAAELGVREIRLLLCERSVAAPEGSDRWETLLQEGCKQSGNPFLPKIA 138

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEE 204
           PP  L   L  +             G   ++E   A A  P   NVA  +GPEGG+ +  
Sbjct: 139 PPVKLAAALAEFSGT----------GYFGAVENPGAEAPRPAAGNVAWFVGPEGGF-TAA 187

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +E   +   +  L+LGP +LR +TAAV  +A+++
Sbjct: 188 EEEAMAHANIHALNLGPYVLRLETAAVCGLAVLR 221


>gi|217076608|ref|YP_002334324.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho africanus
           TCF52B]
 gi|217036461|gb|ACJ74983.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 226

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 29/217 (13%)

Query: 30  HYLAHV--LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIF 86
           H   H+  +R KE D I   +GK   +  KI+ +GK   F    +S+  +  +     +F
Sbjct: 19  HETVHIKTVRKKENDIIECTDGKGYYYKVKITQIGKKKSFGEILESKYIENNEKTFLSLF 78

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDILTLP 144
           +P  +  RL ++I+KSVE+G+  I    T ++   + + ++++      +A+QC     P
Sbjct: 79  APASRWERLRWLIEKSVELGVDNIYITKTAFSNRDYKDKVEKINMVIRDSAKQCVRFHFP 138

Query: 145 ---FIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              FI       +  KN    D N Q               KL A     +V+I++GPEG
Sbjct: 139 NVDFITFKNIKNYATKNTYFLDFNGQ---------------KLPANID-GDVSIIVGPEG 182

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           G+  EE + L S      + LG +ILR +TAA  A++
Sbjct: 183 GFSKEELDFLFSN--FNAIRLGNKILRFETAAFVALS 217


>gi|258651801|ref|YP_003200957.1| hypothetical protein Namu_1573 [Nakamurella multipartita DSM 44233]
 gi|258555026|gb|ACV77968.1| protein of unknown function DUF558 [Nakamurella multipartita DSM
           44233]
          Length = 259

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G +  + A V R++ G+ ++L +G      + ++  G++ +   V+   R       V  
Sbjct: 37  GPEGRHAAAVRRLRVGEALVLTDGAGRLAAAVVTAAGRAELTLDVQPAHRQPPPDVRVTL 96

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-------RYTQNTHYNMDRVRTYTISAAEQ 137
           + +  K  R +  ++ + E G+ AI P          R        + R R     +A+Q
Sbjct: 97  VQALPKGERGELAVELATEAGVDAIVPWTAQRCMARWRTPDQVDKGVRRWRATARESAKQ 156

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--NVAILIG 195
                +P ++ P T   +         +V        E+S+  L A    P  +V +++G
Sbjct: 157 ARRAFVPPVHEPATTAEVGARLTGATALVL------HESSVTPLAAAGLPPAGDVVLIVG 210

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           PEGG  +EE+ T+      T + LGP++LR+ TA   A+  +  + G W
Sbjct: 211 PEGGL-TEEELTVFGSAGATVVRLGPQVLRTSTAGAVALGALGVLTGRW 258


>gi|332288757|ref|YP_004419609.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis
           UMN179]
 gi|330431653|gb|AEC16712.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis
           UMN179]
          Length = 210

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 45/230 (19%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPI--KTNRL 94
           MK G+ + LF+G +  + + I+ + K  +  V  Q+     ++S +      +  +  R+
Sbjct: 1   MKVGEALELFDGSNHIYPAVITEISKK-QITVALQNAIFDDRESPLNIHLGQVISRGERM 59

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---------TYTISAAEQCDILTLPF 145
           ++ IQKSVE+G+  I P+   +++     +D  R            I+A EQC    +P 
Sbjct: 60  EFTIQKSVELGVKTITPL---WSERCGVKLDAERMEKKIQQWQKIAIAACEQCGRNIIPE 116

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-------AIAHIP-----NVAIL 193
           I P   L+    +W            C   + + KL+       +I  +P      V +L
Sbjct: 117 IRPLMKLQ----DW------------CAENDGMLKLNLHPRASQSIKQLPPPPAAGVRLL 160

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IG EGG   +E E      F T + LG R+LR++TA++ A++ +Q   GD
Sbjct: 161 IGSEGGLSEQEIEQTVQQGF-TEVLLGKRVLRTETASLVAISALQICFGD 209


>gi|116492884|ref|YP_804619.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745]
 gi|116103034|gb|ABJ68177.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745]
          Length = 245

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 23/246 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--S 64
           ++R FV  PL I+ + + S +  H+L  V+R   G ++ + +     +++++   G   +
Sbjct: 1   MQRYFVKQPLKIQAELQLSKEDSHHLIRVMRTDIGQDVEVVDLDGKVFIAEVLKSGSIAT 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQ- 118
           +R K E  ++S     D+       K ++ + +I++  EMG         R  + R+++ 
Sbjct: 61  LRTK-EDITKSVELPVDITIACGISKGDKNEQIIKRGTEMGAKHFIFFESRYSVARWSEP 119

Query: 119 NTHYNMDRVRTYTISAAEQCD---ILTLPFIYPP----TTLEFLLKNWDHNCQIVFADET 171
                + R+R     AAEQ     I T+ FI  P    TT+E  +  ++ + +    DE 
Sbjct: 120 KVEKKLKRLREIAKGAAEQSHRQLIPTVVFIKAPALFETTIEHRMVAYEESAK---QDEH 176

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              ++ L +L A   +  V    GPEGG+  EE +      FV    LGPRILR++TA +
Sbjct: 177 ANFKSLLLQLKAGDQLLAV---FGPEGGFAEEEIQEFTEHQFVLA-GLGPRILRAETAPM 232

Query: 232 AAMALV 237
             ++ V
Sbjct: 233 YLLSAV 238


>gi|70726340|ref|YP_253254.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447064|dbj|BAE04648.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 250

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 89  IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
           IK ++ +++IQK+ E+G  +       R V+          ++R +     AAEQ   L 
Sbjct: 86  IKADKYEWLIQKATELGADSFIVVEMDRSVVKLTPNKVQKKLERWQKIIKEAAEQSYRLI 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSL--EKLHAIAHIPNVAILIGPEG 198
           +P I   + L  +    +H   I+ A  DE    E SL  E L        + ++ GPEG
Sbjct: 146 IPNIIFKSNLNEIYDTINHYDYILLAYEDEAKRGEVSLFKETLKKFKTNDRILLIFGPEG 205

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G+  +E   L+   F   + LGPRILR++TA + A++ +
Sbjct: 206 GFSEKEITLLNETSF--NVGLGPRILRAETAPLYALSAI 242


>gi|291287099|ref|YP_003503915.1| hypothetical protein Dacet_1187 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884259|gb|ADD67959.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK-SIRFKVEYQSRSQTKQSDV 82
            GD +HYL +V+R K GD I +    D E+    I+ +GK +    VE    ++     +
Sbjct: 17  EGDYFHYLKNVVRAKAGDLIGVL--ADDEYAECTITDMGKRNAVMSVESCRPAKRYTHKL 74

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDI 140
           +     +K   +D+ ++K  E+G   I PVI+  + N      M R    ++ AA Q + 
Sbjct: 75  KVYQCLLKREYMDFAVEKYTELGATEIVPVISERSLNDLKDKTMQRYHDISVKAALQSEN 134

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             LP I+    +  +  +   N  ++F  E C      E+         ++I+IGPEGG+
Sbjct: 135 EQLPVIHDAVGIADIQPDMQSN--LIFY-ERC------EERGCFNTTNEMSIVIGPEGGF 185

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             EE   L    F TP+     IL+++TA+V
Sbjct: 186 TEEEYHMLKDKGF-TPVRPIDNILKAETASV 215


>gi|313618886|gb|EFR90752.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua
           FSL S4-378]
          Length = 255

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           ++R FV++ L       + +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYT 117
            +   V++         ++       K ++L+ +IQKS E+G        A R V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAIAHI--PNVAIL--IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVA 232
              L ++     P  ++L   GPEGG    EKE L        L+ LGPRILR++TA + 
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGIS--EKELLLLQEVNAKLAGLGPRILRTETAPLY 238

Query: 233 AMA 235
            ++
Sbjct: 239 VLS 241


>gi|261405594|ref|YP_003241835.1| hypothetical protein GYMC10_1745 [Paenibacillus sp. Y412MC10]
 gi|261282057|gb|ACX64028.1| protein of unknown function DUF558 [Paenibacillus sp. Y412MC10]
          Length = 256

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV--EYQSRSQTKQSDV 82
           +GD   ++A V+R + GD +++ +G   E L +I  +     F V  E    SQ     V
Sbjct: 19  TGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSVFAVVIEPMEMSQEPLLQV 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               S  K ++++ +IQK  E+G  +  P ++  T      +     ++R R     AAE
Sbjct: 79  SIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAKKEGKRLERWRKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSE-------NSLEKLHAIAHIP 188
           Q     +P +  P T + LL  +     + F  ++  GS+        + + L   A   
Sbjct: 139 QAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLRDVLKPFAEQALRESAKPA 198

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           ++ +++GPEGG+ +EE+           + LG RILR +TA + A+A
Sbjct: 199 SLLLVVGPEGGF-TEEECRAAEAAGAVAVGLGRRILRCETAGMTALA 244


>gi|33863058|ref|NP_894618.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634975|emb|CAE20961.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str. MIT
           9313]
          Length = 258

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 13/215 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYI 85
           D+ HYL  VLR++ G  + L +G    W + +   G  ++      S S Q  +   Q  
Sbjct: 29  DEVHYLRRVLRLRNGQAVALVDGVGHFWEAHLQ-AGDFLKLDTSPSSPSLQQPRHRQQLG 87

Query: 86  FSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            + +   R  + +++ S E+G+  I+P+ + R T        R R     A EQ + L  
Sbjct: 88  LAVVLPKRGFEEVLRMSCELGVNLIQPLRSDRCTPQAEERPLRWRVILREAVEQSEQLWQ 147

Query: 144 PFIYPPTTLEFLLKN-WDHNCQIVFADETCGSEN--SLEKLHA--IAHIPNVAILIGPEG 198
           P + P      L K+  DH    VFA  T   +    L+ L       I  V + IGPEG
Sbjct: 148 PELLPIAEASALWKSPPDHA---VFALATTRRQGLIDLQLLMEGLTPEINQVTVAIGPEG 204

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           G+   E+    +  +V P++LG  ILR+ TAAVAA
Sbjct: 205 GWSPLEECAAEAAGWV-PVALGDSILRTCTAAVAA 238


>gi|237740316|ref|ZP_04570797.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422333|gb|EEO37380.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 235

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 22/219 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87
           +++ +V R ++GD +   +G + E+L +I  +  K I+ K+ E ++   +   ++    S
Sbjct: 23  NHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLDIELDAAIS 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         DR  T    A +QC  +    +
Sbjct: 82  ILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQCQGVVPTVV 141

Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEG 198
                ++ L LK++D       N + VF  +          L  +   P+ +  +IG EG
Sbjct: 142 DEIKKIDKLNLKDYDLVLVPYENEEEVFLKDI---------LRNLKVKPSKILYVIGAEG 192

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G+  EE + L S      +SLG RILR++TAA+    ++
Sbjct: 193 GFEKEEIDFLKS-QGAKIISLGKRILRAETAAIVTGGVI 230


>gi|237756071|ref|ZP_04584649.1| conserved surface protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691764|gb|EEP60794.1| conserved surface protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 236

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 112/225 (49%), Gaps = 24/225 (10%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS--IRFKVEYQSRSQTKQSDVQY 84
           +Y++   VLR+K+ D ++  N  DG  +L+K+  + K+  I   +E     + +     Y
Sbjct: 21  EYNHAVKVLRVKQND-LIEINTFDGNVYLAKVEDISKNQLIALSIEKIPIKEEEFKITLY 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCDI 140
              P + +++D +I+   ++G+  + PVI++ +    Q+    +++ +   +++ +QC  
Sbjct: 80  QCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDVAKKLEKWQRIALNSIKQCK- 138

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIG 195
              P I       + +K+ D   ++VF ++        EK + I  + N     V++ IG
Sbjct: 139 RPFPLIIEKPIKLYNIKSNDE-LKVVFYEK--------EKQNKIKMLMNKTFKTVSVFIG 189

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            EGG+  EE E L    F+ PLSLG  IL+ +TA +  +  ++ I
Sbjct: 190 NEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233


>gi|323345370|ref|ZP_08085593.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093484|gb|EFZ36062.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 248

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVE-YQSRSQTKQSDVQY 84
           D+  +   VLR+K GD   L +G    + ++++    K   + V+    +++T    +  
Sbjct: 21  DEAAHALRVLRLKAGDEFFLMDGAGSFFRAELTVTSAKRCMYAVKAVLPQTKTWNGHIHL 80

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K   R++++++K+ E+G   +  +  R+++       R+    +SA +Q      
Sbjct: 81  AIAPTKMMERMEWLVEKATEIGFDELSLLDCRFSERRQVKTARLEKIVVSAVKQSRKPWK 140

Query: 144 PFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P ++  T  + F+         I    +    E+  +KL   +   +V +LIGPEG +  
Sbjct: 141 PLVHEMTDFKTFVESRQKGRYFIAHCYDDVPKEDLYDKLTKHSGNEDVTVLIGPEGDFSI 200

Query: 203 EEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           EE      H      P+SLG   LR++TA + A+++ Q
Sbjct: 201 EEVNFALEHG---CEPVSLGASRLRTETAGLLAVSMAQ 235


>gi|167847329|ref|ZP_02472837.1| hypothetical protein BpseB_18782 [Burkholderia pseudomallei B7210]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 29/225 (12%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 75  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVR 133

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +     +   R    ++ EQC    LP I P       ++ +D     + A    G+
Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP-------VRGFDAWLDALPATPADGA 186

Query: 175 ENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHS 210
              L    A    A +P      +V +LIGPEGG   +E++   +
Sbjct: 187 LRLLLSPRASVPFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARA 231


>gi|154686804|ref|YP_001421965.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
           amyloliquefaciens FZB42]
 gi|154352655|gb|ABS74734.1| YqeU [Bacillus amyloliquefaciens FZB42]
          Length = 256

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS-IRFKV-EYQSRSQTKQSD 81
           +G+  H++A+V+RM  GD I+  + KDG E L  +  V K  I   + E+   ++     
Sbjct: 22  TGEDVHHIANVMRMSAGDRIICCS-KDGHEALCLLKEVSKDHISCSIAEWTGENRELPLK 80

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135
           ++      K ++L+++IQK  E+G          R V+    +      +R       AA
Sbjct: 81  IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAA 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVA 191
           EQ     +P +    T   LL+  ++   C + + + +   E      +L ++    ++ 
Sbjct: 141 EQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL 200

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E   L     V    LGPRILR++TA + A++ V
Sbjct: 201 IVFGPEGGLTESEVHQLSEKGAVL-CGLGPRILRTETAPLYALSAV 245


>gi|254415665|ref|ZP_05029424.1| conserved hypothetical protein TIGR00046, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177615|gb|EDX72620.1| conserved hypothetical protein TIGR00046, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 295

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 62/288 (21%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI------S 59
           +L+RL +        Q   +  Q HYL  VLR+ EGD  +  +G+   WLS++      +
Sbjct: 9   NLQRLVISPTQRQNQQILLTESQQHYLVRVLRLTEGDRFIAMDGEGNWWLSELMANLTQA 68

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117
            + +SI  + E           +  I +  K +  + +I  + E+G+  I P+ +  T  
Sbjct: 69  TIIESIPIQTELPCA-------ITLIAAMPKGSGFEDIISAATELGVTDIIPIKSDRTIL 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK----------------NWDH 161
             +   ++R R     AAEQ +   +P I  P      +K                N  H
Sbjct: 122 NPSPRKLERWRRIAQEAAEQSERQIVPTIIDPLDFTSAIKQAIDSTTHCYICVARGNVPH 181

Query: 162 --NC--QIVFADETCG----------------SENSLEKLHAIAHIPN----------VA 191
             NC  ++   D   G                ++NS  + +    +P+          +A
Sbjct: 182 LLNCLPKLEVIDPGDGQDKGDEGGFSTIRVTTNDNSETRPYIQNPVPDERSEGSKRSIIA 241

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           I  GPEGG+  +E E   +  F  P+SLG RILR+ TA + A++L+ A
Sbjct: 242 IATGPEGGWTPQEIEQAIAAGF-QPVSLGHRILRAVTAPLMALSLIAA 288


>gi|303233811|ref|ZP_07320465.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4]
 gi|302495245|gb|EFL54997.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4]
          Length = 241

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 89  IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
           +K+++ +Y+IQK+ E+G+  I      R V+    +  +   DR     + +++Q     
Sbjct: 84  LKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDKKWNKKKDRFEKIALESSKQSKRTV 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I     +   +KN  +   +VF +     + S +     +   ++ I IGPEGG   
Sbjct: 144 IPEIEGLIKIN-EIKNTSNCLNLVFYE---NEKESFKSFLYNSKNKDINIFIGPEGGLSE 199

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  + L S  F   +SLG RILR+DTA + A++++Q   GD
Sbjct: 200 DNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQYELGD 239


>gi|255994330|ref|ZP_05427465.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC
           49989]
 gi|255993043|gb|EEU03132.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC
           49989]
          Length = 248

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRS-QTKQSDVQY 84
           +  H++ HVLR+  G  ILL +GK+ E+   I  + G+ ++ K+   +RS + ++ ++  
Sbjct: 22  EDVHHIVHVLRLIAGSRILLSDGKN-EYEGVIEDIGGEVVKGKITDLNRSFRERKVELSL 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTISAAEQCD 139
           I    K  +++++++K+ E+G+  + P      I + T       DR+    +SA EQ  
Sbjct: 81  IQGIPKAKKIEFIVEKAAELGVMKVFPAFMDRSIVKPTNKDDEKHDRLLKKALSACEQSK 140

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-------HAIAHIPNVAI 192
              +  +      + ++ + D + +++  +   G  N+L+ +       +      ++A+
Sbjct: 141 RNRVMRVGKLREFKDIILDIDADIKLIAYENEEG--NTLKDVLSEYGNGNDACKAMSIAL 198

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +IGPEGG    E  ++ S     P+SLG  ILR++TA + A +++
Sbjct: 199 VIGPEGGITDSEL-SIASANGYKPVSLGGSILRTETAGLVAASMI 242


>gi|303246600|ref|ZP_07332878.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans
           JJ]
 gi|302491940|gb|EFL51818.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans
           JJ]
          Length = 241

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 19/223 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SD 81
           +G +  + A VLR K G+ I  F+G   E L +I+ V +    +VE ++RS  +    + 
Sbjct: 21  TGGEAAHCAKVLRKKAGEIIRAFDGLGREGLFRITAVSRD---RVELEARSLAEAPLPAT 77

Query: 82  VQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQC 138
             Y+ +   ++ R D+ ++K+VE+G   I       +Q        +  +   ++AA+QC
Sbjct: 78  RLYLAAGFSRSTRRDFFLEKAVELGAAGIFFWQAARSQGRMPEAPKESWQATLVAAAKQC 137

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-----ETCGSENSLEKLHAIAHIPNVAIL 193
               LP +    T+          C   F       E  G +  + +L  +        +
Sbjct: 138 GAANLPEL---DTVSGGAAGLVAACSHHFDRRYLLWEAPGLDRRI-RLDDVGAPGEALFV 193

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +GPEGG    E        +  PLSLG R+LR +TA +A +AL
Sbjct: 194 LGPEGGLTDAEAAIFQDAGY-APLSLGERVLRFETAGLAVLAL 235


>gi|225850017|ref|YP_002730251.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498
           methyltransferase) [Persephonella marina EX-H1]
 gi|225646741|gb|ACO04927.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498
           methyltransferase) [Persephonella marina EX-H1]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 21/226 (9%)

Query: 27  DQYHYL-------AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           D Y YL       A V R+K GD I + + K   +L+++  + K    K     + + ++
Sbjct: 12  DGYAYLTEDELKHAKVKRVKTGDRIEINDLKGNVYLTEVLEITKRY-IKCRIIEKIKVEE 70

Query: 80  SDVQ---YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY----TQNTHYNMDRVRTYTI 132
            D +   Y   P + +++D +I+   ++G+    PVI+      T++    + +     +
Sbjct: 71  EDFRITLYQCMPNQLSKIDDIIEGVSQLGVYRFVPVISERSAVKTKDVLKKIKKWEKKAL 130

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           ++ +QC  L    I  P  LE +    D   + VF ++    E    K      + NV++
Sbjct: 131 NSIKQCKRLYPVIIENPVKLEDI--KSDDEGKFVFYEK---EEKRTVKEFLDKKLKNVSV 185

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +IGPEGG+   E + L    F+ PL++G  ILR +TA +  +  ++
Sbjct: 186 VIGPEGGFTEGEIKILQDKGFI-PLTMGKNILRMETAVITGICQIR 230


>gi|185179060|ref|ZP_02964799.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|184209047|gb|EDU06090.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 32/222 (14%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY----- 84
           H++ +V+RM+  D I++ N           ++ + I  +  + +  +   +D +      
Sbjct: 22  HHIKNVMRMRLHDEIIVINETQA-------FIAEIINLEPLHATIIKPYFNDCELSTKID 74

Query: 85  IF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILT 142
           +F + IK N  ++++QK+ E+G+ +I   I + T N T    +R+ T    A EQ     
Sbjct: 75  LFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNNRISTIIKEACEQARRNY 134

Query: 143 LPFIYPPTTLEFLLK---NWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           L   Y   +   LLK   ++D       N + +F ++     ++ +K         +A++
Sbjct: 135 LVNYYEQFSFSELLKVLLSYDLILVAYENEKQIFLNDIFKENSTYQK---------IALV 185

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           IGPEGG+  EE   L  +  V  +SL   ILRS+TA++  +A
Sbjct: 186 IGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227


>gi|114567095|ref|YP_754249.1| hypothetical protein Swol_1575 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338030|gb|ABI68878.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 248

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQ 83
           +Q  ++  VLR+K GD + +F+G   E+  ++    + I  + E  ++  T +    ++ 
Sbjct: 21  EQTRHIEKVLRLKSGDIVKVFDGNGNEYQVRLQEKKQKI-LQAEILAQETTAEDLAINLT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH-YNMDRVRTYTISAAEQ 137
            +    ++ ++D++IQK+VE+G+ ++ P+     + R+ +      + R +     A +Q
Sbjct: 80  LVQGIARSEKMDFIIQKAVELGVRSLIPLQSEHSVARFDKEKEGKKIKRWQKIAQEACKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAH-IPNVAILIG 195
           C    +P + P      L+    D    + +  E      +L +          + ++IG
Sbjct: 140 CGRNHIPEVKPILDFPALMAQIGDKPALLCYEQEREAYFRTLLREQRENFCTQGLFLIIG 199

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+   E E      +     LGPR LR++TA++ A  ++
Sbjct: 200 PEGGFSPAEVEIARRQGWFIA-GLGPRTLRTETASLLACGII 240


>gi|116328412|ref|YP_798132.1| hypothetical protein LBL_1752 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331141|ref|YP_800859.1| hypothetical protein LBJ_1528 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121156|gb|ABJ79199.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124830|gb|ABJ76101.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++  +L  +    E  N+ + NG   EW+ ++   G S R  +  ++    K   +  I 
Sbjct: 22  EEVSHLKALRIFSEDKNLRILNGIGSEWIYEVK--GNS-RQGILKKTEVHVKPESISAIA 78

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           + I K NRL++++QK  E+G+     +    +    +N+ R +     A+ Q   + LP 
Sbjct: 79  TAIPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSKRIFLPE 138

Query: 146 IYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           ++ P +L EFL    + N  I   D    SE   E         N   ++GPEGG+  +E
Sbjct: 139 VFVPVSLNEFLNLQENLNLSIYQFDPKGKSEPKPE------FFQNSIWIVGPEGGFREKE 192

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              L     +  +  G  IL+ +TA + A +L +
Sbjct: 193 IRLLREKN-ILGVKAGNAILKIETAGIFAASLFR 225


>gi|49483825|ref|YP_041049.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425702|ref|ZP_05602126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428363|ref|ZP_05604761.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431000|ref|ZP_05607380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433688|ref|ZP_05610046.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436602|ref|ZP_05612646.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904159|ref|ZP_06312047.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905986|ref|ZP_06313841.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908896|ref|ZP_06316714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911215|ref|ZP_06319017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914384|ref|ZP_06322170.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919353|ref|ZP_06327088.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924678|ref|ZP_06332346.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958341|ref|ZP_06375792.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503458|ref|ZP_06667305.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510475|ref|ZP_06669181.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293531015|ref|ZP_06671697.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428155|ref|ZP_06820787.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|49241954|emb|CAG40649.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271396|gb|EEV03542.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275204|gb|EEV06691.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278430|gb|EEV09066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281781|gb|EEV11918.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283953|gb|EEV14076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313513|gb|EFB43908.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317163|gb|EFB47537.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus C427]
 gi|282321565|gb|EFB51890.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324910|gb|EFB55220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327160|gb|EFB57455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331278|gb|EFB60792.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595777|gb|EFC00741.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790490|gb|EFC29307.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920283|gb|EFD97349.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095124|gb|EFE25389.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466839|gb|EFF09359.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128513|gb|EFG58147.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|315195480|gb|EFU25867.1| hypothetical protein CGSSa00_07415 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 250

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG  SE + +L S    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGL-SENEISLFS-NTSTVVGLGPRILRAETAPLYALSAI 242


>gi|331002887|ref|ZP_08326400.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413180|gb|EGG92554.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 245

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW--LSKISYV-GKSIRFKVEYQSRSQTKQSDV 82
           G   +++ +VLRMK G+ +L+     GEW  L KI  +    +  KV      +    ++
Sbjct: 20  GSDVNHIVNVLRMKPGEELLI--SVKGEWDYLCKIEEIENDRVNLKVLESMEQRELPVNI 77

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    K+++L+ +IQK++E+G+  I PV T+        +     + R      SAA+
Sbjct: 78  TLLQGIPKSDKLEMIIQKAIELGVSEIIPVKTKRVVVKIEEKKQASKVARWNAIAESAAK 137

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +  P +++  L+   D   +++  +   G E + + L+ +    N+A+ IG
Sbjct: 138 QSKRSIIPKVSEPKSIDNALEIVKDFGVKLIPYENADGIEKTRKILNGMDKTKNIAVFIG 197

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           PEGG+  EE E ++   F   ++LG RILR++TA +A ++
Sbjct: 198 PEGGFEEEEVEKINKSGFEV-ITLGKRILRTETAGLALLS 236


>gi|159039365|ref|YP_001538618.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora arenicola
           CNS-205]
 gi|157918200|gb|ABV99627.1| protein of unknown function DUF558 [Salinispora arenicola CNS-205]
          Length = 244

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 29/236 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G + H+ A V R++ G+ +LL +G+ G   + ++ VGK +   V   SR  T     + +
Sbjct: 21  GAEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGKGV-LDVRITSRGYTDAPAHRLV 79

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRT-----YTI-SAAE 136
                 K  R +  +Q   E+G+  I P  T     T +  DR VR       T+  A +
Sbjct: 80  VVQGLAKGERGELAVQAMTEVGVDEIVP-WTAARSVTQWRGDRGVRAREKWVATVREATK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-----ENSLEKLHAIAHIPN-- 189
           Q     LP +             +   Q+        +     E + E+L   A +P+  
Sbjct: 139 QARRAWLPVVAGTPD--------EATSQVAGRIAGAAAAYVLHEQAEERL-VTAELPDGG 189

Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +++GPEGG    E  T        P+ LGP +LR+ TA VAA++++ A  G W
Sbjct: 190 EIVLVVGPEGGVAPAEL-TAFVAAGAQPVRLGPSVLRTSTAGVAALSVLAARLGRW 244


>gi|288800066|ref|ZP_06405525.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333314|gb|EFC71793.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 242

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 32/241 (13%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-S 73
           P  + T    S +  H  + VLR++ GD ++L +GK     ++I  + KS   + EYQ +
Sbjct: 10  PSALATNELPSEEAIHA-SKVLRLQSGDEMVLIDGKGSFHQAEIVNITKS---RCEYQIT 65

Query: 74  RSQ----TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
            SQ    T  +++    +P K  +R++++ +K  E+G   +  +  R+++      +R+ 
Sbjct: 66  HSQEFPKTWNNNIHLAIAPTKNIDRIEWLTEKITEIGFDELSFLNCRFSERRVVKNERLE 125

Query: 129 TYTISAAEQCDILTLP----------FI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
              +SAA+Q     +P          F+  P   L+F+   ++   +I    + C + N 
Sbjct: 126 RIIVSAAKQSRKSWMPQLNEMVSFKEFVSIPHKGLKFIAHCYNQFPKI----DLCSTLNK 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E         +V IL+GPEG +  +E E      F + +SLG   LR++TA + A+ + 
Sbjct: 182 EEIKE------DVLILVGPEGDFSVDEVEMALKNGFQS-ISLGENRLRTETAGLVAVTIA 234

Query: 238 Q 238
           Q
Sbjct: 235 Q 235


>gi|124007911|ref|ZP_01692612.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123986673|gb|EAY26463.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 238

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 7/237 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64
           L +LF   P     Q   S ++  +   VLRMK+ D + L +GK   +L+KI+  +  K 
Sbjct: 4   LSQLFYS-PQTTHQQAILSEEESRHCVKVLRMKKNDELHLTDGKGNLFLAKIAEPHHKKC 62

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
           +   V    ++      +    +P K  +R+++ ++KSVE G+  I  V    ++     
Sbjct: 63  VLDIVRTIEQTPAPLYHIHVAIAPTKNIDRIEWFVEKSVEFGIQQISFVQCNRSERKQVK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           + R++   +SA +Q     +P I    + +  + N   +     A    G    L+ + A
Sbjct: 123 LPRIQKIALSAMKQSLKFFMPQINEMVSFKSFMANLTPDETRYVAHLNEGERVFLKDV-A 181

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             H     ILIGPEG +  +E     +  F   +SLG   LR++TA +AA  L+  +
Sbjct: 182 QKH-QKYCILIGPEGDFTPDEVTLALNNEF-KAVSLGNSRLRTETAGIAACHLLNIV 236


>gi|51891646|ref|YP_074337.1| hypothetical protein STH508 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855335|dbj|BAD39493.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 243

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K  +++ ++Q   E+G+     V    +      +      +R +     AAEQ     +
Sbjct: 84  KGEKMELVLQHGTELGIAEFVAVAAARSVVRLDERKAAQRTERWQRIAREAAEQSRRGAV 143

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P + PP T  E + +  + +  +V  +   G E     L A     ++A+ IGPEGG  +
Sbjct: 144 PTVAPPHTWKEAVARIPEFDLALVAWE--GGGEPLRAALEARPEARDIAVFIGPEGGLTA 201

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EE E L       P++LGPRILR++TA +AA+A +    G+W
Sbjct: 202 EEVE-LARQAGAVPVTLGPRILRTETAPLAAVAAILYARGEW 242


>gi|313884114|ref|ZP_07817880.1| RNA methyltransferase, RsmE family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620561|gb|EFR31984.1| RNA methyltransferase, RsmE family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 263

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 19/231 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQS--- 80
            GD +H+L  V+R K G  I +       + + I  + K+  + +V+   +         
Sbjct: 20  EGDDFHHLVKVMRAKPGQVIQVVAANQVAYAASIQTIDKATCQLQVDQILQDNCLIELPL 79

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN-THYNMDRVRTYTISA 134
           DV       K ++LD++ QK  E GM  ++P+     + ++  N     ++R+      A
Sbjct: 80  DVTLACGISKNDKLDWIAQKGTEGGMACLQPLNLKRDVAKWQANKAAKRIERLEKIVKEA 139

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHI---- 187
           A+Q     +P +     L +F+ +  +   +++  +ET   G    L K  +   +    
Sbjct: 140 AQQSHRRQIPQVNDCLNLIDFIRQVPNQAIKLIAFEETAKVGHHQVLAKTLSQLDLNQEV 199

Query: 188 -PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            P + ++ G EGG    E E L +  F    SLGPRILR++TA + A+  +
Sbjct: 200 LPPLVMVFGSEGGLDIGEVEQLQAAGF-KACSLGPRILRAETAPIFALGAI 249


>gi|294782590|ref|ZP_06747916.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA]
 gi|294481231|gb|EFG29006.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA]
          Length = 235

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 8/217 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82
             +  +++ +V R ++GD +   +G + E+L +I  +  K I+ K+ E ++   +   ++
Sbjct: 18  DANDINHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLDIEL 76

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               S +K +++D  IQK  E+G+  I P+ + R         DR  T    A +QC  +
Sbjct: 77  DAGISILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQCQGV 136

Query: 142 TLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
               +     ++ L LK++D        +E    ++ L  L        +  +IG EGG+
Sbjct: 137 VPTVVDEIKKIDKLNLKDYDLVLVPYENEEEIFLKDILRNLKV--KPSKILYIIGAEGGF 194

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             EE + L S      +SLG RILR++TAA+    ++
Sbjct: 195 EKEEIDFLKS-QGAKIISLGKRILRAETAAIVTGGVI 230


>gi|297590879|ref|ZP_06949517.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297575765|gb|EFH94481.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437954|gb|ADQ77025.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 253

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 28  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 86

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 87  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 146

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 206

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245


>gi|94986461|ref|YP_594394.1| 16S ribosomal RNA methyltransferase RsmE [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730710|emb|CAJ54072.1| uncharacterized protein conserved in bacteria [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 260

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 11/217 (5%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           + H+L HVLR++ G  I + +G+  E L  +  V K  R  + Y +     +   + + +
Sbjct: 39  ESHHLLHVLRIQIGTEIHVLDGRGREGLFSVKEVIKD-RVSLSYINDWMHPEPTRKVVLA 97

Query: 88  P--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDILTL 143
               K  R  ++ +K+ E+   AI       +Q   +    +  +   I+ A+QC+    
Sbjct: 98  AGWTKAARRGWLFEKAAELEAWAIWFWKAERSQFPLSEAKKESWQGQIIAGAKQCNNPWF 157

Query: 144 PFIYP-PTTLEFLLKNWDH-NCQI--VFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
           P +   P  +E L+ N D   C    V  + TCG    L  L  +        ++GPEGG
Sbjct: 158 PSLQLFPNGIEELIYNVDTIGCDFRHVLVENTCGPAQPL-TLDMLKQTGLTICVLGPEGG 216

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +  +E   L    F++ L+LG R+LR +TAA+  + L
Sbjct: 217 FTHKEILKLKEASFLS-LTLGDRVLRWETAAILCLGL 252


>gi|304373087|ref|YP_003856296.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           hyorhinis HUB-1]
 gi|304309278|gb|ADM21758.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           hyorhinis HUB-1]
 gi|330723289|gb|AEC45659.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyorhinis
           MCLD]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQCDILTL 143
           +KT   ++++QK+VE+G+  I P  ++  +    N     + R +   + AA+Q     +
Sbjct: 76  LKTKAFEFILQKAVELGVAKIIPFYSKNVEQKLGNDIDKKVQRWQEMVLHAAQQSFRNII 135

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +  P     +L N + N + + A E    ENS      +    +   LIGPEGG+  +
Sbjct: 136 PKVEKPIKFHEVL-NIEKNFKFI-AHEKENEENS-----QLLFDSDSLFLIGPEGGFTED 188

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           E     +  F   +SLG RILRS+TAA+  +A
Sbjct: 189 EIAKAKAKNFKV-ISLGKRILRSETAAMFCLA 219


>gi|282883131|ref|ZP_06291730.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus
           lacrimalis 315-B]
 gi|281296943|gb|EFA89440.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus
           lacrimalis 315-B]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 34/221 (15%)

Query: 27  DQYHYLAHVLRMKEG--------DNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
           +  H+L +V+R+K          D I+LFN KD   + K                 S   
Sbjct: 19  ENLHHLKNVIRIKADEDFSVVFKDKIILFNLKDDMLIYKKEIFD------------SNEP 66

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMD----RVRTYTIS 133
              +   F  +K ++ + +I+   E+G+    P+I  R   N    +D    R +    S
Sbjct: 67  PIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCVSNISDKVDKKIQRWQKIAKS 126

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNVAI 192
           AA Q     +P ++ P  ++ + KN+  +  + + DE     ++  EKL       N+AI
Sbjct: 127 AAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDERNLFFKDIKEKLSK-----NLAI 181

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           ++GPEGG    E E L        +SLG RILR++T++V  
Sbjct: 182 IVGPEGGISKREIEVLKD---AHRISLGKRILRAETSSVVG 219


>gi|261880465|ref|ZP_06006892.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270332804|gb|EFA43590.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 107/216 (49%), Gaps = 5/216 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFKV-EYQSRSQTKQSDVQY 84
           D+  +   VLR++ GD+I L +G+   + ++++  VGK   + + E   +++T    +  
Sbjct: 21  DEAQHAIRVLRLQVGDDIYLMDGQGMFYHAEVTLSVGKHCSYIIKEELPQTKTWLGRIHL 80

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R+++M++K+ E+G+  +  ++ ++++      DR+    +SA +Q      
Sbjct: 81  AIAPTKMMDRMEWMLEKATEIGVDEVTMLLCQFSERKKIRTDRLDKIIVSAMKQSRKAWK 140

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P +   T   +F++++      I          +  E+L  +     + +L+GPEG +  
Sbjct: 141 PRLNDLTQFKDFIVQSRRGRKFIAHCYHDIEKVDLFEELQQVPQDEEITVLVGPEGDFSI 200

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +E        + + ++LG   LR++TA + A+ + Q
Sbjct: 201 DEVHFALEHGYES-IALGSSRLRTETAGLMAVTMGQ 235


>gi|57651970|ref|YP_186474.1| hypothetical protein SACOL1634 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161276|ref|YP_494232.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195386|ref|YP_500190.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221692|ref|YP_001332514.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|258450594|ref|ZP_05698656.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262049150|ref|ZP_06022027.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30]
 gi|262051237|ref|ZP_06023461.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3]
 gi|282920126|ref|ZP_06327851.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           A9765]
 gi|284024636|ref|ZP_06379034.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus 132]
 gi|57286156|gb|AAW38250.1| conserved hypothetical protein TIGR00046 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127250|gb|ABD21764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202944|gb|ABD30754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374492|dbj|BAF67752.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|257861752|gb|EEV84551.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259160874|gb|EEW45894.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3]
 gi|259162819|gb|EEW47384.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30]
 gi|282594474|gb|EFB99459.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           A9765]
 gi|315198727|gb|EFU29055.1| hypothetical protein CGSSa01_09404 [Staphylococcus aureus subsp.
           aureus CGS01]
          Length = 250

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S + +V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIEVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|317497460|ref|ZP_07955780.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895246|gb|EFV17408.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK GD + L NG D E+  S + +   +I  K+E     +T+      
Sbjct: 6   GSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELPVKIT 65

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
           ++  + K ++++ ++QK+VE+G+  I PV  +        +     + R  T  +SAA+Q
Sbjct: 66  LYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCIVKLDAKKAAKKVSRWNTIALSAAKQ 125

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
                +P +      + +L+   D    +V  +E  G + S E +       ++ I+IGP
Sbjct: 126 AKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIGIIIGP 185

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  EE E L +    T +SLG RILR++TA +  ++++
Sbjct: 186 EGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSIL 225


>gi|317057269|ref|YP_004105736.1| hypothetical protein Rumal_2627 [Ruminococcus albus 7]
 gi|315449538|gb|ADU23102.1| protein of unknown function DUF558 [Ruminococcus albus 7]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 31/235 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
           G    ++   LRM+ GD + +   GKD  +  ++  V  +     V   S    + +   
Sbjct: 20  GADAVHIGRSLRMRLGDELTVCCEGKD--YTCRLDSVSDEQCGLAVLSVSEGSGEPTVRV 77

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
            ++  + K+++L+ ++QK+VE+G   I PV+T         ++     +R+    + AA+
Sbjct: 78  TLYQAVPKSDKLELIVQKAVELGAAEIVPVLTSRCVSRPDEKSYRKKRERLNKIALEAAK 137

Query: 137 QCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFAD-------ETCGSENSLEKLHAIAHIP 188
           QC    +P +    + E   K   +H   ++  +       ET G E             
Sbjct: 138 QCGRSIVPTVGDIISAEECAKRLGEHELGLICYEKGGAPLSETVGRECR----------- 186

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           ++ I IG EGG+   E +   +      + +GPRI+R +TA +AA+A+V ++ G+
Sbjct: 187 DIGIFIGSEGGFDEAEVDKCRA-EGAKVIGMGPRIMRCETAPLAAIAVVMSLTGN 240


>gi|242279431|ref|YP_002991560.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio salexigens
           DSM 2638]
 gi|242122325|gb|ACS80021.1| protein of unknown function DUF558 [Desulfovibrio salexigens DSM
           2638]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +L  VLR + GD + LF+G   + L  ++ + KS   KV+ +   +   +D + +
Sbjct: 22  GGEAKHLGKVLRTRVGDTVRLFDGCGRDGLFTVTEITKS---KVQLELNEEHFIADPRNL 78

Query: 86  FSPI---KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYTISAAEQCDI 140
              I   K++R +++++KSVE+    +    + ++Q        +      ++AA+QC  
Sbjct: 79  TLAIGWNKSSRRNWILEKSVELQTHGLIFYQSEFSQGKVPAETKESWNEKLVAAAKQCGN 138

Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
             LP +   P ++E L++        +F  E   ++N     +++    +   +IGPEGG
Sbjct: 139 AWLPELQTVPGSIEKLIEFSASYDNKLFLYEK--ADNDTVPNNSVFAAESTLAVIGPEGG 196

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   E E L    F  P+SLG  ILR +TAA+  M 
Sbjct: 197 FSPREAELLIENGF-KPVSLGSSILRWETAALLCMG 231


>gi|196248968|ref|ZP_03147668.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16]
 gi|196211844|gb|EDY06603.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16]
          Length = 282

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           SGD  H++A V+RMK GD I          + +I  +          Q + + ++  V+ 
Sbjct: 19  SGDDAHHIARVMRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAE 136
           YI   + K  + + +IQK  E+G        A R V+    +     ++R +     AAE
Sbjct: 79  YIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET---CGSENSLEKLHAIAHIPNVAIL 193
           Q +   LP +  P +L+ L+   +     +FA E     G   SL  L A    P  ++L
Sbjct: 139 QAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQ-PGSSLL 197

Query: 194 --IGPEGGYHSEEKETLHSLPFVTPLS 218
              GPEGG+  EE E L    F    S
Sbjct: 198 AVFGPEGGFSREEAEQLKQSGFCRAAS 224


>gi|291559325|emb|CBL38125.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium
           SSC/2]
          Length = 245

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK GD + L NG D E+  S + +   +I  K+E     +T+      
Sbjct: 20  GSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELPVKIT 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
           ++  + K ++++ ++QK+VE+G+  I PV  +        +     + R  T  +SAA+Q
Sbjct: 80  LYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAKKAAKKVSRWNTIALSAAKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
                +P +      + +L+   D    +V  +E  G + S E +       ++ I+IGP
Sbjct: 140 AKRGIIPEVREMKNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIGIIIGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  EE E L +    T +SLG RILR++TA +  ++++
Sbjct: 200 EGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSIL 239


>gi|331701362|ref|YP_004398321.1| ribosomal RNA small subunit methyltransferase E [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128705|gb|AEB73258.1| Ribosomal RNA small subunit methyltransferase E [Lactobacillus
           buchneri NRRL B-30929]
          Length = 246

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQYIFS 87
           H+L  VLR + GD   L       + ++I  + G  +   + +    +     DV  +  
Sbjct: 24  HHLCRVLRAEVGDRFELVGDDHQVYEAEIGRLEGNQVAANIIKPLDHNVELPVDVTIVSG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAI--RPV---ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
             K N+ ++++QK+ E+G+  +   P+   I ++ Q     + R+    +SAAEQ     
Sbjct: 84  LSKGNKPEWIVQKATELGVAHVIFLPMDWSIVKWDQKATKKITRLNEVALSAAEQSHRNV 143

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILIGPEGG 199
           +P +   + L+ L +  D + Q+V  +E+   G E +L K +   A    +A + GPEGG
Sbjct: 144 VPTVAYLSGLDALFQ-LDFDTQLVAYEESAKQGEETNLVKAVRQTASGGTMAAVFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E   L    FV    LGPRILR++TA +  ++ V  + 
Sbjct: 203 VSPAEVTQLVDHDFVLA-GLGPRILRTETAPLYFLSAVSTLT 243


>gi|161509805|ref|YP_001575464.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848608|ref|ZP_06789354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A9754]
 gi|160368614|gb|ABX29585.1| hypothetical protein USA300HOU_1578 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|294824634|gb|EFG41057.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A9754]
 gi|320140538|gb|EFW32392.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144075|gb|EFW35844.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 253

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S + +V+ + +         DV    
Sbjct: 28  HHITNVMRYDVGSKIILTFNDQTVYLCEIADI-TSDKIEVDLKEKQNINTELPVDVTICS 86

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 87  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 146

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 206

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245


>gi|72161244|ref|YP_288901.1| hypothetical protein Tfu_0840 [Thermobifida fusca YX]
 gi|71914976|gb|AAZ54878.1| Conserved hypothetical protein 46 [Thermobifida fusca YX]
          Length = 248

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 14/230 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           G +  + A V R+  G+ + L +G        ++ VG+ +I   V+ +      +  +  
Sbjct: 22  GAEGRHAATVRRIAVGEPVDLVDGAGHRARCVVTAVGRDTITCAVQERVFEAEPRPRITV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAAEQC 138
           + +  K +R +  ++   E G+ A+ P      ITR+  +    ++ + R+   +AA+Q 
Sbjct: 82  VQALPKGDRGELAVEVMTEAGVDAVVPWQAERCITRWRGDRVARSLTKWRSAARAAAKQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSL---EKLHAIAHIPNVAILI 194
               +P +  P     ++   +     IV  +E     + L   E+L   A   +  +++
Sbjct: 142 RRSRIPEVAEPVGKAGVVALLESATLGIVLHEEGAVRLSQLPLPEELFGPAG--HAVLVV 199

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG+   E         +  L LGP +LR+ TA VAA+A++QA CG W
Sbjct: 200 GPEGGFSDAELAAFEDAGALRAL-LGPTVLRTSTAGVAALAVLQARCGRW 248


>gi|224060885|ref|XP_002300283.1| predicted protein [Populus trichocarpa]
 gi|222847541|gb|EEE85088.1| predicted protein [Populus trichocarpa]
          Length = 212

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 11/209 (5%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY----IFS 87
           +  VLR+   D + LFNGK G     I  + ++    V  +          ++     F 
Sbjct: 1   MTKVLRLGTNDRVELFNGKGGLIEGCIERIDRTGLDFVALEDPKLVPPLSTKWHVYAAFG 60

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDILTLPFI 146
            +K +R D++++K  E+G  ++ P++T  + +   N +DR R   ++A +Q   L    +
Sbjct: 61  TLKGDRADWLLEKCTELGAHSVTPLLTERSPSISENRVDRFRRVILAATKQSQRLHEMIL 120

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            PPT +  LL       ++ F   T G+   +  L +     +  +++GPEG + +E++ 
Sbjct: 121 NPPTKIVGLLP----LSKLSFL-ATAGATPVVSVLTSSRKESSGLMIVGPEGDF-TEKEV 174

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +      + + LGP  LR +TA +A +A
Sbjct: 175 NMMMKAGASAVGLGPHRLRVETATMALLA 203


>gi|226360380|ref|YP_002778158.1| 16S ribosomal RNA methyltransferase RsmE [Rhodococcus opacus B4]
 gi|226238865|dbj|BAH49213.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 253

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 33/239 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQ 83
           G +  + A V R+  G+ I+L +G+ G   ++++  GK  R ++    R Q       V 
Sbjct: 22  GPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAGKD-RLELTVHDRRQVSAPSPSVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQ-NTHYNMDRVRTYTISAAEQ 137
            + +  K  R +  ++ + E G+ AI P      + R+        + R R+  ++AA+Q
Sbjct: 81  VVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVAKGVARWRSAALAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLH-----AIAHIP-- 188
                +P +      E       H    + A   E  G    +  LH      +A +P  
Sbjct: 141 SRRAIVPAVS-----EL------HRTAGMLAVVREVIGRGGVVAVLHEAATQGLAELPLR 189

Query: 189 ---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               + +++GPEGG   +E   L     V P+ LGP +LR+ TAA  A+  +  +   W
Sbjct: 190 SAAEIVLVVGPEGGISEDEITALTEAGAV-PVLLGPHVLRTSTAAAVALGAIGVLTDRW 247


>gi|221140003|ref|ZP_03564496.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|269941067|emb|CBI49451.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302751407|gb|ADL65584.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329314253|gb|AEB88666.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 250

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S + +V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIEVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKAAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|167767378|ref|ZP_02439431.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1]
 gi|167711353|gb|EDS21932.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1]
          Length = 245

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           G   +++ +VLRMK GD + L NG D E+  S + +   +I  K+E     +T+      
Sbjct: 20  GSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELPVKIT 79

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
           ++  + K ++++ ++QK+VE+G+  I PV  +        +     + R  T  +SAA+Q
Sbjct: 80  LYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAKKAAKKVSRWNTIALSAAKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
                +P +      + +L+   D    +V  +E  G + S E +       ++ I+IGP
Sbjct: 140 AKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIGIIIGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG+  EE E L +    T +SLG RILR++TA +  ++++
Sbjct: 200 EGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSIL 239


>gi|257455067|ref|ZP_05620310.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus
           SK60]
 gi|257447539|gb|EEV22539.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus
           SK60]
          Length = 294

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 116/281 (41%), Gaps = 53/281 (18%)

Query: 7   LKRLFVDFP--LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F + P  L + +    + D +H+   VLR   G+  L F+G+ GE+   +  V K 
Sbjct: 1   MRRFFYNQPNLLQVGSTVPLTEDIFHHWCKVLRASMGEQALFFDGQGGEYTVTLKDVTKK 60

Query: 65  IRFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
                  ++   ++     V       +  R+DY IQK+ E+G+ +I+ + +++ +    
Sbjct: 61  QALVTINDFNPINRALPFTVNIALVMSRGERMDYAIQKATELGVSSIQLLTSQHGEVRLK 120

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE------------------FLLKN 158
                  +   +   +SA EQC +  +P +  P  +                    L   
Sbjct: 121 ADQADKKLAHWQQIAVSACEQCGLNIVPNLLAPKAVSDWIDEPAGVPTSTNVTKLILAVP 180

Query: 159 WDHNCQIVFADETCGSE--------NSLEKL-------HAIAHIPN---------VAILI 194
            D +  +   ++  GS+        N +E +       + + HI N           +LI
Sbjct: 181 PDDSGVVTSCNQIEGSDIEHSDIEHNDIEPIAPYTPYPNPLPHITNQFRQCSLAQFWLLI 240

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           G EGG+ ++E        F+ P  +G R+LR++TA V A++
Sbjct: 241 GAEGGFSAQEITQAIERGFI-PWQIGERVLRTETAPVVALS 280


>gi|304380834|ref|ZP_07363494.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|304340561|gb|EFM06495.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
          Length = 253

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S + +V+ + +         DV    
Sbjct: 28  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIEVDLKEKQNINTELPVDVTICS 86

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 87  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKAAKKIERWQKIIKEAAEQSYR 146

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGP 206

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245


>gi|304439565|ref|ZP_07399470.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371944|gb|EFM25545.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 227

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 14/152 (9%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMDR--VRTYTI--SAAEQCDILTL 143
           IK ++ +  ++K+ E+G+ +I P+I  R   N     D+  +R   I  SAA+Q     +
Sbjct: 72  IKQDKFELALEKTTEVGVSSITPIIFKRTVVNIKGKEDKKLLRWQKILESAAKQSKRDII 131

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--EKLHAIAHIPNVAILIGPEGGYH 201
           P I  P  LE    N +    ++   E  G+EN    + L     I  ++ILIGPEGG+ 
Sbjct: 132 PSINNPEKLE----NINFKGTLIVPYE--GAENLYIDDVLKNTKGIEEISILIGPEGGFD 185

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             E E L ++     ++LG RILR++TAA+ A
Sbjct: 186 ESEIEYLKTMG-CKIVTLGTRILRAETAAIVA 216


>gi|253733172|ref|ZP_04867337.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207704|ref|ZP_06924139.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911785|ref|ZP_07129228.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|253728712|gb|EES97441.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887721|gb|EFH26619.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886031|gb|EFK81233.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 253

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 28  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 86

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 87  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 146

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 206

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245


>gi|325270090|ref|ZP_08136697.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324987391|gb|EGC19367.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 259

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 24/228 (10%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIK- 90
            VLR+KEGD + L +G+   + ++++            Q+  QT+  +  +    +P K 
Sbjct: 28  RVLRLKEGDELFLMDGEGCFYRAEVALATTKKCIYAIRQTLRQTRAWRGRIHLAIAPTKD 87

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             R+++M +K+ E+G   +  +  ++++      DR+    ISA +Q      P + P  
Sbjct: 88  MGRMEWMAEKATEVGFDVLSFLDCKFSERKTLRTDRIEKIVISAVKQSRKGWKPAVNPMM 147

Query: 151 TLEFLLKNWDHN-----CQI--------VFADETCGS---ENSLEKLHAIAHIPNVA--- 191
           +    +++   N     C           F+  +C S    +S ++    A  P+ A   
Sbjct: 148 SFRSFIEHCPDNGRKYICHCYPEISRADFFSAVSCVSPAVRSSQDRRQTDADTPSSAEDL 207

Query: 192 -ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +LIGPEG +  +E     +  F + ++LG   LR++TA ++A+ + Q
Sbjct: 208 TVLIGPEGDFSIDEVRLAMAHGFES-VTLGNSRLRTETAGLSAVMMSQ 254


>gi|282916847|ref|ZP_06324605.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus D139]
 gi|283770653|ref|ZP_06343545.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319334|gb|EFB49686.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460800|gb|EFC07890.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus H19]
          Length = 250

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNNQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|317128303|ref|YP_004094585.1| hypothetical protein Bcell_1591 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473251|gb|ADU29854.1| protein of unknown function DUF558 [Bacillus cellulosilyticus DSM
           2522]
          Length = 250

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++R F++  +  +     SGD   +++ V+RM++GDNI+        +   IS +  S I
Sbjct: 1   MQRYFINPQMFHEDHVVISGDDAKHISRVMRMEQGDNIICCTTSGVCYECVISEMKDSYI 60

Query: 66  RFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQ 118
              +E Q S+S     +V       K ++ +++IQK  E+G        A R ++    +
Sbjct: 61  YATIEKQESKSVELPVNVTIGHGLPKGDKFEWVIQKGTELGAKNFLPFEAERSIVKLDKK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +DR       AAEQ     LP +        LL + D    ++ A E     +  
Sbjct: 121 KADKKIDRWNKIAKEAAEQSHRQQLPKVMEVQRFSQLLDHVDGYSYVLVAYEEAAKNDEK 180

Query: 179 EKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L ++        ++  L GPEGG+   E   L     +    LGPRILRS+TA +  +
Sbjct: 181 SQLFSVLQEVKKGESILFLFGPEGGFSDREINELTKKGALI-CGLGPRILRSETAPLYGL 239

Query: 235 ALV 237
             +
Sbjct: 240 TAI 242


>gi|317125267|ref|YP_004099379.1| hypothetical protein Intca_2142 [Intrasporangium calvum DSM 43043]
 gi|315589355|gb|ADU48652.1| protein of unknown function DUF558 [Intrasporangium calvum DSM
           43043]
          Length = 247

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 21/226 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR---FKVEYQSRSQTKQSD 81
           GD+  + A V+R++ G+   + +G     L++   V + S+R    +V  ++   T+   
Sbjct: 26  GDEGRHAATVVRLRPGERYYVADGVGRRALAEAETVDRTSVRGRVLEVVDEAEPATRFVL 85

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAA 135
           VQ +    K +R +  I+ + E+G+       A R ++    +    ++ +  T    AA
Sbjct: 86  VQALA---KGDRDEQAIEAATELGVDEVVPWAAERSIVVWRGERAAKSLAKWMTVVTRAA 142

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA--HIPNVAIL 193
           +Q     +P    P  L  L+         +   E      + E L A+A     +V ++
Sbjct: 143 KQSRRARIPLTSSPVDLAALIDRVRGAALTLVLHE-----EATEPLAAVAVAESGDVLVV 197

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +GPEGG    E E L +     P+ LGP  LRS TA  AA+A++ A
Sbjct: 198 VGPEGGISGRELEALVA-AGARPVRLGPTTLRSSTAGPAALAVLNA 242


>gi|319943087|ref|ZP_08017370.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599]
 gi|319743629|gb|EFV96033.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599]
          Length = 275

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 37/247 (14%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDVQYIF 86
           H+L  VLR   GD I +F+G+   W ++++    +   ++  +  +   + +    Q + 
Sbjct: 31  HHLLRVLRRGIGDEIEVFDGQGRCWHAQVASTKPATVTLQAALPAEPPPRLRLGLAQCLS 90

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
           +     ++D+ I+K+VE+G+  I P+++  +            +   +   ++AA QC  
Sbjct: 91  T---AEKMDWTIEKAVELGVSHIVPLLSARSVVKLDGARAEKRVQHWQRLVVAAAMQCGR 147

Query: 141 LTLPFIYP----PTTLEFLLKNWDHNCQIVFADETCGS--------------------EN 176
             LP I P     T L  L     H  + V +     S                    + 
Sbjct: 148 SRLPEIAPIQPVGTWLASLPAPQAHERRWVLSPLAESSLMAQASALAAQTGTPLAWDQDQ 207

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++   + A  P   +L GPE G    E E   +  +  P  LGPR+LR++TA +  + +
Sbjct: 208 PIDAAASEAATPTAWLLCGPESGLAETEVEQALAQGW-QPALLGPRVLRTETAGLVGLTV 266

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 267 LQAALGD 273


>gi|21283258|ref|NP_646346.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486412|ref|YP_043633.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|21204698|dbj|BAB95394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244855|emb|CAG43316.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|329733247|gb|EGG69584.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 250

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|148380908|ref|YP_001255449.1| hypothetical protein CBO2956 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934252|ref|YP_001385216.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934969|ref|YP_001388685.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A
           str. Hall]
 gi|148290392|emb|CAL84519.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152930296|gb|ABS35796.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930883|gb|ABS36382.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str.
           Hall]
          Length = 252

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 38/259 (14%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K S+  
Sbjct: 3   KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q     +     Y++  + K+ ++D ++QKS E+G+  I PVIT   +        
Sbjct: 63  KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLKEF 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +DR     + A +QC    +P +  P     LL+       IV   E      S E  
Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYE------SKENY 176

Query: 182 HAIAHIPNVAILIGPEGGYHSE---------------EKETLHSLPFVTP--LSLGPRIL 224
              + I N+         Y  E               E+  + +L  +    ++LGPRI 
Sbjct: 177 GIKSLIKNIE--------YEKENIKNIGIIIGPEGGFEESEIRALEEIKAQIVTLGPRIF 228

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA +   +++    GD
Sbjct: 229 RTETAGIVCASIISYELGD 247


>gi|262068260|ref|ZP_06027872.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291377998|gb|EFE85516.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 235

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 24/220 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY--IF 86
           +++ +V R ++GD +   +G + E+L +I  +  K I+ K+  + ++     DV+     
Sbjct: 23  NHIKNVFRKEKGDILRAVDGFN-EYLCEIEEISDKEIKLKI-IEKKADKFSLDVKLDAAI 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           S +K +++D  IQK  E+G+  I P+ + R         DR  T    A +QC  +    
Sbjct: 81  SILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTIAKEALKQCQGVVPTV 140

Query: 146 IYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPE 197
           +     ++ L  K++D       N + VF  +          L  +   P+ +  LIG E
Sbjct: 141 VDEIKKIDKLDFKDYDLILVPYENEKEVFLKDI---------LRNLKVKPSKILYLIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GG+  EE E L S      +SLG RILR++TAA+    ++
Sbjct: 192 GGFEKEEIEFLESRG-AKIISLGKRILRAETAAIVTGGVI 230


>gi|328554279|gb|AEB24771.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
           amyloliquefaciens TA208]
 gi|328912676|gb|AEB64272.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens LL3]
          Length = 256

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS-IRFKV-EYQSRSQTKQSD 81
           +G+  H++A+V+RM  G  I+  + KDG E L  +  V K  I   V E+   ++     
Sbjct: 22  TGEDVHHIANVMRMSAGGRIICCS-KDGHEALCLLKEVSKDHISCSVAEWTGENRELPLK 80

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135
           ++      K ++L+++IQK  E+G          R V+    +      +R       AA
Sbjct: 81  IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAA 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVA 191
           EQ     +P +    T   LL+  ++   C + + + +   E      +L ++    ++ 
Sbjct: 141 EQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL 200

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E + L     V    LGPRILR++TA + A++ V
Sbjct: 201 IVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPLYALSAV 245


>gi|313678552|ref|YP_004056292.1| hypothetical protein MBOVPG45_0458 [Mycoplasma bovis PG45]
 gi|312950389|gb|ADR24984.1| conserved hypothetical protein TIGR00046 [Mycoplasma bovis PG45]
          Length = 227

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 17/158 (10%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILT 142
           IK  R +++IQK+ E+G+  I P+ ++Y   T         +DR      +AAEQ    T
Sbjct: 75  IKIKRFEWLIQKATELGVSRIIPMNSKYVDQTIVKHEFSKKIDRFNEIIKNAAEQSFRNT 134

Query: 143 LPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           +P +    T  E +L N D    + + ++   S+  ++K+       N  +++GPEGG  
Sbjct: 135 VPELESIKTFEEIILNNQDKKIYVAYENKELDSQ--IDKIDT-----NSILIVGPEGGLS 187

Query: 202 SEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             E +  L +  F+  +SLG  ILR++TA +  ++ V+
Sbjct: 188 DSEVDFALKNNCFI--VSLGKTILRAETACIYMLSNVR 223


>gi|254432379|ref|ZP_05046082.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
 gi|197626832|gb|EDY39391.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
          Length = 271

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 27/258 (10%)

Query: 3   IHSHLKRLFVDFPLCIKTQG---KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI- 58
           +   L+RL VD PL +   G        + HYL  VLR+++GD   + +G    W + + 
Sbjct: 1   MGRELRRLLVD-PLRLTEAGGLLPLERGELHYLRRVLRLRQGDRFAVVDGLGRLWSANLQ 59

Query: 59  ---------SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
                    + + +     +E   R       ++   +P + +  + +++ + E+G+  I
Sbjct: 60  TDPARQEGAALLEQPFERPLEQGPRPAPP---LRLAIAPPRRDG-EVLLRMACELGIDQI 115

Query: 110 RPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168
           + +   R   +     +R R+    A EQC+ L LP    P            +  ++ A
Sbjct: 116 QWLSAERSVVDAPPREERQRSVLREALEQCERLWLPRSSGPEPAAAWFARQPEDQLLLLA 175

Query: 169 DETCGSENSL----EKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
              C     L    E+  +    P+   V + +GPEGG+   E+E      ++  +SLG 
Sbjct: 176 TTRCSDAAPLLEVLEREGSKVASPDSSTVTLAVGPEGGWSPLEQEQALERGWLA-VSLGD 234

Query: 222 RILRSDTAAVAAMALVQA 239
            ILR+ TAAVA + L+ A
Sbjct: 235 GILRTSTAAVAGVTLLSA 252


>gi|282881481|ref|ZP_06290152.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS
           5C-B1]
 gi|281304645|gb|EFA96734.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS
           5C-B1]
          Length = 242

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQYIFSPIKT 91
           VLR+  GD + L +G  G +   I  +  +     E Q    + ++ +  +    +P KT
Sbjct: 29  VLRLSSGDEMFLMDGV-GNFYRAIVTIASTKHCFYEIQETLPQQKSWRGHIHLAIAPTKT 87

Query: 92  -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             R+++M++K  E+G   I  +  ++++       R+    I+A +Q      P + P  
Sbjct: 88  MERIEWMVEKMTEIGFDEITFLNCQFSERKQIRPIRLEKIVIAAMKQSRKPWKPVVNPMV 147

Query: 151 TLEFLLKNWDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           +     KN+ H+       I         ++ L  LH I    ++ IL+GPEG +  +E 
Sbjct: 148 SY----KNFIHHQTTGHRYIAHCYPEIERKDLLTTLHQITDDDDITILVGPEGDFSVDEV 203

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +      F + +SLG   LR++TA + A+A+ Q
Sbjct: 204 KFAEQAGFES-ISLGKNRLRTETAGLMAVAMTQ 235


>gi|168181642|ref|ZP_02616306.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf]
 gi|237796409|ref|YP_002863961.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum Ba4
           str. 657]
 gi|182675193|gb|EDT87154.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf]
 gi|229262623|gb|ACQ53656.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Ba4
           str. 657]
          Length = 252

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 38/259 (14%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K S+  
Sbjct: 3   KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q     +     Y++  + K+ ++D ++QKS E+G+  I PVIT   +        
Sbjct: 63  KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLKEF 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +DR     + A +QC    +P +  P     LL+       IV   E      S E  
Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEETKGMDLIVVPYE------SKENY 176

Query: 182 HAIAHIPNVAILIGPEGGYHSE---------------EKETLHSLPFVTP--LSLGPRIL 224
              + I N+         Y  E               E+  + +L  +    ++LGPRI 
Sbjct: 177 GIKSLIKNIE--------YEKENIKNIGIIIGPEGGFEESEIRALEEIKAQIVTLGPRIF 228

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA +   +++    GD
Sbjct: 229 RTETAGIVCASIISYELGD 247


>gi|303237747|ref|ZP_07324307.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN]
 gi|302482199|gb|EFL45234.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN]
          Length = 239

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 18/222 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ-SRSQTKQSDVQY 84
           ++  +   VLR+K GD I L +G+   + ++++    K   + ++    + +T  S +  
Sbjct: 21  EEATHAVRVLRLKSGDEIYLMDGEGTFFQAEVTLASQKHCLYNIKKAIPQEKTWNSKIHL 80

Query: 85  IFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K   R++++++K  E+G   I  +  ++++      DR+    +SA +Q      
Sbjct: 81  AIAPTKDIGRIEWLVEKVTEVGFDEISFLNCKFSERKSLRSDRIERIVVSAMKQSRKPWK 140

Query: 144 PFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSLEKLHAIAHI-----PNVAILIGP 196
           P +         L N+D   N     A   C   N +EK+     I      N+ +LIGP
Sbjct: 141 PIVNE-------LINFDDFINKDFKGAKYICHCYNEIEKIDFFNSINLQTTENITVLIGP 193

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           EG +  EE     +  + + ++LG   LR++TA +AA+ +  
Sbjct: 194 EGDFSIEEVRKALANGYQS-VTLGNSRLRTETAGLAAVMMAN 234


>gi|170289238|ref|YP_001739476.1| hypothetical protein TRQ2_1449 [Thermotoga sp. RQ2]
 gi|170176741|gb|ACB09793.1| protein of unknown function DUF558 [Thermotoga sp. RQ2]
          Length = 222

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 111/214 (51%), Gaps = 22/214 (10%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           + H++  V+R+KEGD I   +GK   +   + S   K+   ++      + + ++   + 
Sbjct: 20  EAHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKTAAARIVKAEEKEKEPTEKLSVV 78

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLP 144
            PI +  R  ++I+K VE+G+  I     ++ ++ H  ++D+ +     AA+QC      
Sbjct: 79  VPIGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKAKIVVREAAKQCK----R 132

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203
           +++P  +    L+  + +  ++  D    S+N L+     A++  ++ +++GPEGG+  +
Sbjct: 133 YLFPKVSF---LEKLEFSGNVITLD-LDASQNLLD-----ANLEGSITVVVGPEGGFSEK 183

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E+E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 184 ERELLRSST--TIVSLGKKILRFETAAILTVGYI 215


>gi|317490537|ref|ZP_07949014.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316910352|gb|EFV31984.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 291

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 15/220 (6%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           A VLR+  G++I + +     +  +I+    ++      Q     ++  V  +    K +
Sbjct: 33  ARVLRLAPGEHIAVVDAAQDYFECEIAAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGD 92

Query: 93  RLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +++ +I+ + E+G+ A  P+     I R   +       R R    SAA Q      P +
Sbjct: 93  KMETVIRHATELGVSAFVPMACERSIVRLDARKAAARTQRWRAIAKSAAMQSGQRVCPEV 152

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIPNVAILIGPEG 198
             P  L  +  +  H   ++   E    +  +EK          A+     +A+++GPEG
Sbjct: 153 GEPMALADVCASLAHATAVLVCWEEAPLDARIEKALERGLRLDRALPENARIAVVVGPEG 212

Query: 199 GYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E + L +  P  + +SLG  ILR++TA + A ALV
Sbjct: 213 GLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALV 252


>gi|299822883|ref|ZP_07054769.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816412|gb|EFI83650.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 252

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 13/219 (5%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYIF 86
           +H+LA V+RM  GD + +    +    ++I  V   K++   VE+Q+ +      +    
Sbjct: 24  HHHLARVMRMTTGDQVYIVFADNQFCTAEIVSVSEDKTLLKLVEWQTNNPELPIAITIAS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
              K ++L++++QK  E+G  +       R ++    + T    +R++     AAEQ   
Sbjct: 84  GLPKGDKLEWIVQKGTELGADSFIAFPSDRSIVKWDAKKTEKKRERLQKIAKEAAEQSHR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAILI--GP 196
           + +P I    + + L +       +V A E     N    L ++  A  P + +L+  GP
Sbjct: 144 VHVPTITTLASGKQLAERCGEYDAVVVAYEESAKANEKAVLASVFAALRPGMRLLVIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG  SE++  L          LGPRILR++TA +  +A
Sbjct: 204 EGGI-SEQEIQLFKAQKAHFAGLGPRILRTETAPLYLLA 241


>gi|15924567|ref|NP_372101.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927157|ref|NP_374690.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus N315]
 gi|148268061|ref|YP_001247004.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394129|ref|YP_001316804.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156979895|ref|YP_001442154.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253316052|ref|ZP_04839265.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006363|ref|ZP_05144964.2| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793653|ref|ZP_05642632.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258411047|ref|ZP_05681327.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258420149|ref|ZP_05683104.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258437409|ref|ZP_05689393.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258443615|ref|ZP_05691954.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446822|ref|ZP_05694976.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448736|ref|ZP_05696848.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258453553|ref|ZP_05701531.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269203205|ref|YP_003282474.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893078|ref|ZP_06301312.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8117]
 gi|282928210|ref|ZP_06335815.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A10102]
 gi|296275801|ref|ZP_06858308.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MR1]
 gi|13701375|dbj|BAB42669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247348|dbj|BAB57739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741130|gb|ABQ49428.1| protein of unknown function DUF558 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946581|gb|ABR52517.1| protein of unknown function DUF558 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722030|dbj|BAF78447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787625|gb|EEV25965.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257840197|gb|EEV64661.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257843860|gb|EEV68254.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257848614|gb|EEV72602.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851021|gb|EEV74964.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854397|gb|EEV77346.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858014|gb|EEV80903.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257864284|gb|EEV87034.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262075495|gb|ACY11468.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590017|gb|EFB95099.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A10102]
 gi|282764396|gb|EFC04522.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8117]
 gi|285817259|gb|ADC37746.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus 04-02981]
 gi|312829965|emb|CBX34807.1| RNA methyltransferase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129856|gb|EFT85846.1| hypothetical protein CGSSa03_02183 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727099|gb|EGG63555.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 250

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|225175075|ref|ZP_03729071.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT
           1]
 gi|225169251|gb|EEG78049.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT
           1]
          Length = 246

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 7/205 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           D  H+L  VLR   G  + L + K     + I+ V    +R ++ ++             
Sbjct: 21  DDAHHLLRVLRASVGQEVELCDDKGSCRRAVIAGVDHGEVRCRLGHELPDSEAVIRFYLA 80

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           F  +K  + ++++QK+ E+G     P      + R  +       R +     AA Q   
Sbjct: 81  FGVLKGEKTEFILQKATELGAAGFFPFTSERSVVRPDKKAEKIQKRWQKIIHGAAAQSRR 140

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P + PP     +L       ++VF  E+       + L   +    V ++ GPEGG+
Sbjct: 141 AIIPQLNPPCKWPDVLDLSKTFDKVVFFWESEEDRPLAKSLEGCSRGDRVLLITGPEGGF 200

Query: 201 HSEEKETLHSLPFVTPLSLGPRILR 225
            ++E   L  L  + P++LGPRILR
Sbjct: 201 SAKEAAALGKLG-IEPVTLGPRILR 224


>gi|170756725|ref|YP_001782589.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B1
           str. Okra]
 gi|226950382|ref|YP_002805473.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A2
           str. Kyoto]
 gi|169121937|gb|ACA45773.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum B1
           str. Okra]
 gi|226842685|gb|ACO85351.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A2
           str. Kyoto]
          Length = 252

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K S+  
Sbjct: 3   KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q     +     Y++  + K+ ++D ++QKS E+G+  I P+IT   +        
Sbjct: 63  KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF---ADETCGSENSL 178
             +DR     + A +QC    +P +  P     LL+       IV    + E  G ++ +
Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKSLI 182

Query: 179 EKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + + +   +I N+ I+IGPEGG+   E   L  +     ++LGPRI R++TA +   +++
Sbjct: 183 KNIEYKKENIKNIGIIIGPEGGFEESEIRALEEIK-AQIVTLGPRIFRTETAGIVCASII 241

Query: 238 QAICGD 243
               GD
Sbjct: 242 SYELGD 247


>gi|294670651|ref|ZP_06735527.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307621|gb|EFE48864.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 143

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 102 VEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155
           +E+G+  I      R V+    +     + R +   ISA EQ    T+P + P       
Sbjct: 1   MELGVNEIIPVESARSVVKLSGERAEKRVSRWQEIVISACEQSGRNTVPAVRPLLPFRRA 60

Query: 156 LKNW-DHNCQIVFA-DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
           L+N  D   +++ + + +C       +L+++    +V  ++GPEGG+  EE+       F
Sbjct: 61  LQNLPDAEAKLLMSLNRSC-------RLNSLPPPRSVVFMVGPEGGWTEEEERFAQEAGF 113

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              +SLG R+LR++T A+AA+A +Q + GD
Sbjct: 114 QA-VSLGRRVLRTETTALAAIAAMQTLWGD 142


>gi|253732230|ref|ZP_04866395.1| protein of hypothetical function DUF558 [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724019|gb|EES92748.1| protein of hypothetical function DUF558 [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 253

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 14/220 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQS-DVQYIFS 87
           H++ +V+R   G  I+L       +L +I+ +    I   ++ +    T+ S DV     
Sbjct: 28  HHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELSVDVTICSG 87

Query: 88  PIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
            IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   L
Sbjct: 88  LIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRL 147

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPE 197
            +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GPE
Sbjct: 148 VIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPE 207

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 208 GGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245


>gi|302333253|gb|ADL23446.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 250

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDQIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|168179387|ref|ZP_02614051.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
           NCTC 2916]
 gi|182669772|gb|EDT81748.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
           NCTC 2916]
 gi|322807273|emb|CBZ04847.1| ribosomal RNA small subunit methyltransferase E [Clostridium
           botulinum H04402 065]
          Length = 252

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 38/259 (14%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K S+  
Sbjct: 3   KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q     +     Y++  + K+ ++D ++QKS E+G+  I P+IT   +        
Sbjct: 63  KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +DR     + A +QC    +P +  P     LL+       IV   E      S E  
Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYE------SKENY 176

Query: 182 HAIAHIPNVAILIGPEGGYHSE---------------EKETLHSLPFVTP--LSLGPRIL 224
              + I N+         Y  E               E+  + +L  +    ++LGPRI 
Sbjct: 177 GIKSLIKNIE--------YEKENIKNIGIIIGPEGGFEESEIRALEEIKAQIVTLGPRIF 228

Query: 225 RSDTAAVAAMALVQAICGD 243
           R++TA +   +++    GD
Sbjct: 229 RTETAGIVCASIISYELGD 247


>gi|283470856|emb|CAQ50067.1| protein YqeU [Staphylococcus aureus subsp. aureus ST398]
          Length = 250

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +++ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEVADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|300173195|ref|YP_003772361.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887574|emb|CBL91542.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 247

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAA 135
           +V  I SP+K +R D+++QK+ E+G+  I        +  + +       R++    +AA
Sbjct: 78  NVTIIVSPLKNDRSDWLVQKATELGVNRIVFAEMTRTVADWKKQEAKKAVRLQKIAQAAA 137

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAI 192
           EQ   L +P I   T    L  +      +V  +E+  +      + +I  +P   +V +
Sbjct: 138 EQSHRLLVPQIQFLTWQNVL--DLPKQMGLVAWEESARTGEVATLVKSINEVPIDTDVNL 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + GPEGG    E E L    +  P  LGPRILR++TA + A++ +  +
Sbjct: 196 VFGPEGGLTILEIEALARHEYY-PAGLGPRILRAETAPLYALSAISVL 242


>gi|323443249|gb|EGB00867.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           O46]
          Length = 250

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADI-TSDKITVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|323490055|ref|ZP_08095276.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis
           MPA1U2]
 gi|323396351|gb|EGA89176.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis
           MPA1U2]
          Length = 245

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 17/226 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLF---NGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           +GD   ++A V+R   GDN++        D E LS    V   I  K+E       K   
Sbjct: 19  TGDDAKHIAKVMRQTVGDNLIAVIEEQAYDAEILSTDFDVEIKIGNKIETLVELPKK--- 75

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAA 135
           V       K ++LD + QK+ E+GM A+ P      ++      +   + R++     AA
Sbjct: 76  VTIACGLPKGDKLDLITQKATELGMYALLPFSAERSIVKWDNAKSDKKIGRLQKIAKEAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVA 191
           EQ     +P ++   + + L+   +    ++ A E    +       E + ++    +V 
Sbjct: 136 EQSHRTHIPEVHNIHSFKQLISKAEAYDVVIVAYEEEARQGDRTRFAEIIKSLYDKDSVL 195

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++ GPEGG    E + L +   +   SLGPRILR++TA + A++ +
Sbjct: 196 LVFGPEGGISDAEVQALKNFGAIFT-SLGPRILRTETAPLYALSAI 240


>gi|308174332|ref|YP_003921037.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7]
 gi|307607196|emb|CBI43567.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7]
          Length = 256

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS-IRFKV-EYQSRSQTKQSD 81
           +G+  H++A+V+RM  G  I+  + KDG E L  +  + K  I   V E+   ++     
Sbjct: 22  TGEDVHHIANVMRMSAGGRIICCS-KDGHEALCLLKEISKDHISCSVAEWTGENRELPLK 80

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAA 135
           ++      K ++L+++IQK  E+G          R V+    +      +R       AA
Sbjct: 81  IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAA 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSL--EKLHAIAHIPNVA 191
           EQ     +P +    T   LL+  ++   C + + + +   E      +L ++    ++ 
Sbjct: 141 EQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLL 200

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I+ GPEGG    E + L     V    LGPRILR++TA + A++ V
Sbjct: 201 IVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPLYALSAV 245


>gi|24214688|ref|NP_712169.1| hypothetical protein LA_1988 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657777|ref|YP_001863.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|24195677|gb|AAN49187.1|AE011372_3 conserved hypothetical protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601017|gb|AAS70500.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 230

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 18/221 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR--FKVEYQSRSQTKQSDVQY 84
           ++  +L  +    E  N+ + NG   EW+ +I   G S++  FK   ++ +  K   V  
Sbjct: 22  EEISHLKALRIFSEDKNLRVLNGIGTEWIYEIP--GNSVQGIFK---KTITHLKSERVSA 76

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           + + I K NRL++++QK  E+G+     +    +    +N++R +     A+ Q   + L
Sbjct: 77  VATAIPKGNRLEWLLQKGTELGLTHFYFLNFEQSDRKDFNLNRAQKIVEEASIQSKRIFL 136

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P I  P +L EFL+     N  I   D     +   E         N   +IGPEGG+  
Sbjct: 137 PEIVSPVSLKEFLISQKKQNLSIYRLDPQGEWKLKPE------FFQNAIWIIGPEGGFRE 190

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ--AIC 241
           +E   L     +  + +G  IL+ +TA V   +L +   IC
Sbjct: 191 KEILLLQERN-IPGIKVGDTILKIETAVVFTASLFRYSTIC 230


>gi|16800575|ref|NP_470843.1| 16S ribosomal RNA methyltransferase RsmE [Listeria innocua
           Clip11262]
 gi|16413980|emb|CAC96738.1| lin1507 [Listeria innocua Clip11262]
          Length = 255

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           ++R FV++ L       + +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYT 117
            +   V++         ++       K ++L+ +IQKS E+G        A R V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAIAHI--PNVAIL--IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVA 232
              L  +     P  ++L   GPEGG    EKE L        L+ LGPRILR++TA + 
Sbjct: 181 DSVLTNLFQTMKPGQSVLCIFGPEGGIS--EKELLLLQEVNAKLAGLGPRILRTETAPLY 238

Query: 233 AMA 235
            ++
Sbjct: 239 VLS 241


>gi|295406700|ref|ZP_06816505.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8819]
 gi|297245718|ref|ZP_06929583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8796]
 gi|294968447|gb|EFG44471.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8819]
 gi|297177369|gb|EFH36621.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8796]
          Length = 253

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 28  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 86

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 87  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYR 146

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 147 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 206

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 207 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 245


>gi|167769487|ref|ZP_02441540.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM
           17241]
 gi|167668455|gb|EDS12585.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM
           17241]
          Length = 241

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 25/235 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSD 81
           +G+   ++A  LRMK G+ + + +G   ++  +I  +      +R      S  + +   
Sbjct: 17  TGEDARHMALSLRMKIGEAVTVCDGAGRDYQCRIETIAPEQVLLRVGQSAVSAGEPRVEI 76

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             Y   P K ++ + ++QK+VE+G   I PV+T         +     ++R     + AA
Sbjct: 77  TLYQAMP-KGDKFESIVQKAVELGAARIVPVLTHRCVSRPDEKAMRKKLERYNRIALEAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP---N 189
           +QC    +P + P   L F        C+   I+F       EN+ + LH          
Sbjct: 136 KQCGRGRIPQVEP--MLHFSQAVERMKCEPLAILF------YENADQPLHQALRSGVGGR 187

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++++G EGG+   E         +  LSLG RILR +TA VAA+A +    G++
Sbjct: 188 ISLMVGSEGGFEPSEA-GFAVENGLMALSLGSRILRCETAPVAALAAILYAAGEF 241


>gi|323440475|gb|EGA98187.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           O11]
          Length = 250

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADI-TSDKITVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A+  +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALGAI 242


>gi|332296139|ref|YP_004438062.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium
           narugense DSM 14796]
 gi|332179242|gb|AEE14931.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium
           narugense DSM 14796]
          Length = 240

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 17/223 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D+ HYL  VLR+K+ D +++ +G    + S++   G  I    E     + K +   + F
Sbjct: 27  DEKHYLFKVLRLKDDDEVVVLDGAGNIFRSRVK--GDCIILG-EKSDAKEPKLNLTLFQF 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQCDIL-- 141
            P K ++   +I+   E+G   ++  +  Y +   Y   ++++++ +   A E  ++   
Sbjct: 84  LP-KGDKFSEIIRMCTELG---VKKFVLIYGERNSYGEVSLNKIKRWQRIAKEAAELAGR 139

Query: 142 -TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P I  P  L F + +     QIV   E   S  S++ L   A   ++++ IG EGG 
Sbjct: 140 GVVPEILGPYKL-FKVPDELFKGQIVVFWEN--SNQSIKDLFKSAISEDLSLFIGAEGGI 196

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              E E L S      LSLG RILR  TA+V+A +++  +  D
Sbjct: 197 SLNEIEFLKS-KGAYVLSLGERILRVQTASVSACSIMFYLSND 238


>gi|152991316|ref|YP_001357038.1| 16S ribosomal RNA methyltransferase RsmE [Nitratiruptor sp.
           SB155-2]
 gi|151423177|dbj|BAF70681.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 220

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 21/218 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
            G+ Y+Y+  V R ++G+ I + N +DG  L     V  S R  V    +S+ K+ + + 
Sbjct: 17  EGETYNYIFKVRRHRKGETIAIRNMEDGT-LYWYEIVEVSRREAVLELRKSEKKEVEPKR 75

Query: 85  IFSPIKTNRLDYMIQKSV----EMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCD 139
            F  I        ++K++    E+G+  I  V   R  +N    ++++R   I++++QC 
Sbjct: 76  FFHLIWCIVDPKTVEKTLPMLNEIGVSKITFVYCDRSQKNFKLKLEKLRKILINSSQQCG 135

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              L  +    +L+ ++K ++    + F +E     +++E+           +LIGPEGG
Sbjct: 136 RSRLMELEILLSLDEVIKKYNDIVLVDFCEEKLSCTDNVER-----------VLIGPEGG 184

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              EE+     +  +      P +LRS+TAAVA  + V
Sbjct: 185 VTKEERALFEKVKGLDT----PMVLRSETAAVATASKV 218


>gi|170758760|ref|YP_001788269.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405749|gb|ACA54160.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A3
           str. Loch Maree]
          Length = 252

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K S+  
Sbjct: 3   KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q     +     Y++  + K+ ++D ++QKS E+G+  I P+IT   +        
Sbjct: 63  KILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +DR     + A +QC    +P +  P     LL+       IV   E+  +      +
Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPNVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKSLI 182

Query: 182 HAIAHIPNVAILIGPEGGYHSE-EKETLHSLPFVTP--LSLGPRILRSDTAAVAAMALVQ 238
            +I +       IG   G     E+  + +L  +    ++LGPRI R++TA +   +++ 
Sbjct: 183 KSIEYEKENIKNIGIIIGPEGGFEESEIRALEKIKAQIVTLGPRIFRTETAGIVCASIIS 242

Query: 239 AICGD 243
              GD
Sbjct: 243 YELGD 247


>gi|153940109|ref|YP_001392233.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum F
           str. Langeland]
 gi|152936005|gb|ABS41503.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str.
           Langeland]
 gi|295320231|gb|ADG00609.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str.
           230613]
          Length = 252

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 16/248 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K S+  
Sbjct: 3   KFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSVVV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q     +     Y++  + K+ ++D ++QKS E+G+  I P+IT   +        
Sbjct: 63  KILEQVEVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLKEF 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN----S 177
             +DR     + A +QC    +P +  P     LL+       IV   E+   EN    S
Sbjct: 123 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYES--KENYGIKS 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP--LSLGPRILRSDTAAVAAMA 235
           L K           I I        EE E + +L  +    ++LGPRI R++TA +   +
Sbjct: 181 LVKSIEYEKENIKNIGIIIGPEGGFEESE-IRALEKIKAQIVTLGPRIFRTETAGIVCAS 239

Query: 236 LVQAICGD 243
           ++    GD
Sbjct: 240 IISYELGD 247


>gi|304413315|ref|ZP_07394788.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1]
 gi|304284158|gb|EFL92551.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1]
          Length = 271

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 14/209 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   +++ VLRMK+G  + LF+G +  + ++I  + K   F        + ++S +    
Sbjct: 23  DAVKHVSLVLRMKKGQLLHLFDGSNRLFTAEIIRLDKKKVFVRVDAGCVEDRESPLHLHL 82

Query: 87  SPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQC 138
             +  +  R++  IQKSVE+G+  + P+ +         +       + R   I+A EQC
Sbjct: 83  GQVISRGERMELTIQKSVELGVNVLTPLFSERCSIKLSEERLEKKNQQWRKIAIAACEQC 142

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               +P I    +L    +  D + ++    +     N+L        +  + +LIG EG
Sbjct: 143 GRNVIPEIRAAMSLSDWCQQQDDSLKLTLDPQAKKQMNTLP-----LSVDKIRLLIGSEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           G  ++E +   +  F   + +GPRI R++
Sbjct: 198 GLSADEIDMTFNNGF-EGIRMGPRIFRTE 225


>gi|257791397|ref|YP_003182003.1| hypothetical protein Elen_1646 [Eggerthella lenta DSM 2243]
 gi|257475294|gb|ACV55614.1| protein of unknown function DUF558 [Eggerthella lenta DSM 2243]
          Length = 291

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 15/220 (6%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           A VLR+  G++I + +     +  +I+    ++      Q     ++  V  +    K +
Sbjct: 33  ARVLRLAPGEHIAVVDAAQDYFECEIAAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGD 92

Query: 93  RLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +++ +I+ + E+G+ A  P+     I R   +       R R    SAA Q      P +
Sbjct: 93  KMETVIRHATELGVSAFVPMSCERSIVRLDARKAAARTQRWRAIAKSAAMQSGQRACPEV 152

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIPNVAILIGPEG 198
             P  L  +  +  H   ++   E    +  +EK          A+     +A+++GPEG
Sbjct: 153 GEPMALADVCASLAHATAVLVCWEEALLDARIEKALERGLRLDRALPENARIAVVVGPEG 212

Query: 199 GYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E + L +  P  + +SLG  ILR++TA + A ALV
Sbjct: 213 GLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALV 252


>gi|150006102|ref|YP_001300846.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides vulgatus ATCC
           8482]
 gi|254883488|ref|ZP_05256198.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775280|ref|ZP_06740803.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510]
 gi|319641723|ref|ZP_07996406.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A]
 gi|149934526|gb|ABR41224.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836281|gb|EET16590.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450857|gb|EFG19334.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510]
 gi|317386697|gb|EFV67593.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A]
          Length = 233

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + +     +  
Sbjct: 18  EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQEKGWNGWLHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA +Q    T+
Sbjct: 78  AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +   T     +   D   Q   A    G +  L+ +  +    +  ++IGPEG +  E
Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAHCYEGEKPLLKDI--LRSGEDALVMIGPEGDFSEE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E     +  F  P+SLG   LR++TAA+ A
Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223


>gi|319901365|ref|YP_004161093.1| hypothetical protein Bache_1502 [Bacteroides helcogenes P 36-108]
 gi|319416396|gb|ADV43507.1| protein of unknown function DUF558 [Bacteroides helcogenes P
           36-108]
          Length = 232

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK-VEYQSRS 75
           I+ + +   ++  +   VLR++ GD ++L +G    + ++IS   GK    K +E   + 
Sbjct: 9   IEIRSELPEEEAAHAIRVLRLQTGDEVMLTDGNGNFYRAEISTATGKRCSVKIIETLPQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILISA 128

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T    F+ + ++    I      C  +  L     I    +  +L
Sbjct: 129 IKQSLKARLPKLNEMTDFNNFITRPFEGQKFIAH----CHEDEKLLLKEQIRKGEDALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  EE +      F+ P+SLG   LR++TAA+ A
Sbjct: 185 IGPEGDFSEEEVKKALKNGFI-PISLGKSRLRTETAALVA 223


>gi|237709004|ref|ZP_04539485.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457066|gb|EEO62787.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 233

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + +     +  
Sbjct: 18  EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTEAIPQEKGWNGWLHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA +Q    T+
Sbjct: 78  AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +   T     +   D   Q   A    G +  L+ +  +    +  ++IGPEG +  E
Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAHCYEGEKFLLKDI--LRSGEDALVMIGPEGDFSEE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E     +  F  P+SLG   LR++TAA+ A
Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223


>gi|265755568|ref|ZP_06090189.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234174|gb|EEZ19767.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 233

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + +     +  
Sbjct: 18  EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQEKGWNGWLHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA +Q    T+
Sbjct: 78  AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +   T     +   D   Q   A   C     L     +    +  ++IGPEG +  E
Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAH--CYEGEKLLLKDILRSGKDALVMIGPEGDFSEE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E     +  F  P+SLG   LR++TAA+ A
Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223


>gi|241895699|ref|ZP_04782995.1| protein of hypothetical function DUF558 [Weissella
           paramesenteroides ATCC 33313]
 gi|241871066|gb|EER74817.1| protein of hypothetical function DUF558 [Weissella
           paramesenteroides ATCC 33313]
          Length = 246

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-----SRSQTKQS---D 81
           H+   VLR +EG           E +     V K +RF+ E       SR +T      D
Sbjct: 23  HHFITVLRSREGAQAEFVLPNQHEVI-----VAKIVRFEAEQAIMAVISRQETSVELPVD 77

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAE 136
              +    K ++ + ++QK+ E+G   I  V T ++     Q     + R+     +AAE
Sbjct: 78  TTIVIGLSKGDKPEMVVQKATELGAHHIVVVETAWSVVHWGQKATKKLVRLNKIAAAAAE 137

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE---KLHAIAHIPNVAIL 193
           Q   L +P +   ++L+ L+   D   ++V  +E+     + E   +L+ +    +V  L
Sbjct: 138 QAHRLRIPDVTYESSLDGLM--IDATVKLVAWEESAKQGETGELVRQLNRLQPDDSVCFL 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            GPEGG   +E + L    FV P  LGPRILR++TA + A++++
Sbjct: 196 FGPEGGLSPQEIDVLVGQGFV-PAGLGPRILRAETAPLYALSVL 238


>gi|212692063|ref|ZP_03300191.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855]
 gi|237724658|ref|ZP_04555139.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212665455|gb|EEB26027.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855]
 gi|229436853|gb|EEO46930.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 233

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + +     +  
Sbjct: 18  EEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQEKGWNGWLHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA +Q    T+
Sbjct: 78  AMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSAVKQSLKATM 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +   T     +   D   Q   A   C     L     +    +  ++IGPEG +  E
Sbjct: 138 PVLNEMTDFNKFVSR-DFKGQKFIAH--CYEGEKLLLKDILRSGEDALVMIGPEGDFSEE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E     +  F  P+SLG   LR++TAA+ A
Sbjct: 195 EVAKAIAAGF-QPVSLGKSRLRTETAALVA 223


>gi|313623733|gb|EFR93877.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua
           FSL J1-023]
          Length = 255

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 15/224 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEDEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L ++     P  ++L 
Sbjct: 140 QSHRTVVPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSVLASLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTAAVAAMA 235
             GPEGG    EKE L        L+ LGPRILR++TA +  ++
Sbjct: 200 IFGPEGGIS--EKELLLLQEVNAKLAGLGPRILRTETAPLYVLS 241


>gi|145356785|ref|XP_001422606.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582849|gb|ABP00923.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 246

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 35/256 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           L R +VD           S ++  +    LR+K GD + + +G+    ++++  V G   
Sbjct: 1   LHRFYVDADFARGAAVTLSREETRHATKALRLKPGDRLEVCDGRGTLGIARLCAVDGVGA 60

Query: 66  RFKVE---YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-------- 114
             +VE     +       DV   F  +K  R D++++K  E+G   + P++T        
Sbjct: 61  TVEVEEMVADALGSGTAWDVASAFGGLKGGRGDWLVEKCAELGARTLVPLLTTRSGAIGG 120

Query: 115 --RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
             R          R      +A++Q   +    + PP  +E L       C+ +  D  C
Sbjct: 121 GDRDGDKKRGREGRWGRVAHAASKQSLRVYGLQVAPPIGVEAL-------CEEIAKD--C 171

Query: 173 GSENSLEKLHAIAHIPNVA-----------ILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           G   +L        I +VA           I+IGPEG +  EE + + +     P+ LG 
Sbjct: 172 GERLTLLAAAGAPPIADVARASGLDLRSGRIVIGPEGDFTDEELKAMIA-AGARPVGLGS 230

Query: 222 RILRSDTAAVAAMALV 237
             LR +TAA++A+A V
Sbjct: 231 LRLRVETAAISALAAV 246


>gi|283851945|ref|ZP_06369221.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B]
 gi|283572669|gb|EFC20653.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B]
          Length = 249

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 16/213 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+   VLR + G+ +  F+G   E L  I  V +  R ++E  S ++  + + + 
Sbjct: 23  TGGEAHHCVRVLRKRPGEVVRAFDGLGREGLFTIMDVARD-RVELEVLSVTEAPRPECRL 81

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV--RTYT---ISAAEQ 137
             +    ++ R D+ ++KSVE+G   I   +    +++   M  V    +T   ++AA+Q
Sbjct: 82  HLAAGFSRSARRDFFLEKSVELGAAGI---VFWQAEHSQGRMPAVPKEAWTATLVAAAKQ 138

Query: 138 CDILTLPF--IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           C    LP   + P             + + +   E  G    L  L  +A   N   ++G
Sbjct: 139 CGAARLPALSVVPGGAAGLAALGSGFDRRYLLW-EAPGLSRRL-ALADVAVPGNALFVLG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           PEGG    E ET  S  F   LSLG R+LR +T
Sbjct: 197 PEGGLTDAEAETCVSAGFAA-LSLGDRVLRWET 228


>gi|147845297|emb|CAN83371.1| hypothetical protein VITISV_034944 [Vitis vinifera]
          Length = 259

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 20/214 (9%)

Query: 39  KEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIK------- 90
           ++G  + LFNGK G     I+ + ++ + F      +    QS   ++F+          
Sbjct: 35  EDGKWVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFDFAITCLQ 94

Query: 91  --------TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDIL 141
                     R D++++K  E+G  ++ P++T  + +   N +DR++   ++AA+QC  L
Sbjct: 95  LLLLGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRL 154

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
               + PPTT++ LL     +   + A     +      L +        ++IGPEG + 
Sbjct: 155 HEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPEGDFT 212

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +E   +      T + LGP  LR +TA +A +A
Sbjct: 213 EKELNMMRE-AGATAVGLGPHRLRVETATIALLA 245


>gi|256027910|ref|ZP_05441744.1| putative cytoplasmic protein [Fusobacterium sp. D11]
 gi|289765859|ref|ZP_06525237.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289717414|gb|EFD81426.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 235

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87
           +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    + +   +V    S
Sbjct: 23  NHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLDIEVDAGIS 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         DR  T +  A +QC  +    I
Sbjct: 82  ILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQCQGVVPTVI 141

Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
                ++ L LK++D       N + VF  +    +N   K   I +I      IG EGG
Sbjct: 142 DEIKKIDKLNLKDYDLILVPYENEKKVFIKDIL--KNLKVKPTKILYI------IGAEGG 193

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  EE + L        +SLG RILR++TAA+    ++
Sbjct: 194 FEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|284801857|ref|YP_003413722.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578]
 gi|284994999|ref|YP_003416767.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923]
 gi|284057419|gb|ADB68360.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578]
 gi|284060466|gb|ADB71405.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923]
          Length = 255

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L  +     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229
             GPEGG    EKE +        L+ LGPRILR++TA
Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235


>gi|291320322|ref|YP_003515584.1| hypothetical protein MAGa4150 [Mycoplasma agalactiae]
 gi|290752655|emb|CBH40628.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 227

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 17/158 (10%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYN--MDRVRTYTISAAEQCDILT 142
           IK  R ++++QK+ E+G+  I P+ +++   T     +N  +DR      +AAEQ     
Sbjct: 75  IKIKRFEWLLQKATELGVSRIIPMSSKFVDQTIIKYEFNKKIDRFNEIIKNAAEQSFRNV 134

Query: 143 LPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           +P +   TT  E +L N D   +I  A E    E+ ++K+       N  +++GPEGG  
Sbjct: 135 VPKLEKITTFEEIILSNQDK--KIYVAYENKEVESQIDKIET-----NSILIVGPEGGLS 187

Query: 202 SEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             E +  L +  F+  +SLG  ILR++TA +  ++ V+
Sbjct: 188 KAEIDFALQNNCFI--VSLGKTILRAETACMYMLSNVR 223


>gi|172056822|ref|YP_001813282.1| hypothetical protein Exig_0784 [Exiguobacterium sibiricum 255-15]
 gi|171989343|gb|ACB60265.1| protein of unknown function DUF558 [Exiguobacterium sibiricum
           255-15]
          Length = 248

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 19/245 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--S 64
           ++R FV+           S D  H++ +V+RM  GD IL+ +G  G +  ++  + K  +
Sbjct: 1   MQRYFVEQTARAGNTFTLSKDDAHHIKNVMRMDVGDEILVLDGT-GLFRCRLEQLDKQTA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +   +E           V   ++  K ++++ + QK+ E+G+  +      R V     +
Sbjct: 60  VAELLEELPIETELPIHVTIAYALPKGDKVELVAQKATELGVSRLLVFESARSVSKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFAD-----ETC 172
                ++R++  +  AAEQ     LP I   T  E L    D+  C I + +     E  
Sbjct: 120 KIPKKLERLQKISKEAAEQSYRAHLPTIEYVTYDEVLQCAADYTACLIAYEESAKEGEAA 179

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              ++L +L +     ++ ++IGPEGG    E   L +  FV P SLG RILR++TA + 
Sbjct: 180 AFASTLSRLQS---GDSLLVVIGPEGGLTETEVTRLTAGGFV-PASLGRRILRTETAPLY 235

Query: 233 AMALV 237
            ++ V
Sbjct: 236 VLSAV 240


>gi|327314423|ref|YP_004329860.1| RsmE family RNA methyltransferase [Prevotella denticola F0289]
 gi|326944161|gb|AEA20046.1| RNA methyltransferase, RsmE family [Prevotella denticola F0289]
          Length = 259

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 24/228 (10%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSD-VQYIFSPIK- 90
            VLR+KEGD + L +G+   + +++     K   + +    R +   S  +    +P K 
Sbjct: 28  RVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYTIRQTMRQKPAWSGRIHLAIAPTKD 87

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             R+++M +K+ E+G   I  +  R+++      DR+    +SA +Q      P + P +
Sbjct: 88  MGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADRIEKIVVSAVKQSRKGWKPLVNPMS 147

Query: 151 TLEFLLKNWDHN-----C----QIVFADETCGSENSLEK-------LHAIAHIP----NV 190
           +    ++N         C    +I   D      ++L+        L A    P    ++
Sbjct: 148 SFSSFVENCPDKGRKFICHCYPEIPRTDFFTAITSALQPGIFLQNGLEAQKEHPSGAADI 207

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +LIGPEG +  EE     +  F + ++LG   LR++TA ++A+ + Q
Sbjct: 208 TVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRTETAGLSAVMMSQ 254


>gi|300727240|ref|ZP_07060656.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14]
 gi|299775478|gb|EFI72072.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14]
          Length = 243

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 101/224 (45%), Gaps = 18/224 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ-SRSQTKQSDVQY 84
           D+ ++   VLR++ GD + L +G    + ++++    K   +++     + +  +  +  
Sbjct: 21  DEANHALRVLRLQSGDQMFLMDGNGAFYEAEVTLASSKHCHYRITNTLVQEKAWKGKIHL 80

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K   R+++M +KS E+G+     +  ++++      +R+    +SA +Q     +
Sbjct: 81  GIAPTKMMERIEWMAEKSTEIGIDEFSFLHCKFSERKVLKKERIEKIVVSAMKQSRKPWM 140

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK---------LHAIAHIPNVAILI 194
           P ++  T     +       + +     C   N +EK         L     +P V IL+
Sbjct: 141 PVVHEMTAFRDFIDAHTTGHRYI-----CHCYNEIEKKDLYTELLLLAKDEAVPEVTILV 195

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  +E     S  F + +SLG   LR++TA ++ + + Q
Sbjct: 196 GPEGDFSIDEVNYALSQGFES-VSLGNARLRTETAGLSGVMMAQ 238


>gi|255007829|ref|ZP_05279955.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis
           3_1_12]
 gi|313145535|ref|ZP_07807728.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134302|gb|EFR51662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 229

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS    + R  V  +     
Sbjct: 9   IQTNAELPEEEAQHCVRVLRLTAGDEITLTDGKGNFYRAEIS-AATNKRCLVNIKETIHQ 67

Query: 78  K---QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
           +   +  +    +P K  +R +++ +K+ E+G   +  +  R+++      +R+    +S
Sbjct: 68  EPLWEGHLHIAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A +Q     LP +   T     ++  D + Q   A    G +  L+ +  +    +  +L
Sbjct: 128 AIKQSLKARLPRLNEMTDFNSFIEK-DFSGQKFIAHCYEGEKPLLKDV--LKKGEDTLVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  EE +      F+ P+SLG   LR++TAA+ A
Sbjct: 185 IGPEGDFSEEEVKKAIEKGFI-PISLGKSRLRTETAALVA 223


>gi|108804350|ref|YP_644287.1| hypothetical protein Rxyl_1513 [Rubrobacter xylanophilus DSM 9941]
 gi|108765593|gb|ABG04475.1| protein of unknown function DUF558 [Rubrobacter xylanophilus DSM
           9941]
          Length = 242

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++ H+L  VLR   G+     +     +++++     +   ++  ++ ++ +     Y  
Sbjct: 21  EEDHHLRRVLRAGPGERFEAVDAAGRLFMAELREGASAEAVELLREAGAEERAEVWLYQA 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILTLP 144
            P K  R+D +++K+ E+G+  I P++   +  +     ++R R    SAA Q   L +P
Sbjct: 81  VP-KGKRMDLVVEKATEVGVAGIAPLVCERSVVRPGDNKVERWRRIAESAARQALRLRVP 139

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +  P      ++       ++       +   L+ L   A    VA+L+GPEGG+   E
Sbjct: 140 EVREPVAFREAVREVGGRGVLLH------NGPGLDPLEERAR-GAVALLVGPEGGWSGAE 192

Query: 205 -KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +E L     ++   LGP  LRS+TA V A+A ++A+
Sbjct: 193 IEEALRC--GLSLAQLGPFRLRSETAGVVAVARMRAV 227


>gi|189460815|ref|ZP_03009600.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136]
 gi|189432389|gb|EDV01374.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136]
          Length = 232

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   +    +  +  
Sbjct: 18  EEAGHCLRVLRLTVGDEIMLTDGKGCFYRAAISAATGKRCQVKVNEVIPQEPFWKGHLHL 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R+++ ++K+ E+G   +  +  R+++      +R+    +SA +Q      
Sbjct: 78  AMAPTKNMDRIEWFVEKATEIGFDELSFLNCRFSERKVIKTERIEKIVVSAIKQSLKARK 137

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P +        F+ + +     I    E    E  L K   +    +  +LIGPEG +  
Sbjct: 138 PVVNEMVDFGRFMQREFAGQKFIAHCYE---GEKPLLK-DVLQPGEDAVVLIGPEGDFSR 193

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           EE E   ++ F + +SLG   LR++TAA+ A+
Sbjct: 194 EEVEKAEAMGFRS-ISLGKSRLRTETAALVAV 224


>gi|307564915|ref|ZP_07627435.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A]
 gi|307346355|gb|EFN91672.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A]
          Length = 265

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 31/243 (12%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           +K   +   ++  +   VLRMK+GD + L +G    + ++++       F    ++  Q 
Sbjct: 12  VKNSTELPAEEMVHAVRVLRMKQGDELFLMDGAGYFYRAQVTMTSAKHCFYTIKEALYQK 71

Query: 78  K--QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           K  +  +    +P K   R++++ +K  E+G+  I  +  R+++     +DR+    ISA
Sbjct: 72  KNWRGHIHLAIAPTKDIGRIEWLAEKVTEIGIDEITFLSCRFSERKQLRIDRIEKIIISA 131

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIP--- 188
            +Q      P +   T+  +F+ K        V A      + S+ K   H    I    
Sbjct: 132 MKQSRKGWKPIVNEMTSFGDFIRK--------VSATTYSNKKPSINKFICHCYEEIKKKD 183

Query: 189 -------------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                        +V ILIGPEG +  EE +   +  F   ++LG   LR++TA ++A+ 
Sbjct: 184 LFSLLTKRNALERDVLILIGPEGDFSVEEVDLALANGF-QSVTLGDSRLRTETAGLSAVT 242

Query: 236 LVQ 238
           + Q
Sbjct: 243 MAQ 245


>gi|325110548|ref|YP_004271616.1| ribosomal RNA small subunit methyltransferase E [Planctomyces
           brasiliensis DSM 5305]
 gi|324970816|gb|ADY61594.1| Ribosomal RNA small subunit methyltransferase E [Planctomyces
           brasiliensis DSM 5305]
          Length = 248

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 13/213 (6%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           + H+L +V+R K G  + +FNG DG  L     V ++ + K   Q  + +++ D   +  
Sbjct: 22  EAHHLLNVMRAKPGAEVEVFNG-DG--LVASVVVTEASKRKALLQPVAGSQRQDPNGLSI 78

Query: 88  PI-------KTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQC 138
           P+       K++R  ++++K  E+G+  + P+ T  +        +++ + Y + A +Q 
Sbjct: 79  PLTLATAVPKSDRFRWLVEKGTELGVTRLVPLKTSRSVVSPRESKLEKQQQYVVEACKQS 138

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              TL  I     L   L        ++          SL           V + +GPEG
Sbjct: 139 GRNTLMEIGTLVDLADYLGQLPPESLLLTGAPAVVDSKSLWSELVETRPAEVVLFVGPEG 198

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           G+  EE + L +     P+S+GP +LR++TA +
Sbjct: 199 GFTPEE-DALLAEHGAKPISVGPYVLRTETAGL 230


>gi|303256695|ref|ZP_07342709.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47]
 gi|330999335|ref|ZP_08323052.1| putative 16S rRNA methyltransferase RsmE [Parasutterella
           excrementihominis YIT 11859]
 gi|302860186|gb|EFL83263.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47]
 gi|329575193|gb|EGG56744.1| putative 16S rRNA methyltransferase RsmE [Parasutterella
           excrementihominis YIT 11859]
          Length = 236

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 30/231 (12%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY------QSRSQTKQS 80
           +  H+   VLRM++GD + +FNGK          V  +IRF  ++      +   Q +  
Sbjct: 22  EAVHHAMRVLRMRQGDAVEVFNGKG-------CAVKGTIRFATDFAEVIPQEVIMQPRGL 74

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134
            +  + + +   ++D++I+K+ E+G   I      R  +    +     ++R     +SA
Sbjct: 75  KLVLMQALVANEKMDWIIEKACELGYAEIAVFPSERGEVRLTCEKAVKRVERWNKIAVSA 134

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193
            +QC    LP I   ++L+       H   + F     G      K +     P  V   
Sbjct: 135 CQQCGENYLPNIRFCSSLK---DAAAHAEGLKFVLSPIG------KTYDSPDTPTAVTFA 185

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG   +E  TL    F +   LG R+LR++TAA+AA +  Q + GD+
Sbjct: 186 VGPEGGLSPKEINTLIESGFYS-CKLGNRVLRTETAALAAASFAQTLWGDF 235


>gi|319937482|ref|ZP_08011887.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1]
 gi|319807322|gb|EFW03931.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1]
          Length = 244

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 115/241 (47%), Gaps = 15/241 (6%)

Query: 7   LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F+D   C+K +  +     + ++  V+R   GD ++        ++ +I  +   +
Sbjct: 1   MQRYFID-EKCLKDEEIRIDAYNHKHMQRVMRYHNGDQVICILPSAKTYIYEIIDIETGL 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             +VE    +     +V  I+   K+++ ++++QK+ E+G+  I P +++ +      + 
Sbjct: 60  LKRVEELHENHELDVNVTLIYGLPKSDKFEWVLQKATELGVKRIVPFLSKRSIIKTDAKT 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R +     A+EQ     +P +    T++  L  +  +  +V  +E   S+   E
Sbjct: 120 FSKKEERYQRILKEASEQSYRQMIPELTQLITIKD-LSQYLSDINLVAYEE--ASKRGEE 176

Query: 180 KLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              A A   N   + I++GPEGG+   E E + +L  +   SLG RILRS+TA +  +++
Sbjct: 177 CCFASALKQNYQTLTIIVGPEGGFDQSEIEQMKALG-IQECSLGKRILRSETAPLYMLSV 235

Query: 237 V 237
           +
Sbjct: 236 I 236


>gi|258405682|ref|YP_003198424.1| 16S ribosomal RNA methyltransferase RsmE [Desulfohalobium retbaense
           DSM 5692]
 gi|257797909|gb|ACV68846.1| protein of unknown function DUF558 [Desulfohalobium retbaense DSM
           5692]
          Length = 244

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 24/224 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84
           G ++ +L   LR+  GD + L NG+      +I  + GK  R  VE  +    + S +  
Sbjct: 23  GQEFTHLRKALRLGPGDAVQLTNGRGDVADGRIEAIQGKKARITVESITSVDRRDSQIVV 82

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT--------ISAAE 136
                K+ R  + ++K+ E+    +      Y     ++  R+   T        ++ A+
Sbjct: 83  AVGWAKSLRRGWFLEKAAELEARGV------YLWQAEHSQGRIPDATKANWQGQLVAGAK 136

Query: 137 QCDILTLPF--IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IAHIPNVAI 192
           Q     LP   ++P    E L    D + +    +     E      H   +A       
Sbjct: 137 QSGNPWLPELEVFPGGLAELLEATADIDHRFFLWENATAEEG----FHPPPLADGERALA 192

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           ++GPEGG+   E E L +   V P+SLG R+LR +TAA+  + L
Sbjct: 193 ILGPEGGFADSEVELLRAH-NVRPVSLGRRVLRWETAALLCLGL 235


>gi|253826777|ref|ZP_04869662.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT
           98-5491]
 gi|313142210|ref|ZP_07804403.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510183|gb|EES88842.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT
           98-5491]
 gi|313131241|gb|EFR48858.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 220

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 20/217 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           G+ YH+L H  R K+ +++ L N +D       ++ +S    ++R + + ++ SQ   S 
Sbjct: 18  GEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKYATLRLESKLETPSQNP-SK 76

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDI 140
              I++ I    ++  +    E+ +  I     +Y+Q N   N++R++    ++  QC  
Sbjct: 77  GHLIWAMIDPKIIEKTLPFLNELNIYKISFFYAQYSQKNFKLNLERIQKILENSCMQCGR 136

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           +TL  I     L+ +L+ + +   + F  +    E+SLE          + IL+G EGG+
Sbjct: 137 ITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--ESSLE----------IPILVGAEGGF 184

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +E+E L S P  T  ++   ILRS+TA + AM+ +
Sbjct: 185 SPQERELLKSNPKYT--AIHSNILRSETATIYAMSKI 219


>gi|224418688|ref|ZP_03656694.1| 16S rRNA m3U1498 methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 235

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 20/217 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           G+ YH+L H  R K+ +++ L N +D       ++ +S    ++R + + ++ SQ   S 
Sbjct: 33  GEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKYATLRLESKLETPSQNP-SK 91

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDI 140
              I++ I    ++  +    E+ +  I     +Y+Q N   N++R++    ++  QC  
Sbjct: 92  GHLIWAMIDPKIIEKTLPFLNELNIYKISFFYAQYSQKNFKLNLERIQKILENSCMQCGR 151

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           +TL  I     L+ +L+ + +   + F  +    E+SLE          + IL+G EGG+
Sbjct: 152 ITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--ESSLE----------IPILVGAEGGF 199

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +E+E L S P  T  ++   ILRS+TA + AM+ +
Sbjct: 200 SPQERELLKSNPKYT--AIHSNILRSETATIYAMSKI 234


>gi|253580713|ref|ZP_04857977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848084|gb|EES76050.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 248

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 46/259 (17%)

Query: 7   LKRLFVDFPLCIKTQG---KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R FV+ P  I+ +      +G   +++ +VLRMK G+++ + +G D E+  +I  +G+
Sbjct: 1   MQRFFVE-PYQIEKEAHRIHINGTDVNHIKNVLRMKCGEDVWISDGGDKEYHCQIEELGE 59

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY----- 116
             +   + Y    + +  +  Y+F  + K ++++ +IQK+VE+G  +I PV T+      
Sbjct: 60  DEVLLHILYAQEPEYELPNKIYLFQGLPKADKMELIIQKAVELGAFSIIPVETKRCVVKL 119

Query: 117 -TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADET 171
             +     + R +    SAA+Q   + +P I+   T    LEF  K  D   +++  +  
Sbjct: 120 DVKKAAKKVVRWQQIAESAAKQSKRMLIPEIHEVMTYKQALEF-AKQLD--VKLIPYELA 176

Query: 172 CGSENSLEKLHAIAHIPNVAILI-------------GPEGGYHSEEKETLHSLPFVTPLS 218
            G + + E L  I    +V I I               E G H+              ++
Sbjct: 177 KGMKETREILSEIKPGQSVGIFIGPEGGFEEEEVAKALEAGAHA--------------IT 222

Query: 219 LGPRILRSDTAAVAAMALV 237
           LG RILR++TA +A ++++
Sbjct: 223 LGRRILRTETAGLAILSVL 241


>gi|237744246|ref|ZP_04574727.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431475|gb|EEO41687.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 22/219 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87
           +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    + +   +V    S
Sbjct: 23  NHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLDIEVDAGIS 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         DR  T +  A +QC  +    I
Sbjct: 82  ILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQCQGVVPTVI 141

Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEG 198
                ++ L LK++D       N + +F  +          L  +   P  +  +IG EG
Sbjct: 142 DEIKKIDKLNLKDYDLILVPYENEKKIFIKDI---------LRNLKVKPTKILYIIGAEG 192

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 193 GFEKEEIDYLKE-SGAKIISLGKRILRAETAAIVTGGVI 230


>gi|325831347|ref|ZP_08164601.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1]
 gi|325486601|gb|EGC89049.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1]
          Length = 291

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 15/220 (6%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           A VLR+  G++I + +     +  +I+    ++      Q     ++  V  +    K +
Sbjct: 33  ARVLRLAPGEHIAVVDAAQDYFECEITAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGD 92

Query: 93  RLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           +++ +I+ + E+G+ A  P      ++    +       R R    SAA Q      P +
Sbjct: 93  KMETVIRHATELGVSAFVPMSCERSIVRLDAKKAAARTQRWRAIAKSAAMQSGQRACPEV 152

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--------HAIAHIPNVAILIGPEG 198
             P  L  +     H   ++   E    +  +EK          A+     +A+++GPEG
Sbjct: 153 GEPMALADVCAFLAHATAVLVCWEEAPLDARIEKALERGLRLDRALPENARIAVVVGPEG 212

Query: 199 GYHSEEKETLHSL-PFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E + L +  P  + +SLG  ILR++TA + A ALV
Sbjct: 213 GLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALV 252


>gi|116872901|ref|YP_849682.1| hypothetical protein lwe1485 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741779|emb|CAK20903.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 255

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++  V+RMKE D + +        ++ I+ +     +   V++   +     ++
Sbjct: 20  TGENFHHITRVMRMKEADQVFIVFPSKKTCVATITAINDEEVVLNLVKWLEENTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V     +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVAKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----PNVAI 192
           Q     +P +    + + L+ N  H   ++ A E    E     L ++        +V  
Sbjct: 140 QSHRTVIPEVQYAASFKELMLNHVHYDYVIAAYEESAREGEDSALPSLFQTMKKGQSVLC 199

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + GPEGG  SE++  L      T   LGPRILR++TA +  ++
Sbjct: 200 IFGPEGGI-SEKELILLQDANTTLAGLGPRILRTETAPLYVLS 241


>gi|331270009|ref|YP_004396501.1| hypothetical protein CbC4_1830 [Clostridium botulinum BKT015925]
 gi|329126559|gb|AEB76504.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
           BKT015925]
          Length = 251

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 21/234 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
            G+   ++  VLR+KEG+ + + N    E+L  I Y+ K+   KVE +   + K ++   
Sbjct: 19  EGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKT---KVEVKLVEELKVNNEPP 75

Query: 84  ---YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-------HYNMDRVRTYTI 132
              Y+F  + K+ ++D + QK  E+G+  I P++T    ++          +DR      
Sbjct: 76  IEVYLFQGLPKSTKMDLITQKCTELGIKEITPIVTSRVSSSINDIKRESKKIDRWNRIAF 135

Query: 133 SAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIPN 189
            A +Q     +P +   T  + F  K  D +  +V  +  E  G +   + L     +  
Sbjct: 136 EACKQNKRTLIPIVNDITDFDGFTAKLKDMDLIVVPYENAENYGIKQMTKGLK--GEVKK 193

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +AI+IGPEGG+  EE  +L +      ++LGPRILR++TA    +AL+    GD
Sbjct: 194 IAIVIGPEGGFEEEEITSLKN-KGAHIVTLGPRILRTETAGFTCLALLMYELGD 246


>gi|225164644|ref|ZP_03726886.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
 gi|224800744|gb|EEG19098.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
          Length = 263

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 20/229 (8%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDV 82
           + H+L  V R + GD +++F+G+  EW   ++   K     ++    +    + +    V
Sbjct: 32  ESHHLVVVNRARAGDPVVVFDGRGREWTGTLAEANKRAAVIAVGTDAQAGRLAPSLPCAV 91

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136
               +  K   +D +++ + E+G+  I P+ +  TQ       +   +++ R   + A +
Sbjct: 92  TLAQALPKGGVMDDIVRHATELGVTRIVPLESARTQVHLDGGRSDKKLEKWRAGALEACK 151

Query: 137 QCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAI-- 192
           QC    LP I P   L EFL +      ++V A    G+ +  E +  A A  P   I  
Sbjct: 152 QCGNPWLPEIAPVRGLAEFLREVGAAELRLV-ASLHPGARHVREVVAEARAANPTRTIKS 210

Query: 193 ---LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              L+GPEG   +EE +   +  F   ++LG  +LR DTAA  A++++ 
Sbjct: 211 AIWLVGPEGDLTAEEIDAALAAGF-QAVTLGALVLRCDTAATYALSVLN 258


>gi|217967714|ref|YP_002353220.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724]
 gi|217336813|gb|ACK42606.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 27/226 (11%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGK--SIRFKVEYQSRSQTKQSDV 82
           D +H + +VLR++EG+ I      D  + SKI  +YV K    R   +   +   K+++V
Sbjct: 23  DIFH-MVNVLRIREGEKI------DVNYNSKIFRAYVEKIEEDRVICKIIEKIGNKEANV 75

Query: 83  Q-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPV--------ITRYTQNTHYNMDRVRTYTI 132
           + Y+   + K    + +++K  E+G+    P+        ++R   N  Y   R      
Sbjct: 76  EVYLCQSLPKKESWEIILEKCTEIGVVGFIPLQTQRSIVNLSRDELNKKY--QRWNKVIK 133

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
            A +QC    LP +Y   TLE  L      N  I+ A E  G+E SL+ +        + 
Sbjct: 134 EAVKQCGRNKLPLLYKVQTLEESLNLAKKENADILIAWE--GAELSLKNIIRNNIRDKIF 191

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + IGPEG +  EE   +     +   ++GPRIL+ +TAA+ A AL+
Sbjct: 192 LFIGPEGSFTDEEINLMKKYNGIF-FNMGPRILKVETAAIVASALL 236


>gi|82751180|ref|YP_416921.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           RF122]
 gi|82656711|emb|CAI81138.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 250

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R   G  I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVGSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +   V   ++            ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMEHSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|237785905|ref|YP_002906610.1| hypothetical protein ckrop_1323 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758817|gb|ACR18067.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 299

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 19/234 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRSQTKQSD-- 81
           +G +  +   V R+  GD+++L NG +G+WL   +       R +        T  S   
Sbjct: 67  TGSEGRHAVTVKRLVAGDSLVLVNG-EGDWLRCTVESTPSKTRLRATVLEAGHTPMSTPP 125

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136
           +  + +  K++R +  +  + + G  AI P      I R+         +     +++++
Sbjct: 126 ITVVQALPKSDRSELAVDLACQAGADAIVPWSASRSIARWKGKEKKAGGKWADTAVASSK 185

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCGSENSLEKLHAIAHIPNV 190
           Q     LP I   +T + ++   +   Q      ++   E+    +  E L   + I   
Sbjct: 186 QSRRARLPRIAALSTTDDVVNAIEQVTQSGGLALVLEESESVRVTSLAENLRQASQI--- 242

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +++GPEGG   +E +        T + LGP +LR+ TAA  A+  V  +CG W
Sbjct: 243 MLIVGPEGGIAPDEHDAFVRA-GATSVVLGPEVLRTATAASVALGAVNVLCGRW 295


>gi|148270532|ref|YP_001244992.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga petrophila
           RKU-1]
 gi|281412840|ref|YP_003346919.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10]
 gi|147736076|gb|ABQ47416.1| protein of unknown function DUF558 [Thermotoga petrophila RKU-1]
 gi|281373943|gb|ADA67505.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10]
          Length = 222

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 109/213 (51%), Gaps = 20/213 (9%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYIF 86
           + H++  V+R+KEGD I   +GK   +   +  + K +   ++      + K ++   + 
Sbjct: 20  ETHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKVATARIVKAEEKEKKSAEKLSVV 78

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLP 144
            PI +  R  ++I+K VE+G+  I     ++ ++ H  ++D+ +     +A+QC      
Sbjct: 79  VPIGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKTKIVVRESAKQCR----R 132

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           +++P  +    L+  + +  ++  D    S+N L+    +    ++ +++GPEGG+  +E
Sbjct: 133 YLFPKVSF---LEKLELSGNVITLD-LDASQNLLD----VNLEGSITVVVGPEGGFSEKE 184

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 185 RELLRS--STTVVSLGKKILRFETAAILTVGYI 215


>gi|283479683|emb|CAY75599.1| UPF0088 protein yggJ [Erwinia pyrifoliae DSM 12163]
          Length = 205

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 20/182 (10%)

Query: 73  SRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR-- 128
           SR  +++S +      +  +  ++++ IQK+VE+G+  I P+   +++     +D  R  
Sbjct: 31  SREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPL---FSERCGVKLDAERLA 87

Query: 129 -------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
                     I+A EQC    +P +     L+      +   ++        S N+L   
Sbjct: 88  KKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINTLP-- 145

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                +  V +LIGPEGG  ++E  T+ +    T + LGPR+LR++T A+ A+  +Q   
Sbjct: 146 ---LPVERVRLLIGPEGGLSADEI-TMTAQHGFTDILLGPRVLRTETTALTAITALQVRF 201

Query: 242 GD 243
           GD
Sbjct: 202 GD 203


>gi|19704550|ref|NP_604112.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714836|gb|AAL95411.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 235

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 28/239 (11%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68
           ++ DF L I      +GD  H + +  R  +GD I   +G + E+L +I  +  K I+ K
Sbjct: 9   IYDDFILVI-----DAGDINH-IKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLK 61

Query: 69  VEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDR 126
           +  +   + +   +V    S +K +++D  IQK  E+G+  I P+ + R         DR
Sbjct: 62  ILEKIEDKFSLDIEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDR 121

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLE 179
             T +  A +QC  +    I     +  L  K++D       N + +F  E         
Sbjct: 122 WDTISKEALKQCQGVVPTVIDEIKKINKLNFKDYDLILVPYENEKEIFIKEI-------- 173

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            L  +   P+ +  +IG EGG+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 174 -LRDLKIKPSKILYIIGAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|256827194|ref|YP_003151153.1| hypothetical protein Ccur_07670 [Cryptobacterium curtum DSM 15641]
 gi|256583337|gb|ACU94471.1| conserved hypothetical protein TIGR00046 [Cryptobacterium curtum
           DSM 15641]
          Length = 260

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 19/232 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           D++H  A VLR+  G+++ + +     +  +I S+    +  ++   + +   +  V  +
Sbjct: 29  DEHH--ARVLRLAAGEHVAVVDAAQDYFECEIVSFYAAGMCVRIAAHNSASVDRPQVCLL 86

Query: 86  FSPIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
               K +++D +I+ + E+G      +   R V+       H  + R R    SAA Q  
Sbjct: 87  QGISKGDKVDVVIRHATELGVTQFVPLACERSVVKLDGDKAHKRVGRWRAIAKSAAMQSG 146

Query: 140 ILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCG---SENSLEKLH----AIAHIPNVA 191
              +P +  P   + + +   D  C ++  +E  G   SE   + L       AH   VA
Sbjct: 147 QPRIPEVTLPYRCDEVAEILSDATCILICWEEAHGVGVSEAIAQALQLSGQTAAH-ARVA 205

Query: 192 ILIGPEGGYHSEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           ++IGPEGG    E +  LH  P    ++LG  ILR++TA + A AL  +  G
Sbjct: 206 LVIGPEGGLTQHEVDYFLHMGPPAYAVTLGSSILRTETAGIVAPALALSTLG 257


>gi|315640054|ref|ZP_07895179.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315484182|gb|EFU74653.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 257

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 17/221 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK---VEYQSRSQTK 78
           + +G+ +H++  V+RM+ G+++ L    D    ++I  V   ++  K   +E   R    
Sbjct: 18  EVTGEPFHHMIRVMRMEAGNHVYLVFANDMSLEAEIREVKADAVMLKPVAIEQLQRELPI 77

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTI 132
           +  +   F   K ++L++++QK  E+G        A   ++    +      +R++    
Sbjct: 78  KVTIASGFP--KGDKLEWIVQKGTELGAAQFLAYPAKTSIVKWDPKKRQKKQERLQKIAQ 135

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETC--GSENSL-EKLHAIAHIP 188
            AAEQ      P +    T   LL   +  +C +V  +E+   G    L +    +A   
Sbjct: 136 EAAEQSHRQVCPTVELFATQSDLLAAMETADCVLVAYEESAKKGEHAQLVQTFRKVAPGQ 195

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           ++ +L GPEGG+  EE E   +   +    LGPRILR++TA
Sbjct: 196 HLMVLFGPEGGFLPEEIERFVAAGAIC-CGLGPRILRTETA 235


>gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 [Thermobispora bispora DSM 43833]
 gi|296091922|gb|ADG87874.1| protein of unknown function DUF558 [Thermobispora bispora DSM
           43833]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 34/240 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83
           SG + H+ A V R++ G+ + + +G        ++  GK +   +V  +  ++  +  + 
Sbjct: 21  SGPEGHHAATVRRLRPGERVDITDGAGRVAECVVAETGKDVLTARVLRRFHAEPPRPRLI 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137
            + +  K +R +  ++   E G+  I P      V+          + R R+    AA+Q
Sbjct: 81  VVQALAKGDRGELAVEMMTEAGVDVIVPWAASRCVVQWKGDRAAKALARWRSTAREAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--------- 188
                LP +             +       A+   G+E ++  LH  A  P         
Sbjct: 141 SRRFHLPEVT------------EQASTAQVAELISGAELAV-VLHEEAERPLSGITPPRG 187

Query: 189 ----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               ++ +++GPEGG   EE   L     V P  LGP +LR+ TA VAA A++ A CG W
Sbjct: 188 PSAGDIVVVVGPEGGITEEELARLSEAGAV-PALLGPTVLRTSTAGVAAAAVLFARCGRW 246


>gi|257870868|ref|ZP_05650521.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257805032|gb|EEV33854.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 251

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 15/236 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++     K      G+ +H++  V+RM   D + L        L+KI  + + + 
Sbjct: 1   MQRYFLNEDYEAKPVYVVEGEPFHHMVRVMRMVPDDCVYLVFQDQVAILAKIQQIDEQVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMG------AIRPVITRYTQ 118
             +E +   Q K+  +    +    K ++L+ ++QK  E+G        A   V+    +
Sbjct: 61  HLIEVEKEQQDKELPIHVTIASGYPKGDKLELIVQKGTELGAAKFIGFPAQSSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175
                  R++     AAEQ     +P I    + + L   L N+D+   + + +     E
Sbjct: 121 KLQKKQQRLQKIAQEAAEQAQRQRVPIIQLAASDKELWDSLSNYDYVI-VAYEESAKSGE 179

Query: 176 NS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           N+  ++ L   A    +  + GPEGG    E     S   V    LGPRILR++TA
Sbjct: 180 NAKLIDILSKAAPGSKILAIFGPEGGLTPAEITRAESQGAVI-CGLGPRILRTETA 234


>gi|260494170|ref|ZP_05814301.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198316|gb|EEW95832.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 235

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 22/219 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYIFS 87
           +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    + +   +V    S
Sbjct: 23  NHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLDIEVDAGIS 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         DR  T +  A +QC  +    I
Sbjct: 82  ILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQCQGVVPTVI 141

Query: 147 YPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEG 198
                ++ L LK++D       N + +F  +          L  +   P  +  +IG EG
Sbjct: 142 DEIKKIDKLNLKDYDLILVPYENEKKIFIKDI---------LRNLKVKPTKILYIIGAEG 192

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 193 GFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|46907698|ref|YP_014087.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093476|ref|ZP_00231239.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 4b H7858]
 gi|226224071|ref|YP_002758178.1| hypothetical protein Lm4b_01480 [Listeria monocytogenes Clip81459]
 gi|254824471|ref|ZP_05229472.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254932655|ref|ZP_05266014.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254991899|ref|ZP_05274089.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           FSL J2-064]
 gi|46880967|gb|AAT04264.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018152|gb|EAL08922.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876533|emb|CAS05242.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584214|gb|EFF96246.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593708|gb|EFG01469.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|328465513|gb|EGF36742.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           1816]
 gi|332311912|gb|EGJ25007.1| Protein YqeU [Listeria monocytogenes str. Scott A]
          Length = 255

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 15/218 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDV 82
           +G+ +H++  V+RMKE D + +        ++ I+ +     F   V++         ++
Sbjct: 20  TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L  +     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229
             GPEGG    EKE +        L+ LGPRILR++TA
Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235


>gi|296328429|ref|ZP_06870955.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154503|gb|EFG95295.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 235

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 28/239 (11%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68
           ++ DF L I      +GD  H + +  R  +GD I   +G + E+L +I  +  K I+ K
Sbjct: 9   VYDDFILVI-----DAGDINH-IKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLK 61

Query: 69  VEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDR 126
           +  +   + +   +V    S +K +++D  IQK  E+G+  I P+ + R         DR
Sbjct: 62  ILEKIEDKFSLDIEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDR 121

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLE 179
             T +  A +QC  +    I     +  L  K++D       N + +F  E         
Sbjct: 122 WDTISKEALKQCQGVVPTVIDEIKKINKLNFKDYDLILVPYENEKEIFIKEI-------- 173

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            L  +   P+ +  +IG EGG+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 174 -LRDLKIKPSKILYIIGAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|159903322|ref|YP_001550666.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888498|gb|ABX08712.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9211]
          Length = 251

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 18/224 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++ HYL  VLR+K GD I + NG    W   +                   ++++     
Sbjct: 29  NETHYLTRVLRLKPGDEIFIVNGYGSLWRGCLEKSDSLTLLSSLTNPEIFHQRANPLICL 88

Query: 87  SPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI---SAAEQCDILT 142
           + +   +  D +++   E+G+   +P+I+  + N    + R++ +      A EQ + L 
Sbjct: 89  AVVLPKKGFDEILRFCTEVGVDIFQPLISERSINQDIGILRLKRWQSIINEAVEQSERLW 148

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPN----VAILIGPE 197
           +P + PP   +    +W     I         EN   +L   +A + N    V I IGPE
Sbjct: 149 MPELRPPIRFQ----DWVTESSIGAVSIGTTRENRYCELETWLAQLSNDLSHVWIAIGPE 204

Query: 198 GGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           GG+ S E      H   +V     G  ILR  TAA+ +  L+ +
Sbjct: 205 GGWSSTELSLALKHGAQYV---QFGETILRVSTAAICSAQLMAS 245


>gi|312870591|ref|ZP_07730705.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3]
 gi|311093866|gb|EFQ52196.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3]
          Length = 251

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 28/234 (11%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQY 84
           D  H+LA VLR + G+ + L       +L++++ +  +   K+  Q    S+        
Sbjct: 20  DVAHHLATVLRAQPGEQVELVLADHRAYLAEVTTIQPATTVKLVKQLPGNSELPVEVTLL 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNT-HYNMDRVRTYTISAAEQC 138
              P    + ++++QK+ E+G   I        I+ +  N     + R++     AAEQ 
Sbjct: 80  CGLPKTKEKPEWIVQKATELGATTIAFFESERSISHWAANKRERKLARLQKIADGAAEQS 139

Query: 139 -----------DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
                      + LT      P  +  +   W+ + +     ET      L KL A   +
Sbjct: 140 HRNYQPRVAYYENLTAALAANPAPIRLV--AWEESAK---QGETSALAQVLTKLTAGEQV 194

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             VAI  GPEGG  + E E + +   V P+ LGPRILR++TA +  ++ V  +C
Sbjct: 195 --VAIF-GPEGGLTTGEVERMQAA-GVVPVGLGPRILRTETAPLYFLSAVSYVC 244


>gi|254852095|ref|ZP_05241443.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300765613|ref|ZP_07075592.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|258605395|gb|EEW18003.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300513714|gb|EFK40782.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
          Length = 255

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 15/218 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDV 82
           +G+ +H++  V+RMKE D + +        ++ I+ +     F   V++         ++
Sbjct: 20  TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNLVKWLKEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L  +     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229
             GPEGG    EKE +        L+ LGPRILR++TA
Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235


>gi|319892635|ref|YP_004149510.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162331|gb|ADV05874.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464327|gb|ADX76480.1| ribosomal RNA small subunit methyltransferase E, probable
           [Staphylococcus pseudintermedius ED99]
          Length = 250

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 28/232 (12%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-----RFKVEYQSRSQTKQ 79
           + +  H++  V+R   GD +++       +L+ ++Y  K I     R  +E   R + + 
Sbjct: 20  NNNDIHHIKSVMRQNVGDALII------NFLNAVTYRCKIIDIEAQRITIETVERIEVET 73

Query: 80  S---DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTY 130
               ++      IK ++ ++++QK+ E+G  +       R V+    Q     ++R +  
Sbjct: 74  ELPLNITICSGLIKGDKYEWLLQKATELGATSFIITQMDRSVVKLNQQKAAKKVERWQKI 133

Query: 131 TISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL----EKLHAIA 185
              AAEQ     +P +   + L E       ++C ++ A E    +N      ++L    
Sbjct: 134 VKEAAEQSYRQAVPQVKFVSNLHEIYDMIGQYDC-VLMAYEAAAKQNERALFKQQLRQFK 192

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           H  +V +L GPEGG+   E      +     + LGPRILR++TA + A++ +
Sbjct: 193 HGSHVLLLFGPEGGFSENEIALFEDVA--QSVGLGPRILRAETAPLYALSAI 242


>gi|308189971|ref|YP_003922902.1| hypothetical protein MFE_04220 [Mycoplasma fermentans JER]
 gi|319777253|ref|YP_004136904.1| chp protein [Mycoplasma fermentans M64]
 gi|307624713|gb|ADN69018.1| conserved hypothetical protein [Mycoplasma fermentans JER]
 gi|318038328|gb|ADV34527.1| CHP protein [Mycoplasma fermentans M64]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 13/156 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTI--SAAEQCDILT 142
           IK  R ++++QK+ E+G+  I P  ++YT        +N  + R   I  +AAEQ     
Sbjct: 76  IKIKRFEWILQKATELGVTTIIPFASKYTDAKILKYEFNSKQNRFNEIIKNAAEQSFRNI 135

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P++     LE ++K +          +    EN  +K + I +  +  +++GPEGG+  
Sbjct: 136 IPYLTKIMNLEEIIKTYPT------MQKYLAYENQDQKNNIITYPTSSILIVGPEGGFSP 189

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           EE E L     +   SLG  ILR++TA +  +A ++
Sbjct: 190 EEIE-LAKENNIKITSLGKTILRAETACLYMLANIK 224


>gi|238809922|dbj|BAH69712.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 13/156 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTI--SAAEQCDILT 142
           IK  R ++++QK+ E+G+  I P  ++YT        +N  + R   I  +AAEQ     
Sbjct: 82  IKIKRFEWILQKATELGVTTIIPFASKYTDAKILKYEFNSKQNRFNEIIKNAAEQSFRNI 141

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P++     LE ++K +          +    EN  +K + I +  +  +++GPEGG+  
Sbjct: 142 IPYLTKIMNLEEIIKTYPT------MQKYLAYENQDQKNNIITYPTSSILIVGPEGGFSP 195

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           EE E L     +   SLG  ILR++TA +  +A ++
Sbjct: 196 EEIE-LAKENNIKITSLGKTILRAETACLYMLANIK 230


>gi|51244548|ref|YP_064432.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54]
 gi|50875585|emb|CAG35425.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54]
          Length = 158

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQN------THYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D +IQK  E+G     P     +Q            +R +  ++ A +QC       + 
Sbjct: 1   MDLVIQKCTELGAEVFIPYDAARSQGKLDASQARKKQERWQRISLEACKQCMRPQPMTVA 60

Query: 148 PPTTLEFLLKNWD---HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            P +   L+          +++F +E   S  +L  L  +A    V I++GPEGG   EE
Sbjct: 61  SPASFVDLVTAESVEGPRLKLIFWEEE--SATNLYNLPGLADASGVDIILGPEGGISREE 118

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            E   +  + T +SLG RILR++TAA+ A+ LVQ + G+
Sbjct: 119 IEIARAHGWQT-VSLGQRILRAETAAIVALTLVQYLTGN 156


>gi|315658147|ref|ZP_07911019.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496476|gb|EFU84799.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 253

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
           IK ++ ++M+QK+ E+G          R V+          +DR +     AAEQ   LT
Sbjct: 89  IKADKYEWMLQKATELGANEFWAVDMARSVVKLNQTKAMKKIDRWQKIVKEAAEQSYRLT 148

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PN--VAILIGPEG 198
           +P +   + L+ +     H   I+ A E    +N       +     PN  V ++ GPEG
Sbjct: 149 IPSVKYMSNLKAVYDKISHYDYILIAYEEQAKQNERSHFRQLLQCFKPNDHVLMIFGPEG 208

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALVQAICG 242
           G    E E          + LGPRILR++TA   A++AM+    + G
Sbjct: 209 GLTESEIEMFKDNSHT--VGLGPRILRAETAPLYALSAMSYENELLG 253


>gi|325688555|gb|EGD30572.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 250

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KEGD + L      + L+++    + I   VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFDDGMKRLARVLDPSQQILEIVEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  AI      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGTSAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAILIGP 196
             +P +       +F     D +C I+  +E+     S   +  L  +A    V  + GP
Sbjct: 140 NLIPEVRLFDKKADFQAALADFDCIIIAYEESAKEGESAALVRALSGLAAGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           EGG   EE         V+   LGPRILR++TA + A+  V  +
Sbjct: 200 EGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242


>gi|297559680|ref|YP_003678654.1| hypothetical protein Ndas_0703 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844128|gb|ADH66148.1| protein of unknown function DUF558 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 245

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 15/229 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G +  + A V R++EG+ + L +G+       ++ VG   I   V  +      +  +  
Sbjct: 22  GAEGRHAAVVRRIREGETVDLSDGRGLRARCTVTAVGGDHIVCAVVERREEPAPRPRLTV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAEQC 138
           + +  K +R +  ++   E G  A+ P      +TR+  +     + + R     AA+Q 
Sbjct: 82  VQALPKGDRGELAVEMMTEAGADAVVPWAAERCVTRWKGDRAAKALAKWRATAREAAKQA 141

Query: 139 DILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
               LP +      T +  LL   D    +V  ++     + LE    +    +V +++G
Sbjct: 142 RRARLPEVADLADRTAVVELLAGADLG--VVLHEDGASRLSQLEP--PVGQDADVVVVVG 197

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           PEGG+   E E   +   V  L LGP +LR+ TA VAA++++QA  G W
Sbjct: 198 PEGGFSDAELEAFDAAGAVRAL-LGPSVLRTSTAGVAALSVLQARTGRW 245


>gi|289550652|ref|YP_003471556.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180184|gb|ADC87429.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           lugdunensis HKU09-01]
          Length = 250

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
           IK ++ ++M+QK+ E+G          R V+          +DR +     AAEQ   LT
Sbjct: 86  IKADKYEWMLQKATELGANEFWAVDMARSVVKLNQTKAMKKIDRWQKIVKEAAEQSYRLT 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PN--VAILIGPEG 198
           +P +   + L+ +     H   I+ A E    +N       +     PN  V ++ GPEG
Sbjct: 146 IPSVKYMSNLKSVYDKISHYDYILIAYEEQAKQNERSHFRQLLQCFKPNDRVLMIFGPEG 205

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALVQAICG 242
           G    E E          + LGPRILR++TA   A++AM+    + G
Sbjct: 206 GLTESEIEMFKDNSHT--VGLGPRILRAETAPLYALSAMSYENELLG 250


>gi|258424005|ref|ZP_05686887.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257845626|gb|EEV69658.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 250

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 16/221 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS---DVQYIF 86
           H++ +V+R      I+L       +L +I+ +  S +  V+ + +         DV    
Sbjct: 25  HHITNVMRYDVSSKIILTFNDQTVYLCEIADIT-SDKIAVDLKEKQNINTELPVDVTICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++++QK+ E+G  +       R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           L +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GP
Sbjct: 144 LVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 204 EGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 242


>gi|254827758|ref|ZP_05232445.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258600138|gb|EEW13463.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 255

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 15/218 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G+ +H++  V+RMKE D + +        ++ I+ +     F    +   +  +  ++ 
Sbjct: 20  TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNVLKWLEEDTELPIEI 79

Query: 85  IFSP--IKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
             +    K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L  +     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229
             GPEGG    EKE +        L+ LGPRILR++TA
Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235


>gi|325859585|ref|ZP_08172718.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS
           18C-A]
 gi|325482865|gb|EGC85865.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS
           18C-A]
          Length = 259

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 24/228 (10%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSD-VQYIFSPIK- 90
            VLR+KEGD + L +G+   + +++     K   + +    R +   S  +    +P K 
Sbjct: 28  RVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYTIRQTMRQKPAWSGRIHLAIAPTKD 87

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             R+++M +K+ E+G   I  +  R+++      DR+    +SA +Q      P + P +
Sbjct: 88  MGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADRIEKIVVSAVKQSRKGWKPLVNPMS 147

Query: 151 TLEFLLKNWDHN-----C----QIVFADETCGSENSLEK-------LHAIAHIP----NV 190
           +    ++N         C    +I   D      ++L+        L A    P    ++
Sbjct: 148 SFISFVENCPDKGRKFICHCYPEIPRTDFFTAITSALQPGIFLQNGLEAQKEHPSGAADI 207

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +LIGPEG +  EE     +  F + ++LG   LR++TA ++A+ + Q
Sbjct: 208 TVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRTETAGLSAVMMSQ 254


>gi|66361363|pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase
           (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
           Resolution
 gi|66361364|pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase
           (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
           Resolution
          Length = 234

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 108/212 (50%), Gaps = 29/212 (13%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-----IFSP 88
            V+R+KEGD I      DG   S  + + KS++ K       + ++ + +      +  P
Sbjct: 37  RVVRLKEGDVI---EATDGNGFS-YTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVP 92

Query: 89  I-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLPFI 146
           I +  R  ++I+K VE+G+  I     ++ ++ H  ++D+ +     AA+QC      ++
Sbjct: 93  IGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKAKIVVREAAKQCK----RYL 146

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSEEK 205
           +P  +    L+  + +  ++  D    S+N L+     A++  ++ +++GPEGG+  +E+
Sbjct: 147 FPKVSF---LEKLEFSGNVITLD-LDASQNLLD-----ANLEGSITVVVGPEGGFSEKER 197

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 198 ELLRSST--TIVSLGKKILRFETAAILTVGYI 227


>gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894760|gb|EFG74486.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 240

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 13/234 (5%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69
           +VD    I       GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +V
Sbjct: 7   YVDALPDIGALAAVDGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRARV 66

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYN 123
             +      +  V  + +  K+ R +  ++ + E G  A       R V +         
Sbjct: 67  LERWTVAPARPPVTVVQALPKSERSELAVELATEAGADAFLAWQSARCVASWQGPRVDKG 126

Query: 124 MDRVRTYTISAAEQCDILTLPF---IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           + R R    SAA Q     +P    +     L   ++       +V A     S+  L  
Sbjct: 127 LRRWRAVARSAARQSRRAHIPAVDGVLSTAELTGRVRAASAAGSVVLALHESASDR-LAD 185

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            H +A   +V +++GPEGG   EE   L     V  + LGP++LR+ TAA  A+
Sbjct: 186 SH-VAQADSVWLVVGPEGGIAPEEIAALTDAGAVA-VGLGPQVLRTSTAAAVAL 237


>gi|329296976|ref|ZP_08254312.1| hypothetical protein Pstas_11162 [Plautia stali symbiont]
          Length = 209

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYI 85
           D  +++  VLRM  G  I LF+G +  + ++I+   K  R KV+   S+   ++S +   
Sbjct: 23  DAANHVDRVLRMSAGQQIELFDGSNLTFSAQITQADKK-RVKVKVLASQPDDRKSPLHLH 81

Query: 86  FSPI--KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQ 137
              +  +  ++++ IQKS+E+G+  I P+ +         +     + + +   I+A EQ
Sbjct: 82  LGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDAERLAKKIQQRQKIAIAACEQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI-GP 196
           C    +P I    TLE      D   ++        S N+L +      +  V +LI  P
Sbjct: 142 CGRNRVPEIRAAMTLEAWCAEADDGLKLNLHPRASHSINTLPQ-----PVKRVRLLIDDP 196

Query: 197 EGGYHSEE 204
           EGG  +EE
Sbjct: 197 EGGLSAEE 204


>gi|289450255|ref|YP_003475043.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184802|gb|ADC91227.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 246

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 37/229 (16%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           H+L +V R   G+ +LL +     + S++   GK+   K      + T+     Y+   +
Sbjct: 25  HHLCNVQRALSGEKVLLVDKSGRRFFSEL---GKNGCVKRMGDCLADTEPPYRVYLIQGM 81

Query: 90  -KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS------------AAE 136
            K ++ ++++QK VE+G     P+      N   ++ RV+   +S            AA 
Sbjct: 82  PKGDKWEFILQKGVELGATDFYPL------NLQRSIARVKKEDLSKKVIRWNKIIAAAAL 135

Query: 137 QCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCGSENSLEKLHAIAH------I 187
           Q      P I+P T L+  +       +  ++V  +E    E SL    AI+       I
Sbjct: 136 QSGRTGCPIIHPVTDLKACVAELALLPNTLRVVAWEE----ERSLSLADAISDYRKHCGI 191

Query: 188 P-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           P ++ I+IGPEGG  ++E   L    F   +SLG RILR++TA + A+A
Sbjct: 192 PEHICIVIGPEGGLAADEIGVLKESGFQV-VSLGRRILRTETAGIMALA 239


>gi|15644132|ref|NP_229181.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga maritima MSB8]
 gi|4981941|gb|AAD36450.1|AE001791_12 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 222

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 112/218 (51%), Gaps = 30/218 (13%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY--- 84
           + H++  V+R+KEGD I      DG   S  + + KS++ K       + ++ + +    
Sbjct: 20  EAHHM-RVVRLKEGDVI---EATDGNGFS-YTCILKSLKKKTAAAKIVKVEEKEKEPTEK 74

Query: 85  --IFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDI 140
             +  PI +  R  ++I+K VE+G+  I     ++ ++ H  ++D+ +     AA+QC  
Sbjct: 75  LSVVVPIGRWERTRFLIEKCVELGVDEI--FFHKFERSQHEISLDKAKIVVREAAKQCK- 131

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGG 199
               +++P  +    L+  + +  ++  D    S+N L+     A++  ++ +++GPEGG
Sbjct: 132 ---RYLFPKVSF---LEKLEFSGNVITLD-LDASQNLLD-----ANLEGSITVVVGPEGG 179

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  +E+E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 180 FSEKERELLRS--STTIVSLGKKILRFETAAILTVGYI 215


>gi|254253271|ref|ZP_04946589.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158]
 gi|124895880|gb|EAY69760.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158]
          Length = 303

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 46/244 (18%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDALALFDGTGGQYRARL------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               +E   RS   Q D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 61  ----IEIDKRSALAQIDG---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            P      V+    +     +   R    ++ EQC    +P + P   L F    W    
Sbjct: 114 VPLSTARGVVKLSGERADKRVAHWRGVVRASCEQCGRNRVPHVAP--VLGF--NAWLDAL 169

Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPL 217
               AD       S       A +P+ A      +LIGPEGG   +E+    +  F T L
Sbjct: 170 PAAPADGELRLLLSPRASIPFASLPDAAPAAPVTLLIGPEGGLSPDEESAARARGF-TAL 228

Query: 218 SLGP 221
           S  P
Sbjct: 229 SARP 232


>gi|294785209|ref|ZP_06750497.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27]
 gi|294486923|gb|EFG34285.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27]
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQ 83
           GD  H + +V R  +GD I   +G + E+L +I  +  K I+ K+ E    S +   ++ 
Sbjct: 20  GDINH-IKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEIN 77

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              S +K +++D  IQK  E+G+  I P+ + R         DR    +  A +QC  + 
Sbjct: 78  AGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVV 137

Query: 143 LPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194
              I     ++ L LK++D       N + +F  +          L  +   P  +  +I
Sbjct: 138 PTAIDEVKKIDKLDLKDYDLILVPYENEKEIFIKDI---------LRNLKVKPTKILYII 188

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G EGG+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 189 GAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|323697889|ref|ZP_08109801.1| protein of unknown function DUF558 [Desulfovibrio sp. ND132]
 gi|323457821|gb|EGB13686.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans
           ND132]
          Length = 246

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 19/223 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ-TKQSDVQ 83
           SG +  ++  +LR +    + LF+G   + L  +  + K+       +        + + 
Sbjct: 25  SGPEARHMGTILRTERSQTVRLFDGHGRDGLFTVRDIAKNRAELEALELAEHPASATGLT 84

Query: 84  YIFSPIKTNRLDYMIQKSVEM-GMGAIRPVITRYTQNTHYNMDRVRTYT---ISAAEQCD 139
                 K+ R DY+++K+VE+ G G I     R +Q +  + D   T+T   + AA+QC 
Sbjct: 85  LAIGWGKSKRRDYLLEKTVELQGAGLIFWQAAR-SQGSLPD-DPKETWTEKFVQAAKQCG 142

Query: 140 ILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILI 194
            + LP +   +     L  L   +DH C + +      +E ++  L  +        ++I
Sbjct: 143 AVWLPELDTVSGGVDGLIPLAGRFDH-CYLAWE-----AEEAVTPLSPVMLSKGRTLVVI 196

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  +E + L    F  P++LGP ILR +TAAV  ++L 
Sbjct: 197 GPEGGFDPDEADRLVRAGF-GPVTLGPSILRWETAAVYCLSLA 238


>gi|262039461|ref|ZP_06012765.1| YqeU [Leptotrichia goodfellowii F0264]
 gi|261746528|gb|EEY34063.1| YqeU [Leptotrichia goodfellowii F0264]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 12/208 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ--TKQSDVQYIFS 87
           +++ +V R+ +GD + + +G + E+L++I+ + K        +  +   +   ++     
Sbjct: 25  NHVQNVFRLGKGDGLRVIDG-EFEYLTEITNIAKKEIKLKIIKKNTDNYSLNINIDAAIG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K  +++  I+K  E+G+  I P+ T R     +   ++       A +QC  +    I
Sbjct: 84  ILKNEKMNMTIKKLTEIGVSKIIPLQTERVVVKINEKKEKWDITVREALKQCKGVKFTEI 143

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGGYHSEE 204
            P T L+ +  N++   +IV+A E   S+N+ E L  I +    N+  ++GPEGG   EE
Sbjct: 144 VPVTKLQSI--NYELYDKIVYAYEN--SDNT-EPLVNIVNKNDKNILYIVGPEGGITEEE 198

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVA 232
              L      T +SLG RILR++TAA+ 
Sbjct: 199 VNFLKE-KGATEISLGKRILRAETAAIV 225


>gi|71894105|ref|YP_278213.1| hypothetical protein MS53_0081 [Mycoplasma synoviae 53]
 gi|71850893|gb|AAZ43502.1| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 12/156 (7%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYN-MDRVRTYTISAAEQCDILT 142
           IK  R +++I+K+ E+G+  I P  +++TQ     N   N  +R       AAEQ     
Sbjct: 76  IKFERFEWLIEKATELGVFEIVPFYSQFTQKHKLLNQFQNKKNRFEKIIKFAAEQSFRNI 135

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +  P + E LL N+  N ++V A E   ++N    L+ +    ++ + IG EGG+ S
Sbjct: 136 IPNLKDPISFEDLL-NFYVNQKLV-AHEISDNQNF--DLNLLTK-NDLLLTIGSEGGFSS 190

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +E        F   + LG  ILRS+TAA++ ++ V+
Sbjct: 191 DEIAKFKEANF-KVIHLGKTILRSETAAISLISKVK 225


>gi|284036271|ref|YP_003386201.1| hypothetical protein Slin_1352 [Spirosoma linguale DSM 74]
 gi|283815564|gb|ADB37402.1| protein of unknown function DUF558 [Spirosoma linguale DSM 74]
          Length = 239

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 38/239 (15%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTK 78
           TQ     D  H +   LR++ GD I + +G   ++ + I     +   F+++    +  +
Sbjct: 15  TQHLTEDDSRHAI-KTLRLRAGDAITVTDGHGNQYAAVIHETDLRQCAFRIKAVQTTPPR 73

Query: 79  QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
              V+   +P K  +R+++ ++K+VE+G+  I     ++++     ++R+    I+A +Q
Sbjct: 74  PFSVRICVAPTKNLDRIEWFVEKAVEVGIERISFFFGQHSERRVLKLERIEKIAIAAMKQ 133

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP------NVA 191
                LP +    +   +LK             T G E        IAH+P      N+A
Sbjct: 134 SLQSFLPKLDDAVSFGEMLK-------------TIGDEQRF-----IAHLPANQPLVNLA 175

Query: 192 ----------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                     +LIGPEG +   E +   +  F    +LGP  LR++TAA+ A  ++  I
Sbjct: 176 KQATEAGQYVVLIGPEGDFSDTEIQQALAAGFQVA-TLGPNRLRTETAALTACQILNFI 233


>gi|169497329|gb|ACA58045.1| hypothetical protein ACU_0003 [uncultured bacterium]
          Length = 180

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           Q HYL +VLR+K GD +L FNGKDGEW + ++  GK     ++ Q+R QT+  D
Sbjct: 128 QAHYLRNVLRLKPGDGVLAFNGKDGEWQAALA-DGKRTALVLQEQTRPQTEPQD 180


>gi|206900758|ref|YP_002251046.1| hypothetical protein DICTH_1217 [Dictyoglomus thermophilum H-6-12]
 gi|206739861|gb|ACI18919.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 247

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 28/227 (12%)

Query: 27  DQYHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQ 83
           D +H L +VLR++EG+ I + +N K  E     +YV +  + K+  +     + K+S+V+
Sbjct: 23  DIFH-LVNVLRVREGEKINVNYNLKIYE-----TYVERIEKDKIVCRIIGELEDKESNVE 76

Query: 84  -YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR---VRTY------TI 132
            Y+   + K    + +++K  E+G+    P+    TQ +  N+ +   V+ Y        
Sbjct: 77  VYLCQSLPKRESWEIILEKCTEIGVVGFIPL---QTQRSIVNLSKDGLVKKYERWNKIIR 133

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPN-V 190
            A +QC    LP +Y   +LE  L    + +  IV A E  G+E  L+ +     I + +
Sbjct: 134 EAVKQCGRNRLPLLYQVKSLEECLSLAREKDFDIVVAWE--GAELGLKDIMNRREIKDKI 191

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + IGPEG +  EE E +     +   ++GPRIL+ +TAA+ A AL+
Sbjct: 192 FLFIGPEGSFADEEIELMKKYGGIF-FNMGPRILKVETAAIVASALL 237


>gi|237742212|ref|ZP_04572693.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845485|ref|ZP_05550943.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|229429860|gb|EEO40072.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256719044|gb|EEU32599.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQ 83
           GD  H + +V R  +GD I   +G + E+L +I  +  K I+ K+ E    S +   ++ 
Sbjct: 20  GDINH-IKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEID 77

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              S +K +++D  IQK  E+G+  I P+ + R         DR    +  A +QC  + 
Sbjct: 78  AGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDIISKEALKQCQGVV 137

Query: 143 LPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194
              I     ++ L LK++D       N + +F  +          L  +   P  +  +I
Sbjct: 138 PTAIDEIKKIDKLDLKDYDLILVPYENEKEIFIKDI---------LRNLKVKPTKILYII 188

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G EGG+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 189 GAEGGFEKEEIDYLKE-NGAKIVSLGKRILRAETAAIVTGGVI 230


>gi|34763185|ref|ZP_00144151.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887154|gb|EAA24259.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQ 83
           GD  H + +V R  +GD I   +G + E+L +I  +  K I+ K+ E    S +   ++ 
Sbjct: 20  GDINH-IKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEID 77

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              S +K +++D  IQK  E+G+  I P+ + R         DR    +  A +QC  + 
Sbjct: 78  AGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVV 137

Query: 143 LPFIYPPTTLEFL-LKNWD------HNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194
              I     ++ L LK++D       N + +F  +          L  +   P  +  +I
Sbjct: 138 PTAIDEIKKIDKLDLKDYDLILVPYENEKEIFIKDI---------LRNLKVKPTKILYII 188

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G EGG+  EE + L        +SLG RILR++TAA+    ++
Sbjct: 189 GAEGGFEKEEIDYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|326335942|ref|ZP_08202119.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691906|gb|EGD33868.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 268

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 6/214 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++  VLR K GD + + +G+   +   I  +  K     ++  + +      +   
Sbjct: 46  EESTHIHRVLRRKIGDLLYITDGRGNLYEGVIQDINDKKCSIVIQSCTLTPPLPYQLHLA 105

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R ++ ++K+ E+G+  I P+I  +++     ++R     +SA +Q      P
Sbjct: 106 VAPTKMNERYEWFLEKATEIGVHEITPIICEHSERKTVKIERFEKIILSAMKQSLQCFRP 165

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLHAIAH--IPNVAILIGPEGGYH 201
            +  P  +   L N  H      A    G +  L +KL    H  I ++ I+IGPEG + 
Sbjct: 166 ILNKPINMLNWLDNNIHEKNRFIAHCQEGKKELLFDKLSTSYHNNIRDILIIIGPEGDFS 225

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +E +      F +P+ L    LR++TAA+ A +
Sbjct: 226 EKEIQKAIQKNF-SPVILSSNRLRTETAAIVACS 258


>gi|284055742|pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From
           Porphyromonas Gingivalis
 gi|284055743|pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From
           Porphyromonas Gingivalis
          Length = 257

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I+   +   D+  ++  VLR + GD + L +G+   + + I     KS    V  Q   Q
Sbjct: 13  IEQSDRLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 72

Query: 77  TKQSD-VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
               D +    +P K + R ++ ++K VE+G+  +  + + +++      +R+    ISA
Sbjct: 73  KPWRDRITIAIAPTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 132

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHA--IAHI-PN 189
            +Q    + P I     ++ ++ +        I + DE   +E +  + +     H+  +
Sbjct: 133 XKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           V ILIGPEG +   E E+     F  P+SLG   LR++TA + A
Sbjct: 193 VLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVA 235


>gi|269123850|ref|YP_003306427.1| hypothetical protein Smon_1088 [Streptobacillus moniliformis DSM
           12112]
 gi|268315176|gb|ACZ01550.1| protein of unknown function DUF558 [Streptobacillus moniliformis
           DSM 12112]
          Length = 233

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 34/221 (15%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYI 85
           + +++ +V R+KE D + +    D E+     Y G  K I  K    S S  K+ +    
Sbjct: 21  EINHIKNVFRLKENDEVRVI---DFEY----EYKGIVKEINKKNILISISDKKEDNYSLS 73

Query: 86  FSP------IKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQC 138
           F+       +K  ++  +IQK  E+G+  I P+ T R     +   ++       + +QC
Sbjct: 74  FNLDVAIGLLKNEKMKLLIQKLTELGIRNIIPLKTERVVVKINEKKEKWDLVVRESMKQC 133

Query: 139 DILTLPFIYPPTTLEFL-------LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
             +        T +E L        +N+D   +I++A E   S  +L+++       N+ 
Sbjct: 134 RAI------KKTNVEILNEIKRIKYENYD---KIIYAYENSESSLNLKEIIK-KEDSNIL 183

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           ++IGPEGG+  +E + L S+  +  +SLG RILR++TAA+ 
Sbjct: 184 LIIGPEGGFTKDEVKYLKSIGAI-EISLGKRILRAETAAIV 223


>gi|227529148|ref|ZP_03959197.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350992|gb|EEJ41283.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis
           ATCC 49540]
          Length = 251

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 18/245 (7%)

Query: 7   LKRLFVDFPLCIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F+D     KT GK     +  H+L  VLR   G    L       +L+++  +   
Sbjct: 1   MQRYFIDQS---KTAGKVILPEEVAHHLVTVLRAAVGTKFELVMADHQAYLAELISITPG 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITR 115
                  ++  +  +  V+ I +   P    + + ++QK  E+G   I      R +   
Sbjct: 58  NVIAKLIENLGKDSELPVKTILACGLPKTKEKPELIVQKGTELGADKIVFFEAERSISHW 117

Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +Q     + R++    +AAEQ      P I    +L+ LL N+    ++V  +E+    
Sbjct: 118 NSQKQPRKIARLQKIADAAAEQSHRNVKPQIEYCPSLKQLLANYPATIRLVAWEESAKEG 177

Query: 176 NSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S     A+A +    ++  + GPEGG  S E  T+     + P+  GPRILR++TA + 
Sbjct: 178 ESSRLFQALAKLQTGDSILAIFGPEGGLSSAEV-TIMEENGIIPVGFGPRILRTETAPLY 236

Query: 233 AMALV 237
            +A V
Sbjct: 237 FLATV 241


>gi|223938953|ref|ZP_03630839.1| protein of unknown function DUF558 [bacterium Ellin514]
 gi|223892380|gb|EEF58855.1| protein of unknown function DUF558 [bacterium Ellin514]
          Length = 251

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 15/223 (6%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY-IF 86
           + H+   VLR++EG+ +++ +G   E L +     K  + K++   R+   Q   Q  +F
Sbjct: 22  EAHHALQVLRLREGEKLVVLDGAGQEILCEAQKAEKD-QLKLKVLQRNFQPQLPYQITLF 80

Query: 87  SPIKTNRL-DYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
             I   ++ + +IQK+ E+G   I P+++         +     +++ +   I A +QC 
Sbjct: 81  QAIPKGKIIETIIQKATELGAFRIVPLLSDRVVTQLDDEGAASKVEKWKQTAIEAIKQCG 140

Query: 140 ILTLPFIYPPTT-LEFLLKNWDHNCQIV--FADETCGSENSLEKLH-AIAHIPN-VAILI 194
              LP +  P +  ++L +       ++    ++        +  H     +P  V+I I
Sbjct: 141 SPWLPQVDAPVSPKDYLARGEKFELPLIGSLQNDCRHPREYFKTFHNERKRLPKTVSIWI 200

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEG +   E   + S   V P++LG  +LRS+TAA+ +++++
Sbjct: 201 GPEGDFTPAEMNLIKSA-GVLPITLGKLVLRSETAAIYSLSVL 242


>gi|124023129|ref|YP_001017436.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963415|gb|ABM78171.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. MIT 9303]
          Length = 258

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYI 85
           D+ HYL  VLR++ G  + + +G    W + +   G  ++      S   Q  +   Q  
Sbjct: 29  DEVHYLRRVLRLRNGQAVAVVDGVGHFWEAHLQ-AGDFLKLDTSPSSPCLQQPRHRQQLA 87

Query: 86  FSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            + +   R  + +++ S E+G+  I+P+ + R T        R +     A EQ + L  
Sbjct: 88  LAVVIPKRGFEEVLRMSCELGVNRIQPLRSDRCTPQAEDRPLRWKVILREAVEQSEQLWQ 147

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--SLEKLHA--IAHIPNVAILIGPEGG 199
           P + P      L K+       VFA  T   +    L+ L       I  V + IGPEGG
Sbjct: 148 PELLPIAEASSLWKS--APVHAVFALATTRRQGLIDLQLLMEGLTPEINQVTVAIGPEGG 205

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +   E+    +  +V P++LG  ILR+ TAAVAA
Sbjct: 206 WSPIEECAAEAAGWV-PVALGDSILRTCTAAVAA 238


>gi|226356335|ref|YP_002786075.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus deserti
           VCD115]
 gi|226318325|gb|ACO46321.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 238

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 30/219 (13%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLS---------KISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +VLR+  G  +L+F+G+  +  +          I ++G+SI    E      T Q  +  
Sbjct: 34  YVLRLSPGAEVLVFDGQGAQAQATVVELDAARAILHLGESIGAAAE------TPQP-LTL 86

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCD-I 140
             + +K ++L  +++ + E+G+  ++ ++TR           + R+      A++Q    
Sbjct: 87  AVALLKGDKLADVVRAATELGVARVQLLVTRRADAREIGAQKLSRLNRIAEEASKQSRRA 146

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           +T P + P T  +F    W+   Q+  A    GS   L + H     P V +L GPEGG 
Sbjct: 147 VTPPVLNPVTLADF---QWE--GQLFVAQ--PGSSLRLTQ-HLDWSAP-VTVLTGPEGGL 197

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +EE   L +   ++ ++LGPRILR++TA VA +  + A
Sbjct: 198 TTEEVNQLTAKGALS-VTLGPRILRAETAPVALLGAIAA 235


>gi|322434914|ref|YP_004217126.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9]
 gi|321162641|gb|ADW68346.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9]
          Length = 255

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 45/236 (19%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQ 76
           T    +GDQ  +LA VLR + G    +F+     +L +      S   + F +  +  S 
Sbjct: 18  THAALTGDQAAHLARVLRAQPGQ---IFDVVAAGFLHRAEITAVSPERVDFLLHEELESD 74

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYT 131
           +    +    +  K + L++ I+K+ E+G   I P++ R T     Q     ++R R   
Sbjct: 75  SALP-LHLYLAIFKFDHLEWAIEKATELGAAKITPILARRTEKHLAQAAAKRVERWRRIA 133

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD------------------ETCG 173
             A++Q    + P I  PT L+  L+      +I+ ++                  ET  
Sbjct: 134 HEASQQSRRTSTPEISDPTPLKQALERETAPHRILLSETEQSLTLSTALGAPRLDSETWD 193

Query: 174 S--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE--TLHSLPFVTPLSLGPRILR 225
               NS E  HA+A        IGPEGG+  EE    T H    VT   LGPRILR
Sbjct: 194 GIPSNSQEITHALA--------IGPEGGWTPEEMSLFTHHQWTHVT---LGPRILR 238


>gi|121997724|ref|YP_001002511.1| hypothetical protein Hhal_0933 [Halorhodospira halophila SL1]
 gi|121589129|gb|ABM61709.1| 16S rRNA m(3)U-1498 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 240

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 29/204 (14%)

Query: 41  GDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMI 98
           GD + LFNG+ GE  S++  V +              ++  + VQ + +  K  R+D  +
Sbjct: 34  GDAVTLFNGEGGEHPSEVVAVERRRVTVRVGAHDPTERELPAAVQLLQAVGKGERMDTAV 93

Query: 99  QKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI---SAAEQCDILTLPFIYPPTT 151
           +K+ E+G+  I PV+T  T     +      R R +     +A EQC   T P +  P  
Sbjct: 94  EKATELGVSEIVPVLTERTVVRLNDPQRAAKRRRHWEAVARAACEQCGRNTPPRVAEPVP 153

Query: 152 LEFLLKNWDHNCQIVF-------ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           L    + W H+            AD          +L  +      ++LIGPEGG    E
Sbjct: 154 L---AQAWGHSRDYPLRLTLDPLADP---------RLSELTGAQATSLLIGPEGGLSPTE 201

Query: 205 KETLHSLPFVTPLSLGPRILRSDT 228
            E      F+    +GPR+LR++T
Sbjct: 202 LEAAGEHGFLR-GRVGPRVLRTET 224


>gi|254442333|ref|ZP_05055809.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae
           bacterium DG1235]
 gi|198256641|gb|EDY80949.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae
           bacterium DG1235]
          Length = 255

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 16/228 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D+ ++L    R + GD + +F+GK  E  +++S   K  R  ++ +S         Q 
Sbjct: 22  SPDESNHLIAANRARVGDPVRVFDGKGNEGNARVSVANKR-RAVLKIESICTLPPPPYQI 80

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAE 136
             +    K   ++ +I+K+ E+G+  I P+ITR  +             +    T+  A+
Sbjct: 81  ALAQALPKGKLIETIIRKATEIGIQQIFPLITRRVELKIEPKKEDSKNAKWTAATLEGAK 140

Query: 137 QCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKL---HAIAHIPNV 190
           Q     L  I P   L  LL   + +D         +T   +  LE+    H  +   +V
Sbjct: 141 QSGNPHLLKIEPICDLNSLLNQSEGFDLKLIASLTTDTTSLKKQLERYQSEHNGSSPKSV 200

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L+GPEG +  EE +   +  F+ P +LG  ++RS+TAA  A+++ Q
Sbjct: 201 LWLVGPEGDFTPEETQISINAGFL-PTTLGRYVMRSETAATHALSITQ 247


>gi|86141368|ref|ZP_01059914.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831927|gb|EAQ50382.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis
           MED217]
          Length = 237

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 6/210 (2%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           D+  ++  VLR + GD + + NG    + ++I S    +   K+   +  Q     +   
Sbjct: 21  DESKHIVKVLRKRTGDVLDITNGSGNFFKAEIISASPSNCTVKILEVTSEQPLPYHLHLA 80

Query: 86  FSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +P K N R +  ++K+ E+G+  I P+I  +++      +R      SA +Q     +P
Sbjct: 81  VAPTKLNDRFELFLEKATEIGISEISPIICDHSERKVIKEERYERIIQSAMKQSLKAHIP 140

Query: 145 FIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
            +    +  +FL      N     A   C   N       +    +V ILIGPEG +   
Sbjct: 141 KLNEAQSFSDFLETTKTFNGDRFIAH--CEETNRFSLKQKLQPKRDVLILIGPEGDFSPS 198

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E E      F +P+ LG   LR++TAA+ A
Sbjct: 199 EIEQAIQAGF-SPVMLGESRLRTETAAIVA 227


>gi|75764072|ref|ZP_00743673.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488442|gb|EAO52057.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 221

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 19/213 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEW-LSKIS--YVG 62
           ++R FV+     + + +  GD  H++A V+RM  GD I    NGK     + +I+  ++ 
Sbjct: 1   MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCVNGKTAVCSIDEITSEFIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P      ++   
Sbjct: 61  TAI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCG 173
            +     ++R+R     AAEQ     +P ++ P + + LL     +D  C + + +E   
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYD-VCLVAYEEEAKQ 176

Query: 174 SENS--LEKLHAIAHIPNVAILIGPEGGYHSEE 204
            E S   + L  +     + I+ GPEGG   EE
Sbjct: 177 GEKSNFAKALTTMKPGQKLLIVFGPEGGLAEEE 209


>gi|148377635|ref|YP_001256511.1| hypothetical protein MAG_3690 [Mycoplasma agalactiae PG2]
 gi|148291681|emb|CAL59067.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 227

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 17/158 (10%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYN--MDRVRTYTISAAEQCDILT 142
           IK  R ++++QK+ E+G+  I P+ +++   T     +N  +DR      +AAEQ     
Sbjct: 75  IKIKRFEWLLQKATELGVSRIIPMNSKFVDQTIIKYEFNKKIDRFNEIIKNAAEQSFRNA 134

Query: 143 LPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           +P +    T  E +L N D   +I  A E    E+ ++K+       N  +++GPEGG  
Sbjct: 135 VPKLEKIATFEEIILSNRDK--KIYVAYENKEVESQIDKIET-----NSILIVGPEGGLS 187

Query: 202 SEEKE-TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             E +  L +  F+  +SLG  ILR++TA +  ++ V+
Sbjct: 188 KGEIDFALQNNCFI--VSLGKTILRAETACIYMLSNVR 223


>gi|332638183|ref|ZP_08417046.1| hypothetical protein WcibK1_05770 [Weissella cibaria KACC 11862]
          Length = 248

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 16/223 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
            D  H+L  VLR K G     ++  ++   ++K+S +G  +      +      +  VQ 
Sbjct: 19  ADIAHHLMTVLRGKVGTMAEFVYPDRETMVVAKVSEIGDDVTRMTVVERVEANVELPVQA 78

Query: 84  -YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD------RVRTYTISAAE 136
             I    K ++ + ++QK+ E+G+  I  V T ++   H+ M       R+      AAE
Sbjct: 79  TLILGLAKGDKPELVVQKATELGVHHIIFVETDWS-VVHWGMKADKKIARLAKIAQGAAE 137

Query: 137 QCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAI 192
           Q   LT+P + Y P      L   +   +IV  +E+     +       A + +   VA 
Sbjct: 138 QSHRLTVPDVQYLPNLQALTLP--EAMIKIVAWEESAKQGEAAMLAQQFAQLRSGDEVAF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L+GPEGG    E E L          LGPRILR++TA + A++
Sbjct: 196 LVGPEGGLKEAELELLTEKFGFVAAGLGPRILRAETAPLYALS 238


>gi|242310102|ref|ZP_04809257.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523399|gb|EEQ63265.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 20/220 (9%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K  G+ YH++    R K+ +++ L N KD   ++  I+ + K     +  QS   T   +
Sbjct: 15  KLEGETYHHIFQSRRTKKSESLHLRNLKDSNLYIYNITNLSKK-DATLTLQSSQNTPLKN 73

Query: 82  V---QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137
                 I++ I    ++  +    E+ +  I      Y+Q N   N++R++    ++ EQ
Sbjct: 74  PPKGHLIWAMIDPKNIEKTLPFLNELNLQKITFFYAEYSQKNFKLNLERIQRILENSCEQ 133

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  +TL  I     L+ +L+ + +   + F  E    + SLE          + IL+G E
Sbjct: 134 CGRITLLEIEVLENLQEVLEKYPNAGVLDFGGEE--PKCSLE----------IPILVGTE 181

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GG+  +E+E L + P  T  S    ILRS+TAA+ A+A +
Sbjct: 182 GGFSKKEREALKNNPKYTATSCN--ILRSETAAIYAIARI 219


>gi|225375403|ref|ZP_03752624.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM
           16841]
 gi|225212739|gb|EEG95093.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM
           16841]
          Length = 162

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           ++++IQK+VE+G+  + PV  +        +     + R +    SAA+Q     +P + 
Sbjct: 1   MEWIIQKTVELGVYEVIPVAMKNCVVKLDDKKAKSKVTRWQAIAESAAKQSKRSLIPEVK 60

Query: 148 PPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P +  E +      + ++V  +   G   +   +  I    ++A+ IGPEGG+  EE E
Sbjct: 61  MPMSYKEAVAYAKKLDVKLVPYENEHGMAGTKAAMEQIKKGESIAVFIGPEGGFAPEEIE 120

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +     +  +SLG RILR++TA + A+A++
Sbjct: 121 MVRD--EMQLISLGRRILRTETAGIVALAIL 149


>gi|168701569|ref|ZP_02733846.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 237

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 23/213 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+L  V R  +GD +++FNG   ++ ++I   GK     +  +     ++     
Sbjct: 19  TGPEAHHLVAVRRFGDGDEVVVFNGDGNDYPAQILSAGKKSVVLLVREPVFVNRELPFPV 78

Query: 85  IFSPI--KTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNM-DRVRTYTISAAEQCDI 140
           + +    K +R D++++K  E+G+    P+IT R       ++ ++     I A++QC  
Sbjct: 79  VVASALPKGDRADFLVEKLTELGVNRFIPLITTRAVVLPKVSVVEKFGRAVIEASKQCGR 138

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-----ILIG 195
             L  +  P       + WD    +  AD        L  LH    +   +     + +G
Sbjct: 139 NCLMQVDAP-------QKWD--SFVARAD----LPQPLTILHTGPGLVGASGAGGTLAVG 185

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           PEGG+ +EE E   +  FV   SLG R+LR++T
Sbjct: 186 PEGGFTTEEVERALTHGFVA-RSLGSRVLRTET 217


>gi|255525324|ref|ZP_05392264.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7]
 gi|296188192|ref|ZP_06856584.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7]
 gi|255510996|gb|EET87296.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7]
 gi|296047318|gb|EFG86760.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7]
          Length = 251

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 10/228 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           +GD   ++  VLR++ GD + + N    E+L +I  + K        +      +S+V+ 
Sbjct: 19  NGDDVKHIYKVLRLQVGDKVNINNCGGEEFLGEIEEINKKQVIVKFIKKLPLNNESNVEV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQ 137
           Y+F  + K+ ++D ++QK+ E+G+  + P++T     +        +DR     + A +Q
Sbjct: 79  YLFQGLPKSAKMDLIVQKTTELGVKEVTPIVTERVVVKNELGEFKKIDRWCRIALEACKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH--IPNVAILIG 195
                +P I  P   + LL+       IV   E        + ++ I    I  + I+IG
Sbjct: 139 SKRSLVPKINTPIEFQSLLEVLKQMDLIVVPYENAEGYGIKKVVNNIDKDSIKKIGIIIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG+   E E L  L     ++LGPRILR++TA    M+L+    GD
Sbjct: 199 PEGGFEESEIEALEKLG-AHIVTLGPRILRTETAGFVCMSLLMYELGD 245


>gi|78357040|ref|YP_388489.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219445|gb|ABB38794.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 238

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 12/218 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           G + H++  VLRM+ GD   + +GK  E L  I  + K S++ ++          S    
Sbjct: 19  GSEAHHMIKVLRMRAGDTCRILDGKGREGLFIIRGMDKNSVQLELAETVMHPEPHSRAYI 78

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT--ISAAEQCDILT 142
                K+ R  ++ +K+VE+    I       +Q+   +M +   ++  ++ A+QC    
Sbjct: 79  ALGWGKSVRRSWIFEKAVELEAAGIWLWQAARSQSKMPDMTKESWHSQLVAGAKQCVNPW 138

Query: 143 LPFIYP----PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           +P +       T L  L + +D    I++  E   +  +L     +    +   +IGPEG
Sbjct: 139 IPELKSVAAGVTGLVELAQGFDRKF-ILWEGE---AREALLSGETLGTSGDTLFVIGPEG 194

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           G+  +E   L    F    SLG RILR +TAA+  + L
Sbjct: 195 GFADDEVSLLKESGFAAA-SLGNRILRWETAALLCLGL 231


>gi|239637611|ref|ZP_04678583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           warneri L37603]
 gi|239596829|gb|EEQ79354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           warneri L37603]
          Length = 250

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 16/219 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86
           H++ +V+R  EG  I+        +  +I ++G     ++E   +        Q+I    
Sbjct: 25  HHIKNVMRQCEGQQIVTTFNDQNVYTCEIIHIGDQ-EIEIELIEKQDIDTELPQHITICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++MIQK+ E+G          R ++   +      ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWMIQKATELGASEFIAVEMQRSIVKLNSTKASKKLERWQKIIKEAAEQSYR 143

Query: 141 LTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIP---NVAILIGP 196
           LT+P I   +  + +    + ++C +V  +E           H +        V ++ GP
Sbjct: 144 LTIPHISYLSNSKLICDIINQYDCVLVAYEEEAKHGEISHFKHMLKQFKPQDRVLLIFGP 203

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG   EE   L   P    + LGPRILR++TA +  + 
Sbjct: 204 EGGLSDEEVSMLK--PHSQLVGLGPRILRAETAPLYTLG 240


>gi|294155674|ref|YP_003560058.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145]
 gi|291599900|gb|ADE19396.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 14/157 (8%)

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-------NMDRVRTYTISAAEQCD 139
           S IK +R ++++QK++E+G   I P+I+ +T  + Y         +R  +   SA+EQ  
Sbjct: 73  SIIKIDRYEWLLQKAIELGATRIVPIISEHTDGSLYKNNKFINKYERFNSIIKSASEQSF 132

Query: 140 ILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              L  +  P +  E ++K    N +I+  ++     N    +++     +V I +GPEG
Sbjct: 133 RNKLIKLDNPMSFNEAIIKYRYINNKIIAHEKIDLENNDYRNINS-----DVIIFVGPEG 187

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GY  +E + L        +SLG RILR+++A++  ++
Sbjct: 188 GYSKKEID-LSVKNDYKVVSLGRRILRAESASIYLLS 223


>gi|54020067|ref|YP_115694.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae
           232]
 gi|6226420|sp|O50188|RSME_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|2654771|gb|AAC32528.1| unknown [Mycoplasma hyopneumoniae]
 gi|53987240|gb|AAV27441.1| putative 26.3 kda protein in cilium adhesion operon (orf5)
           [Mycoplasma hyopneumoniae 232]
          Length = 227

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           +KT   ++ IQK+VE+G+  I P     V  + + +    + R     + +A+Q     +
Sbjct: 77  LKTKSFEFAIQKAVEIGVNEIWPFYSKNVSQKLSGDLEKKLKRWEQICLHSAQQSFRNLI 136

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I  P   + LL+   +     F  +    E +   ++   +  N  I+IGPEGG+   
Sbjct: 137 PKINLPINYKDLLEQAKN-----FPVKLISFERAKNNINIPDNPQNTIIIIGPEGGFDDV 191

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231
           E +    L F + ++LG RILRS+TAA+
Sbjct: 192 EIQQAEKLGFQS-ITLGKRILRSETAAI 218


>gi|253681363|ref|ZP_04862160.1| conserved surface protein [Clostridium botulinum D str. 1873]
 gi|253561075|gb|EES90527.1| conserved surface protein [Clostridium botulinum D str. 1873]
          Length = 251

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 15/231 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
            G+   ++  VLR+KEG+ + + N    E+L  I Y+ K+ +  K+  +     +     
Sbjct: 19  EGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKVEVKLLKELEVNNEPPIEV 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-------HYNMDRVRTYTISAA 135
           Y+F  + K+ ++D + QK  E+G+  I P++T    ++          +DR       A 
Sbjct: 79  YLFQGLPKSTKMDLITQKCTELGVKDITPIVTSRVSSSINDIKRESKKLDRWNRIAFEAC 138

Query: 136 EQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIPNVAI 192
           +Q     +P +       EF  K  D +  +V  +  E  G +     L   + +  +AI
Sbjct: 139 KQNKRTLIPVVNDIIDFHEFTDKLKDMDLIVVPYENAENYGIKQMTRGLK--SEVKKIAI 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +IGPEGG+  EE  +L ++     ++LGPRILR++TA    +AL+    GD
Sbjct: 197 VIGPEGGFEEEEITSLKNMG-AHIVTLGPRILRTETAGFTCLALLMYELGD 246


>gi|78212815|ref|YP_381594.1| hypothetical protein Syncc9605_1285 [Synechococcus sp. CC9605]
 gi|78197274|gb|ABB35039.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 243

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 14/213 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++ HYL  VLR++ G+ + + +G  G          + +      Q+   + +  +    
Sbjct: 25  EEQHYLRRVLRLRCGEQVDVIDGC-GRLTRATLMEPQMLGLDSSVQNIEPSPKPQLGLAV 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           + ++   +D +++ + E+G+  I+P+   R      +  +R  T    A EQC+ L +P 
Sbjct: 84  ALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPERWATIIREAVEQCERLWIPQ 142

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGS-----ENSLEKLHAIAHIPNVAILIGPEGGY 200
           ++    L   +   D    + FA  T  S     +  L +    +    + ++IGPEGG+
Sbjct: 143 LHEVNGLSEWIGEQDG---LRFAGVTRESVAPSLDQCLRQQGNASQ--TIWVVIGPEGGW 197

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            S E+  L +   V P+ +G  ILRS TAAVA+
Sbjct: 198 TSAEQ-NLFAEAGVRPVRMGATILRSSTAAVAS 229


>gi|71893552|ref|YP_278998.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae
           J]
 gi|71851679|gb|AAZ44287.1| putative 26.3 kDa protein in cilium adhesin operon [Mycoplasma
           hyopneumoniae J]
          Length = 227

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           +KT   ++ IQK+VE+G+  I P     V  + + +    + R     + +A+Q     +
Sbjct: 77  LKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLEKKLKRWEQICLHSAQQSFRNLI 136

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I  P   + LL+   +     F  +    E +   ++   +  N  I+IGPEGG+   
Sbjct: 137 PKINLPINYKDLLEQAKN-----FPVKLISFERAKNNINIPDNPQNTIIIIGPEGGFDDV 191

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231
           E +    L F + ++LG RILRS+TAA+
Sbjct: 192 EIQQAEKLGFQS-ITLGKRILRSETAAI 218


>gi|145588414|ref|YP_001155011.1| hypothetical protein Pnuc_0226 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046820|gb|ABP33447.1| protein of unknown function DUF558 [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 253

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 87/165 (52%), Gaps = 21/165 (12%)

Query: 92  NRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTI-------SAAEQCD 139
           +++D++++K+VE G   I P+     I + T+++  +++R +   +       +A EQCD
Sbjct: 88  DKMDWIVEKAVETGAQIIAPLQCERSILKLTRSS--DLERAQKRLLHWEGIIQAACEQCD 145

Query: 140 ILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197
              L  + P  T   +L        +++ + +   S  S+     I + P N+ ++IGPE
Sbjct: 146 RTVLAKLEPIQTFSSYLQDGVKPKLKLLLSPDATQSLYSV----LIENEPQNIILMIGPE 201

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           GG+  +E++   +  +   +SLG R+LR++TA V A+  V ++ G
Sbjct: 202 GGHSPDEEKQAETAGYQL-VSLGERVLRTETAGVVAITAVHSVWG 245


>gi|15672086|ref|NP_266260.1| hypothetical protein L105256 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722949|gb|AAK04202.1|AE006248_10 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 250

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 19/224 (8%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGE-WLSK-ISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85
           H++  V+R K GD I L+F   DGE  LS+ IS   +S++  K+  +S     Q  V   
Sbjct: 27  HHIFTVMRAKSGDQIRLVFT--DGEIGLSEVISPSDQSVKLIKLLTESSELPVQITVAVG 84

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
           F   K ++LD++++KS E+G  AI        V     +      +++    + AAEQ  
Sbjct: 85  FP--KGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKLTKKQEKLEKVALGAAEQSR 142

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIG 195
              +P +        LL  +    Q++ A E      E ++ K  L  ++    V I+ G
Sbjct: 143 RQMIPELQLFEQFTDLLDKFSDFDQVLIAYEESAKMGEKTMFKQALTEMSLNQKVLIIFG 202

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           PEGG   +E      L     + LGPRILR++TA + A++ + A
Sbjct: 203 PEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSSISA 245


>gi|72080539|ref|YP_287597.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae
           7448]
 gi|71913663|gb|AAZ53574.1| 26.3 kDa protein in cilium adhesin operon [Mycoplasma hyopneumoniae
           7448]
          Length = 227

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           +KT   ++ IQK+VE+G+  I P     V  + + +    + R     + +A+Q     +
Sbjct: 77  LKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLEKKLKRWEQICLHSAQQSFRNLI 136

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I  P   + LL+   +     F  +    E +   ++   +  N  I+IGPEGG+   
Sbjct: 137 PKINLPINYKDLLEQAKN-----FPVKLISFERAKNNINIPDNPQNTIIIIGPEGGFDDV 191

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAV 231
           E +    L F + ++LG RILRS+TAA+
Sbjct: 192 EIQQAEKLGFQS-ITLGKRILRSETAAI 218


>gi|220904439|ref|YP_002479751.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868738|gb|ACL49073.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 252

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 20/229 (8%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74
           +C++ Q      +  +L+ VLR+  G+ + L +G+  +    +   GK +++ +   + R
Sbjct: 17  VCLEDQ------EARHLSQVLRLGPGNEVGLLDGRGRKGRFIVRKAGKKNVQLECISEER 70

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTI 132
               ++      +  K  R  + ++K+VE+G   I      ++Q   +    +      +
Sbjct: 71  LPLPEARAIIALAFSKAVRRGFFMEKAVELGAHGIWLWQGDHSQGKLSAAAEEACHGQLV 130

Query: 133 SAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           + A+QC    LP I         L  L    DH    +   E    +N      A+A  P
Sbjct: 131 AGAKQCGNPWLPEIRGLANGVDELATLAAGADHR---ILPWEA--QDNVPMLTPALAGQP 185

Query: 189 NVAI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +++ +IGPEGG+ S E + L    FV  +SLG R+LR +TAA   + L
Sbjct: 186 GLSVYVIGPEGGFSSRELDMLKRSGFVA-VSLGARVLRCETAATLCLGL 233


>gi|307266432|ref|ZP_07547968.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918540|gb|EFN48778.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 194

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 11/146 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K   I F +E +  S T+ +  
Sbjct: 19  EGEDFHHLVNVLRLKRGNEIVASDGLK-EYAARIEEIKKDKLILF-LERELESNTESALE 76

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
             +F  + K+++++ +IQK  E+G+    PV+TRYT       N +  + R R  +  A 
Sbjct: 77  ISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKSNINKKIARWRKISEEAC 136

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDH 161
           +Q     +P I  P + E  +   D 
Sbjct: 137 KQSGRTGVPEICMPISFEEAINQVDK 162


>gi|167752853|ref|ZP_02424980.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216]
 gi|167659922|gb|EDS04052.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216]
          Length = 253

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 5/219 (2%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS-DV 82
           S ++  +   VLRM  G+ + + +G+   +  +I     K  R +V   +    K    +
Sbjct: 17  SEEESKHCIRVLRMACGEELHITDGRGNLYRCEIVDDNPKRCRVRVRDTNSEFGKLPYRL 76

Query: 83  QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K N R ++ ++K+ E+G+  I P+ T +++      +R      +A +Q    
Sbjct: 77  TMAVAPTKNNDRFEWFLEKATEIGVAEIIPLATEHSERRTLKPERENKVITAAVKQSLKA 136

Query: 142 TLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             P ++  T L  ++K  +D    I   D    +       H +    +V +LIGPEG +
Sbjct: 137 YHPRLHEITPLRQVIKQPFDGQKFIAHCDAPRSALGKAFLPHILHKGGDVLVLIGPEGDF 196

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             EE +      F   ++LG + LR++TAAV A ALV A
Sbjct: 197 SPEEIDLAVRGGFRE-ITLGSQRLRTETAAVMATALVAA 234


>gi|328474981|gb|EGF45775.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           220]
          Length = 255

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDV 82
           +G+ +H++  V+RMKE D + +        ++ I+ +     F   V++         ++
Sbjct: 20  TGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQK  E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKRTELGAHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L  +     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLS-LGPRILRSDTA 229
             GPEGG    EKE +        L+ LGPRILR++TA
Sbjct: 200 VFGPEGGIS--EKELMQLQEVNAKLAGLGPRILRTETA 235


>gi|270296112|ref|ZP_06202312.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273516|gb|EFA19378.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 232

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 27/229 (11%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75
           I+T  +   ++  +   VLR++ GD ++L +GK   + ++IS     + +   +E   ++
Sbjct: 9   IQTHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128

Query: 135 AEQCDILTLP----------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            +Q     LP          FI  P   +  + +     + +  D     E++L      
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEKPLLKDMVHPGEDAL------ 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  +LIGPEG +  EE        F+ P+SLG   LR++TAA+ A
Sbjct: 183 -------VLIGPEGDFSEEEVRKATENDFI-PISLGKSRLRTETAALVA 223


>gi|326405687|gb|ADZ62758.1| ribosomal RNA small subunit methyltransferase E [Lactococcus lactis
           subsp. lactis CV56]
          Length = 250

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 19/224 (8%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGE-WLSK-ISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85
           H++  V+R K GD I L+F   DGE  LS+ IS   +S++  K+  +S     Q  V   
Sbjct: 27  HHIFTVMRAKSGDQIRLVFT--DGEIGLSEVISPSDQSVKLIKLLTESSELPVQITVAVG 84

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
           F   K ++LD++++KS E+G  AI        V     +      +++    + AAEQ  
Sbjct: 85  FP--KGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKLTKKQEKLEKVALGAAEQSR 142

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIG 195
              +P +        LL  +    Q++ A E      E ++ K  L  ++    V I+ G
Sbjct: 143 RQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTMFKQALTEMSLNQKVLIIFG 202

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           PEGG   +E      L     + LGPRILR++TA + A++ + A
Sbjct: 203 PEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSSISA 245


>gi|325297370|ref|YP_004257287.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           salanitronis DSM 18170]
 gi|324316923|gb|ADY34814.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           salanitronis DSM 18170]
          Length = 235

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 7/214 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFK-VEYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD ++L +G    + + I S  GK  + K VE   +    +  +  
Sbjct: 18  EEAAHCLRVLRLTMGDEVVLTDGNGFFYKAVIDSIAGKRCQVKIVESIFQEPLWKGHLHV 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q      
Sbjct: 78  AMAPTKNIDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKIVVSAVKQSLKARK 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +      +  ++  D   Q   A   C     L    A+    +  +LIGPEG +  E
Sbjct: 138 PKVNEMIDFDKFVRQ-DFKGQKFIAH--CYEGEKLLLKDALDVRMDAVVLIGPEGDFSRE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E     S  F  P+SLG   LR++TAA+ A+ L+
Sbjct: 195 EVALAESCGF-RPISLGKSRLRTETAALVAVHLM 227


>gi|315924412|ref|ZP_07920634.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622291|gb|EFV02250.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 245

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-------RTYTISAAEQCDILT 142
           K  ++D ++QK+ E+G+ ++ P ++ +        D+V       +     AA+Q     
Sbjct: 86  KGQKMDEIVQKNTELGISSVVPFVSAFCVAKLEEPDKVARKCGRWQRIAFEAAKQSKRGK 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P ++ P   + + +       ++ A E          L       N+A+++G EGG+  
Sbjct: 146 IPQVHEPVAFQRMCEIAADFDLVIIAYEHEMDRPLQTVLEGRTQYRNIAVIVGSEGGFSR 205

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EE E L +      +SLG RILR++TA +  +A +
Sbjct: 206 EEVERLEAAG-AKSVSLGRRILRTETAGMVLLAQI 239


>gi|329766974|ref|ZP_08258502.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341]
 gi|328837699|gb|EGF87324.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341]
          Length = 249

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 15/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64
           +++ F++  L +++  + S D  +++  ++R K  D + +    + +++  I  + V K 
Sbjct: 1   MQQYFLNEELNVESTYELSKDDSNHIVRIMRKKINDKVYVVFNNEIKYICNIIDNNVDKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +    E    S    + +     P+K ++++Y+IQK  E+G+  I      R +      
Sbjct: 61  LITPYEQVDGSNELPTKITVAIPPLKNDKIEYLIQKLTELGVSNIILFNSERNIAKIKKD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLL--KNWDHNCQIVFADETCGSE 175
                ++R       AAEQ     +P I Y  +  E +L  +N+D+   + +  E+   +
Sbjct: 121 KVDSKLNRWNKIIKEAAEQSKRNIIPDITYVDSLKELILFSENYDYKV-VAYEKESVNED 179

Query: 176 NSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           N   K  L++  +  NV  + G EGG   +E   L    F   + LG RILR++TA +  
Sbjct: 180 NVNFKRLLNSDLNNKNVIAVFGSEGGLSEQEIYNLLDDNF-EVIGLGKRILRAETAPLYF 238

Query: 234 MALV 237
           ++ V
Sbjct: 239 VSCV 242


>gi|326799017|ref|YP_004316836.1| ribosomal RNA small subunit methyltransferase E [Sphingobacterium
           sp. 21]
 gi|326549781|gb|ADZ78166.1| Ribosomal RNA small subunit methyltransferase E [Sphingobacterium
           sp. 21]
          Length = 236

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 7/210 (3%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85
           D+  + A VLR+  GD I+L +G+   +  +I+    K  + ++    R+  K++   +I
Sbjct: 21  DESKHCARVLRLGIGDPIVLIDGRGSLFRVEIADAHPKRTKVRILTIERNYGKRNHYLHI 80

Query: 86  -FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +RL++ ++K+ E+G+  I P+I  +++     ++R+     +A +Q      
Sbjct: 81  AVAPTKNLDRLEWFLEKATEIGIDEITPIICEHSERKELKIERLTKVVTAAVKQSLSAYH 140

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I  P       +        +     C     +     I    +  +LIGPEG +   
Sbjct: 141 PKINEPIDFRRFAEELPAKQHFI---AHCLEATKVTLTAEIKPHGSYCVLIGPEGDFSPS 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E E   S      +SLG   LR++TAA+ A
Sbjct: 198 EVEFAIS-KGCQAISLGNTRLRTETAALYA 226


>gi|258546222|ref|ZP_05706456.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC
           15826]
 gi|258518647|gb|EEV87506.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC
           15826]
          Length = 227

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 23/224 (10%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLF   PL +          + +++ VLR++ G +++LFNG   ++ +++    +    +
Sbjct: 16  RLFSSQPLRVGEVVALDASAHRHVSAVLRLRVGASLVLFNGDGFDYAAELVACDRRAS-Q 74

Query: 69  VEYQSRSQT-KQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           V   +R     +S +  +   + +K   +D ++QK+VE+G   I P+ T  ++    +  
Sbjct: 75  VRILAREAVGNESPLNLVLFAALLKGEAMDRVVQKAVELGAKRIVPLRTARSEALPADER 134

Query: 126 RVRTYT------ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENS 177
             R         +++A QC   TLP +        +L++     + +F+  D    S  +
Sbjct: 135 LSRKLAHWQGIVVASAMQCGRATLPQVEAVRDFADILED-APGLRWIFSPHDAPAASGQA 193

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
            E          V++LIGPEGG+  +E     +  ++ P SLGP
Sbjct: 194 AEA---------VSVLIGPEGGFAPDEVAAAVNAGWL-PQSLGP 227


>gi|238019341|ref|ZP_04599767.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748]
 gi|237864040|gb|EEP65330.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748]
          Length = 243

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 16/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLR--MKEGDNILLFNGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R  M++   +   + + G +       GK+
Sbjct: 1   MKKIFIHTPL--DETIELPTDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITEEIDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
               +EY   + +    +  + S +K  +L++++QK+ E+ +  +  V T  +    Y+ 
Sbjct: 59  QAKLIEYVESNVSSYRTI-LVQSLLKGEKLEWVLQKATELNIDTVYLVSTANSV-AKYDD 116

Query: 125 DRVRTYT-------ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--E 175
            +++T         + AA+QC    LP +     L  +L+      ++V  +   G   +
Sbjct: 117 KKLQTKATRWEKIMLEAAQQCGRNQLPTLVVGEKLSQVLEIESDALKLVAYENEDGHTIK 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + L ++++   I ++ I IGPEGGY   E   +        +SLG  ILR++TAA+ ++A
Sbjct: 177 DVLSQVNSDESITDILICIGPEGGYQENEINAIIE-SGGKSVSLGNTILRAETAAIGSLA 235

Query: 236 LVQ 238
           +++
Sbjct: 236 MIR 238


>gi|167618664|ref|ZP_02387295.1| hypothetical protein BthaB_20312 [Burkholderia thailandensis Bt4]
          Length = 227

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 51/240 (21%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 9   AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQL------ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R    + D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 62  ----VEIDKRGALARIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 114

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            P      V+    +     +   R    ++ EQC    +P + P       ++ +D   
Sbjct: 115 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPGVAP-------VRGFDAWL 167

Query: 164 QIVFADETCGSENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPFV 214
             +      G    L    A    A +P      +V +LIGPEGG   +E++   +  F 
Sbjct: 168 DALPDAPAAGELRLLLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFA 227


>gi|195941291|ref|ZP_03086673.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a]
          Length = 243

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDINNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   I+           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGII-----------LSKNESFDNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|51598615|ref|YP_072803.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi]
 gi|51573186|gb|AAU07211.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 243

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRLKKGDKLNILL---KDKESRTSEIVKIGSNFIKFATNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138
             S +K  ++D ++++ VE+G+  I  +   ++      N    +T   S     A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNQIVPKINFYNNFFYLPYSFCTTKYYVAHQSGMI-----------LSKNESFDNFSKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      +LR+DTA + ++A  +A+ GD+
Sbjct: 190 IIIGPEGCFSKPEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLAYFKALLGDY 241


>gi|265762508|ref|ZP_06091076.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255116|gb|EEZ26462.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 229

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---R 74
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS V    R  V  +    +
Sbjct: 9   IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS-VAAHKRCLVNIKETIYQ 67

Query: 75  SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
                  +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +S
Sbjct: 68  EPLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127

Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A +Q     LP +   T    F+ K++     I    E    E  L K   +    +  +
Sbjct: 128 AIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYE---GEKPLLK-DVLTKGEDALV 183

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           LIGPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 184 LIGPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVA 223


>gi|317153253|ref|YP_004121301.1| hypothetical protein Daes_1541 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943504|gb|ADU62555.1| protein of unknown function DUF558 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 246

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 98/241 (40%), Gaps = 35/241 (14%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73
           +P  +    + SG + H++  VLR      + LF+G     L K+    ++         
Sbjct: 14  WPSAVGETVRFSGAEAHHMLAVLRTAPDQIVRLFDGLGRVGLFKVQKTDRNTALLEAVSL 73

Query: 74  RSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEM-GMG-AIRPVITRYTQNTHYNMDRVRTY 130
            S   Q + V       K+ R DY+ +K VE+ G+G A         Q      +  R  
Sbjct: 74  ESHPAQDTGVTLAIGWGKSKRRDYLFEKLVELQGLGVAFWSAARSQGQMPDTPKESWRDK 133

Query: 131 TISAAEQCDILTLPFIYP-PTTLEFLL---KNWDHNCQIVF-----------ADETCGSE 175
            + AA+QC    LP I   P  L  LL   + +D  C + +           AD +CG+ 
Sbjct: 134 CVQAAKQCGNPLLPTITVLPAGLGGLLDFARGFDR-CYVAWESDEADRPLTPADLSCGTS 192

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                           I+IGPEGG   +E   L    FV P++LG  ILR +TAA   ++
Sbjct: 193 ---------------LIVIGPEGGLEHDEALALLEGGFV-PVTLGQSILRWETAATYCLS 236

Query: 236 L 236
           L
Sbjct: 237 L 237


>gi|60680491|ref|YP_210635.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis NCTC
           9343]
 gi|253563645|ref|ZP_04841102.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|60491925|emb|CAH06684.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251947421|gb|EES87703.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162028|emb|CBW21572.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---R 74
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS V    R  V  +    +
Sbjct: 9   IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS-VATHKRCLVNIKETIYQ 67

Query: 75  SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
                  +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +S
Sbjct: 68  EPLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127

Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A +Q     LP +   T    F+ K++     I    E    E  L K   +    +  +
Sbjct: 128 AIKQSLKARLPRLNEMTDFCTFIEKDFKGQKFIAHCYE---GEKPLLK-DVLTKGEDALV 183

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           LIGPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 184 LIGPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVA 223


>gi|224500510|ref|ZP_03668859.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes Finland
           1988]
          Length = 255

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 13/217 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+ +  H   ++ A E    E     L ++     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             GPEGG  SE++  L          LGPRILR++TA
Sbjct: 200 IFGPEGGI-SEKELLLLEEANAKLAGLGPRILRTETA 235


>gi|219685489|ref|ZP_03540307.1| conserved hypothetical protein [Borrelia garinii Far04]
 gi|219673045|gb|EED30066.1| conserved hypothetical protein [Borrelia garinii Far04]
          Length = 243

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRFKKGDKLNILL---KDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138
             S +K  ++D ++++ VE+G+  I  +   ++      N    +T   S     A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   I+           L K  +  +   + 
Sbjct: 141 GNQIVPKINFYNNFFYLPYSFCTTKYYVAHQSGIL-----------LSKNESFDNFSKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      +LR+DTA + ++A  +A+ GD+
Sbjct: 190 IIIGPEGCFSKPEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLAYFKALLGDY 241


>gi|153854414|ref|ZP_01995692.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814]
 gi|149752940|gb|EDM62871.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814]
          Length = 245

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 109/222 (49%), Gaps = 10/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQ 83
            G   +++ +VLRMK G+ + + +G+  ++L  + SY       K+  + + +++ +   
Sbjct: 19  EGGDVNHMKNVLRMKTGEELTVNDGEGSQYLCAVESYEADMAVLKILGKKQDESELASKI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           Y+F  + K ++++ ++QKSVE+G   + PV T+        +     ++R +   +SAA+
Sbjct: 79  YLFQGLPKQDKMELIVQKSVELGAYQVIPVATKRAVVKLDAKKAKKKVERWQQIAVSAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +    T    LK  +  +  ++  +   G E + + +  I    +V I I 
Sbjct: 139 QAGRGIIPEVGEVCTYAQALKQAEELDVVLIPYELEKGMEETKQIIAGIRPGQSVGIFI- 197

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              G   EE+  L       P++LG RILR++TA +  ++++
Sbjct: 198 GPEGGFEEEEVALAMKTGANPVTLGKRILRTETAGLTMLSVL 239


>gi|325568307|ref|ZP_08144674.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325158076|gb|EGC70229.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 251

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 25/241 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P   K     SG+ +H++  V+RM  G  + L        ++KI    +   
Sbjct: 1   MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGTKVGLVFEDHLAIIAKIKEADEETV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           +  E +   Q K+  +Q   +    K ++LD ++QK  E+G  A    I    Q +    
Sbjct: 61  YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAF---IGFPAQTSVVKW 117

Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADET 171
           D+ +              AAEQ      P I   T L+     W     ++  +V  +E+
Sbjct: 118 DQKKLQKKQQRLQKIAQEAAEQSQRQIAPAI---TLLDNAKAFWQSLSQYDAVLVAYEES 174

Query: 172 CGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                +   L  I  +P    V  + GPEGG    E E            LGPRILR++T
Sbjct: 175 AKQGEAAMLLQVITELPVGSKVLAIFGPEGGLAPSEIEGAQE-NNAKLCGLGPRILRTET 233

Query: 229 A 229
           A
Sbjct: 234 A 234


>gi|254302941|ref|ZP_04970299.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323133|gb|EDK88383.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 235

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 12/214 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQSDVQYIFS 87
           +++ +V R  +GD I   +G + E+L +I  +  K I  K+  ++  + +   +V    S
Sbjct: 23  NHIKNVFRKVKGDKIRAVDGTN-EYLCEIEKIEDKEIELKILEKTEDKFSLDIEVDAGIS 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         DR    +  A +QC  +    I
Sbjct: 82  ILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWEIISKEALKQCQGVVPTVI 141

Query: 147 YPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL--IGPEGGYHSE 203
                ++ L  K++D    ++        E  ++++     I    IL  IG EGG+  E
Sbjct: 142 DEIKKIDKLNFKDYD----LILVPYENEKEIFIKEIFRDLKIKPTKILYIIGAEGGFEKE 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E   L        +SLG RILR++TAA+    ++
Sbjct: 198 EINYLKE-NGAKIISLGKRILRAETAAIVTGGVI 230


>gi|225871292|ref|YP_002747239.1| hypothetical protein SEQ_2023 [Streptococcus equi subsp. equi 4047]
 gi|225700696|emb|CAW95299.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 248

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 19/225 (8%)

Query: 27  DQYHYLAHVLRMKEGDN-ILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQY 84
           D   ++  V+R+ + +  +L+F+  DG  + +++ V  S  ++VE  +   +  +  V+ 
Sbjct: 20  DTIKHMFQVMRLTDKEELVLVFD--DG--IKRLARVSDSSAYEVELIKELEENLEMPVEV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAE 136
             +    K ++LD + QK+ E+G  AI        V+   ++      +++    + AAE
Sbjct: 76  TIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKKLAKKQEKLAKIALGAAE 135

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVAI 192
           Q     +P I        LLK       C I + +     E S    +L  ++    V  
Sbjct: 136 QSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERSTLARELAGLSPGQKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG  S+E  +      +T + LGPRI+R++TA + A++ V
Sbjct: 196 IFGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALSAV 239


>gi|225848975|ref|YP_002729139.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644488|gb|ACN99538.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 222

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 107/223 (47%), Gaps = 14/223 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ- 83
           + D+YH+   V R+KEGD + + + +   +L +I  + K+ +  ++   +   K  D + 
Sbjct: 4   TDDEYHHAVKVRRLKEGDKVEVNDLQGNIYLGEILKIEKN-KALIKPIQKQDIKIPDYKI 62

Query: 84  --YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQ 137
             Y   P + +++D +I+   ++G+    PV+++ +     +    + +     +++ +Q
Sbjct: 63  TLYQCMPNQLSKIDDIIEPISQLGVDRFVPVLSKNSAVKQSDVEKKIQKWEKIALNSIKQ 122

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    I  P  L  +  N   + ++VF ++    E   + L       N +I+IG E
Sbjct: 123 CRRLYPVSIDKPVKLSNI--NSYDDLKVVFYEKE--YERKTKDLIG-KTFQNCSIVIGNE 177

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GG+  +E   L    F+ PLSLG  IL+ +TA +  +  ++ I
Sbjct: 178 GGFKEDEINLLVDKGFL-PLSLGNYILKMETAIIVGICQIKII 219


>gi|50365119|ref|YP_053544.1| hypothetical protein Mfl303 [Mesoplasma florum L1]
 gi|50363675|gb|AAT75660.1| unknown protein [Mesoplasma florum L1]
          Length = 238

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 15/209 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--S 87
           H++ +V+++K  D I+    +   + +KI  +       VE  ++ +T  S+V+ +    
Sbjct: 23  HHIKNVVKLK-NDEIIECVYEKEVYQTKIIDLTIENNVIVEIINKVETTISNVKKVLIAG 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
            ++  + DY++QKS E+G+  I PVI +        +     + R +    +AA+Q    
Sbjct: 82  VLREQKWDYLLQKSTELGVDEIIPVIFKRNVVKIDEKKIDQKLQRWQAICDTAAKQAKRT 141

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE-KLHAIAHIPNVAILIGPEGGY 200
           T+P +    T    LKN   +  +V  ++    E ++E K +      +++ +IG EGG 
Sbjct: 142 TIPVVNNLITNLKDLKNNLCDLNLVAWEK----EKNIELKTYLTQDFNSISFIIGCEGGI 197

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTA 229
              E + LH + F   +SLG  ILR++TA
Sbjct: 198 EVSEIKILHEIGF-KNVSLGTNILRAETA 225


>gi|312890379|ref|ZP_07749916.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM
           18603]
 gi|311297149|gb|EFQ74281.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM
           18603]
          Length = 234

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 7/212 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDV 82
           S ++  +   VLR++ GD++ L +G  G + ++I     K +  K+   Q+    +   +
Sbjct: 18  SEEESKHCIRVLRLQMGDHVQLIDGHGGLYEAEIVDAHPKKVALKLLSLQNEFGRRNHYL 77

Query: 83  QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K   RL++ ++K+ E+G+  I  +I + ++      +R+     SA +Q    
Sbjct: 78  HIAVAPTKNLERLEWFLEKATEIGIDEISLMICQRSERKEAKAERLNKIITSAIKQSLKA 137

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
             P +   T  + L+ N   + Q   A    G +  L  L  +       ILIGPEG + 
Sbjct: 138 YHPLLNEVTPFQKLI-NQPFDGQKFIAHCEPGDKAELSSLLKLQGC--YLILIGPEGDFS 194

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +E E      F  P++LG   LR++TAA+ A
Sbjct: 195 PKEIEDALQNGF-EPITLGNSRLRTETAALEA 225


>gi|260435986|ref|ZP_05789956.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109]
 gi|260413860|gb|EEX07156.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109]
          Length = 237

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 9/216 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++ HYL  VLR++ G+ + L +G  G   +      K +      Q      Q  +    
Sbjct: 19  EEQHYLRRVLRLRCGERVDLIDGC-GRLTTATLVEPKLLALDKPAQLIESLAQPHLGLAV 77

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           + ++   +D +++ + E+G+  I+P+   R      +  +R  T    A EQC+ L  P 
Sbjct: 78  ALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPERWATIIREAVEQCERLWTPQ 136

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEGGYHSE 203
           +     L   +++      +    ET  S  +L++   H    +    +++GPEGG+  E
Sbjct: 137 LLDLKDLSQWMEDERGQRLVGVTRET--STPALDQWLRHQADPVQLTWLMVGPEGGWTEE 194

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA-AMALVQ 238
           E +       + P+ +G  ILRS TAAVA A+ LV+
Sbjct: 195 ELKQFTE-AQIQPVQMGSTILRSSTAAVAGAVELVR 229


>gi|239617245|ref|YP_002940567.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1]
 gi|239506076|gb|ACR79563.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1]
          Length = 231

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 28/226 (12%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDG------EWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           + H++  V+R+K GD ++  +GK        + LSK   VG+ +  KV +          
Sbjct: 21  EAHHM-KVVRVKPGDELVATDGKGTLYEFVLQELSKNYSVGRMLSKKVFHHD-----DRT 74

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIR-----PVITRYTQNTHYNMDRVRTYTISAAE 136
           V    + +K  RL  +++KS E+G   I        + R  Q     +++ R     AA+
Sbjct: 75  VIVSVASMKWLRLRLILEKSTELGADRIEIFNCERTVARVDQR---KVEKFRRIVKEAAK 131

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q      PF+ P   +   L  ++ +   +F D    S ++L++    +++  V I++GP
Sbjct: 132 QS---VNPFL-PEVVIHEKLPRFNSDDLNIFLDFKKESISTLQEKIRGSNV--VRIIVGP 185

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           EGG+  EE   +        +SLG RILR++TA +A+++ V    G
Sbjct: 186 EGGFTKEEIREMQQDSI--SVSLGSRILRTETAVIASLSFVNFSIG 229


>gi|53712317|ref|YP_098309.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis
           YCH46]
 gi|52215182|dbj|BAD47775.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 229

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---R 74
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS V    R  V  +    +
Sbjct: 9   IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEIS-VATHKRCLVNIKETIYQ 67

Query: 75  SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
                  +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +S
Sbjct: 68  EPLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVS 127

Query: 134 AAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A +Q     LP +   T    F+ K++     I    E    E  L K   +    +  +
Sbjct: 128 AIKQSLKARLPRLNEMTDFYTFIEKDFKGQKFIAHCYE---GEKPLLK-DVLTKGEDALV 183

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           LIGPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 184 LIGPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVA 223


>gi|306832638|ref|ZP_07465777.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304425246|gb|EFM28373.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 247

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQYI 85
           D   ++ +V+R+ E D ++L      + L+K+    +  RF++  +  S  +  ++V  +
Sbjct: 20  DTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEH-RFEIIEELDSNVELPAEVTIV 78

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139
               K ++L+++ QK  E+GM  +        V+    +      D++   T+ AAEQ  
Sbjct: 79  AGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKLAKKADKLAKITLGAAEQSK 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195
              +P +      E  L   +   +I  A E    E        +L  +     +  + G
Sbjct: 139 RNVIPEVTLFEKKEAFLAELEQFDRIFIAYEESAKEGETAVLARELSQMKAGEKILFIFG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG   EE ET   L     + LGPRI+R++TA + A+A V
Sbjct: 199 PEGGISPEEIETFE-LKGGLKIGLGPRIMRAETAPLYALASV 239


>gi|302343725|ref|YP_003808254.1| hypothetical protein Deba_2298 [Desulfarculus baarsii DSM 2075]
 gi|301640338|gb|ADK85660.1| protein of unknown function DUF558 [Desulfarculus baarsii DSM 2075]
          Length = 251

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 12/239 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           +R  V+       + +    +  +   VLR+  GD + L +G      ++++ +GK    
Sbjct: 4   RRFLVEPAALDGPEARLDASEAAHARKVLRLNVGDEVWLVDGHGRRAKARLTSLGKGGAS 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHY 122
            ++E   R    +  +       K   +D++  +  E+ +  +RP +    +    +   
Sbjct: 64  CRIEAVERLTPLRPRLVICPGLAKGPAMDFLAARLTELAVDEVRPFLAARGEVRLRDEDQ 123

Query: 123 NMDRVRTYTISAAEQCDILTLP--FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            ++R R     A +QC    LP  F          L        I++  E      ++ +
Sbjct: 124 RLERWRRLAGQALKQCGAPLLPEFFAPLDLEALLALAPARAARLILYEGE---DGRAMAQ 180

Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + A A  P  V  LIGPEGG+ + E +   ++ F TP  LG  ILR++TA +A  A+ +
Sbjct: 181 VLAEAEGPAEVWALIGPEGGFTAAEVDRAAAVGF-TPCGLGGVILRAETACLAVAAVAR 238


>gi|162455373|ref|YP_001617740.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56']
 gi|161165955|emb|CAN97260.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56']
          Length = 252

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 23/230 (10%)

Query: 27  DQYHYLAHVLRMKEGDNILLFN---GKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           +   Y+  V R++EGD  ++F+   G + E  L  I   G   R      +  +  +  V
Sbjct: 24  EAASYVVRVHRLREGDRFVVFDPELGVEAEATLESIGRRGAEARIDAPRPAALRPGRR-V 82

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDI 140
            +I +  K +++D +++ + E+G   I P I+  +  +       R R   I AA QC  
Sbjct: 83  TWIQAVGKGDKMDAVVRDATELGATRIIPAISARSVARPAEEKSQRWRRIAIEAARQCGR 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHN----------CQIVFADETCGSENSLEKLHAIAHIPNV 190
              P +  P +L   L                C   +A+   G+     +L A++     
Sbjct: 143 GDAPRVEAPMSLAAALAEAGAAPSTEGGALGMCLDPYAETPLGA-----RLAALSPGMEA 197

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           A  +GPEGG+  EE     +L F   + LG   LR++T   AA+  + A+
Sbjct: 198 AFAVGPEGGFTPEELGMCAALGFER-VRLGALTLRTETVCAAALGALIAV 246


>gi|167580555|ref|ZP_02373429.1| hypothetical protein BthaT_20538 [Burkholderia thailandensis TXDOH]
          Length = 226

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 51/239 (21%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++      
Sbjct: 9   AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQL------ 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R    + D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 62  ----VEIDKRGALARIDA---FDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 114

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            P      V+    +     +   R    ++ EQC    +P + P       ++ +D   
Sbjct: 115 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPDVAP-------VRGFDAWL 167

Query: 164 QIVFADETCGSENSLEKLHA---IAHIP------NVAILIGPEGGYHSEEKETLHSLPF 213
             +      G    L    A    A +P      +V +LIGPEGG   +E++   +  F
Sbjct: 168 DALPDAPAAGELRLLLSPRASVPFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGF 226


>gi|317495255|ref|ZP_07953625.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914677|gb|EFV36153.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 249

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 29/243 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSI 65
           +++ FV+    I +    S D  +++  ++R K  D I ++FN +       I Y+   I
Sbjct: 1   MQQYFVNDKFDINSTYNLSKDDSNHIVRIMRKKINDKIYVVFNDE-------IKYICSII 53

Query: 66  RFKVE------YQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAI------RP 111
              +E      Y+    + +  ++   +  P+K ++ +Y+IQK  E+G+ +I      R 
Sbjct: 54  NDNIESVIVKPYEEVRGSNELPIKITIAIPPLKNDKTEYLIQKLTELGVSSIVLFNSERN 113

Query: 112 VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFA 168
           +           ++R +     AAEQ     +P I      E L+   K+ D+   + + 
Sbjct: 114 IAKIKKDKVESKLNRWQKIIKEAAEQSKRNLIPDITYIDCFEKLIEYSKSLDYK-MVAYE 172

Query: 169 DETCGSEN-SLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
            E+   +N +L+K L+      +V  + G EGG   +E  TL S  F   +SLG RILR+
Sbjct: 173 KESINEDNYNLKKLLNGPLENKSVIAVFGSEGGLSEKEINTLTSSEF-DVISLGKRILRA 231

Query: 227 DTA 229
           +TA
Sbjct: 232 ETA 234


>gi|296110360|ref|YP_003620741.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154]
 gi|295831891|gb|ADG39772.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154]
          Length = 247

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 25/175 (14%)

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134
           +V  I SP+K +R D+ +QK+ E+G+  I      R V     Q +   + R++    +A
Sbjct: 78  EVTMIVSPLKNDRSDWFVQKATELGVNRIIFTNMSRTVADWQKQQSKKGL-RLQKIAEAA 136

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDH------NCQIVFADETCGSENSLEKLHAIAHIP 188
           AEQ   L +P +      +FL   W+          IV  +E+         +  I  +P
Sbjct: 137 AEQSHRLMVPMV------DFL--PWEEVVRLPKKAGIVAWEESARQGEVATLVKVINQLP 188

Query: 189 NVA---ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             A   +L+GPEGG    E   L    +     LGPRILR++TA +  ++ +  +
Sbjct: 189 KEAHVHVLLGPEGGLTLSEINLLIENGY-QAAGLGPRILRAETAPLYVLSAISVL 242


>gi|328946995|ref|YP_004364332.1| ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
 gi|328447319|gb|AEB13035.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
          Length = 269

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 41/270 (15%)

Query: 7   LKRLFVDFPL----CIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKIS 59
           +++  V+ PL    CI  QGK    +YHYL  VLR+K GD I   LL        ++KI 
Sbjct: 1   MRQFIVETPLDSDGCIGIQGK----KYHYLNSVLRVKCGDMIYARLLDGSLQQMTVAKIV 56

Query: 60  YVGKSIRFKVEYQ-----SRSQT-----KQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGA 108
              K I  +   +     S SQ      K     Y+F    K  ++D +I+++ E G+  
Sbjct: 57  SCEKKIILQAAGKLNCNDSISQAAPVLEKPKAEIYLFQFEAKPPKMDLIIRQATECGVCG 116

Query: 109 IRPVITRYTQNTHYNMDRVRTYT---------ISAAEQCDILTLPFIYPPTTLEFLLKNW 159
           I PV   + Q  +    R ++ +           A +Q        ++   ++E     W
Sbjct: 117 IIPVEGEFCQKGNIESARKKSESGDERWQRIVTEARQQSGSPVETKVFYSVSVEEACGFW 176

Query: 160 -----DHNCQIVFADETCGSE---NSLEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHS 210
                +H   +V  + + G++   N+L+    I      +A+ +G EGG   +E   +  
Sbjct: 177 SSLQAEHKAALVLYERSDGTKSIYNALKNADVIKKENAKIAVAVGAEGGISVQEISIMKE 236

Query: 211 LPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             F+ P+     ILR +TA++  +A +Q +
Sbjct: 237 SGFI-PVHFDTNILRCETASLYGIAALQTV 265


>gi|320104496|ref|YP_004180087.1| hypothetical protein Isop_2973 [Isosphaera pallida ATCC 43644]
 gi|319751778|gb|ADV63538.1| protein of unknown function DUF558 [Isosphaera pallida ATCC 43644]
          Length = 270

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 21/214 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSR--SQTKQSD 81
           ++  +L+ VLR + GD + +F+      ++++  +G   +S    VE       +T +  
Sbjct: 36  EEGRHLSIVLRHRRGDRVEVFDSLGRVVIARVESLGSKRESTVLVVEQVGGILDRTPRRR 95

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQ 137
           V+   +P K  RL+++I+KS E+G+  +  +  R      +     +D++R   I  A+Q
Sbjct: 96  VRLAVAPPKGERLEWLIEKSAELGVEHVTLIHCRRGVASLEGGSPKLDKLRRKVIEVAKQ 155

Query: 138 C---DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           C    ++T+  +   T L      W   C     D+    E       A++    +A LI
Sbjct: 156 CRRNRLMTIDALDFRTYLAQETAAWRWLCH---PDDAQPPEP-----EALSDPQPLAALI 207

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           GPEGG+ S+E     +  +  P  LG  ILR +T
Sbjct: 208 GPEGGFESDELAEARAWGW-RPTRLGSPILRVET 240


>gi|257899573|ref|ZP_05679226.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257837485|gb|EEV62559.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 254

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83
           G+ YH++  V+RM+  D + L        +++I+ + +   +  E +     K+  S + 
Sbjct: 20  GETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAVYLKEIKKEENQKELPSSIT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                 K  +LD++IQKS E+G  A         V+    +       R+      AAEQ
Sbjct: 80  IASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAIL-- 193
                +P +    T   L +  D    ++ A E    +     +  I     P   IL  
Sbjct: 140 SHRQIVPSVELLETKRDLFERLDDYDMVLVAYEESAKQGEKSNVAKILSETKPGSRILAV 199

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            GPEGG   EE +       +    LGPRILR++T   A + L+ A    W
Sbjct: 200 FGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246


>gi|16803510|ref|NP_464995.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           EGD-e]
 gi|47095422|ref|ZP_00233032.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224501590|ref|ZP_03669897.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes FSL
           R2-561]
 gi|254829771|ref|ZP_05234426.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           10403S]
 gi|254898364|ref|ZP_05258288.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           J0161]
 gi|254912144|ref|ZP_05262156.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936472|ref|ZP_05268169.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|5689042|dbj|BAA82792.1| orf29 [Listeria monocytogenes]
 gi|16410899|emb|CAC99548.1| lmo1470 [Listeria monocytogenes EGD-e]
 gi|47016243|gb|EAL07166.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609065|gb|EEW21673.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293590116|gb|EFF98450.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 255

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 13/217 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDV 82
           +G+ +H++A V+RMKE D + +        ++ I+ + +   +   V++         ++
Sbjct: 20  TGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEEVLLNLVKWLEEDTELPIEI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K ++L+ +IQKS E+G        A R V+    +     ++R++     AAE
Sbjct: 80  TIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAE 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL- 193
           Q     +P ++   + + L+    H   ++ A E    E     L ++     P  ++L 
Sbjct: 140 QSHRTIIPEVHYAASFKELMFGHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLC 199

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             GPEGG  SE++  L          LGPRILR++TA
Sbjct: 200 IFGPEGGI-SEKELLLLEEANAKLAGLGPRILRTETA 235


>gi|325693858|gb|EGD35777.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK150]
          Length = 250

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 19/229 (8%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84
           D   ++  V+R+KEGD + L+F+  DG  + +++ V    +  +E  +  +   +  VQ 
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLARVLDPSQQSLEILEELADNTELPVQV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           I +    K ++L+++ QK  E+G  AI      ++      +      +++      AAE
Sbjct: 76  IIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135

Query: 137 QCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAI 192
           Q     +P I +     +FL    D +  IV  +E+     S   +  L  +A    V  
Sbjct: 136 QSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKEGESTVLVRALSGLAAGAKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           + GPEGG   +E         V+   LGPRILR++TA + A+  V  + 
Sbjct: 196 IFGPEGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|317504916|ref|ZP_07962867.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315663966|gb|EFV03682.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 240

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 17/215 (7%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQYIFSPIK 90
            VLR++ GDN++L +GK G +   I  +    +   E Q    + +T  S +    +P K
Sbjct: 28  RVLRLQSGDNMVLMDGK-GTFYHAIVTLASHKKCLYEIQETLPQEKTWSSQIHLAIAPTK 86

Query: 91  T-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
             +R++++ +K  E+G   +  +   +++      DR+    +SAA+Q     +P +   
Sbjct: 87  NIDRIEWLAEKVTEIGFDELSFLHCTFSERKMLRQDRIEKIVVSAAKQSRKAWMPKVNAL 146

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN------VAILIGPEGGYHSE 203
            + +  +       + +     C +E  +EK      I N      + +L+GPEG +  +
Sbjct: 147 ESFKEFITTPREGRKFI---AHCYTE--IEKKDFFDAITNDDLATPITVLVGPEGDFSID 201

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E        + + ++LG   LR++TA + A+ + Q
Sbjct: 202 EVRLAMEQGYES-ITLGKSRLRTETAGLMAVTMAQ 235


>gi|183220665|ref|YP_001838661.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910767|ref|YP_001962322.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775443|gb|ABZ93744.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779087|gb|ABZ97385.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 24/229 (10%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNIL-LFNGKDGEWLSKISYVGKSIRFKVEYQS 73
           P   K   + + ++ ++L   LR++  +NI+ + +G+ G +    +   K + F+ E   
Sbjct: 12  PFFKKESIQLTKEELNHL-RALRLQSENNIIQIRDGEGGLYNYLYTPNSKDLVFQNEEFV 70

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
             +T +  +       K NRLD+ +QK  E+G+  +  ++ R++    +N++R       
Sbjct: 71  PRKTNRKKIAIALP--KGNRLDFFLQKVTEIGLDEVIFLVFRHSIRKEFNLERAEKIVKE 128

Query: 134 AA---EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIP 188
           AA   +Q +IL L  I P        K+W   H   +V           ++ L     IP
Sbjct: 129 AAAQSKQTEILNLS-IEPA-------KDWMETHKESLVVFHPFGKDIFQIQSL--AGKIP 178

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               +IGPEGGYH++E+E +     +  L+L   +LR++T  + A + +
Sbjct: 179 ----VIGPEGGYHADEEEWMEKNQ-IPKLTLPGGVLRTETCGIVAASFL 222


>gi|257877049|ref|ZP_05656702.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811215|gb|EEV40035.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 251

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 25/241 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P   K     SG+ +H++  V+RM  G  + L        ++KI    +   
Sbjct: 1   MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           +  E +   Q K+  +Q   +    K ++LD ++QK  E+G  A    I    Q +    
Sbjct: 61  YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAF---IGFPAQTSVVKW 117

Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADET 171
           D+ +              AAEQ      P I   T L+     W     ++  +V  +E+
Sbjct: 118 DQKKLQKKQQRLQKIAQEAAEQSQRQIAPAI---TLLDNAKAFWQSLSQYDAVLVAYEES 174

Query: 172 CGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                +   L  I  +P    V  + GPEGG    E E            LGPRILR++T
Sbjct: 175 AKQGEAAMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQ-NNAKLCGLGPRILRTET 233

Query: 229 A 229
           A
Sbjct: 234 A 234


>gi|194467763|ref|ZP_03073749.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23]
 gi|194452616|gb|EDX41514.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23]
          Length = 246

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87
           H+L  V+R + G ++ L       +L+ +S    +   K+  +  + S+   S       
Sbjct: 22  HHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTATLKINQKLDADSELPVSVTLACGI 81

Query: 88  PIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
           P    + + ++QK+ E+G        A R +           ++R++    SAAEQ    
Sbjct: 82  PKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRN 141

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198
            +P +     L+ LL N+    +IV  +E+   G  ++L ++ +A+    ++  + GPEG
Sbjct: 142 KIPQVEYSANLDQLLANYPATERIVAWEESAKQGETSALAQQFNALKPGDSILAVFGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E   ++    V    LGPRILR++TA +  MA +
Sbjct: 202 GLSENEIAKMNEAGVVAA-GLGPRILRTETAPLYFMAAI 239


>gi|327468704|gb|EGF14183.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 250

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KEGD + L      + L+++   G+     +E  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLIFDDGMKRLARVLDPGQQSLEILEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK  E+G  AI      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196
             +P I +    ++FL    D +  IV  +E+     S   + A++ +     V  + GP
Sbjct: 140 NLIPEIRFFDKKVDFLAALTDFDRIIVAYEESAKEGESAALVRALSGLEAGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           EGG   +E +       ++   LGPRILR++TA + A+  V  + 
Sbjct: 200 EGGLSPDEIDAFGQAGAISA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|281423446|ref|ZP_06254359.1| RNA methyltransferase, RsmE family [Prevotella oris F0302]
 gi|281402782|gb|EFB33613.1| RNA methyltransferase, RsmE family [Prevotella oris F0302]
          Length = 240

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 100/211 (47%), Gaps = 11/211 (5%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           VLR++ GD++ L +G+   + +++S     K +    E   + +T +  +    +P K  
Sbjct: 29  VLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYTIKENLPQQKTWRGHIHLAIAPTKNI 88

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
           +R++++ +K+ E+G   +  +   +++      DR+    +SAA+Q      P++    T
Sbjct: 89  DRMEWLAEKATEIGFDELSFLHCAFSERKVLRADRIEKIVVSAAKQS---RKPWMPQVNT 145

Query: 152 LE----FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
           LE    F+ +  +    I    E    ++   ++        + +L+GPEG +  +E   
Sbjct: 146 LESFKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDNQKNEQITVLVGPEGDFSIDEVRL 205

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             +  + + +SLG   LR++TA + A+ + Q
Sbjct: 206 AMAQGYES-ISLGESRLRTETAGLMAVTMAQ 235


>gi|281490567|ref|YP_003352547.1| RNA methyltransferase family protein [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374385|gb|ADA63918.1| RNA methyltransferase family protein [Lactococcus lactis subsp.
           lactis KF147]
          Length = 250

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 19/224 (8%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGE-WLSK-ISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85
           H++  V+R K GD I L+F   DGE  LS+ IS   +S++  K+  +S     Q  V   
Sbjct: 27  HHIFTVMRAKIGDQIRLVFT--DGEIGLSEVISPSDQSVKLIKLLTESSELPVQITVAVG 84

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
           F   K ++LD++++KS E+G  AI        V     +      +++    + AAEQ  
Sbjct: 85  FP--KGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKLTKKQEKLEKVALGAAEQSR 142

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEK--LHAIAHIPNVAILIG 195
              +P +        LL  +    Q++ A E      E ++ K  L  ++    V I+ G
Sbjct: 143 RQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTMFKQALTEMSLNQKVLIIFG 202

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           PEGG   +E      L     + LGPRILR++TA + A++ + A
Sbjct: 203 PEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSSISA 245


>gi|81428349|ref|YP_395349.1| hypothetical protein LSA0735 [Lactobacillus sakei subsp. sakei 23K]
 gi|78609991|emb|CAI55039.1| Hypothetical protein LCA_0735 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 251

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           ++R F++  + +    + +G+  H++  V+RM+ GD I +   ++  +++++ S      
Sbjct: 1   MQRYFIEETVTVGQSLQLTGETAHHMLKVMRMQVGDQIEIVTPEELAFITQLQSADATQK 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKT---------NRLDYMIQKSVEMGMGAIRPV---- 112
           +  V  +S  +T   DV+    PI+T         ++ D+++QK  +  +GA R +    
Sbjct: 61  QATVTVESAVET---DVEL---PIETTIVCGLSKGDKTDWIVQKGTQ--LGAHRFIFCNS 112

Query: 113 ---ITRYTQNTHY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168
              + R+        + R++     AAEQ     +P I    +L  + +       + + 
Sbjct: 113 QFSVARWDAKKQVKKLARLQKIAQEAAEQAHRTHVPVIEWRASLTAIAEESADIKLVAYE 172

Query: 169 DETCGSENS--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +     E+   ++ L +     ++  + GPEGG   +E E L +  F+    LGPRILR+
Sbjct: 173 ESAKAGEHGQLVQSLQSAQPGQSLICVFGPEGGIAPKEIEALQAAGFLLA-GLGPRILRA 231

Query: 227 DTA 229
           +TA
Sbjct: 232 ETA 234


>gi|166365923|ref|YP_001658196.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843]
 gi|166088296|dbj|BAG03004.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843]
          Length = 157

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           I  N  D +++ + E+G+  I P++T       +   +DR R     A EQ +   +P I
Sbjct: 4   IPKNGFDDIVRAATELGVYRIIPLLTERGLVNPSPQKIDRWRKIAREAVEQSERQIIPII 63

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
             P     +L          +   T  + + L  L  +     + + IGPEGG+   E E
Sbjct: 64  EEPQPFLAILNRGVSPGTTCYIGVTRRTVDPL--LSQLQTSTEITMAIGPEGGWTEAEIE 121

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              +  F+ P+SLG RILR+ TA + A+A++ A
Sbjct: 122 QAIAADFL-PVSLGKRILRTITAPLVALAIINA 153


>gi|225016957|ref|ZP_03706149.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum
           DSM 5476]
 gi|224950271|gb|EEG31480.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum
           DSM 5476]
          Length = 212

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 17/211 (8%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF---SPIKTNRL 94
           MK G+ I+L +GK  +   +IS +  +    VE + R + K     +I    +  K ++ 
Sbjct: 1   MKAGEKIVLCDGKGVDCHGEISQITDN-EVIVEIRERVENKTEPSVHIRLYQAMPKGDKF 59

Query: 95  DYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
           + ++QKSVE+G+  I PV+T         ++    ++R       AA+Q     +P +  
Sbjct: 60  EQIVQKSVELGVFEIIPVLTARCISRPDAKSMRKKIERYNKIAYEAAKQSGRGRIPLVRE 119

Query: 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVAILIGPEGGYHSEEKE 206
               +  LK+             CG     +++ A+  A    ++I IG EGG+   E E
Sbjct: 120 LLPFDQALKDASGREGETLLFYECGG----QRIPALVDAGCSELSIFIGSEGGFEPSEVE 175

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                      SLG RILR +TA + A++++
Sbjct: 176 RAME-AGAQIASLGSRILRCETAPLCALSVL 205


>gi|298694859|gb|ADI98081.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 220

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134
           DV      IK ++ ++++QK+ E+G  +       R ++          ++R +     A
Sbjct: 48  DVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEGKVAKKIERWQKIIKEA 107

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNV 190
           AEQ   L +P I   + L+ +    D+   I+ A E    +  L    + L        V
Sbjct: 108 AEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKV 167

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++ GPEGG    E     +    T + LGPRILR++TA + A++ +
Sbjct: 168 LMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAI 212


>gi|296140458|ref|YP_003647701.1| hypothetical protein Tpau_2764 [Tsukamurella paurometabola DSM
           20162]
 gi|296028592|gb|ADG79362.1| protein of unknown function DUF558 [Tsukamurella paurometabola DSM
           20162]
          Length = 252

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 18/231 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           GD+  + A V R++ G+ ++L +G  G        VGKS +  +             V  
Sbjct: 22  GDEGRHAAAVRRIRVGEELVLSDGAGGFARCAAEAVGKSDVTVRCAQTWTVPAPSPRVIV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY---TQNTHYNMDRVRTYTISAAE 136
           + +  K++R +  ++ + E G   I P      + R+          + R R    SAA+
Sbjct: 82  VQALPKSDRAELAVELATEAGADEIVPWQAARCVARWDGAKSKAEKGVARWRAVARSAAK 141

Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           Q     +P ++   T   L  LL + D N  ++      GS   L ++   +    V I+
Sbjct: 142 QARRAYVPRVHDLVTGRELIPLLTSMDANVVVLHE----GSAVPLGEVD-FSVTTTVVIV 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG   EE + L ++    P  LGP +LR+ TAA  A+  +  +   W
Sbjct: 197 VGPEGGISPEELDALVAM-GAQPALLGPTVLRTSTAAAVALGAIGVLTDRW 246


>gi|148543950|ref|YP_001271320.1| hypothetical protein Lreu_0719 [Lactobacillus reuteri DSM 20016]
 gi|184153346|ref|YP_001841687.1| hypothetical protein LAR_0691 [Lactobacillus reuteri JCM 1112]
 gi|227364863|ref|ZP_03848910.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           MM2-3]
 gi|325682512|ref|ZP_08162029.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530984|gb|ABQ82983.1| protein of unknown function DUF558 [Lactobacillus reuteri DSM
           20016]
 gi|183224690|dbj|BAG25207.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070126|gb|EEI08502.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           MM2-3]
 gi|324978351|gb|EGC15301.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 246

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 12/219 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87
           H+L  V+R + G  + L       +L+ +S    +   K+  +  + S+   S       
Sbjct: 22  HHLLKVMRAEVGTTVELVLADHCVYLATLSATEPTATLKINQKLDADSELPVSVTLACGL 81

Query: 88  PIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
           P    + + ++QK+ E+G        A R +           ++R++    SAAEQ    
Sbjct: 82  PKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRN 141

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198
            +P +     L+ LL N+    +IV  +E+   G  ++L ++ +A+    ++  + GPEG
Sbjct: 142 KIPQVEYSANLDQLLANYPATERIVAWEESAKQGETSALAQQFNALKPGDSILAVFGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E   ++    V    LGPRILR++TA +  MA +
Sbjct: 202 GLSENEIAKMNEAGVVA-AGLGPRILRTETAPLYFMAAI 239


>gi|13357861|ref|NP_078135.1| hypothetical protein UU301 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761930|ref|YP_001752383.1| hypothetical protein UPA3_0309 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920402|ref|ZP_02931725.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|183508812|ref|ZP_02958267.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|186701985|ref|ZP_02971610.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|11356793|pir||B82909 conserved hypothetical UU301 [imported] - Ureaplasma urealyticum
 gi|6899276|gb|AAF30710.1|AE002127_8 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827507|gb|ACA32769.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902842|gb|EDT49131.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|182675768|gb|EDT87673.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|186700758|gb|EDU19040.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 16/214 (7%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKI-------SYVGKSIRFKVEYQSRSQTKQSDV 82
           H++ +V+RM+  D +++ N K   ++++I       + + K      E  ++    Q+  
Sbjct: 22  HHIKNVMRMRLHDKVIVIN-KTKAFVAEIINLEPLHATIIKPYTLNCELATKIDLFQA-- 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDIL 141
                 IK N  ++++QK+ E+G+ +I   I + T N +    +R+ T    A EQ    
Sbjct: 79  -----SIKPNNFEWIVQKACELGVNSIYQTIFKRTYNHSLIKTNRILTIIKEACEQARRN 133

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            L   Y   +   LLK       I+ A E                   +A++IGPEGG+ 
Sbjct: 134 HLVNYYAQFSFNELLKYLRDYDLILIAYENEKQNLLNNAFKEELTYQKIALVIGPEGGFE 193

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             E   L        +SL   ILRS+TA++  +A
Sbjct: 194 QMEINLLKQFDNAICISLTKTILRSETASLYLLA 227


>gi|225867798|ref|YP_002743746.1| hypothetical protein SZO_01840 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701074|emb|CAW97892.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 248

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 17/224 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQYI 85
           D   ++  V+R+ + + ++L   +DG  + +++ V  S  ++VE  +   +  +  V+  
Sbjct: 20  DTIKHMFQVMRLTDQEKLVLVF-EDG--IKRLARVSDSSAYEVELIKELEENVEMPVEVT 76

Query: 86  FSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQ 137
            +    K ++LD + QK+ E+G  AI        V+   ++      +++    + AAEQ
Sbjct: 77  IASGFPKGDKLDVITQKTTELGAAAIWGFPADWSVVKWDSKKLAKKQEKLAKIALGAAEQ 136

Query: 138 CDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVAIL 193
                +P I        LLK       C + + +     E S    +L  ++    V  +
Sbjct: 137 SKRNRVPEIKLFDQKGELLKQLKQFDKCFVAYEEAAKAGERSTLARELAGLSPGQKVLFI 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            GPEGG  S+E  +      +T + LGPRI+R++TA + A++ V
Sbjct: 197 FGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALSAV 239


>gi|219684646|ref|ZP_03539589.1| conserved hypothetical protein [Borrelia garinii PBr]
 gi|219672008|gb|EED29062.1| conserved hypothetical protein [Borrelia garinii PBr]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGE-WLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRFKKGDKLNILL---KDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138
             S +K  ++D ++++ VE+G+  I  +   ++      N    +T   S     A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNQIVPKINFYNNFFYLPYSFCTTKYYVAHQSGML-----------LSKNESFDNFSKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      +LR+DTA + ++A  +A+ GD+
Sbjct: 190 IIIGPEGCFSKPEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLAYFKALLGDY 241


>gi|218249900|ref|YP_002374877.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
 gi|218165088|gb|ACK75149.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E  +S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLINVRRLKKGDKLNILL---KDKELRVSEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|227552631|ref|ZP_03982680.1| protein of hypothetical function DUF558 [Enterococcus faecium
           TX1330]
 gi|257888142|ref|ZP_05667795.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896967|ref|ZP_05676620.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378677|ref|ZP_06624836.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1]
 gi|227178257|gb|EEI59229.1| protein of hypothetical function DUF558 [Enterococcus faecium
           TX1330]
 gi|257824196|gb|EEV51128.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833532|gb|EEV59953.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|292642717|gb|EFF60868.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1]
          Length = 254

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 18/232 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83
           G+ YH++  V+RM+  D + L        +++I+ + +   +  E +     K+  S + 
Sbjct: 20  GETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAVYLKEIKKEENQKELPSSIT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                 K  +LD++IQKS E+G  A         V+    +       R+      AAEQ
Sbjct: 80  IASGYPKGEKLDWVIQKSTELGAQAFIGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETC--GSENSLEKLHAIAHIPNVAIL- 193
                +P +    T   L +   D++  +V  +E+   G ++++ K+ +    P   IL 
Sbjct: 140 SHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEKSNVAKILSETK-PGSRILA 198

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             GPEGG   EE +       +    LGPRILR++T   A + L+ A    W
Sbjct: 199 VFGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246


>gi|257885342|ref|ZP_05664995.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821198|gb|EEV48328.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 254

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 18/232 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDV 82
           G+ YH++  V+RM+  D + L FN +    +++I+ + +   +  E +     K+  S +
Sbjct: 20  GENYHHIVRVMRMEPEDEVFLAFNDRIA-IVAEITEITEEAVYLKEIKKEENQKELPSSI 78

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAE 136
                  K  +LD+++QKS E+G  A         V+    +       R+      AAE
Sbjct: 79  TIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAE 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAI 192
           Q     +P +    T + L +  D    ++ A E    +    N+ + L        +  
Sbjct: 139 QSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEKSNAAKILSETKPDSRILA 198

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + GPEGG   +E +       +    LGPRILR++T   A + L+ A    W
Sbjct: 199 VFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246


>gi|117924870|ref|YP_865487.1| hypothetical protein Mmc1_1572 [Magnetococcus sp. MC-1]
 gi|117608626|gb|ABK44081.1| protein of unknown function DUF558 [Magnetococcus sp. MC-1]
          Length = 227

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 12/152 (7%)

Query: 92  NRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMDRVRTYTI--SAAEQCDILTLPFIY 147
            R  ++++K VE+G  AI PVIT   Y ++      +     I   AA QC    LP + 
Sbjct: 72  ERFLWILEKGVELGATAIYPVITEKSYHEDAPALAKQGGWVRILQRAARQCRRAVLPRVG 131

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
            P TLE  ++      Q     +   +    E L        V + +GPEGG+  E+   
Sbjct: 132 EPLTLEQAIEQGVGMAQWYL--DLSPTPLLGEPLQG-----AVQLFVGPEGGW-GEQDLA 183

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +     V P +LGPR+LR++TAA+ A++ + A
Sbjct: 184 IFRARGVAPRNLGPRLLRTETAALMALSWIAA 215


>gi|224533193|ref|ZP_03673793.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|224511920|gb|EEF82321.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
          Length = 243

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|303326762|ref|ZP_07357204.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3]
 gi|302862750|gb|EFL85682.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3]
          Length = 250

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 30/227 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +L  VLR+  GD + L +G+           G++ RF V   S+   +   ++  
Sbjct: 21  GQEAKHLGQVLRLVPGDEVSLLDGQ-----------GRTGRFAVRAVSKKSARLECLRES 69

Query: 86  FSP------------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDRVRTYT 131
           F+P             K  R  + ++K+VE+G  A+      ++Q        D  +   
Sbjct: 70  FTPRPASLAVMALAFSKAVRRGFFMEKAVELGAHAVWLWQGDHSQGKLPAGARDSCQGQM 129

Query: 132 ISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
           I+ A+Q     LP +   T  ++ L++      Q +   E    EN       +A    V
Sbjct: 130 IAGAKQSGNPWLPEVRALTGGVDELVELSRVADQRILPWEM--QENVPMLTPDLAGRTGV 187

Query: 191 AI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + +IGPEGG+ + E + L +  F   +SLG RILR +TAA   + +
Sbjct: 188 TVYIIGPEGGFSARELDALRAAGFAA-ISLGARILRCETAATLCLGI 233


>gi|293556305|ref|ZP_06674890.1| protein YqeU [Enterococcus faecium E1039]
 gi|291601564|gb|EFF31831.1| protein YqeU [Enterococcus faecium E1039]
          Length = 254

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83
           G+ YH++  V+RM+  D + L        +++I+ + +   +  E +     K+  S + 
Sbjct: 20  GENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAVYLKEIKKEENQKELPSSIT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                 K  +LD+++QKS E+G  A         V+    +       R+      AAEQ
Sbjct: 80  IASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAIL 193
                +P +    T + L +  D    ++ A E    +    N+ + L        +  +
Sbjct: 140 SHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEKSNAAKILSETKPDSRILAV 199

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            GPEGG   +E +       +    LGPRILR++T   A + L+ A    W
Sbjct: 200 FGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246


>gi|15594703|ref|NP_212492.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31]
 gi|8928457|sp|O51333|RSME2_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 2;
           AltName: Full=16S rRNA m3U1498 methyltransferase 2
 gi|2688252|gb|AAC66730.1| conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 243

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDINNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|154248861|ref|YP_001409686.1| 16S ribosomal RNA methyltransferase RsmE [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152797|gb|ABS60029.1| protein of unknown function DUF558 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 225

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 23/234 (9%)

Query: 16  LCIKTQGKASGDQYHYLAH--VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEY 71
            CI        D+ H + H  V+R+KEG+ +   +G  G++   I  +GK+  +   + Y
Sbjct: 6   FCIPKNDSVYFDE-HEVTHMKVMRLKEGEIVEATDGNGGKYKVIIKSIGKNEAYGNVLSY 64

Query: 72  QSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDRVR 128
           +    T    V  +F+P  +  RL + I+K+VE+G+  I  V      + HY+   D++ 
Sbjct: 65  EFVEVTNNKLV--LFAPSGRWERLRWTIEKAVELGVDEIY-VFNNERASRHYDDKQDKLE 121

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                A++QC     P I P   L+      +    + F         S           
Sbjct: 122 LIVREASKQCVRYHFPTIKPIEFLDIFSLAPESTYILDFKGRKIPKRIS----------K 171

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +V I+ GPEGG+   E + L S      + LG +ILR +TA + +        G
Sbjct: 172 SVGIIAGPEGGFSKSELKLLKSK--FKSICLGKKILRFETAIILSTGFFAMKLG 223


>gi|29376497|ref|NP_815651.1| hypothetical protein EF1975 [Enterococcus faecalis V583]
 gi|227519317|ref|ZP_03949366.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX0104]
 gi|256964753|ref|ZP_05568924.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257419655|ref|ZP_05596649.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|29343961|gb|AAO81721.1| conserved hypothetical protein TIGR00046 [Enterococcus faecalis
           V583]
 gi|227073246|gb|EEI11209.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX0104]
 gi|256955249|gb|EEU71881.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257161483|gb|EEU91443.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 250

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 17  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 76  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  +++V
Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSVV 242


>gi|238060562|ref|ZP_04605271.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149]
 gi|237882373|gb|EEP71201.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149]
          Length = 244

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 21/233 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           SG + H+ A V R++ G+ +LL +G+ G   + ++ VG+ ++  +V  +         + 
Sbjct: 20  SGPEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGRGTLDLRVTTRGYVDAHVPRLV 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY------TISAAEQ 137
            +    K +R +  +Q   E+G+  I P     +         VR           AA+Q
Sbjct: 80  VVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGERGVRAREKWVATAREAAKQ 139

Query: 138 CDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VA 191
                LP +      +T     +        V        E + E+L A A +P+   + 
Sbjct: 140 ARRAWLPVVAGSPDESTAAVAGRIAGAAAAFVL------HEEAQERL-ATAELPDAGEIV 192

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG    E  T        P  LGP +LR+ TA VAA++ +      W
Sbjct: 193 LVVGPEGGITDAELATFTEA-GARPTRLGPSVLRTSTAGVAALSALSPRLSRW 244


>gi|69247931|ref|ZP_00604547.1| Conserved hypothetical protein 46 [Enterococcus faecium DO]
 gi|257880295|ref|ZP_05659948.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257882150|ref|ZP_05661803.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257890954|ref|ZP_05670607.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894209|ref|ZP_05673862.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614757|ref|ZP_05712527.1| hypothetical protein EfaeD_03512 [Enterococcus faecium DO]
 gi|260562402|ref|ZP_05832916.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261209224|ref|ZP_05923616.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566140|ref|ZP_06446575.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293560713|ref|ZP_06677192.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|293566148|ref|ZP_06678551.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|294614194|ref|ZP_06694114.1| protein YqeU [Enterococcus faecium E1636]
 gi|294618772|ref|ZP_06698299.1| protein YqeU [Enterococcus faecium E1679]
 gi|294622231|ref|ZP_06701291.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|314938567|ref|ZP_07845851.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04]
 gi|314940912|ref|ZP_07847818.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C]
 gi|314948067|ref|ZP_07851469.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082]
 gi|314952049|ref|ZP_07855072.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A]
 gi|314991930|ref|ZP_07857385.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B]
 gi|314995188|ref|ZP_07860302.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01]
 gi|68194633|gb|EAN09120.1| Conserved hypothetical protein 46 [Enterococcus faecium DO]
 gi|257814523|gb|EEV43281.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257817808|gb|EEV45136.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257827314|gb|EEV53940.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830588|gb|EEV57195.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073326|gb|EEW61667.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260076770|gb|EEW64505.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162085|gb|EFD09950.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291590074|gb|EFF21866.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291592970|gb|EFF24559.1| protein YqeU [Enterococcus faecium E1636]
 gi|291594960|gb|EFF26310.1| protein YqeU [Enterococcus faecium E1679]
 gi|291598273|gb|EFF29366.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|291605304|gb|EFF34759.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|313590597|gb|EFR69442.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01]
 gi|313593514|gb|EFR72359.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B]
 gi|313595839|gb|EFR74684.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A]
 gi|313600270|gb|EFR79113.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C]
 gi|313642124|gb|EFS06704.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04]
 gi|313645483|gb|EFS10063.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082]
          Length = 254

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83
           G+ YH++  V+RM+  D + L        +++I+ + +   +  E +     K+  S + 
Sbjct: 20  GENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAVYLKEIKKEENQKELPSSIT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                 K  +LD+++QKS E+G  A         V+    +       R+      AAEQ
Sbjct: 80  IASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAIL 193
                +P +    T + L +  D    ++ A E    +    N+ + L        +  +
Sbjct: 140 SHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEKSNAAKILSETKPDSRILAV 199

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            GPEGG   +E +       +    LGPRILR++T   A + L+ A    W
Sbjct: 200 FGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246


>gi|298243472|ref|ZP_06967279.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM
           44963]
 gi|297556526|gb|EFH90390.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM
           44963]
          Length = 273

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 20/223 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           H +  VLR+   + ++L +    E L  +  S  G+ +   +E Q        +V     
Sbjct: 31  HQVRDVLRLALDERLVLLDNSGEETLCAVKKSARGEVVVEVLERQRGKSESPVEVMLCQG 90

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVI-----TRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            +K+ R +++++K  E+G+    P       T   +       R       A+EQC    
Sbjct: 91  MLKSARFEWILEKGTELGVSTFLPTTCQRSTTGLEEAGTSKQKRWLRIIQEASEQCGRAR 150

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIV--FADETCGSENSL--EKLHAIAHIPN----VAILI 194
           +P + P   L  +L +       +  + +E   +  S+  E +      P     V + I
Sbjct: 151 VPTLLPVRPLMHVLGDIPEGTLALMPWEEERTQTLRSVLREAMTNYEEAPTQRLRVMLFI 210

Query: 195 GPEGGYHSEE--KETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GPEGG+ +EE      H    VT   LG R+LR++TAA+A++A
Sbjct: 211 GPEGGFMAEEVMMARRHGAKIVT---LGERVLRAETAAIASIA 250


>gi|160889128|ref|ZP_02070131.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492]
 gi|317480687|ref|ZP_07939774.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
 gi|156861135|gb|EDO54566.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492]
 gi|316903194|gb|EFV25061.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 27/229 (11%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75
           I+   +   ++  +   VLR++ GD ++L +GK   + ++IS     + +   +E   ++
Sbjct: 9   IQAHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128

Query: 135 AEQCDILTLP----------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            +Q     LP          FI  P   +  + +     + +  D     E++L      
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYEGEKPLLKDMVHPGEDAL------ 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  +LIGPEG +  EE        F+ P+SLG   LR++TAA+ A
Sbjct: 183 -------VLIGPEGDFSEEEVRKATENGFI-PISLGKSRLRTETAALVA 223


>gi|111018255|ref|YP_701227.1| hypothetical protein RHA1_ro01245 [Rhodococcus jostii RHA1]
 gi|110817785|gb|ABG93069.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 253

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 23/234 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ--TKQSDVQ 83
           G +  + A V R+  G+ I+L +G+ G   ++++   K  R ++    R Q       V 
Sbjct: 22  GPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAAKD-RLELTVHKRRQVPAPSPSVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
            + +  K  R +  ++ + E G+ AI P      + R+        + R R+  ++AA+Q
Sbjct: 81  VVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVEKGVARWRSAALAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIP-----NV 190
                +P +        L +  +    +       G    L +     +A +P      +
Sbjct: 141 SRRAIVPEVS------ELHRTAEMLAVVREVVGRGGVVAVLHEAATQGLAELPLRSAAEI 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +++GPEGG   EE   L     V P+ LGP +LR+ TAA  A+  +  +   W
Sbjct: 195 VLVVGPEGGISEEEITALTDAGAV-PVLLGPHVLRTSTAAAVALGAIGVLTDRW 247


>gi|312149696|gb|ADQ29767.1| conserved hypothetical protein [Borrelia burgdorferi N40]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFAKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|257866973|ref|ZP_05646626.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873307|ref|ZP_05652960.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801029|gb|EEV29959.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807471|gb|EEV36293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 251

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 25/241 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P   K     SG+ +H++  V+RM  G  + L        ++KI    +   
Sbjct: 1   MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           +  E +   Q K+  +Q   +    K ++L+ ++QK  E+G  A    I    Q +    
Sbjct: 61  YLEEVEKEQQDKELPLQVTIASGYPKGDKLELIVQKGTELGAAAF---IGFPAQTSVVKW 117

Query: 125 DRVRTYTI---------SAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADET 171
           D+ +              AAEQ     +P I   T L+     W     ++  +V  +E+
Sbjct: 118 DQKKLQKKQQRLQKIAQEAAEQSQRQIVPAI---TLLDNAKAFWQSLSQYDAVLVAYEES 174

Query: 172 CGSENSLEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                +   L  I  +P    V  + GPEGG    E E            LGPRILR++T
Sbjct: 175 AKQGEAAMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQ-NNAKLCGLGPRILRTET 233

Query: 229 A 229
           A
Sbjct: 234 A 234


>gi|227555475|ref|ZP_03985522.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           HH22]
 gi|307272833|ref|ZP_07554080.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855]
 gi|227175397|gb|EEI56369.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           HH22]
 gi|306510447|gb|EFM79470.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855]
 gi|315574554|gb|EFU86745.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309B]
 gi|315581804|gb|EFU93995.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309A]
          Length = 245

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  +++V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSVV 237


>gi|332882920|ref|ZP_08450527.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679128|gb|EGJ52118.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 254

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 24/241 (9%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           +    +   D+  +   VLR++ GD I L +GK   + ++I+   GK   FKV E     
Sbjct: 12  VAVDAELPADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLFKVLEAVPHP 71

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           +     +    +P K  +R++++ +K+ E+G   +  +  RY++      +R+    +SA
Sbjct: 72  KEWSGHLHLALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTERIDKILVSA 131

Query: 135 AEQCDILTLPFI-----------YPPTTLEFLLKNWDHN--CQIVFADETCGSENS---- 177
            +Q      P +            P    +F+   +D      +  A E    +      
Sbjct: 132 MKQSHKARKPLLNEMEDFKRFVARPFAGQKFIAHCYDEADVAGVAKASEDKAMDGGKPFL 191

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L++L A     +  +L+GPEG +  +E     +  F + +SLG   LR++TAA+ A+ L+
Sbjct: 192 LDELDA---GQDALVLVGPEGDFSIDEVRLAQAHGFRS-VSLGRSRLRTETAALVAVHLM 247

Query: 238 Q 238
            
Sbjct: 248 H 248


>gi|269792239|ref|YP_003317143.1| hypothetical protein Taci_0625 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099874|gb|ACZ18861.1| protein of unknown function DUF558 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 239

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 26/171 (15%)

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAA 135
           S V  +   +K ++ D +++ S E+G+  I PVI   +     + H  + R R   + + 
Sbjct: 75  SRVVLLVGLLKADQWDQVLRFSCELGVDQIVPVICERSVPRPDDWHRKVQRYRRILLEST 134

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP------- 188
            QC  L  P I    +L  L             D +   E  L    A   +P       
Sbjct: 135 RQCGALRPPTIGDLVSLREL-------------DPSGLPELRLGAFLADGAVPIGEVVPC 181

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +VA+ +GPEG +   E E L  + F  P+SLGPR+LR+ TA  AA++LV+
Sbjct: 182 GDVALAVGPEGDWAPWEAEALIGMGF-RPVSLGPRVLRASTAVAAAVSLVR 231


>gi|329962100|ref|ZP_08300111.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057]
 gi|328530748|gb|EGF57606.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 11/212 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQY 84
           ++  +   VLR++ GD + L +G    + ++IS       F   VE   +     + +  
Sbjct: 18  EEAAHAVRVLRLQAGDEVTLTDGNGNFYRAEISTATNKRCFVNIVETLPQPALWDAHLHI 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q     L
Sbjct: 78  AMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSAIKQSLKARL 137

Query: 144 PFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYH 201
           P +   T   +F+ + ++    I    E    E  L  L  I H    A +LIGPEG + 
Sbjct: 138 PKLNEMTDFNKFITQPFEGQKFIAHCYE---GEKPL--LKDILHKGEDALVLIGPEGDFS 192

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            EE +T  +  ++ P+SLG   LR++TAA+ A
Sbjct: 193 EEEVKTALANGYI-PISLGRSRLRTETAALVA 223


>gi|257467709|ref|ZP_05631805.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062002|ref|ZP_07926487.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687678|gb|EFS24513.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 237

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 12/210 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQSDVQYIFS 87
           ++L +V R+K  + I   +G+   +   +S   K I  ++E  ++ R   K   +     
Sbjct: 25  NHLKNVFRIKLDEEIRAVDGEKEYFCKVVSIDKKEIILEIEQIFEDRYSHKVK-IDAALG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         D+       A +QC  +    I
Sbjct: 84  ILKNDKMDLAIQKLTEIGINKIIPLSVKRGVAKITEKKDKWDLIVREALKQCQAVKATEI 143

Query: 147 YPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEK-LHAIAHIPN-VAILIGPEGGYHSE 203
                LE +  + +D    +V     C  E +L+  L     +P  V  +IG EGG+  E
Sbjct: 144 DEVKKLEEIEFEKYD----LVIVPYECEEEYTLKNLLRNREKLPERVLYIIGSEGGFAPE 199

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E E L S      ++LG RILR++TA++  
Sbjct: 200 EIEFLKSKK-ADIVTLGRRILRAETASIVV 228


>gi|225549046|ref|ZP_03770021.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|226320424|ref|ZP_03795991.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|225370272|gb|EEG99710.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|226234177|gb|EEH32891.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|312147992|gb|ADQ30651.1| conserved hypothetical protein [Borrelia burgdorferi JD1]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|145595966|ref|YP_001160263.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora tropica
           CNB-440]
 gi|145305303|gb|ABP55885.1| protein of unknown function DUF558 [Salinispora tropica CNB-440]
          Length = 244

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 21/233 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           +G + H+ A V R++ G+ +LL +G  G  ++ ++ VGK ++  ++  +         + 
Sbjct: 20  NGPEGHHAATVQRLRAGEELLLADGCGGTAVAVVTAVGKGALELRITSRDHVDAPAHRLV 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRTY------TISAAE 136
            +    K  R +  +Q   E+G+  I P  T     T +  DR VR           AA+
Sbjct: 80  VVQGLAKGERGELAVQAMTEVGVDTIVP-WTAGRSVTQWRGDRGVRARGKWVATAREAAK 138

Query: 137 QCDILTLPFIY--PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VA 191
           Q     LP +   P      + +            E  G     E+L   A +P+   + 
Sbjct: 139 QARRAWLPVVAGAPAEDTSAVARRIAQAAAAFVLHEQAG-----ERL-VTAELPDRGEIV 192

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG    E          T + LG  +LR+ TA VAA++++ A  G W
Sbjct: 193 LVVGPEGGVAPGELAAFAEAGART-VRLGSSVLRTSTAGVAALSVLAARLGRW 244


>gi|111115181|ref|YP_709799.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo]
 gi|110890455|gb|ABH01623.1| conserved hypothetical protein [Borrelia afzelii PKo]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 32/232 (13%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YHYL +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHYLINVRRLKKGDKLNILL---KDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I  +   ++       NT     R       A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHQSGML-----------LSKNESFDNFSKIG 189

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           I+IGPEG + + E        F T +     +LR+DTA + ++A  + +  D
Sbjct: 190 IIIGPEGCFSNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240


>gi|145219108|ref|YP_001129817.1| hypothetical protein Cvib_0293 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205272|gb|ABP36315.1| protein of unknown function DUF558 [Chlorobium phaeovibrioides DSM
           265]
          Length = 247

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQ-- 79
           +  GD++H++A VLR K GD + + +G     +++I  VG + R+ + E  SRS   +  
Sbjct: 19  RIEGDEFHHIARVLRKKTGDRLRVTDGTG--RVAEIEVVGLAKRWLEGEVLSRSVVPRPS 76

Query: 80  SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
           + V    S +K   R D  ++K+ E+G+G I P+I+  T      +     + R     +
Sbjct: 77  TRVTVALSMLKAPARFDMFLEKATELGVGGIIPMISHRTVSQPSGEKLAGKLQRWNNIIL 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
           SAA Q     LP +  P     +L    ++ +++  +E+ 
Sbjct: 137 SAARQSKCFHLPELIGPLPFRSVLALEGYDNRLMPYEESS 176


>gi|156089341|ref|XP_001612077.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154799331|gb|EDO08509.1| conserved hypothetical protein [Babesia bovis]
          Length = 265

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 7/186 (3%)

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQ 118
           ++R   ++ S    ++  +  +    +   LD ++Q S  MG+G I  V +      Y +
Sbjct: 66  TVRLSDKFLSDVPPERPLIDLVVGIPRPRSLDKLLQYSASMGVGRILLVCSSRVELDYLK 125

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +    M  +    +   EQ     +P +    +L  L ++ +            G+E++L
Sbjct: 126 SHQLEMQNIEESLLLGMEQGVTTYMPEVQIHRSLGSLQRSLEKEPMATRLIAHPGTEDTL 185

Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             L   +H+   + + IGPEGG+   E +   SL F    ++G RILR++ AAVA ++ +
Sbjct: 186 GSLGITSHLSGPILVAIGPEGGWLDHEVDFYASLGF-RKFNIGERILRAEVAAVAIISQL 244

Query: 238 QAICGD 243
           Q +  D
Sbjct: 245 QLLLND 250


>gi|257457364|ref|ZP_05622535.1| RNA methyltransferase family protein [Treponema vincentii ATCC
           35580]
 gi|257445286|gb|EEV20358.1| RNA methyltransferase family protein [Treponema vincentii ATCC
           35580]
          Length = 257

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 20/235 (8%)

Query: 25  SGDQYHYLAHVLRMKEGD---NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           SG  + YL  V RM+EGD    +L  +G     +  I+ V K +R + +      ++ + 
Sbjct: 19  SGKDFVYLIKVRRMREGDVLHALLPQSGAAEMVIDLINTVKKELRLRRQTAPLGASRTAP 78

Query: 82  ------VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTI 132
                 +Q++   +K ++ D +I+++ E G+ A+ PVI  ++     N   ++R R    
Sbjct: 79  AAELILLQWV---LKGSKTDTIIRQATEAGICAVLPVIGEFSVAKKQNPAQLERFRRIIK 135

Query: 133 SAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
            A +Q        +  P  L  +   LK        VFA  +  SE S+     +A  P+
Sbjct: 136 EARQQSGSPVDTAVTEPAPLAAVLNTLKALIPGAGTVFAMCSENSEASIGFHQLLAAKPS 195

Query: 190 VAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             +L IG EGG    E   L    F T +     +LR++TAA+ A+A  Q I  +
Sbjct: 196 CIVLAIGAEGGISPAEAAVLRGAAFQT-VHFKTNVLRAETAALYAIAAAQTIINE 249


>gi|206896455|ref|YP_002247218.1| conserved surface protein, putative [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739072|gb|ACI18150.1| conserved surface protein, putative [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 8/211 (3%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
            Y+  VLR  +   I++F+G   E+++      KS+  + +  S    K   +    +  
Sbjct: 28  RYIEQVLRGAQDCKIVVFDGSGKEYITTYDIETKSLVIE-DVVSNCIQKSFSISLFQAVP 86

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI---LTLPFI 146
           K   +D +I    ++G+  + P+IT  T       +++  +   A E C +    +   I
Sbjct: 87  KGTAMDDIIALCSQLGVDQVYPMITARTTVKQVGSNKLMRWQRIALESCKVGGFCSTTEI 146

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
             P  L   L  ++    ++F  E     N       I    ++A+++GPEGG+   E E
Sbjct: 147 KQPLFLRDALALFNEADLVLFLYEN-AEANLRNYTTEIERANHIALVVGPEGGFDPSEAE 205

Query: 207 TLHSLPFVTPLSLGPRILRSDTAA-VAAMAL 236
            L      T  SLG  I RS  AA VA MA+
Sbjct: 206 ELSKRAITT--SLGAVIFRSRWAASVAVMAI 234


>gi|227514619|ref|ZP_03944668.1| protein of hypothetical function DUF558 [Lactobacillus fermentum
           ATCC 14931]
 gi|227087030|gb|EEI22342.1| protein of hypothetical function DUF558 [Lactobacillus fermentum
           ATCC 14931]
          Length = 249

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATL-LDPATAE 59

Query: 67  FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
            KVE Q      +  ++   +   P    + + ++QK+ E+G   I      R V     
Sbjct: 60  VKVE-QDLGGDSELPIKVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175
           Q     ++R++  T +AAEQ     +P +     L+ LL  +  + ++V  +E+   G  
Sbjct: 119 QRQGKKVERLQKITNAAAEQSHRDQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGER 178

Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +   +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  M
Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237

Query: 235 ALV 237
           A V
Sbjct: 238 AAV 240


>gi|189501155|ref|YP_001960625.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
           phaeobacteroides BS1]
 gi|189496596|gb|ACE05144.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides
           BS1]
          Length = 248

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 105/222 (47%), Gaps = 15/222 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           G+++ ++  VLR KE + I + +G      ++I+ +G++ +   V  + +     ++V  
Sbjct: 22  GEEFFHITKVLRKKEREVIHITDGMGLSVTAEITKIGRNGLTAAVTEKKKVLPPSAEVTV 81

Query: 85  IFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
             S +K++ R D+ ++K+ E+G+  I P+IT  T      +     ++R +   +SAA Q
Sbjct: 82  ALSLLKSSQRFDFFLEKATELGVAGIVPMITERTVSQPKAEKRARKLERWKKVVVSAALQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                 P I  P   + +LK   ++ +++  + +  + +       ++      + +   
Sbjct: 142 TKRYHFPEITAPLHFDAVLKREGYDSKLIACETSSIAPD-------VSFFGRKVLFLVGG 194

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            G  + E+  +        +S G  ILR++TA + A+A+ +A
Sbjct: 195 EGGFTGEELEMAVKKGFCEISFGHSILRAETAGIFAVAMARA 236


>gi|257084824|ref|ZP_05579185.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992854|gb|EEU80156.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 250

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 17/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSI 65
           ++R F+      K   K + + YH++  V+RM   D   L+F  K       +     S+
Sbjct: 1   MQRYFIKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNT 120
            FK E       K+  ++   +   P K ++L++++QK  E+G       P  T   +  
Sbjct: 61  YFK-EISKEEMDKELPIEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWD 118

Query: 121 HYNM----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           H        R++     AAEQ      P +      + ++  +D    ++ A E    + 
Sbjct: 119 HKKRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDTYDTVLVAYEESAKQG 178

Query: 177 SLEKLHAIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              +L  +         + +L GPEGG+  +E E            LGPRILR++TA + 
Sbjct: 179 EKSQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLY 237

Query: 233 AMALV 237
            ++ V
Sbjct: 238 LLSAV 242


>gi|257416411|ref|ZP_05593405.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158239|gb|EEU88199.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 250

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 17  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 76  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 135 EAAEQSHRQQTPTVSLVKKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242


>gi|288925123|ref|ZP_06419059.1| RNA methyltransferase, RsmE family [Prevotella buccae D17]
 gi|288338313|gb|EFC76663.1| RNA methyltransferase, RsmE family [Prevotella buccae D17]
          Length = 244

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 109/225 (48%), Gaps = 12/225 (5%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQ-SRSQTK 78
           Q +   ++  +   VLR+K GD + L +G    + ++++ V GK   ++++ +  +  T 
Sbjct: 15  QSELPEEEAGHALRVLRLKAGDEMFLMDGVGTFFRAEVTVVAGKHCMYEIKDRFPQHPTW 74

Query: 79  QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
           +  +    +P K   R+++M++K+ E+G   I  +  ++++      DRV    +SA +Q
Sbjct: 75  RGHIHLAIAPTKMMERMEWMVEKATEVGFDEISFLGCKFSERKVLRADRVEKIVVSAMKQ 134

Query: 138 CDILTLPFIYPPTTL-EFLL-----KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
                 P +    +  EF+      + +  +C   F  +   SE  +++        ++ 
Sbjct: 135 SRKAWKPVVNTMCSFGEFMAVEHPGRKYICHCYEEFPKKDFFSE--IQETIDYEDNEDIL 192

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L+GPEG +  +E +      + + +SLG   LR++TA ++A+ +
Sbjct: 193 VLVGPEGDFSVDEVQLALEKGYES-VSLGRSRLRTETAGLSAVMM 236


>gi|259503162|ref|ZP_05746064.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168877|gb|EEW53372.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 250

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 26/230 (11%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS-- 87
           H+L  VLR + G  + L       +L+++         K+  Q  +   +  VQ      
Sbjct: 23  HHLTTVLRAQRGTQVELVLADHQAYLAEVVATQPVTTVKL-LQKLAGNSELPVQVTLLCG 81

Query: 88  -PIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
            P    + ++++QK+ E+G   I      R V           + R++     AAEQ   
Sbjct: 82  LPKTKEKPEWIVQKATELGATTIAFFEAERSVSHWAANKRERKLARLQKIADGAAEQSHR 141

Query: 141 LTLPFI-YPPTTLEFLLKN--------WDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
              P + Y P   + L+ N        W+ + +     ET      L KL A   +  VA
Sbjct: 142 NYQPQVTYYPGLHQALVANPAPVRLVAWEESAK---QGETSALAQQLAKLTAGGRL--VA 196

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           I  GPEGG  + E E + +   VT + LGPRILR++TA +  +A V   C
Sbjct: 197 IF-GPEGGLTTGEVEQMQAA-GVTAVGLGPRILRTETAPLYFLAAVSYAC 244


>gi|293571365|ref|ZP_06682396.1| protein YqeU [Enterococcus faecium E980]
 gi|291608581|gb|EFF37872.1| protein YqeU [Enterococcus faecium E980]
          Length = 254

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 18/232 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQ 83
           G+ YH++  V+RM+  D + L        +++I+ + +   +  E +     K+  S + 
Sbjct: 20  GETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAVYLKEIKKEENQKELPSSIT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
                 K  +LD++IQKS E+G  A         V+    +       R+      AAEQ
Sbjct: 80  IASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAKKRMKRQQRLEKIAQEAAEQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETC--GSENSLEKLHAIAHIPNVAIL- 193
                +P +    T   L +   D++  +V  +E+   G ++++ K+ +    P   IL 
Sbjct: 140 SHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEKSNVAKILSETK-PGSRILA 198

Query: 194 -IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             GPEGG   EE         +    LGPRILR++T   A + L+ A    W
Sbjct: 199 VFGPEGGLSHEEINYFVEHKGIL-CGLGPRILRTET---APLYLLSAASYQW 246


>gi|256961537|ref|ZP_05565708.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256952033|gb|EEU68665.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 250

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D+  L+F  K       +     S+ FK E       K+  
Sbjct: 17  KVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 76  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242


>gi|225552469|ref|ZP_03773409.1| conserved hypothetical protein [Borrelia sp. SV1]
 gi|225371467|gb|EEH00897.1| conserved hypothetical protein [Borrelia sp. SV1]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRIKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIIPKINFYNNFFYLPYSFCTTKYYVAHPSGML-----------LSKNESFGNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSEPEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|293384704|ref|ZP_06630559.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712]
 gi|293387404|ref|ZP_06631959.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613]
 gi|312908310|ref|ZP_07767274.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           512]
 gi|312910616|ref|ZP_07769458.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           516]
 gi|291078011|gb|EFE15375.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712]
 gi|291083195|gb|EFE20158.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613]
 gi|310625724|gb|EFQ09007.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           512]
 gi|311289164|gb|EFQ67720.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           516]
          Length = 245

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D+  L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|29349736|ref|NP_813239.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569899|ref|ZP_04847308.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384009|ref|ZP_06993570.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14]
 gi|29341646|gb|AAO79433.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840280|gb|EES68362.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263613|gb|EFI06476.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 11/212 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS---RSQTKQSDVQ 83
           ++  +   VLR+  GD I L +GK   + ++I+ V  + R  V  +    +       + 
Sbjct: 18  EEAQHCTRVLRLGIGDEITLTDGKGHFYKAEIT-VATNKRCLVAIKETIFQEPLWPCHLH 76

Query: 84  YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K  +R +++ +K+ E+G   +  +  R+++      +R+    ISA +Q     
Sbjct: 77  IAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISAIKQSLKAR 136

Query: 143 LPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           LP +   T  + F+ + +     I    E  G +  L+ +       +  +LIGPEG + 
Sbjct: 137 LPKLNEMTDFDKFIAQEFQGQKFIAHCYE--GEKPQLKNVLKAGE--DALVLIGPEGDFS 192

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            EE +      F TP+SLG   LR++TAA+ A
Sbjct: 193 EEEVKKAIECGF-TPISLGKSRLRTETAALVA 223


>gi|315167500|gb|EFU11517.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1341]
          Length = 245

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKRQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|255972384|ref|ZP_05422970.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975487|ref|ZP_05426073.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256619449|ref|ZP_05476295.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256762904|ref|ZP_05503484.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256853489|ref|ZP_05558859.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256959288|ref|ZP_05563459.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257079354|ref|ZP_05573715.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257082206|ref|ZP_05576567.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257090256|ref|ZP_05584617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257422237|ref|ZP_05599227.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294779744|ref|ZP_06745131.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1]
 gi|300860530|ref|ZP_07106617.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD
           Ef11]
 gi|255963402|gb|EET95878.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968359|gb|EET98981.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256598976|gb|EEU18152.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684155|gb|EEU23850.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256711948|gb|EEU26986.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256949784|gb|EEU66416.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256987384|gb|EEU74686.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256990236|gb|EEU77538.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256999068|gb|EEU85588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257164061|gb|EEU94021.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294453118|gb|EFG21533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1]
 gi|295113239|emb|CBL31876.1| RNA methyltransferase, RsmE family [Enterococcus sp. 7L76]
 gi|300849569|gb|EFK77319.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD
           Ef11]
 gi|323481110|gb|ADX80549.1| RNA methyltransferase family protein [Enterococcus faecalis 62]
 gi|327535490|gb|AEA94324.1| RsmE family RNA methyltransferase [Enterococcus faecalis OG1RF]
          Length = 250

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 17  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 76  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 194

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242


>gi|216264326|ref|ZP_03436318.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221217796|ref|ZP_03589264.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223888845|ref|ZP_03623436.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224533755|ref|ZP_03674343.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|225550091|ref|ZP_03771051.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|226321674|ref|ZP_03797200.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
 gi|215980799|gb|EEC21606.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221192473|gb|EEE18692.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223885661|gb|EEF56760.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224513048|gb|EEF83411.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|225369203|gb|EEG98656.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|226232863|gb|EEH31616.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 42/238 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFGKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D+
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFVRFNTP------ILRADTAIIYSLAYFKALLEDY 241


>gi|307287880|ref|ZP_07567913.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109]
 gi|306501025|gb|EFM70332.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109]
          Length = 251

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|189467796|ref|ZP_03016581.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM
           17393]
 gi|189436060|gb|EDV05045.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM
           17393]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75
           I+T+ +   ++  +   VLR+  GD I L +GK   + ++IS     + +   +E   + 
Sbjct: 9   IQTRAELPEEEAQHCIRVLRLNIGDQITLTDGKGYFYRAEISAATNKRCMVNILETIYQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++     ++R+    +SA
Sbjct: 69  PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKIERISKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T   +F+ + +     I    E    E  L K   +    +  +L
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFIAQPFKGQKFIAHCYE---GEKPLLK-DVLRKGEDALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  EE +      F TP+SLG   LR++TAA+ A
Sbjct: 185 IGPEGDFSEEEVQKAIENGF-TPISLGKSRLRTETAALVA 223


>gi|169628757|ref|YP_001702406.1| hypothetical protein MAB_1667 [Mycobacterium abscessus ATCC 19977]
 gi|169240724|emb|CAM61752.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 258

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGK----DGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           GD+ H+ A VLRM+ G+ +++ +G     DG  ++ +   G +I     +   +   +  
Sbjct: 23  GDEGHHAARVLRMRVGEPVMVCDGAGEVGDGV-VASVDRTGLAIEVTGRWSVAAVNPK-- 79

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAA- 135
           V  + +  K++R D  +  +VE G   + P      ++R+  +      R       AA 
Sbjct: 80  VTVVQALPKSDRSDLAVDLAVEAGADEVIPWQAQRCVSRWDAHKAEKGRRRWEAVAQAAS 139

Query: 136 ---EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPNVA 191
               +  + ++P ++    L  L+        +V       +E+ L  L A ++   +V 
Sbjct: 140 RQSRRAHVPSVPELHSTAQLAELVGARAAGGAVVLVLHES-AESGLGALGARLSSASSVV 198

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +++GPEGG   EE   L       P+ LGP +LR+ +
Sbjct: 199 LIVGPEGGVADEELRILADA-GAAPVRLGPTVLRTSS 234


>gi|163840667|ref|YP_001625072.1| 16S ribosomal RNA methyltransferase RsmE [Renibacterium
           salmoninarum ATCC 33209]
 gi|162954143|gb|ABY23658.1| coserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 256

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDV 82
           +GD+ H+ A V R+   +++ + +G  G  L+ I          V  QSR      Q  +
Sbjct: 25  AGDEGHHAATVKRIAVDEHLDIVDGV-GLRLNCIVLQTAPGTLTVRVQSRLAEPAPQPRL 83

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAE 136
             + +  K  R +  I+ + E+G+ A+      R ++    +    +M +      +A +
Sbjct: 84  VLVQALAKDGRDELAIETATELGVDAVIPWQADRSIVRWRPERVEKSMAKWAKTIQAATK 143

Query: 137 QCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           Q      P +  P     L+K       +  +V  +E   + + L+ +     +  + ++
Sbjct: 144 QARRARTPLLLDPVDSPGLVKRIALLPKSRMLVLHEE--ATTDLLQLVDQYKDVEELLLV 201

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG    E E L S      L LGP +LRS TA  AA+ L+    G W
Sbjct: 202 VGPEGGMSDRELE-LFSSAGSEKLRLGPHVLRSSTAGPAAVVLLSEALGRW 251


>gi|299142603|ref|ZP_07035734.1| RNA methyltransferase, RsmE family [Prevotella oris C735]
 gi|298576038|gb|EFI47913.1| RNA methyltransferase, RsmE family [Prevotella oris C735]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 98/208 (47%), Gaps = 5/208 (2%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT- 91
           VLR++ GD++ L +G+   + +++S     K +    E   + +T +  +    +P K  
Sbjct: 29  VLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYTIKENLPQQKTWRGHIHLAIAPTKNI 88

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
           +R++++ +K+ E+G   +  +   +++      DR+    +SA +Q     +P +    +
Sbjct: 89  DRMEWLAEKATEIGFDELSFLHCAFSERKVLRADRIEKIVVSAVKQSRKPWMPQVNALES 148

Query: 152 L-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS 210
             +F+ +  +    I    E    ++   ++        + +L+GPEG +  +E     +
Sbjct: 149 FKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDDQKNEQITVLVGPEGDFSIDEVRLAMA 208

Query: 211 LPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             + + +SLG   LR++TA + A+ + Q
Sbjct: 209 QGYES-ISLGESRLRTETAGLMAVTMAQ 235


>gi|34558434|ref|NP_908249.1| 16S ribosomal RNA methyltransferase RsmE [Wolinella succinogenes
           DSM 1740]
 gi|34484153|emb|CAE11149.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 220

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 28/222 (12%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           +  G+++HYL  V R K  +  L  N +DG+ +  K + + K      + +     ++  
Sbjct: 15  RIEGEEFHYLFKVRRTKSEELPLFRNLEDGKLYRYKAAEIAKR---HADLELLEAKEEEK 71

Query: 82  VQYIFSPIKTNRLDY-MIQKSV----EMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAA 135
           +   F  +    +D   I+KS+    E+G+G I     RY+Q +   +M+R+    I + 
Sbjct: 72  IPCAFFHLLWAVVDAKTIEKSLPMLNELGVGKISFFYARYSQRDIRLDMERLGRILIHSC 131

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV--AIL 193
           EQ     LP I     LE LL+ +     + F  E                 P V  AI+
Sbjct: 132 EQSGRTRLPVIECFKNLEELLECYSDFGVMDFGGEILQ--------------PKVCQAIM 177

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +GPEGG+  EE+E L      +  S    IL+S+TAA+ A+A
Sbjct: 178 VGPEGGFSQEEREKLVGQKRYS--SGENLILKSETAALFALA 217


>gi|229545442|ref|ZP_04434167.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX1322]
 gi|229549686|ref|ZP_04438411.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC
           29200]
 gi|307268138|ref|ZP_07549525.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248]
 gi|307275914|ref|ZP_07557047.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134]
 gi|307277697|ref|ZP_07558783.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860]
 gi|307295909|ref|ZP_07575741.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411]
 gi|312900878|ref|ZP_07760172.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470]
 gi|312902754|ref|ZP_07761958.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635]
 gi|312951285|ref|ZP_07770186.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102]
 gi|229305166|gb|EEN71162.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC
           29200]
 gi|229309358|gb|EEN75345.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX1322]
 gi|306496240|gb|EFM65819.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411]
 gi|306505576|gb|EFM74760.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860]
 gi|306507244|gb|EFM76381.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134]
 gi|306515528|gb|EFM84056.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248]
 gi|310630721|gb|EFQ14004.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102]
 gi|310633808|gb|EFQ17091.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635]
 gi|311291977|gb|EFQ70533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470]
 gi|315028901|gb|EFT40833.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4000]
 gi|315034530|gb|EFT46462.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0027]
 gi|315152591|gb|EFT96607.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0031]
 gi|315157276|gb|EFU01293.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0043]
 gi|315159889|gb|EFU03906.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0312]
 gi|315161371|gb|EFU05388.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0645]
 gi|315163668|gb|EFU07685.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1302]
 gi|315169384|gb|EFU13401.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1342]
 gi|315174316|gb|EFU18333.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1346]
 gi|315576685|gb|EFU88876.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0630]
 gi|329568734|gb|EGG50534.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1467]
          Length = 245

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|308177465|ref|YP_003916871.1| hypothetical protein AARI_16860 [Arthrobacter arilaitensis Re117]
 gi|307744928|emb|CBT75900.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
          Length = 257

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 33/242 (13%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82
           +G + H+   V R+  G+++ L +GK      +++   K +   V+   R++   SD  V
Sbjct: 25  AGAEAHHAVTVKRVTAGEHLDLLDGKGLRLTVEVTATAKDL-LSVKVLRRTEEAISDHPV 83

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAE 136
             + +  K +R    ++  VE+G+ A+RP      I R+        M + R    SA +
Sbjct: 84  TLVQALSKGDRDLQAVESGVELGVLAVRPWQADRSIVRWNAAKVDKAMAKWRAQVRSAQK 143

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---------ENSLEKLHAIAHI 187
           Q      P +  P   + L K        + AD   G+         ENS+ +   I+ +
Sbjct: 144 QSRRAYEPEVLAPLGSKELAKT-------IAADVANGALVLVLHEQAENSVAE-RVISWL 195

Query: 188 P------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           P       V +++GPEGG    E ++         L LG  +LR+ TA  AA+ L++ + 
Sbjct: 196 PRAHAGQEVIVIVGPEGGISDTELQSFIDAGAHAAL-LGQHVLRASTAGPAALVLIRHLI 254

Query: 242 GD 243
           G+
Sbjct: 255 GE 256


>gi|257087179|ref|ZP_05581540.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256995209|gb|EEU82511.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 250

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 17  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 75

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 76  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 135 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEKSQLAQVLSTCQPGA 194

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 195 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 242


>gi|15829013|ref|NP_326373.1| hypothetical protein MYPU_5420 [Mycoplasma pulmonis UAB CTIP]
 gi|14089957|emb|CAC13715.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 223

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 15/157 (9%)

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQC-DI 140
           S I T R +  IQK+ E+G+    P++++  +    N     + R +T  ++A EQ    
Sbjct: 73  SVINTKRFELTIQKAAELGVSLFIPMLSQNVEQKLGNDIDKKLQRWKTIALNACEQSFRN 132

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +   YP        K+++   ++   ++    E + + L   +   N   LIGPEGG+
Sbjct: 133 KVMEITYP--------KSFNEVIEMEVKNKYIAHEKAKDFLTKSSFETNSLFLIGPEGGF 184

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +E +      F   + LG RILR++TAA   ++ +
Sbjct: 185 SQKEIDLAQEKSF-ELIWLGKRILRAETAAFFVLSRI 220


>gi|33240474|ref|NP_875416.1| hypothetical protein Pro1024 [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238002|gb|AAQ00069.1| Uncharacterized conserved protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 254

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 36/258 (13%)

Query: 5   SHLKRLFVDFPLCIKTQG------KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK- 57
           + L+RL +D PL I            +G + HYLA VLR++ GD+I + +G    W +  
Sbjct: 2   AELRRLLID-PLRINKSSLNNNIIDLTGQESHYLARVLRLRYGDHINIVDGVGHLWTADF 60

Query: 58  ISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
           I      +   +     +++K++ +  +   +     D +++ S E+G+  ++P+I+  +
Sbjct: 61  IKEDLIKLHSDLSNPEVTESKKNPLICLAVVVPKQDFDDILRMSTEIGIDVLQPIISDRS 120

Query: 118 QNTHYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKN-W--DHNCQIVFADET 171
              ++  +RV+ +      A EQ + L     + P   E +  N W   +    + A  T
Sbjct: 121 VVRNFQSERVKRWDSIINEAVEQSEQL-----WKPKLKEIICFNEWIDIYRKSTLMALGT 175

Query: 172 CGSENSLEKLHAIAHIPN----VAILIGPEGGYH------SEEKETLHSLPFVTPLSLGP 221
              +N++     +  I +    + I IGPEGG+       + EKE  + L       L  
Sbjct: 176 TRIDNAIPFESLLNDIKDDLNQICIAIGPEGGWSNHEIFLAREKECANVL-------LAD 228

Query: 222 RILRSDTAAVAAMALVQA 239
            IL++ TAA+ A  ++ +
Sbjct: 229 TILKNTTAAIVATQIMSS 246


>gi|315025980|gb|EFT37912.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2137]
          Length = 245

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|148272747|ref|YP_001222308.1| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830677|emb|CAN01617.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 252

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDV 82
           +G +  +   V R++ G+ IL+ +G+ G   S    S   + +  +V+           V
Sbjct: 24  AGQEARHAVTVSRVRSGEGILVGDGR-GTIASGTVTSAEPQRLELRVDAVEAHPEPTPRV 82

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136
             + +  K +R +  +Q + E+G+ A+ P      ++R+  Q      DR R     A +
Sbjct: 83  VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAVK 142

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAI 192
           Q     +P +    T + L++      +++  D T  +  S   L           +V +
Sbjct: 143 QSIRPRVPEVEALATTKDLVRM-AATARVLVLDPTAVARLSRLDLATADGDAGPATDVLL 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG    E E+L +   + P++LGP ILR+ TA  AA+ALV A  G W
Sbjct: 202 VVGPEGGIAPAEVESLRAAGAI-PVALGPGILRTSTAGPAALALVNAALGRW 252


>gi|330686119|gb|EGG97740.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU121]
          Length = 250

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 18/220 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF--- 86
           H++ +V+R  EG  I++       +  KI ++      +VE   +        Q+I    
Sbjct: 25  HHIKNVMRHSEGQLIVITFNDQNVYTCKIIHLADQ-EVEVELIEKQDIDTELPQHITICS 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
             IK ++ ++MIQK+ E+G          R ++          ++R +     AAEQ   
Sbjct: 84  GLIKADKYEWMIQKATELGASGFIAVEMQRSIVKLNHTKVSKKLERWQKIIKEAAEQSYR 143

Query: 141 LTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK--LHAIAHIPNVAILIG 195
           LT+P   ++    ++  ++  +D+   + + +E    E S  K  L        V ++ G
Sbjct: 144 LTIPHISYLSNSKSICDIINQYDY-VLVAYEEEAKHGEISHFKHMLKQFKPQDRVLLIFG 202

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           PEGG   EE   L S   +  + LGPRILR++TA +  + 
Sbjct: 203 PEGGLSDEEVSMLKSHSQL--VGLGPRILRAETAPLYTLG 240


>gi|223934148|ref|ZP_03626091.1| protein of unknown function DUF558 [Streptococcus suis 89/1591]
 gi|223897189|gb|EEF63607.1| protein of unknown function DUF558 [Streptococcus suis 89/1591]
          Length = 248

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK+ E+GM A+        V+    +      +++      AAEQ     +
Sbjct: 84  KGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKLGKKAEKLEKIAQGAAEQSKRNRI 143

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGP 196
           P +      ++FL  L  +D   QI+ A E    E    N ++ L  +    +V +++GP
Sbjct: 144 PAVRLFEKKVDFLAQLAGFD---QIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGP 200

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG   EE         V    LGPRILR++TA + A++ +
Sbjct: 201 EGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSAI 240


>gi|222100185|ref|YP_002534753.1| hypothetical protein CTN_1211 [Thermotoga neapolitana DSM 4359]
 gi|221572575|gb|ACM23387.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 222

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 109/213 (51%), Gaps = 20/213 (9%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYIF 86
           + H++  V+R+KEG+ +   +G+   +   ++ + KS    K+    + + + S+   + 
Sbjct: 20  EAHHM-RVVRLKEGETVETTDGEGFSYTCVLTRLKKSEAVAKILKIEKKEEEPSEKLKVV 78

Query: 87  SPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLP 144
            PI +  R   +I+K VE+G   I  ++ R+ ++ H  ++++       AA+QC      
Sbjct: 79  VPIGRWERTRLLIEKCVELGADEI--LLYRFERSQHSVSLEKSLLVVREAAKQCR----R 132

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           +++P   +   ++N D + + +  D   GS N LE    +    ++ I++GPEGG+   E
Sbjct: 133 YLFPKVKM---VENLDFDEKAITLDPD-GSVNLLE----MDVSGSITIVVGPEGGFSERE 184

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           KE L     +  ++LG +ILR +TAA+  +  +
Sbjct: 185 KELLKQRTIL--VNLGRKILRFETAAILTVGYI 215


>gi|254774749|ref|ZP_05216265.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 253

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 25/220 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
            GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +V  +         V 
Sbjct: 21  GGDEGFHAASVRRIRPGEQLVLGDGAGGLAHCEVEHAGRDGLRARVLKRWSVAPGTPPVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
            + +  K+ R +  I+ + E G        A R V   +       + R R    SAA Q
Sbjct: 81  VVQALPKSARSELAIELATEAGADGFLAWQAARCVANWHGARVEKGLRRWRAVARSAARQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-------ENSLEKLHA--IAHIP 188
                +P +    +   L             DE  G        E++ E+L    +A   
Sbjct: 141 SRRAHIPLVDGVLSTPALTSR--------IRDEVAGGATVLALHESATERLADADLAGAT 192

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +V +++GPEGG   +E   L S    T + LGP++LR+ T
Sbjct: 193 SVLLVVGPEGGIADDEMAAL-SDAGATAVRLGPQVLRTST 231


>gi|224531913|ref|ZP_03672545.1| conserved hypothetical protein [Borrelia valaisiana VS116]
 gi|224511378|gb|EEF81784.1| conserved hypothetical protein [Borrelia valaisiana VS116]
          Length = 243

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 42/237 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD   ILL   KD E  +S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRLKKGDKLKILL---KDKELRMSEIVKIGSNFIKFATNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      NT     R       A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQIVEIGVSEINIINADRSVSKIDISNTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++      G   S E    I       
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTKYYVAHQSGMLL-----GKNESFENFSKI------G 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++A  +A+  D
Sbjct: 190 IIIGPEGCFSDSEISFFKEKDFNFVRFNTP------ILRADTAIIYSLAYFKALLED 240


>gi|172041014|ref|YP_001800728.1| hypothetical protein cur_1334 [Corynebacterium urealyticum DSM
           7109]
 gi|171852318|emb|CAQ05294.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 245

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 34/244 (13%)

Query: 21  QGKASGDQYHYL------AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
           QG A GD           + V R+ +G+ +++ +G         S  G  +   +E    
Sbjct: 8   QGVAVGDSVQLTGAEARHSQVKRIADGEAVIVSDGAATAVRGTFSSAGVHVSELLELPQP 67

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRT 129
           S      V  + +  K++R +  +   V+ G   I P      I R+ +     + R   
Sbjct: 68  SPR----VTIVQALPKSDRSELAVDLMVQAGADRIIPWAASRCIARWDKKEDKALARWEK 123

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH------- 182
              +A +Q   L LP I        LL+N     ++V    +  S   L  LH       
Sbjct: 124 TAFAATKQSRRLVLPEIT------GLLRNLTDLPKLVPGLASPASTARLGMLHEDARGSF 177

Query: 183 -----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  A + ++ ++IGPEGG   EE  TL  L   + + LGP +LR+ TA   A+  +
Sbjct: 178 RTFVEGAADVEDIVLVIGPEGGIAPEELATLEELGGQS-VVLGPEVLRTATAGAVALGAI 236

Query: 238 QAIC 241
            A+ 
Sbjct: 237 GALT 240


>gi|270293092|ref|ZP_06199303.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143]
 gi|270279071|gb|EFA24917.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143]
          Length = 251

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 15/224 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88
            ++  V+R+KEGD + L      + L+++  V ++ +F++  +  +   +  VQ   +  
Sbjct: 27  KHMFQVMRLKEGDEVTLVFEDGIKRLARVLNV-EARQFEL-LEELADNVELPVQVTIASG 84

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ    
Sbjct: 85  FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 144

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197
            +P I         L   D    IV A E    E      L+ +  +A    +  + GPE
Sbjct: 145 LVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEGEASALLQAVTGLATGAKLLFIFGPE 204

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG    E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 205 GGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 247


>gi|167765138|ref|ZP_02437251.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC
           43183]
 gi|167696766|gb|EDS13345.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC
           43183]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75
           I++Q +   ++  +   VLR++ GD + L +GK   + ++IS     + +   +E   ++
Sbjct: 9   IQSQAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATTKRCLVNILETIPQA 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T    F+ + ++    I    E    E  L K   +    +  +L
Sbjct: 129 IKQSLKARLPRLNGMTDFNRFISQPFEGRKFIAHCYE---GEKPLLK-DVVRKGEDALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  EE +      F  P+SLG   LR++TAA+ A
Sbjct: 185 IGPEGDFSEEEVKQAIENGF-EPISLGRSRLRTETAALVA 223


>gi|167912563|ref|ZP_02499654.1| hypothetical protein Bpse112_18894 [Burkholderia pseudomallei 112]
          Length = 200

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 66  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 124

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
              +     +   R    ++ EQC    LP I P
Sbjct: 125 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP 158


>gi|330837775|ref|YP_004412416.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
 gi|329749678|gb|AEC03034.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
          Length = 263

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 35/246 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGE---WLSKISYVGKS--IRFKVEYQSRSQTKQ 79
           S  +  YL  VLR  EG     F+G+D     WL  +  VG S  +R     +  +    
Sbjct: 19  SPKESRYLVSVLRFPEGKT---FSGRDASGTPWLLTLQKVGASYGLRCTPATEDDATENA 75

Query: 80  SDVQYIFSP-----------IKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYN 123
           +D   +++            +K  +L+ +I+++ EMG+  I PV     +  +  +   N
Sbjct: 76  ADAMPLYTGFLPAIHLFPCLLKGKKLEGVIRQACEMGVRRITPVHSAHCVASFVDDEKRN 135

Query: 124 MDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE------TCGS 174
             +++ +      A +Q     +  + P      +   W  +   +F  +      + G 
Sbjct: 136 AGKIQRFEAQVREAVQQSGSRIITEVTPAIPFSDIPTAWGSSGPGLFFHQGQNDALSFGQ 195

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             +L + H +A  P +AI+IGPEGG   EE   L +  F   L L   ILR++TAA+ A+
Sbjct: 196 RIALIRNHVLAGAP-LAIVIGPEGGLSPEECALLEASGFHGVL-LKTNILRAETAAIYAI 253

Query: 235 ALVQAI 240
           A  Q++
Sbjct: 254 AAAQSL 259


>gi|315033292|gb|EFT45224.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0017]
 gi|315143405|gb|EFT87421.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2141]
          Length = 245

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--- 189
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 CLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|289523493|ref|ZP_06440347.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503185|gb|EFD24349.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQS----- 80
           + H+L HV R + G+    F G            G+ +  K+E   Q R   K++     
Sbjct: 8   ESHHLVHVRRCRIGEE---FEG---------LLEGRKLLLKIEGYEQGRVIAKETGKLPI 55

Query: 81  -----DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTY 130
                 +  + + +K N  + ++  + E+G+  I P+     + +        M+R R  
Sbjct: 56  YERSRQISLLIALVKNNAFEDILNHATELGVAEIIPILAERSVVQLKGQLTKKMERWRRI 115

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGSENSLEKLHAIAH 186
              A +   I   P ++ P  +  L      + +++ A     +  GS N       I  
Sbjct: 116 IAEATKISGIGNPPLLHTPLKVLDLRDESLPSLRLLGALTDDAKPLGSVN-------IKQ 168

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +V   +GPEG +   E      L F+ P+SLGP ILR++TAA+A ++ +
Sbjct: 169 QEDVVFAVGPEGDWTEGEMAYFARLKFL-PVSLGPNILRANTAAIAGLSYI 218


>gi|254819390|ref|ZP_05224391.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 253

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 25/220 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
            GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +V  +         V 
Sbjct: 21  GGDEGFHAASVRRIRPGEQLVLGDGAGGLARCEVEHAGRDGLRARVLKRWSVAPGTPPVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
            + +  K+ R +  I+ + E G        A R V           + R R    SAA Q
Sbjct: 81  VVQALPKSERSELAIELATEAGADGFLAWRAARCVANWQGARVEKGLRRWRAVARSAARQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-------ENSLEKL-HA-IAHIP 188
                +P +    +   L             DE  G        E++ E+L HA +A   
Sbjct: 141 SRRAHIPPVDGVLSTPALTSR--------IRDEVAGGATVLALHESATERLAHADLAGAT 192

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +V +++GPEGG   +E   L S    T + LGP++LR+ T
Sbjct: 193 SVFLVVGPEGGIADDEMAAL-SDAGATAVRLGPQVLRTST 231


>gi|78779053|ref|YP_397165.1| hypothetical protein PMT9312_0668 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712552|gb|ABB49729.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 257

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 33/234 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S ++ HY+  V+R+K G  I + NGK   W        K+I+ K +     Q K+    Y
Sbjct: 25  SKEEAHYINKVMRIKNGKEIFISNGKGSLW--------KAIKVKNDCLEIIQFKKP---Y 73

Query: 85  IFSP-----------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYT 131
           +F             I  +  + +++   E+G+  I+P+ +    N + N  R  +R  +
Sbjct: 74  LFQEQEIYLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNS 133

Query: 132 I--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAH 186
           I   A EQ + L  P I     +   LK+ D+  ++  +   ++T    N   +    A 
Sbjct: 134 IINEAVEQSERLWKPSILNGMDIIEWLKSRDNQERVSISITREDTTYDLNQWIRKQQEAV 193

Query: 187 IPNVAI---LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                I   +IGPEGG+ S+E +  +    +T + L   ILR+ TA++ A +++
Sbjct: 194 NKKGGIFWNVIGPEGGWSSKEIDFFNK-NNITFVKLSDNILRTSTASINASSIL 246


>gi|171463044|ref|YP_001797157.1| protein of unknown function DUF558 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192582|gb|ACB43543.1| protein of unknown function DUF558 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 253

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 23/227 (10%)

Query: 30  HYLAHVLRMKEGDNILLFNGK----DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           H+L  V R++ G+   +F+GK     GE LS     G+     +   +  +T  + +   
Sbjct: 24  HHL-RVRRIQIGEFFPVFDGKGQIAKGELLSLGGKTGQVQLTNIRTDTHRETPYA-ITLA 81

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPV--------ITRYT--QNTHYNMDRVRTYTISAA 135
                 +++D++++K+VE G   I P+        +TR +  + T   +        +A 
Sbjct: 82  QGLAGGDKMDWIVEKAVETGAQNIAPMQCERSILKLTRSSDAERTQKRLAHWEGIIQAAC 141

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHAIAHIP-NVAIL 193
           EQCD      + P  T E  LK       +++ + +   S  S+     I + P ++ ++
Sbjct: 142 EQCDRTVFASLEPIQTFESYLKAAPKPALKLLLSPDASKSMYSV----LIENKPQDIVLM 197

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           IGPEGG HS E+E          +SLG R+LR++TA V A+  V ++
Sbjct: 198 IGPEGG-HSPEEEAQAEAAGYQLVSLGERVLRTETAGVVAITAVHSV 243


>gi|299783149|gb|ADJ41147.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 244

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDXATA-E 59

Query: 67  FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
            KVE Q      +  ++   +   P    + + ++QK+ E+G   I      R V     
Sbjct: 60  VKVE-QDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175
           Q     ++R++    +AAEQ     +P +     L+ LL  +  + ++V  +E+   G  
Sbjct: 119 QRQGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGER 178

Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +   +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  M
Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237

Query: 235 ALV 237
           A V
Sbjct: 238 AAV 240


>gi|315149224|gb|EFT93240.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0012]
          Length = 245

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|195978884|ref|YP_002124128.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975589|gb|ACG63115.1| hypothetical protein Sez_1788 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 248

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 19/225 (8%)

Query: 27  DQYHYLAHVLRMKEGDN-ILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQY 84
           D   ++  V+R+ + +  +L+F+  DG  + +++ V  S  ++VE  +   +  +  V+ 
Sbjct: 20  DTIKHMFQVMRLTDKEELVLVFD--DG--IKRLARVSDSSAYEVELIKELEENLEMPVEV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAE 136
             +    K ++LD + QK+ E+G  AI        V+   ++      +++    + AAE
Sbjct: 76  TIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKKLAKKQEKLAKIALGAAE 135

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENS--LEKLHAIAHIPNVAI 192
           Q     +P I        LLK       C I + +     E S    +L  ++    V  
Sbjct: 136 QSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERSTLARELAGLSPGQKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG   +E         +T + LGPRI+R++TA + A++ V
Sbjct: 196 IFGPEGGISPKELAGFKQAGAIT-VGLGPRIMRTETAPLYALSAV 239


>gi|293363228|ref|ZP_06610112.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2]
 gi|292553087|gb|EFF41836.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2]
          Length = 230

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 16/158 (10%)

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-------NMDRVRTYTISAAEQCD 139
           S IK  R +++IQK++E+G   I P+I+++T  + Y         DR  T   SA EQ  
Sbjct: 74  SIIKIERYEWLIQKAIELGATKIVPIISKHTDGSIYKHDKFAKKYDRFNTIIKSATEQS- 132

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAHI-PNVAILIGPE 197
                F     TL+ ++       +  + +      E  L+K   +  I  +V   +GPE
Sbjct: 133 -----FRNKLITLDPIMDYKKAIYKYKYINNKYIAHEIDLQKTSKLDKIKSDVIFFVGPE 187

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GGY   E +      +   + LG RILR++TA++  ++
Sbjct: 188 GGYDQSEIDYALENNY-KCIYLGKRILRAETASIYLLS 224


>gi|270291335|ref|ZP_06197557.1| ribosomal RNA small subunit methyltransferase E [Pediococcus
           acidilactici 7_4]
 gi|270280181|gb|EFA26017.1| ribosomal RNA small subunit methyltransferase E [Pediococcus
           acidilactici 7_4]
          Length = 245

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 21/237 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64
           ++R F++  L ++ +   S    H+L  V+R + G+ I +       WLS++  + V  S
Sbjct: 1   MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQKVWLSQLLDNAVPAS 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           ++  V+  ++S     +V       K ++ + +I++  EMG    +    RY+      +
Sbjct: 61  LK-AVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R      +AAEQ     +P +   +  + +     H    + A E    E   
Sbjct: 120 KIDRKLQRFEEIAKAAAEQSHRQMIPTVEIISFADLVNSPVQHR---MVAYEESAKEGEF 176

Query: 179 EKLHAIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                +  + N A       + GPEGG   EE ++ +   F T   LGPRILR+++A
Sbjct: 177 ANFKRV--LSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESA 230


>gi|26553614|ref|NP_757548.1| hypothetical protein MYPE1610 [Mycoplasma penetrans HF-2]
 gi|26453620|dbj|BAC43952.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 234

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTY 130
           +++   K  D+      IK    +  + K  E+ +  I PV   Y+Q N + N  R+   
Sbjct: 63  ENKLSNKPYDITCFLGVIKKQNFELAVVKLSELNIKKIIPVYFDYSQRNINLNYQRLDIL 122

Query: 131 TISAAEQCD-ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
              + +QC+ I  L    P T  + + K  D NC  +  +    SE    K+   +++ N
Sbjct: 123 IKESQKQCNRIAKLEIDEPITFNDMVNKLNDFNCNFIAYEHQDLSE--WNKIKNNSNLNN 180

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++ ++GPEGG+  +E   L +      L L   IL+++TA++   +++
Sbjct: 181 ISYIVGPEGGFSGKEINELKNKCIF--LKLTNTILKTETASIYLASIL 226


>gi|325969870|ref|YP_004246061.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
 gi|324025108|gb|ADY11867.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
          Length = 263

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 36/262 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           L R F   PL ++ +GK S     YL  VLR++ G  IL  +G+  ++L  ++ +     
Sbjct: 6   LPRSFDGEPL-LELEGKES----QYLTRVLRLQIGQQILGLDGQGRKFLLTLTEIKNQSC 60

Query: 64  SIRFK-VEYQSRSQTKQSDVQY---------IFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113
           ++  K VE   + +T  +   Y         +    K  + + + +++ E+G   +  V 
Sbjct: 61  TLSCKLVEPGMQVETTDTLPSYQGPYPNLVLLQCLCKGKKEEQIFRQATEIGATTLALVS 120

Query: 114 TRYT---------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNC 163
           +RY          +      DR+      A +Q        + P    L  +   WD   
Sbjct: 121 SRYCVTDLSDKKDKAVRARFDRLEAQIKEALQQSGSPIATNLVPQVLDLRDVPSWWDGQG 180

Query: 164 QIVFADETCGSE-----NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
             +F  ++  SE      SL K H +     V +LIGPEGG+  EE   L    F  P+ 
Sbjct: 181 LAIFFHQSTRSEEQQTLTSLLKDHPLDK--PVCVLIGPEGGFSDEECTFLEKEGF-KPVV 237

Query: 219 LGPRILRSDTAAVAAMALVQAI 240
           L   ILRS+TA + A+A +Q +
Sbjct: 238 LKTNILRSETAGIYALAAIQVL 259


>gi|330833709|ref|YP_004402534.1| hypothetical protein SSUST3_1939 [Streptococcus suis ST3]
 gi|329307932|gb|AEB82348.1| protein of unknown function DUF558 [Streptococcus suis ST3]
          Length = 248

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK+ E+GM A+        V+    +      +++      AAEQ     +
Sbjct: 84  KGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKLCKKAEKLEKIAQGAAEQSKRNRI 143

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGP 196
           P +      ++FL  L  +D   QI+ A E    E    N ++ L  +    +V +++GP
Sbjct: 144 PAVRLFEKKVDFLAQLAGFD---QIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVGP 200

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG   EE         V    LGPRILR++TA + A++ +
Sbjct: 201 EGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSAI 240


>gi|332358374|gb|EGJ36199.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK49]
          Length = 250

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 19/229 (8%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84
           D   ++  V+R+KEGD + L+F+  DG  + +++ V    +  +E  +  +   +  VQ 
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFD--DG--MKRLARVLDPSQQSLEILEELADNTELPVQV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    K ++L+++ QK  E+G   I      ++      +      +++      AAE
Sbjct: 76  TIASGFPKGDKLEFITQKVTELGASGIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135

Query: 137 QCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAI 192
           Q     +P I +     +FL    D +  IV  +E+  +  S   + A++ +     V  
Sbjct: 136 QSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKAGESAALVRALSGLEAGAKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           + GPEGG   EE         V+   LGPRILR++TA + A+  V  + 
Sbjct: 196 IFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLS 243


>gi|315147638|gb|EFT91654.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4244]
          Length = 245

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD 81
           K + + YH++  V+RM   D   L+F  K       +     S+ FK E       K+  
Sbjct: 12  KVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFK-EISKEEMDKELP 70

Query: 82  VQYIFS---PIKTNRLDYMIQKSVEMGMGAI--RPVITRYTQNTHYNM----DRVRTYTI 132
           ++   +   P K ++L++++QK  E+G       P  T   +  H        R++    
Sbjct: 71  IEVTIACGLP-KGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEKRLQKIAT 129

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI----P 188
            AAEQ      P +      + ++  +D    ++ A E    +    +L  +        
Sbjct: 130 EAAEQSHRQQTPNVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVLSTCQPGA 189

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +L GPEGG+  +E E            LGPRILR++TA +  ++ V
Sbjct: 190 RLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAV 237


>gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 [Thermomonospora curvata DSM 43183]
 gi|268312416|gb|ACY98790.1| protein of unknown function DUF558 [Thermomonospora curvata DSM
           43183]
          Length = 244

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 32/237 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY--QSRSQTKQSDVQ 83
           G +  +   V R++ G+ + L +G        ++ V    R  +E   + R Q     + 
Sbjct: 22  GPEGRHAVTVRRLRPGERVDLTDGDGLLAECVVAAVAGKDRLVLEVLARHRHQPPSPRLV 81

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAAEQ 137
            + +  K  R +  ++   E G+  I P      +TR+  +     + R RT    AA+Q
Sbjct: 82  VVQALPKGERGELAVETMTEAGVDEIVPWQAARCVTRWRPDRMDKALGRWRTTAREAAKQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI----- 192
                LP I P  T E +        + +              LH  A +P  A+     
Sbjct: 142 SRRSRLPQIPPLATTEQVAARLAGAARAIV-------------LHEAATVPLRAVDLPSE 188

Query: 193 -----LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                ++GPEGG   EE         V  + LGP +LR+ TA VAA A++ +  G W
Sbjct: 189 GEIIAVVGPEGGITDEELACFAEAGAVA-VRLGPTVLRTSTAGVAAAAILLSATGRW 244


>gi|312864025|ref|ZP_07724261.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis
           F0396]
 gi|322517605|ref|ZP_08070473.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|311100438|gb|EFQ58645.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis
           F0396]
 gi|322123770|gb|EFX95348.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 247

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
           P+ IK +     D   ++ +V+R+ E D ++L      ++L++++     +   +E  + 
Sbjct: 13  PVIIKDK-----DTVKHMFNVMRLAEDDQVVLVFEDGIKYLARVTDRENHVLEVIEVLNE 67

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVR 128
           +      V       K ++L+ + QK+ E+G  AI        V+    +      D++ 
Sbjct: 68  NVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWGFPADWSVVKWDGKKLAKKEDKLD 127

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI 187
              + AAEQ     +P +         L   D+  +I  A E       L  L   +AH+
Sbjct: 128 KIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELATLARELAHV 187

Query: 188 PN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ V
Sbjct: 188 ESGQKILFIFGPEGGISPSEIDAFEEAGGVK-VGLGPRIMRTETAPLYALSSV 239


>gi|167895917|ref|ZP_02483319.1| hypothetical protein Bpse7_19396 [Burkholderia pseudomallei 7894]
          Length = 193

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRP------VIT 114
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P      V+ 
Sbjct: 75  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVR 133

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
              +     +   R    ++ EQC    LP I P
Sbjct: 134 LSGERADKRVSHWRGVVRASCEQCGRNRLPEIAP 167


>gi|322388771|ref|ZP_08062368.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321140390|gb|EFX35898.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 247

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNLV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAHIPNVAILI---GPEGG 199
           P I         L  +D   +IV A E    E  S   + A+A +   A L+   GPEGG
Sbjct: 143 PSITLFEKKADFLAQFDQFDRIVVAYEESAKEGESAALIQAVAGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSAISVLL 243


>gi|184155285|ref|YP_001843625.1| hypothetical protein LAF_0809 [Lactobacillus fermentum IFO 3956]
 gi|183226629|dbj|BAG27145.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 249

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATL-LDPATAE 59

Query: 67  FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
            KVE Q      +  ++   +   P    + + ++QK+ E+G   I      R V     
Sbjct: 60  VKVE-QDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175
           Q     ++R++    +AAEQ     +P +     L+ LL  +  + ++V  +E+   G  
Sbjct: 119 QRQGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGER 178

Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +   +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  M
Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237

Query: 235 ALV 237
           A V
Sbjct: 238 AAV 240


>gi|322386664|ref|ZP_08060289.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269337|gb|EFX52272.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 247

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 24/241 (9%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQ 72
           PL +K +     D   ++  V+R+KEGD + L+F+  DG  + ++++V +  +  +E  +
Sbjct: 13  PLVVKDK-----DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLAHVLEPSQQSLEILE 63

Query: 73  SRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNM 124
             +   +  VQ   +    K ++L+++ QK+ E+G  AI      ++      +      
Sbjct: 64  ELADNTELPVQVTIASGFPKGDKLEFITQKATELGANAIWAFPADWSVAKWDSKKLAKKS 123

Query: 125 DRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           +++      AAEQ     +P +    T  +FL    D +  +V  +E+     +   + A
Sbjct: 124 EKLEKIAQGAAEQSKRNMIPEVRLFDTKADFLAVLADFDRIVVAYEESAKEGETAALVQA 183

Query: 184 IAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +  +     +  + GPEGG   +E         V+   LGPRILR++TA + A+  V  +
Sbjct: 184 VKGLDKGDKLLFIFGPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVM 242

Query: 241 C 241
            
Sbjct: 243 L 243


>gi|77409131|ref|ZP_00785845.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           COH1]
 gi|77172259|gb|EAO75414.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           COH1]
          Length = 246

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 21/226 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85
           D   ++ +V+R+ E D ++L      + L+K+  V  S  RF++  +  S  +      I
Sbjct: 20  DTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKV--VDSSAHRFQILEELDSNVEMPVQVTI 77

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQC 138
            S   K ++LD++ QK+ E+G  AI        V+    +      D++    + AAEQ 
Sbjct: 78  ASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQS 137

Query: 139 DILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVA 191
               LP           +  L  +D   +I  A E    E  +    + L  +     + 
Sbjct: 138 KRNRLPQVRLFEKKADFQAELAGFD---KIFIAYEESAKEGEMSALAQNLQTVKAGDKLL 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + GPEGG   +E      +  +  + LGPRI+R++TA + A++++
Sbjct: 195 FIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 239


>gi|315608164|ref|ZP_07883156.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250133|gb|EFU30130.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 244

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 103/213 (48%), Gaps = 12/213 (5%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQ-SRSQTKQSDVQYIFSPIKT 91
            VLR+K GD + L +G    + ++++   GK   ++++ +  +  T +  +    +P K 
Sbjct: 28  RVLRLKAGDEMFLMDGVGTFFRAEVTVAAGKHCMYEIKDRFPQHPTWRGHIHLAIAPTKM 87

Query: 92  -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
             R+++M++K+ E+G   I  +  ++++      DRV    +SA +Q      P +    
Sbjct: 88  MERMEWMVEKATEVGFDEISFLGCKFSERKVLRADRVEKIVVSAMKQSRKAWKPVVNTMC 147

Query: 151 TL-EFLL-----KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
           +  EF+      + +  +C   F  +   SE  +++        ++ +L+GPEG +  +E
Sbjct: 148 SFGEFMAVEHPGRKYICHCYEEFPKKDFFSE--IQETIDYEDNEDILVLVGPEGDFSVDE 205

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +      + + +SLG   LR++TA ++A+ + 
Sbjct: 206 VQLALEKGYES-VSLGRSRLRTETAGLSAVMMA 237


>gi|255693403|ref|ZP_05417078.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM
           17565]
 gi|260620787|gb|EEX43658.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM
           17565]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+            ++  Q 
Sbjct: 9   IQKSNELPDEEAQHCIRVLRLNIGDEITLTDGKGNFYKAEITAATNKRCLVAIKETVFQE 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWPCHLHIGMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISA 128

Query: 135 AEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T  + F+ + +     I    E  G +  L+ +       +  +L
Sbjct: 129 IKQSLKARLPKLNEMTDFDKFITREFKGQKFIAHCYE--GDKPLLKNILKPGE--DALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  EE +      FV P+SLG   LR++TAA+AA
Sbjct: 185 IGPEGDFSEEEVKKAIEQGFV-PISLGKSRLRTETAALAA 223


>gi|218129752|ref|ZP_03458556.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697]
 gi|317475901|ref|ZP_07935157.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987862|gb|EEC54187.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697]
 gi|316907934|gb|EFV29632.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I++  +   ++  +   VLR++ GD + L +GK   + ++IS            ++  QT
Sbjct: 9   IQSHAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNLLETIPQT 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERIAKILISA 128

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T   +F+ + ++    I    E  G +  L+ +  +    +  +L
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFISQPFNGRKFIAHCYE--GDKPLLKDI--VRKGEDALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  EE +      F  P+SLG   LR++TAA+ A
Sbjct: 185 IGPEGDFSEEEVKKAIENGF-EPISLGRSRLRTETAALVA 223


>gi|227544930|ref|ZP_03974979.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           CF48-3A]
 gi|300910042|ref|ZP_07127502.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185097|gb|EEI65168.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           CF48-3A]
 gi|300892690|gb|EFK86050.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 246

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87
           H+L  V+R + G ++ L       +L+ +S    +   K+  +  + S+   S       
Sbjct: 22  HHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTATLKINQKLDADSELPVSVTLACGI 81

Query: 88  PIKTNRLDYMIQKSVEMG------MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
           P    + + ++QK+ E+G        A R +           ++R++    SAAEQ    
Sbjct: 82  PKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRN 141

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGPEG 198
            +P +     L+ LL ++    +IV  +E+   G  ++L ++ +A+    ++  + GPEG
Sbjct: 142 KIPQVEYSANLDQLLADYPATKRIVAWEESAKQGETSALAQQFNALNLGDSLLAIFGPEG 201

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G    E   ++    V    LGPRILR++TA +  MA +
Sbjct: 202 GLTENEIAKMNEAGVVAA-GLGPRILRTETAPLYFMAAI 239


>gi|260662210|ref|ZP_05863106.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
 gi|260553593|gb|EEX26485.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
          Length = 249

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATL-LDPATAE 59

Query: 67  FKVEYQSRSQTKQSDVQYIFS---PIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
            KVE Q      +  ++   +   P    + + ++QK+ E+G   I      R V     
Sbjct: 60  VKVE-QDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWND 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSE 175
           Q     ++R++    +AAEQ     +P +     L+ LL  +  + ++V  +E+   G  
Sbjct: 119 QRQGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTIFSFDHRVVAWEESAKQGER 178

Query: 176 NSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +   +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  M
Sbjct: 179 AALATVFDQVTPGQSLLAIFGPEGGLTETEVETM-TAAGVVACGLGPRILRTETAPLYLM 237

Query: 235 ALV 237
           A V
Sbjct: 238 AAV 240


>gi|311113633|ref|YP_003984855.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310945127|gb|ADP41421.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 267

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 17/234 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQ 83
           +G + H+ A V R+  G+N+ L +G+ G  +  I     S   +V  Q+  +   S  V 
Sbjct: 37  TGPEAHH-AKVKRLAIGENLDLADGQ-GHRIHGIVSAISSKGLEVTVQNLDKDDNSLSVS 94

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQC 138
            + +  K NR    I+   E+G+ ++ P      I R+         +    T+SAA + 
Sbjct: 95  LVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNTVSAAAKQ 154

Query: 139 D----ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----V 190
                I T+  +Y    L   ++        V+      +E   E L  I + P+    +
Sbjct: 155 SRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYSPDNPTRI 214

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            IL+GPEGG    E E L +        LG  ILR+ TA  AA+  +  + G W
Sbjct: 215 YILVGPEGGITEREIE-LFTRAGAHKALLGTEILRASTAGAAALCTINVVLGRW 267


>gi|306829961|ref|ZP_07463148.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427972|gb|EFM31065.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 247

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 18/223 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88
            ++  V+R+KEGD I L      + L+++  V ++ +F++  Q  +   +  VQ   +  
Sbjct: 23  KHMFQVMRLKEGDEITLVFDDGIKRLARVLDV-ETRQFEL-VQELADNVELPVQVTTASG 80

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ    
Sbjct: 81  FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197
            +P +         L  +D    IV A E    E      ++ +  +     V  + GPE
Sbjct: 141 LVPSVKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAALIQAVSGLEKGSKVLFIFGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALV 237
           GG    E ++  +   V    LGPRILR++TA   AV+A++++
Sbjct: 201 GGLSPAEIKSFEAKGAVLA-GLGPRILRAETAPLYAVSALSVL 242


>gi|33861225|ref|NP_892786.1| hypothetical protein PMM0668 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639957|emb|CAE19127.1| Conserved hypothetical protein 46 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 257

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 36/261 (13%)

Query: 7   LKRLFVDFPLCIKTQG---KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           L RLF+     I  +    K + ++  Y+  V+R+K G  I + NG+   W        K
Sbjct: 4   LTRLFMQNERIINNKNNDLKLTNNEARYINKVMRIKIGKEIFITNGEGSLW--------K 55

Query: 64  SIRFKVEYQSRS--------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV--- 112
           +I  +  Y   +        Q K+  +  I   I  N ++ +++   E+G+  I+P+   
Sbjct: 56  AINLEDNYIKINDINNPYLFQEKEKILLGIAVVIPKNGVEDILKMCTEIGIDFIQPLYSD 115

Query: 113 --ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFL--LKNWDHNCQIVF 167
             + +YT N    + R  +    A EQC+ L  P I     L +++  L+N D     V 
Sbjct: 116 RQVKKYT-NFSNKLIRWNSIVNEAVEQCERLWRPSILSGINLFDWINSLENKDIISVSVT 174

Query: 168 ADETCGSENS-LEKLHAIAHIPNVAI--LIGPEGGYHSEEKETL--HSLPFVTPLSLGPR 222
            D++  + N  L+K  ++       +  +IGPEGG+   E E    + + FV    L   
Sbjct: 175 RDDSTDNLNHWLKKKQSVLDKKGGVLWNVIGPEGGWSQGEIEFFIKNKIAFV---KLSES 231

Query: 223 ILRSDTAAVAAMALVQAICGD 243
           ILR+ TA V A +++     D
Sbjct: 232 ILRTSTATVNATSILSQWRND 252


>gi|216263941|ref|ZP_03435935.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
 gi|215979985|gb|EEC20807.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
          Length = 243

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 32/232 (13%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLINVRRLKKGDKLNILL---KDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I  +   ++       NT     R       A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHQSGML-----------LSKNESFDNFSKIG 189

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           I+IGPEG + + E        F T +     +LR+DTA + ++A  + +  D
Sbjct: 190 IIIGPEGCFSNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240


>gi|325955335|ref|YP_004238995.1| ribosomal RNA small subunit methyltransferase E [Weeksella virosa
           DSM 16922]
 gi|323437953|gb|ADX68417.1| Ribosomal RNA small subunit methyltransferase E [Weeksella virosa
           DSM 16922]
          Length = 237

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 21/227 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-----EYQSRSQTKQSD 81
           ++ H+   VLR KEGD + + NG+      +IS + K    KV     E Q   Q K   
Sbjct: 18  EESHHFTKVLRGKEGDIVYITNGEGTLAKCEISQLSKK---KVEANILEIQENFQQKPYY 74

Query: 82  VQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           +    +P KT  RL++ ++K+ E+G+  I  + T +++  +  ++R+     +A +Q   
Sbjct: 75  LHVAIAPTKTMERLEFFLEKATEIGIDEITFLQTFHSERRNIKIERIEKIIQAACKQSLK 134

Query: 141 LTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLE--KLHAIAHIPNVAILIGPE 197
              P +       +F+ +++    +++     C  +   E  K +       + ++IGPE
Sbjct: 135 AYTPKVNSLMKFHDFIDQDYQEFSKVI---AHCRDDWDRENFKTYLSTQPSKIILMIGPE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           G + +EE  +     F   +SLG +  R++TAA+ A+  V     DW
Sbjct: 192 GDFSAEEITSALQKNF-RGVSLGTQRFRTETAALQAVFAV-----DW 232


>gi|224538561|ref|ZP_03679100.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519829|gb|EEF88934.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 244

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRS 75
           I+T+ +   ++  +   VLR+  GD I L +GK   + ++IS     + +   +E   + 
Sbjct: 21  IQTRAELPEEEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISAATNKRCMVNILETIYQE 80

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 81  PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 140

Query: 135 AEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T   +F+ + +     I    E  G +  L+ +       +  +L
Sbjct: 141 IKQSLKARLPQLNEMTDFNKFITQPFKGQKFIAHCYE--GEKPLLKDVFRKGE--DALVL 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           IGPEG +  +E +      F TP+SLG   LR++TAA+ A
Sbjct: 197 IGPEGDFSEKEVQKAIENGF-TPISLGKSRLRTETAALVA 235


>gi|157363096|ref|YP_001469863.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga lettingae TMO]
 gi|157313700|gb|ABV32799.1| protein of unknown function DUF558 [Thermotoga lettingae TMO]
          Length = 226

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 21/230 (9%)

Query: 22  GKASGD----QYHYLAH--VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           GK +GD      H   H  V+R+  G  + + +GK   +  ++  +GK +  K   ++  
Sbjct: 7   GKQTGDFVILDEHESRHLRVIRVSVGQKLFVTDGKGNLYNCELIELGK-LESKAVVRNVE 65

Query: 76  QT---KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI 132
           QT   K S +    +     RL ++++K+VE+G+  +    T+ ++      +++R    
Sbjct: 66  QTEINKLSKITLCIASQNWERLRFLLEKAVELGVDELIIYKTKRSKLYIDKEEKIRLIIR 125

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            AA+Q      P +     + FL    + + + V   ++ G    ++         ++ I
Sbjct: 126 DAAKQSVRYLFPELRIFRDMSFL---QNESMKTVVLHQS-GRAAKIDDFKG-----SLRI 176

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           ++GPEG + SEE   L  +   T L+LG +ILR +TAA+ A  L   + G
Sbjct: 177 VVGPEGDFESEEINQLSQVG--TFLNLGKKILRFETAAILAAGLSSFLNG 224


>gi|229916343|ref|YP_002884989.1| hypothetical protein EAT1b_0613 [Exiguobacterium sp. AT1b]
 gi|229467772|gb|ACQ69544.1| protein of unknown function DUF558 [Exiguobacterium sp. AT1b]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 18/225 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ--SDVQY 84
           D  H++  VLR   G  ++L +G   E+   ++ + K         SR  T +   +V  
Sbjct: 21  DVVHHIGTVLRQGPGYEMVLLDGTGVEYACVVTSLEKKSGEAKVMSSRQATTELPIEVTL 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138
            ++  K ++++ + QK+ E+G+       + R V     +     ++R++     AAEQ 
Sbjct: 81  AYALPKGDKVELVAQKATELGVHHLLLFESTRSVAKWDGKKAPKKVERIQKIMQEAAEQS 140

Query: 139 DILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAI 192
               +P      P  L+  +  +D    +V A E    E       + L  +     V +
Sbjct: 141 YRAVVPTCTYISPKELQQKIDGYDA---VVIAYEESAKEGEQSAFAQLLTQLKPKQRVLV 197

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + GPEGG+   E     +    T  + GPRILRS+TA + A++ +
Sbjct: 198 ITGPEGGFDVNEINQW-TQAGATACAFGPRILRSETAPLYALSAI 241


>gi|118618898|ref|YP_907230.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium ulcerans
           Agy99]
 gi|118571008|gb|ABL05759.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 253

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 35/240 (14%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-Y 84
           GD+  + A V R++ G+ ++L +G            G+  R  VE+ +R       +Q +
Sbjct: 22  GDEGFHAATVRRIRPGEQLVLGDG-----------AGELARCVVEHAARDGLTARVLQRW 70

Query: 85  IFSPI-----------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRV 127
             +P+           K+ R +  ++ + E G  A       R V           + R 
Sbjct: 71  SVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADKGLRRW 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAI 184
           R+   SAA Q     +P +    +   L++      Q   +V A     ++  +E   A+
Sbjct: 131 RSAVRSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVET--AV 188

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           A   ++ +++GPEGG   EE + L     V+ + LGP +LR+ TAA  A+  +  + G W
Sbjct: 189 AQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTSTAAAVALGALGVLTGRW 247


>gi|312864411|ref|ZP_07724644.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415]
 gi|311100132|gb|EFQ58343.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415]
          Length = 248

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 30/240 (12%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQS 73
           PL IK +     D   ++  V+R+K  D + L+F+  DG     I  + + +    +   
Sbjct: 13  PLTIKDK-----DTLKHMFQVMRLKADDKVTLVFD--DG-----IKRLARVLNVDSQTFE 60

Query: 74  RSQTKQSDVQYIFSPI------KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTH 121
             Q  + +V+   S        K ++LD++ QK+ E+G  AI        V+    +   
Sbjct: 61  ILQGLEDNVELPVSVTIASGFPKGDKLDWLTQKATELGADAIWAFPADWSVVKWDGKKLA 120

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
              D++    + AA+Q     LP +      + LLK      +I  A E       L  L
Sbjct: 121 KKEDKLAKIALGAAQQSKRNRLPQVKLFEKKKDLLKQLPDFDKIFLAYEESAKAGELSTL 180

Query: 182 HAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +          +  + GPEGG   +E         + P+ LGPRI+R++TA + A++ V
Sbjct: 181 ASSLRQSQSGDKLLFIFGPEGGISPQELAEFEKSGAI-PVGLGPRIMRAETAPLYALSAV 239


>gi|324994345|gb|EGC26259.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK678]
          Length = 250

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+K GD ++L      + L+++    +     VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSLEIVEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  AI      R V     +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGASAIWAFPADRSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196
             +P I       +FL    D +  IV  +E+     +   + A++ +     V  + GP
Sbjct: 140 NLIPEIRLFDKKADFLAALADFDRIIVAYEESAKEGETAALVRALSGLEAGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           EGG   +E         V+   LGPRILR++TA + A+  V  + 
Sbjct: 200 EGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|325262826|ref|ZP_08129562.1| RNA methyltransferase, RsmE family [Clostridium sp. D5]
 gi|324031920|gb|EGB93199.1| RNA methyltransferase, RsmE family [Clostridium sp. D5]
          Length = 245

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 10/222 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQTKQSDVQ 83
            G   +++ +VLRMK G+   + +G   E+L +I  Y   ++  ++   +    +     
Sbjct: 19  GGPDVNHMKNVLRMKPGEKAEISDGAGIEYLCEIDRYEEDAVILRILSSAGEPAELPSKI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
           ++F  + K+++++ +IQK+VE+G+  I PV T         +      +R  +  +SAA+
Sbjct: 79  FLFQGLPKSDKMELIIQKAVELGVHEIIPVATNRAVVKLDEKKAAKKTERWNSIALSAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSLEKLHAIAHIPNVAILIG 195
           QC    +P +         L+  D    ++   E   G E +   + +I    +V I IG
Sbjct: 139 QCGRSIIPQVAQVKNFGGALEYADGLDVVLIPYELAKGMEETKRIISSIEPGKSVGIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+  EE +    +  + P++LG RILR++TA    ++++
Sbjct: 199 PEGGFEEEEIQKAMGMGAL-PVTLGRRILRTETAGFTILSVL 239


>gi|22538104|ref|NP_688955.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae
           2603V/R]
 gi|25011993|ref|NP_736388.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae
           NEM316]
 gi|76799724|ref|ZP_00781818.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
 gi|77412896|ref|ZP_00789100.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           515]
 gi|22535010|gb|AAN00828.1|AE014280_20 conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           2603V/R]
 gi|24413536|emb|CAD47614.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76584921|gb|EAO61585.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
 gi|77161036|gb|EAO72143.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           515]
          Length = 246

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 23/227 (10%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85
           D   ++ +V+R+ E D ++L      + L+K+  V  S  RF++  +      +  VQ  
Sbjct: 20  DTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKV--VDSSAHRFQI-LEELDNNVEMPVQVT 76

Query: 86  FSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQ 137
            +    K ++LD++ QK+ E+G  AI        V+    +      D++    + AAEQ
Sbjct: 77  IASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQ 136

Query: 138 CDILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNV 190
                LP           +  L  +D   +I  A E    E  L    + L  +     +
Sbjct: 137 SKRNRLPQVRLFEKKADFQAELAGFD---KIFIAYEESAKEGELSALAQNLQTVKAGDKL 193

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             + GPEGG   +E      +  +  + LGPRI+R++TA + A++++
Sbjct: 194 LFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 239


>gi|307709666|ref|ZP_07646118.1| RNA methyltransferase family protein [Streptococcus mitis SK564]
 gi|307619564|gb|EFN98688.1| RNA methyltransferase family protein [Streptococcus mitis SK564]
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G        A+  V     +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPAVWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNMV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L  +D    IV A E    E     L  A+A +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAALLQAVAGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243


>gi|300741540|ref|ZP_07071561.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567]
 gi|300380725|gb|EFJ77287.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567]
          Length = 255

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 17/234 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQ 83
           +G + H+ A V R+  G+N+ L +G+ G  +  I     S   +V  Q+  +   S  V 
Sbjct: 25  TGPEAHH-AKVKRLAIGENLDLADGQ-GHRIHGIVSAISSKGLEVTVQNLDKDDNSLSVS 82

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQC 138
            + +  K NR    I+   E+G+ ++ P      I R+         +    T+SAA + 
Sbjct: 83  LVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNTVSAAAKQ 142

Query: 139 D----ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----V 190
                I T+  +Y    L   ++        V+      +E   E L  I + P+    +
Sbjct: 143 SRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYSPDNPTRI 202

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            IL+GPEGG    E E L +        LG  ILR+ TA  AA+  +  + G W
Sbjct: 203 YILVGPEGGITEREIE-LFTRAGAHKALLGTEILRASTAGAAALCTINVVLGRW 255


>gi|313683427|ref|YP_004061165.1| hypothetical protein Sulku_2305 [Sulfuricurvum kujiense DSM 16994]
 gi|313156287|gb|ADR34965.1| protein of unknown function DUF558 [Sulfuricurvum kujiense DSM
           16994]
          Length = 222

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 20/214 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKD---GEWLSKISYV-GKSIRFKVEYQSRSQTKQS 80
           SGD Y YL  V R K GD ++ F  ++    E+  ++    G+   F ++    + ++ +
Sbjct: 17  SGDDYKYLIKVRRHKAGD-LIAFRSRERLSEEYRYRLERTDGRCAYFSLQSHHHAPSESN 75

Query: 81  DVQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
              +I +  +    ++  +    E+G+  I  +  R + QN   + +R +    S+  QC
Sbjct: 76  HRLHIGWCLVDPKTIEKTLPMLTELGVSKITFIHCRRSQQNFRLDFERYKRIMESSIMQC 135

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              +L  +     +   LK  +    + F  E  GS+ S+E            ++IG EG
Sbjct: 136 GRTSLIELSESPNMSTFLKEHNDAVVLDFGGEVLGSDESIE-----------TVVIGCEG 184

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           G+   E++   +      L   P ILRS+TAAVA
Sbjct: 185 GFDESERKVFSN--HRIRLFPSPMILRSETAAVA 216


>gi|330998339|ref|ZP_08322163.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT
           11841]
 gi|329568445|gb|EGG50250.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT
           11841]
          Length = 254

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 30/236 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQ 83
            D+  +   VLR++ GD I L +GK   + ++I+   GK   FKV E     +     + 
Sbjct: 20  ADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLFKVLEAVPHPKEWSGHLH 79

Query: 84  YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K  +R++++ +K+ E+G   +  +  RY++      +R+    +SA +Q     
Sbjct: 80  LALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTERIDKILVSAMKQSHKAR 139

Query: 143 LPFI-----------YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK---------LH 182
            P +            P    +F+   +D       AD    ++ S +K         L 
Sbjct: 140 KPLLNGMEDFKRFVDRPFAGQKFIAHCYDE------ADVAGVAKASEDKAMDGGKPFLLD 193

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +    +  +L+GPEG +   E     +  F + +SLG   LR++TA + A+ L+ 
Sbjct: 194 ELDTGQDALVLVGPEGDFSINEVRLAQAHGFRS-VSLGRSRLRTETAGLVAVHLMH 248


>gi|288904368|ref|YP_003429589.1| hypothetical protein GALLO_0147 [Streptococcus gallolyticus UCN34]
 gi|306830400|ref|ZP_07463570.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977364|ref|YP_004287080.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731093|emb|CBI12639.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304427425|gb|EFM30527.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177292|emb|CBZ47336.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 247

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQYI 85
           D   ++ +V+R+ E D ++L      + L+K+    +  RF++  +  S  +   +V   
Sbjct: 20  DTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEH-RFEIIEELDSNVELPVEVTIA 78

Query: 86  FSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
               K ++L+++ QK  E+GM       A   V+    +      D++   T+ AAEQ  
Sbjct: 79  AGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKLAKKADKLAKITLGAAEQSK 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195
             ++P +         L   +   +I  A E    E        +L  +     +  + G
Sbjct: 139 RNSIPEVTLFEKKAAFLAELEQFDRIFIAYEESAKEGETAVLARELSQMKAGEKILFIFG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG   EE ET  S   +  + LGPRI+R++TA + A+A V
Sbjct: 199 PEGGISPEEIETFESKGGLK-IGLGPRIMRAETAPLYALASV 239


>gi|304385087|ref|ZP_07367433.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|304329281|gb|EFL96501.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 245

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 19/236 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  L ++ +   S    H+L  V+R + G+ I +       WLS++        
Sbjct: 1   MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQRVWLSQLLDNAAPAS 60

Query: 67  FK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            K V+  ++S     +V       K ++ + +I++  EMG    +    RY+      + 
Sbjct: 61  LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + R      +AAEQ     +P +   +  + +     H    + A E    E    
Sbjct: 121 IDRKLQRFEEIAKAAAEQSHRQMIPTVEIISFADLVNSPVQHR---MVAYEESAKEGEFA 177

Query: 180 KLHAIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +  + N A       + GPEGG   EE ++ +   F T   LGPRILR+++A
Sbjct: 178 NFKRV--LSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESA 230


>gi|224534422|ref|ZP_03675000.1| conserved hypothetical protein [Borrelia spielmanii A14S]
 gi|224514524|gb|EEF84840.1| conserved hypothetical protein [Borrelia spielmanii A14S]
          Length = 243

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 42/237 (17%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E  +S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLVNVRRLKKGDKLNILL---KDKELRVSEIVNIGSNFIKFATNKIDKIEKNNFEISM 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTIS-----AAEQC 138
             S +K  ++D ++++ VE+G+  I  +   ++      N    +T   S     A +Q 
Sbjct: 81  FISSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   +           +L K     +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHQSGV-----------TLSKNENFDNFSKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           I+IGPEG + + E     ++  + + F TP      +LR+DTA + ++A  + +  D
Sbjct: 190 IIIGPEGCFSNSEIAFFKEKGFNFVRFNTP------VLRADTAIIYSLACFKVLLED 240


>gi|258508566|ref|YP_003171317.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148493|emb|CAR87466.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259649873|dbj|BAI42035.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 242

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
           V+ +    K ++ ++++QK+ E+G   I     ++       +     MDR+ T   +AA
Sbjct: 76  VEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHA-IAHIPNVAI 192
           EQ        + P  T+   L +   D   ++V  +E+         + A + H  ++ +
Sbjct: 136 EQSH----RNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVSALVPHPASLCV 191

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           + GPEGG    E   L +  F TP  LGPRILR++TA
Sbjct: 192 VFGPEGGISPAELALLQARGF-TPAGLGPRILRTETA 227


>gi|241890108|ref|ZP_04777406.1| ribosomal RNA small subunit methyltransferase E [Gemella
           haemolysans ATCC 10379]
 gi|241863730|gb|EER68114.1| ribosomal RNA small subunit methyltransferase E [Gemella
           haemolysans ATCC 10379]
          Length = 249

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 105/236 (44%), Gaps = 15/236 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64
           +++ F++  L +++  + S D  +++  ++R K  D + +    + +++  I  + V K 
Sbjct: 1   MQQYFINEDLNVESTYELSKDDSNHIVRIMRKKIEDKVYVVFNNEIKYICTIVDNNVDKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +    E    +    + +     P+K ++++Y++QK  E+G+  I      R +      
Sbjct: 61  LITPYEQVIGTNELSTKITVAIPPLKNDKIEYLMQKLTELGVSNIVLFNSERNIAKIKKD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSE 175
                ++R       AAEQ     +P I    +L+ L+   + +D    + +  E+   E
Sbjct: 121 KVDSKLNRWNKIVKEAAEQSKRNVIPDITYVDSLKDLIVFSEKFDSKV-VAYEKESVNEE 179

Query: 176 NSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           N   K  LH+      V  + G EGG   +E + L    F   + LG RILR++TA
Sbjct: 180 NINLKNLLHSDLSNKEVIAVFGSEGGLSEQEVDFLTENKF-DVIGLGKRILRAETA 234


>gi|163781828|ref|ZP_02176828.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883048|gb|EDP76552.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 233

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVIT----RYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
           I+    + ++QK+ E+G   + P+IT    R  +     MDR +  +  A +Q       
Sbjct: 81  IELKTFETIVQKATELGAAELVPLITERSFRRREVILKKMDRWKKVSKEAMKQSGRTYEL 140

Query: 145 FIYPPTTLEFLLKNWDHNCQI--VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
            I  P  LE L    D N  +   +  +  GS         ++ + +V++++GPEGG+  
Sbjct: 141 SIREPALLEDLEPTSDLNILLDNFYEGKPIGS-------LELSSVESVSVVVGPEGGFRR 193

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           EE E L S  F++ + L P +LR+DTAA   + ++  + G 
Sbjct: 194 EEGEHLRSKGFLS-VKLEPHVLRADTAATVGVGIIMNLAGS 233


>gi|289705009|ref|ZP_06501422.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58]
 gi|289558268|gb|EFD51546.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58]
          Length = 253

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
            G +  + A  +R+  G+ ++L +G      G  L+     G S+R     +  + T   
Sbjct: 25  GGPEARHAAAAMRLAPGEAVILADGSGTLGHGTVLAAAPD-GVSVRLDAVAEEPAPTPA- 82

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAA 135
            +  + +  K +R    +Q +VE+G+ A+ P      I R+         +    T  AA
Sbjct: 83  -LVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWADTARAA 141

Query: 136 EQCDILT-LPFI---YPPTTLEFLLKNWDHNCQIVFA---DETCG-SENSLEKLHAIAHI 187
            +      +P +      T +  L+++ D   ++V     D   G S    E+L A A I
Sbjct: 142 AKQARRARVPAVRDHVSGTAVAGLVRD-DDGGRLVLVLHEDAERGVSSVPTERLSAAAEI 200

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              A+++GPEGG    E E   +   V P+ LGP +LR+ TA  AA+A++Q   G W
Sbjct: 201 ---AVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253


>gi|199599340|ref|ZP_03212738.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001]
 gi|199589779|gb|EDY97887.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001]
          Length = 242

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
           V+ +    K ++ ++++QK+ E+G   I     ++       +     MDR+ T   +AA
Sbjct: 76  VEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHA-IAHIPNVAI 192
           EQ        + P  T+   L +   D   ++V  +E+         + A + H  ++ +
Sbjct: 136 EQSH----RNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVSALVPHPASLCV 191

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           + GPEGG    E   L +  F TP  LGPRILR++TA
Sbjct: 192 VFGPEGGISPAELALLQARGF-TPAGLGPRILRTETA 227


>gi|323340773|ref|ZP_08081025.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323091896|gb|EFZ34516.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 250

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 15/219 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S D Y +   V+RMK G    L        + ++  +  + +  V ++      Q ++  
Sbjct: 18  SEDVYKHAVVVMRMKAGSKFELVTPDKVVHVMELVTIDSAKKQAVAHECERFEHQVELPV 77

Query: 85  IFSPI----KTNRLDYMIQKSVEMGMGAIRPV-----ITRYT-QNTHYNMDRVRTYTISA 134
             + +    K ++ D ++ K+ E+G+  I        + R+  Q     ++R++    SA
Sbjct: 78  EATIVCGLPKNDKTDLIVMKATELGVSKIVFFAGDWSVARWAKQKQAKKLERLQKIAKSA 137

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAI---AHIPNV 190
           AEQ    T+P +     LE LL + D      + +    G +  L K+  +        V
Sbjct: 138 AEQSHRTTIPEVSYLDGLEDLLPDEDTVGLCAYEESAKAGEKGMLVKVFDVLKTGEKKKV 197

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + GPEGG   +E E L    F +   LGPRI+R++TA
Sbjct: 198 TAVFGPEGGISPKEVELLKKKGF-SFAGLGPRIMRAETA 235


>gi|281420413|ref|ZP_06251412.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205]
 gi|281405558|gb|EFB36238.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205]
          Length = 251

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 109/234 (46%), Gaps = 20/234 (8%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQT 77
           TQ +   ++  +   VLR++ GD + L +GK   + +++S    K   ++V E   +   
Sbjct: 14  TQTELPQEEATHALRVLRIQTGDELFLMDGKGVFYRAEVSLATNKRCIYEVKEVMPQQPA 73

Query: 78  KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
            +  +    +P K  +R+++M +K+ E+G   I  +  ++++     +DR+    +SA +
Sbjct: 74  WRGHIHLAIAPTKMMDRIEWMAEKATEIGFDEISFLNCKFSERKVIRIDRIDKIVVSAVK 133

Query: 137 QCDILTLPFI-----------YPPTTLEFLLKNWDH-NCQIVFAD--ETCGSENSLEKLH 182
           Q      P +            P    +F+   ++    +  FA+  ++C +++S     
Sbjct: 134 QSHKAWKPVVNELQNFKDFITAPRNGRKFICHCYEEIEKKDFFAEISKSCPADDSAGA-- 191

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           A     ++ +L+GPEG +  +E        + + +SLG   LR++TA + A+ +
Sbjct: 192 AQEGTDDITVLVGPEGDFSIDEVRLALENGYES-VSLGTSRLRTETAGLVAVNM 244


>gi|329956990|ref|ZP_08297558.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056]
 gi|328523747|gb|EGF50839.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056]
          Length = 232

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91
            VLR++ GD + L +GK   + ++IS     + +   +E   ++      +    +P K 
Sbjct: 25  RVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNILETTPQAPLWSGYLHIAMAPTKN 84

Query: 92  -NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
            +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q     LP +   T
Sbjct: 85  MDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSAIKQSLKARLPRLNEMT 144

Query: 151 TL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
              +F+ ++++    I    E  G +  L+ +  +    +  +LIGPEG +  EE +   
Sbjct: 145 DFNKFISQSFNGRKFIAHCYE--GEKPLLKDI--VRKGEDALVLIGPEGDFSEEEVKKAI 200

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237
              F  P+SLG   LR++TAA+ A  +V
Sbjct: 201 ENGF-EPISLGRSRLRTETAALVACHIV 227


>gi|226227302|ref|YP_002761408.1| hypothetical protein GAU_1896 [Gemmatimonas aurantiaca T-27]
 gi|226090493|dbj|BAH38938.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 240

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 13/202 (6%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK-TN 92
            VLR++ G  I + NG+      ++  + K+ +  VE             ++  P+   +
Sbjct: 23  RVLRLEAGAMIGVRNGQGSIGAGQLVRLSKT-QAHVEITEAVSVSPLPAVHLLVPVADRD 81

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD------RVRTYTISAAEQCDILTLPFI 146
           R+ ++ +K+ E+G  + RPV+ R +++     +      +VR     A  Q +   LP  
Sbjct: 82  RMLWLAEKAAELGATSWRPVLWRRSRSVSPRGEGVNFQAKVRARMEGALAQSEGAWLPQP 141

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
           +P   LE  +       +IV   +    E     L A    P V I +GPEGG  ++E  
Sbjct: 142 FPEANLERAVLAAPAGRRIVLDPD---GEPLTGALGAPLTAP-VVIAVGPEGGLEADEIA 197

Query: 207 TLHSLPFVTPLSLGPRILRSDT 228
            L    F    SLGP ILR +T
Sbjct: 198 DLEQAGFQR-RSLGPTILRFET 218


>gi|224024059|ref|ZP_03642425.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM
           18228]
 gi|224017281|gb|EEF75293.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM
           18228]
          Length = 232

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 9/212 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQSDVQY 84
           ++  +   VLR+  GD ++L +GK   + + IS    K  + K+ E   +    +  +  
Sbjct: 18  EEAGHCLRVLRLGMGDEVMLTDGKGCFYKAVISAATNKRCQVKILETIPQEPFWKGHLHL 77

Query: 85  IFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
             +P K  +R++++ +K+ E+G   +  +  R+++      +RV    +SA +Q      
Sbjct: 78  ALAPTKNMDRIEWLAEKATEIGFDELSFLNCRFSERKVIKTERVEKIVVSAVKQSLKARK 137

Query: 144 PFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           P +   T  ++F+ +++     I    E    E  L K   +    +  +LIGPEG +  
Sbjct: 138 PVVNEMTDFMKFMERDFPGQKFIAHCYE---GEKPLLK-DVLVPGEDALVLIGPEGDFSP 193

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           EE        F   +SLG   LR++TAA+ A+
Sbjct: 194 EEVARAEEKGF-HAVSLGKSRLRTETAALVAV 224


>gi|213417363|ref|ZP_03350505.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 182

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV---EYQSRS 75
           TQ     D  +++  VLRM  G  + LF+G +  + ++I S   KS+  +V   E   R 
Sbjct: 32  TQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRE 91

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRV--RT 129
                 +  + S  +  ++++ IQKS+E+G+  I P+ +        N   N  R   + 
Sbjct: 92  SPLHIHLGQVMS--RGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERLNKKRQQWQK 149

Query: 130 YTISAAEQCDILTLPFIYPPTTLE 153
             I+A EQC    +P I PP  L+
Sbjct: 150 IAIAACEQCGRNRVPEIRPPMALK 173


>gi|108800424|ref|YP_640621.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. MCS]
 gi|119869553|ref|YP_939505.1| hypothetical protein Mkms_3521 [Mycobacterium sp. KMS]
 gi|108770843|gb|ABG09565.1| protein of unknown function DUF558 [Mycobacterium sp. MCS]
 gi|119695642|gb|ABL92715.1| protein of unknown function DUF558 [Mycobacterium sp. KMS]
          Length = 248

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 18/232 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           GD   +  +V R + G+++ L +G        +  VGK        + R+ T  +    +
Sbjct: 21  GDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTARVLERRTVTPPAPAVTV 80

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY--TQNTHYNMDRVRTYTISAAEQ 137
              I K++R +  ++ + E G  A+        + R+         + R R    SAA Q
Sbjct: 81  VQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAGKVDKGLRRWRAVVRSAARQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
                +P +    T   L++       D    +V  +   G    ++   A A    V +
Sbjct: 141 SRRAHIPPVDGVVTTAELVRRVTAEVADGATVLVLHESATGPLTGVDLTQARA----VTL 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG   EE + L +   V  + LGP +LR+ TAA   +  +  +   W
Sbjct: 197 IVGPEGGIADEELDALTAAGAVA-VRLGPTVLRTSTAAAVGLGALGVLTPRW 247


>gi|303229102|ref|ZP_07315904.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516226|gb|EFL58166.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 243

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 40/254 (15%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +K++F+  PL          D  H++ HV R     NI             I+  G   R
Sbjct: 1   MKKIFIPTPL--DESIVLPKDVTHHILHVFR----HNIE----------KPITVTGSDNR 44

Query: 67  ---FKVEYQSRSQTKQSDVQYIFSP------------IKTNRLDYMIQKSVEMGMGAIRP 111
              +++  +     + S ++YI SP            +K  +L++++QK+ E+ +  +  
Sbjct: 45  CGIYQINDEINGLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYL 104

Query: 112 V-----ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI 165
           V     + +Y  +       R     + A++QC    LP +     L  +L     + ++
Sbjct: 105 VPTSNCVAKYDAKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVGEPLSNVLDIESESLKL 164

Query: 166 VFADETCGS--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
           V  +   G   +++L+ +++ +   ++ I IGPEGG+  +E   +      + ++LG  I
Sbjct: 165 VAYENEAGYTIKDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGGQS-VTLGHTI 223

Query: 224 LRSDTAAVAAMALV 237
           LR++TAA+AA+++V
Sbjct: 224 LRAETAAIAALSMV 237


>gi|317052435|ref|YP_004113551.1| hypothetical protein Selin_2275 [Desulfurispirillum indicum S5]
 gi|316947519|gb|ADU66995.1| protein of unknown function DUF558 [Desulfurispirillum indicum S5]
          Length = 243

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 29/251 (11%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----S 64
             +D  L  +   +  G+ +H+L  VLR   GD + + +     +  +I+ +       S
Sbjct: 3   FLIDQALIGQDSCRIEGEDFHHLRRVLRKNIGDPVDILSTGKVRYRGRITAMADDSAAIS 62

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT---------R 115
           +   + +++ S  +   +    + IK +     ++   E+G   I   ++         +
Sbjct: 63  LSDPIAHETESSLQ---LTIACAAIKGDAFFDNVRMFCELGAHRIVVFVSENCVVQYDEK 119

Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFLLKN--WDHNCQIVFADETC 172
             Q     M R+    ++ + + ++ T P  I P TT E LL +  W    +I+  +   
Sbjct: 120 RAQRKREKMQRI----VNESCKQNLRTCPPAIDPLTTFEQLLSDDQWLPRQKILCYE--- 172

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           G+   +  L      P + ++IGPEGG    E +    +  +  +SLGPRIL++ TA VA
Sbjct: 173 GAREPIASLSIDTGQP-LLLMIGPEGGISQREAQKAR-MCGIQMVSLGPRILKASTAQVA 230

Query: 233 AMALVQAICGD 243
           A+++VQ   GD
Sbjct: 231 ALSIVQHRFGD 241


>gi|229552377|ref|ZP_04441102.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539747|ref|YP_003174246.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314243|gb|EEN80216.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151423|emb|CAR90395.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 242

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
           V+ +    K ++ ++++QK+ E+G   I     ++       +     MDR+ T   +AA
Sbjct: 76  VEVVCGVSKGDKTEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHA-IAHIPNVAI 192
           EQ        + P  T+   L +   D   ++V  +E+         + A + H  ++ +
Sbjct: 136 EQSH----RNLVPEVTMYAKLSDVGDDAAVKLVAYEESAKKGEHAALVSALVPHPASLCV 191

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           + GPEGG    E   L +  F TP  LGPRILR++TA
Sbjct: 192 VFGPEGGISPAELALLQARGF-TPAGLGPRILRTETA 227


>gi|218961073|ref|YP_001740848.1| hypothetical protein CLOAM0759 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729730|emb|CAO80642.1| conserved hypothetical protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 233

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           G+++H+L +V R   G+ + L +G       K++ + K S   ++         +     
Sbjct: 20  GEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNSAVIEIIKIETFPFPERPFAI 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQCDILT 142
            F+ IK    + +I+K  E+G+ A  P++T Y+    +     R +   ++A +QCD   
Sbjct: 80  AFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVRIPSKNTTQRFKRTALAAIKQCDNPW 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP I  P + +  ++       I      C  +   +K+ A+ +      +IGPEGG+  
Sbjct: 140 LPRINEPLSFKQAIEKIISEGWIPV---LCSEKRPAKKISALPNNIKPCFIIGPEGGFSE 196

Query: 203 EE 204
            E
Sbjct: 197 AE 198


>gi|239979382|ref|ZP_04701906.1| 16S rRNA m3U1498 methyltransferase [Streptomyces albus J1074]
 gi|291451257|ref|ZP_06590647.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074]
 gi|291354206|gb|EFE81108.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074]
          Length = 243

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 32/237 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSIRFKVEYQSRSQ-TKQSDVQ 83
           G +  +   V R+  G+ ++L +G   G + + +S  GKS  +    + R +   +  + 
Sbjct: 20  GPEGRHAVSVRRLNPGEPVVLTDGAGRGAFGTVVSAEGKSTLYVAVDEVREEPAPRPRIT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
            + +  K +R +  ++   E G+ AI P      IT++  +    ++ + R     A +Q
Sbjct: 80  VVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGERGLKSLGKWRATAREAGKQ 139

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-------AIAHIP-- 188
              L  P +  P           H+ + V A    G  +    LH       A A +P  
Sbjct: 140 SRRLRFPEVADP-----------HSTRQVAA--LLGGADFAAVLHEEGSAPLARAALPEE 186

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            ++ +++GPEGG  SEE              LGP +LR+ TA  A +AL+    G W
Sbjct: 187 GSIVLVVGPEGGVSSEELAAFGEAGAGA-FRLGPSVLRTSTAGTAGVALLLGRTGRW 242


>gi|327472984|gb|EGF18411.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK408]
          Length = 250

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 13/226 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KE + + L      + L+++   G+     +E  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEDEQVTLVFDDGMKRLARVLDPGQQSLEILEEMADNTELPVRVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G GA+      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGAGALWAFPADWSVAKWDSKKLAKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIG 195
             +P +  +   T +FL    D +  IV  +E+     +   + A++ +     V  + G
Sbjct: 140 NLIPEVRLFDKKT-DFLATLADFDRIIVAYEESAKEGETAALVRALSGLETGAKVLFIFG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           PEGG  S+E         V+   LGPRILR++TA + A+  V  + 
Sbjct: 199 PEGGLSSDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|149918557|ref|ZP_01907046.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1]
 gi|149820633|gb|EDM80045.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1]
          Length = 241

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 24/223 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS---IRFKVEYQSRSQTKQSD 81
           GD+ HYLA V R + GD++ +  G  G+ W +++  + +    +                
Sbjct: 23  GDESHYLAKVRRARVGDSVEVLGGAAGQAWSARVVALERRAARVLLLAPLPPPQPPPPLR 82

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR--YTQNTHYNMDRVRTYTISAAEQCD 139
           +  +  P     LD +   S     GA R  + R   +Q    +  RV     +A  QC 
Sbjct: 83  LVLLGMPDAPAVLDSL---SAASEAGATRLALVRCARSQGRGPSPARVARVLRAAQRQCG 139

Query: 140 ---ILTLPFIYPPTTLEFLLKNWDHNCQ----IVFADETCGSENSLEKLHAIAHIPNVAI 192
               L +  +  P TLE  L   +H+ +    + +A        S   L A A  P   +
Sbjct: 140 RRLALVVEGLEQPWTLERAL---EHHAEWPGHVAWARGR--GRPSAADLDAPA--PGRRL 192

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L+GPEGG    E        F   LSLGP +LR+ TA VA +A
Sbjct: 193 LVGPEGGLTDGEVTLAMDAGFQM-LSLGPWVLRTPTAVVAGLA 234


>gi|317484787|ref|ZP_07943685.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316923969|gb|EFV45157.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 260

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 23/224 (10%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKI---SYVGKSIRFKVEYQSRSQTKQSDVQY 84
           + H+L  VLR++EG+++ + +G+  E   ++       K++  ++  +      +S V  
Sbjct: 35  ESHHLTRVLRIREGEDVRVLDGRGREGRFRVLPYKKNAKAVALRLLDEWTYPEPESKVIL 94

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIR---------PVITRYTQNTHYNMDRVRTYTISAA 135
                K  R  ++++K+VE     I          PV +   ++    +        + A
Sbjct: 95  AAGWTKAARRGWILEKAVEFEASGIWLWQAERSQFPVPSDIKESWQGQL-------AAGA 147

Query: 136 EQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI- 192
           +QC    LP +   P    E +    +  C+        G ++ +         P   + 
Sbjct: 148 KQCRNPWLPELRTMPGGVDELIALAEELGCEHRHVLVESGHKSVMSLTPDTLGQPGRTLC 207

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           ++GPEGG+ ++E E L    F+ P +LG R+LR +TAAV  + L
Sbjct: 208 VVGPEGGFTAQEVEKLTRAGFL-PATLGERVLRWETAAVLCLGL 250


>gi|289167412|ref|YP_003445681.1| hypothetical protein smi_0564 [Streptococcus mitis B6]
 gi|288906979|emb|CBJ21813.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 247

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNVV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199
           P +         L  +D    I+ A E    E      L+ +  +A    +  + GPEGG
Sbjct: 143 PSVKLFEKKADFLAQFDQFDSIIVAYEESAKEGEVAVLLQAVTGLAKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243


>gi|254556845|ref|YP_003063262.1| hypothetical protein JDM1_1678 [Lactobacillus plantarum JDM1]
 gi|254045772|gb|ACT62565.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
          Length = 250

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHY-NMDRVRTYTISAAEQCDILTL 143
           K ++ + ++Q+  E+G  A      +  + ++  N     + R+      AAEQ     +
Sbjct: 88  KGDKPEQIVQRGTELGASAFVFFDSQWAVAKWAANKRARKLARLAKIAQGAAEQSHRTMI 147

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAILIGPEGGY 200
           P +   T L  LL +  ++  +V  +E+     S   ++ L  +     +  + GPEGG 
Sbjct: 148 PSVSYATDLNQLLAHVSYDTGVVAWEESAKQGESSQLVQTLKTMTAPQRLLAIFGPEGGL 207

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +E  TL +   +T   LGPRI+R++TA +  ++ V   C
Sbjct: 208 APQEVATLQT-AGITAAGLGPRIMRAETAPLYLLSSVSFWC 247


>gi|153807645|ref|ZP_01960313.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185]
 gi|149130007|gb|EDM21219.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185]
          Length = 233

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 9/211 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SDVQ 83
           ++  +   VLR+  GD I L +GK   + ++I+    + R  V  +     K      + 
Sbjct: 18  EEAQHCTRVLRLSIGDEITLTDGKGSFYKAEIT-AATNKRCLVAIKETIFQKPLWPCHLH 76

Query: 84  YIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
              +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA +Q     
Sbjct: 77  IAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKNERIEKILISAIKQSLKAR 136

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP +   T     + N +   Q   A    G +  L+ +       +  +LIGPEG +  
Sbjct: 137 LPKLNEMTDFNKFI-NQEFKGQKFIAHCYEGEKPLLKDVLKAGE--DALVLIGPEGDFSE 193

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            E E      F TP+SLG   LR++TAA+ A
Sbjct: 194 GEVEKAIERGF-TPISLGKSRLRTETAALVA 223


>gi|323483784|ref|ZP_08089163.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323402869|gb|EGA95188.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 245

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 109/220 (49%), Gaps = 10/220 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ +L+     G++L     + +  I F +  +S S+ +     
Sbjct: 19  TGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKILFGILEKSESEMELPARI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
           ++F  + K ++++ +IQK+VE+G   I PV T+       ++     + R    + SAA+
Sbjct: 79  HLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSKKEEARIKRWNAISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +      +  L+   D   +++  +   G E +   L       ++AI IG
Sbjct: 139 QSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEETRRLLQTAEAGMDIAIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           PEGG+  EE         V+P+SLG RILR++TA +  ++
Sbjct: 199 PEGGFEEEEIRQAGERG-VSPVSLGRRILRTETAGLCVLS 237


>gi|157150621|ref|YP_001451092.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075415|gb|ABV10098.1| conserved hypothetical protein TIGR00046 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 247

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 19/229 (8%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84
           D   ++  V+R+KE D + L+F+  DG  + +++ V  S +  +E  +  +   +  V+ 
Sbjct: 20  DTAKHMFSVMRLKEDDQVTLVFD--DG--VKRLARVLDSSQQSLEILEELADNSELPVRV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    K ++L+++ QK+ E+G  AI      ++      +      +++      AAE
Sbjct: 76  TIASGFPKGDKLEFIAQKATELGASAIWGFPADWSVAKWDGKKLDKKTEKLEKIAQGAAE 135

Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAI 192
           Q     +P +       +FL +    +  +V  +E+     S   +  L  +A    V  
Sbjct: 136 QSKRNLIPEVRLFDKKADFLAQLAQFDTIVVAYEESAKEGESAALVRALSGLAAGAKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           + GPEGG   +E +  H    V+   LGPRILR++TA +  +  V  + 
Sbjct: 196 IFGPEGGLSPDEIDAFHQAGAVSA-GLGPRILRAETAPLYVLTAVSVLS 243


>gi|319745949|gb|EFV98232.1| RsmE family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 246

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 21/226 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85
           D   ++ +V+R+ E D ++L      + L+K+  V  S  RF++  +  S  +      I
Sbjct: 20  DTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKV--VDSSAHRFQILEELDSNVEMPVQVTI 77

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
            S   K ++LD + QK+ E+G  AI        V+    +      D++    + AAEQ 
Sbjct: 78  ASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQS 137

Query: 139 DILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVA 191
               LP           +  L  +D   +I  A E    E  +    + L  +     + 
Sbjct: 138 KRNRLPQVRLFEKKADFQAELNGFD---KIFIAYEESAKEGEMSALAQNLQTVKAGDKLL 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + GPEGG   +E      +  +  + LGPRI+R++TA + A++++
Sbjct: 195 FIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 239


>gi|28493248|ref|NP_787409.1| 16S ribosomal RNA methyltransferase RsmE [Tropheryma whipplei str.
           Twist]
 gi|28572640|ref|NP_789420.1| hypothetical protein TW491 [Tropheryma whipplei TW08/27]
 gi|28410772|emb|CAD67158.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476289|gb|AAO44378.1| unknown [Tropheryma whipplei str. Twist]
          Length = 235

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 14/153 (9%)

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS--AAEQCDILTLPFIYPPTTL 152
           +  ++ +VE+G+  I P    +  +  +N    R  +I+  AA+Q      P +      
Sbjct: 94  ESAVRSAVELGVDRIVP----WKSDRSFNSSSRRWSSIAREAAKQSRRAWFPVVKADIPS 149

Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
           E L++    +  I+      GS   L  L +      +V +LIGPEGG   EE   + ++
Sbjct: 150 ERLVEEIGDSLAIILDP---GSNTRLSSLGNLFLQRKSVFLLIGPEGGITREE---ISTI 203

Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P +   SLG   L+S TA+VAA++LV    G W
Sbjct: 204 PGIC-CSLGIETLKSSTASVAALSLVNFFLGRW 235


>gi|315186740|gb|EFU20498.1| protein of unknown function DUF558 [Spirochaeta thermophila DSM
           6578]
          Length = 235

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 28/232 (12%)

Query: 26  GDQ-YHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKS-IRFKVEYQS--RSQTKQ 79
           GD+ Y +L  VLR++EG+   + +  G+ GE   ++  V +  +R    +          
Sbjct: 18  GDRRYEHLVSVLRVREGEVVRVGVLGGRMGE--GRVEEVAREEVRLSCTFDRDPPPPLPV 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI-------TRYTQNTHYNMDRVRTYTI 132
           + +     PI   RL   +       +G  R V+         Y ++T +         I
Sbjct: 76  TLLVAAVRPIVGRRLLRDLSA-----LGLERVVVFPARLSERSYLESTLWKEGGWERSLI 130

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
             AEQ     +P +    +LE  ++      + V  DE  G      +   +       +
Sbjct: 131 EGAEQGVTTRVPEVVRVRSLEEGVRMCGDGVRYV-CDEAAG------QGEGVVRGARYVV 183

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +GPE G+  EE+  L    FV  LSLGPR+LR++ A   A+  V    G W
Sbjct: 184 AVGPERGWTDEERRVLEREGFVR-LSLGPRMLRTEVACHVALGRVAEGAGWW 234


>gi|187918227|ref|YP_001883790.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia hermsii DAH]
 gi|119861075|gb|AAX16870.1| hypothetical cytosolic protein [Borrelia hermsii DAH]
          Length = 242

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 33/224 (14%)

Query: 29  YHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           YHYL  V R+K GD + +L  G++  +   I      IR       + +T+  ++    S
Sbjct: 24  YHYLVDVRRVKLGDTLNVLLRGREIRFAEIIGINNNLIRLSTLKIEKLKTRDFEISMFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDIL 141
            +K  +LD  +++ VE+G+  I  V     + R    +  +   R       A +Q    
Sbjct: 84  NLKGRKLDLSLRQIVEIGVDQINIVNADNSVARIEMDDLKFKSSRFAKLIDEALKQSGNT 143

Query: 142 TLPFI----------YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
            +P I          Y P+   ++     H   ++    +CG++        I+    + 
Sbjct: 144 QVPSINFYRNFFSIPYSPSVSYYVA----HKDGVLL---SCGND--------ISASGKIG 188

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           ILIGPEG +   E +    L F   +     ILR+DTA V ++ 
Sbjct: 189 ILIGPEGCFSKSEIDFFKKLNF-QFVRFNTPILRADTAIVYSLV 231


>gi|120602447|ref|YP_966847.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris
           DP4]
 gi|120562676|gb|ABM28420.1| protein of unknown function DUF558 [Desulfovibrio vulgaris DP4]
          Length = 249

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 12/219 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ----S 80
           +G +  +L  V+R+  GD I L +G   E + +++   ++I   VE    S T      S
Sbjct: 18  TGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNI---VELTPESITTHPEPVS 74

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDRVRTYTISAAEQC 138
                    K  R  ++++K+VE+   AI      ++Q+   +   +      ++ A+Q 
Sbjct: 75  RAVLAVGWGKAVRRSWLMEKAVELEASAIWLWQADHSQSPVPDDIKESWLAQMVAGAKQS 134

Query: 139 DILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
               LP +   P  +E LL+    + +  F      +  +L +   +  +     ++GPE
Sbjct: 135 ANPWLPALRTLPGGIEELLRA-SSDFERRFMLWEGETPEALLEAKDVGGVGTTLYVVGPE 193

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           GG+ + E + L     + P+SLG R+LR +TAA+  + L
Sbjct: 194 GGFSAREVKALREGGMM-PVSLGQRVLRWETAALLCLGL 231


>gi|149020848|ref|ZP_01835377.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483305|ref|ZP_02708257.1| protein YqeU [Streptococcus pneumoniae CDC1873-00]
 gi|225857376|ref|YP_002738887.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           P1031]
 gi|147930489|gb|EDK81472.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043230|gb|EDT51276.1| protein YqeU [Streptococcus pneumoniae CDC1873-00]
 gi|225726153|gb|ACO22005.1| protein YqeU [Streptococcus pneumoniae P1031]
          Length = 247

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E  G E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLTQLDQFDSIIVAYEESGKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|315613654|ref|ZP_07888561.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315314345|gb|EFU62390.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 247

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%)

Query: 30  HYLAHVLRMKEGDN-ILLFNGKDG-EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
            ++  V+R+KE D  IL+FN  DG + L+++  V ++ +F++  +  +   +  VQ   +
Sbjct: 23  KHMFQVMRLKEDDEVILVFN--DGIKRLARVLDV-EARQFEL-VEELADNVELPVQVTIA 78

Query: 88  P--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
               K ++L+++ QK  E+G   I      ++      +     ++++    + A+EQ  
Sbjct: 79  SGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGASEQSK 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---G 195
              +P I         L   D    IV A E    E     L  A+  +   A L+   G
Sbjct: 139 RNLVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAALLQAVTGLEKGAKLLFIFG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           PEGG    E E+  S   V    LGPRILR++TA + A++ +  + 
Sbjct: 199 PEGGLSPAEIESFESKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|323353566|ref|ZP_08088099.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66]
 gi|322121512|gb|EFX93275.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66]
          Length = 250

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 19/229 (8%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84
           D   ++  V+R+KEGD + L+F+  DG  + +++ V    +  +E  +  +   +  VQ 
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLARVLDPSQQSLEILEELADNTELPVQV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    K ++L+++ QK  E+G  AI      ++      +      +++      AAE
Sbjct: 76  TIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135

Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAI 192
           Q     +P I       +FL    D +  IV  +E+  +  +   +  L  +A    V  
Sbjct: 136 QSKRNLIPEIRLFNKKADFLATLADFDRIIVAYEESAKAGETAALVSALSGLAAGAKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           + GPEGG   +E         V+   LGPRILR++TA + A+  V  + 
Sbjct: 196 IFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|312867956|ref|ZP_07728160.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis
           F0405]
 gi|311096360|gb|EFQ54600.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis
           F0405]
          Length = 247

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 15/224 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK-QSDVQYIFS 87
            ++  V+R+KE D + L      + L+++  V G+ +    E     +   Q  +   F 
Sbjct: 23  KHMFQVMRVKEEDEVTLVFDDGIKRLARVVNVEGRQLELVEELDDNVELPVQVTIASGFP 82

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ    
Sbjct: 83  --KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197
            +P I         L   D   +IV A E    E      ++ L  +     + ++ GPE
Sbjct: 141 LVPSITLFEKKSDFLAQLDQFDRIVVAYEESAKEGEVAALIQSLTGLEAGCKLLLIFGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG    E E+  +   V    LGPRILR++TA + A++ V  + 
Sbjct: 201 GGLSPAEIESFTAKGAVLA-GLGPRILRAETAPLYALSAVSVVT 243


>gi|229493162|ref|ZP_04386954.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus
           erythropolis SK121]
 gi|229319893|gb|EEN85722.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus
           erythropolis SK121]
          Length = 253

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 33/239 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  + A V R+  G+ ++L +G+     ++++ VGK          R +   SDVQ +
Sbjct: 22  GQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKD---------RLELLVSDVQVL 72

Query: 86  FSP----------IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRT 129
             P           K  R +  ++ + E G+ A+ P      V           + R R+
Sbjct: 73  EQPKPLVTLVQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAKGVARWRS 132

Query: 130 YTISAAEQCDILTLPFIYP----PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
             +SAA+Q     +P I      P  +  +         +    E+  +   L  L  +A
Sbjct: 133 AAVSAAKQSRRAFVPEIAELHKTPAVIALVRDAVARGAVVAVLHES--ATTPLAGLP-LA 189

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V +++GPEGG    E   L S    TP+ LGP +LR+ TA   A+  +  +   W
Sbjct: 190 SADEVFLVVGPEGGLDDSEISAL-SEAGATPVLLGPTVLRTSTAGAVALGAIGVLTDRW 247


>gi|198274982|ref|ZP_03207514.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135]
 gi|198272429|gb|EDY96698.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135]
          Length = 233

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 34  HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK---QSDVQYIFSPIK 90
            VLR+  G+ I L +GK   + + IS   +  R  V+   +++ +   +  +    +P K
Sbjct: 25  RVLRLGVGEEITLTDGKGCFYRAVISAATQK-RCVVKVVEKTEQEPFWKGHLHLALAPTK 83

Query: 91  T-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
             +R++++ +K+ E+G   +  +  R+++      +RV    +SA +Q      P +   
Sbjct: 84  NMDRMEWLAEKATEIGFDELTFLNCRFSERKVIKTERVEKIVVSAVKQSLKARKPVVNEM 143

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
           T     ++  +   Q   A    G +  L  +  +    +  +LIGPEG +  EE   L 
Sbjct: 144 TDFRRFMER-EFTGQKFIAHCYEGEKPLLRDV--LRKDEDAVVLIGPEGDFSPEEV-ALA 199

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +      +SLG   LR++TAA+ A+ L+
Sbjct: 200 AEKGFQAVSLGKSRLRTETAALVAVHLM 227


>gi|237715604|ref|ZP_04546085.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408613|ref|ZP_06085159.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646252|ref|ZP_06723905.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a]
 gi|294808155|ref|ZP_06766923.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298481449|ref|ZP_06999641.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22]
 gi|229444313|gb|EEO50104.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353478|gb|EEZ02572.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638385|gb|EFF56750.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a]
 gi|294444662|gb|EFG13361.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295086912|emb|CBK68435.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens XB1A]
 gi|298272313|gb|EFI13882.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22]
          Length = 232

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  Q 
Sbjct: 9   IQKSNELPEEEAQHCTRVLRLGIGDEITLTDGKGNFYKAEITVATNKRCFVTIKETIFQE 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +      +  ++  +   Q   A    G +  L+ +       +  +LI
Sbjct: 129 IKQSLKARLPKLNEMIEFDPFIRQ-EFKGQKFIAHCYEGEKPLLKNVLKPGE--DALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 186 GPEGDFSEEEVKKAIEQGFV-PISLGKSRLRTETAALVA 223


>gi|46580095|ref|YP_010903.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46449511|gb|AAS96162.1| conserved hypothetical protein TIGR00046 [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233906|gb|ADP86760.1| protein of unknown function DUF558 [Desulfovibrio vulgaris RCH1]
          Length = 249

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 6/216 (2%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           +G +  +L  V+R+  GD I L +G   E + +++   + S+    E  +      S   
Sbjct: 18  TGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNSVELTPESITTHPEPVSRAV 77

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDRVRTYTISAAEQCDIL 141
                 K  R  ++++K+VE+   AI      ++Q+   +   +      ++ A+Q    
Sbjct: 78  LAVGWGKAVRRSWLMEKAVELEASAIWLWQAEHSQSPVPDDIKESWLAQMVAGAKQSANP 137

Query: 142 TLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            LP +   P  +E LL+    + +  F      +  +L +   +  +     ++GPEGG+
Sbjct: 138 WLPALQTLPGGIEELLRA-SSDFERRFMLWEGETPEALLEAKDVGGVGTTLYVVGPEGGF 196

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + E + L     + P+SLG R+LR +TAA+  + L
Sbjct: 197 SAREVKALREGGMM-PVSLGQRVLRWETAALLCLGL 231


>gi|332201188|gb|EGJ15259.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA47901]
          Length = 247

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    ++ A E  G E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSVIVAYEESGKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|303232126|ref|ZP_07318829.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513232|gb|EFL55271.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 243

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 112/251 (44%), Gaps = 34/251 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +K++F+  PL          D  H++ HV R    +  +   G D           +   
Sbjct: 1   MKKIFIPTPL--DESIVLPKDVTHHILHVFR-HNIEKPITVTGSDN----------RCGI 47

Query: 67  FKVEYQSRSQTKQSDVQYIFSP------------IKTNRLDYMIQKSVEMGMGAIRPV-- 112
           +++  +     + S ++YI SP            +K  +L++++QK+ E+ +  +  V  
Sbjct: 48  YQINDEINGLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYLVPT 107

Query: 113 ---ITRY-TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168
              + +Y  +       R     + A++QC    LP +     L  +L       ++V  
Sbjct: 108 SNCVAKYDAKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVDEPLSNVLDIESECLKLVAY 167

Query: 169 DETCGS--ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +   G   +++L+ +++ +   ++ I IGPEGG+  +E   +      + ++LG  ILR+
Sbjct: 168 ENEAGYTIKDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGGQS-VALGHTILRA 226

Query: 227 DTAAVAAMALV 237
           +TAA+AA+++V
Sbjct: 227 ETAAIAALSMV 237


>gi|306824715|ref|ZP_07458059.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432926|gb|EFM35898.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 247

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFS 87
            ++  V+R+KE D + L+F+  DG  + +++ V       V+ ++R  +  +  V  +  
Sbjct: 23  KHMFQVMRLKEDDEVTLVFD--DG--IKRLARV-------VDVENRQFELVEELVDNVEL 71

Query: 88  PI---------KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
           PI         K ++L+++ QK  E+G   I      ++      +     ++++    +
Sbjct: 72  PIQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIAL 131

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVA 191
            AAEQ     +P I         L   D    I+ A E    E  +  L  A+A +   A
Sbjct: 132 GAAEQSKRNIVPSIQLFEKKADFLAQLDQFDSIIVAYEESAKEGEVAALLQAVAGLEKGA 191

Query: 192 ILI---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            L+   GPEGG    E E+  +   V    LGPRILR++TA
Sbjct: 192 KLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETA 231


>gi|327402528|ref|YP_004343366.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola
           taffensis DSM 16823]
 gi|327318036|gb|AEA42528.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 15/214 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYI 85
           ++  ++  VLR   GD  LL NG      ++++    K    KV  + +     S     
Sbjct: 20  EESKHIIRVLRYVNGDQFLLLNGLGLIVTAEVTDAHPKKCAVKVVSKEQKTRDGSGFHLG 79

Query: 86  FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC--DILT 142
            +P K  +R+++M++K VE+G   +  +    ++     +DR++   ISA +Q   D L 
Sbjct: 80  IAPTKNLDRMEWMVEKIVEIGATKLTFLNCERSERVQLKLDRLQRVAISAMKQAQHDFL- 138

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           L      +  +F+ KN +       A    GS+ S+++L      P+  ILIGPEG +  
Sbjct: 139 LEIEELQSFSDFVAKNPNGG----LAHCMNGSKQSVKEL----KFPS-RILIGPEGDFSE 189

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E E      +   + LG   LR++TA + A  L
Sbjct: 190 AELELALKHGY-EAVHLGESRLRTETAGMVASVL 222


>gi|296877184|ref|ZP_06901224.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           15912]
 gi|296431704|gb|EFH17511.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           15912]
          Length = 247

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 11/222 (4%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
            ++  V+R+KE D + L      + L+++  V       VE  + +      V       
Sbjct: 23  KHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVESRQLELVEELADNVELPVQVTIASGFP 82

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLSKKVEKLEKIALGAAEQSKRNLV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199
           P I         L   D   +IV A E    E      ++ L  +     +  + GPEGG
Sbjct: 143 PSITLFEKKADFLAQLDQFDRIVVAYEESAKEGEAAALIQSLTGLEAGSKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   +    LGPRILR++TA + A++ V  + 
Sbjct: 203 LSPAEIESFEAKGAILA-GLGPRILRAETAPLYALSAVSVVT 243


>gi|294673777|ref|YP_003574393.1| hypothetical protein PRU_1064 [Prevotella ruminicola 23]
 gi|294472516|gb|ADE81905.1| conserved hypothetical protein TIGR00046 [Prevotella ruminicola 23]
          Length = 231

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 101/224 (45%), Gaps = 5/224 (2%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
           + Q +   D+  +   VLR+K GD + L +G    + ++++       +    +   Q  
Sbjct: 5   ENQTELPTDEAMHAMRVLRLKSGDELFLMDGVGNYFRAQVTVAATHHCYYEILEKLPQEP 64

Query: 79  Q--SDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135
           Q    +    +P K  +R+++M++K+ E+G+  +  +  ++++     + R+     +A 
Sbjct: 65  QWKGHLHLGIAPTKMMDRMEWMMEKATEVGIDEVSFLNCKFSERRLVKLVRLDKIVTAAV 124

Query: 136 EQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +Q      P +        FL +       I    E        ++L   +   +  +L+
Sbjct: 125 KQSHKAWKPQVNEMVHFNHFLEQPIQGRKYIAHCYEEVPRVELFDELRKPSDSQDATVLV 184

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  +E +   +  +V+ +SLG   LR++TA +AA+ ++Q
Sbjct: 185 GPEGDFSIDEVKAAVAAGWVS-VSLGSARLRTETAGLAAVMMMQ 227


>gi|126696059|ref|YP_001090945.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543102|gb|ABO17344.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. MIT 9301]
          Length = 257

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 37/234 (15%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++ HY+  V+R+K G  I + NG+   W        K+I+ K +     Q K+    Y+F
Sbjct: 27  EETHYINKVMRIKNGKEIFIANGEGSLW--------KAIKIKNDCLEIGQLKKP---YLF 75

Query: 87  SP-----------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYTI- 132
                        I  +  + +++   E+G+  I+P+ +    N + N  R  +R  +I 
Sbjct: 76  QEQEIHLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNSII 135

Query: 133 -SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENS-LEKLHAIAHI 187
             A EQ + L  P I     +   LK+ D+  ++  +   +ET    N  L K     + 
Sbjct: 136 NEAVEQSERLWKPSILNGMDIVEWLKSRDNQERVSISITREETLYDLNQWLRKQQEFVNR 195

Query: 188 PNVAI--LIGPEGGYHSEEKETLH--SLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  +IGPEGG+ S+E +  +  ++ FV    L   ILR+ TA++ A +++
Sbjct: 196 RGGIFWNVIGPEGGWSSKEIDFFNRKNIAFV---KLSDTILRTSTASINASSIL 246


>gi|331265876|ref|YP_004325506.1| hypothetical protein SOR_0503 [Streptococcus oralis Uo5]
 gi|326682548|emb|CBZ00165.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 247

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++   T+ AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKITLGAAEQSKRNLV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    IV A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAALLQAVTGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|253583198|ref|ZP_04860396.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251833770|gb|EES62333.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 237

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 12/210 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE--YQSRSQTKQSDVQYIFS 87
           ++L +V R+K  + I   +G+   +   +S   K I  ++E  ++ R   K   +     
Sbjct: 25  NHLKNVFRVKLDEKIRAVDGEKEYFCKVVSIDKKEIILEIEQIFEDRYSHKVK-IDAALG 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +++D  IQK  E+G+  I P+ + R         D+       A +QC  +    I
Sbjct: 84  ILKNDKMDLAIQKLTEIGVNKIIPLAVKRGVVKITEKKDKWDLIVREALKQCQAVKATEI 143

Query: 147 YPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEGGYHSE 203
                LE +  + +D    ++     C  E +L+ L  +       +  +IG EGG+  E
Sbjct: 144 DEVKKLEEIEFEEYD----LIIVPYECEEEYTLKNLLRNEEKSPKKILYIIGSEGGFDPE 199

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           E E L        ++LG RILR++TA++  
Sbjct: 200 EIEFLKRKK-ANIVTLGRRILRAETASIVV 228


>gi|297571544|ref|YP_003697318.1| hypothetical protein Arch_0977 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931891|gb|ADH92699.1| protein of unknown function DUF558 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 245

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 31/251 (12%)

Query: 10  LFVDFPL---CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++VD  L   C+    +  GD+  + A V R + G+ I + NGK       ++ V K S+
Sbjct: 5   VYVDPDLSAACVGETIRLDGDEARHAATVRRTRVGERIDIVNGKGLRATITVTDVAKSSL 64

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQ-- 118
              VE+ +        +  + +  K  R +  ++ + E G  A  P      I  ++   
Sbjct: 65  VGTVEHVANDPAHNPQITLVQALAKGGRDEQAVETATEYGADAFIPWQAERSIVSWSDPA 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R      SAA+Q     +P +  P +   L       C I    + C     +
Sbjct: 125 KARKGVGRWEATAQSAAKQSRRSWIPTVDQPHSSASLA------CHIA---DCCADGGVV 175

Query: 179 EKLHAIAHIP----------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              H  A  P           V I++GPEGG   +E E L +      L LG  +LRS T
Sbjct: 176 YICHESATTPITTQLDSSSRKVMIVVGPEGGITDKELELLTNAGGRVVL-LGEHVLRSAT 234

Query: 229 AAVAAMALVQA 239
           A   A+A+++A
Sbjct: 235 AGPWAIAVIRA 245


>gi|224373445|ref|YP_002607817.1| 16S ribosomal RNA methyltransferase RsmE [Nautilia profundicola
           AmH]
 gi|223589351|gb|ACM93087.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 219

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 44/238 (18%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70
           FV FP     Q   +GD++ YL  V R+K+ + + + N KD ++L    Y+     +K+E
Sbjct: 3   FVYFP-NPGVQITLTGDEHKYLFKVRRVKKNELVKIRNLKD-DYL----YI-----YKIE 51

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYM---------IQKSV----EMGMGAIRPVITRYT 117
             ++ +   S V+   SP K  +  ++         I+K++    E+G+G I  +   Y+
Sbjct: 52  AINKKEAILSLVEKKLSPNKPEKFFHLAWCIIDPKNIEKALPSLNEIGVGKITFIYCDYS 111

Query: 118 Q-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--TCGS 174
           Q N    ++R+    I++ +QC   +L  I    + +   + +++   + F  +   CG 
Sbjct: 112 QKNFKLKLERLTKILINSCQQCGRSSLMEIEFLDSSDEFFQKYNNFSALDFDGKEIKCGF 171

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +S               LIGPEGG+   E++      F     L   ILRS+TAAV 
Sbjct: 172 YSS------------YPFLIGPEGGFSDNERKY-----FKEKFRLKGFILRSETAAVG 212


>gi|28378630|ref|NP_785522.1| hypothetical protein lp_1989 [Lactobacillus plantarum WCFS1]
 gi|300768158|ref|ZP_07078063.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180786|ref|YP_003924914.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271466|emb|CAD64371.1| unknown [Lactobacillus plantarum WCFS1]
 gi|300494222|gb|EFK29385.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046277|gb|ADN98820.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 250

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHY-NMDRVRTYTISAAEQCDILTL 143
           K ++ + ++Q+  E+G  A      +  + ++  N     + R+      AAEQ     +
Sbjct: 88  KGDKPEQIVQRGTELGASAFVFFDSQWAVAKWAANKRARKLARLAKIAQGAAEQSHRTMI 147

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAILIGPEGGY 200
           P +   T L  LL +  ++  +V  +E+     S   ++ L  +     +  + GPEGG 
Sbjct: 148 PSVSYATDLNQLLAHVSYDTGVVAWEESAKQGESSQLVQTLKTMTAPQRLLAIFGPEGGL 207

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +E  TL +   +  + LGPRI+R++TA +  ++ V   C
Sbjct: 208 APQEVATLQT-AGIAAVGLGPRIMRAETAPLYLLSSVSFWC 247


>gi|160887114|ref|ZP_02068117.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483]
 gi|156107525|gb|EDO09270.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483]
          Length = 232

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 7/219 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  Q 
Sbjct: 9   IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQE 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +      +  ++  +   Q   A    G +  L+  + +    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLGKSRLRTETAALVA 223


>gi|76799987|ref|ZP_00781940.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
 gi|76584697|gb|EAO61466.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
          Length = 222

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD++ QK+ E+G  AI        V+    +      D++    + AAEQ     L
Sbjct: 59  KGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQSKRNRL 118

Query: 144 P---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           P           +  L  +D   +I  A E    E  L    + L  +     +  + GP
Sbjct: 119 PQVRLFEKKADFQAELAGFD---KIFIAYEESAKEGELSALAQNLQTVKAGDKLLFIFGP 175

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG   +E      +  +  + LGPRI+R++TA + A++++
Sbjct: 176 EGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVI 215


>gi|332364867|gb|EGJ42636.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 247

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KEGD + L      + L+++    +     VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQSLEIVEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  AI      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKKLGKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196
             +P +        FL    D +  IV  +E+     S     A++ +     V  + GP
Sbjct: 140 NLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESAALFRALSGLEAGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           EGG   +E +       V+   LGPRILR++TA + A+  V  + 
Sbjct: 200 EGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|307707510|ref|ZP_07643992.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|307616462|gb|EFN95653.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
          Length = 247

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 29/231 (12%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------V 82
            ++  V+R+KE D + L+F+  DG  + ++++V       VE +     ++ D      V
Sbjct: 23  KHMFQVMRLKEDDEVTLVFD--DG--VKRLAHV-----LDVEARQFELVQELDDNVELPV 73

Query: 83  QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           Q   +    K ++L+++ QK  E+G   I      ++      +     ++++    + A
Sbjct: 74  QVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGA 133

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNV 190
           AEQ     +P I         L   D   +IV A E    E      L+ ++ +     +
Sbjct: 134 AEQSKRNLVPSIKLFEKKGDFLAQLDQFDRIVVAYEESAKEGEAAALLQAVNGLEKGAKL 193

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             + GPEGG    E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 194 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243


>gi|333027170|ref|ZP_08455234.1| putative RsmE family RNA methyltransferase [Streptomyces sp.
           Tu6071]
 gi|332747022|gb|EGJ77463.1| putative RsmE family RNA methyltransferase [Streptomyces sp.
           Tu6071]
          Length = 251

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 15/230 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEY-QSRSQTKQSDV 82
           G +  +   V R++ G+ I+L +G +G W   +  +  GK  R  VE  + R +   S  
Sbjct: 25  GPEGRHAVSVKRLRPGEEIVLSDG-EGRWAPCVVKAAEGKD-RLSVEVGELREEPVPSPR 82

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTISAA 135
             +   + K +R +  ++   E G+ AI P      +T++  +    ++ + R     A 
Sbjct: 83  LVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDRGAKSLAKWRATAREAG 142

Query: 136 EQCDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +Q      P I    +T E           +V  ++T  +   L  L  +    ++ +++
Sbjct: 143 KQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPLATLP-LPDEGDIVLVV 201

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG   EE  +  +        LGP +LR+ TA  AA+AL+    G W
Sbjct: 202 GPEGGVAPEEIASFTAA-GAHVCRLGPSVLRTSTAGTAAVALLSGRTGRW 250


>gi|324990424|gb|EGC22362.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK353]
 gi|327459571|gb|EGF05917.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1]
 gi|327490771|gb|EGF22552.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 250

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KEGD + L      + L+++    +     VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQSLEIVEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  AI      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKKLGKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAILIGP 196
             +P +        FL    D +  IV  +E+     S     A++ +     V  + GP
Sbjct: 140 NLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESAALFRALSGLEAGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           EGG   +E +       V+   LGPRILR++TA + A+  V  + 
Sbjct: 200 EGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|47459063|ref|YP_015925.1| hypothetical protein MMOB2280 [Mycoplasma mobile 163K]
 gi|47458392|gb|AAT27714.1| expressed protein [Mycoplasma mobile 163K]
          Length = 223

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYT---ISA 134
           +++V    + I     + ++QK+ E+G   I P I++++     + + ++  +    ++A
Sbjct: 65  KNEVVLAMALINPKNFELVLQKATELGATKIIPFISKFSNFKKDFALKKIERWNEIILNA 124

Query: 135 AEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           + Q     +P +  P     +L  N+++   I + +     E     L+      N   +
Sbjct: 125 SSQSFRNKVPILEKPLDFSQVLDLNYEYK-YIAYENTDLSKE-----LNTNLFCSNSIFI 178

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           IGPEGG+  +E +T     + T +SLG RILRS+TAA   ++ V 
Sbjct: 179 IGPEGGFFQDEIKTAIEKGWKT-ISLGKRILRSETAAFFVLSRVN 222


>gi|322375727|ref|ZP_08050239.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300]
 gi|321279435|gb|EFX56476.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300]
          Length = 247

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88
            ++  V+R+KE D + L      + L+++  V ++ +F++  Q  +   +  VQ   +  
Sbjct: 23  KHMFQVMRLKEEDEVTLVFDDGIKRLARVLDV-EACQFEL-VQELADNVELPVQVTIASG 80

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ    
Sbjct: 81  FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENSLEKLHAIAHIPNVAILI---GPE 197
            +P +         L   D    IV A +E+     +   L A+  +   A L+   GPE
Sbjct: 141 IVPSVKLFEKKADFLAQLDQFDSIVVAYEESAKEREAAALLQAVTGLEKGAKLLFIFGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG    E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 201 GGLSPTEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|325689540|gb|EGD31545.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK115]
          Length = 250

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 17/228 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYI 85
           D   ++  V+R+K GD +  F   DG  + +++ V    +  +E  +  +   +  VQ  
Sbjct: 20  DTAKHMFSVMRLKAGDQVT-FVFDDG--VKRLARVLDPSQQSLEIVEELADNTELPVQVT 76

Query: 86  FSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
            +    K ++L+++ QK+ E+G  AI      ++      +      +++      AAEQ
Sbjct: 77  IASGFPKGDKLEFITQKATELGASAIWGFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQ 136

Query: 138 CDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLHAIAHIPNVAIL 193
                +P I +    ++FL    D +  IV  +E      S   +  L  +A    V  +
Sbjct: 137 SKRNLIPEIRFFDKKVDFLAALTDFDRIIVAYEELAKEGESAALVRALSGLAAGAKVLFI 196

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            GPEGG   +E         V+   LGPRILR++TA + A+  V  + 
Sbjct: 197 FGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|226307226|ref|YP_002767186.1| hypothetical protein RER_37390 [Rhodococcus erythropolis PR4]
 gi|226186343|dbj|BAH34447.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 253

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 49/247 (19%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  + A V R+  G+ ++L +G+     ++++ VGK          R +   SDVQ +
Sbjct: 22  GQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKD---------RLELLVSDVQVL 72

Query: 86  FSP----------IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRT 129
             P           K  R +  ++ + E G+ A+ P      V           + R R+
Sbjct: 73  EQPKPLVTLIQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAKGVARWRS 132

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHI 187
             +SAA+Q     +P I   + L        H    V A   +       +  LH  A  
Sbjct: 133 AAVSAAKQSRRAFVPEI---SDL--------HKTAAVIALIRDAVARGAVVAVLHESATT 181

Query: 188 P----------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P           V +++GPEGG    E   L S    TP+ LGP +LR+ TA   A+  +
Sbjct: 182 PLAGLPLASADEVFLVVGPEGGLDDSEISAL-SEAGATPVLLGPTVLRTSTAGAVALGAI 240

Query: 238 QAICGDW 244
             +   W
Sbjct: 241 GVLTDRW 247


>gi|307297950|ref|ZP_07577754.1| protein of unknown function DUF558 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916036|gb|EFN46419.1| protein of unknown function DUF558 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 228

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 17/218 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80
            G+  H    V R K GD +   +G+   +   +  +GKS       + EY  R      
Sbjct: 18  GGETKHL--RVTRAKPGDELTGIDGRGTVYRFLLEELGKSSASGTVVEREYVERDG---K 72

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
            +    +  K  RL  +I+K+ E+G+  I  +       +  +  ++  +   A E    
Sbjct: 73  SITVAVAATKWPRLHILIEKATELGVDRIE-LFNSLRSVSRVDETKLTKFNAVAREAAKQ 131

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
              P+I   T  + L     +N  + F     G    LE    +A    + +++GPEGG+
Sbjct: 132 SVNPYIPEITVSQTLPLEGSYNLLLEF-----GGRPLLEVEEKLACERKLRLIVGPEGGF 186

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             EE + + +    TP+SLG R LR +T+ +  + ++ 
Sbjct: 187 APEEIKDIST--RCTPVSLGRRTLRVETSVIVVLGIIN 222


>gi|126436047|ref|YP_001071738.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JLS]
 gi|126235847|gb|ABN99247.1| protein of unknown function DUF558 [Mycobacterium sp. JLS]
          Length = 248

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 18/232 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           GD   +  +V R + G+++ L +G        +  VGK        + R+ T  +    +
Sbjct: 21  GDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTARVLERRTVTPPAPAVTV 80

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY--TQNTHYNMDRVRTYTISAAEQ 137
              I K++R +  ++ + E G  A+        + R+         + R R    SAA Q
Sbjct: 81  VQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAAKVDKGLRRWRAVVRSAARQ 140

Query: 138 CDILTLPFIYPP-TTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
                +P +    TT E + +      D    +V  +   G    ++   A A    V +
Sbjct: 141 SRRAHIPPVDGVVTTAELVCRVTAEVADGATVLVLHESATGPLTGVDLTQARA----VTL 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG   EE + L +   V  + LGP +LR+ TAA   +  +  +   W
Sbjct: 197 IVGPEGGIADEELDALTAAGAVA-VRLGPTVLRTSTAAAVGLGALGVLTPRW 247


>gi|318061224|ref|ZP_07979945.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp.
           SA3_actG]
 gi|318076106|ref|ZP_07983438.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp.
           SA3_actF]
          Length = 251

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 15/230 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEY-QSRSQTKQSDV 82
           G +  +   V R++ G+ I+L +G +G W   +  +  GK  R  VE  + R +   S  
Sbjct: 25  GPEGRHAVSVKRLRPGEEIVLSDG-EGRWAPCVVTAAEGKD-RLSVEVGELREEPLPSPR 82

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTISAA 135
             +   + K +R +  ++   E G+ AI P      +T++  +    ++ + R     A 
Sbjct: 83  LVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDRGAKSLAKWRATAREAG 142

Query: 136 EQCDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +Q      P I    +T E           +V  ++T  +   L  L  +    ++ +++
Sbjct: 143 KQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPLATLP-LPDEGDIVLVV 201

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG   EE  +  +        LGP +LR+ TA  AA+AL+    G W
Sbjct: 202 GPEGGVAPEEIASFTAA-GAHVCRLGPSVLRTSTAGTAAVALLSGRTGRW 250


>gi|76787751|ref|YP_330523.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae
           A909]
 gi|77405013|ref|ZP_00782113.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           H36B]
 gi|77411955|ref|ZP_00788285.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           CJB111]
 gi|76562808|gb|ABA45392.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           A909]
 gi|77161981|gb|EAO72962.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           CJB111]
 gi|77176307|gb|EAO79076.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           H36B]
          Length = 246

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYI 85
           D   ++ +V+R+ E D ++L      + L+K+  V  S  RF++  +  S  +      I
Sbjct: 20  DTIKHMFNVMRLTEDDQVVLVFDDTIKRLAKV--VDSSAHRFQILEELDSNVEMPVQVTI 77

Query: 86  FSPI-KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
            S   K ++LD + QK+ E+G  AI        V+    +      D++    + AAEQ 
Sbjct: 78  ASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKLAKKEDKLAKIAMGAAEQS 137

Query: 139 DILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVA 191
               LP           +  L  +D   +I  A E    E  +    + L  +     + 
Sbjct: 138 KRNRLPQVRLFEKKADFQAELNGFD---KIFIAYEESAKEGEMSALAQNLQTVKAGDKLL 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + GPEGG   +E         +  + LGPRI+R++TA + A++++
Sbjct: 195 FIFGPEGGISPKEIAAFEEAGAIK-VGLGPRIMRTETAPLYALSVI 239


>gi|119716137|ref|YP_923102.1| 16S ribosomal RNA methyltransferase RsmE [Nocardioides sp. JS614]
 gi|119536798|gb|ABL81415.1| protein of unknown function DUF558 [Nocardioides sp. JS614]
          Length = 246

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 15/212 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQY 84
           GD+ H+   V R++ G+ ++L +G     +  +S  GK + F V  +S R + +      
Sbjct: 24  GDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRV-FTVAVESVRVEPEPEPAVV 82

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQ 137
           +   + K  R +  ++   E+G+  I P      V     +    ++ R R     AA+Q
Sbjct: 83  VVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRATAREAAKQ 142

Query: 138 CDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
              +  P + P  +T + +      +  +V  ++  G    L+    +     + +++GP
Sbjct: 143 SRRMRFPSVAPLASTGDVVELLGAADLAVVLHEDATGPVAGLD----VPAAGRIVVVVGP 198

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           EGG   +E         V  + LG  +LR+ T
Sbjct: 199 EGGLTEDEVAIFVGAGAVC-VRLGAEVLRTST 229


>gi|283955406|ref|ZP_06372905.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793166|gb|EFC31936.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 218

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 23/212 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQ 83
           G+ + +L    R+KE   + L N +D    S I  +    S   K   +     KQS++ 
Sbjct: 18  GESFKHLK-ARRVKENSELNLRNLQDNFLYSYIITNLTRNSCTLKFLDKKSQSIKQSELN 76

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILT 142
              + I    L+  +    E+G+  +  V T ++Q N   +++R     IS+ EQC   T
Sbjct: 77  LALAIIDIKVLEKTLSFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNT 136

Query: 143 -LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            + FI   +T EF+ K + +   + F  E     N  E              IGPEGG+ 
Sbjct: 137 KMDFIIHQSTQEFVQK-FPNAIMVDFQGEKQSHFNEKE-----------LYFIGPEGGFS 184

Query: 202 SEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232
           + E+     L F   +SL    IL+S TA +A
Sbjct: 185 NNER-----LLFNQKISLKSSNILKSQTAIIA 211


>gi|260171577|ref|ZP_05757989.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. D2]
 gi|293370883|ref|ZP_06617428.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f]
 gi|315919891|ref|ZP_07916131.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634099|gb|EFF52643.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f]
 gi|313693766|gb|EFS30601.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 232

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 7/219 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  Q 
Sbjct: 9   IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQE 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +      +  ++  +   Q   A    G +  L+  + +    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLGKSRLRTETAALVA 223


>gi|253752746|ref|YP_003025887.1| hypothetical protein SSUSC84_1911 [Streptococcus suis SC84]
 gi|253754571|ref|YP_003027712.1| hypothetical protein SSU1893 [Streptococcus suis P1/7]
 gi|253756504|ref|YP_003029644.1| hypothetical protein SSUBM407_1958 [Streptococcus suis BM407]
 gi|251817035|emb|CAZ52687.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251818968|emb|CAZ56815.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251820817|emb|CAR47583.1| conserved hypothetical protein [Streptococcus suis P1/7]
 gi|319759164|gb|ADV71106.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis JS14]
          Length = 248

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           D   ++  V+R++ GD I+L      + L+++     +S+    E     +   S    +
Sbjct: 21  DTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQSQSVEIIEELTDNVELPISVTIAM 80

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139
             P K ++L+++ QK+ E+GM A+        V+    +      +++      AAEQ  
Sbjct: 81  GFP-KGDKLEFVAQKATELGMSALWAFPADWSVVKWDGKKLAKKAEKLEKIAQGAAEQSK 139

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIG 195
              +P +         L       QI+ A E    E    N ++ L  +    +V +++G
Sbjct: 140 RNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVG 199

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG   EE         V    LGPRILR++TA + A++ +
Sbjct: 200 PEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSTI 240


>gi|319940233|ref|ZP_08014585.1| YqeU [Streptococcus anginosus 1_2_62CV]
 gi|319810535|gb|EFW06871.1| YqeU [Streptococcus anginosus 1_2_62CV]
          Length = 246

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V+ P+ I+ +     D   ++  V+R+ E D ++L      + L+++S   + +   VE 
Sbjct: 10  VENPVIIRDK-----DTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVLNLVEE 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMD 125
              +      V       K ++L+++ QK+ E+G  AI    + ++      +      D
Sbjct: 65  LPDNAELPIHVTVASGFPKGDKLEWVAQKTTELGAAAIWAFPSDWSVAKWDGKKLAKKAD 124

Query: 126 RVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           ++    + AAEQ     +P +      ++FL      +C IV  +E+     S   + A+
Sbjct: 125 KLEKIVLGAAEQSKRNLIPEVRLFEKKVDFLDCLSQFDCVIVAYEESAKEGESAALVKAV 184

Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             +     +  + GPEGG    E  TL     +    LGPRILR++TA + A++ V  +
Sbjct: 185 TGLKKGSRILFVFGPEGGLSPAEIATLEEAGAILA-GLGPRILRTETAPLYALSAVSVL 242


>gi|322392665|ref|ZP_08066125.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321144657|gb|EFX40058.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 247

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 11/216 (5%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
            ++  V+R+KE D + L      + L+++  V       VE  + +      V       
Sbjct: 23  KHMFQVMRLKEDDKVTLVFDDGIKRLARVVNVETRQLELVEELADNVELPVQVTIASGFP 82

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNLV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAHIPNVAILI---GPEGG 199
           P +         L   D   +IV A E    E  S   + A+A +   A L+   GPEGG
Sbjct: 143 PEVTLFEKKADFLAQLDQFDRIVVAYEESAKEGESAALIQAVAGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               E E+  +   V    LGPRILR++TA + A++
Sbjct: 203 LSPVEIESFEAKGAVLA-GLGPRILRAETAPLYALS 237


>gi|293365945|ref|ZP_06612648.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307702347|ref|ZP_07639305.1| RNA methyltransferase family protein [Streptococcus oralis ATCC
           35037]
 gi|291315623|gb|EFE56073.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307624150|gb|EFO03129.1| RNA methyltransferase family protein [Streptococcus oralis ATCC
           35037]
          Length = 247

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199
           P I         L  +D    IV A E    E      L+ +  +     +  + GPEGG
Sbjct: 143 PSIQLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAALLQTVTGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|146319760|ref|YP_001199472.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis
           05ZYH33]
 gi|146321960|ref|YP_001201671.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis
           98HAH33]
 gi|145690566|gb|ABP91072.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
           05ZYH33]
 gi|145692766|gb|ABP93271.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
           98HAH33]
 gi|292559369|gb|ADE32370.1| hypothetical protein SSGZ1_1914 [Streptococcus suis GZ1]
          Length = 252

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           D   ++  V+R++ GD I+L      + L+++     +S+    E     +   S    +
Sbjct: 25  DTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQSQSVEIIEELTDNVELPISVTIAM 84

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCD 139
             P K ++L+++ QK+ E+GM A+        V+    +      +++      AAEQ  
Sbjct: 85  GFP-KGDKLEFVAQKATELGMSALWAFPADWSVVKWDGKKLAKKAEKLEKIAQGAAEQSK 143

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIG 195
              +P +         L       QI+ A E    E    N ++ L  +    +V +++G
Sbjct: 144 RNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEGEQANLVKILSGLEIGQSVLVIVG 203

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG   EE         V    LGPRILR++TA + A++ +
Sbjct: 204 PEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSTI 244


>gi|307705458|ref|ZP_07642313.1| RNA methyltransferase family protein [Streptococcus mitis SK597]
 gi|307620993|gb|EFO00075.1| RNA methyltransferase family protein [Streptococcus mitis SK597]
          Length = 247

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 15/218 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88
            ++  V+R+KE D + L      + L+++  V ++ +F++  +  +   +  VQ   +  
Sbjct: 23  KHMFQVMRLKEDDEVTLVFDDGIKRLARVLDV-ETRQFEL-VEELADNVELPVQVTIASG 80

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ    
Sbjct: 81  FPKGDKLEFITQKVTELGARQIWAFPADWSVAKWDDKKLGKKVEKLEKIALGAAEQSKRN 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPE 197
            +P +         L   D   ++V A E    E     L  A+A +   A L+   GPE
Sbjct: 141 LVPSVTLFEKKAAFLAQLDQFDRVVVAYEESAKEGEAAALLQAVAGLEKGAKLLFIFGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GG    E E+  +   V    LGPRILR++TA + A++
Sbjct: 201 GGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALS 237


>gi|327459188|gb|EGF05536.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1057]
          Length = 250

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 21/218 (9%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTK-QSDVQY 84
           D   ++  V+R+K GD + L      + L+++   G+ S+    E    ++   Q  +  
Sbjct: 20  DTAKHMFSVMRLKAGDQVTLVFDDGMKRLARVLDPGQHSLEIMEELADNTELPVQVTIAS 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
            F   K ++L+++ QK+ E+G GAI      ++      +      +++      AAEQ 
Sbjct: 80  GFP--KGDKLEFITQKATELGAGAIWAFQADWSVAKWDGKKLAKKSEKLEKIAQGAAEQS 137

Query: 139 DILTLPFIY---PPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVA 191
               +P +         +  L ++D   +I+ A E    E      +  L  +     V 
Sbjct: 138 KRNLIPEVRLFDKKADFQAALADFD---RIIVAYEESAKEGETAALVRALSGLEAGAKVL 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            + GPEGG   EE         V+   LGPRILR++TA
Sbjct: 195 FIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETA 231


>gi|240169914|ref|ZP_04748573.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 248

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 13/213 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           GD+  + A V R++ G+ ++L +G+      ++   G+  +  +V  +  +   +  V  
Sbjct: 22  GDEGFHAATVRRIRPGEEVVLGDGEGDLARCRVERAGRDGLAARVLERWSTVPARPAVTV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K+ R +  I+ + E G  A       R V +         + R R+   SAA Q 
Sbjct: 82  VQALPKSERSELAIELATEAGADAFVAWQAARCVASWNGSRVDKGLRRWRSVARSAARQS 141

Query: 139 DILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
               +P +  P     L   +++      +V A     +    E   A+A   ++ ++IG
Sbjct: 142 RRAYIPPVDGPLSTAALTVRVRDEVARGAMVLALHESATARLAEV--ALAQANSLMLVIG 199

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           PEGG   EE + L     V  + LGP +LR+ T
Sbjct: 200 PEGGIAPEEIDALTGAGAVA-VRLGPTVLRTST 231


>gi|322377483|ref|ZP_08051974.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334]
 gi|321281683|gb|EFX58692.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334]
          Length = 247

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNVV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L  +D    I+ A E    E     L   +A +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQFDQFDSIIVAYEESAKEGEAAALLQTVAGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243


>gi|224476685|ref|YP_002634291.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421292|emb|CAL28106.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 250

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNT-HYNMDRVRTYTISAAEQCDILT 142
           +K ++ ++++QK  E+G     PV     I +  QN     + R       AAEQ   L 
Sbjct: 86  LKADKYEWLLQKCTELGASHFIPVQMDRSIVKLNQNKIEKKLVRWNKIVKEAAEQSYRLI 145

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL----HAIAHIPNVAILIGPEG 198
           +P     + L+ +  N D    ++ A E    E  + +L            + I+ GPEG
Sbjct: 146 IPTFEFISNLKQVYVNIDKYDYVLVAYEDAAKEGEISQLKKTLQQFQSGNRILIVFGPEG 205

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G   EE         +  + LG RILR++TA + A++ +
Sbjct: 206 GLSEEEVALFQGNSEI--VGLGKRILRAETAPLYALSAI 242


>gi|183983662|ref|YP_001851953.1| hypothetical protein MMAR_3682 [Mycobacterium marinum M]
 gi|183176988|gb|ACC42098.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 253

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ-Y 84
           GD+  + A V R++ G+ ++L +G            G+  R  VE+ +R       +Q +
Sbjct: 22  GDEGFHAATVRRIRPGEQLVLGDG-----------AGELARCVVEHAARDGLTARVLQRW 70

Query: 85  IFSPI-----------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRV 127
             +P+           K+ R +  ++ + E G  A       R V           + R 
Sbjct: 71  SVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADKGLRRW 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAI 184
           R+   SAA Q     +P +    +   L++      Q   +V A     ++  ++   A+
Sbjct: 131 RSAARSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVDT--AV 188

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A   ++ +++GPEGG   EE + L     V+ + LGP +LR+ T
Sbjct: 189 AQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTST 231


>gi|203287810|ref|YP_002222825.1| uncharacterized protein conserved [Borrelia recurrentis A1]
 gi|201085030|gb|ACH94604.1| uncharacterized protein conserved [Borrelia recurrentis A1]
          Length = 242

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 19/217 (8%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           YHYL +V R++ GD + +  GK     S+I S     IRF        + +  ++    S
Sbjct: 24  YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFEIDIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RVRTYTI--SAAEQCDI 140
            +K  +LD  +++ VE+G+ +I  ++         +MD     ++R   I   A +Q   
Sbjct: 84  NLKGRKLDLSLRQVVEIGVNSIN-IVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGN 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILIGPEG 198
             +P I        +  +   N  + ++  D     EN       I+    + ILIGPEG
Sbjct: 143 AQIPSINFYNDFFSIPYSSSVNYYVAYSKGDFLHLGEN-------ISVFGKIGILIGPEG 195

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +   E +    L F   +     ILR+DTA V A+A
Sbjct: 196 CFSKLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231


>gi|254526209|ref|ZP_05138261.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537633|gb|EEE40086.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus
           str. MIT 9202]
          Length = 257

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 33/234 (14%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           S ++ HYL  V+R+K G  I + NG+   W        K+I+ K +     + K+    Y
Sbjct: 25  SKEEAHYLNKVMRIKNGKEIFITNGEGSLW--------KAIKVKNDCLEIIKLKKP---Y 73

Query: 85  IFSP-----------IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYT 131
           +F             I  +  + +++   E+G+  I+P+ +    N + N  R  +R  +
Sbjct: 74  LFQEQEIYLLGIAVVIPKSGFEDILKMCTEIGIDYIQPLFSERQVNKNLNFSRKLLRWNS 133

Query: 132 I--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSENS-LEKLHAIA 185
           I   A EQ + L  P I     +   LK+ D+  ++   +  +E     N  L K    A
Sbjct: 134 IIKEAVEQSERLWKPSILNGMDIIKWLKSRDNQERVSISITREEPPYDLNKWLRKQQEFA 193

Query: 186 HIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +        +IGPEGG+ S+E +  +    +T + L   ILR+ TA++ A +++
Sbjct: 194 NKKGGIFWNVIGPEGGWSSKEIDFFNK-NNITFVKLSDTILRTSTASINASSIL 246


>gi|194396708|ref|YP_002038374.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           G54]
 gi|194356375|gb|ACF54823.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 247

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A++ +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVSGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|228477933|ref|ZP_04062546.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           salivarius SK126]
 gi|228250326|gb|EEK09571.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           salivarius SK126]
          Length = 247

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 16/236 (6%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V+ P+ IK +     D   ++ +V+R+ E D ++L      + L++++     I   +E 
Sbjct: 10  VENPVIIKDK-----DTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHIFEVIED 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMD 125
            + +      V       K ++LD + QK+ E+G  AI        V+    +      D
Sbjct: 65  LNDNVEMPVSVTIASGFPKGDKLDLVTQKATELGAQAIWAFPADWSVVKWDGKKLAKKED 124

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAI 184
           ++    + AAEQ     +P +         L   D+  +I  A E       L  L   +
Sbjct: 125 KLAKIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELATLAREL 184

Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             + N   +  + GPEGG    E +       +  + LGPRI+R++TA + A++ V
Sbjct: 185 VQVENSQKILFIFGPEGGISPSEIDVFEEAGGLK-IGLGPRIMRTETAPLYALSSV 239


>gi|167464493|ref|ZP_02329582.1| hypothetical protein Plarl_18376 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 163

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+       T  +  GD  H+L  V+R + G+ I++ +G   E L++I+ V K++ 
Sbjct: 1   MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R  T +  +Q ++   + K ++++ +IQK  E+G     P ++  T      +
Sbjct: 61  TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI 146
                  R +     AAEQ     +P +
Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVV 148


>gi|332358563|gb|EGJ36387.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 250

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KEGD + L      + L+++    +     VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQSLEIVEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  AI      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENSLEKLHAIAHI---PNVAILIGP 196
             +P +         L        IV A +E+  +  S   + A++ +     V  + GP
Sbjct: 140 NLIPEVRLFEKKSDFLNQLAQFGTIVVAYEESAKAGESAALVRALSGLEAGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           EGG   EE         V+   LGPRILR++TA + A+  V  + 
Sbjct: 200 EGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVLS 243


>gi|225861586|ref|YP_002743095.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|225727552|gb|ACO23403.1| protein YqeU [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389950|gb|EGE88295.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA04375]
 gi|332200328|gb|EGJ14401.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA47368]
          Length = 247

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 29/231 (12%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------V 82
            ++  V+R+KE D + L+F+  DG  + +++ V       VE +     ++ D      V
Sbjct: 23  KHMFQVMRLKEDDEVTLVFD--DG--IKRLARV-----LDVEARQFELVEELDDNVELPV 73

Query: 83  QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           Q   S    K ++L+++ QK  E+G   I      ++      +     ++++    + A
Sbjct: 74  QVTISSGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGA 133

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAIL 193
           AEQ     +P I         L   D    I+ A E    E     L  A+  +   A L
Sbjct: 134 AEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKL 193

Query: 194 I---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +   GPEGG    E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 194 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|149011364|ref|ZP_01832611.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae
           SP19-BS75]
 gi|237649845|ref|ZP_04524097.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI
           1974]
 gi|237820772|ref|ZP_04596617.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147764354|gb|EDK71285.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae
           SP19-BS75]
          Length = 247

 Score = 48.5 bits (114), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  AI  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAITGLDTGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|332074131|gb|EGI84609.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA41301]
          Length = 247

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  AI  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAITGLDTGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|119962358|ref|YP_947974.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter aurescens
           TC1]
 gi|119949217|gb|ABM08128.1| putative protein of unknown function (DUF558) [Arthrobacter
           aurescens TC1]
          Length = 255

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 21/235 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +   V R+  G+ + + +G        +   G S    V+       +Q +V+ +
Sbjct: 26  GAEARHAVTVKRLTTGEPVDIADGAGVRLTGTVVDAGSST-LTVKASEVLFEEQPEVRLV 84

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
              +  K +R +  I+ + E+G+ A+ P      I R+  +       + ++   +AA+Q
Sbjct: 85  LVQALAKGDRDELAIETATELGIDAVIPWQSERAIVRWKGERAAKAHAKWQSVVTAAAKQ 144

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEK-LHAIAHIPN------ 189
                +P +        L K   D +  I+  ++   ++N L   L  +A +PN      
Sbjct: 145 ARRAWIPEVRSIVDTVALAKAVADADMAIILHED---AKNPLRTVLEELAALPNEGKPRE 201

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V +++GPEGG    E   L     VT L LG  +LRS TA  AA+ L   + G W
Sbjct: 202 VLLIVGPEGGISPREVTRLSDSGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 255


>gi|329770528|ref|ZP_08261906.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325]
 gi|328836277|gb|EGF85946.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 19/238 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKS 64
           +++ FV+    + ++ + S +  +++  V+R    D + +    + +++  I  + + + 
Sbjct: 1   MQQYFVNKNFNLNSEYELSKEDSNHIVRVMRKNINDKVFIVFNDEIKYICNIIDNNIDRV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           I    E    S   ++ +     P+K ++++Y++QK  E+G+  I      R +      
Sbjct: 61  IVEPFEKVEESNELKTKITVAIPPLKNDKIEYLLQKLTELGVFNIILFNSERNIAKIKAD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSE 175
             +  + R       AAEQ     +P +    +L+ L+    N D+   + +  E+    
Sbjct: 121 KINSKLKRWDKILKEAAEQSKRNIIPTLSYVNSLQELINTTTNMDYKV-VAYEKESHNKN 179

Query: 176 NSLEKLHAIAH--IPNVAIL--IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           N  E L A+    + N +I+   G EGG    E   L    F   +SLG RILR++TA
Sbjct: 180 N--ENLKALLKDDLNNKSIIAVFGSEGGISENEINILTKSEF-KMVSLGKRILRAETA 234


>gi|322390789|ref|ZP_08064299.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           903]
 gi|321142459|gb|EFX37927.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           903]
          Length = 247

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 19/226 (8%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSDVQYIFS 87
            ++  V+R+KE D + L+F+  DG  + +++ V      K+E  +  +   +  VQ   +
Sbjct: 23  KHMFQVMRLKEDDEVTLVFD--DG--IKRLARVVNVEARKLELIEELADNVELPVQVTIA 78

Query: 88  P--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCD 139
               K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ  
Sbjct: 79  SGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSK 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195
              +P I         L  +D   +IV A E    E      ++ L  +     +  + G
Sbjct: 139 RNLVPSITLFEKKADFLAQFDQFDRIVVAYEESAKEGEAAALIQSLTGLEAGCKLLFIFG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           PEGG    E ++  +   V    LGPRILR++TA + A++ V  + 
Sbjct: 199 PEGGLSPAEIKSFTAKGAVLA-GLGPRILRAETAPLYALSAVSVVT 243


>gi|319945702|ref|ZP_08019953.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319748062|gb|EFW00305.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNFV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199
           P I         L   D   +IV A E    E      ++ +  +     V  + GPEGG
Sbjct: 143 PSITLFEKKADFLAQLDQFDRIVVAYEESAKEGESAALVQAVSGLEKGSKVLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +        LGPRILR++TA + A++ V  + 
Sbjct: 203 LSPAEIESFEA-KGAALAGLGPRILRAETAPLYALSAVSVVT 243


>gi|168492597|ref|ZP_02716740.1| protein YqeU [Streptococcus pneumoniae CDC0288-04]
 gi|183573256|gb|EDT93784.1| protein YqeU [Streptococcus pneumoniae CDC0288-04]
          Length = 247

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 29/231 (12%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD------V 82
            ++  V+R+KE D + L+F+  DG  + +++ V       VE +     ++ D      V
Sbjct: 23  KHMFQVMRLKEDDEVTLVFD--DG--IKRLARV-----LDVEARQFELVEELDDNVELPV 73

Query: 83  QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           Q   S    K ++L+++ QK  E+G   I      ++      +     ++++    + A
Sbjct: 74  QVTISSGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGA 133

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAIL 193
           AEQ     +P I         L   D    I+ A E    E     L  A+  +   A L
Sbjct: 134 AEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKL 193

Query: 194 I---GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +   GPEGG    E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 194 LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|307707102|ref|ZP_07643899.1| RNA methyltransferase family protein [Streptococcus mitis SK321]
 gi|307617628|gb|EFN96798.1| RNA methyltransferase family protein [Streptococcus mitis SK321]
          Length = 247

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 15/224 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88
            ++  V+R+KE D + L      + L+++  V ++ +F++  +      +  VQ   +  
Sbjct: 23  KHMFQVMRLKEDDEVTLVFDDGVKRLARVLDV-EARQFEL-VEELDDNVELPVQVTIASG 80

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I    + ++      +     ++++    + AAEQ    
Sbjct: 81  FPKGDKLEFITQKVTELGASQILAFPSDWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPE 197
            +P I         L   D    IV A E    E      L+ +  +     +  + GPE
Sbjct: 141 VVPSIQLFENKADFLAQLDQFDSIVVAYEESAKEGEAAALLQAVTGLETGGKLLFIFGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG    E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 201 GGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243


>gi|290960538|ref|YP_003491720.1| hypothetical protein SCAB_61581 [Streptomyces scabiei 87.22]
 gi|260650064|emb|CBG73180.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 21/232 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQSD 81
           G +  +   V R++ G++++L +G+ G W+  +    +     +   V         +  
Sbjct: 22  GPEGRHAVSVKRLQPGEDVVLTDGR-GRWVEGVVKAAEGKDRLVVMDVGCLYEEPPAEPR 80

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAA 135
           +  + +  K +R +  ++   E+G+ AI P      IT++        + + R     A 
Sbjct: 81  LTVVQALPKGDRGELAVETMTEVGIDAIVPWAAARCITQWRGERGLKALAKWRATAREAG 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAI 192
           +Q      P +    T + +         +V AD       S ++  A A +P    + +
Sbjct: 141 KQSRRTRFPEVADAATSKQV------AALLVKADFAAVLHESGDETLATAELPAAGEIVL 194

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG   EE   L          LGP +LR+ TA  AA AL+    G W
Sbjct: 195 VVGPEGGVSPEEL-ALFGEAGAGAYRLGPSVLRTSTAGTAAGALLLGRTGRW 245


>gi|300780715|ref|ZP_07090569.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532422|gb|EFK53483.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 27/236 (11%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKD-------GEWLSKISYVGKSIRFKVEYQSR 74
           G+  G +  +   V R++ G++I+L +G          E   K S VG+ +R     Q R
Sbjct: 14  GRLDGPEGRHAVTVKRIEPGEHIMLIDGSGRTAEISVTEITGKDSLVGEVVRVDDVPQPR 73

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
            +     V  + +  K+ R +  +  +V+ G   I P I+  T           N+++ +
Sbjct: 74  PR-----VTVVQAIPKSERAELAVDLAVQGGADEIIPWISHRTIARWQGPKVAKNVEKWQ 128

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                AA+Q     +P +  P T   L +    +   V  ++   S   ++       + 
Sbjct: 129 ATAREAAKQSRRAWVPEVREPVTTNQLAELVRGHAAYVLHEDASTSIKDID-----LDVD 183

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++ +++GPEGG   +E   L  +P  + +S+GP +LR+ +AA+AA++ + A+   W
Sbjct: 184 HLYLIVGPEGGIGQKE---LAGIPAAS-ISMGPEVLRTASAALAALSAIGALTHRW 235


>gi|239917736|ref|YP_002957294.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC
           2665]
 gi|281413769|ref|ZP_06245511.1| hypothetical protein MlutN2_00947 [Micrococcus luteus NCTC 2665]
 gi|239838943|gb|ACS30740.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC
           2665]
          Length = 253

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 25/237 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
            G +  + A  +R+  G+ ++L +G      G  L+     G S+R     +  + T   
Sbjct: 25  GGPEARHAAAAMRLAPGETVILADGSGTLGHGTVLAAAPD-GVSVRLDAVAEEPAPTPA- 82

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAA 135
            +  + +  K +R    +Q +VE+G+ A+ P      I R+         +    T  AA
Sbjct: 83  -LVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWADTARAA 141

Query: 136 EQCDILT-LPFI---YPPTTLEFLLKNWDHNCQIVFA---DETCG-SENSLEKLHAIAHI 187
            +      +P +      T +  L+++ D   ++V     D   G S    E+L   A I
Sbjct: 142 AKQARRARVPAVRDHVSGTAVAGLVRD-DGGGRLVLVLHEDVEHGVSSVPAERLSEAAEI 200

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              A+++GPEGG    E E   +   V P+ LGP +LR+ TA  AA+A++Q   G W
Sbjct: 201 ---AVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253


>gi|302528840|ref|ZP_07281182.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302437735|gb|EFL09551.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 245

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 19/243 (7%)

Query: 17  CIKTQGKA--SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----GKSIRFKVE 70
            +  +G+A   G++  + A V R++ G+ ++L +G        +  V      S+   V 
Sbjct: 8   AVPAEGRALLDGEEARHAATVRRLRVGEQLVLSDGAGAMARCAVDAVEAGRAASVTLTVL 67

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-- 123
            + + +     V    +  K +R +  ++ + E G  AI P      + R+         
Sbjct: 68  ERWQEEPPALRVHVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWDDGPRGEKA 127

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           + R R    SAA+Q     +P +  P  T E        +  +V      G  + L  L 
Sbjct: 128 LARWRATARSAAKQARRAHVPAVAEPVGTRELAQLAATMSATLVL---ESGVASKLADL- 183

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           A+    ++ +++GPEGG   EE   L      T + LGP +LR+ TAA  A+  +  + G
Sbjct: 184 ALPDGGDLLLVVGPEGGITDEELALLEE-SGATTVRLGPTVLRTSTAAAVALGALGVLTG 242

Query: 243 DWY 245
            W+
Sbjct: 243 RWH 245


>gi|257055398|ref|YP_003133230.1| hypothetical protein Svir_13560 [Saccharomonospora viridis DSM
           43017]
 gi|256585270|gb|ACU96403.1| conserved hypothetical protein TIGR00046 [Saccharomonospora viridis
           DSM 43017]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 25/235 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDG--EWLSKISYVGK--SIRFKVEYQSRSQTKQSD 81
           G++ H+   V R++EG+ + L +G+ G  + ++   + G+  ++  +VE           
Sbjct: 17  GEEAHHAVTVRRLREGERLALSDGRGGLADCVAHAVHPGRNPTVELRVETTRHVSAPALR 76

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH--YNMDRVRTYTISA 134
           V    +  K +R +  ++ + E G+ A+ P      + R+         + + R    +A
Sbjct: 77  VTVAQALAKGDRGELAVETATEAGVDAVVPWRAARSVARWDDGPRGAKALAKWRATARAA 136

Query: 135 AEQCDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A+Q     +P +  P TT +   +  + +  +V   +   S   ++          + ++
Sbjct: 137 AKQARRAWVPEVTEPMTTRQLAARIAETDLALVLDGDASESFVDVD----FPEEGELLLV 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTP----LSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG   EE+ T     FV      + LGP +LR+ TAA  A+  + A+   W
Sbjct: 193 VGPEGGVAPEERAT-----FVEAGARCVRLGPTVLRTSTAATVALGALGALTARW 242


>gi|224532070|ref|ZP_03672702.1| conserved hypothetical protein [Borrelia valaisiana VS116]
 gi|224511535|gb|EEF81941.1| conserved hypothetical protein [Borrelia valaisiana VS116]
          Length = 238

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 37/163 (22%)

Query: 100 KSVEMGMGAIRPVITR-------------------------YTQNTHYNMDRVRTYTISA 134
           K + + +G IRP++ R                         Y  +  +  +    + I+ 
Sbjct: 73  KKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKHLIAG 132

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENSLEKLHAIAHIPNV 190
           A Q  +  LP I        ++KN   + Q +    F  +    +NS + L  I  I N 
Sbjct: 133 AMQGGVTYLPKIK-------IMKNLKDSLQYIKQENFEIKILLEKNSKKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            I++GPE G+  +EK+ +    F +P ++   ILR++TA +AA
Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SPYNISSNILRTETAIIAA 227


>gi|112789921|gb|ABI21599.1| Smu10A [uncultured organism]
          Length = 185

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 11/163 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTIS--AAEQCDILT 142
           K +R +  ++ + E G+ A+ P      + R+      +  R+R    +  AA+Q     
Sbjct: 27  KGDRGELAVELATEAGVDAVVPWQASRCVARWPDAAKADKGRLRWQAAASEAAKQSRRYV 86

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P + P  +   +          +   E+  +  +   L A     ++ +++GPEGG   
Sbjct: 87  VPEVLPAASTAGVAALVGQAALALVLHESATASLASTALPATG---DLVLIVGPEGGIAG 143

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           +E     ++  +  + LGP++LR+ TAA  A+  +  + G W 
Sbjct: 144 DELAAFEAVGAIA-VRLGPQVLRTSTAAAVALGAIGVLTGRWV 185


>gi|269114999|ref|YP_003302762.1| hypothetical protein MHO_2250 [Mycoplasma hominis]
 gi|268322624|emb|CAX37359.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 13/151 (8%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD----RVRTYTISAAEQCDILTLP 144
           IK N  +  +QK+VE+G   I    ++Y   ++ N D    R       A +Q     +P
Sbjct: 76  IKQNHFEIALQKAVELGAYEIYVFQSQYVDKSNLNFDSKKQRYEKIIFEACQQSFRNYIP 135

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            ++ P +   L       C +   ++    EN  +    I    +  I++GPEGG+  +E
Sbjct: 136 RLHDPISFSEL-------CVLDIKNKVLAYENK-KNNELIKDCQDALIIVGPEGGFSQQE 187

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +   S   V  +SL   ILR++TA +  ++
Sbjct: 188 IDYAISCN-VQVVSLTKTILRAETALIYMLS 217


>gi|148997824|ref|ZP_01825388.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575040|ref|ZP_02721003.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|307068392|ref|YP_003877358.1| hypothetical protein SPAP_1772 [Streptococcus pneumoniae AP200]
 gi|147756323|gb|EDK63365.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578834|gb|EDT99362.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|306409929|gb|ADM85356.1| Uncharacterized protein conserved in bacteria [Streptococcus
           pneumoniae AP200]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|225859537|ref|YP_002741047.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           70585]
 gi|225720580|gb|ACO16434.1| protein YqeU [Streptococcus pneumoniae 70585]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A++ +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVSGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E E+  +   V  + LGPRILR++TA + A+
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYAL 236


>gi|149002075|ref|ZP_01827029.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP14-BS69]
 gi|303254708|ref|ZP_07340810.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455]
 gi|303258717|ref|ZP_07344697.1| hypothetical protein CGSSp9vBS293_06299 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261881|ref|ZP_07347827.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263744|ref|ZP_07349666.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae
           BS397]
 gi|303265722|ref|ZP_07351621.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae
           BS457]
 gi|303268575|ref|ZP_07354367.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae
           BS458]
 gi|147759884|gb|EDK66874.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP14-BS69]
 gi|301802477|emb|CBW35235.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302598420|gb|EFL65464.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455]
 gi|302636964|gb|EFL67453.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640218|gb|EFL70673.1| hypothetical protein CGSSpBS293_06299 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641854|gb|EFL72209.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae
           BS458]
 gi|302644849|gb|EFL75097.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae
           BS457]
 gi|302646782|gb|EFL77007.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae
           BS397]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|322373766|ref|ZP_08048301.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150]
 gi|321277138|gb|EFX54208.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 22/239 (9%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V+ P+ IK +     D   ++ +V+R+ E D ++L      + L++++     +   +E 
Sbjct: 10  VENPVIIKDK-----DTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHVFEVIED 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMD 125
            + +      V       K ++L+ + QK+ E+G  AI        V+    +      D
Sbjct: 65  LTDNVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWAFPADWSVVKWDGKKLAKKED 124

Query: 126 RVRTYTISAAEQCDILTLPFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSL---- 178
           ++    + AAEQ     +P +       EFL  L N+D   +I  A E       L    
Sbjct: 125 KLAKIALGAAEQSKRNHVPEVRLFEEKGEFLSELANFD---KIFIAYEETAKAGELATLA 181

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +L  + H   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ V
Sbjct: 182 RELAQVEHGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSSV 239


>gi|168486375|ref|ZP_02710883.1| protein YqeU [Streptococcus pneumoniae CDC1087-00]
 gi|183570623|gb|EDT91151.1| protein YqeU [Streptococcus pneumoniae CDC1087-00]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               E E+  +   V  + LGPRILR++TA + A++
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALS 237


>gi|148994979|ref|ZP_01823957.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488515|ref|ZP_02712714.1| protein YqeU [Streptococcus pneumoniae SP195]
 gi|147926916|gb|EDK77963.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572849|gb|EDT93377.1| protein YqeU [Streptococcus pneumoniae SP195]
 gi|332072601|gb|EGI83084.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA17570]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLTQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|328945350|gb|EGG39503.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 250

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+KE + + L      + L+++   G+     VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKEDEQVTLVFDDGVKRLARVLDPGQQSLEIVEELADNTELPVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  A+      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGACALWGFPAEWSVAKWDGKKLAKKSEKLEKIAQGAAEQSKR 139

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGP 196
             +P +         L       +I+ A E    E      +  L  +     V  + GP
Sbjct: 140 NLIPEVRLFDKKADFLAALAAFDRIIVAYEESAKEGETAALVRALSGLETGAKVLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           EGG  S+E    H    V+   LGPRILR++TA + A+  V  +
Sbjct: 200 EGGLSSDEIAAFHQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242


>gi|326333962|ref|ZP_08200192.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium
           Broad-1]
 gi|325948241|gb|EGD40351.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium
           Broad-1]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 18/233 (7%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKV-EYQSRSQTKQ 79
           + SGD+ H+   V R++ G+ ++L +G  GE ++        KS+  +V E        +
Sbjct: 21  EVSGDEGHHAVVVRRLRVGEEVVLTDGA-GEGVTGTITQTTKKSMTVRVDEIIIGDAPPE 79

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTIS 133
             +  + +  K +R +  ++   E+G        A R V     +    ++ R R     
Sbjct: 80  PSLTVVQALPKGDRGELAVEMVTEIGAARIVPWAAARSVAVWKGERAVKSLARWRATARE 139

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           AA+Q   L  P + P  T + ++   +     V   E    E +L  L A+  I   +IL
Sbjct: 140 AAKQSRRLWHPEVEPLATTDAVVAMIEAADVAVVLHE----EGTL-PLGAVPVIDEGSIL 194

Query: 194 I--GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  GPEGG   +E   L      T + LG  +LR+ TA VAA A + A    W
Sbjct: 195 VVVGPEGGLTVDEI-ALFEKAGATTIRLGGEVLRTSTAGVAACAALLARTRRW 246


>gi|169834515|ref|YP_001695156.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168997017|gb|ACA37629.1| conserved hypothetical protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|124514677|gb|EAY56189.1| conserved protein of unknown function [Leptospirillum rubarum]
          Length = 282

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 20/225 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SDVQYIF 86
            +L   LR KEGD+    + + G          +    K++ +S   +++     +  +F
Sbjct: 35  RHLLSSLRAKEGDSFPFSDPETGTIYRGTLVSREPCSLKLDIESGRISRKHFFPRLGIVF 94

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTI--SAAEQCD 139
           SP+K +     +  +V  G+  ++PVI+     R+ +   +     R   I    ++   
Sbjct: 95  SPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWPEGDGWASKAKRFAGIVREKSQLAG 154

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------NVAI 192
             T   I  P +L   LKN   +  + F +++ G+ + ++ + ++   P        +  
Sbjct: 155 RATRMRIASPLSLRESLKNRASDVFLWFDEDSAGALDPMKAIDSLRRFPIQFWEQKTIWS 214

Query: 193 LIGPEGGYHSEEKETLHSLP---FVTPLSLGPRILRSDTAAVAAM 234
           ++GPEGG+   +++ L        V  +SLG RI   + A + A+
Sbjct: 215 VVGPEGGWSPRDRDCLRDPEEKGSVFRISLGERIFSGEMALLTAI 259


>gi|221232521|ref|YP_002511674.1| hypothetical protein SPN23F_17940 [Streptococcus pneumoniae ATCC
           700669]
 gi|298230706|ref|ZP_06964387.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255499|ref|ZP_06979085.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503511|ref|YP_003725451.1| hypothetical protein HMPREF0837_12009 [Streptococcus pneumoniae
           TCH8431/19A]
 gi|220674982|emb|CAR69559.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239106|gb|ADI70237.1| protein of hypothetical function DUF558 [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|118466945|ref|YP_881243.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium 104]
 gi|118168232|gb|ABK69129.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 253

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 17/216 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
            GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +V  +         V 
Sbjct: 21  GGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRARVLERWTVAPPNPPVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
            + +  K+ R +  ++ + E G        A R V   +       + R R    +AA Q
Sbjct: 81  VVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDKGLRRWRAVAKAAARQ 140

Query: 138 CD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH--AIAHIPNVAI 192
                I T+  +    +L   +++      +V A      E++ ++L    +A   ++ +
Sbjct: 141 SRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALH----ESATDRLTDVPVAQAKSLFL 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +IGPEGG   +E   L     ++ + LGP++LR+ T
Sbjct: 197 VIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231


>gi|15901610|ref|NP_346214.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           TIGR4]
 gi|111657308|ref|ZP_01408070.1| hypothetical protein SpneT_02001479 [Streptococcus pneumoniae
           TIGR4]
 gi|116515693|ref|YP_817025.1| hypothetical protein SPD_1572 [Streptococcus pneumoniae D39]
 gi|149006564|ref|ZP_01830263.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae
           SP18-BS74]
 gi|14973278|gb|AAK75854.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
 gi|116076269|gb|ABJ53989.1| conserved hypothetical protein TIGR00046 [Streptococcus pneumoniae
           D39]
 gi|147761862|gb|EDK68825.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae
           SP18-BS74]
 gi|332072939|gb|EGI83420.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA17545]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|148990495|ref|ZP_01821636.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924253|gb|EDK75349.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 247

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|15903649|ref|NP_359199.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           R6]
 gi|182684729|ref|YP_001836476.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14]
 gi|15459275|gb|AAL00410.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|182630063|gb|ACB91011.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 87  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 146

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 147 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 206

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 207 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 247


>gi|123965976|ref|YP_001011057.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200342|gb|ABM71950.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. MIT 9515]
          Length = 259

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 15/233 (6%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           K + ++ HYL  V+R+K G  I + NG+   W +K           ++     Q K+   
Sbjct: 23  KLTKEEAHYLNKVMRIKIGREIFITNGQGSLWKAKKLEQNFLEINNIDNPYFVQEKEKVS 82

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT--RYTQNTHYNMDRVRTYTI--SAAEQC 138
             I   +  N  + +++   E+G+  I+P+ +  +   N+++    +R  +I   A EQ 
Sbjct: 83  LGIAVVVPKNGFEDILKMCTEIGIDLIQPLFSERQVKNNSNFLKRNIRWNSIINEAVEQS 142

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENSLEKLHAIAHIPNVAIL-- 193
           + L  P I     L   + + D    I  +   D++  + N   K        N  +L  
Sbjct: 143 ERLWRPLILGGVNLIDWIDSRDSKDIISISITRDDSSENLNHWLKRKQNLLKKNGGVLWN 202

Query: 194 -IGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +GPEGG+   E E    + + FV    L   ILR+ TA V A +++     D
Sbjct: 203 VVGPEGGWSRNEIEFFLKNKISFV---KLSETILRTSTATVNATSILNQWRND 252


>gi|218249710|ref|YP_002374593.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
 gi|226322026|ref|ZP_03797551.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
 gi|218164898|gb|ACK74959.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
 gi|226232616|gb|EEH31370.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           I+ A Q  I  LP I     L+  LK      Q  F  +    +NS + L  I  I N A
Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAA 186

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           I++GPE G+  +EK+ +    F +P S+    LR++TA +AA
Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227


>gi|195941801|ref|ZP_03087183.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a]
 gi|216264321|ref|ZP_03436313.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221217508|ref|ZP_03588979.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223889140|ref|ZP_03623729.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224533029|ref|ZP_03673635.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|225549337|ref|ZP_03770310.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|225549765|ref|ZP_03770730.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|226320766|ref|ZP_03796322.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|215980794|gb|EEC21601.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221192786|gb|EEE19002.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223885389|gb|EEF56490.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224512023|gb|EEF82418.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|225369725|gb|EEG99173.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|225370195|gb|EEG99635.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|226233821|gb|EEH32546.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|312148337|gb|ADQ30996.1| conserved hypothetical protein [Borrelia burgdorferi JD1]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           I+ A Q  I  LP I     L+  LK      Q  F  +    +NS + L  I  I N A
Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAA 186

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           I++GPE G+  +EK+ +    F +P S+    LR++TA +AA
Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227


>gi|312149666|gb|ADQ29737.1| conserved hypothetical protein [Borrelia burgdorferi N40]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           I+ A Q  I  LP I     L+  LK      Q  F  +    +NS + L  I  I N A
Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAA 186

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           I++GPE G+  +EK+ +    F +P S+    LR++TA +AA
Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227


>gi|227488406|ref|ZP_03918722.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543018|ref|ZP_03973067.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091620|gb|EEI26932.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181240|gb|EEI62212.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQ 83
           SG +  +   V R+  G+ ++L +G  G  +  ++   GK +   V+  SR +    + Q
Sbjct: 20  SGPEGRHAVTVKRIGPGEIVMLADGHGGRSVGTVTATQGKDV-LHVDVTSREEVPPPNPQ 78

Query: 84  Y--IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136
              I +  K+ R +  +    + G   I P      I ++        +      ++AA+
Sbjct: 79  VTVIQALPKSERQELTVDLLTQGGADVIVPWEAERCIAKWQPKKAKKWE---NAAVAAAK 135

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q     LP I  P  L+  L   D    +V  +E       ++    ++ +  +A++IGP
Sbjct: 136 QSRRARLPLITKPNALDEALDGVD--LVLVLHEEASVPLAEVD----LSQVRRIALVIGP 189

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           EGG    E E   +     P+ LGP +LR+
Sbjct: 190 EGGLSPAEVERFRAA-GARPVLLGPEVLRT 218


>gi|29832115|ref|NP_826749.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces avermitilis
           MA-4680]
 gi|29609233|dbj|BAC73284.1| putative protein involving differentiation [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 19/232 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQT--KQSD 81
           G +  +   V R++ G++++L +G  G W   +     GK  R  V+  S ++   ++  
Sbjct: 23  GAEGRHAVSVKRLRPGEDVVLTDGA-GRWADCVVLGTEGKD-RLIVQMDSVTEEPPEEPR 80

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAA 135
           +  + +  K +R +  ++   E G+ AI P      IT++  +     + + R+    A 
Sbjct: 81  ITVVQALPKGDRGELAVETMTETGVDAIVPWAAARCITQWKGDRGQKALAKWRSTAREAG 140

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAI 192
           +Q   +  P +    T + +              E   +E+  E   A A +P   ++ +
Sbjct: 141 KQSRRVRFPEVAGAMTSKQVAALLATADLAAVLHED--TEHGTEPF-ATAQLPTSGSIVL 197

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG   EE E    +   T   LG  +LR+ TA   A AL+ A  G W
Sbjct: 198 VVGPEGGISPEEIELFTGVGAKT-FHLGRTVLRTSTAGTVATALLLARTGRW 248


>gi|195943133|ref|ZP_03088515.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a]
          Length = 231

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 42/228 (18%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           YH+L +V R+K+GD  NILL   KD E   S+I  +G + I+F      + +    ++  
Sbjct: 24  YHHLINVRRLKKGDKLNILL---KDKELRASEIVKIGSNFIKFTTNKIDKIEKNNFEISI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             S +K  ++D ++++ VE+G+  I      R V      N    + R       A +Q 
Sbjct: 81  FISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDISNASAKILRFSKIIDEALKQS 140

Query: 139 DILTLP-------FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
               +P       F Y P +         H   ++           L K  +  +   + 
Sbjct: 141 GNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMI-----------LSKNESFDNFAKIG 189

Query: 192 ILIGPEGGYHSEE-----KETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           I+IGPEG +   E     ++  + + F TP      ILR+DTA + ++
Sbjct: 190 IIIGPEGCFSESEIVFFKEKGFNFIRFNTP------ILRADTAIIYSL 231


>gi|123968258|ref|YP_001009116.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. AS9601]
 gi|123198368|gb|ABM70009.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. AS9601]
          Length = 257

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 19/227 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80
           S ++ HYL  V+R+K G  I + NG+   W  K + V       I+ K  Y  + Q  + 
Sbjct: 25  SKEEAHYLNKVMRIKNGKKIFIANGEGSLW--KATKVKNDCLEIIKSKKPYLIQEQ--EI 80

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYTI--SAAE 136
            +  I   I  +  + +++   E+G+  I+P+ +    N + N  R  +R   I   A E
Sbjct: 81  HLLGIAVVIPKSGFEDILKMCTEIGIDYIQPLFSERQVNKNLNFSRKLLRWNLIINEAVE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA---DETCGSENS-LEKLHAIAHIPNVAI 192
           Q + L  P I     +   LK+ D+  ++  +   +ET    N  L K     +      
Sbjct: 141 QSERLWKPSILNGMDIIEWLKSRDNQERLSISITREETLYDLNQWLRKQQEFGNKKGGIF 200

Query: 193 --LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +IGPEGG+  +E +       +T + L   ILR+ TA++ A +++
Sbjct: 201 WNVIGPEGGWSDKEIDFFKK-NNITFVKLSDTILRTSTASINASSIL 246


>gi|256847109|ref|ZP_05552555.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715773|gb|EEU30748.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 17/213 (7%)

Query: 30  HYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS- 87
           H+   VLR + G    L+F   D E + + S +   I      +   Q  +  V  I + 
Sbjct: 25  HHFITVLRAEPGTQCELVF---DNEHVYRASLIDSKIAQVEVLEDLQQNAELPVHPILAC 81

Query: 88  --PIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
             P    + + ++QK+ E+G        A R V    T      + R++     AAEQ  
Sbjct: 82  GLPKTKGKPELIVQKATELGADEVIFFEAARSVSHWATNKQTKKIARLQKIANGAAEQSH 141

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILIGP 196
              LP I     L  +L+      ++V  +E+   G  ++L   L        +  + GP
Sbjct: 142 RNRLPQISYLPDLATVLQQTSAEQKVVAWEESAKQGETSALATVLQQTKSDDRMLAIFGP 201

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           EGG  +E++ T      V P+ LGPRILR++TA
Sbjct: 202 EGGL-TEDEITQMQAAGVVPVGLGPRILRTETA 233


>gi|237721383|ref|ZP_04551864.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449179|gb|EEO54970.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 232

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  Q 
Sbjct: 9   IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQE 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +   +++      +R+    ISA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCHFSERKVIKTERIEKILISA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +      +  ++  +   Q   A    G +  L+  + +    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GPEG +  EE +      FV P+SLG   LR++TAA+ A
Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLGKSRLRTETAALVA 223


>gi|323692756|ref|ZP_08106984.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323503198|gb|EGB19032.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 10/220 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           +G   +++ +VLRMK G+ +L+     G++L     + +  I F +  +S S+ +     
Sbjct: 19  TGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKILFGILEKSESEMELPARI 78

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAAE 136
           ++F  + K ++++ +IQK+VE+G   I PV T+       ++     + R    + SAA+
Sbjct: 79  HLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSKKEEARIKRWNAISESAAK 138

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q     +P +      +  L+   D   +++  +   G E +   L       ++AI IG
Sbjct: 139 QSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEETRRLLQTAEAGMDIAIFIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           PEGG+  EE         V+ +SLG RILR++TA +  ++
Sbjct: 199 PEGGFEEEEIRQAGERG-VSSVSLGRRILRTETAGLCVLS 237


>gi|50955092|ref|YP_062380.1| hypothetical protein Lxx14630 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951574|gb|AAT89275.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 241

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 23/244 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD----GEWLSKISYVGKSIRFK 68
           D    I  +   +G +  +   V R + G+ IL+ NG+     GE L      G  +   
Sbjct: 9   DLDAAIGDRLTLTGPEARHAVTVNRTRPGERILIGNGRGLVAAGEVLV---ATGSELTID 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN 123
           V    R Q ++  +  + +  K +R +  IQ + E+G  A+ P      ++R+ + T   
Sbjct: 66  VAALDRIQRREPAITLVQALAKGDRDERAIQAATELGADAVIPWAAARSVSRW-EGTKIA 124

Query: 124 MDRVRTYTI--SAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
             R R  TI   A +Q      P +    TT +       H  +++  + + G    L  
Sbjct: 125 KGRERWATIVREAGKQSLRPWTPEVGELSTTRQIAALAVTH--RVLVLEPSAG--GRLTD 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +   A    +A+++GPEGG    E +   +      L LG  ILR+ TA  AA+A++ A 
Sbjct: 181 VTPDAR--PLALVVGPEGGIDPAELDVFRA-AGAELLRLGDTILRTSTAGPAALAVLSAA 237

Query: 241 CGDW 244
              W
Sbjct: 238 TRRW 241


>gi|295396065|ref|ZP_06806248.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971006|gb|EFG46898.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 259

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            G  N+ +   +   I  + +++GPEGG    E + L S    T + LGP ILR+ TA  
Sbjct: 187 LGQGNTTQDNISQGDIDQIVVIVGPEGGITPAEIDALVSAGARTAV-LGPTILRASTAGP 245

Query: 232 AAMALVQAICGDW 244
            A+A+VQ + G W
Sbjct: 246 VALAIVQTLLGRW 258


>gi|325697805|gb|EGD39689.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK160]
          Length = 250

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 19/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84
           D   ++  V+R+K GD + L+F+  DG  + +++ V  S    +E  +  +   +  VQ 
Sbjct: 20  DTAKHMFSVMRLKAGDQVTLVFD--DG--IKRLAQVLDSGHQSLEILEELADNTELPVQV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    K ++L+++ QK+ E+G  A+      ++      +      +++      AAE
Sbjct: 76  TIASGFPKGDKLEFITQKATELGACALWAFPADWSVAKWDGKKLGKKSEKLEKIAQGAAE 135

Query: 137 QCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI---PNVAI 192
           Q     +P +        FL    D +  IV  +E+     S     A++ +     V  
Sbjct: 136 QSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESAALFRALSGLEAGAKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + GPEGG   +E +       V+   LGPRILR++TA + A+  V  +
Sbjct: 196 IFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242


>gi|203284273|ref|YP_002222013.1| uncharacterized protein conserved [Borrelia duttonii Ly]
 gi|201083716|gb|ACH93307.1| uncharacterized protein conserved [Borrelia duttonii Ly]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 19/217 (8%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           YHYL +V R++ GD + +  GK     S+I S     IRF        + +   +    S
Sbjct: 24  YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFAIDIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RVRTYTI--SAAEQCDI 140
            +K  +LD  +++ VE+G+ +I  ++         +MD     ++R   I   A +Q   
Sbjct: 84  NLKGRKLDLSLRQVVEIGVNSIN-IVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGN 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSENSLEKLHAIAHIPNVAILIGPEG 198
             +P I        +  +   N  + ++  D     EN       I+    + ILIGPEG
Sbjct: 143 AQIPSINFYNDFFSIPYSSSVNYYVAYSKGDFLHLGEN-------ISVFGKIGILIGPEG 195

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +   E +    L F   +     ILR+DTA V A+A
Sbjct: 196 CFLKLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231


>gi|330469600|ref|YP_004407343.1| hypothetical protein VAB18032_28361 [Verrucosispora maris
           AB-18-032]
 gi|328812571|gb|AEB46743.1| hypothetical protein VAB18032_28361 [Verrucosispora maris
           AB-18-032]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 29/220 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G + H+ A V R++ G+ +LL +G+ G   + +S VG+     +E  SR     ++ + +
Sbjct: 21  GPEGHHAATVQRLRVGEELLLGDGRGGTAAAVVSAVGRGT-LDIEITSRGYVDAANPRLV 79

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRTY------TISAAE 136
                 K +R +  +Q   E G+  I P     +    +  DR VR           AA+
Sbjct: 80  VVQGIAKGDRGELAVQAMTEAGVDEIVPWAAGRS-VAQWRGDRGVRARDKWVATAREAAK 138

Query: 137 QCDILTLPFIY-----PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-- 189
           Q     LP +      P  ++   +         V  +E      ++E       +P+  
Sbjct: 139 QARRAWLPVVAGAPDEPTASVARRISG--AAAGYVLHEEATDRLTTVE-------LPDQG 189

Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            + +++GPEGG    E  T        P+ LGP +LR+ T
Sbjct: 190 EIVLVVGPEGGITPAELATFQQA-GAHPVRLGPSVLRTST 228


>gi|332199792|gb|EGJ13867.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA41317]
          Length = 247

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI---GPEGG 199
           P I       +FL +    +  IV  +E+     +   L A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDFIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V  + LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSALSVLV 243


>gi|294812559|ref|ZP_06771202.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440988|ref|ZP_08215722.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325158|gb|EFG06801.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 24/233 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           G +  +   V R+  G+ I+L +G+  G   + +   GK ++  +V         +  + 
Sbjct: 24  GPEGRHAVSVRRLTSGEEIVLTDGQGRGAAGAVLRTEGKDTLVVEVRELRDEPAPRPRIT 83

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAEQ 137
            + +  K +R +  ++   E G+  I P      IT++  +    ++ + R     A +Q
Sbjct: 84  VVQALPKGDRGELAVETMTETGVDTIVPWSAARCITQWRGERGAKSLAKWRATAREAGKQ 143

Query: 138 CDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVA 191
              L  P +    T   +  LL   D    +         E   E L A A +P   ++ 
Sbjct: 144 SRRLRFPEVADAATTKQVAALLAEADFAAVL--------HEEGAEAL-ATAELPAEGSIV 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG   EE +   +     P  LG  +LR+ TA  A +AL+    G W
Sbjct: 195 LVVGPEGGVSPEELDAFAAA-GARPFRLGHSVLRTSTAGTAGVALLLGRTGRW 246


>gi|168494311|ref|ZP_02718454.1| protein YqeU [Streptococcus pneumoniae CDC3059-06]
 gi|225855212|ref|YP_002736724.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           JJA]
 gi|183575734|gb|EDT96262.1| protein YqeU [Streptococcus pneumoniae CDC3059-06]
 gi|225723849|gb|ACO19702.1| protein YqeU [Streptococcus pneumoniae JJA]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199
           P I         L   D    I+ A E    E      L+ +  +     +  + GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGSKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|51245558|ref|YP_065442.1| hypothetical protein DP1706 [Desulfotalea psychrophila LSv54]
 gi|50876595|emb|CAG36435.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 20/228 (8%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT----KQSDVQYIF 86
           ++  VLR + GD + +     G  ++KI  +     F V+   + +T    ++  +  + 
Sbjct: 26  HIVKVLRSQVGDRVRVGVIDGGRGMAKIVAIKPKFPFSVDLDIQLETTLPEEKPVIDLVL 85

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDIL 141
           +  +   L  ++ +   +G+G I  + ++  + + +       ++ R + +   EQ    
Sbjct: 86  ALPRPIMLRRILSQVTSLGVGRIFLIDSQRVEKSFWQASLLQNEQYREHLLIGLEQAVAT 145

Query: 142 TLP--FIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLH----AIAHIPNVAI 192
            LP   IYP       E L+K+ D    ++ AD   G+    E L     ++     V +
Sbjct: 146 RLPEVSIYPKFKGFMDELLVKDLDDYSALIVAD-PAGTNTFSEALRQAGGSLRQGGRVLL 204

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +GPEGG+   E +      F +  ++G RIL+ DTA +A  + + A+
Sbjct: 205 CVGPEGGWVPAEVDQFSGCGF-SICTIGERILKVDTAVIALHSRIMAL 251


>gi|325970602|ref|YP_004246793.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
 gi|324025840|gb|ADY12599.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 30  HYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
            ++  +LR+KEG++    ++  GK    L+ +    + I F+   +     K   V  + 
Sbjct: 23  QHICKILRLKEGESFQAGIINVGKGTATLTALEK--ERITFRFVLEETESAKLYPVTLLV 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQ---C 138
           S ++   +  ++++SV +G+  I    T      Y Q T Y      +  +  A Q   C
Sbjct: 81  SQVRPICMRRILRESVSLGVERIILCTTETGEKSYAQATLYTSGEYHSILLDGAMQSGKC 140

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
            +  + F     +   LL   + + Q +  D     E++    +A+ H  +V + IG E 
Sbjct: 141 GVSAVQFAPSVASAMHLL---EQDSQRIVLDNV--RESTSLARYAL-HASSVVLAIGGER 194

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G+   E+ TL  L   +  SLG RILR++TA  A +A++
Sbjct: 195 GFTDNER-TLFDLNGFSFASLGSRILRTETACSAGLAVL 232


>gi|299148609|ref|ZP_07041671.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23]
 gi|298513370|gb|EFI37257.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23]
          Length = 232

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  Q 
Sbjct: 9   IQKSNELPEEEAQHCIRVLRLSIGDEITLTDGKGDFYKAEITVATNKRCFVNIKETIFQE 68

Query: 78  K--QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +      +  ++  +   Q   A    G +  L+  + +    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLK--NVLKPGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           GPEG +  EE +      FV P+SL    LR++TAA+ A
Sbjct: 186 GPEGDFSEEEVKKAIERGFV-PISLSKSRLRTETAALVA 223


>gi|269218584|ref|ZP_06162438.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211695|gb|EEZ78035.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ 83
           +G + H+ A V R   G+ I + +G+ G     +  V K  +  +V    R       + 
Sbjct: 64  AGPEGHHAATVKRASPGEEIDVVDGRGGRARCAVVGVSKGEVELEVLGFEREPDPSPRIT 123

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-VITRYTQNTHYNMDRVR----TYTISAAEQC 138
            + +  K +R D  ++ + E G+  I P    R   N     ++ R    +  ++A++Q 
Sbjct: 124 LLQALAKGSRDDQAVETATEYGVWRIVPWASARAVANWKGKEEKARRRWESIVLAASKQS 183

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPNVAILIGPE 197
               +P +    T    L+        +     C  E  +    A +    N+ I++GPE
Sbjct: 184 RRSWVPEVLDVCTTPQALRLASAEGADLL---VCHEEADMPIARAGLQGSKNLWIVVGPE 240

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTA---AVAAMALVQAICG 242
           GG   EE E+   +   T L L P +LRS +A   AVAA++ ++   G
Sbjct: 241 GGLTQEEIESFERIGGRTVL-LSPNVLRSSSAGPFAVAALSGMRGSAG 287


>gi|332298871|ref|YP_004440793.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
 gi|332181974|gb|AEE17662.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
          Length = 286

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 48/259 (18%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSI---RFKVEYQSRSQT 77
           +G  + YL +VLR++  D+ L      GE     ++++   G ++   R     +    T
Sbjct: 19  TGKDFRYLRNVLRLQP-DDTLDVRLSGGELCRMRVAEVKAAGSALVLERCGARSEGARAT 77

Query: 78  KQSDVQ-----------------YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
            ++ V                  + F P K  ++D +++++ E G+  I PV    +Q +
Sbjct: 78  AETGVPAGAIEGADGGVRAPLWLFQFMP-KAQKMDLIVRQAAETGVAVIVPVRGARSQKS 136

Query: 121 HYNMDRVRTYTI--SAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCG 173
                R R   I   A +Q        +  P  L+  L+ W   C      +   +E+ G
Sbjct: 137 DCIERRERWQRIVREARQQSGSPVETTVAEPLDLDGALRLWSGRCGARPCAVALYEESAG 196

Query: 174 ------------SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
                       +  + EK    A     A+ +G EGG   +E + L    F  P+    
Sbjct: 197 CLPLHSCAARMCASGTSEK--PTAPCTAAALAVGCEGGLSPDEIDVLQRAGFA-PVHFDT 253

Query: 222 RILRSDTAAVAAMALVQAI 240
            ILR++TAA+  +A +Q I
Sbjct: 254 NILRTETAALYGIAALQTI 272


>gi|225552017|ref|ZP_03772957.1| conserved hypothetical protein [Borrelia sp. SV1]
 gi|225371015|gb|EEH00445.1| conserved hypothetical protein [Borrelia sp. SV1]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILT 142
           PI   R+   I++   +G+  I    T  T+ ++ N      +  + + I  A Q +I  
Sbjct: 84  PIVAKRI---IKELASIGIYKIFFFNTELTEKSYLNSKIFKNNDFKKHLIDGAMQGEITY 140

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP I     L+  LK   +  Q  F  +    +NS + L  I  I N AI++GPE G+  
Sbjct: 141 LPKIKIMKNLKDSLK---YIQQENFEIKILLEKNSEKNLIDIEQINNAAIIVGPERGFTE 197

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +EK+ +    F +  S+    LR++TA +AA
Sbjct: 198 KEKQLISQYNF-SSYSISTNTLRTETATIAA 227


>gi|307719330|ref|YP_003874862.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM
           6192]
 gi|306533055|gb|ADN02589.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM
           6192]
          Length = 190

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           Y ++T +         +  AEQ     +P +    +LE  +       + V  DE  G  
Sbjct: 69  YLESTLWKGGEWERCLVEGAEQGVTTRVPEVVRVRSLEEGVGVCGEGVRYV-CDEAVGEG 127

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                   +A      + +GPE G+  EE+  L    FV  LSLGPR+LR++ A   A+ 
Sbjct: 128 GR------VARAGRYVVAVGPERGWTEEERRVLAEEGFVR-LSLGPRMLRAEVACHVAVG 180

Query: 236 LVQAICGDW 244
            V    G W
Sbjct: 181 RVAEGAGWW 189


>gi|167740222|ref|ZP_02412996.1| hypothetical protein Bpse14_19318 [Burkholderia pseudomallei 14]
          Length = 148

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 29/125 (23%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++      
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARL------ 69

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R    + D    F P +                +++D++I+K+VE+G+ A+
Sbjct: 70  ----VEIDKRGALARIDA---FEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 122

Query: 110 RPVIT 114
            P+ T
Sbjct: 123 APLST 127


>gi|328953124|ref|YP_004370458.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453448|gb|AEB09277.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS-DV 82
           S  + H+L  V+R+  GD + + +G    + ++I S    + R ++  +     + S  +
Sbjct: 36  SPSESHHLIRVVRLAVGDRVEVSDGCGRIFEAEILSLEPTAARLRLLNELSVGIESSLKI 95

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTISAAEQ 137
               + ++    D +I++  E+G+  + P      + R        + R +     A + 
Sbjct: 96  TLGLALVRAEIFDSLIRQVTELGIYRLVPFTSTRSLVRPGGWKKSRLLRWQRLAQEALKS 155

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILI 194
              L LP I PP      L       +++F +E    +    + H +A  P    +  LI
Sbjct: 156 SQRLILPEIDPPVDFPDALIG-PEEVKLMFWEE----QRQAHRPHDLAAWPRPRTIRALI 210

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG+ + E +T     F   L LGPR LR +TAA+AA+A++Q   GD
Sbjct: 211 GPEGGFTAAEADTARQAGFNL-LGLGPRRLRVETAALAAVAVLQYTWGD 258


>gi|167817439|ref|ZP_02449119.1| hypothetical protein Bpse9_20039 [Burkholderia pseudomallei 91]
          Length = 126

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDK- 74

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK----TNRLDYMIQKSVEMGMGAIRPV 112
            R  +      +  +++  Y  +  +     +++D++I+K+VE+G+ A+ P+
Sbjct: 75  -RGALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPL 125


>gi|206602521|gb|EDZ39002.1| Conserved protein of unknown function [Leptospirillum sp. Group II
           '5-way CG']
          Length = 287

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQ-SDVQYI 85
            +L   LR KEGD+    + + G  + + + V +   S++  V+ +  ++T     +  +
Sbjct: 35  RHLLSSLRAKEGDSFPFSDPETGT-IYRGTLVSREPCSLKLVVDSEHATRTHFFPRLGIV 93

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTI--SAAEQC 138
           FSP+K +     +  +V  G+  ++PVI+     R++++  ++    R   I    ++  
Sbjct: 94  FSPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWSESEGWSSKAKRFAGIVREKSQLA 153

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------NVA 191
              T   I  P +L+  LKN   +  + F ++  G+ + ++ + ++            + 
Sbjct: 154 GRTTRMHIASPLSLKESLKNRSSDVFLWFDEDPVGALDPMKVIDSLRRFSLQFWEQKTIW 213

Query: 192 ILIGPEGGYHSEEKETLHSLP---FVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            ++GPEGG+  ++++ L        V  +SLG R+   + A +A++  +    G
Sbjct: 214 SVVGPEGGWSPKDRDCLREPEEKGSVFRVSLGERVFSGEMALLASILFLGTFLG 267


>gi|291287910|ref|YP_003504726.1| hypothetical protein Dacet_2007 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885070|gb|ADD68770.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 233

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 16/205 (7%)

Query: 31  YLAHVLRMKEGDNIL--LFNGKDGEW-LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           ++ +VL+  EG+ I   + NG+ G+  +  IS  G ++ F+ E   ++  +  DV  I +
Sbjct: 25  HIRYVLKSAEGETIKAGILNGEIGKAVIEDISDSGVTVSFQPE---KAPPEACDVSLILA 81

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQCDILT 142
             +      ++   V  G+  +  + T      Y Q+ + + + +  Y + A  QC    
Sbjct: 82  LPRPKAFRRILFGIVTAGVKDVHVINTWRVEKSYWQSPYLSDENINKYCLEALMQCRDTV 141

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I+      F    ++     +    T    +      A    P  A+ IGPEGG+  
Sbjct: 142 MPDIH---FYRFFTDFFEEGLPTIPEKRTRFIAHPYGDSGAFVRSP-AAVAIGPEGGFID 197

Query: 203 EEKETLHSLPFVTPLSLGPRILRSD 227
            E ET     F TP SLG RIL ++
Sbjct: 198 RELETFIRAGF-TPFSLGERILTTE 221


>gi|324992255|gb|EGC24177.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK405]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQY 84
           D   ++  V+R+KEGD + L+F+         +    +S+    E    ++   Q  +  
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFDDSVKRLARVLDPSQQSLEILEELADNTELPVQVTIAS 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
            F   K ++L+++ QK  E+G  AI      ++      +      +++      AAEQ 
Sbjct: 80  GFP--KGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQS 137

Query: 139 DILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILI 194
               +P I       +FL    D +  IV  +E    G   +L + +  ++    +  + 
Sbjct: 138 KRNLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAATLVQAVRGLSKGDKLLFIF 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GPEGG   +E         V+   LGPRILR++TA + A+  V  + 
Sbjct: 198 GPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALTAVSVLL 243


>gi|289676398|ref|ZP_06497288.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae FF5]
          Length = 60

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ Q + GD+
Sbjct: 6   SLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVAQQLWGDF 60


>gi|116627096|ref|YP_819715.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           thermophilus LMD-9]
 gi|116100373|gb|ABJ65519.1| Uncharacterized protein conserved in bacteria [Streptococcus
           thermophilus LMD-9]
 gi|312277559|gb|ADQ62216.1| Ribosomal RNA small subunit methyltransferase E [Streptococcus
           thermophilus ND03]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 16/236 (6%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V+ P+ IK +     D   ++ +V+R+ E D ++L      + L+++      +   +E 
Sbjct: 10  VENPVIIKDK-----DTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVFEVIED 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMD 125
            + +      V       K ++L+ + QK  E+G  AI        V+    +      D
Sbjct: 65  LNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKLAKKED 124

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAI 184
           ++    + AAEQ     +P +         L    H  +I  A E       L  L   +
Sbjct: 125 KLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELATLAREL 184

Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           A + N   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ V
Sbjct: 185 AKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSSV 239


>gi|119953152|ref|YP_945361.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae
           91E135]
 gi|119861923|gb|AAX17691.1| hypothetical cytosolic protein [Borrelia turicatae 91E135]
          Length = 242

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)

Query: 29  YHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           YHYL  V R+K GD + +L  G++  +    S     I+         + +  +V    S
Sbjct: 24  YHYLVDVRRVKVGDTLNVLLGGREVRFAEISSIDNNLIKLSTLKVEMLKKRDFEVSIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY-TQNTHYNMDRVRTYTISAAEQCDIL 141
            +K  +LD  +++ VE+G+  I  V     + R    +  +   R       A +Q    
Sbjct: 84  SLKGRKLDLSLRQVVEIGVDHINIVNADNSVARIDMDDLEFKSTRFLKLINEALKQSGNT 143

Query: 142 TLPFI----------YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
            +P +          Y P+   ++     H   ++     CG +        I+    + 
Sbjct: 144 QVPSLNFYKNFFSISYSPSVNYYVA----HKEGVLLG---CGDD--------ISVFGKIG 188

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           ILIGPEG +   E +    L F   +     ILR+DTA V ++A
Sbjct: 189 ILIGPEGCFSKSEIDFFKKLNF-KFVRFNTPILRADTAVVYSLA 231


>gi|325473652|gb|EGC76841.1| hypothetical protein HMPREF9353_01943 [Treponema denticola F0402]
          Length = 257

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 20/229 (8%)

Query: 29  YHYLAHVLRMKEGD--NILLFNGKDGEW-LSKISYVGKSIRFKV---EYQSRSQTKQSDV 82
           Y+YL  V R+KEG   NI L   K     + KI+   K I  ++   E+   ++  +   
Sbjct: 22  YNYLVSVRRIKEGQVLNISLNGVKPASAEVFKINTEKKYIELRLLKEEFAFDAEPYKPRA 81

Query: 83  QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA---EQ 137
           + I     IK N +D  ++++ E G   I PV+  ++     N+++            +Q
Sbjct: 82  EIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSVIKKENINQTERRERIIREARQQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVA 191
              +    I P   L+  L +  ++  +     I+ +++  GS +  + L A   +  + 
Sbjct: 142 SGSVVNTKILPAQELKAALDSVLEYTAKRKTAFIMLSEKKTGSFSFFDCLSAETEV--IV 199

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + IG EGG  S+E E L    F   +     +LR++TAA+ ++A  Q I
Sbjct: 200 LAIGCEGGIGSKESEFLKEHKF-EEVHFNTNVLRAETAAIYSIAAAQVI 247


>gi|15594408|ref|NP_212196.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31]
 gi|3915343|sp|O51089|RSME1_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 1;
           AltName: Full=16S rRNA m3U1498 methyltransferase 1
 gi|2687948|gb|AAC66455.1| predicted coding region BB0062 [Borrelia burgdorferi B31]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENSLEKLHAIAHI 187
           I+ A Q  I  LP I        ++KN   + + +    F  +    +NS + L  I  I
Sbjct: 130 IAGAMQGKITYLPKIK-------IIKNLKESLKYIQQENFEIKILLEKNSEKNLIDIEQI 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            N  I++GPE G+  +EK+ +    F +P S+    LR++TA +AA
Sbjct: 183 NNAVIIVGPERGFTEKEKQLIAQYNF-SPYSISTNTLRTETATIAA 227


>gi|301165446|emb|CBW25017.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 105/237 (44%), Gaps = 28/237 (11%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++ R F++  L  + Q   SGD   +L  V+R+K+ + ILL NGK  +  ++ + +    
Sbjct: 5   YIDREFLENELGQEIQ--LSGDSARHLIKVIRIKKNETILLLNGKGQKCEARSTRID--- 59

Query: 66  RFKVEYQSRSQTKQSD---VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           R +++ +  S    SD   +       K +  + +++ + E+G+  I      Y+Q    
Sbjct: 60  RREIDLEILSINNISDDRKLSLFLGLPKKDAFESIVKMASEIGIKNIYLYRAEYSQQDIE 119

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNW-----DHNCQIVFADETCGSEN 176
             DR+     SA  Q +         P  + FL + N+     D++  + F+  +    +
Sbjct: 120 FTDRLLKLEESAIIQSN--------NPFRINFLKVDNFSDAFKDYSNVVHFSTFSSTDAD 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           SL+            ++IGPE G+  +E++ +     V+ + L   I+R+ TA   A
Sbjct: 172 SLK------FDSETLLVIGPEAGFSQDEEDQIKGFENVSTVKLDTYIMRAPTALAVA 222


>gi|57237164|ref|YP_178176.1| hypothetical protein CJE0152 [Campylobacter jejuni RM1221]
 gi|86149681|ref|ZP_01067911.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88597460|ref|ZP_01100695.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|148926325|ref|ZP_01810009.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157414473|ref|YP_001481729.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205356592|ref|ZP_03223355.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218561837|ref|YP_002343616.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|57165968|gb|AAW34747.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           RM1221]
 gi|85839949|gb|EAQ57208.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190521|gb|EAQ94495.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359543|emb|CAL34327.1| conserved hypothetical protein Cj0156c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145844717|gb|EDK21822.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157385437|gb|ABV51752.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345597|gb|EDZ32237.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284925449|gb|ADC27801.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|307747117|gb|ADN90387.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315057596|gb|ADT71925.1| Ribosomal RNA small subunit methyltransferase E [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315927805|gb|EFV07131.1| RNA methyltransferase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315930582|gb|EFV09615.1| RNA methyltransferase family protein [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931969|gb|EFV10922.1| RNA methyltransferase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 218

 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 31/216 (14%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQT-KQS 80
           G+ +++L  V R+KE   + L N +D       ++ ++    +++F      +SQ  KQS
Sbjct: 18  GENFNHLK-VRRVKENSELNLRNLQDNFLYNYTITNLTRNSCTLKF---LNKKSQNIKQS 73

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCD 139
           ++    + I    L+  +    E+G+  +  V T ++Q N   +++R     IS+ EQC 
Sbjct: 74  ELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCG 133

Query: 140 ILT-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPE 197
             T +  I   +T EF+ K + +   + F  E              +H     +  IGPE
Sbjct: 134 RNTKMDLIIHQSTQEFVQK-FPNAIMVDFQGEQQ------------SHFDEKELYFIGPE 180

Query: 198 GGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232
           GG++++E+     L F   +SL    IL+S TA +A
Sbjct: 181 GGFNNDER-----LLFNRKISLKSSNILKSQTAIIA 211


>gi|303284987|ref|XP_003061784.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457114|gb|EEH54414.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 184

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 15/171 (8%)

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-RVRTYTISAAEQCD 139
           +V      +K  R D++++K  E+G  ++ P +T  +  T    + R      +A++QC 
Sbjct: 3   EVAVACGGLKGGRADWLVEKLAELGAASLAPTLTARSAVTKRGREGRWVRVAAAASKQCL 62

Query: 140 ILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHA-------IAHIPNVA 191
                 +  P   + LL+   D    ++ A       ++L             A  P   
Sbjct: 63  RTHALVVESPCAFDALLRRVRDAPIALLAAAGAPPLRDALRDADVDDGDDGETASGPGRG 122

Query: 192 -----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                +++GPEG +  +E   L      TP+ LGP  LR +TAAVA MA V
Sbjct: 123 ATGGLLIVGPEGDFTEDELGALIDA-GATPVGLGPLRLRVETAAVALMACV 172


>gi|312140293|ref|YP_004007629.1| RNA methyltransferase [Rhodococcus equi 103S]
 gi|311889632|emb|CBH48949.1| putative RNA methyltransferase [Rhodococcus equi 103S]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 31/238 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83
           G +  + A V R+K G+ +LL +G+ G   + ++  GK  R  +E  +R   Q     V 
Sbjct: 22  GPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKD-RLDLEVTARLDQQPPTPQVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
            + +  K  R +  ++ + E G+  + P      + R+     H  + R R   I+AA+Q
Sbjct: 81  LVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHKGVTRWRNAAIAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAH---------- 186
                +P +           +  H  Q++           +   LH  A           
Sbjct: 141 ARRSFVPEVA----------DLHHTQQVLERVREVVGRGGVVAVLHESAKSPFASLPLRD 190

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P V +++GPEGG   +E   L        L LGP +LR+ TAA  A+  +  +   W
Sbjct: 191 APEVMLVVGPEGGLSDDEIAALTGAGATAVL-LGPTVLRTSTAAAVALGAIGVLTDRW 247


>gi|224533961|ref|ZP_03674546.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|224512964|gb|EEF83330.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           I+ A Q  I  LP I     L+  LK      Q  F  +    +NS + L  I  I N  
Sbjct: 130 IAGAMQGKITYLPKIKIIKNLKDSLKYIQ---QENFEIKILLEKNSEKNLIDIEQINNAV 186

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           I++GPE G+  +EK+ +    F +P S+    LR++TA +AA
Sbjct: 187 IIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA 227


>gi|164686290|ref|ZP_02210320.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM
           16795]
 gi|164601892|gb|EDQ95357.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM
           16795]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 20/225 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQ- 83
           G+   +++ VLR K G+ + + +  + E++ +I+ + K  +   +  + R   ++SD++ 
Sbjct: 22  GEDVKHISKVLRCKIGEKLEICDKDNSEYICEITDINKEQVDLDI-IEKREIKRESDLKV 80

Query: 84  --YIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAA 135
             Y   P K+ +++ ++QK  E+G+  I      R V+    +     ++R       AA
Sbjct: 81  KLYQGLP-KSTKMELILQKLTEVGVDEIILVSTKRSVVKVDDKKEGKKIERWERIMYEAA 139

Query: 136 EQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           +Q     +P +    + +  L   KN D N      + T   ++++E     A I ++ I
Sbjct: 140 KQSKRGKIPKLRGILSFKEALEDMKNNDMNICPYENERTVSIKSAIEG----ADINSIGI 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +GPEGG+  EE E +  +     +SLGPRILR++TA+V A ++V
Sbjct: 196 FVGPEGGFEEEEIENIQDINS-KVVSLGPRILRTETASVVASSIV 239


>gi|227833632|ref|YP_002835339.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184635|ref|ZP_06044056.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454648|gb|ACP33401.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           +  ++AA+Q     +P +  P T   L +       +V  +E   +E  L+ L  +    
Sbjct: 135 SAAVAAAKQSRRARVPAVRGPLTTRQLCQEISGARALVLHEE---AEVRLKDLTDLDAAE 191

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +L+GPEGG  +EE   L        + LGP +LR+ +A++ A+A +  +   W
Sbjct: 192 TIYLLVGPEGGIGAEELARLQDA-GAAAIKLGPEVLRTASASMVALASIGTLTARW 246


>gi|325677133|ref|ZP_08156802.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325552118|gb|EGD21811.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 31/238 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83
           G +  + A V R+K G+ +LL +G+ G   + ++  GK  R  +E  +R   Q     V 
Sbjct: 22  GPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKD-RLDLEVTARLDQQPPTPQVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
            + +  K  R +  ++ + E G+  + P      + R+     H  + R R   I+AA+Q
Sbjct: 81  LVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHKGVTRWRNAAIAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHAIAH---------- 186
                +P +           +  H  Q++           +   LH  A           
Sbjct: 141 ARRSFVPEVA----------DLHHTQQVLERVREVVGRGGVVAVLHESAKSPFASLPLRD 190

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P V +++GPEGG   +E   L        L LGP +LR+ TAA  A+  +  +   W
Sbjct: 191 APEVMLVVGPEGGLSDDEIAALTGAGATAVL-LGPTVLRTSTAAAVALGAIGVLTDRW 247


>gi|260891163|ref|ZP_05902426.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254]
 gi|260859190|gb|EEX73690.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254]
          Length = 90

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
           +I+FA E  G   SL ++       ++  +IGPEGG   EE + L +      +SLG RI
Sbjct: 14  KIIFAYENSGESKSLSEIIEKGD-KDILYIIGPEGGITQEEVDFLKNNK-AMEISLGKRI 71

Query: 224 LRSDTAAVAAMALV 237
           LR++TAA+    ++
Sbjct: 72  LRAETAAIVVCGII 85


>gi|325474581|gb|EGC77767.1| hypothetical protein HMPREF9353_00614 [Treponema denticola F0402]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 36/250 (14%)

Query: 27  DQYHYLAHVLRMKEGD--NILLFNGKDGEWL------SKISYV------GKSIRFKVEYQ 72
           ++Y ++  +L +KEGD     + NGK GE L       KI +        K+I  K   +
Sbjct: 41  ERYLHIKKILNLKEGDVFKAGIINGKIGEALISHLSEEKIVFSFCPNPPDKNIADKGADK 100

Query: 73  SRSQTKQSDVQYI---FSPIKTN-------RLDYMIQKSVEMGMGAIRPVITR-----YT 117
           ++ +    +V+ I     PIK         +L  +++ +  +G   I    T      Y 
Sbjct: 101 NKDRKDAYEVEKIPLPLPPIKIILGFPRPIQLRRILRDAASLGFAEIVLCGTELGERSYL 160

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLP-FIYPPTTLEFL--LKNWDHNCQIVFADETCGS 174
           ++   + + ++ Y +    Q     LP F +  +  E L  LK        +  D   G 
Sbjct: 161 KSNLSSPEEIKKYLLDGISQAGQTLLPAFSFCSSVKEALKDLKAASFKGSKMLLD--IGD 218

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             SL     I    +V I IG E G+   E+E   S  F++  S+G RILR++TA  +A+
Sbjct: 219 FPSLSTFRMIKG-ESVLIAIGSERGWTQNEREAFFSEGFIS-YSMGKRILRTETALTSAL 276

Query: 235 ALVQAICGDW 244
           +++ A  G W
Sbjct: 277 SVLLANNGFW 286


>gi|302336696|ref|YP_003801902.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM
           11293]
 gi|301633881|gb|ADK79308.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM
           11293]
          Length = 272

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 40/249 (16%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGE----WLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           ++ HYL  VLR+ +G    +F G+D       ++  S    ++  + E ++ ++  ++  
Sbjct: 24  ERAHYLLRVLRLSQG---AVFPGQDSRGKRYLITLESETPCTLSLRREEEASAREVEACF 80

Query: 83  QYI------FSPI-------KTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNM 124
           + +      F PI       K  ++D +I+++ E G   I PV+T     ++T       
Sbjct: 81  RELPEQGPDFPPIIFYQAILKGKKMDQVIRQATEAGADFIIPVLTDRSVPQFTPGEAEKK 140

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--------WDHNCQIVFADETCGSEN 176
            +     +  A Q    T   +  P +L+ ++++             ++ F +    + +
Sbjct: 141 QKRWEIIVREAIQQSGATGTTLLLPRSLKKVIEDPPMPRPQGGGREVKLFFHERPIANGS 200

Query: 177 SLEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               LH      I ++   +GPEGG+  +E E      F  PL     ILR++TAA+  +
Sbjct: 201 ----LHGYLSGEISSITAAVGPEGGFSPKESEMFLQAGFC-PLFFSGNILRAETAAIYGL 255

Query: 235 ALVQAICGD 243
           A ++A+  +
Sbjct: 256 AAIRALVAE 264


>gi|262283462|ref|ZP_06061228.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260953|gb|EEY79653.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 19/228 (8%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQY 84
           D   ++  V+R+KEGD + L+F+  DG  + +++ V    +  +E  +  +   +  VQ 
Sbjct: 20  DTAKHMFSVMRLKEGDQVTLVFD--DG--VKRLARVLDPNQQSLEILEELADNTELPVQV 75

Query: 85  IFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             +    K ++L+++ QK  E+G  AI      ++      +      +++      AAE
Sbjct: 76  TIASGFPKGDKLEFITQKVTELGACAIWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAE 135

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAI 192
           Q     +P +         L        I+ A E    E      +  L  +A    V  
Sbjct: 136 QSKRNLIPEVRLFDKKADFLAALAAFDCIIVAYEEAAKEGESAALVRALSGLAVGAKVLF 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + GPEGG   EE         V+   LGPRILR++TA + A+  V  +
Sbjct: 196 IFGPEGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242


>gi|86151272|ref|ZP_01069487.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153813|ref|ZP_01072016.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|121613031|ref|YP_999881.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167004847|ref|ZP_02270605.1| hypothetical protein Cjejjejuni_00900 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315123761|ref|YP_004065765.1| hypothetical protein ICDCCJ07001_153 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841619|gb|EAQ58866.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842774|gb|EAQ59986.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250118|gb|EAQ73076.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|315017483|gb|ADT65576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 31/216 (14%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQT-KQS 80
           G+ +++L  V R+KE   + L N +D       ++ ++    +++F      +SQ  KQS
Sbjct: 18  GENFNHLK-VRRVKENSELNLRNLQDNFLYNYTITNLTRNSCTLKF---LNKKSQNIKQS 73

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCD 139
           ++    + I    L+  +    E+G+  +  V T ++Q N   +++R     IS+ EQC 
Sbjct: 74  ELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCG 133

Query: 140 ILT-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPE 197
             T +  I   +T EF+ K + +   + F     G + S        H     +  IGPE
Sbjct: 134 RNTKMDLIIHQSTQEFIQK-FPNAIMVDFQ----GKQQS--------HFDEKELYFIGPE 180

Query: 198 GGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232
           GG++++E+     L F   +SL    IL+S TA +A
Sbjct: 181 GGFNNDER-----LLFNRKISLKSSNILKSQTAIIA 211


>gi|157413088|ref|YP_001483954.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387663|gb|ABV50368.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9215]
          Length = 257

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 25/231 (10%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80
           + ++ HYL  V+R+K G  I + NG+   W  K   V       I+ K  Y    Q K+ 
Sbjct: 25  TNEEAHYLNKVMRIKNGKEIFIANGEGSLW--KAIKVNNDCLEIIQLKKPYL--FQEKEI 80

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--VRTYTI--SAAE 136
            +  I   I  +  + +++   E+G+  I+P+ +    N + N  R  +R   I   A E
Sbjct: 81  YLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNAIIKEAVE 140

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI---- 192
           Q + L  P+I     +   LK+ D+   +  +      EN    L+         I    
Sbjct: 141 QSERLWKPYILNGMDIIEWLKSRDNQESVSIS---ITRENPRYYLNQWLREHQEFINKKG 197

Query: 193 -----LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                +IGPEGG+ S+E +  +     T + L   ILR+ TA++ A +++ 
Sbjct: 198 GIFWNVIGPEGGWSSKEIDFFNK-NNNTFVKLSETILRTSTASINASSILN 247


>gi|315604659|ref|ZP_07879722.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313671|gb|EFU61725.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 262

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 18/246 (7%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74
           L +  +    G +  + A V R+  G+ + + +G+       +    K ++   V    R
Sbjct: 18  LGVGERATLGGSEGRHAASVRRIGAGERVDIVDGRGLRLTCDVIGSDKDTLSLTVRESRR 77

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVR 128
                 +V  + +  K  R +  ++   E+G+  +      R ++            + +
Sbjct: 78  EDAPVPEVVLVQALAKGGRDEAAVEICTEIGVDRVIPWASQRAIVQWKGPKAEKGRAKWQ 137

Query: 129 TYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVF-----ADETCGSENSLEK 180
               +AA+Q     +P +        L   + +      + F     A E+ G+  +  +
Sbjct: 138 AVARAAAKQSRRAFVPPVEDAVDSARLSAWIASLTAEGGVAFVCHEEASESLGAALARIR 197

Query: 181 L-HAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           L  A   +P  +A+++GPEGG  +EE   L     +T + LG  +LRS TA   A+ L++
Sbjct: 198 LGSAAGSLPARIALVVGPEGGIGAEESAQLVGAGALT-VGLGAHVLRSSTAGAVALTLIR 256

Query: 239 AICGDW 244
           A  G +
Sbjct: 257 AAAGSY 262


>gi|42527383|ref|NP_972481.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC
           35405]
 gi|41817968|gb|AAS12392.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC
           35405]
          Length = 257

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 20/229 (8%)

Query: 29  YHYLAHVLRMKEGDNILL-FNGKD--GEWLSKISYVGKSIRFKV---EYQSRSQTKQSDV 82
           Y+YL  V R+KEG  + +  NG       + KI+   K I  ++   E+   ++  +   
Sbjct: 22  YNYLVSVRRIKEGQVLKISLNGVKPASAEVFKINTEKKYIELRLLKEEFAFDAEPYKPRA 81

Query: 83  QYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA---EQ 137
           + I     IK N +D  ++++ E G   I PV+  ++     N+++            +Q
Sbjct: 82  EIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSVVKKENINQTERRERIIREARQQ 141

Query: 138 CDILTLPFIYPPTTLEFLLKN-WDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVA 191
              +    I P   L+  L +  D+        I+ +++  GS +  + L A      + 
Sbjct: 142 SGSVVNTKILPAQELKAALDSVLDYTANRKTAFIMLSEKKVGSFSFFDCLSA--ETEAIV 199

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + IG EGG  S+E E L    F   +     +LR++TAA+ ++A  Q I
Sbjct: 200 LAIGCEGGIGSKEIEFLKEHKF-EEVHFNTNVLRAETAAIYSIAAAQVI 247


>gi|330841125|ref|XP_003292554.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum]
 gi|325077196|gb|EGC30925.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum]
          Length = 297

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 62/289 (21%)

Query: 7   LKRLFVD-FPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVG 62
           ++R F++ FP  +K +  + SG Q +++   LR+K G+ I LF  NGK+G  ++KI  + 
Sbjct: 2   VRRFFINEFPSFLKGSILQLSGQQNNHV-KTLRLKVGNTIELFDSNGKNG--VAKIIEIN 58

Query: 63  KS-IRFKVEYQSRSQTKQSDVQYI---FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
           K+    ++E      T   ++  I    S  K  R ++MI+K  E+G+  +  + T +++
Sbjct: 59  KNETILQLENLGIESTNSEEINKIDIATSLPKLARAEWMIEKLSEIGISNLILLETEFSK 118

Query: 119 N-------THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQ-- 164
           +       T+  +DR     I +++Q     +  I PP +L   LK+      + +C+  
Sbjct: 119 SSPQSSSITNNKLDRFERIVIESSKQSRNNQIMNIIPPVSLNQFLKDRFINQKEGDCKYS 178

Query: 165 -IVFADETCGSENSL-------------------------EKLHAIAHIP-NVAILIGPE 197
            +   D   G E  L                         +   AI   P ++ + IG E
Sbjct: 179 HVFIGDPYQGKELPLVLDDIKQEQQQLQQKQPQQPQQPQQQSNKAIIKKPKDILLFIGAE 238

Query: 198 GGYHSEEKETLHSLP--------FVTPLSLGPRILRSDTAAVAAMALVQ 238
           GG+   E   + S+         ++T   +G  ILR +TAA+ +  +V+
Sbjct: 239 GGFSDRELYNIQSVVSNRNDSQLYLT--KMGNNILRMETAAILSSGIVK 285


>gi|154173682|ref|YP_001407502.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter curvus
           525.92]
 gi|112803794|gb|EAU01138.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 217

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 23/204 (11%)

Query: 37  RMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           R K G+ + L N KDG ++L +I   G K  R ++ + S    +       ++ +    +
Sbjct: 28  RAKVGERVNLRNLKDGKDYLYEIEEFGRKDARLRLVFTSTLTVRDYKFSLAWAVVDPKTI 87

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA--AEQCDILTLPFIYPPTTL 152
           +  I    E+G+G +  V T+++Q  ++ +D  R   ISA   EQC   +L        L
Sbjct: 88  EKTIPFLNELGVGKLIFVYTKFSQ-ANFKIDVKRLEYISALSCEQCGRDSLMSFEIYKNL 146

Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212
           +  L  +     + F     G +N       +       + IGPEGG+  EE   ++S  
Sbjct: 147 DEFLAVYKDVALVNF-----GGKN-------LTEYKGELLFIGPEGGFALEETRKINS-- 192

Query: 213 FVTPLSLGPR-ILRSDTAAVAAMA 235
                SL    ILRS TAAV+  +
Sbjct: 193 ---SYSLDTNSILRSQTAAVSVAS 213


>gi|268678804|ref|YP_003303235.1| hypothetical protein Sdel_0162 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616835|gb|ACZ11200.1| protein of unknown function DUF558 [Sulfurospirillum deleyianum DSM
           6946]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 18/148 (12%)

Query: 97  MIQKSV----EMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
           MI+K++    E+G+  +  +   ++Q +H  + DR++   I++ +QC       +   ++
Sbjct: 88  MIEKTLPMLNELGVSKLSFIYAEFSQKSHKLDFDRMQRIVINSCQQCGRSRWMEMELFSS 147

Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
           L+  L+ +  +  + F+ ET      +            +ILIGPEGG+ SE++  + S 
Sbjct: 148 LQAYLEAYPTSTILDFSQETMKESAEIS-----------SILIGPEGGF-SEKERNMFSN 195

Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQA 239
             +  L+    ILRS+TA VA  + + A
Sbjct: 196 HTIVGLTCKT-ILRSETAVVAVASKILA 222


>gi|295838961|ref|ZP_06825894.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|197695517|gb|EDY42450.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 251

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEY-QSRSQTKQSDV 82
           G +  +   V R++ G+ ++L +G  G W   +  +  GK  R  VE  + R +   S  
Sbjct: 25  GPEGRHAVSVKRLRPGEELVLSDGA-GRWAPCVVTAAEGKD-RLSVEVGELREEPVPSPR 82

Query: 83  QYIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAA 135
             +   + K +R +  ++   E G+ A+ P      +T++  +    ++ + R     A 
Sbjct: 83  LVVVQALPKGDRGELAVETMTETGVDAVVPWQAERCVTQWRGERGAKSLAKWRATAREAG 142

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           +Q      P +    + +            V   E  G+ ++      +    ++ +++G
Sbjct: 143 KQSRRPRFPEVAEAVSTKEAAALLSRAALAVVLHEDAGTASTPLATLPLPPSGDIVLVVG 202

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           PEGG    E  T  +        LGP +LR+ TA  AA+AL+    G W
Sbjct: 203 PEGGVAPAEL-TAFTAAGAHVCRLGPSVLRTSTAGTAAVALLSGRTGRW 250


>gi|149195029|ref|ZP_01872121.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2]
 gi|149134742|gb|EDM23226.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 39/227 (17%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
            Q + +G+ + YL  V R+K+ + + + N KD      I Y  K +    E   +S T Q
Sbjct: 11  NQIEITGESHKYLFKVRRIKKDELVKIRNLKDD-----ILYTYKIL----EINKKSSTLQ 61

Query: 80  SDVQYIFSPIKTNRLDYM---------IQKSV----EMGMGAIRPVITRYTQ-NTHYNMD 125
             +   FSP K     ++         I+K +    E+G+  I      Y+Q N   N++
Sbjct: 62  L-INKEFSPNKPKEFLHLAWCIIEPKNIEKVLPSLNEIGVSKISFTYCDYSQKNFKLNLN 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++   I++++QC    +  I    + +   + + +   + F     G E    K +   
Sbjct: 121 RLQKILINSSQQCGRSNIIEIEIINSSKEFFEKYQNFTALDFN----GKEIECNKKYT-- 174

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                 ILIGPEGG+  EE++      F   + L   IL+S+TAA A
Sbjct: 175 ----NPILIGPEGGFSEEERKK-----FTEIIKLKSFILKSETAACA 212


>gi|256375381|ref|YP_003099041.1| hypothetical protein Amir_1243 [Actinosynnema mirum DSM 43827]
 gi|255919684|gb|ACU35195.1| protein of unknown function DUF558 [Actinosynnema mirum DSM 43827]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 18/230 (7%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           G +  + A V R++ G+ ++L +G   +   +I+   K S+R +V  +         V  
Sbjct: 21  GPEGRHAATVRRLRAGEELVLSDGSGDQVRCEITEALKDSLRLRVVERWTVPEPGVRVVL 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH--YNMDRVRTYTISAAEQ 137
           + + +K  R +  ++ + E G+ A+ P      + ++         + R R     AA+Q
Sbjct: 81  VQALVKGERGELAVELATEAGVDAVLPWKAARCVAKWEDGPRGAKALGRWRATAREAAKQ 140

Query: 138 CDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILI 194
                +P +  P TT +           +V        E++   + ++A  P+  V +++
Sbjct: 141 ARRARVPEVGEPVTTKQLAALASRAAAVLVL------HESAEVGIGSVALPPSGEVLLVV 194

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG   +E   L        + LGP +LR+ TA   A+  +  +   W
Sbjct: 195 GPEGGIAEQELSALVEA-GAHVVRLGPSVLRASTAGAVALGALGVLTDRW 243


>gi|329116137|ref|ZP_08244854.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD
           2020]
 gi|326906542|gb|EGE53456.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD
           2020]
          Length = 247

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+ +GD ++L      ++L+K+   G + + ++  Q   +  +  VQ   
Sbjct: 20  DTIKHMFQVMRLGDGDQVVLVFDDGIKYLAKV-VDGAAYQLEI-VQDLGENLELPVQVTI 77

Query: 87  SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
           +    K ++LD++ QK  E+G  A+        V+    +      +++    + AAEQ 
Sbjct: 78  ASGFPKGDKLDFITQKVTELGAEALWAYPADWSVVKWDGKKLAKKEEKLAKIALGAAEQS 137

Query: 139 DILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHI-PNVAILI 194
               +P I       +F+ +  + +  ++  +E+   G +++L +  A       V  + 
Sbjct: 138 KRNKVPEIKLFEKKADFIGQLAEFDKILIAYEESAKEGEKSALARALATCQTGQKVLFIF 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG   +E E          + LGPRI+R++TA + A++ V
Sbjct: 198 GPEGGISPKEIEIFEEAGGFK-IGLGPRIMRTETAPLYALSAV 239


>gi|125717118|ref|YP_001034251.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus sanguinis
           SK36]
 gi|125497035|gb|ABN43701.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++  V+R+K GD ++L      + L+++    +     VE  + +      V    
Sbjct: 20  DTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSLEIVEELADNTELLVQVTIAS 79

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
              K ++L+++ QK+ E+G  A+      ++      +      +++      AAEQ   
Sbjct: 80  GFPKGDKLEFITQKATELGACALWGFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQSRR 139

Query: 141 LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETC--GSENSL-EKLHAIAHIPNVAILIGP 196
             +P I       +FL    D +  IV  +E    G   +L + +  ++    +  + GP
Sbjct: 140 NLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAATLVQAVRGLSKGDKLLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           EGG   EE         V+   LGPRILR++TA + A+  V  +
Sbjct: 200 EGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242


>gi|290991223|ref|XP_002678235.1| predicted protein [Naegleria gruberi]
 gi|284091846|gb|EFC45491.1| predicted protein [Naegleria gruberi]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 104 MGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQC-DILTLPFIYPPTTLEFLLKNW 159
           MG+  I P++T   Q+  Y     DR+    ISA EQ      +P I  P +++   K  
Sbjct: 54  MGVNKIIPIMTEKKQHAEYFENKKDRLEKIMISAVEQSKQFYGMPEIASPLSIQDYCKQM 113

Query: 160 DH--NCQIVFADETCGSE------NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
               N + VF D   G +      N +E+     +  N+ +L+GPE     +E+  L  L
Sbjct: 114 KEQLNERRVFLD-VDGEKPWLSLLNEIEENKQKMNKMNINLLVGPERDLFDQERAQLAEL 172

Query: 212 PFVTPLSLGPRIL-RSDTAAVAAMALVQAI 240
            F + LSL  +I+ RS+ A   ++  + ++
Sbjct: 173 GFES-LSLARKIVYRSEVALSVSLGSITSV 201


>gi|298346299|ref|YP_003718986.1| hypothetical protein HMPREF0573_11173 [Mobiluncus curtisii ATCC
           43063]
 gi|304389936|ref|ZP_07371893.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236360|gb|ADI67492.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC
           43063]
 gi|304326829|gb|EFL94070.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++A+++GPEGG  + E  T  +     P  LGP +LR  +A  AA+A++Q+  G W
Sbjct: 238 DIAVIVGPEGGITAPEL-TAFTAAGARPALLGPTVLRCSSAGPAALAVIQSQLGSW 292


>gi|251796224|ref|YP_003010955.1| hypothetical protein Pjdr2_2213 [Paenibacillus sp. JDR-2]
 gi|247543850|gb|ACT00869.1| protein of unknown function DUF558 [Paenibacillus sp. JDR-2]
          Length = 258

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 20/226 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQY 84
           D +H +  V+RMK  +  +  +G     L+ +     S  +   VE           V  
Sbjct: 22  DAFHAV-RVMRMKPEEKFIASDGISRVVLASVREAASSEVVADIVEELPMDSESSWSVTI 80

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQC 138
             S  K ++++ +IQK  E+G  A  P     +I +Y  +     ++R       AAEQ 
Sbjct: 81  AQSLPKGDKMELVIQKGTEIGAYAFAPFQSERMIVQYDGKKEAKRLERWSKIAKEAAEQS 140

Query: 139 DILTLPFIYPPTT---LEFLLKNWDHN--CQIVFADETCGS--ENSLEKLHAIAHI---P 188
               +P I P  +   L+ ++  +D    C     D   G+   +++       H+   P
Sbjct: 141 HRCRVPAIEPVRSWRELKEVIPTFDLALFCYEREGDAAAGTGIRDAVLNWKQAGHMAAEP 200

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            V +++GPEGG+   E +   +   V  + LG RILR++TA +  +
Sbjct: 201 KVLLIVGPEGGFTEREADEAEAAGAVI-VGLGRRILRTETAGIVGL 245


>gi|315657188|ref|ZP_07910072.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492291|gb|EFU81898.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++A+++GPEGG  + E  T  +     P  LGP +LR  +A  AA+A++Q+  G W
Sbjct: 238 DIAVIVGPEGGITAPEL-TAFTAAGARPALLGPTVLRCSSAGPAALAVIQSQLGSW 292


>gi|116333373|ref|YP_794900.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367]
 gi|116098720|gb|ABJ63869.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 90  KTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K  + +++ QK+ E+G+      GA   V           + R+      AAEQ   L  
Sbjct: 86  KQEKAEWITQKATELGVTHIIFFGAEWSVAKWSANKVPKKLARLTKIAHGAAEQAHRLRR 145

Query: 144 PFI-YPPTTLEFLLKNWDHNC----QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           P + Y P     L  + D       +     E       L++LH   H+  V    GPEG
Sbjct: 146 PTVSYAPNLAAVLATSADVTILAYEESAKQGEQAALNQQLQRLHPQQHLMAV---FGPEG 202

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           G    E     +   +    LGPRILR++TA +  ++ V  +C
Sbjct: 203 GISPAEVTRAQAAGAIL-AGLGPRILRTETAPLYLLSAVSVVC 244


>gi|148984210|ref|ZP_01817505.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147923499|gb|EDK74612.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800568|emb|CBW33208.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
          Length = 247

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNIV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I         L   D    I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAALLQAVTGLETGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E+  +   V    LG RILR++TA + A++ +  + 
Sbjct: 203 LSPAEIESFEAKGAVLA-GLGSRILRAETAPLYALSALSVLV 243


>gi|82622375|gb|ABB86775.1| unknown [Theileria lestoquardi]
          Length = 201

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 19/166 (11%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE----QCDILTLPF 145
           +   LD ++Q S  +G+G I  + +   + +++   ++   +I+ +     Q  + TL  
Sbjct: 31  RPKSLDKLLQYSASIGVGNIDLICSSKVEKSYWASHKLSKESINKSLILGLQQGVCTL-- 88

Query: 146 IYPPTTL-------EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPE 197
             P  TL       E   K  D+  +++   +   SE +L  L+   H+   + + IGPE
Sbjct: 89  -MPEVTLFISLGDYERAFKQKDYAMKLIAHPD---SEQTLGSLNLNTHVKGPILVAIGPE 144

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GG+   E      L FV    L  RILR++ AAVA ++ +  +  D
Sbjct: 145 GGWLDHELAYYKKLGFVQ-FKLTDRILRTEVAAVAILSQMSLLLND 189


>gi|88808873|ref|ZP_01124382.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805]
 gi|88786815|gb|EAR17973.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 19/212 (8%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           +  YL  VLR++ G  + + +G    + ++++  G  +    E  +   T  +    +  
Sbjct: 29  EARYLKRVLRLRPGAEVHVVSGCGQLFSTRLTTEG-DLALDSELGALPYTVAAPHPPLGL 87

Query: 88  PIKTNR--LDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +   R  +D +++ + E+G+  ++P+   R      Y  DR       A EQC+ L  P
Sbjct: 88  AVSLMRRGMDEVMRMACELGVDRLQPLQAQRCVPQAEYRPDRWGVILREAVEQCERLWAP 147

Query: 145 FIYPPTTLEFLLKNWDHNCQI-------VFADETCGSENSLEKLHAIAHIPN-VAILIGP 196
            + P  + +    +W  N          V  D+ C   ++L  L     +P+   I IGP
Sbjct: 148 ELLPVLSTD----DWWGNPSAEHLRLIAVTRDQACSDLSTL--LAVTKSLPDGCWITIGP 201

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           EGG+ S E  +     +   + LG  ILRS T
Sbjct: 202 EGGWTSAELRSAAEAGWCG-VGLGDTILRSST 232


>gi|88855039|ref|ZP_01129704.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1]
 gi|88815567|gb|EAR25424.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1]
          Length = 243

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 15/225 (6%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           +  +   V R+K G+ + + NG  G  +S      +     +E  +  +T +S      +
Sbjct: 25  EARHAVTVSRLKVGETVAIGNGA-GLVVSGPITTAEHTELTIEVANAERTARSTPAVFLA 83

Query: 88  PI--KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQ-NTHYNMDRVRTYTISAAEQCD 139
               K +R +  +Q + E+G+  + P      I+R+         DR       A++Q  
Sbjct: 84  QALAKADRDELAVQVATELGIDGVIPWSAARSISRWQGPKVAKGRDRWAAIVREASKQSL 143

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP +    T + L         +V   E   +E +L +L       ++ +++GPEGG
Sbjct: 144 RTWLPDVLDLVTTKQLAAFAATTRMLVL--EPTATE-TLSELEVDGR--DIVLVVGPEGG 198

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               E E L +    T + LG  +LR+ TA  AA+A++    G W
Sbjct: 199 VADHELELLTAAGAST-VRLGNEVLRTSTAGPAALAVLNVKLGRW 242


>gi|270263053|ref|ZP_06191323.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13]
 gi|270042741|gb|EFA15835.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13]
          Length = 90

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 182 HAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           H+I  +P    +V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 24  HSINTLPLPVDHVRLLIGPEGGLSADEIAMTTGYGF-TDILLGPRVLRTETTALTAITAL 82

Query: 238 QAICGD 243
           Q   GD
Sbjct: 83  QVRFGD 88


>gi|312879754|ref|ZP_07739554.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM
           12260]
 gi|310783045|gb|EFQ23443.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM
           12260]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 33/214 (15%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQYI 85
           Q H+L  VLR  EG    L  G  GE    +     + R + E   R         V  +
Sbjct: 25  QAHHLTRVLRRYEGA---LLEGLSGEGRVLLRLRLGAGRVEAEEVERVPESPDLLRVVLV 81

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            + +K ++ + +++ + E G+  IR       V    +      + R R     +  Q  
Sbjct: 82  VALLKADQFEPLLRMAAEFGVAEIRLLACERSVPRLESCREEGKLSRWRRILDESTRQSG 141

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--------NVA 191
            L  P ++PP  +  L             +E     +      A   +P          A
Sbjct: 142 SLRPPTLHPPVLVREL-------------EEATLPPSRFGAFLAPGTVPLGRCLPVEAAA 188

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           + +GPEG +  +E ETL +  FV P+ LGPRILR
Sbjct: 189 VAVGPEGDWSDQEVETLRAKGFV-PVGLGPRILR 221


>gi|317014464|gb|ADU81900.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Gambia94/24]
          Length = 226

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 25/238 (10%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLELRNLKDGFLYTYEHAEIAKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQVLEVIPSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            ++R +   I + EQC    L  +   P+T E +L  + +   + F  ET  +  + EK 
Sbjct: 122 KLERFQKILIHSCEQCGRSVLMELEAFPSTKE-VLNAYPNASVLDFNGETLPTSANFEK- 179

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                     I+IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 ---------GIIIGPEGGFSEQEREYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225


>gi|55820236|ref|YP_138678.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           thermophilus LMG 18311]
 gi|55822127|ref|YP_140568.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           thermophilus CNRZ1066]
 gi|55736221|gb|AAV59863.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55738112|gb|AAV61753.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 247

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 16/236 (6%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V+ P+ IK +     +   ++ +V+R+ E D ++L      + L+++      +   +E 
Sbjct: 10  VENPVIIKDK-----NTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVFEVIED 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMD 125
            + +      V       K ++L+ + QK  E+G  AI        V+    +      D
Sbjct: 65  LNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKLAKKED 124

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAI 184
           ++    + AAEQ     +P +         L    H  +I  A E       L  L   +
Sbjct: 125 KLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELATLAREL 184

Query: 185 AHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           A + N   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ V
Sbjct: 185 AKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSSV 239


>gi|262203051|ref|YP_003274259.1| hypothetical protein Gbro_3161 [Gordonia bronchialis DSM 43247]
 gi|262086398|gb|ACY22366.1| protein of unknown function DUF558 [Gordonia bronchialis DSM 43247]
          Length = 249

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 17/232 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82
           SG +  +   V R+  G+ I++ +G     + ++  V          +  +     D  V
Sbjct: 21  SGPEGRHAVTVTRVAVGERIVIGDGAGSTAVCEVQAVESKDTLIARVREFAYVAPPDPQV 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQ 137
             + +  K+ R +  +  + E G   I P      + R+       + + R    SAA+Q
Sbjct: 81  TVVQALPKSERSELAVDLATEAGADVIVPWQAARCVARWAGKADKGVAKWRAAASSAAKQ 140

Query: 138 CDILTLPFI---YPPTTLEFLLKNWDHNCQIV--FADETCGSENSLEKLHAIAHIPNVAI 192
                +P I      T +  L  +      +V    +E  G    L     +A    + +
Sbjct: 141 SRRAWIPEITDLATTTDVRALCADTIATGGLVAILHEEATGGLRELP----LAQANRIVL 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +IGPEGG    E + L +L    P+ LGP ILR+ TAA  A+  +  +   W
Sbjct: 197 VIGPEGGLDDGEVDDLTAL-GAEPVLLGPEILRTSTAAAVALGAIGVLTERW 247


>gi|195952461|ref|YP_002120751.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932073|gb|ACG56773.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%)

Query: 75  SQTKQSDVQY---IFSPIKTNRLDYMIQKSVEMGMGAIRPVI-TRYTQNTHYNMD---RV 127
            +TK  DV+    +  PIK   L+ +I  +V+ G+  I PV   R  Q++   ++   R+
Sbjct: 57  EKTKPPDVKIYANVCIPIKLQTLETIIDYAVQGGVFEITPVFCKRSFQDSSKLLEKYQRL 116

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +     A +Q     LP +  P +L+   L+ +     IVF D     +N L K +    
Sbjct: 117 QKILKEAIKQSRPSFLPKLNHPISLQDITLQGYG----IVF-DSFEKPKNDLLKDN---- 167

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                ++ GPEGG   EE E L +L F T  SLG  ILR + A  A + +++
Sbjct: 168 --KYTLVFGPEGGLSKEEVEFLKALGFNTH-SLGDNILREELAVFAGIFMIR 216


>gi|291515586|emb|CBK64796.1| RNA methyltransferase, RsmE family [Alistipes shahii WAL 8301]
          Length = 237

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           ++  +   VLR++ G  I + +G+   +  +I+      R  V   S ++T    + Y  
Sbjct: 19  EESKHCIRVLRLQCGGRIHITDGRGNLFCCEITD-DNPRRCTVRVVS-AETGFEKLPYAL 76

Query: 87  ----SPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K + R ++ ++K+ E+G+ A+ P+ T +++   +  +R      +A +Q    
Sbjct: 77  TMAVAPTKNSERFEWFLEKATEVGVTAVVPLETEHSERRVFKPERGEKVVTAALKQSLKA 136

Query: 142 TLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             P ++P T   E +L   +    I                 A+       + IGPEG +
Sbjct: 137 YRPVLHPLTPFREAVLSAPEGRKFIAHCAPAQSPAGKAYLARALRPGETATVFIGPEGDF 196

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
              E     +  F   ++LG + LR++TAA+AA+ +   + G
Sbjct: 197 SPGEIAFALANGF-EEITLGRQRLRTETAALAAVVMASVVNG 237


>gi|41408259|ref|NP_961095.1| hypothetical protein MAP2161c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396614|gb|AAS04478.1| hypothetical protein MAP_2161c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 253

 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 17/216 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
            GD+  + A V R++ G+ ++L +   G    ++ + G+  +R +V  +         V 
Sbjct: 21  GGDEGFHAATVRRIRPGERLVLGDRAGGLARCEVEHAGRDGLRARVLERWTVAPPNPPVT 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
            + +  K+ R +  ++ + E G        A R V   +       + R R    +AA Q
Sbjct: 81  VVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDKGLRRWRAVAKAAARQ 140

Query: 138 CD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH--AIAHIPNVAI 192
                I T+  +    +L   +++      +V A      E++ ++L    +A   ++ +
Sbjct: 141 SRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALH----ESATDRLTDVPVAQAKSLFL 196

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +IGPEGG   +E   L     ++ + LGP++LR+ T
Sbjct: 197 VIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231


>gi|237753184|ref|ZP_04583664.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375451|gb|EEO25542.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 21/217 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           G+ Y++L    R ++ D+I L N  D   ++  I+ +GK S   +++     ++K     
Sbjct: 18  GEIYNHLFRSRRTRKLDSITLCNLSDTNVYIYTIAEIGKKSATLQLKTTQNMESKTPKGH 77

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTI--SAAEQCDIL 141
            I++ I    ++  +    E+ +  I      ++Q  H+ +D +R   I  ++ EQC  L
Sbjct: 78  LIWAMIDPKNIEKTLPFLNELNLAHITFFYADFSQK-HFKLDNLRLDRILENSCEQCGRL 136

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
           T   +     L  +L+ +     + F  +    E+SLE          +  LIG EGG+ 
Sbjct: 137 TRLKLELLNNLTEVLQKYPKIAVMDFNAKPL--ESSLE----------IPFLIGTEGGFS 184

Query: 202 SEEKETLHS-LPFVTPLSLGPRILRSDTAAVAAMALV 237
             E++ L +   F  P      ILRS+TAAV A + +
Sbjct: 185 PNERKLLSTQTTFSAP---NCNILRSETAAVYATSKI 218


>gi|167837895|ref|ZP_02464778.1| hypothetical protein Bpse38_15507 [Burkholderia thailandensis
           MSMB43]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 35/163 (21%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ ++I      
Sbjct: 8   AAVPRFFVDAALQADATLPLPVDVARH-AQVLRLQPGDLLALFDGTGGQYRARI------ 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT---------------NRLDYMIQKSVEMGMGAI 109
               VE   R    + D    F P++                +++D++I+K+VE+G+ A+
Sbjct: 61  ----VEIDRRGALARIDA---FEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAV 113

Query: 110 RP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            P      V+    +     +   R    ++ EQC    +P +
Sbjct: 114 APLSTARGVVKLSGERADKRVSHWRGVVRASCEQCGRNRVPDV 156


>gi|134098067|ref|YP_001103728.1| protein involving differentiation [Saccharopolyspora erythraea NRRL
           2338]
 gi|291007474|ref|ZP_06565447.1| protein involving differentiation [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910690|emb|CAM00803.1| protein involving differentiation [Saccharopolyspora erythraea NRRL
           2338]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 12/212 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           SG +  + A V R+  G+ +LL +G+ G     ++   + S+   VE           V+
Sbjct: 20  SGPEGRHAATVRRIGVGEQLLLSDGRGGMARCSVTSTARDSLELDVEESWLVPRPALRVR 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH--YNMDRVRTYTISAAE 136
              + +K +R +  ++ + E G+  + P      + R+         + R R+    AA+
Sbjct: 80  LAQALVKGDRGELAVELATEAGVDGVLPWKAARCVARWDDGPRGAKALGRWRSTVAQAAK 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q      P +  P T   L +        V   E+  +  +   L A   +    +++GP
Sbjct: 140 QARRPWTPEVGEPVTTRQLSRVVAEADAAVVLHESASTPLASVDLPAEGEL---VLVVGP 196

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           EGG   +E   L        + LGP +LR+ T
Sbjct: 197 EGGVGEDELAVLTEA-GAQAVRLGPSVLRAST 227


>gi|227548789|ref|ZP_03978838.1| protein of hypothetical function (DUF558) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079119|gb|EEI17082.1| protein of hypothetical function (DUF558) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 18/233 (7%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
            +G+  G +  +   V R+  G+ I+L +G        ++ +      + E  + +Q  Q
Sbjct: 12  ARGELDGAEGRHAVTVKRIGVGERIMLVDGAGTAAEIAVAEIRGKDYLRGEVLALTQVPQ 71

Query: 80  SD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTH-YNMDRVRTYT 131
               +  + +  K  R +  +  +V+ G  AI P      I R+  +     + + +   
Sbjct: 72  PTPRITVVQAIPKAERAELAVDLAVQGGADAIVPWLSNRTIARWPADKQGKQVAKWQAVA 131

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
             AA+Q     +P +  P T   L +       +V        E+++  +  +     V 
Sbjct: 132 REAAKQSRRAWVPQVAEPVTTNQLRELVVGKQALVL------HEDAVAPISGVEFADEVF 185

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG   EE E L +      + LGP +LR+ +AA AA+  + A+   W
Sbjct: 186 LIVGPEGGIGPEELEALGA----DAVKLGPEVLRTASAAFAALCAIGAVTERW 234


>gi|32398792|emb|CAD98502.1| conserved hypothetical protein [Cryptosporidium parvum]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS-----AAEQCDILTLPFIYP 148
            + ++Q +V +G+G I  V T  ++ ++ N  +++  +I        EQ      P +Y 
Sbjct: 184 FEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASKTLCPDVYV 243

Query: 149 PTTLEFLLKNWDH-----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
             +  F L++  +        I    +  G+ + + ++   +H   + + IGPEGG+  E
Sbjct: 244 YASWTFFLQHLRNYFFCKESMIGIVADVLGN-SKITEIGLQSHTGPIILAIGPEGGWTKE 302

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E   L ++ F   +++G RIL+ +TA ++
Sbjct: 303 ELTDLITMGF-KVVNMGDRILKVETALIS 330


>gi|311895971|dbj|BAJ28379.1| putative ribosomal RNA small subunit methyltransferase E
           [Kitasatospora setae KM-6054]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 22/232 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK-SIRFKVEYQSRSQTKQSDVQ 83
           G +  + A V R++ G+ + L +G+       +S + GK ++   V            + 
Sbjct: 24  GAEGRHAAAVKRLQPGEALTLADGRGRGADGTVSALHGKDALDVLVAAVREEPAPAPRIT 83

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
            + +  K +R +  ++   E G+ AI P      IT++  +     + + R     A +Q
Sbjct: 84  VVQALPKGDRGELAVETMTEAGVDAIVPWAASRCITQWKGERGAKALAKWRATAREAGKQ 143

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIP---NVAI 192
              L  P +    T   LL        +  AD       E +L    A A +P    + +
Sbjct: 144 ARRLRFPEVGDALTTRQLLP------LLAAADFAAVLHEEGALP--LAGADLPAAGEIVL 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG   +E           P  LGP +LR+ TA VAA AL+    G W
Sbjct: 196 VVGPEGGVSPDEIAAFAEA-GAAPYRLGPSVLRTSTAGVAAGALLLGRTGRW 246


>gi|66475514|ref|XP_627573.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|46229333|gb|EAK90182.1| hypothetical protein with a C-terminus transmembrane domain
           [Cryptosporidium parvum Iowa II]
          Length = 336

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS-----AAEQCDILTLPFIYP 148
            + ++Q +V +G+G I  V T  ++ ++ N  +++  +I        EQ      P +Y 
Sbjct: 184 FEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASKTLCPDVYV 243

Query: 149 PTTLEFLLKNWDH-----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
             +  F L++  +        I    +  G+ + + ++   +H   + + IGPEGG+  E
Sbjct: 244 YASWTFFLQHLRNYFFCKESMIGIVADVLGN-SKITEIGLQSHTGPIILAIGPEGGWTKE 302

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E   L ++ F   +++G RIL+ +TA ++
Sbjct: 303 ELTDLITMGF-KVVNMGDRILKVETALIS 330


>gi|294790827|ref|ZP_06755985.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304]
 gi|294458724|gb|EFG27077.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304]
          Length = 250

 Score = 43.5 bits (101), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYN 123
           +Y+ +   K   VQ +    K++R +  I+ + E+G+  I P      ++          
Sbjct: 72  QYEPQPSIKLGLVQAL---AKSDRDEQAIEMATEIGVDFILPWQADRSIVQWKGPKAARG 128

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLE 179
           + + +   I A EQ     +P + P        E++ K  D   Q++   +    + S  
Sbjct: 129 LRKWQDQLIMATEQSRRSRIPRLNPLVASSGLEEWIRKEVDAGSQVLLLHQDA--DLSWS 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           ++      P +++++GPEGG   +E E   +     P+ LG  ILR+ +A   A+AL+  
Sbjct: 187 QVSLPETSPMISVIVGPEGGISDKEVEAFAAA-GAKPVLLGHTILRASSAGPVALALLSG 245

Query: 240 ICG 242
             G
Sbjct: 246 ALG 248


>gi|332364548|gb|EGJ42319.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK355]
          Length = 250

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 15/226 (6%)

Query: 27  DQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK-QSDVQY 84
           D   ++  V+R+K GD + L+F+      +  +    +S+    E    ++   Q  +  
Sbjct: 20  DTAKHMFSVMRLKAGDQVTLVFDDGVKRLVQVLDPSQQSLEILEELADNTELPVQVTIAS 79

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138
            F   K ++L+++ QK  E+G  A+      ++      +      +++      AAEQ 
Sbjct: 80  GFP--KGDKLEFITQKVTELGACALWAFPADWSVAKWDGKKLAKKSEKLEKIAQGAAEQS 137

Query: 139 DILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAILI 194
               +P +       +FL    D +  IV  +E+     +   + A++ + +   V  + 
Sbjct: 138 KRNLIPEVRLFDKKADFLAALADFDRIIVAYEESAKEGETAALVRALSGLESGAKVLFIF 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEGG   +E         V+   LGPRILR++TA + A+  V  +
Sbjct: 198 GPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLYALTAVSVL 242


>gi|312601158|gb|ADQ90413.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           hyopneumoniae 168]
          Length = 93

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 177 SLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           S E+     +IP    N  I+IGPEGG+   E +    L F + ++LG RILRS+TAA+
Sbjct: 27  SFERAKNNINIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGFQS-ITLGKRILRSETAAI 84


>gi|283458058|ref|YP_003362669.1| hypothetical protein RMDY18_10170 [Rothia mucilaginosa DY-18]
 gi|283134084|dbj|BAI64849.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa
           DY-18]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 40/239 (16%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYV---GKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           A V R++ G+ I L +G     L  ++ +   G S++ +   + RS      VQ +    
Sbjct: 79  ALVKRLELGERIDLGDGTGRRALGTVASINVDGVSVQVQELREERSVPSIYLVQAL---A 135

Query: 90  KTNRLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K  R    I+ + E+G+       A R ++    +       + +    +AA+Q     +
Sbjct: 136 KDGRDLLAIETATELGVYGVLPWSADRSIVRWKGERASKAHTKWQNTVTAAAKQSRRALI 195

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----------LEKLHAIA-------H 186
           P +Y        L N     +++  +E  GSE S           E+L A+A       +
Sbjct: 196 PEVYD-------LYNTADLVELI--EEVAGSEQSAAVFILHEQATERLSALARTLVEAEN 246

Query: 187 IPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +P  + +L+GPEGG    E +          L LG  +LRS TA  AAM  +  + G W
Sbjct: 247 LPEEIYLLVGPEGGISDREVQLFTDAGAQLAL-LGDEVLRSSTAGSAAMCTLNVVLGRW 304


>gi|317178616|dbj|BAJ56404.1| hypothetical protein HPF30_0307 [Helicobacter pylori F30]
          Length = 226

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 29/240 (12%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPILKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMASKKTHLILSVIEIKNVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKI 121

Query: 123 NMDRVRTYTISAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            ++R +   I + EQC    ++ L     P T E  LK +     + F  ET  +    E
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVF--PNTKE-ALKAYPKASVLDFKGETLPASVDFE 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
           K           ++IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 179 K----------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|227495124|ref|ZP_03925440.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM
           15436]
 gi|226831576|gb|EEH63959.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM
           15436]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 21/230 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+ A V+R+  G+ I L    DG  L  IS V  +    V  + R    ++ ++ 
Sbjct: 23  TGSEAHH-ACVMRVAPGEEIHLV---DGHGLRVISEVISAADKSVTVRPREIKNETSIRP 78

Query: 85  IFSPI----KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISA 134
           + + +    K  R +  ++ + E+G+  +      R ++    +    N+++      +A
Sbjct: 79  VTTLVQALAKGGRDEQAVEMATEVGIDKVIAWQSQRTIVKWEGKKQGKNLEKWSNLLKAA 138

Query: 135 AEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAI 192
            +Q     +P + Y  +T   L K  D    ++        E++LE++         +A+
Sbjct: 139 TKQSRRSRIPTVDYAESTKSLLNKLTDAKLLVLHES----GEHTLEQIPTEWFDTTEIAL 194

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           ++GPEGG  +E +    +      + +G  ++RS TA   A+ALV  + G
Sbjct: 195 IVGPEGGI-TEAELAAFTAQGAQIVRIGNTVMRSSTAGTVALALVNYLSG 243


>gi|328882378|emb|CCA55617.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 23/234 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDV 82
           G +  +   V R++EG+ ++L +G  G W + +    +    +  +V+       ++  +
Sbjct: 21  GPEGRHAVSVKRLREGEELVLADG-GGRWAACVVLAAEGKDQLTVRVDEVHEDPAEEPRI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAE 136
             + +  K +R +  ++   E G+ AI P      IT++  +     + + R+    A +
Sbjct: 80  TVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGDRGLKALAKWRSTAREAGK 139

Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---V 190
           Q      P +  P T   +  LL   D     V  ++      +L    A A +P    +
Sbjct: 140 QSRRSRFPEVAEPMTTKQVAALLAGADFAA--VLHEDRDHPSGAL----ATAELPAKGAI 193

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +++GPEGG   EE     +     P  LG  +LR+ TA  AA ALV    G W
Sbjct: 194 VLVVGPEGGVSPEELAVFEAA-GAKPYRLGRSVLRTSTAGTAATALVLGRTGRW 246


>gi|118468490|ref|YP_888775.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169777|gb|ABK70673.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 246

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 10/210 (4%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQY 84
           GD+ H+ A+V R++ G+ I L +G        +    K S+  ++  Q      +  V  
Sbjct: 22  GDEGHHAANVRRIRVGERIDLSDGAGTLAHCVVENTAKGSVSARITEQVTLPPARPSVTV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K++R +  I+ + E G  A       R V           + R      SAA Q 
Sbjct: 82  VQALPKSDRSELAIELATEAGADAFVAWQSARCVARWDGPKADKGLRRWSAVARSAARQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               +P +    +   LL+       +V A     +    E    +A   +V ++IGPEG
Sbjct: 142 RRAYIPTVTGVESTRDLLRRIASTDSVVLALHESATAPFAEI--PVAQSDSVILIIGPEG 199

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           G   +E   L        + LGP +LR+ T
Sbjct: 200 GIADDEIAALTDA-GAHAVRLGPTVLRTST 228


>gi|283955603|ref|ZP_06373096.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792828|gb|EFC31604.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 27/214 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSRSQTKQSDV 82
           G+ +++L  V R+KE   + L N +D  +L   +       S   K+  +     KQS++
Sbjct: 18  GENFNHLK-VRRVKENSELNLRNLQDN-FLYNYTITNLTRNSCTLKLLNKKSQNIKQSEL 75

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDIL 141
               + I    L+  +    E+G+  +  V T ++Q N   +++R     IS+ EQC   
Sbjct: 76  NLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCGRN 135

Query: 142 T-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGG 199
           T +  I   +T EF+ K + +   + F  E              +H     +  IGPEGG
Sbjct: 136 TKMDLIIHQSTQEFVQK-FPNAIMVDFQGEQQ------------SHFDEKELYFIGPEGG 182

Query: 200 YHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVA 232
           + + E+     L F    SL    IL+S TA +A
Sbjct: 183 FSNNER-----LLFNRKTSLKSSNILKSQTAIIA 211


>gi|225458830|ref|XP_002285308.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 266

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 33/187 (17%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D+  Y+ H +    G   +L + +  E  +K+  +G S RF  ++      ++ +++ +F
Sbjct: 88  DRCAYVGHSVSAMIG---ILASIRRPELFTKLVLIGASPRFLNDHDYHGGFEEGEIEKVF 144

Query: 87  SPIKTNRLDYMIQKSVEMGMGA---------------IRPVITRYTQNTHYNMDRVRTYT 131
           S ++ N  D  +     + +GA               +RP IT +   T +N D      
Sbjct: 145 SAMEAN-YDAWVHGFAPLSVGADVPAAVREFSRTLFNMRPDITLFVSRTIFNSDLRGVLG 203

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           +     C I T   +  PT++   LKN              G  N++E L+   H+P+++
Sbjct: 204 LVKVPCCIIQTAKDVSVPTSVALYLKN------------HLGGRNTVEMLNVEGHLPHLS 251

Query: 192 --ILIGP 196
             +L+ P
Sbjct: 252 APMLLAP 258


>gi|260903866|ref|ZP_05912188.1| 16S ribosomal RNA methyltransferase RsmE [Brevibacterium linens
           BL2]
          Length = 248

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +++GPEGG    E E L ++   T L LGP +LRS +A  A + + Q   G W
Sbjct: 194 RIVLVVGPEGGISDAELEALSAIGADTVL-LGPTVLRSSSAGAAGLVMAQNSLGRW 248


>gi|225021770|ref|ZP_03710962.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945466|gb|EEG26675.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +A + +V ++IGPEGG    E +   +     P+ LGP +LR+ +A + A+A + A+   
Sbjct: 180 VAQVDSVVLIIGPEGGISPAELDAFTAA-GARPVRLGPEVLRTASAGMVALAALGAVTDR 238

Query: 244 W 244
           W
Sbjct: 239 W 239


>gi|109947089|ref|YP_664317.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter acinonychis
           str. Sheeba]
 gi|109714310|emb|CAJ99318.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 226

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 21/237 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKSIRFK 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KD    +   +    K    +
Sbjct: 3   FVYHPLAKEPTLKIEGESYTHLYRSRRIKSASGLDLRNLKDSFLYTYEHVEITKKHALLR 62

Query: 69  VEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
           +  Q   +   S     I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGQKELEIMASKKTHLILSVIEVKSIEKILPFLNQLGVNKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I++ EQC    L  +   +  + +LK +   C + F  +   +  S EK   
Sbjct: 123 LERFQKILINSCEQCGRGALMELEVFSNTKEMLKAYPKACVLDFNGKMLQTNFSAEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +EK        +  PL +   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSKQEKGQFKEREIYRIPLDM---VLKSESACVFVASITQV 226


>gi|139474464|ref|YP_001129180.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           str. Manfredo]
 gi|134272711|emb|CAM30983.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 249

 Score = 43.1 bits (100), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L ++DH   I  A E       L  L   +  + P   IL   GP
Sbjct: 143 PEVHLFEQKTEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG    E     +   +  + LGPRI+R++TA + A++
Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237


>gi|317180814|dbj|BAJ58600.1| hypothetical protein HPF32_1018 [Helicobacter pylori F32]
          Length = 226

 Score = 43.1 bits (100), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 27/239 (11%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK-- 68
           FV  PL  +   K  G+ Y +L    R+K   ++ L N KDG      +Y    I  K  
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASHLDLRNLKDGFLY---TYEHAEITKKHA 59

Query: 69  ----VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
               V  Q+           I S I+   ++ ++    ++G+  +      ++Q      
Sbjct: 60  LLKLVGAQTLEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKID 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           +  ++R +   I + EQC    L  +   +  +  LK +     + F  ET  +    EK
Sbjct: 120 NAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASVDFEK 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                      ++IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 ----------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|19746890|ref|NP_608026.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS8232]
 gi|19749135|gb|AAL98525.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 249

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL----HAIAHIPNVAILIGP 196
           P ++      EFL  L ++DH   I  A E       L  L      +     +  + GP
Sbjct: 143 PEVHLFEQKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKLGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +   +  + LGPRI+R++TA + A++++
Sbjct: 200 EGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSVL 239


>gi|297380257|gb|ADI35144.1| conserved hypothetical protein [Helicobacter pylori v225d]
          Length = 226

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             V  Q+        +  I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMASKKMHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +   +  +  L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFSNTKEALNAYPKASVLDFKGETLPASVGFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSGQERECFKEREIYRIPLDM---VLKSESACVFMASVAQ 225


>gi|203283988|ref|YP_002221728.1| hypothetical protein BDU_66 [Borrelia duttonii Ly]
 gi|201083431|gb|ACH93022.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 239

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIP 188
           Y I  A Q  I  +P I     L  +L+N  D+N           S+N L  L+      
Sbjct: 128 YLIKGAMQGGITYIPKIKIFNNLIEVLENIKDNNFNTTKILLERNSKNKLIDLNI--KTE 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           NV ++IGPE G+ ++E   +    F T  ++ P IL+++TA + A  ++ +   D
Sbjct: 186 NVVVIIGPERGFITKETNLIKKYNFNT-YNISPNILKTETATIVASTIITSKIND 239


>gi|323126439|gb|ADX23736.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 252

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGTSALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGP 196
           P ++      EFL  L ++DH   I  A E       L     +L  +     +  + GP
Sbjct: 143 PEVHLFEQKAEFLKSLSSFDH---IFIAYEETAKAGQLATLARELKEVKPGAKLLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +   +  + LGPRI+R++TA + A++ +
Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSAI 239


>gi|21911245|ref|NP_665513.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS315]
 gi|28896621|ref|NP_802971.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           SSI-1]
 gi|21905458|gb|AAM80316.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811875|dbj|BAC64804.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GPEGG 199
           P ++        LKN      I  A E       L  L   +  + P   +L   GPEGG
Sbjct: 143 PEVHLFEQKAEFLKNLSSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               E     +   +  + LGPRI+R++TA + A++
Sbjct: 203 ISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237


>gi|94991269|ref|YP_599369.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS10270]
 gi|94544777|gb|ABF34825.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GPEGG 199
           P ++        LKN      I  A E       L  L   +  + P   IL   GPEGG
Sbjct: 143 PEVHLFEQKAEFLKNLPSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               E     +   +  + LGPRI+R++TA + A++
Sbjct: 203 ISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237


>gi|315654888|ref|ZP_07907793.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC
           51333]
 gi|315490849|gb|EFU80469.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC
           51333]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++A+++GPEGG  + E  T        P  LGP +LR  +A  AA+A++Q+  G W
Sbjct: 238 DIAVIVGPEGGITAPEL-TAFIAAGARPALLGPTVLRCSSAGPAALAVIQSQLGSW 292


>gi|315222477|ref|ZP_07864375.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211]
 gi|315188445|gb|EFU22162.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 20/242 (8%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V+ P+ I+ +     D   ++  V+R+ E D ++L      + L+++S   + +   VE 
Sbjct: 10  VENPVIIRDK-----DTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVLNLVEE 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMD 125
              +      V       K ++L+++ QK+ E+G  AI      ++      +      +
Sbjct: 65  LPDNAELPIHVTVASGFPKGDKLEWVAQKATELGATAIWAFPADWSVAKWDGKKLAKKAE 124

Query: 126 RVRTYTISAAEQCDILTLPFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKLH 182
           ++    + AAEQ     +P +      ++FL  L  +D    IV  +E+     S   + 
Sbjct: 125 KLEKIVLGAAEQSKRNRVPEVRLFEKKIDFLDCLSQFDR--VIVAYEESAKEGESAALVK 182

Query: 183 AIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           A+  +     +  + GPEGG    E  TL     +    LGPRILR++TA + A++ V  
Sbjct: 183 AVTGLKIGSRILFVFGPEGGLSPAEITTLEEAGAILA-GLGPRILRTETAPLYALSAVSV 241

Query: 240 IC 241
           + 
Sbjct: 242 LI 243


>gi|320547793|ref|ZP_08042077.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447553|gb|EFW88312.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 246

 Score = 42.7 bits (99), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYI 85
           D   ++ +V+R+ E + ++L      + L+K+    +  RF++  +  S  +   +V   
Sbjct: 20  DTVKHMFNVMRLTEDEEVVLVFDDHIKRLAKVVDSAEH-RFEIIKELNSNVEMPVEVTIA 78

Query: 86  FSPIKTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
               K ++L+++ QK  E+GM       A   V+    +      D++    I AAEQ  
Sbjct: 79  AGFPKGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKKLAKKADKLAKIAIGAAEQSK 138

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIG 195
              +P +         L   D   +I  A E    E        +L  +     +  + G
Sbjct: 139 RNVIPGVTLFDKKAAFLAELDQFDKIFIAYEESAKEGETAILARELSQVKAGEKILFIFG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG   +E         +  + LGPRI+R++TA + A++ V
Sbjct: 199 PEGGISPDEIVAFEEKGGLK-IGLGPRIMRAETAPLYALSSV 239


>gi|153951044|ref|YP_001397414.1| hypothetical protein JJD26997_0171 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938490|gb|ABS43231.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 22/134 (16%)

Query: 103 EMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILT-LPFIYPPTTLEFLLKNWD 160
           E+G+  +  V T ++Q N   +++R     IS+ EQC   T +  I   +T EF+ K  D
Sbjct: 96  ELGVKKLHLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPD 155

Query: 161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAI-LIGPEGGYHSEEKETLHSLPFVTPLSL 219
               + F  E              +H     +  IGPEGG++++EK     L F   +SL
Sbjct: 156 A-IMVDFQGEQQ------------SHFDEKELYFIGPEGGFNNDEK-----LLFNRKISL 197

Query: 220 -GPRILRSDTAAVA 232
               IL+S TA +A
Sbjct: 198 KNSNILKSQTAIIA 211


>gi|306821074|ref|ZP_07454692.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550910|gb|EFM38883.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 249

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F+D  +  KT      +   +++ VLR+   D + + + +  E++ KI  + K+  
Sbjct: 5   MNRFFID-EVAGKTNNIIDKEDIKHISKVLRLDIDDEVEIVDREKKEYIMKIVDI-KNDN 62

Query: 67  FKVEYQSRSQTKQSD----VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             +E  S    ++ D    + Y   P K ++L+ + + + + G+  I PV  +    T  
Sbjct: 63  ICLEKVSSVDIQREDEIKVILYQGIP-KGSKLEDICKNTTQAGIYQIIPVRFKRCVATDV 121

Query: 123 N---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVF-ADETCGS-EN 176
           N   + R++     +A+QC    +P I  P + + ++K+ + N   I+F  DE   +  +
Sbjct: 122 NDKKIQRLQKIMDESAKQCKRNEIPEIKMPLSFDEMMKDLEENDANILFYEDERNNTIRD 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++++     +  + I+IGPEGG   +E E +     +  LSLG RILR++ A++ A ++
Sbjct: 182 FVQRIREKKDMKRIGIIIGPEGGIDEKELEVMKK-GDIDILSLGNRILRTEIASIIAKSI 240

Query: 237 V 237
           +
Sbjct: 241 L 241


>gi|308063864|gb|ADO05751.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Sat464]
          Length = 226

 Score = 42.4 bits (98), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 27/239 (11%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGVQALEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            ++R +   I + EQC    L    ++P T  + +L  +     + F  ET  +    EK
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFPNT--KEVLNAYPKASVLDFKGETLPASVGFEK 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                      ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++VQ
Sbjct: 180 ----------GVIIGPEGGFSGQERGCFKEREIYRIPLDM---VLKSESACVFVASVVQ 225


>gi|251781649|ref|YP_002995951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390278|dbj|BAH80737.1| hypothetical protein SDEG_0220 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 17/161 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNVV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L ++DH   I  A E       L  L   +  + P   +L   GP
Sbjct: 143 PEVHLFEQKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKLLFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EGG    E     +   +  + LGPRI+R++TA + A++ +
Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSAI 239


>gi|305681207|ref|ZP_07404014.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659412|gb|EFM48912.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +A + +V ++IGPEGG    E +   +     P+ LGP +LR+ +A + A+A + A+   
Sbjct: 180 VAQVDSVVLIIGPEGGISPAELDAFTAA-GAHPVRLGPEVLRTASAGMVALAALGAVTDR 238

Query: 244 W 244
           W
Sbjct: 239 W 239


>gi|261839813|gb|ACX99578.1| hypothetical protein HPKB_1009 [Helicobacter pylori 52]
          Length = 226

 Score = 42.4 bits (98), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 37/244 (15%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSKISYVG 62
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG        E   K + + 
Sbjct: 3   FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH- 121
                K+E  +  +T       I S I+   ++ ++    ++G+  +      ++Q    
Sbjct: 63  LVGGRKLEVMASKKT-----HLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEK 117

Query: 122 ---YNMDRVRTYTISAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                ++R +   I + EQC    ++ L     P T E +LK +     + F  ET  + 
Sbjct: 118 IDSAKLERFQKILIHSCEQCGRSALMELEVF--PNTKE-VLKAYPKASVLDFKGETLPAS 174

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234
              EK           ++IGPEGG+   E+E       +  PL +   +L+S++A V   
Sbjct: 175 VGFEK----------GVIIGPEGGFSEPEREYFKEREIYRIPLDM---VLKSESACVFVA 221

Query: 235 ALVQ 238
           ++ Q
Sbjct: 222 SIAQ 225


>gi|319957587|ref|YP_004168850.1| hypothetical protein Nitsa_1856 [Nitratifractor salsuginis DSM
           16511]
 gi|319419991|gb|ADV47101.1| protein of unknown function DUF558 [Nitratifractor salsuginis DSM
           16511]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 19/231 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70
           F+  P    +Q    G+ Y YL  V R++  D + L N +D    +  +      R ++ 
Sbjct: 3   FLYHPEAGASQLLLEGESYRYLFKVRRLRSEDPLHLRNMRDDCLYTYRTETLDRRRARIA 62

Query: 71  YQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDR 126
             S    K      +   +  I    ++  +    EMG+  I  V    +Q     + +R
Sbjct: 63  LVSCRDLKIVLNRKLHLGWCQIDPRNVEKTLPALNEMGVFGITFVRCERSQRQFEPDFER 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--CGSENSLEKLHAI 184
           +    I++++QC    L  +    +LE  L+       + F+D    CG + +       
Sbjct: 123 LERILINSSQQCGRSELMRLETAESLEAFLERHPEAMLLDFSDRRLPCGGDWT------- 175

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                 +I++G EGG+  EE+  L S   +  L   P ILRS+TA  AA A
Sbjct: 176 ----ERSIVVGCEGGFTPEER-ALFSEERIFGLE-TPTILRSETAVCAAAA 220


>gi|308062356|gb|ADO04244.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Cuz20]
          Length = 226

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 29/240 (12%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCD---ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            ++R +   I + EQC    ++ L     P T E +LK +     + F  ET  +    E
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVF--PNTKE-MLKAYPKASVLDFKGETLPASVGFE 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
           K           ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 179 K----------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|42528220|ref|NP_973318.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC
           35405]
 gi|41819490|gb|AAS13237.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC
           35405]
          Length = 278

 Score = 42.4 bits (98), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +V I IG E G+   E++   S  F+ P S+G RILR++TA  +A++++ A  G W
Sbjct: 223 SVLITIGSERGWTQNERDVFFSEGFI-PYSMGKRILRTETALTSALSVLLANNGFW 277


>gi|291548149|emb|CBL21257.1| RNA methyltransferase, RsmE family [Ruminococcus sp. SR1/5]
          Length = 95

 Score = 42.4 bits (98), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAV 231
           G + + E + +I    ++ + IGPEGG+  EE+E   ++     P++LG RILR++TA +
Sbjct: 25  GMKETKELIRSIEPGKSIGVFIGPEGGF--EEQEVADAMEAGAKPITLGHRILRTETAGL 82

Query: 232 AAMALV 237
           A ++++
Sbjct: 83  AVLSVL 88


>gi|307637746|gb|ADN80196.1| Ribosomal RNA small subunit methyl transferase E [Helicobacter
           pylori 908]
 gi|325996346|gb|ADZ51751.1| Ribosomal RNA small subunit methyltransferase E [Helicobacter
           pylori 2018]
 gi|325997935|gb|ADZ50143.1| 16S ribosomal RNA methyltransferase [Helicobacter pylori 2017]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             V  Q            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQPLGVIPSKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +   +  + +L  +     + F  E   +  + EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSVLMELEAFSNTKEVLNAYPKASVLDFNGEALPASANFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    I+IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GIIIGPEGGFSEQEREYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225


>gi|209878384|ref|XP_002140633.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris
           RN66]
 gi|209556239|gb|EEA06284.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris
           RN66]
          Length = 377

 Score = 42.0 bits (97), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ------CDILTLPFIY 147
            D ++Q +  +G+G I  V T  ++ ++ N  ++   +I  + Q      C+ L  P +Y
Sbjct: 168 FDKVLQYAASIGVGRIIFVCTNKSEKSYLNSSKLHRESIHHSIQLGLEQACNTL-FPEVY 226

Query: 148 P----PTTLEFLLKNW-DHNCQI-VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
                 + L++L  ++ D N  + + AD    S   +  +    H  +  I +GPEGG+ 
Sbjct: 227 LYASWNSCLKYLRDDFLDKNTMLGIIADNK--SSTIISDVGLQRHTGSAIIAVGPEGGWS 284

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             E   L  L F +  S+G R+L+ + A +A  + V+ +  D
Sbjct: 285 QSEIGDLIGLGFKS-CSIGSRVLKVEAAMIALCSQVELLLRD 325


>gi|15675777|ref|NP_269951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes M1
           GAS]
 gi|71911507|ref|YP_283057.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS5005]
 gi|13623001|gb|AAK34672.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71854289|gb|AAZ52312.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L ++DH   I  A E       L  L   +  + P   IL   GP
Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG    E     +   +  + LGPRI+R++TA + A++
Sbjct: 200 EGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALS 237


>gi|317182333|dbj|BAJ60117.1| hypothetical protein HPF57_1043 [Helicobacter pylori F57]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVVASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|302142202|emb|CBI19405.3| unnamed protein product [Vitis vinifera]
          Length = 167

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 30/161 (18%)

Query: 53  EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGA---- 108
           E  +K+  +G S RF  ++      ++ +++ +FS ++ N  D  +     + +GA    
Sbjct: 12  ELFTKLVLIGASPRFLNDHDYHGGFEEGEIEKVFSAMEAN-YDAWVHGFAPLSVGADVPA 70

Query: 109 -----------IRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157
                      +RP IT +   T +N D      +     C I T   +  PT++   LK
Sbjct: 71  AVREFSRTLFNMRPDITLFVSRTIFNSDLRGVLGLVKVPCCIIQTAKDVSVPTSVALYLK 130

Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA--ILIGP 196
           N              G  N++E L+   H+P+++  +L+ P
Sbjct: 131 NH------------LGGRNTVEMLNVEGHLPHLSAPMLLAP 159


>gi|326773557|ref|ZP_08232840.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505]
 gi|326636787|gb|EGE37690.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505]
          Length = 270

 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 97/241 (40%), Gaps = 23/241 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---KSIRFKVEYQSRSQTKQSD 81
           +G +  +   V R++  + + L +G     + +++  G      R  V    R +  +  
Sbjct: 31  TGPEARHAVTVKRLRAQERVDLVDGAGLRLVCEVTGAGVGGAKDRLAVRVLERVEEPEPS 90

Query: 82  VQYIF--SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133
           ++     +  K  R +  ++ + E+G+G + P      V             R +   + 
Sbjct: 91  LRLTLVQALAKGGRDEQAVETATEVGVGLVLPWQSERCVSVWQGAKQAKGRQRWQATALQ 150

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGS-ENSLE--KLHAI 184
           AA+Q     +P +        L+ +W           +V  +E       ++E  +L A 
Sbjct: 151 AAKQARRARVPEVEEVRDTRRLV-DWVGQTVRGGGVVLVLHEEASTPISTAMESVRLPAP 209

Query: 185 AHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              P  +A+++GPEGG   EE   L +    T + LGP ++R+ +A   A+A++    G 
Sbjct: 210 GEAPRALAVVVGPEGGISPEETAALETA-GATTVRLGPHVMRTASAGPVALAVLAHASGL 268

Query: 244 W 244
           W
Sbjct: 269 W 269


>gi|306826580|ref|ZP_07459887.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304431218|gb|EFM34220.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L ++DH   I  A E       L  L   +  + P   IL   GP
Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG    E     +   +  + LGPRI+R++TA + A++
Sbjct: 200 EGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALS 237


>gi|300858951|ref|YP_003783934.1| hypothetical protein cpfrc_01534 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686405|gb|ADK29327.1| hypothetical protein cpfrc_01534 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206652|gb|ADL10994.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           pseudotuberculosis C231]
 gi|302331201|gb|ADL21395.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276895|gb|ADO26794.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           pseudotuberculosis I19]
          Length = 256

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 28/236 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFN--GKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83
           G +  +   V R+  G+ I L +  G   E L   +     +  +VE  S +Q+      
Sbjct: 32  GAEGRHAVSVKRIVAGERIKLIDAHGAYAEALVTETSGKDRLAARVEI-SETQSPVGPSV 90

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136
            +F  I K+ R +  +    + G+ AI P      + +++      ++ + R   ++AA+
Sbjct: 91  TVFQAIPKSERSELAVDLLTQGGVDAIVPWEAQRCVAKWSGTKREKSVQKWRAAAVAAAK 150

Query: 137 QCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----- 188
           Q     +P I  P   + L   LK    +  ++  ++            A A +P     
Sbjct: 151 QSRRSAIPTIGSPINTSELALRLKTEGFDLVLMLHEDAQ---------QAFAALPLQQAS 201

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++A++IGPEGG   EE   L +        LGP +LR+ +A + A+A +  +   W
Sbjct: 202 SIALIIGPEGGIGQEESSELQA-AGARLAKLGPEVLRTASAGIVALAAIGVLTSRW 256


>gi|111221445|ref|YP_712239.1| 16S ribosomal RNA methyltransferase RsmE [Frankia alni ACN14a]
 gi|111148977|emb|CAJ60657.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 255

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 188 PNVA----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PN A    +++GPEGG    E + LH    V    LGP +LR+ TA V A ++V A  G 
Sbjct: 189 PNPAAEILLVVGPEGGIADAEVDALHQAGAVV-ARLGPTVLRTSTAGVVASSVVLADLGR 247

Query: 244 W 244
           W
Sbjct: 248 W 248


>gi|311741359|ref|ZP_07715183.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303529|gb|EFQ79608.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 252

 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 25/236 (10%)

Query: 10  LFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGK-S 64
           +F+   L     G+A   SG +  +   V RM EG+ + L +G      L+  +  GK S
Sbjct: 5   VFIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDS 64

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +   V+    +      V  + +  K+ R +  +  + + G   I      R V     +
Sbjct: 65  LEGTVDSIDTAPVPTPRVSVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGK 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + + +    SAA+Q     +P +  P T   L++           D    +  ++
Sbjct: 125 KAPKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLVQELTGG-----RDGASSNAPTV 179

Query: 179 EKLH-----AIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             LH     +I  +P   +V +L+GPEGG    E + L      TP+ LGP +LR+
Sbjct: 180 LVLHEEATVSIKDVPLADDVVLLVGPEGGIGDAELDRLKEA-GATPIKLGPEVLRT 234


>gi|56808290|ref|ZP_00366055.1| COG1385: Uncharacterized protein conserved in bacteria
           [Streptococcus pyogenes M49 591]
 gi|209560117|ref|YP_002286589.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           NZ131]
 gi|209541318|gb|ACI61894.1| hypothetical protein Spy49_1637c [Streptococcus pyogenes NZ131]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GPEGG 199
           P ++        LKN      I  A E       L  L   +  + P   IL   GPEGG
Sbjct: 143 PEVHLFEHKAEFLKNLPSFDHIFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               E     +   +  + LGPRI+R++TA + A++
Sbjct: 203 ISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237


>gi|94989324|ref|YP_597425.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS9429]
 gi|94993212|ref|YP_601311.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS2096]
 gi|94542832|gb|ABF32881.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429]
 gi|94546720|gb|ABF36767.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 17/159 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L ++DH   I  A E       L  L   +  + P   IL   GP
Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG    E     +   +  + LGPRI+R++TA + A++
Sbjct: 200 EGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALS 237


>gi|297626078|ref|YP_003687841.1| hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921843|emb|CBL56403.1| Hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 13/213 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQSDVQ 83
           G +  + A V RM+ G+++L+ +G        I  V K S+  +V E  +R       V 
Sbjct: 23  GPEGRHAATVKRMRVGESVLVADGAGAGLRGVIDSVAKNSVSVRVGELIARRPAALHTV- 81

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
            + +  K  R D  ++   E+G+  I        I R+       + + R+   +A +Q 
Sbjct: 82  AVQALAKGERSDIAVEAMTELGVDEIIAWQASRSIVRWEAKAEKGLAKWRSSARAATKQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               +P +    T   + +    +  +V  +E     + L    ++        +IGPEG
Sbjct: 142 RRFRIPQVSTAGTPGVVERLARADLALVLHEEATTPLSGL----SVPSAGECVFVIGPEG 197

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           G   EE E          +SL   +LR+ TA V
Sbjct: 198 GISPEELEAFRGA-GARLVSLSDAVLRASTAGV 229


>gi|15612072|ref|NP_223724.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori J99]
 gi|8928475|sp|Q9ZKD2|RSME_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|4155595|gb|AAD06587.1| putative [Helicobacter pylori J99]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGVQPLEIMANKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +   +  +  LK +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSVLMELEAFSNTKEALKAYPKASVLDFNGETLPASADFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225


>gi|257483560|ref|ZP_05637601.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
          pv. tabaci ATCC 11528]
          Length = 88

 Score = 41.6 bits (96), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 7  LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
          L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK
Sbjct: 3  LSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGK 58


>gi|224370617|ref|YP_002604781.1| 16S ribosomal RNA methyltransferase RsmE [Desulfobacterium
           autotrophicum HRM2]
 gi|223693334|gb|ACN16617.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 236

 Score = 41.6 bits (96), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +V + +GPEGG+   E +T   L F T ++LGPRILR +TA
Sbjct: 187 SVTLAVGPEGGFIQREVDTFEQLGF-TSVTLGPRILRVETA 226


>gi|306818068|ref|ZP_07451799.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304649032|gb|EFM46326.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 342

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +A+++GPEGG    E E   ++     L LG  +LR  TA   A+A++QA  G W
Sbjct: 288 EIAVVVGPEGGITEGELEGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 342


>gi|942589|gb|AAC44027.1| unknown [Mycoplasma iowae]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 103 EMGMGAIRPVITRYTQNTHY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161
           E+ +  I PV+   +QN  Y +  R+    + + +Q + +    I      + LL+    
Sbjct: 4   ELNISKIVPVVFSRSQNNIYLDYKRLNRIVVESCKQSNRVNPLIIENQIKFDELLEKIKG 63

Query: 162 NCQIVFAD-ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220
           +   + ++ ET  + N+ +       I N   +IG EGG+  +E   L+SL    P++L 
Sbjct: 64  STTFLCSEKETSKNINNYDLKIKNGDIIN--FIIGCEGGFTIDELNQLNSLTL--PITLT 119

Query: 221 PRILRSDTAAVAAMALV 237
             ILRS+TAA+ A +++
Sbjct: 120 KTILRSETAAIYAASIL 136


>gi|38234290|ref|NP_940057.1| hypothetical protein DIP1719 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200553|emb|CAE50248.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 36/239 (15%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTKQSDVQ 83
           G +  +   V RM  G+ I L +G+ G W +    S  GKS      ++   +   +   
Sbjct: 30  GAEGRHAVSVKRMTAGEQIKLIDGRGG-WATATVASTSGKSTLNLQVFECNEEATPTPTV 88

Query: 84  YIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            +F  I K+ R +  +    + G  AI P          +   R     + A     +L 
Sbjct: 89  TVFQAIPKSERSELAVDLLTQGGADAIVP----------WEAHRCVAKWVGAKRSKGVLK 138

Query: 143 ----------------LPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185
                           +P I  P T   + +  +  +  +V  ++      +++    ++
Sbjct: 139 WQQAAIAAAKQSRRTRIPEIAEPMTTAQIAEQLEQFDVVLVLHEDAAVPFATVD----VS 194

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              ++A++IGPEGG   +E E          + LGP +LR+ +A + A+A +      W
Sbjct: 195 TAKSIALIIGPEGGVSPDEAEAFRKA-GARAVKLGPEVLRTASAGIVALAALGVQTSRW 252


>gi|217034479|ref|ZP_03439891.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10]
 gi|216943081|gb|EEC22558.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKI 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC   TL  +      +  LK +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSTLMELEVFLNTKEALKAYPKASVLDFKGETLPASVDFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+        +  PL +   +L+S+ A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSGQERGYFKEREIYRIPLDM---VLKSENACVFVASVAQ 225


>gi|71904341|ref|YP_281144.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS6180]
 gi|71803436|gb|AAX72789.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L  +DH   I  A E       L  L   +  + P   IL   GP
Sbjct: 143 PEVHLFEHKAEFLKSLSGFDH---IFVAYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG    E     +   +  + LGPRI+R++TA + A++
Sbjct: 200 EGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALS 237


>gi|94995181|ref|YP_603279.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS10750]
 gi|94548689|gb|ABF38735.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 90  KTNRLDYMIQKSVEMGMGAIR------PVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK  E+G  A+        V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKLAKKEDKLAKIVLGAAEQSKRNRV 142

Query: 144 PFIYP-PTTLEFL--LKNWDHNCQIVFADETCGSENSLEKL-HAIAHI-PNVAILI--GP 196
           P ++      EFL  L ++DH   I    E       L  L   +  + P   IL   GP
Sbjct: 143 PEVHLFEHKAEFLKSLSSFDH---IFIGYEETAKAGQLATLAREVKEVKPGAKILFIFGP 199

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           EGG    E  T      V  + LGPRI+R++TA + A++
Sbjct: 200 EGGISPAEI-TQFEAAGVIKVGLGPRIMRAETAPLYALS 237


>gi|203287531|ref|YP_002222546.1| hypothetical protein BRE_65 [Borrelia recurrentis A1]
 gi|201084751|gb|ACH94325.1| uncharacterized conserved protein [Borrelia recurrentis A1]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIP 188
           Y I  A Q  I  +P I     L  +L+N  D N           S+N L  L+      
Sbjct: 128 YLIKGAMQGGITYIPKIKIFNNLIEVLENIKDDNFNTTKILLERNSKNKLIDLNI--KTE 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           NV ++IGPE G+ ++E   +    F T  ++ P IL+++TA + A  ++ +   D
Sbjct: 186 NVVVIIGPERGFITKETNLITKYNFNT-YNISPNILKTETATIVASTIITSKMND 239


>gi|307127980|ref|YP_003880011.1| hypothetical protein SP670_1859 [Streptococcus pneumoniae 670-6B]
 gi|306485042|gb|ADM91911.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 15/224 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP- 88
            ++  V+R+KE D + L      + L+++  V ++ +F++  +      +  VQ   S  
Sbjct: 23  KHMFQVMRLKEDDEVTLVFDDGIKRLARVLDV-EARQFEL-VEELDDNVELPVQVTISSG 80

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
             K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ    
Sbjct: 81  FPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRN 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPE 197
            +P I+        L   D   +I+ A E    E     L  A+  +   A L+   GPE
Sbjct: 141 VVPSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAALIKAVTGLEKGAKLLFIFGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG    E E   +   V    LGPRILR++TA + A++ +  + 
Sbjct: 201 GGLSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSALSVLL 243


>gi|317012853|gb|ADU83461.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Lithuania75]
          Length = 226

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPILKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I++ EQC    L  +   +  + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILINSCEQCGRSALMELEVFSNTKEMLNAYPKASVLDFNGETLPASADFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+   E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSEPEREYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225


>gi|225164860|ref|ZP_03727082.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
 gi|224800529|gb|EEG18903.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
          Length = 169

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 100 KSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           ++  +G+ AI  V T      Y  +T ++    R + + AA+Q     LP +    TL  
Sbjct: 22  EATTLGVRAIHFVTTEKTDPNYASSTLWSSGEWRRHLVDAAQQAFDTRLPLVTWDRTLAQ 81

Query: 155 LLKNW------DHNCQIVFAD-ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
           +L +       D   ++   + E      SL +  A     +  + IGPE G+   +++ 
Sbjct: 82  ILSDAVGDDVSDSPLRVALDNYEATVGLRSLTRQTAT----DACVAIGPERGWGERDRQQ 137

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           L +  F T   LGPR+LR +T  VAA+    A
Sbjct: 138 LRAAGF-TLAHLGPRVLRVETPVVAALPFFSA 168


>gi|313157414|gb|EFR56837.1| RNA methyltransferase, RsmE family [Alistipes sp. HGB5]
          Length = 237

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 25/219 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDV 82
           S ++  +   VLR+  GD + + +G+   +  +I+    K    +V E ++  +     +
Sbjct: 17  SEEESKHCVRVLRLGRGDTLHITDGRGNLFCCEITDDNPKRCTVRVTETRAGWEALPYSL 76

Query: 83  QYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
               +P K  +R ++ ++K+ E+G+G I P+ T + +   +  +R      +A +Q    
Sbjct: 77  TMAVAPTKNADRFEWFLEKATEVGVGTIIPLETEHCERRVFKPERGERVITAAMKQSLKA 136

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGSENSLEKLHAIAHIPN-------V 190
             P + P       L  +     + F        C    S E     A++P         
Sbjct: 137 YRPTLRP-------LTPFGEAAAMPFEGRKFIAHCAPAQSPE---GKAYLPATLRRGEAA 186

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            ILIGPEG +  EE     +  F   ++LG + LR++TA
Sbjct: 187 LILIGPEGDFSPEEIAFARANGFEE-ITLGAQRLRTETA 224


>gi|271963819|ref|YP_003338015.1| hypothetical protein Sros_2291 [Streptosporangium roseum DSM 43021]
 gi|270506994|gb|ACZ85272.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 243

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
            G +  + A V R++ G+ + L +G        +   G+ S+R +V  +      +  + 
Sbjct: 21  GGPEGRHAAAVRRLRAGERLDLTDGAGTVAECVVRDAGRDSLRVEVLRRYEVAAPRPRLV 80

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAEQ 137
            +    K +R +  ++   E G+  I P      +T++  +    +++R R+    A +Q
Sbjct: 81  VVQGLPKGDRGELAVEMMTEAGVDVIVPWAAARCVTQWKGERAVKSLNRWRSTAREAGKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                LP +  P T   ++         V   E   S  S  +L     I  V    G  
Sbjct: 141 SRRFHLPEVTEPATTAGVVALLSAAALGVVLHEEAASPLSTLELPGAGDIVVVVGPEG-- 198

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               ++E+          P  LGP +LR+ TA VAA A++Q   G W
Sbjct: 199 --GVADEEIGAFREAGAVPALLGPTVLRTSTAGVAAAAVLQTRTGRW 243


>gi|269976809|ref|ZP_06183784.1| protein involving differentiation [Mobiluncus mulieris 28-1]
 gi|269935006|gb|EEZ91565.1| protein involving differentiation [Mobiluncus mulieris 28-1]
          Length = 337

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +A+++GPEGG    E E   ++     L LG  +LR  TA   A+A++QA  G W
Sbjct: 283 EIAVVVGPEGGITEGELEGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 337


>gi|331082512|ref|ZP_08331637.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400490|gb|EGG80120.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 151

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R FV+       Q   SG   +++ +VLRMK  + IL+ +G+D E+   I  +G+     
Sbjct: 3   RFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEILA 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITR 115
            + Y   +  + S   Y+F  + K+++++ +IQK+VE+G+  + PV ++
Sbjct: 63  HIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVASK 111


>gi|307330999|ref|ZP_07610130.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu
           4113]
 gi|306883385|gb|EFN14440.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu
           4113]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 12/227 (5%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--VQ 83
           G +  +   V R++ G+ ++L +G        ++ V    R ++      Q    D  + 
Sbjct: 24  GPEGRHAVSVRRLRVGEPVVLTDGHGTGVQGTVAAVEGKDRLQIAVDEVRQEAAPDPRIT 83

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAEQ 137
            + +  K +R +  ++   E G+ A+ P      IT++        + + R+    A +Q
Sbjct: 84  VVQALPKGDRGELAVETMTETGVDAVVPWSASRCITQWKGERGLKALGKWRSTAREAGKQ 143

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
              LT P +    T + +              E  G   +  +L A   I    +++GPE
Sbjct: 144 SRRLTFPEVPDAMTTKQVALLLAEAAFAAVLHEEGGEPLASAQLPARGEI---VLVVGPE 200

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GG   EE           P  LGP +LR+ TA  AA AL+    G W
Sbjct: 201 GGVSPEELAAFAEA-GARPYRLGPSVLRTSTAGTAAAALLLGRTGRW 246


>gi|145223290|ref|YP_001133968.1| hypothetical protein Mflv_2703 [Mycobacterium gilvum PYR-GCK]
 gi|315443750|ref|YP_004076629.1| hypothetical protein Mspyr1_21400 [Mycobacterium sp. Spyr1]
 gi|145215776|gb|ABP45180.1| protein of unknown function DUF558 [Mycobacterium gilvum PYR-GCK]
 gi|315262053|gb|ADT98794.1| conserved hypothetical protein TIGR00046 [Mycobacterium sp. Spyr1]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 33/238 (13%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83
           GD+ H+ A V R + G+++ L +G        +  V K  R     Q R         V 
Sbjct: 21  GDEGHHAATVCRTRVGEHLDLSDGAGAVAHCVVEDVAKG-RLSARVQDRILVPVPTPAVT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRY--TQNTHYNMDRVRTYTISAAE 136
            + +  K++R +  I+ + E G  A         + R+         + R R    SAA 
Sbjct: 80  VVQALPKSDRSELAIELATEAGADAFLGWQAARCVARWDGAAKVDKGLRRWRAVARSAAR 139

Query: 137 QCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIP------- 188
           Q     +P +  P + + L+    D     V              LH  A  P       
Sbjct: 140 QSRRPHIPEVRGPVSTQDLVGFTRDAGPATVLV------------LHESATRPLTDADLT 187

Query: 189 --NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             ++ +++GPEGG   EE   L     +  + LGP +LR+ TAA  A+  +  + G W
Sbjct: 188 ARSLTLVVGPEGGVADEELAALTDAGAMA-VRLGPTVLRTSTAAAVALGALGVLTGRW 244


>gi|326381611|ref|ZP_08203305.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326199858|gb|EGD57038.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 250

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 24/218 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRSQTKQ 79
           SG +  +   V R+  G++++L +G+      ++  V    R      +V++ +R++   
Sbjct: 21  SGPEGRHAVTVTRIASGESVILGDGRGTTAECEVVDVAGKDRLTVRAGRVQFHTRAKPLV 80

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTIS 133
           + VQ +    K  R +  +    E G+ AI P      I R++ +     +++ R+   +
Sbjct: 81  TIVQALP---KAERSELAVDLMTEAGVDAIVPWQSSRSIARWSGSKAVKGVEKWRSTAAT 137

Query: 134 AAEQCDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSE--NSLEKLHAIAHIP 188
           AA+Q     +P +      T +  L         IV      GS    S++     +  P
Sbjct: 138 AAKQARRAWIPEVADLAGTTDVRDLAARVTAGGGIVALLHEDGSVPFRSID----FSDAP 193

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
            V  +IGPEGG    E   L +L   T + LGP +LR+
Sbjct: 194 EVVFVIGPEGGLADSEIADLTALGG-TSVVLGPEVLRT 230


>gi|219685331|ref|ZP_03540150.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498
           methyltransferase 1) [Borrelia garinii Far04]
 gi|219673104|gb|EED30124.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498
           methyltransferase 1) [Borrelia garinii Far04]
          Length = 98

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           ++S +KL  I  + N  I++GPE G+  +EK+ +    F +  S+   ILR++TA + A
Sbjct: 30  KDSKKKLIDIEQVNNATIIVGPERGFTEKEKQLIMQYNF-SSCSISSNILRTETAIITA 87


>gi|302545472|ref|ZP_07297814.1| RsmE family RNA methyltransferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302463090|gb|EFL26183.1| RsmE family RNA methyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 289

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 20/231 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-RSQTKQSDVQY 84
           G +  +   V R++ G+ ++L +G        ++ V    R  VE    R +   S    
Sbjct: 66  GPEGRHAVSVKRLRAGEAVILTDGAGTGVSGTVAAVEGKDRLLVEVDGVRHEAAPSPRIT 125

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAEQ 137
           +   + K +R +  ++   E G+ AI P      IT++  +     + + R+    A +Q
Sbjct: 126 VVQALPKGDRGEVAVETMTETGVDAIVPWTAARCITQWKGERGQKALGKWRSTAREAGKQ 185

Query: 138 CDILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN---VAIL 193
              L  P +    TT E      D +   V  +E  GS+       A A +P+   + ++
Sbjct: 186 SRRLIFPEVADAMTTKEVARLLADADLAAVLHEE--GSDP-----LATAQLPHEGHIVLV 238

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG   EE     +     P  LGP +LR+ TA  AA AL+    G W
Sbjct: 239 VGPEGGVSPEELAAFAAAGG-RPYRLGPSVLRTSTAGTAAAALLLGRTGRW 288


>gi|255323732|ref|ZP_05364860.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           tuberculostearicum SK141]
 gi|255299222|gb|EET78511.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           tuberculostearicum SK141]
          Length = 252

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 29/238 (12%)

Query: 10  LFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVGK-S 64
           +F+   L     G+A   SG +  +   V RM EG+ + L +G      L+  +  GK S
Sbjct: 5   VFIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDS 64

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +   V+    +      V  + +  K+ R +  +  + + G   I      R V     +
Sbjct: 65  LEGTVDSIDTAPEPTPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGK 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + + +    SAA+Q     +P +  P T   L+       Q +       S N+ 
Sbjct: 125 KAPKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLV-------QELTGRRDGASSNAP 177

Query: 179 -------EKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                  E   +I  +P   +V +L+GPEGG    E + L      TP+ LGP +LR+
Sbjct: 178 TVLVLHEEATASIKDVPLTEDVVLLVGPEGGIGDAELDRLKEA-GATPIKLGPEVLRT 234


>gi|227874773|ref|ZP_03992926.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC
           35243]
 gi|227844548|gb|EEJ54704.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC
           35243]
          Length = 337

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +A+++GPEGG    E E   ++     L LG  +LR  TA   A+A++QA  G W
Sbjct: 283 EIAVVVGPEGGITEGELEGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 337


>gi|256832772|ref|YP_003161499.1| hypothetical protein Jden_1548 [Jonesia denitrificans DSM 20603]
 gi|256686303|gb|ACV09196.1| protein of unknown function DUF558 [Jonesia denitrificans DSM
           20603]
          Length = 257

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 25/238 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84
           G +  +   V R   G+ I + +G        I++V G+ +   V   S     Q  +  
Sbjct: 26  GVEGRHAGVVQRRSVGEAIDIVDGHGTRLSCTITHVSGEHLDLLVTSVSHESCGQYRLTL 85

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-------VITRYTQNTHYNMDRVRTYTISAAEQ 137
           + +  K +R +  I+ + E+G+  + P       V+ R  +    +   V T   SA +Q
Sbjct: 86  VQALAKGDRDELAIEAATEVGVDRVIPWQADRSIVVWRGARAAKSHARWVATVR-SAMKQ 144

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIPNVAILI 194
                LP +  P T + L+       Q   +V+       E++   L +    P    L 
Sbjct: 145 ARRARLPMVEQPVTSQQLVDVIAETTQTGGVVYVLH----ESATTALTSQPRPPGGEELA 200

Query: 195 --------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                   GPEGG    E E   +      L LGP +LR+ TA   A+AL+ A  G W
Sbjct: 201 PVDVVVVVGPEGGISDSELEKFTAAGAQAVL-LGPHVLRTSTAGPVALALLSASTGRW 257


>gi|25028744|ref|NP_738798.1| hypothetical protein CE2188 [Corynebacterium efficiens YS-314]
 gi|259507805|ref|ZP_05750705.1| RsmE family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23494030|dbj|BAC18998.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164598|gb|EEW49152.1| RsmE family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 241

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 41/241 (17%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82
           +G +  +   V R+  G+ ++L +G       +++ V    R  V  +S  +    D  V
Sbjct: 21  TGPEGRHAVTVKRITPGERVMLIDGHGTARTCQVTAVSGRDRMDVVVESVEEIPPPDPRV 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
             + +  K+ R +  +    + G   I     +  I ++      ++ + +    +AA+Q
Sbjct: 81  TIVQAIPKSERSELTVDLLTQAGADRIVAWQSQRTIAKWAGKEAKSLTKWQAAAEAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK------LHAIAHIP--- 188
               T+P                   ++V   +T G +  +E+      LH  A  P   
Sbjct: 141 SRRATIP-------------------EVVGVVDTAGVDKLIEEADLAIILHEEASQPFRE 181

Query: 189 -----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                +V ++IGPEGG   EE     +    T + LGP +LR+ +A + A+A +  +   
Sbjct: 182 LNFTGDVVVIIGPEGGVSPEEIHRFTAAGAHT-VKLGPEVLRTASAGMVALAAIGVLSNR 240

Query: 244 W 244
           W
Sbjct: 241 W 241


>gi|119952865|ref|YP_945074.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae
           91E135]
 gi|119861636|gb|AAX17404.1| hypothetical protein BT0062 [Borrelia turicatae 91E135]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSENSLEKLHAIA 185
           Y I  A Q  I  +P +     L  +LKN ++      +I+   E   S+N L  L+   
Sbjct: 128 YLIEGAMQGGITYIPKVNILNNLREVLKNTEYEGSNTTKILLERE---SKNKLVDLNI-- 182

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              N  ++IGPE G+ ++E   +    F    ++   ILR++TA + A A++ +
Sbjct: 183 KTKNTVVIIGPERGFITKEINLIKEYNF-NAYNISSNILRTETATIVASAIITS 235


>gi|220918289|ref|YP_002493593.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956143|gb|ACL66527.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 247

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           P  A+ IGPEGG+   E   L    F  P +LGPR+LR D A
Sbjct: 188 PRAALAIGPEGGWTPYEAAALRDRGF-APFTLGPRVLRVDAA 228


>gi|71029718|ref|XP_764502.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351456|gb|EAN32219.1| hypothetical protein TP04_0865 [Theileria parva]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 13/159 (8%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE----QCDILTLPFIYPP 149
           LD ++Q S  +G+G I  + +   + ++    ++   +I+ +     Q  + TL    P 
Sbjct: 129 LDKLLQYSASIGVGNIDLICSSRVEKSYLASHKLSKESINKSLILGLQQGVCTL---MPE 185

Query: 150 TTLEFLLKNWDHNC-QIVFADETCG---SENSLEKLHAIAHIPN-VAILIGPEGGYHSEE 204
             +   +  ++  C Q  +A +      SE +L  L    H+   + + IGPEGG+   E
Sbjct: 186 VNMYLSMGEYERACKQKDYAMKLIAHPDSEETLGSLKLNTHVKGPILVAIGPEGGWLDHE 245

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                 L FV    L  RILR++ AA A ++ +  +  D
Sbjct: 246 LTYYKKLGFVQ-FKLTDRILRTEVAAAAILSQMSLLLND 283


>gi|208434976|ref|YP_002266642.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27]
 gi|208432905|gb|ACI27776.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27]
          Length = 226

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 37/244 (15%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG        E   K   + 
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            VG  +   +E  +  +T       I S I+   ++ ++    ++G+  +      ++Q 
Sbjct: 63  LVGARL---LEVMASKKT-----HLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQR 114

Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   ++R +   I + EQC    L  +   +  +  LK +     + F  ET  + 
Sbjct: 115 NEKIDSAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPAS 174

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234
              EK           ++IGPEGG+   E+E       +  PL +   +L+S++A V   
Sbjct: 175 MDFEK----------GVIIGPEGGFSEPEREYFKEREIYRIPLDM---VLKSESACVFVA 221

Query: 235 ALVQ 238
           ++ Q
Sbjct: 222 SIAQ 225


>gi|308811582|ref|XP_003083099.1| unnamed protein product [Ostreococcus tauri]
 gi|116054977|emb|CAL57054.1| unnamed protein product [Ostreococcus tauri]
          Length = 317

 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 100/255 (39%), Gaps = 40/255 (15%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-------GEWLSK 57
           S L R +VD  L   T  + S ++  + A  LR++ G  + + +G         G+ L  
Sbjct: 42  STLHRFYVDEELRANTTTRLSREETRHAAKALRLRPGVAVEVCDGVGRLARATLGDVLDG 101

Query: 58  ISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT--- 114
             +V      +V+   RS     DV   F+ +K  R D++++K  E+G   + P++    
Sbjct: 102 -RFVVDVEDVRVDVDGRSSGIDWDVVCAFAGLKGGRGDWLVEKCAELGARRLVPLLASRS 160

Query: 115 --RYTQNTHYNMDRVRTYT------ISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQI 165
             R T+      D  R           AA +  +         TT +E L       C+ 
Sbjct: 161 ERRSTRGEDGEGDARRGRAGRWDRVARAASKQSLRARELAVGETTDVEAL-------CRE 213

Query: 166 VFADETCGSENSLEKLHAIAHIPNVA------------ILIGPEGGYHSEEKETLHSLPF 213
           +  +   G+  +L  L   A + +VA            +++GPEG +  EE   +     
Sbjct: 214 MAREREVGTRVTLLALQGGAPVADVAREVGPRAMRAGRVVVGPEGDFTDEEVRAMIR-AG 272

Query: 214 VTPLSLGPRILRSDT 228
             P+ LG   LR +T
Sbjct: 273 ARPIGLGTLRLRVET 287


>gi|315586970|gb|ADU41351.1| RsmE family RNA methyltransferase [Helicobacter pylori 35A]
          Length = 226

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +   +  + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFSNTKEVLNAYPKASVLDFKGETLPASVDFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+E       +  PL +   +L+S++  V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESVCVFVASVAQ 225


>gi|317177831|dbj|BAJ55620.1| hypothetical protein HPF16_1023 [Helicobacter pylori F16]
          Length = 226

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKI 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEMLNAYPKASVLDFKGETLSASVDFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSGQERGYFKECEIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|148239823|ref|YP_001225210.1| hypothetical protein SynWH7803_1487 [Synechococcus sp. WH 7803]
 gi|147848362|emb|CAK23913.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 9/207 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           +  YL  VLR++ G  + + +G    + ++++  G+ +       +R QT  +    +  
Sbjct: 29  EARYLKRVLRLRPGAEVHVVDGCGQLFGTRLTPEGE-LSLDRGADARLQTLAAPQPRLGL 87

Query: 88  PIKTNR--LDYMIQKSVEMGMGAIRPV-ITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
            +   R  +D +++ + E+G+  ++P+   R         DR       A EQC+ L  P
Sbjct: 88  AVALMRRGMDEVMRMACELGVDHLQPLQAQRSVPQAECRPDRWGVILREAVEQCERLWAP 147

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA---ILIGPEGGYH 201
            + P  + +            + A     +   L  L A AH        I IGPEGG+ 
Sbjct: 148 ELLPVLSSDDWWNGPSGQSLRLIAVTRDQASTDLSTLLA-AHGAGAGCCWIAIGPEGGWT 206

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDT 228
           S+E  +     +   + LG  ILRS T
Sbjct: 207 SDELRSAAEAGWCG-VGLGDTILRSST 232


>gi|301066583|ref|YP_003788606.1| hypothetical protein LCAZH_1524 [Lactobacillus casei str. Zhang]
 gi|300438990|gb|ADK18756.1| conserved hypothetical protein [Lactobacillus casei str. Zhang]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
           V+ +    K ++ ++++QK+ E+G   I     ++       +     + R++    +AA
Sbjct: 76  VEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERVVKKIARLQEIAKNAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194
           EQ     +P +     L  + +  +   ++V  +E+         + A++  P ++ ++ 
Sbjct: 136 EQSHRNQVPDVTMYAKLNQVGQTAE--AKLVAYEESAKQGEHGALISALSPRPASLCVVF 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           GPEGG   EE   L    F+    LGPRILR++TA
Sbjct: 194 GPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETA 227


>gi|116495024|ref|YP_806758.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334]
 gi|191638529|ref|YP_001987695.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           casei BL23]
 gi|227534966|ref|ZP_03965015.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116105174|gb|ABJ70316.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334]
 gi|190712831|emb|CAQ66837.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           casei BL23]
 gi|227187423|gb|EEI67490.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327382565|gb|AEA54041.1| hypothetical protein LC2W_1708 [Lactobacillus casei LC2W]
 gi|327385762|gb|AEA57236.1| hypothetical protein LCBD_1740 [Lactobacillus casei BD-II]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
           V+ +    K ++ ++++QK+ E+G   I     ++       +     + R++    +AA
Sbjct: 76  VEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERVVKKIARLQEIAKNAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194
           EQ     +P +     L  + +  +   ++V  +E+         + A++  P ++ ++ 
Sbjct: 136 EQSHRNQVPDVTMYAKLNQVGQTAE--AKLVAYEESAKQGEHGALISALSPRPASLCVVF 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           GPEGG   EE   L    F+    LGPRILR++TA
Sbjct: 194 GPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETA 227


>gi|116670781|ref|YP_831714.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter sp. FB24]
 gi|116610890|gb|ABK03614.1| protein of unknown function DUF558 [Arthrobacter sp. FB24]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 20/236 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +   V R+  G+++ + +G        ++ V +     VE       ++ D++ +
Sbjct: 26  GAEARHAITVKRIAVGESVDIADGAGKRLTGTVAAVDQG-ELTVECSVLETEERPDLRLV 84

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY----TQNTHYNMDRVRTYTISA 134
              +  K +R +   + + E+G+ A+ P      I R+        H     V T     
Sbjct: 85  LVQALAKGDRDELAAETATELGIDAVIPWQSERSIVRWKGERAAKAHAKWQSVVTAAAKQ 144

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHIPN---- 189
           A +  I  +        L+  +   D    I+  D        LEK H      P     
Sbjct: 145 ARRAWIPEVRSAVDGAGLQSAVAAADLAI-ILHEDAVRPLRAVLEKWHDGEGGTPGSGPR 203

Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +++GPEGG    E   L S   VT L LG  +LRS TA  AA  L   I G W
Sbjct: 204 EILLIVGPEGGISPREVTKLCSAGAVTAL-LGHHVLRSSTAGPAATVLASDILGRW 258


>gi|50842401|ref|YP_055628.1| hypothetical protein PPA0917 [Propionibacterium acnes KPA171202]
 gi|282854139|ref|ZP_06263476.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139]
 gi|50840003|gb|AAT82670.1| conserved protein DUF558 [Propionibacterium acnes KPA171202]
 gi|282583592|gb|EFB88972.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139]
 gi|314923116|gb|EFS86947.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL001PA1]
 gi|314966883|gb|EFT10982.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL082PA2]
 gi|314981227|gb|EFT25321.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL110PA3]
 gi|315091796|gb|EFT63772.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL110PA4]
 gi|315093196|gb|EFT65172.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL060PA1]
 gi|315103299|gb|EFT75275.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL050PA2]
 gi|315105505|gb|EFT77481.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL030PA1]
 gi|327327708|gb|EGE69484.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL103PA1]
          Length = 246

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 36/236 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
           +G + H+   V R++ G+++L+ +G+           G ++R      ++       V+ 
Sbjct: 22  TGAEGHHAGSVRRIRVGESVLVTDGQ-----------GHAVRGPAIEVTKGSVSVETVEI 70

Query: 85  IFSPI------------KTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDR 126
           + +P             K++R +  +    EMG+  I      R ++          + R
Sbjct: 71  LHTPATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVAR 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLHAIA 185
            +     A +Q     +P +    T E + +    N Q  +      SE  + ++L A  
Sbjct: 131 WQAAAREATKQSRRFLVPQVELAQTREVVKRIC--NAQAAYVLHESASEPLVHQELPASG 188

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               V  ++GPEGG  S+E E   +     P+++   +LR+ TA V  +A ++A+ 
Sbjct: 189 ---EVIFIVGPEGGITSQEVEAFVA-AGARPVTVSDGVLRTSTAGVVGLAQLRAMA 240


>gi|331082511|ref|ZP_08331636.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400489|gb|EGG80119.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 95

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           G + + E +  I    +V I IGPEGG+   E            ++LG RILR++TA + 
Sbjct: 25  GMKKTKEIIGKIKPGQSVGIFIGPEGGFEESEVALAKEKADAQVITLGKRILRTETAGLT 84

Query: 233 AMALV 237
            +A++
Sbjct: 85  VLAIL 89


>gi|308183185|ref|YP_003927312.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           PeCan4]
 gi|308065370|gb|ADO07262.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           PeCan4]
          Length = 226

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQTLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +      + +LK +     + F  ET       EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLKAYPKASVLDFKGETLPVSVGFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSEQERGCFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|301794754|emb|CBW37207.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
          Length = 247

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+G   I      ++      +     ++++    + AAEQ     +
Sbjct: 83  KGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKLGKKVEKLEKIALGAAEQSKRNVV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAHIPNVAILI---GPEGG 199
           P I+        L   D   +I+ A E    E     L  A+  +   A L+   GPEGG
Sbjct: 143 PSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAALIKAVTGLEKGAKLLFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               E E   +   V    LGPRILR++TA + A++ +  + 
Sbjct: 203 LSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSALSVLV 243


>gi|210135240|ref|YP_002301679.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori P12]
 gi|210133208|gb|ACJ08199.1| hypothetical protein HPP12_1047 [Helicobacter pylori P12]
          Length = 226

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 35/244 (14%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  F----KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
                K+E  +  +T       I S I+   ++ ++    ++G+  +      ++Q    
Sbjct: 63  LVGGRKLEVMASKKT-----HLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEK 117

Query: 123 ----NMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                ++R +   I + EQC    L    ++P T  + +L  +     + F  ET  +  
Sbjct: 118 IDSTKLERFQKILIHSCEQCGRSALMELEVFPNT--KEVLNAYPKASVLDFKGETLPASV 175

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMA 235
             EK           ++IGPEGG+   E+E       +  PL +   +L+S++A V   +
Sbjct: 176 GFEK----------GVIIGPEGGFSEPERECFKEREIYRIPLDM---VLKSESACVFMAS 222

Query: 236 LVQA 239
           + Q 
Sbjct: 223 IAQV 226


>gi|257459141|ref|ZP_05624260.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268]
 gi|257443526|gb|EEV18650.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 19/212 (8%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
           DQ+ +L  V R + G+ I + N +DG  +L +I  +  K     + ++S   T   D   
Sbjct: 19  DQFLHL-KVRRARAGERIDVRNLEDGASYLYEIVEISRKGAALNLVFKSSVFTPSHDFCV 77

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILTL 143
            ++ +++  ++  +    EMG+G +  V    +Q N   +  R+    I++++QC   ++
Sbjct: 78  AWAVVESAVIEKSLPALNEMGVGRLVLVYADLSQKNVRLDPQRMERILINSSQQCGRNSI 137

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
             I   +  + L + +++   I F     G    +     IA        +GPEGG+   
Sbjct: 138 MQIEVLSGSDELAQRYENVSLIDFG----GKNIDIFGGDEIA-------FVGPEGGFSPR 186

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           E+E   +   +      P ILRS+TA +A  A
Sbjct: 187 EREKFKNAYALNS----PYILRSNTALIATCA 214


>gi|320533957|ref|ZP_08034521.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133834|gb|EFW26218.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 270

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-----IRFKVEYQSRSQTKQ 79
           +G +  +   V R++  + + L +G     L +++  G       +  ++  +       
Sbjct: 31  TGPEARHAVTVKRLRAQERVDLVDGAGLRLLCEVTGAGVGGAKDCLAVRILERVEEPAPL 90

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133
             +  + +  K  R +  ++ + E+G G + P      V             R +   + 
Sbjct: 91  LRLTLVQALAKGGRDEQAVETATEVGAGLVLPWQSERCVSVWQGVKQAKGRQRWQATALQ 150

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGS-ENSLE--KLHAI 184
           AA+Q     +P +        L  +W      D    +V  +E       ++E  +L A 
Sbjct: 151 AAKQARRARMPEVEEVRDTRRL-ADWVEQTVRDGGVVLVLHEEASTPISTAMESVRLPAP 209

Query: 185 AHIPNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              P V A+++GPEGG   EE   L +   +T + LGP ++R+ +A   A+A++    G 
Sbjct: 210 GEAPLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVLAHASGL 268

Query: 244 W 244
           W
Sbjct: 269 W 269


>gi|215427748|ref|ZP_03425667.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T92]
 gi|289750971|ref|ZP_06510349.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691558|gb|EFD58987.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 236

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 23/223 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           GD+  + A V R++ G+ ++L +G        +   G+  +R +V  +      +  V  
Sbjct: 22  GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K+ R +  I+ + E G  A       R V           + R R    SAA Q 
Sbjct: 82  VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190
               +P +    +   L+       Q V  +   G+      E + E++   A A   ++
Sbjct: 142 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +++GPEGG   +E   L     V  + LGP +LR+ TAA  A
Sbjct: 195 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTSTAAAVA 236


>gi|220912725|ref|YP_002488034.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter
           chlorophenolicus A6]
 gi|219859603|gb|ACL39945.1| protein of unknown function DUF558 [Arthrobacter chlorophenolicus
           A6]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 26/237 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +   V R+  G+ + + +G  G  +S         R  V   +  +  +  V+ +
Sbjct: 26  GPEARHAVAVKRLAAGEAVDIVDGA-GTRMSGTVAEAAGTRLTVRCGTLVEEARPRVRLV 84

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNM-DRVRTYTISAAEQ 137
              +  K +R +  I+ S E+G+ A+ P      I R+  +       + ++   +AA+Q
Sbjct: 85  LVQALAKGDRDELAIETSTELGIDAVIPWQSERSIVRWKGDRAAKAHGKWQSVVGAAAKQ 144

Query: 138 CDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI---------AHI 187
                +P +     T          +  I+        E+++  L A+            
Sbjct: 145 ARRAWIPEVRSAVDTAALAAAVETADLAIIL------HEDAVRPLRAVLEGWEGASGTGT 198

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             V +++GPEGG    E   L     VT L LG  +LRS TA  AA+ L   I G W
Sbjct: 199 REVLLIVGPEGGISPREVTRLCDRGAVTAL-LGHHVLRSSTAGPAAVVLSSDILGRW 254


>gi|269794664|ref|YP_003314119.1| hypothetical protein Sked_13450 [Sanguibacter keddieii DSM 10542]
 gi|269096849|gb|ACZ21285.1| conserved hypothetical protein TIGR00046 [Sanguibacter keddieii DSM
           10542]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 24/237 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84
           G +  +   V R   G+ I + +G       +++ V    +  +V    +  T    V  
Sbjct: 26  GLEGRHAGVVQRRGVGERIDVVDGAGLRLTCRVTAVQAAEVTLEVVESVQESTDGVSVVL 85

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-------VITRYTQNTHYNMDRVRTYTISAAEQ 137
           + +  K +R +  I+ + E G+ A+ P       V+ R  +        V T   +A +Q
Sbjct: 86  VQALAKGDRDELAIEAATEAGVDAVLPWQAERSVVVWRGDRAAKSRARWVATVR-AATKQ 144

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP--------- 188
               +LP +      + L                   E +L     IA +P         
Sbjct: 145 ARRASLPGVGEVVDAKGLAARTAQVVASGGVVVVLHEEATLP----IAQVPLPARTGDAV 200

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             V +++GPEGG  S+ + TL +    T   LGP +LR+ TA   A+AL+    G W
Sbjct: 201 AEVLVVVGPEGGI-SDRECTLLTEAGATLARLGPHVLRTSTAGPIAVALLSERLGRW 256


>gi|154149486|ref|YP_001406011.1| hypothetical protein CHAB381_0412 [Campylobacter hominis ATCC
           BAA-381]
 gi|153805495|gb|ABS52502.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 219

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTK 78
           Q K + +Q+ +L    R+K G+ I + N KDG  ++ +I  +  K    ++ +++    K
Sbjct: 13  QLKITNEQFSHL-KARRLKAGERIDVRNLKDGFNYIYEIMEISRKEALCELIFKNSVIEK 71

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137
             D    ++ ++   ++  +    E+G+G +  V + ++Q N   ++ R+    I++++Q
Sbjct: 72  TPDFTVAWAVVENAVIEKTLPSLNEIGIGKVILVYSDFSQKNIKPDLKRMERILINSSQQ 131

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C           + LE  + N        F D+    +   + L    +  +    +GPE
Sbjct: 132 CG--------RNSILEIEILNSSDELSKKFQDKISLIDFGGKSLEIFGN--DEIAFVGPE 181

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GG+   E++   +   +      P ILRS+TA ++  A
Sbjct: 182 GGFSERERKLFKNSYAIN----SPYILRSNTAILSVCA 215


>gi|188527861|ref|YP_001910548.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Shi470]
 gi|188144101|gb|ACD48518.1| hypothetical protein HPSH_05545 [Helicobacter pylori Shi470]
          Length = 226

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 27/239 (11%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGVQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            ++R +   I + EQC    L    ++P T  + +L  +     + F  ET  +    EK
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFPNT--KEVLNAYPKASVLDFKGETLPASVGFEK 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                      ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 ----------GVIIGPEGGFSGQERGCFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|224012771|ref|XP_002295038.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969477|gb|EED87818.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 309

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           ++ H P   + +GPE G+  EE             +LG  ILR DTA +A + +V A
Sbjct: 229 SVDHTPKAIVAVGPERGWTDEEANIFVDQCGFETATLGSSILRVDTAVIAGLGVVSA 285


>gi|329946944|ref|ZP_08294356.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526755|gb|EGF53768.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 270

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 23/241 (9%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR---FKVEYQSRSQTKQSD 81
           +G +  +   V R++  + + L +G     L +++  G         V    R +  +  
Sbjct: 31  TGPEARHAVTVKRLRAEERVDLVDGVGLRLLCEVTGAGVGGAKDCLAVRVLERVEEPEPS 90

Query: 82  VQYIF--SPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTIS 133
           ++     +  K  R +  ++ + E+GMG + P      V             R +   + 
Sbjct: 91  LRLTLVQALAKGGRDEQAVETATEVGMGLVLPWQAERCVSIWQAAKQAKGRQRWQATALQ 150

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGS-ENSLE--KLHAI 184
           AA+Q     +P +        L+ +W           +V  +E      N++E  +L A 
Sbjct: 151 AAKQARRARVPEVDEARDTRRLV-DWVGQTVRGGGVVLVLHEEAMTPISNAMESVRLPAS 209

Query: 185 AHIPNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                V A+++GPEGG   EE   L +   +T + LGP ++R+ +A   A+A++    G 
Sbjct: 210 GEASLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVLAHASGL 268

Query: 244 W 244
           W
Sbjct: 269 W 269


>gi|33865512|ref|NP_897071.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH
           8102]
 gi|33632681|emb|CAE07493.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L A   +P V ++IGPEGG+   E E   ++    P+ LG R+L  DTA  AA+AL
Sbjct: 181 LSATPAVPAV-VMIGPEGGFVPFELELAQAV-IAQPVHLGTRVLSVDTALTAALAL 234


>gi|297794975|ref|XP_002865372.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311207|gb|EFH41631.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 139

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 13/116 (11%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-MDRVRTYTISAAEQCDILTLPFIY 147
           +K  R D++I+K  E+G  ++ P++T  +     N +DR+   + + A QC  L    + 
Sbjct: 7   LKGGRADWLIEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAVATQCQRLHQIVLN 66

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENS-----LEKLHAIAHIPNVAILIGPEG 198
           PP     LL   DH    +F  + C    +     L  +++ A   +  +++G EG
Sbjct: 67  PPIKFVTLL---DH----IFKSKLCLVATAEATPLLNAVNSSAKESSGLLIVGSEG 115


>gi|207091939|ref|ZP_03239726.1| 16S rRNA m3U1498 methyltransferase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 226

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V+ Q            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VDAQPLEVIASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +   +  + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEAFSNTKEVLNAYPKASVLDFKGETLPTSVGFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+   E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSEPERGYFKEQKIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|152991814|ref|YP_001357535.1| 16S ribosomal RNA methyltransferase RsmE [Sulfurovum sp. NBC37-1]
 gi|151423675|dbj|BAF71178.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 24/221 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
           GD + YL  V R K  D I L N  D +     I+++ K S    +E  +  + K S V 
Sbjct: 18  GDAHRYLFKVRRQKADDTIYLRNLNDNQLHRYAITHIDKRSATLTLEESTVLEIKASKVL 77

Query: 84  YI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVRTYTISAAEQCDIL 141
           ++ +  I    ++ ++    EMG+  I  +  + +Q +   +  R+    +++++Q    
Sbjct: 78  HVGWCVIDPKNIEKVLPSLNEMGVAKITFIYCKRSQKSFKPDFKRLEKILLNSSQQSGRS 137

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +  +     L   L     +  + F      SEN+   +   A I    I+IG EGG+H
Sbjct: 138 EMMQLEMAEDLRSFLAENPQSKMLNF------SENNF--ISGAADIE--TIVIGCEGGFH 187

Query: 202 SEEKETLHS---LPFVTPLSLGPRILRSDTA--AVAAMALV 237
            +E         L F TPL     +L+S++A  AVA+ AL+
Sbjct: 188 EDEVALFDEEMILGFDTPL-----VLKSESAVCAVASKALL 223


>gi|270263052|ref|ZP_06191322.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13]
 gi|270042740|gb|EFA15834.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13]
          Length = 166

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            + R++   PL    +   S D  +++  VLRM  G  + LF+G +  + ++I  V  KS
Sbjct: 2   RIPRIYHPQPLIDNAEIALSEDAANHVGRVLRMSAGQTLQLFDGSNRVFNAEIVRVDKKS 61

Query: 65  IRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
           ++ ++   + + R       +  + S  +  ++++ IQKS+E+G+  I P+ +
Sbjct: 62  VQVQLGAGQLEDRESPLNLHLGQVIS--RGEKMEFTIQKSIELGVNVITPLFS 112


>gi|222152424|ref|YP_002561599.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus uberis
           0140J]
 gi|222113235|emb|CAR40735.1| conserved hypothetical protein [Streptococcus uberis 0140J]
          Length = 247

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 90  KTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++LD + QK+ E+G  AI        V+    +      +++    + AAEQ     +
Sbjct: 83  KADKLDLVTQKATELGAHAIWSFPADWSVVKWDGKKLAKKAEKLEKIALGAAEQSKRNLV 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLEK-LHAIAHIPNVAILIGPEGG 199
           P +         L    H  +I  A E     G + +L K L ++     +  + GPEGG
Sbjct: 143 PEVVLFERKVDFLAELSHFDKIFIAYEESAKDGEKAALAKALSSLKKGDKILFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              +E         +  + LGPRI+R++TA + A++ V
Sbjct: 203 ISPKEIALFEGAGAIK-VGLGPRIMRTETAPLYALSAV 239


>gi|219112567|ref|XP_002178035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410920|gb|EEC50849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 333

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHS-EEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           GS   ++++        + + +GPEGG+   +E +      F   +++G R+LRSD A V
Sbjct: 260 GSLKKMKQVEFPVKSSRLVVAVGPEGGWEEPDELDRFRDCGFQQ-ITMGARVLRSDCAVV 318

Query: 232 AAMALVQAICGD 243
           + ++L   IC D
Sbjct: 319 SLLSLAHDICAD 330


>gi|217032602|ref|ZP_03438091.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128]
 gi|298735918|ref|YP_003728443.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           pylori B8]
 gi|216945738|gb|EEC24363.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128]
 gi|298355107|emb|CBI65979.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           pylori B8]
          Length = 226

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 25/238 (10%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KD    +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSLLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  +            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGGRPLEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            ++R +   I++ EQC    L  +   P T E +L  +     + F  ET  +    EK 
Sbjct: 122 KLERFQKILINSCEQCGRSVLMELEAFPNTKE-MLNAYPKASVLDFKGETLPASADFEK- 179

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                     ++IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q
Sbjct: 180 ---------GVIIGPEGGFSEQEREQFKEREIYRIPLDM---VLKSESACVFVASIAQ 225


>gi|322378683|ref|ZP_08053116.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1]
 gi|321148900|gb|EFX43367.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----NMDRVRTYTISAAEQCDI 140
           I++ I +  ++ ++    +MG+G I      ++Q         ++R R   I++ EQC  
Sbjct: 80  IWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEKIDAPKLERFRRILIASCEQCGR 139

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            T   +      +  L+ +       F D+T G   SLE            I IGPEGG+
Sbjct: 140 STCMELEVLENTKMALERYPTAYIFDFHDQTQGL-VSLEN----------GIFIGPEGGF 188

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            S+E++        +P    P IL S+ AA+
Sbjct: 189 CSQERQLFKDREIYSP---SPIILTSEGAAL 216


>gi|324998265|ref|ZP_08119377.1| hypothetical protein PseP1_05833 [Pseudonocardia sp. P1]
          Length = 139

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAILIGPEGG 199
           +  P TT +   +  D +  +V   E+ G+         +A +P      V + +GPEGG
Sbjct: 43  WATPSTTRQLARRVADADVALVL-HESAGT--------GLADVPLPDAGEVLLAVGPEGG 93

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               E   L     V P+ +GP +LR+ TAA  A+  +    G W
Sbjct: 94  VDDHELALLADAGAV-PVRMGPEVLRASTAACVALGALAVRTGRW 137


>gi|317009689|gb|ADU80269.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           India7]
          Length = 226

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             V  Q            I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I++ EQC    L  +   +  + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILINSCEQCGRSALMELEAFSNTKEMLNAYPKASVLDFKGETLPTSVGFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+   E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVASIAQ 225


>gi|224002613|ref|XP_002290978.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972754|gb|EED91085.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana
           CCMP1335]
          Length = 147

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           + +GPEGG+    +  + +      ++LG R+LRSD A V+ +AL   +C 
Sbjct: 92  VAVGPEGGWEEPFELDMFTNKGFKKITLGTRVLRSDVAVVSLLALAHEVCA 142


>gi|154509292|ref|ZP_02044934.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798926|gb|EDN81346.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC
           17982]
          Length = 262

 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +A+++GPEGG  +EE   L        + LG  +LRS TA   A+ L++A  G
Sbjct: 208 RIALIVGPEGGIGAEETAQLVD-AGARAIGLGDNVLRSSTAGAVALTLIRAAAG 260


>gi|255327128|ref|ZP_05368203.1| ribosomal RNA small subunit methyltransferase E [Rothia
           mucilaginosa ATCC 25296]
 gi|255295746|gb|EET75088.1| ribosomal RNA small subunit methyltransferase E [Rothia
           mucilaginosa ATCC 25296]
          Length = 259

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 20/230 (8%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           A V R++ G+ I L +G     L  ++ +       +  + R +     +  + +  K  
Sbjct: 32  ALVKRLELGERIDLGDGTGRRALGTVASINADGVSVLVQELREERSVPSIYLVQALAKDG 91

Query: 93  RLDYMIQKSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           R    I+ + E+G+       A R ++    +       + +    +AA+Q     +P +
Sbjct: 92  RDLLAIETATELGVYGVLPWSADRSIVRWKGERASKAHTKWQNTVTAAAKQSRRALIPEV 151

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGS----ENSLEKLHAIA-------HIPN-VAILI 194
           Y   +   L++  +     V ++++       E + E+L A+A       ++P  + +L+
Sbjct: 152 YDLYSTADLVELIEEVAGEV-SEQSAAVFILHEQATERLSALARKLVEAENLPEEIYLLV 210

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG    E +          L LG  +LRS TA  AAM  +  + G W
Sbjct: 211 GPEGGISDREVQLFTDAGAQLAL-LGDEVLRSSTAGSAAMCTLNVVLGRW 259


>gi|239631385|ref|ZP_04674416.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525850|gb|EEQ64851.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 10/155 (6%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRTYTISAA 135
           V+ +    K ++ ++++QK+ E+G   I     ++       +     + R++    +AA
Sbjct: 76  VEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERVVKKIARLQEIAKNAA 135

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILI 194
           EQ     +P +     L  + +  +   ++V  +E+         + A++  P ++ +  
Sbjct: 136 EQSHRNQVPDVTMYAKLNQVGQTAE--AKLVAYEESAKQGEHGVLISALSPRPASLCVFF 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           GPEGG   EE   L    F+    LGPRILR++TA
Sbjct: 194 GPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETA 227


>gi|237840771|ref|XP_002369683.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|211967347|gb|EEB02543.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
          Length = 232

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V + IGPEGG+  +E E L         SLG R+LR +TA V+ +A
Sbjct: 149 RVLVAIGPEGGWIDQEVEELRETQGFEFFSLGDRVLRCETAVVSVIA 195


>gi|221503309|gb|EEE29007.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 232

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V + IGPEGG+  +E E L         SLG R+LR +TA V+ +A
Sbjct: 149 RVLVAIGPEGGWIDQEVEELRETQGFEFFSLGDRVLRCETAVVSVIA 195


>gi|221482899|gb|EEE21230.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 232

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V + IGPEGG+  +E E L         SLG R+LR +TA V+ +A
Sbjct: 149 RVLVAIGPEGGWIDQEVEELRETQGFEFFSLGDRVLRCETAVVSVIA 195


>gi|84997543|ref|XP_953493.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304489|emb|CAI76868.1| hypothetical protein, conserved [Theileria annulata]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 146 IYPPTTLEFLLKNWDHNC-QIVFADETCG---SENSLEKLHAIAHIPN-VAILIGPEGGY 200
           + P  T+   L +++  C Q  +A +      SE +L  L+   H+   + + IGPEGG+
Sbjct: 123 LMPEVTMFISLGDYERACKQKDYAMKLIAHPDSEQTLGSLNLNTHVKGPILVAIGPEGGW 182

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              E      L FV    L  RILR++ AAVA ++ +  +  D
Sbjct: 183 LDHELAYYKKLGFVQ-FKLTDRILRTEVAAVAILSQMSLLLND 224


>gi|15639268|ref|NP_218717.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025510|ref|YP_001933282.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322550|gb|AAC65264.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018085|gb|ACD70703.1| hypothetical protein TPASS_0276 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059678|gb|ADD72413.1| RNA methyltransferase superfamily [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 294

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 37/246 (15%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS-----RSQTKQ 79
           SG  +HY+  V R + GD   L      ++ + +S +    R  + + +       +T+ 
Sbjct: 34  SGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTRSLILHCTPMPPVDEKTQV 93

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNT-HYNMDRV----RT 129
           + V   + P +    D +++ + E+G   I P+     + R  ++T H  + R+    R 
Sbjct: 94  TLVLLQWMP-RARVFDAIVRHATELGTARIIPIRGERSLIRDEKDTQHARLQRIVREARQ 152

Query: 130 YTISAAE-----------QCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGS 174
            + SA                +L   F YP        E  +    H          C +
Sbjct: 153 QSGSAVNTRVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVGGSFHELLWTGRSTHCTA 212

Query: 175 ENSLEKLHAIAHIPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             +  + +A  + P+V      + +G EGG+   E+ TLH   F  PL     +LR +TA
Sbjct: 213 HRTPTEPNAPHNTPDVRAQAVILAVGAEGGFSDTEERTLHDAHFA-PLHFRTNVLRVETA 271

Query: 230 AVAAMA 235
           A+ A+A
Sbjct: 272 ALYALA 277


>gi|145628643|ref|ZP_01784443.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae
           22.1-21]
 gi|144979113|gb|EDJ88799.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae
           22.1-21]
          Length = 99

 Score = 39.7 bits (91), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +Q   GD
Sbjct: 43  GVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQICFGD 96


>gi|330501467|ref|YP_004378336.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
 gi|328915753|gb|AEB56584.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E E L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWTPYEVELLREAAGLQPVQLGERILRVETAVPALLA 233


>gi|297569051|ref|YP_003690395.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924966|gb|ADH85776.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 264

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + IGPEGG+   E        F TP S GPRILR DTA    +AL +A+
Sbjct: 217 LAIGPEGGWVDFEINCFAKQGF-TPFSWGPRILRVDTAVPVLLALAEAL 264


>gi|300933260|ref|ZP_07148516.1| hypothetical protein CresD4_04275 [Corynebacterium resistens DSM
           45100]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 23/224 (10%)

Query: 33  AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           A V R+K+G+ +++ +G D      +  V +  + +V       T +  V  + +  K+ 
Sbjct: 34  ADVKRLKDGEALVITDGSD----QAVRAVWRGPQVEVTEVLAIATPRPFVTVVQAIPKSE 89

Query: 93  RLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           R +  +   V+ G   I P      I +++        +      SAA+Q   L +P + 
Sbjct: 90  RAELAVDLMVQAGADRIIPWESARTIAKWSGKEEKARAKWENAARSAAKQARRLRIPEVT 149

Query: 148 PP----TTLEFLL---KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            P    + +  LL   K       ++    T G ++         +   V ++IGPEGG 
Sbjct: 150 SPARSVSQIASLLGDAKGLQRQVLVLHESATAGLKSR------DFNCDEVVLVIGPEGGV 203

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             EE   L  L     + LGP +LR+ +AA  A+  + A+   W
Sbjct: 204 SPEEIAQLAELGG-EAVVLGPEVLRTASAAAVALGAIGALSTRW 246


>gi|269956977|ref|YP_003326766.1| hypothetical protein Xcel_2190 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305658|gb|ACZ31208.1| protein of unknown function DUF558 [Xylanimonas cellulosilytica DSM
           15894]
          Length = 256

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 20/235 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKSIRFKVEYQSRSQTKQSDVQ 83
           G +  + A V R + G+ + + +G  G  L    ++  G  +R  VE           + 
Sbjct: 25  GGEGRHAAVVQRKRIGERVDVVDGG-GTRLRCVVVAAEGAQVRLGVEEVVTEPAPDVALT 83

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-------VITRYTQNTHYNMDRVRTYTISAAE 136
            + +  K +R +  ++ +VE G  A+ P       V+ R  +        V T   +A +
Sbjct: 84  LVQALAKGDRDELAVEAAVETGADAVLPWQAERSVVVWRGDRAARSRARWVATVR-AAVK 142

Query: 137 QCDILTLPFIYPP-TTLEFLLKNWD----HNCQIVFADE--TCGSENSLEKLHAIAHIPN 189
           Q     +P +    TT +   +  D        +V  +E  T  +   L    A A+ P 
Sbjct: 143 QARRAWVPDVGDAVTTPQLAARVRDVVAAGGVALVLHEEATTPVAAAPLPTPDA-ANPPE 201

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + +++GPEGG    E   L     +  + LGP +LR+ TA   A+AL+    G W
Sbjct: 202 LLVVVGPEGGIGDAELTRLTDAGALA-VRLGPHVLRTSTAGPVAVALLAQRLGRW 255


>gi|157164135|ref|YP_001466041.1| hypothetical protein CCC13826_1151 [Campylobacter concisus 13826]
 gi|112801233|gb|EAT98577.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 103 EMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161
           E+G+G I  V T+++Q N   +++++      + EQC   +L        L+ L+  + +
Sbjct: 96  ELGVGKIAFVYTKFSQANFKIDLEKLNYINALSCEQCGRTSLMEFEIYKNLDELMNVYKN 155

Query: 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
              I F     G +N  EK        +  ++IGPEGG+  +E     ++  +       
Sbjct: 156 VSAINF-----GGKNLNEKR------DDEILIIGPEGGFSEDETAKFKNIYGLNT----K 200

Query: 222 RILRSDTAAVAAMA 235
            ILRS TA ++  A
Sbjct: 201 NILRSQTAVISVAA 214


>gi|54023394|ref|YP_117636.1| 16S ribosomal RNA methyltransferase RsmE [Nocardia farcinica IFM
           10152]
 gi|54014902|dbj|BAD56272.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 246

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 20/216 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT----KQSD 81
           G +  + A V R + G+ I L    DG  L   S V  + R ++E +   +T       +
Sbjct: 22  GPEGRHAATVRRTRVGEPITL---SDGRGLLAASEVVAAQRDRLELRVLERTVAPRPAPE 78

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTISAAE 136
           V  + +  K++R +  +    E G  AI P      +  +       +++ R+   SAA 
Sbjct: 79  VTVVQALPKSDRSELAVDLMTEAGADAIVPWQAARCVANWEGKAAKGVEKWRSAARSAAR 138

Query: 137 QCDILTLPFIY----PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           Q     +P +         LE L++       +V A    G+    E   + A    V +
Sbjct: 139 QSRRAYIPEVADLHRTRDVLE-LVRGARAEGAVVAALHESGTAKFTE--LSFAGASRVVL 195

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           ++GPEGG    E   L +      L LGP +LR+ T
Sbjct: 196 IVGPEGGLDDGELVALAAAGAQVTL-LGPTVLRTST 230


>gi|24380387|ref|NP_722342.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus mutans
           UA159]
 gi|24378409|gb|AAN59648.1|AE015027_6 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 15/221 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++ +V+R+ E D ++L      + L++++ V +   F++     S   +  VQ + 
Sbjct: 20  DTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHT-FEI-VDELSDNVELPVQVVI 77

Query: 87  SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
           +    K ++L+++ QK+ E+G  A+        V+   ++      D++      AAEQ 
Sbjct: 78  ASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKKLLKKADKLTKIAQGAAEQS 137

Query: 139 DILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILI 194
               +P + +     +FL +    N   V  +E+   G   +L + L  ++    +  + 
Sbjct: 138 KRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESAALARELAQLSADQQILFIF 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GPEGG    E         V  + LGPRI+R++TA + A++
Sbjct: 198 GPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALS 237


>gi|260578252|ref|ZP_05846168.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603554|gb|EEW16815.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 270

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 166 VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           V  D+  GSE         A    +A+++GPEGG   EE      L   TP+ LGP +LR
Sbjct: 201 VNGDDANGSE---------AAATEIALVVGPEGGISPEELAEFEQL-GATPVRLGPEVLR 250

Query: 226 SDTAAVAAMALVQAICGDW 244
           + TAA  A+  + A+   W
Sbjct: 251 TATAAAVALGAIGAVTDRW 269


>gi|162447807|ref|YP_001620939.1| hypothetical protein ACL_0953 [Acholeplasma laidlawii PG-8A]
 gi|161985914|gb|ABX81563.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A]
          Length = 227

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 29/235 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D       + K   D  H++ +V+R K G  ++   G  G +L+ +    K + 
Sbjct: 1   MQRYFLDH------KNKIDKDDVHHILNVMRFKSG-TVVEVCGISGCYLATLEIQHKEVG 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHY 122
           F +  +        +V  +    K +++D + + +      +I  V  + +     N  +
Sbjct: 54  F-LTTEKLDDNPPLNVTIVQGLPKGDKMDTVTKYATLFQAKSIIFVAMKRSIAKLSNVDH 112

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R+      AAE     TLP I     L+ +  N D   Q+V  DE       LE+++
Sbjct: 113 KLSRLNKIAKEAAELSKRSTLPHIQLLENLKDI--NTDGK-QLVLLDE-------LERVY 162

Query: 183 AIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            I          ++ +++GPEGG    E+  L     +T +SLG  IL ++ A +
Sbjct: 163 NIKDFIKDHGNKDLIVIVGPEGGIDETERNALVERGAIT-VSLGQSILPTELAHI 216


>gi|302560714|ref|ZP_07313056.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302478332|gb|EFL41425.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 26/234 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVGKSIRFKVEYQSRSQTKQS--DV 82
           G +  +   V R++ G+ ++L +G  G W   ++       R  V      +  +    +
Sbjct: 23  GPEGRHAVAVKRLRAGEAVVLTDGA-GRWAEGEVDGTEGKDRLIVRLGHVVEEPEEFPRL 81

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT-QNTHYNMDRVRTYTISAAE 136
             + +  K +R +  ++   E+G+  I P      IT++  +    ++ + R     A +
Sbjct: 82  TVVQALPKGDRGEVAVETMTEVGVDVIVPWSASRCITQWKGERGLKSLAKWRATAREAGK 141

Query: 137 QCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NV 190
           Q   +  P +    T   +  LL   D    +         E+ +E L A A +P   +V
Sbjct: 142 QSRRVRFPRVADAATTKQVASLLAEADFAAVL--------HESGVEPL-ATAGLPASGDV 192

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +++GPEGG   EE              LG  +LR+ TA  AA AL+    G W
Sbjct: 193 VLVVGPEGGVSPEELAAFEGA-GARVCRLGRSVLRTSTAGTAAGALLLGRTGRW 245


>gi|153005814|ref|YP_001380139.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029387|gb|ABS27155.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 179 EKLHAIAHIPNVAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + L A+A     A L IGPEGG+   E   L +  F TP SLGPR+LR D A   A+  V
Sbjct: 178 DPLEALAPGAERACLAIGPEGGWTPYEAAALCARGF-TPFSLGPRVLRVDAAVPYAVGQV 236

Query: 238 Q 238
           +
Sbjct: 237 E 237


>gi|297160570|gb|ADI10282.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 24/233 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY-QSRSQTKQSD-VQ 83
           G +  +   V R++ G+ ++L +G        ++ V    R  VE  + R +   S  + 
Sbjct: 24  GPEGRHAVSVRRLRVGEPVVLTDGAGTGAFGAVAAVEGKDRLLVEVAEVRHEAPPSPRIT 83

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAAEQ 137
            + +  K +R +  ++   E G+ AI P      +T++        + + R     A +Q
Sbjct: 84  VVQALPKGDRGELAVETMTETGVDAIVPWAAARCVTQWKGERGLKALGKWRATAREAGKQ 143

Query: 138 CDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVA 191
              L  P +    T   +  LL   D    +         E   E L A A +P   +V 
Sbjct: 144 SRRLLFPEVMDAMTTRQVARLLAESDFAAVL--------HEEGAEPL-ATAPLPAEGSVV 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG   EE           P  LGP +LR+ TA  AA AL+    G W
Sbjct: 195 LVVGPEGGVSPEELAAFAEA-GARPYRLGPTVLRTSTAGTAAAALLLGRTGRW 246


>gi|182412505|ref|YP_001817571.1| hypothetical protein Oter_0682 [Opitutus terrae PB90-1]
 gi|177839719|gb|ACB73971.1| protein of unknown function DUF558 [Opitutus terrae PB90-1]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 188 PNVAILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           P V + IG E G+ + E+  L  H   F     LG R+LR++TA +AA+ LV+A  G
Sbjct: 192 PRVTLAIGAERGWSTPERALLRHHGFTFA---HLGERVLRTETACIAAITLVRAALG 245


>gi|302518999|ref|ZP_07271341.1| involving differentiation [Streptomyces sp. SPB78]
 gi|302427894|gb|EFK99709.1| involving differentiation [Streptomyces sp. SPB78]
          Length = 141

 Score = 39.3 bits (90), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++ +++GPEGG   EE  +  +        LGP +LR+ TA  AA+AL+    G W
Sbjct: 86  DIVLVVGPEGGVAPEEIASFTAA-GAHVCRLGPSVLRTSTAGTAAIALLSGRTGRW 140


>gi|149917598|ref|ZP_01906095.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1]
 gi|149821661|gb|EDM81059.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           A +  + +++GPEGG+   E+E   +L     + LGPRI+R +TAAVA +A
Sbjct: 185 AQVGPLTLVLGPEGGFVEFERERFAALGDAL-VHLGPRIMRVETAAVALLA 234


>gi|19553487|ref|NP_601489.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391130|ref|YP_226532.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           glutamicum ATCC 13032]
 gi|21325060|dbj|BAB99682.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032]
 gi|41326469|emb|CAF20631.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
           13032]
          Length = 241

 Score = 39.3 bits (90), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 15/228 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDV 82
           +G +  +   V R++ G+ I L +G+       ++ +    R    V+           V
Sbjct: 21  AGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDRLNAVVDLVEEIPAPNPQV 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
             + +  K+ R +  I    + G   I        + ++      ++ + +    +AA+Q
Sbjct: 81  TIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAKSLAKWQVAAEAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
               T+P I      E + K  D  +  I+  +E   +   LE         NV ++IGP
Sbjct: 141 SRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE------FSGNVVVIIGP 194

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG    E          T + LGP +LR+ +A + A+A +  +   W
Sbjct: 195 EGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLSDRW 241


>gi|261838413|gb|ACX98179.1| hypothetical protein KHP_0982 [Helicobacter pylori 51]
          Length = 226

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 23/237 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL----SKISYVGKSIR 66
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG       ++I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGAQALEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDST 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ Q
Sbjct: 180 --------GVIIGPEGGFSGQERGYFKEREIYRIPLDM---VLKSESACVFVASVAQ 225


>gi|290581320|ref|YP_003485712.1| hypothetical protein SmuNN2025_1794 [Streptococcus mutans NN2025]
 gi|254998219|dbj|BAH88820.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 247

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 15/221 (6%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           D   ++ +V+R+ E D ++L      + L++++ V +   F++     S   +  VQ + 
Sbjct: 20  DTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHT-FEI-VDELSDNVELPVQVVI 77

Query: 87  SP--IKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
           +    K ++L+++ QK+ E+G  A+        V+   ++      D++      AAEQ 
Sbjct: 78  ASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKKLLKKADKLTKIAQGAAEQS 137

Query: 139 DILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEK-LHAIAHIPNVAILI 194
               +P + +     +FL +    N   V  +E+   G   +L + L  ++    +  + 
Sbjct: 138 KRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESAALARELAQLSAGQQILFIF 197

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           GPEGG    E         V  + LGPRI+R++TA + A++
Sbjct: 198 GPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALS 237


>gi|51598323|ref|YP_072511.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi]
 gi|51572894|gb|AAU06919.1| hypothetical protein BG0061 [Borrelia garinii PBi]
          Length = 238

 Score = 39.3 bits (90), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 29/153 (18%)

Query: 100 KSVEMGMGAIRPVITR--------------------YTQNTHYNMDRVRT-----YTISA 134
           K + + +G IRP++ R                     TQ ++ N    +      + I+ 
Sbjct: 73  KKLNVLIGMIRPLVARRIIKELASIGIYEIIFFNTELTQKSYLNSKIFKNNDYEKHLIAG 132

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           A Q     LP I     L+  LK  +   Q  F  +    ++S +KL  I  I N  I++
Sbjct: 133 AMQGGTTYLPKIKIMKNLKESLKYIE---QENFEIKILLEKDSKKKLIDIEQINNATIIV 189

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           GPE G+  +EK+ +    F +P S+   ILR++
Sbjct: 190 GPERGFTEKEKQLITQYNF-SPCSISSNILRTE 221


>gi|307700645|ref|ZP_07637673.1| RNA methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614175|gb|EFN93416.1| RNA methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 342

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +A+++GPEGG    E     ++     L LG  +LR  TA   A+A++QA  G W
Sbjct: 288 EIAVVVGPEGGITEGELAGFRAMGAEIVL-LGSSVLRCSTAGPVALAIIQATLGSW 342


>gi|160901594|ref|YP_001567175.1| hypothetical protein Pmob_0103 [Petrotoga mobilis SJ95]
 gi|160359238|gb|ABX30852.1| protein of unknown function DUF558 [Petrotoga mobilis SJ95]
          Length = 232

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 173 GSENSLEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           G+ ++L K L  +     + +++GPE G+   EK+   +  F T ++LG  I R +T+A+
Sbjct: 159 GTNDNLGKVLKELKGAQKINLVVGPEYGFSKREKDFFSTNEFKT-VNLGKSIFRFETSAI 217

Query: 232 AAMALVQ 238
            AM+++ 
Sbjct: 218 YAMSIIN 224


>gi|262373735|ref|ZP_06067013.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311488|gb|EEY92574.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 236

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           Q  +L   L++K GD  L    +DG+ +L+++  +          Q+ S   +  V  I 
Sbjct: 24  QIKHLNQHLQLKAGDT-LKVGVRDGQRYLTEVQSITAQQIMLRPIQTESVPNKVPVHLIL 82

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTL 143
           +  +   L  MI  +V +G+  I  + +     +++    + ++  Y     EQ     +
Sbjct: 83  ALPRPKVLRRMIMDAVTLGVERISLIHSYRVDKSYWQSPFLQQLDDYVTLGLEQAGDTIV 142

Query: 144 PFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           P I     + P   + L            A     +E S+   HAIAH  N  +++GPEG
Sbjct: 143 PEIQLYKRFKPFVEDVLPTLISEQRPAYVAHPY--AEQSMP--HAIAHGCN--LIVGPEG 196

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           G+   E E L        +SLG RILR++TA 
Sbjct: 197 GFIPYEIELLKK-NGCQAMSLGNRILRTETAV 227


>gi|304310394|ref|YP_003809992.1| hypothetical protein HDN1F_07500 [gamma proteobacterium HdN1]
 gi|301796127|emb|CBL44333.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 243

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           IGPEGG+   E E L +  F + LSLGPRILR +TA
Sbjct: 199 IGPEGGFIPYEIEKLQAAGFRS-LSLGPRILRVETA 233


>gi|254456868|ref|ZP_05070296.1| conserved hypothetical protein TIGR00046 [Campylobacterales
           bacterium GD 1]
 gi|207085660|gb|EDZ62944.1| conserved hypothetical protein TIGR00046 [Campylobacterales
           bacterium GD 1]
          Length = 227

 Score = 38.9 bits (89), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 28/217 (12%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ---SRSQTKQSDV 82
           G+ + YL  + R   GD +   N  D + L K   V    R  VE +   S+ +  QSD 
Sbjct: 22  GELHKYLVKIRRHSVGDELNFRNRDDIKTLHKYRVVQVESR-AVELELISSKEEITQSDK 80

Query: 83  QY--IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAEQCD 139
           Q    +  I    ++ ++    E+G+  I  +    +QN    +  R      ++ +QC 
Sbjct: 81  QLHIAWCVIDAKSIEKVLPSLNEIGVEKISFIYCDRSQNNIKLDFKRFERILEASMQQCG 140

Query: 140 ILT-LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
             + + F    +  EF+ +  D      F D    S+   E+           +L+G EG
Sbjct: 141 RSSYMEFDTYKSIKEFITEFEDVKV-FDFCDNILDSDADFER-----------VLVGCEG 188

Query: 199 GYHSEEKETL---HSLPFVTPLSLGPRILRSDTAAVA 232
           G+   E+E L    +    TP+     +LRS++AAVA
Sbjct: 189 GFSQVERELLSKKENFRLDTPM-----VLRSESAAVA 220


>gi|325963346|ref|YP_004241252.1| hypothetical protein Asphe3_19630 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469433|gb|ADX73118.1| conserved hypothetical protein TIGR00046 [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 26/237 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +   V R+  G+ + + +G       ++     S   +VE ++    +Q   + +
Sbjct: 11  GQEARHAVTVKRLAPGEPVDIVDGAGTRMRGRVVAASAS-GLEVECETLVFEEQPGTRLV 69

Query: 86  F--SPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNM-DRVRTYTISAAEQ 137
              +  K +R +  I+ + E+G+ A+ P      I R+  +       + ++   +AA+Q
Sbjct: 70  LVQALAKGDRDELAIETATELGIDAVIPWQSERSIVRWKGDRAAKAHAKWQSVVTAAAKQ 129

Query: 138 CDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI--------AHIP 188
                +P +     T             ++        E+++  L A+        A  P
Sbjct: 130 ARRAWVPEVRAAVDTAALAGAVEAAELAVIL------HEDAVRPLRAVLEAWQGADASGP 183

Query: 189 -NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             V +++GPEGG    E   L     VT L LG  +LRS TA  AA+ L   + G W
Sbjct: 184 AEVLLIVGPEGGISPREVTRLCGKGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 239


>gi|95928431|ref|ZP_01311179.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
 gi|95135702|gb|EAT17353.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 125 DRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           +R+R + +   EQC    LP +  YP      L K +  +   V   +  G +  +   H
Sbjct: 125 ERIREFLVEGLEQCCDTVLPQVDCYP------LFKPYAED---VLPGQLVGKQGVVAHPH 175

Query: 183 AIA-HIPNVA----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             A H   V+    + IGPEGG+   E   L     V PL LG RIL+ + A  +A+A
Sbjct: 176 VEAPHTAPVSDRYVLAIGPEGGFIPYEVNLLLDQGMV-PLVLGSRILKVEAAMTSAVA 232


>gi|145296244|ref|YP_001139065.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           glutamicum R]
 gi|140846164|dbj|BAF55163.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score = 38.9 bits (89), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 15/228 (6%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS-IRFKVEYQSRSQTKQSDV 82
           +G +  +   V R++ G+ I L +G+       ++ + GK  +   V+           V
Sbjct: 21  AGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDHLNAVVDLVEEIPAPNPQV 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
             + +  K+ R +  I    + G   I        + ++      ++ + +    +AA+Q
Sbjct: 81  TIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAKSLAKWQVAAEAAAKQ 140

Query: 138 CDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
               T+P I      E + K  D  +  I+  +E   +   LE         NV ++IGP
Sbjct: 141 SRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE------FSGNVVVIIGP 194

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG    E          T + LGP +LR+ +A + A+A +  +   W
Sbjct: 195 EGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLSDRW 241


>gi|15645002|ref|NP_207172.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           26695]
 gi|6226368|sp|O25138|RSME_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|2313478|gb|AAD07443.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 37/244 (15%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG        E   K   + 
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            VG  +   +E  +  +T       I S I+   ++ ++    ++G+  +      ++Q 
Sbjct: 63  LVGARL---LEVMASKKT-----HLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQR 114

Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   ++R +   I + EQC    L  +   +  +  LK +     + F  ET  + 
Sbjct: 115 NEKIDIAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPAS 174

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234
              EK           ++IGPEGG+   E+        +  PL +   +L+S++A V   
Sbjct: 175 ADFEK----------GVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVA 221

Query: 235 ALVQ 238
           ++ Q
Sbjct: 222 SIAQ 225


>gi|255086017|ref|XP_002508975.1| predicted protein [Micromonas sp. RCC299]
 gi|226524253|gb|ACO70233.1| predicted protein [Micromonas sp. RCC299]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
           DV      +K  R D++++K  E+G  ++ P++T  + +   + +       +AA +  +
Sbjct: 30  DVAVACGSLKGGRADWLVEKCSELGASSLVPLLTERSGSVGGSSEGRWERVAAAAMKQSL 89

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENSLEKLHAIAHI--------- 187
                +  P      L      C++V     A         L ++ ++A           
Sbjct: 90  RNHRLVVHPALTTTQL------CEMVRRAPVALLCAAGAPPLREVMSMAESRTGDGVEAG 143

Query: 188 ---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                  +++GPEG +  EE ETL +     P+ LGP  LR +TAAVA ++ V 
Sbjct: 144 YSEGGGVLIVGPEGDFTPEEVETLVAA-GARPVGLGPLRLRVETAAVAIISCVS 196


>gi|293189695|ref|ZP_06608412.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus
           F0309]
 gi|292821433|gb|EFF80375.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus
           F0309]
          Length = 262

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 20/245 (8%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSR 74
           L +       G +  + A V R+  G+ + + +G       ++S   K S+   V    R
Sbjct: 18  LSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEVSGSDKASLSLVVRELVR 77

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVR 128
                 +V  + +  K  R +  ++   E+G+  +      R ++            +  
Sbjct: 78  EDAPSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRAIVQWKGPKAEKGRAKWE 137

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----------CQIVFADETCGSENSL 178
               +AA+Q     +P +        L  +W  +          C     D    +   +
Sbjct: 138 GVARAAAKQSRRAFVPVVEDVKDSREL-ASWVASLIGEAGVAFVCHEEAMDSLGAALARV 196

Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++  A   +P+ +A+++GPEGG  ++E   L        + LG  +LRS TA   A+ L+
Sbjct: 197 QESRADGTLPSRIALIVGPEGGIGADETAQLVD-AGARAIGLGDNVLRSSTAGAVALTLI 255

Query: 238 QAICG 242
           +A  G
Sbjct: 256 RAAAG 260


>gi|322380178|ref|ZP_08054413.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5]
 gi|321147393|gb|EFX42058.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5]
          Length = 222

 Score = 38.5 bits (88), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----NMDRVRTYTISAAEQCDI 140
           I++ I +  ++ ++    +MG+G I      ++Q         ++R R   I++ EQC  
Sbjct: 80  IWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEKIDAPKLERFRRILIASCEQCGR 139

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            T   +      +  L+ +       F D+T G   SLE            I IGPEGG+
Sbjct: 140 STCMELEVLENTKMALERYPTAYIFDFHDQTQGL-VSLEN----------GIFIGPEGGF 188

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            ++E++        +P    P IL S+ AA+
Sbjct: 189 CNQERQLFKDREIYSP---SPIILTSEGAAL 216


>gi|213965759|ref|ZP_03393951.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           amycolatum SK46]
 gi|213951518|gb|EEB62908.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           amycolatum SK46]
          Length = 259

 Score = 38.5 bits (88), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 21/216 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQY 84
           G +  +++ V R+K G  ILL NG D    +++ +V  + +  +V         +  V  
Sbjct: 24  GSEAKHIS-VRRLKAGTEILLANGADKVVRAQLMHVDSREVHVRVIAAEERPRPRPHVTV 82

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYNMDRVRTYTIS--AAEQ 137
           + +  K++R +  +    E G+  I P      + R+         R +  + +  AA+Q
Sbjct: 83  VQALPKSDRAELAVDLMTEAGVDEIIPWAAVNCVARWQGTAKVTKARAKWQSAAREAAKQ 142

Query: 138 CDILTLPFI---YPPTTLEFLLKNWDHN---CQIVFADETCGSENSLEKLHA-IAHIPNV 190
                +P +   +    +E L++          ++  +ET        KL A  A+   V
Sbjct: 143 ARRAWIPPVADLHSSADIEQLIRETTSAGGVAAVLHEEETA----PFVKLAAQAANADKV 198

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             ++GPEGG    E E   +    + + LGP +LRS
Sbjct: 199 LFIVGPEGGVSPGELEAFRAA-GASSVVLGPTVLRS 233


>gi|320538483|ref|ZP_08038346.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
 gi|320144654|gb|EFW36407.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
          Length = 249

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           IG E G+  EE+E  +   F T + +G RILR++TA  AA A + +    W
Sbjct: 197 IGSERGWTEEERELFYEQNF-TAVGMGARILRTETAVCAACAAILSKTTVW 246


>gi|317011277|gb|ADU85024.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           SouthAfrica7]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 31/242 (12%)

Query: 11  FVDFPLCIKTQGKASGDQYHYL--------AHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           FV  PL  +   K  G+ Y +L        A VL ++  ++  L+  +  E   K + + 
Sbjct: 3   FVYHPLAKEPTLKIEGESYTHLYRSRRIKIASVLDLRNLNDNFLYTYEHVEITKKHALLR 62

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH- 121
              + ++E  +  +T       I S I+   ++ M+    ++G+  +      ++Q    
Sbjct: 63  LVGQRELEVMTSKKT-----HLILSVIEIKSIEKMLPFLNQLGVNKLSLFYADFSQRNEK 117

Query: 122 ---YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +   I++ EQC    L  +   +  + +LK +     + F  +T  +  + 
Sbjct: 118 IDSAKLERFQKILINSCEQCGRSALMELEVFSNTKEMLKAYPKASVLDFNGKTLQTNFNA 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALV 237
           EK           ++IGPEGG+   E+E       +  PL +   +L+S++A V   ++ 
Sbjct: 178 EK----------GVIIGPEGGFSEPEREQFREREIYRIPLDM---VLKSESACVFVASIA 224

Query: 238 QA 239
           Q 
Sbjct: 225 QV 226


>gi|68535674|ref|YP_250379.1| hypothetical protein jk0602 [Corynebacterium jeikeium K411]
 gi|68263273|emb|CAI36761.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 259

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +A+++GPEGG   EE      L   TP+ LGP +LR+ TAA  A+  + A+   W
Sbjct: 204 EIALVVGPEGGISPEELAEFEQL-GATPVRLGPEVLRTATAAAVALGAIGAVTDRW 258


>gi|156082025|ref|XP_001608505.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801076|gb|EDL42481.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 578

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGK--------ASGDQYHYLAHVLRMKEGDNILLFNGKDGE 53
           K +++L+RLF+  P C+  +G         +SG+  + L    +  EG+N L+ +GK GE
Sbjct: 349 KANANLRRLFLTIPRCVNDEGDVQVGEKVPSSGEGENNLVRSGKWGEGENNLVRSGKRGE 408

Query: 54  WLSKISYVGK-------SIRFKV----EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV 102
             + +   GK       S+R +     E  S    K  D    FS + T  L+ +     
Sbjct: 409 GENNLVRSGKWGEGENNSVRSEKGGEGENNSVRSEKGGDATSHFSTLGTQELNALFPNDG 468

Query: 103 EMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
           ++   +  P + R  +     MD ++ +++S
Sbjct: 469 KVQKRSDYPAMGRKIK--FVCMDFLKLHSVS 497


>gi|332673881|gb|AEE70698.1| RsmE family RNA methyltransferase [Helicobacter pylori 83]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 23/238 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIR 66
           FV  PL  +   K  G+ Y +L     +K    + L N KDG   +    +I+     +R
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRHIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             V  Q+           I S I+   ++ ++    ++G+  +      ++Q        
Sbjct: 63  L-VGTQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSA 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK  
Sbjct: 122 KLERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPTSVDFEK-- 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALVQA 239
                    ++IGPEGG+  +E+E       +  PL +   +L+S++A V   ++ Q 
Sbjct: 180 --------GVIIGPEGGFSGQEREYFKEREIYRIPLDM---VLKSESACVFVASVAQV 226


>gi|254779634|ref|YP_003057740.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori B38]
 gi|254001546|emb|CAX29564.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 226

 Score = 38.1 bits (87), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 39/245 (15%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG        E   K   + 
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            VG  +   +E  +  +T       I S I+   ++ ++    ++G+  +      ++Q 
Sbjct: 63  LVGARL---LEVMASKKT-----HLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQR 114

Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGS 174
                   ++R +   I + EQC    L  +   P T E  LK +     + F  ET  +
Sbjct: 115 NEKIDSAKLERFQKILIHSCEQCGRSALMELEAFPNTKE-ALKAYPKASVLDFKGETLPT 173

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAA 233
               EK           ++IGPEGG+  +E+        +  PL +   +L+S++A V  
Sbjct: 174 SMDFEK----------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFV 220

Query: 234 MALVQ 238
            ++ Q
Sbjct: 221 ASIAQ 225


>gi|299473302|emb|CBN77701.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 450

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 189 NVAILIGPEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            V + +GPEGG+   +E + L S  F   ++LG R+LRSD A  A +AL  A
Sbjct: 376 GVLVAVGPEGGWVEPDELQLLQSFGFQA-VTLGSRVLRSDVAVNALLALAHA 426


>gi|163784445|ref|ZP_02179323.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880282|gb|EDP73908.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 202

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 93/185 (50%), Gaps = 14/185 (7%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-IRFKV-EYQSRSQTKQSDVQ 83
           D+ H+ A V R+K  D  +  N  +G  +L+K+  V K  ++ K+ E  + ++T      
Sbjct: 20  DEAHH-AFVKRIK-PDYFIRVNDLNGHIYLAKVLEVSKKHLKAKILEELTTNETHLKITL 77

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTISAAEQCD 139
           Y+ +P + +++D +I    E+G+    PVI + +    ++    +++ +  T+++ +QC+
Sbjct: 78  YLCAPNQLSKVDELIPFITELGVYRFIPVICKNSAVKEKDILKKIEKWKKITLNSIKQCE 137

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            L    I  P  L+ +  + + N  ++F +     +N   K +    +  V ++IG EGG
Sbjct: 138 RLYPVIIEKPIKLKDIPSDAELN--VLFYER---EKNETLKNYCQLSVKKVNVVIGNEGG 192

Query: 200 YHSEE 204
           +  +E
Sbjct: 193 FTQDE 197


>gi|315282369|ref|ZP_07870795.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii
           FSL S4-120]
 gi|313613989|gb|EFR87707.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii
           FSL S4-120]
          Length = 140

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENSLE 179
            ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E     G +++L 
Sbjct: 11  KIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSALA 70

Query: 180 KL-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            L   I    +V  + GPEGG   +E   L  +       LGPRILR++TA
Sbjct: 71  SLFQTIKPGQSVLCIFGPEGGISEKELVLLQEVN-AKLAGLGPRILRTETA 120


>gi|302830234|ref|XP_002946683.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f.
           nagariensis]
 gi|300267727|gb|EFJ51909.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f.
           nagariensis]
          Length = 187

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 25/173 (14%)

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------------NTHYNMDRVRT 129
           V    + +K  R +++++K  E+G   + P++T  +Q                +  R+  
Sbjct: 4   VAVACTTLKGGRAEWLVEKLTELGAFMMIPLVTERSQVGMTGRGCTAFFPNRISPGRLER 63

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFAD----ETCGSENSLEKLH 182
             I+A +Q     +  + PPT L  +L +    +  C I  A      T G + + E   
Sbjct: 64  VAIAATKQSLRPHVLHLAPPTALADVLPDDGGGESFCLIAVAGAPPLATRGCDAAGE--- 120

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  P   + IGPEG +   E   L       P+ LG   LR++TAA+  +A
Sbjct: 121 --SEGPLRVLFIGPEGDFTPAELAALVQA-GARPVGLGTNRLRTETAAIGLLA 170


>gi|145628642|ref|ZP_01784442.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae
           22.1-21]
 gi|144979112|gb|EDJ88798.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae
           22.1-21]
          Length = 106

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPI--KTNRL 94
           M EG+ + LF+G +  + +KI    K    KVE   R    K+S ++     +  +  R+
Sbjct: 1   MTEGEQLELFDGSNHIYPAKIIESNKK-SVKVEILGRELADKESHLKIHLGQVISRGERM 59

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
           ++ IQKSVE+G+  I P+ +        + +R+     + A+ CD
Sbjct: 60  EFTIQKSVELGVNVITPLWSERC-GVKLDAERMDKKNPTMAKNCD 103


>gi|90415836|ref|ZP_01223769.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium
           HTCC2207]
 gi|90332210|gb|EAS47407.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium
           HTCC2207]
          Length = 236

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 26/225 (11%)

Query: 25  SGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
           SG Q+ +L  V R + GD++ +   +G  G+ + K +   +    ++   S        +
Sbjct: 19  SGRQFDHLLTVQRAQVGDSVRIGVIDGPMGQGIIK-ALGSEQATLEITLDS-PPPPAIPL 76

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRYTQNTHYNMDRVRTYTISAAEQ 137
           + I +  +   L   +Q    MG+  I       V   + Q+     + +    I   EQ
Sbjct: 77  RLILALPRPKMLRRTLQSITAMGVKEIYLVNSSRVEKSFWQSPFLQPEALEEQMILGLEQ 136

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------NV 190
                +P ++       L K +    +    +   GS+  +   H +  +P        V
Sbjct: 137 ARDTQMPNLH-------LRKRFKPFVEDELGNIAKGSQALVA--HPVTEVPCPINCDSAV 187

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + IGPEGG+   E E L S+ F + + LGPRILR + A  A ++
Sbjct: 188 TLAIGPEGGFIPYEIELLSSIGFQS-VHLGPRILRVEVAVPALIS 231


>gi|92113035|ref|YP_572963.1| hypothetical protein Csal_0907 [Chromohalobacter salexigens DSM
           3043]
 gi|91796125|gb|ABE58264.1| protein of unknown function DUF558 [Chromohalobacter salexigens DSM
           3043]
          Length = 236

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + +GPEGG+   E E L +L F T + LG RILR +TA  A +A
Sbjct: 189 VTLAVGPEGGFIPYEVERLQALGF-TGVHLGERILRVETAVTALLA 233


>gi|108757437|ref|YP_630256.1| 16S ribosomal RNA methyltransferase RsmE [Myxococcus xanthus DK
           1622]
 gi|108461317|gb|ABF86502.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK
           1622]
          Length = 254

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            V + IGP+GG+   E + L +  F  P SLGPRILR +TA  A +  V  +  D
Sbjct: 191 RVVLAIGPDGGWVPFEADLLEAHGF-HPFSLGPRILRVETAVPALLGQVALLRED 244


>gi|171778872|ref|ZP_02919934.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282518|gb|EDT47942.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 11/158 (6%)

Query: 90  KTNRLDYMIQKSVEMGMG------AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
           K ++L+++ QK  E+GM       A   V+    +      D++    + AAEQ     +
Sbjct: 83  KGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKKLAKKADKLAKIALGAAEQSKRNVI 142

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHAIAHIPNVAILIGPEGG 199
           P +         +   +   +I  A E    E        +L  +     +  + GPEGG
Sbjct: 143 PQVTLFEKRATFMAELEQFDKIFIAYEDSAKEGETAVLARELSQVKAGEKILFIFGPEGG 202

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              EE         +  + LGPRI+R +TA + A++ V
Sbjct: 203 ISPEEIAAFEEKGGLK-IGLGPRIMRVETAPLYALSSV 239


>gi|149184078|ref|ZP_01862426.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1]
 gi|148848212|gb|EDL62514.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1]
          Length = 114

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 135 AEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEK-LHAIAHIPNV 190
           AEQ     +P +  P +L  L+    N+D+       D   G +++L   L +      +
Sbjct: 1   AEQSHRQHVPNVEFPVSLTELVTLADNFDYKVVAFEEDAKIGEQSNLAGILRSAKPGDRL 60

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + GPEGG   +E   L    FV+   LGPRI+R++TA
Sbjct: 61  LAVFGPEGGLTEKEVNVLKDHGFVS-CGLGPRIMRAETA 98


>gi|260205673|ref|ZP_05773164.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis K85]
 gi|289575065|ref|ZP_06455292.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539496|gb|EFD44074.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 262

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 23/218 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           GD+  + A V R++ G+ ++L +G        +   G+  +R +V  +      +  V  
Sbjct: 22  GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K+ R +  I+ + E G  A       R V           + R R    SAA Q 
Sbjct: 82  VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190
               +P +    +   L+       Q V  +   G+      E + E++   A A   ++
Sbjct: 142 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 195 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTST 231


>gi|115374869|ref|ZP_01462142.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368087|gb|EAU67049.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 265

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +   P V + IGP+GG+   E   L +  F  P +LGPRILR +TA
Sbjct: 203 VGTAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETA 247


>gi|15609509|ref|NP_216888.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis H37Rv]
 gi|15841884|ref|NP_336921.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis CDC1551]
 gi|31793549|ref|NP_856042.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis
           AF2122/97]
 gi|121638251|ref|YP_978475.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662204|ref|YP_001283727.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis H37Ra]
 gi|148823574|ref|YP_001288328.1| hypothetical protein TBFG_12397 [Mycobacterium tuberculosis F11]
 gi|167968750|ref|ZP_02551027.1| hypothetical protein MtubH3_12215 [Mycobacterium tuberculosis
           H37Ra]
 gi|215404298|ref|ZP_03416479.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis
           02_1987]
 gi|215412118|ref|ZP_03420882.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431312|ref|ZP_03429231.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis
           EAS054]
 gi|215446615|ref|ZP_03433367.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T85]
 gi|218754100|ref|ZP_03532896.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|219558363|ref|ZP_03537439.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T17]
 gi|224990745|ref|YP_002645432.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798551|ref|YP_003031552.1| hypothetical protein TBMG_01603 [Mycobacterium tuberculosis KZN
           1435]
 gi|254365148|ref|ZP_04981194.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551419|ref|ZP_05141866.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187375|ref|ZP_05764849.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201496|ref|ZP_05768987.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis T46]
 gi|289443893|ref|ZP_06433637.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448014|ref|ZP_06437758.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553839|ref|ZP_06443049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570515|ref|ZP_06450742.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289746150|ref|ZP_06505528.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289754477|ref|ZP_06513855.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289758494|ref|ZP_06517872.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762538|ref|ZP_06521916.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994523|ref|ZP_06800214.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis 210]
 gi|297634973|ref|ZP_06952753.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis KZN 4207]
 gi|297731966|ref|ZP_06961084.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis KZN R506]
 gi|298525853|ref|ZP_07013262.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776638|ref|ZP_07414975.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis
           SUMu001]
 gi|306780410|ref|ZP_07418747.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis
           SUMu002]
 gi|306785160|ref|ZP_07423482.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789520|ref|ZP_07427842.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis
           SUMu004]
 gi|306793846|ref|ZP_07432148.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis
           SUMu005]
 gi|306798242|ref|ZP_07436544.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis
           SUMu006]
 gi|306804119|ref|ZP_07440787.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis
           SUMu008]
 gi|306972749|ref|ZP_07485410.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis
           SUMu010]
 gi|307080454|ref|ZP_07489624.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis
           SUMu011]
 gi|307085049|ref|ZP_07494162.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659300|ref|ZP_07816180.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis KZN V2475]
 gi|54040530|sp|P67203|RSME_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|54042959|sp|P67202|RSME_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|2078027|emb|CAB08467.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13882151|gb|AAK46735.1| conserved hypothetical protein TIGR00046 [Mycobacterium
           tuberculosis CDC1551]
 gi|31619142|emb|CAD97254.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493899|emb|CAL72374.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150662|gb|EBA42707.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506356|gb|ABQ74165.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148722101|gb|ABR06726.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773858|dbj|BAH26664.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320054|gb|ACT24657.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416812|gb|EFD14052.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420972|gb|EFD18173.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438471|gb|EFD20964.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544269|gb|EFD47917.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686678|gb|EFD54166.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289695064|gb|EFD62493.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289710044|gb|EFD74060.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289714058|gb|EFD78070.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495647|gb|EFI30941.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214955|gb|EFO74354.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326731|gb|EFP15582.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330144|gb|EFP18995.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334005|gb|EFP22856.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337786|gb|EFP26637.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341467|gb|EFP30318.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis
           SUMu006]
 gi|308349264|gb|EFP38115.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis
           SUMu008]
 gi|308357829|gb|EFP46680.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361775|gb|EFP50626.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365397|gb|EFP54248.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719038|gb|EGB28186.1| hypothetical protein TMMG_01663 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903988|gb|EGE50921.1| hypothetical protein TBPG_01877 [Mycobacterium tuberculosis W-148]
 gi|328458319|gb|AEB03742.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 262

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 23/218 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           GD+  + A V R++ G+ ++L +G        +   G+  +R +V  +      +  V  
Sbjct: 22  GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 81

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K+ R +  I+ + E G  A       R V           + R R    SAA Q 
Sbjct: 82  VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 141

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190
               +P +    +   L+       Q V  +   G+      E + E++   A A   ++
Sbjct: 142 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 195 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTST 231


>gi|308375866|ref|ZP_07445358.2| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377996|ref|ZP_07481181.2| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis
           SUMu009]
 gi|308344953|gb|EFP33804.1| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis
           SUMu007]
 gi|308353884|gb|EFP42735.1| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis
           SUMu009]
          Length = 259

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 23/218 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY 84
           GD+  + A V R++ G+ ++L +G        +   G+  +R +V  +      +  V  
Sbjct: 19  GDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTV 78

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K+ R +  I+ + E G  A       R V           + R R    SAA Q 
Sbjct: 79  VQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQS 138

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------ENSLEKLH--AIAHIPNV 190
               +P +    +   L+       Q V  +   G+      E + E++   A A   ++
Sbjct: 139 RRARIPPVDGVLSTPMLV-------QRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSL 191

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 192 MLVVGPEGGIAPDELAALTDAGAVA-VRLGPTVLRTST 228


>gi|310820109|ref|YP_003952467.1| hypothetical protein STAUR_2848 [Stigmatella aurantiaca DW4/3-1]
 gi|309393181|gb|ADO70640.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 248

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +   P V + IGP+GG+   E   L +  F  P +LGPRILR +TA
Sbjct: 186 VGTAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETA 230


>gi|297185081|gb|ADI21190.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
          Length = 44

 Score = 37.4 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 24/26 (92%)

Query: 217 LSLGPRILRSDTAAVAAMALVQAICG 242
           +SLGPRILR++TA++AA++++QA  G
Sbjct: 19  ISLGPRILRTETASLAAISIIQAKWG 44


>gi|146305552|ref|YP_001186017.1| hypothetical protein Pmen_0515 [Pseudomonas mendocina ymp]
 gi|145573753|gb|ABP83285.1| protein of unknown function DUF558 [Pseudomonas mendocina ymp]
          Length = 236

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQAAGLQPVQLGERILRVETAVPALLA 233


>gi|269214516|ref|ZP_06158620.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970]
 gi|269209685|gb|EEZ76140.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970]
          Length = 52

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG+  +E++      F   ++LG RILR++TAA+AA+A +Q + GD+
Sbjct: 1   MVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 51


>gi|284990178|ref|YP_003408732.1| hypothetical protein Gobs_1645 [Geodermatophilus obscurus DSM
           43160]
 gi|284063423|gb|ADB74361.1| protein of unknown function DUF558 [Geodermatophilus obscurus DSM
           43160]
          Length = 255

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 94/216 (43%), Gaps = 23/216 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
           G +  +   VLR+  G+ + + +G+      +++  G + +R +V  +        ++  
Sbjct: 34  GAEGRHAVDVLRLTPGERVRVGDGRGTVAAGEVTAAGPQGLRVQVSARHEVPPPALELVL 93

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN-THYNMDRVRTYTISAAEQC 138
           + +  K  R    ++ + E+G+  I P      +TR+ ++     + + R    +A++Q 
Sbjct: 94  VQALPKGERGPLAVELATELGVDRIVPWAASRCVTRWREDRAAKGVAKWRAAARAASKQS 153

Query: 139 DILTLPFIYPP-TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-----NVAI 192
               +P +    TT +      D +  +V  ++           H +A I      ++A+
Sbjct: 154 RRPRVPEVTDVLTTRQVCGALADVDVALVLHEQA---------RHPLARIELPTSGSIAV 204

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           ++GPEGG    E   L++     P+ LGP +LR+ T
Sbjct: 205 IVGPEGGLSDGEVVALNAA-GARPVRLGPEVLRTST 239


>gi|224437230|ref|ZP_03658207.1| 16S rRNA m3U1498 methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313143692|ref|ZP_07805885.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128723|gb|EFR46340.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 229

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 27/230 (11%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK--SIRFKVEYQSRSQT 77
           Q + S D + Y+    R++    I + N +D + +   I+ + K  ++  K+  Q   ++
Sbjct: 13  QVEISNDDFTYIIKARRLQLDSVIKVRNLQDKKLYTYTIAEIKKKSALLTKISEQDSPKS 72

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-YNMDRVRTYTISAAE 136
             S +  +++ I    ++  +    E+G+  I      ++Q     N+ R++   IS+ +
Sbjct: 73  HFSPLHLLWAIIDPKVIEKTLPFLNELGISRISFFYAEFSQRQFSLNLQRMQKILISSCQ 132

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQ-------IVFADETCGSENSLEKLHAIAHIPN 189
           QC  + L        LE +LK++D  C+         F  E     N     +  A   +
Sbjct: 133 QCGRIDL------MELE-VLKDFDCVCERYTPFYAFDFGGEDIRQHNPF---NEGAENGS 182

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMALVQ 238
           V +++G EGG+   E++      F   ++L    ILRS++A+V   +L +
Sbjct: 183 VRVMVGAEGGFSQRERQR-----FAKIITLNDTLILRSESASVFLASLAK 227


>gi|297194445|ref|ZP_06911843.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718746|gb|EDY62654.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 248

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 20/231 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSIRFKVEYQSRSQTKQSD--V 82
           G +  +   V R++ G++I+L +G   G   + ++  GK  R  VE +   +  Q +  +
Sbjct: 25  GPEGRHAVSVRRLQPGEDIVLTDGGGRGASGTVVTTEGKD-RLTVEVRECRKEPQPEPRI 83

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAE 136
             + +  K +R +  ++   E G+ A+ P      IT++  +    ++ + R     A +
Sbjct: 84  TVVQALPKGDRGELAVETMTETGVDAVVPWSAARCITQWRGERGAKSLAKWRATAREAGK 143

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---NVAIL 193
           Q   L  P +    T + +              E    E +L    A A +P   ++ ++
Sbjct: 144 QSRRLRFPEVSEAATTKQVAALLADADFAAVLHE----EGALP--LATAELPTAGSIVLV 197

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +GPEGG   EE   L +     P  LG  +LR+ TA  AA AL+    G W
Sbjct: 198 VGPEGGVSPEEL-ALFAEAGARPYRLGRSVLRTSTAGTAATALLLGRTGRW 247


>gi|328949325|ref|YP_004366662.1| ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
 gi|328449649|gb|AEB15365.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
          Length = 254

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RVRTYTISAAEQCDILT 142
           PI+  RL   ++    +G+  +    T   + ++   D         + +  + Q     
Sbjct: 98  PIQLKRL---LRDMASLGVQEVHLTGTELGEKSYLKSDLATKGEAEKFLLDGSVQAGSTQ 154

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL-IGPEGGYH 201
           +P ++   TL+  L+  D   +++  D     E S     A+   P  AI  IG E G+ 
Sbjct: 155 IPKLFIHQTLKNCLEQIDLEGKLLALDNI---EPSQSLSCALKEKPQKAIAAIGSERGWT 211

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + E++      F   LS+G RILR++TA+  A++L+
Sbjct: 212 NYERQLFRQNGFEL-LSMGKRILRTETASTVAVSLI 246


>gi|227889814|ref|ZP_04007619.1| glycosyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|120400335|gb|ABM21391.1| glycosyltransferase [Lactobacillus johnsonii]
 gi|227849678|gb|EEJ59764.1| glycosyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 342

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
           + LE+ +KN      +V   +   ++++LEKLH  A   N+ + +G +   +SE+ + ++
Sbjct: 72  SVLEYGIKNTKTKYFLVCDPDDWLTDDALEKLHNFAKNSNLDVTVGDKYNIYSEDNKKVY 131

Query: 210 SLPFVTPLSLGPRILRSDTA 229
              F   L++ PR+   DTA
Sbjct: 132 IPSFKKELNVKPRVA-YDTA 150


>gi|329728385|gb|EGG64822.1| RNA methyltransferase, RsmE domain protein [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 106

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 156 LKNWDHNCQIVFADETCGSE--NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
           + N+D+   I + +E    E  N  + L        V ++ GPEGG    E     +   
Sbjct: 18  IDNYDY-ILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS- 75

Query: 214 VTPLSLGPRILRSDTAAVAAMALV 237
            T + LGPRILR++TA + A++ +
Sbjct: 76  -TVVGLGPRILRAETAPLYALSAI 98


>gi|108563443|ref|YP_627759.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           HPAG1]
 gi|107837216|gb|ABF85085.1| hypothetical protein HPAG1_1018 [Helicobacter pylori HPAG1]
          Length = 226

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 37/245 (15%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG--------EWLSK---IS 59
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG        E   K   + 
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASVLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            VG  +   +E  +  +T       I S I+   ++ ++    ++G+  +      ++Q 
Sbjct: 63  LVGARL---LEVMASKKT-----HLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQR 114

Query: 120 TH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   ++R +   I + EQC    L  +   +  + +LK +     + F  ET    
Sbjct: 115 NEKIDSAKLERFQKILIHSCEQCGRSALMELEVFSNTKEVLKAYPKASVLDFKGETLPIS 174

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAM 234
              EK           ++IGPEGG+   E+        +  PL +   +L+S++A V   
Sbjct: 175 VGFEK----------GVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVA 221

Query: 235 ALVQA 239
           ++ Q 
Sbjct: 222 SIAQV 226


>gi|120404793|ref|YP_954622.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957611|gb|ABM14616.1| protein of unknown function DUF558 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 246

 Score = 36.6 bits (83), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 32/222 (14%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQTKQSDVQ 83
           G++ H+ A V R + G+ + L +G        +  V K  R     Q R      +  V 
Sbjct: 21  GEEGHHAATVCRTRPGEELDLADGAGTVAHCVVEDVAKG-RLTARVQDRHLVAPPRPTVT 79

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAI-----RPVITRY--TQNTHYNMDRVRTYTISAAE 136
            + +  K+ R +  ++ + E G  A         + R+         + R R    SAA 
Sbjct: 80  VVQALPKSERSELAVELATEAGADAFIAWQASRCVARWDGAAKVDKGLRRWRAVARSAAR 139

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-------- 188
           Q     +P +    +   L+++             C    ++  LH  A  P        
Sbjct: 140 QSRRPYIPDVDGVVSTRDLVES-----------TRCAEPGTVLVLHESATRPLADAAAGQ 188

Query: 189 --NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              + +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 189 NDPLTLIVGPEGGVADDELAALTDAGAVA-VRLGPTVLRTST 229


>gi|197123490|ref|YP_002135441.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K]
 gi|196173339|gb|ACG74312.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K]
          Length = 252

 Score = 36.6 bits (83), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           IGPEGG+   E   L    F  P +LGPR+LR D A
Sbjct: 194 IGPEGGWTPYEAAALRDRGF-APFTLGPRVLRVDAA 228


>gi|308184819|ref|YP_003928952.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           SJM180]
 gi|308060739|gb|ADO02635.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           SJM180]
          Length = 226

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 94/241 (39%), Gaps = 31/241 (12%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD--------GEWLSKISYVG 62
           FV  PL  +   K  G+ Y +L    R+K    + L N KD         E   K + + 
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSFLYTYEHAEITKKHALLK 62

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
                 +E  +  +T       I S I+   ++ ++    ++G+  +      ++Q    
Sbjct: 63  LVGARPLEVMANKKT-----HLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEK 117

Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +   I + EQC    L  +   +  + +L  +     + F  ET  +    
Sbjct: 118 IDSTKLERFQKILIHSCEQCGRSVLMELEAFSNTKEMLNAYPKASVLDFKGETLPTSMGF 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDTAAVAAMALV 237
           EK           ++IGPEGG+  +E+        +  PL +   +L+S++A V   ++ 
Sbjct: 178 EK----------GVIIGPEGGFSEQERGYFKEREIYRIPLDM---VLKSESACVFVASIA 224

Query: 238 Q 238
           Q
Sbjct: 225 Q 225


>gi|296130048|ref|YP_003637298.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM
           20109]
 gi|296021863|gb|ADG75099.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM
           20109]
          Length = 252

 Score = 36.2 bits (82), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 27/236 (11%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQY 84
           G +  +   V R   G+ + + +G     ++++  VG + +R  V+        +  +  
Sbjct: 26  GSEGRHAGVVQRRGPGERVDVVDGAGVRLVARVRAVGPEGVRLDVDEVVVEPAPEPRLVL 85

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +  K +R +  I+ + E+G+  + P      ++    +    +  R      +A +Q 
Sbjct: 86  VQALAKGDRDEMAIEAATEVGVDVVVPWQAERSIVVWRGERAQKSRARWIGTVRTATKQA 145

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---------- 188
               +P +      E  L   DH   +        +      LH  A  P          
Sbjct: 146 RRARMPQV------EHAL---DHAALVARVGAVVAAGGVAVVLHETAATPLRDIALPAGG 196

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            V +++GPEGG  S+ +    +        LGP +LR+ TA   A+A++    G W
Sbjct: 197 EVLVVVGPEGGI-SDREVAALTAAGAAVARLGPHVLRTSTAGPVALAVLADRLGRW 251


>gi|281357710|ref|ZP_06244197.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
 gi|281315967|gb|EFA99993.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
          Length = 239

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 190 VAILIGPEGGYHSEEKETL--HSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            A++IGPEGG+   E + L  H    VTP++LG R LR++ A  A +A + A
Sbjct: 188 AALVIGPEGGFTGYEIDLLARHG---VTPVTLGRRTLRTEVAVPALLATLTA 236


>gi|226946565|ref|YP_002801638.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii
           DJ]
 gi|226721492|gb|ACO80663.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 235

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L +   + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDKLQA-AGLAPVQLGERILRVETAVTALLA 232


>gi|219684898|ref|ZP_03539840.1| conserved hypothetical protein [Borrelia garinii PBr]
 gi|219671843|gb|EED28898.1| conserved hypothetical protein [Borrelia garinii PBr]
          Length = 238

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 29/153 (18%)

Query: 100 KSVEMGMGAIRPVITR-------------------------YTQNTHYNMDRVRTYTISA 134
           K + + +G IRP++ R                         Y  +  +  +    + I+ 
Sbjct: 73  KKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKHLIAG 132

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           A Q  +  LP I     L+  LK   +  Q  F  +    ++S +KL  I  + N  I++
Sbjct: 133 AMQGGVTYLPKIKIMKNLKESLK---YIKQENFEIKILLEKDSKKKLIDIEQVNNATIIV 189

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           GPE G+  +EK+ +    F +  S+   ILR++
Sbjct: 190 GPERGFTEKEKQLITQYNF-SSCSISSNILRTE 221


>gi|308446109|ref|XP_003087098.1| hypothetical protein CRE_18396 [Caenorhabditis remanei]
 gi|308262620|gb|EFP06573.1| hypothetical protein CRE_18396 [Caenorhabditis remanei]
          Length = 410

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG+   E + L S      L LG  +LR+ +A  A +A++    G W
Sbjct: 359 LVVGPEGGFSDAELDALES-AGAEILVLGTTVLRTSSAGPAGLAVLNVALGRW 410


>gi|320010893|gb|ADW05743.1| protein of unknown function DUF558 [Streptomyces flavogriseus ATCC
           33331]
          Length = 248

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 24/235 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQS--RSQTKQSD 81
           G +  +   V R+  G++++L +G+ G W   +  +  GK         S          
Sbjct: 21  GPEGRHAVSVRRLNPGEDLVLTDGR-GRWAEGVVRAAEGKDRLLVTGLVSVHEEPAPAPR 79

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHY-NMDRVRTYTISAA 135
           +  + +  K +R +  ++   E G+ AI P      IT++  +    ++ + R+    A 
Sbjct: 80  ITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWKGDRGLKSLAKWRSTAREAG 139

Query: 136 EQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---N 189
           +Q   +  P +    T   +  LL   D    ++  D   GSE       A A +P    
Sbjct: 140 KQSRRVRFPEVANAMTTKQVAALLAGADF-AGVLHEDRDSGSEP-----LATAELPAEGT 193

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + +++GPEGG   +E              LGP +LR+ TA  AA AL+    G W
Sbjct: 194 IVLVVGPEGGVSPQELAAFAEAGAPA-YRLGPSVLRTSTAGTAAAALLMGRTGRW 247


>gi|296272043|ref|YP_003654674.1| hypothetical protein Arnit_0503 [Arcobacter nitrofigilis DSM 7299]
 gi|296096218|gb|ADG92168.1| protein of unknown function DUF558 [Arcobacter nitrofigilis DSM
           7299]
          Length = 222

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS----KISYVGKSIRFKVEYQSRSQTK 78
           K  GD Y YL    R K G  +   N K+    S     IS    ++R  ++ + +    
Sbjct: 15  KVEGDIYKYLFKARREKIGSTVFFRNLKNNFIYSYEIFDISKKDANLRL-IKKEEKIVEA 73

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137
            + +  I++ +    ++  +    E+G+  I      Y+Q N   N+++     I++++Q
Sbjct: 74  NNKLHIIWAIVDPKTIEKQLPYLNEIGVDKITFFYADYSQKNFKLNIEKFEKILINSSQQ 133

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C   ++  +    +L+ +L ++  +    F++     +  ++           +I++G E
Sbjct: 134 CGRSSIIKLEIIASLDEVLTSYKDSFVFNFSNNHINDKKDIK-----------SIIVGCE 182

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPR---ILRSDTAA--VAAMALV 237
           GG+  +E E      F    ++G     ILRS+TA   +AA  +V
Sbjct: 183 GGFSPKELE-----KFTEEKTVGINSNLILRSETAVTTIAAKLIV 222


>gi|111114883|ref|YP_709501.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo]
 gi|216263936|ref|ZP_03435930.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
 gi|110890157|gb|ABH01325.1| hypothetical protein BAPKO_0062 [Borrelia afzelii PKo]
 gi|215979980|gb|EEC20802.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
          Length = 238

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           +NS + L  I    N  I++GPE G+  +EK+ +    F +  S+ P ILR++
Sbjct: 170 KNSKKNLIDIEQTNNATIIVGPERGFTEKEKQLITQYNFAS-YSISPNILRTE 221


>gi|332686843|ref|YP_004456617.1| ribosomal RNA small subunit methyltransferase E [Melissococcus
           plutonius ATCC 35311]
 gi|332370852|dbj|BAK21808.1| ribosomal RNA small subunit methyltransferase E [Melissococcus
           plutonius ATCC 35311]
          Length = 141

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKL- 181
           R+    + AAEQ     LP +    T   L  L +N+D   Q++ A E    +     L 
Sbjct: 12  RLNKIALEAAEQSHRQWLPSVKLLKTGKELVALFQNYD---QVIVAYEESAKQGDTHSLV 68

Query: 182 HAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            +   +       +  + GPEGG+  +E  T+      T   LGPRILR++TA
Sbjct: 69  KSFTSLDKNKKNKILAIFGPEGGFSPKEI-TIFKQAGATLCGLGPRILRAETA 120


>gi|302188582|ref|ZP_07265255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae 642]
          Length = 235

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 187 SVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|222625729|gb|EEE59861.1| hypothetical protein OsJ_12443 [Oryza sativa Japonica Group]
          Length = 501

 Score = 35.8 bits (81), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 15/119 (12%)

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            +DR++   ++A +QC  +    + PP  +  L        Q V +        S E   
Sbjct: 375 RVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADL--------QPVVSQSKLAFVASAESPP 426

Query: 183 AIAHIPNVA------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            ++ +P         +++GPEG +  EE   L +   V P+ LGP  LR +TA ++ ++
Sbjct: 427 LLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAV-PVGLGPCRLRVETATISLLS 484


>gi|149198291|ref|ZP_01875337.1| choline sulfatase [Lentisphaera araneosa HTCC2155]
 gi|149138587|gb|EDM26994.1| choline sulfatase [Lentisphaera araneosa HTCC2155]
          Length = 467

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 92  NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP------- 144
           N+L    +K   MG+G  RP + ++     ++M  + T  +    + DI  +P       
Sbjct: 184 NKLTQNYEKPFFMGVGFYRPHVPQFAPQKWFDMYPLETIQMPKMREADIADIPQYGIDLT 243

Query: 145 ---FIYPPTTLEFLLKNWDHN-------CQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
               + P  T E+ LKN +           + F D   G    L+ L A  H  N  +++
Sbjct: 244 REKHVAP--TYEWALKNNEEKKLVQSYLACVSFVDAQIGK--VLDALDAGPHKENTFVVL 299

Query: 195 GPEGGYHSEEKE 206
             + G+H  EKE
Sbjct: 300 YSDHGFHLGEKE 311


>gi|294629283|ref|ZP_06707843.1| RsmE family RNA methyltransferase [Streptomyces sp. e14]
 gi|292832616|gb|EFF90965.1| RsmE family RNA methyltransferase [Streptomyces sp. e14]
          Length = 293

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 24/235 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQS--RSQTKQSD 81
           G +  +   V R++ G++++L +G  G W   +  +  GK      + +S      +Q  
Sbjct: 66  GPEGRHAVSVKRLRPGEDVVLTDGH-GRWAEGVVKAAEGKDRLVITDLESVVEEPPEQPR 124

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAA 135
           +  + +  K  R +  ++   E+G+ AI P      IT++  +     + + R     A 
Sbjct: 125 ITVVQALPKGERGELAVETMTEVGVDAIVPWQAARCITQWKGDRGLKALGKWRATAREAG 184

Query: 136 EQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP---N 189
           +Q   +  P +    T   +  LL   D    ++ +D   GSE       A A +P    
Sbjct: 185 KQSRRVRFPEVAETATTKQVAALLAKADFAA-VLHSDFEYGSEP-----LATAELPAEGE 238

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + +++GPEGG  S+E              LG  +LR+ TA  AA AL+    G W
Sbjct: 239 IVLVVGPEGGVSSDELAQFREA-GARAYVLGRSVLRTSTAGTAAAALLLGRTGRW 292


>gi|296119869|ref|ZP_06838423.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967023|gb|EFG80294.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 260

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 143 LPFIYPPTTLEFLLKNWDH--NCQI-VFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
           +PF + P T   L+++     +C I V  ++   S   +      A   ++ +LIGPEGG
Sbjct: 157 VPFAHGPLTTAQLVQHLAEREDCLIYVLHEDATDSIKDVPLTTDAATSTDLILLIGPEGG 216

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRS 226
              EE  TL       P+ LGP +LR+
Sbjct: 217 IGPEELATLQKA-GAHPIKLGPEVLRT 242


>gi|158313945|ref|YP_001506453.1| 16S ribosomal RNA methyltransferase RsmE [Frankia sp. EAN1pec]
 gi|158109350|gb|ABW11547.1| protein of unknown function DUF558 [Frankia sp. EAN1pec]
          Length = 242

 Score = 35.8 bits (81), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 85/223 (38%), Gaps = 20/223 (8%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
            G +  + A V R++ G+ + + +G       ++  VG+     V  + RS         
Sbjct: 3   GGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRLV 62

Query: 85  IFSPI-KTNRLDYMIQKSVEMGMGAIRP-----VITRY-TQNTHYNMDRVRTYTISAAEQ 137
           +   + K +R +  ++   E+G+  I P      + R+  +    +  R       AA+Q
Sbjct: 63  VAQALAKGDRGELAVEMLTEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAKQ 122

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-----GSENSLEKLHAIAHIPNVA- 191
                 P + P      L +        V   ET      G   +L+   A+  +P V  
Sbjct: 123 SRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTPLAGLARALQPAFAVEPVPAVEP 182

Query: 192 ------ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                 +++GPEGG    E E L +   V    LGP +LR+ T
Sbjct: 183 EIGEILLVVGPEGGVADGELEALTAAGAVAG-RLGPTVLRTST 224


>gi|330899251|gb|EGH30670.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330938660|gb|EGH42225.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 235

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 187 QVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|297199593|ref|ZP_06916990.1| ribosomal RNA small subunit methyltransferase E [Streptomyces
           sviceus ATCC 29083]
 gi|297147443|gb|EDY57513.2| ribosomal RNA small subunit methyltransferase E [Streptomyces
           sviceus ATCC 29083]
          Length = 292

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 25/235 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           G +  +   V R++ G++++L +G  G W   +  +G   + ++  Q  S  +  DVQ  
Sbjct: 66  GPEGRHAVSVKRLQPGEDVILTDGA-GHWADCV-VLGTEGKDRLIVQLDSVNEAPDVQPR 123

Query: 86  FSPI----KTNRLDYMIQKSVEMGMGAIRP-----VITRYTQNTHYN-MDRVRTYTISAA 135
            + +    K +R +  ++   E+G+ AI P      IT++        + + R     A 
Sbjct: 124 ITVVQALPKGDRGELAVETMTEVGVDAIVPWQAARCITQWKGERGLKALGKWRATAREAG 183

Query: 136 EQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--- 189
           +Q   +  P I    T   +  LL   D    ++ +D   GS        A A +P+   
Sbjct: 184 KQSRRIRFPDIADAATTKQVAALLAKADFAA-VLHSDFERGSAP-----LATAELPDEGE 237

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           + +++GPEGG   +E   L          LG  +LR+ TA  AA AL+    G W
Sbjct: 238 IVLVVGPEGGVAKDEL-ALFEEAGARAYVLGSTVLRTSTAGTAATALLLGRTGRW 291


>gi|330977177|gb|EGH77135.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 235

 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           A    V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 183 AATEQVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|289672001|ref|ZP_06492891.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae FF5]
          Length = 235

 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           A    V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 183 AATEQVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|332670855|ref|YP_004453863.1| hypothetical protein Celf_2349 [Cellulomonas fimi ATCC 484]
 gi|332339893|gb|AEE46476.1| protein of unknown function DUF558 [Cellulomonas fimi ATCC 484]
          Length = 256

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG   +E   L     V  + LGP +LR+ TA   A+A++    G W
Sbjct: 204 VVVGPEGGIGEDELARLVDAGAVA-VRLGPHVLRTSTAGPVALAILAQRLGRW 255


>gi|289624222|ref|ZP_06457176.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647404|ref|ZP_06478747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485111|ref|ZP_07003207.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160363|gb|EFI01388.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330865688|gb|EGH00397.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 235

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 187 QVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|330951280|gb|EGH51540.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit
           7]
          Length = 235

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 187 QVTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|255030926|ref|ZP_05302877.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           LO28]
          Length = 167

 Score = 35.4 bits (80), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 100 KSVEMGM------GAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           KS E+G        A R V+    +     ++R++     AAEQ     +P ++   + +
Sbjct: 9   KSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFK 68

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAIL--IGPEGGYHSEEKETLH 209
            L+    H   ++ A E    E     L ++     P  ++L   GPEGG  SE++  L 
Sbjct: 69  ELMFGHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLCIFGPEGGI-SEKELLLL 127

Query: 210 SLPFVTPLSLGPRILRSDTA 229
                    LGPRILR++TA
Sbjct: 128 EEANAKLAGLGPRILRTETA 147


>gi|32266493|ref|NP_860525.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter hepaticus
           ATCC 51449]
 gi|32262544|gb|AAP77591.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 236

 Score = 35.4 bits (80), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 43/241 (17%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEW----LSKISYVGKSIRFKVEYQSRSQTKQ 79
            + +  +YL  V R++ G+ + L N  D       LS+I     ++R +    + S  K 
Sbjct: 16  VNDENVNYLMKVRRVQLGETLALRNLNDDNLYTYELSEIDKKALTLRLQASQNAPSNIK- 74

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD--RVRTYTISAAEQ 137
           S +  +++ I+   ++  +    E+G+  I      ++Q  H+ +   R+    I + +Q
Sbjct: 75  SHLHLLWAIIEPKIIEKTLPMLNELGVSRISFFYAAFSQG-HFKLSLPRMEKILIQSCQQ 133

Query: 138 C---DILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSE-------NSLEKLHAI 184
           C   D++ L           L KN+   C+     +A +  G +        +  K+   
Sbjct: 134 CGRSDLMELE----------LYKNFHRICEEYTDFYAFDFGGVDICNFTPCQNHSKIGKE 183

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMALVQAICGD 243
            H+  V I++G EGG+ ++E+E      F   ++L    ILRS++A+V     + +I   
Sbjct: 184 KHL--VRIMVGAEGGFSTKERER-----FAKIITLNDTLILRSESASV----FIASIAKM 232

Query: 244 W 244
           W
Sbjct: 233 W 233


>gi|15639026|ref|NP_218472.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025266|ref|YP_001933038.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum SS14]
 gi|8928461|sp|O83075|RSME_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|3322287|gb|AAC65027.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017841|gb|ACD70459.1| hypothetical protein TPASS_0032 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059447|gb|ADD72182.1| ribosomal RNA small subunit methyltransferase E [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 266

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQCDILT 142
           PI+  R+   ++    +G+ +I  V T   + ++ +     M+++ TY I   EQ     
Sbjct: 88  PIQLRRI---LRDVSSLGISSIHLVGTELGERSYLDSGLAHMEKMHTYLIRGLEQAGGTK 144

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADET-----CGSENSLEKLHAIAHIPNVA-ILIGP 196
           LP I    ++        H    +  D T       ++N+L  L + A   +V  I IG 
Sbjct: 145 LPLITVSESVRTFCSQHTH----ILGDSTHQKLILDTKNTLTDLGSAALRGDVLWIAIGS 200

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           E G+   E+    ++ F   + +G R LR++T
Sbjct: 201 ERGWTESERLLFSAMGF-RAVDMGRRTLRTET 231


>gi|330971760|gb|EGH71826.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 235

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|330962012|gb|EGH62272.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 235

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|66043648|ref|YP_233489.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254355|gb|AAY35451.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 235

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEIDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|330964770|gb|EGH65030.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 235

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|28872270|ref|NP_794889.1| hypothetical protein PSPTO_5158 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855524|gb|AAO58584.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 235

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|330877927|gb|EGH12076.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 235

 Score = 35.0 bits (79), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|213969416|ref|ZP_03397553.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
 gi|301386676|ref|ZP_07235094.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063217|ref|ZP_07254758.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato K40]
 gi|302132114|ref|ZP_07258104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925787|gb|EEB59345.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
 gi|331016059|gb|EGH96115.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 235

 Score = 35.0 bits (79), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 188 VTLAIGPEGGWIPYEVDLLRQ-SGLQPVQLGERILRVETAVTALLA 232


>gi|88705941|ref|ZP_01103649.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88699655|gb|EAQ96766.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 244

 Score = 35.0 bits (79), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 22/216 (10%)

Query: 26  GDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83
           G +  +L  VL+++ GDN+ +   NG  G     +  +G+ +        +       + 
Sbjct: 21  GRRLLHLNTVLKVQAGDNVRVGQLNGSIGT--GTVRSIGEDLAVIDVSLDQPAPAPLALT 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQC 138
            + +  +   L  +++   E G+  I  + +      Y Q+       +R   +S  EQ 
Sbjct: 79  VVMALPRPKMLRRILRGMAETGIKEIHLINSFRVEKSYWQSPLLQAPALREALLSGLEQA 138

Query: 139 DILTLPFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
               +P +     + P   + L    D  C     D   G   + E   A    P++ + 
Sbjct: 139 MDTVMPTVHLHRRFRPFAEDSLPALCD-GC-----DALLGDLGAAEDYPASPSSPSL-LA 191

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +GPEGG+   E+E + +     P+SLGPR+LR +TA
Sbjct: 192 LGPEGGFIPFEQELIINA-GARPVSLGPRMLRLETA 226


>gi|237798073|ref|ZP_04586534.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806073|ref|ZP_04592777.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020925|gb|EGI00982.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027186|gb|EGI07241.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 138

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A
Sbjct: 91  VTLAIGPEGGWIPYEIDLLQK-SGLQPVQLGERILRVETAVTALLA 135


Searching..................................................done


Results from round 2




>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040837|gb|ACT57633.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY
Sbjct: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT
Sbjct: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK
Sbjct: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI
Sbjct: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240

Query: 241 CGDWY 245
           CGDWY
Sbjct: 241 CGDWY 245


>gi|254720129|ref|ZP_05181940.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. 83/13]
          Length = 248

 Score =  301 bits (772), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/245 (47%), Positives = 159/245 (64%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTDRIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQA 239

Query: 240 ICGDW 244
           + GDW
Sbjct: 240 VLGDW 244


>gi|319405184|emb|CBI78789.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 247

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 122/245 (49%), Positives = 156/245 (63%), Gaps = 2/245 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+ +
Sbjct: 1   MRANYKLKRLFVRQLLALNEEIVIEGQQASYLVHVLRMKEGTEILLFNGQDGEWLAKLIF 60

Query: 61  VGKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K I   ++ +Q R QT  SD+ Y F+P+K  RLDYMIQK+VEMG+  + PVIT++TQ 
Sbjct: 61  IKKKIVVARLIHQERPQTTHSDLFYCFAPLKHMRLDYMIQKAVEMGVSVLYPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP   P  +LE  L+NWD    + F DE   S N + 
Sbjct: 121 TRINMARIEANIIEASEQCGILSLPKCAPAVSLETFLENWDKTRALFFCDELNESYNPIS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   P + +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DTAAVAA+ LV A
Sbjct: 181 LFKKHGTNP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNA 239

Query: 240 ICGDW 244
             GDW
Sbjct: 240 TMGDW 244


>gi|49473945|ref|YP_031987.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse]
 gi|49239448|emb|CAF25798.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse]
          Length = 244

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/246 (47%), Positives = 153/246 (62%), Gaps = 4/246 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I+  LKRLF+  PL +  + K  G +  YL HVLRM+EG  ILLFNG+DGEWL+K+  
Sbjct: 1   MHINYKLKRLFIRQPLVLNEEIKIEGQKASYLIHVLRMQEGAEILLFNGQDGEWLAKLIT 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  K+ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKRFVVVKLIHQERLQTAPSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  N  R+    + A+EQC IL+LP   P  +L  LL  WD    + F DE     N L 
Sbjct: 121 TRINRTRMEANVVEASEQCGILSLPECVPAVSLVELLACWDETQPLFFCDEAHKLHNPLP 180

Query: 180 KLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            L      +P V  LIGPEGG+  EE+  L    FV P+ LGPRILR+DTAAV A+AL+ 
Sbjct: 181 LLKKHEMTVPGV--LIGPEGGFSKEERSFLKKHSFVIPIPLGPRILRADTAAVVALALLN 238

Query: 239 AICGDW 244
           A  GDW
Sbjct: 239 ATVGDW 244


>gi|297183994|gb|ADI20114.1| uncharacterized protein conserved in bacteria [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 243

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 141/245 (57%), Gaps = 4/245 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I S + RLFVD PL          DQ +YL +V+R+  GD I +FNGKDGEW + + +
Sbjct: 1   MNIRSKI-RLFVDTPLGEGQSILLDRDQANYLFNVMRLNIGDYISVFNGKDGEWQADVLH 59

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K       +YQS  Q    D+  +F+PIK  R D++++K+ EMG+  I PV T YT +
Sbjct: 60  ANKRKGILVAKYQSMQQLNPPDLWLLFAPIKKTRTDFIVEKATEMGVSRIFPVNTDYTNS 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R+++++I AAEQC    +P +   + L  +LK+W  +  ++F DE    E    
Sbjct: 120 DRIKQSRLQSHSIEAAEQCGGTYVPPVDELSKLTSILKDWPKDRCLIFCDENKVGEAV-- 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K    +     AILIGPEGG+   E + L SL FVT +SLGPRILR+DTA VAA+A+ Q 
Sbjct: 178 KTFKSSVCDKWAILIGPEGGFSKNEIKYLKSLEFVTSISLGPRILRADTAVVAALAIWQK 237

Query: 240 ICGDW 244
             GDW
Sbjct: 238 EIGDW 242


>gi|167036024|ref|YP_001671255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1]
 gi|166862512|gb|ABZ00920.1| protein of unknown function DUF558 [Pseudomonas putida GB-1]
          Length = 239

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  ++     Q      V       +  R+D+ IQK+ E+G   I P+++         
Sbjct: 61  VRVSLDQALTGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   TLP I+PP  L   L +   + ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLTEWLSSTQADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A    +A LIGPEGG    E E   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPAGLAFLIGPEGGLSEAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|265985135|ref|ZP_06097870.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306839033|ref|ZP_07471853.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|264663727|gb|EEZ33988.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306405856|gb|EFM62115.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 242

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 156/239 (65%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      D
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR+DTAAVAAM LVQA+ GDW
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMVLVQAVLGDW 238


>gi|315122545|ref|YP_004063034.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495947|gb|ADR52546.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 254

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 170/255 (66%), Positives = 201/255 (78%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK+H  LKRLFV+F L  K QGKAS  QYHYLAHVLRMKE + +L+FNG+DGEW+S ISY
Sbjct: 1   MKMHPPLKRLFVNFSLQPKAQGKASDAQYHYLAHVLRMKEKEKVLIFNGEDGEWISTISY 60

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           + KSI F VE+Q+R+QTK SD+ YIFSPIKTNRLDYMIQKSVEMG+ AIRPVITRYTQNT
Sbjct: 61  IKKSISFNVEHQTRTQTKPSDLHYIFSPIKTNRLDYMIQKSVEMGVSAIRPVITRYTQNT 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           H N++R+RTY ISAAEQC+I++LP I+PP TL+ LL++WD N  IVFADETC  ENS  K
Sbjct: 121 HCNVNRMRTYAISAAEQCNIISLPSIHPPITLDTLLEDWDQNRHIVFADETCIHENS--K 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAA 230
           + AIAHI ++A+LIGPEGG+H +EKE LHSLPFVTP+SLGPRILR               
Sbjct: 179 IQAIAHIVHMAVLIGPEGGFHPKEKEKLHSLPFVTPISLGPRILRADTAAVAAIA----- 233

Query: 231 VAAMALVQAICGDWY 245
                LVQ+ CGDWY
Sbjct: 234 -----LVQSTCGDWY 243


>gi|104783966|ref|YP_610464.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila
           L48]
 gi|95112953|emb|CAK17681.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 239

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +    +    Q HY+  VLRM  GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFIDAPLGLGEH-ELPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  ++     Q + S  V       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVSLDQALPGQAESSLHVHLGQGLSRGERMDWAIQKATELGVNEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   ++P I+PP TL   +K  D + ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSSVPVIHPPVTLAEWIKGSDADLKLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L + A    +A LIGPEGG +  E E   +  F     LGPR+LR++TA V A+++ 
Sbjct: 176 --PLTSHAKPARLAFLIGPEGGLNDAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|144898953|emb|CAM75817.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 245

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 152/239 (63%), Gaps = 2/239 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + RLFV   L   +      DQ HYLA+V+R+K G+++ LFNG+DGEWL ++  V K S+
Sbjct: 1   MIRLFVANDLSADSLIGLDKDQSHYLANVMRVKAGEDVALFNGRDGEWLGRLDKVAKASV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +V+ QSR QT + D+  + +PIK + +D + +K+ E+G+ A+ PV T  T  +  N D
Sbjct: 61  TLQVQSQSRPQTPEPDLWLLAAPIKKDCIDLVAEKATELGISALWPVFTHRTVMSRVNTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+    + AAEQC+ L++P +  PT L   L  WD    +VF DE+ G     + LH++ 
Sbjct: 121 RLAANMVEAAEQCERLSVPEMREPTDLAKALAGWDAARPLVFLDESGGGAPITQALHSLQ 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P +A+L GPEGG+   E+  L  LPF  P+SLGPRILR++TAA+AA+++VQA+ GDW
Sbjct: 181 PGP-LAVLTGPEGGFDDSERAMLARLPFAVPVSLGPRILRAETAAIAALSVVQALLGDW 238


>gi|148550061|ref|YP_001270163.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1]
 gi|148514119|gb|ABQ80979.1| protein of unknown function DUF558 [Pseudomonas putida F1]
          Length = 239

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+  ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKT 60

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  ++     Q      V       +  R+D+ IQK+ E+G   I P+++         
Sbjct: 61  VRVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   TLP I+PP  L   L +   + ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPVIHPPVPLAEWLSSTKADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +      +A +IGPEGG    E E   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHEKPATLAFVIGPEGGLSEAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|26991662|ref|NP_747087.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida
           KT2440]
 gi|24986759|gb|AAN70551.1|AE016697_6 conserved hypothetical protein TIGR00046 [Pseudomonas putida
           KT2440]
 gi|313500961|gb|ADR62327.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 239

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+  ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKT 60

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  ++     Q      V       +  R+D+ IQK+ E+G   I P+++         
Sbjct: 61  VRVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   TLP I+PP TL   L +   + ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +      +A +IGPEGG    E E   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLISHEKPATLAFVIGPEGGLSEAEVEQAKAAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|49082184|gb|AAT50492.1| PA0419 [synthetic construct]
          Length = 241

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R FVD PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFVDQPLSLGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60

Query: 65  IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q   Q      +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   +LP I+PP  LE  L+  D + ++V           
Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L + A    +A L+GPEGG    E E   +  F +   LGPR+LR++TA V A+A+ 
Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|126727781|ref|ZP_01743611.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium
           HTCC2150]
 gi|126702908|gb|EBA02011.1| hypothetical protein RB2150_10474 [Rhodobacterales bacterium
           HTCC2150]
          Length = 246

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 137/242 (56%), Gaps = 4/242 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           L RL+ D PL          DQ HYL  V+R K GD + LFNG+DGEW  K+ +  K   
Sbjct: 4   LSRLYTDHPLAQGHNIPLERDQAHYLFGVMRRKLGDEVELFNGRDGEWRGKVVHANKHRG 63

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +V +Q+R      D+  +F+PIK  R D++++K+ EMG   I PV+T YT +     +
Sbjct: 64  ILEVTHQTRPLQMPPDLWLMFAPIKKARTDFIVEKATEMGAARIVPVMTEYTNSDRVRQE 123

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---LEKLH 182
           +++ + + AAEQC    +P +     L+ +L NW    Q++F DE      +     KL 
Sbjct: 124 KMQIHAVEAAEQCGGTYVPEVAELQKLDRMLDNWPDGRQLLFCDEGLIGRPTGLDQSKLT 183

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           A+      AILIGPEGG+  +E+  L SL FVT  SLGPRILR+DTAAVAA+ L Q   G
Sbjct: 184 AVNKTGPWAILIGPEGGFSEKERNRLASLDFVTTQSLGPRILRADTAAVAALTLWQRELG 243

Query: 243 DW 244
           DW
Sbjct: 244 DW 245


>gi|15595616|ref|NP_249110.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PAO1]
 gi|218889161|ref|YP_002438025.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           LESB58]
 gi|254237347|ref|ZP_04930670.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254243517|ref|ZP_04936839.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9946275|gb|AAG03808.1|AE004479_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126169278|gb|EAZ54789.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196895|gb|EAZ60958.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769384|emb|CAW25144.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 240

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R FVD PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFVDQPLSLGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60

Query: 65  IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q   Q      +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   +LP I+PP  LE  L+  D + ++V           
Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L + A    +A L+GPEGG    E E   +  F +   LGPR+LR++TA V A+A+ 
Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|260431629|ref|ZP_05785600.1| surface protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415457|gb|EEX08716.1| surface protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 241

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 3/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL        + +Q HYL  V+R+  G  + LFNG+DGEWL++++  GK     
Sbjct: 6   RLYVDHPLGAGQSVPLTREQAHYLFGVMRLAVGGQVALFNGRDGEWLAEVAEAGKRGGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+R      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  SCLEQTRPLQLPPDLWLLFAPIKKARTDFIVEKAAEMGAAKIMPVQTAFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ LL NW    Q++F DE      S  +L A    
Sbjct: 126 QAHAVEAAEQCGGTFVPEVCDLQRLDKLLDNWPDGRQLMFCDEAEAG--SALRLAAQDKG 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E++ L  LPF   +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 184 RPWAILIGPEGGFSDAERQRLKDLPFTHVVSLGPRILRADTAAVAAMTLWQQALGDW 240


>gi|149913421|ref|ZP_01901954.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b]
 gi|149812541|gb|EDM72370.1| hypothetical protein RAZWK3B_08971 [Roseobacter sp. AzwK-3b]
          Length = 241

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL        + DQ HYL  V+R   GD +L FNG+DGEWL  +    K     
Sbjct: 7   RLYVEHPLGEGQTVPLNRDQAHYLFAVMRRGAGDALLAFNGRDGEWLVTVQEASKKGGVL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +VE Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 67  RVEKQTAPQRNPPDLWVLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + I AAEQC    +P +     L+ LL++W    Q++F DE      + + L A+   
Sbjct: 127 QAHAIEAAEQCGGTYVPEVADLQKLDQLLQDWPEGRQLMFCDEALAG--AAQNLGAV-GG 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E+  LH+LPF  P+SLGPRILR+DTAAVAAM + Q   GDW
Sbjct: 184 PAWAILIGPEGGFSEAERARLHALPFAHPVSLGPRILRADTAAVAAMTVWQMALGDW 240


>gi|296386918|ref|ZP_06876417.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PAb1]
 gi|313111958|ref|ZP_07797747.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa
           39016]
 gi|310884249|gb|EFQ42843.1| hypothetical protein PA39016_004050033 [Pseudomonas aeruginosa
           39016]
          Length = 240

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 117/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R FVD PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFVDQPLALGQH-DLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60

Query: 65  IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q   Q      +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   +LP I+PP  LE  L+  D + ++V           
Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLRLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L + A    +A L+GPEGG    E E   +  F     LGPR+LR++TA V A+A+ 
Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGF-HAARLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|170719665|ref|YP_001747353.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619]
 gi|169757668|gb|ACA70984.1| protein of unknown function DUF558 [Pseudomonas putida W619]
          Length = 239

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYLGQLLEVGKKT 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  ++     Q +    +       +  R+D+ IQK+ E+G   I P+++         
Sbjct: 61  VRVSLDQAVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC    LP I  P TL   +K  D + ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSILPIIRAPVTLGDWIKGSDADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +      +A LIGPEGG    E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPARLAFLIGPEGGLSEAEVDQAKGAGF-QAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|89091936|ref|ZP_01164891.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92]
 gi|89083671|gb|EAR62888.1| hypothetical protein MED92_07211 [Oceanospirillum sp. MED92]
          Length = 242

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R +   PL  K++ + S +   +++  LRMK GD ++LFNG   E+L+++S V K  
Sbjct: 2   RIPRFYDPQPLSEKSEIQLSDEVVQHVSRALRMKVGDQLILFNGNGVEYLAELSQVEKRK 61

Query: 66  --RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                VE    +      V    S  +  R+DY +QKS EMG+  I P+ +         
Sbjct: 62  ASAHIVETIQSNSETPLTVHIGQSLSRGERMDYAVQKSTEMGVHQITPLFSERCEVKLPE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++  +   ISA EQ   +  P I  P  L+  L   D   ++V    +      
Sbjct: 122 ERQAKRINHWQQIAISACEQSGRVNPPLIAKPENLKSWLAQQDAELKLVLHHHSEM---- 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L  +    +VA+LIGPEGG   +E E      F  PL+LGPR++R++TA VAA+ L+
Sbjct: 178 --PLQEMKPPSSVALLIGPEGGLTEDEVELAQEFGF-KPLTLGPRVMRTETAPVAALTLL 234

Query: 238 QAICGD 243
             + GD
Sbjct: 235 NYLWGD 240


>gi|107099405|ref|ZP_01363323.1| hypothetical protein PaerPA_01000417 [Pseudomonas aeruginosa PACS2]
          Length = 240

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R FVD PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFVDQPLSLGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60

Query: 65  IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q   Q      +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   +LP I+PP  LE  L+    + ++V           
Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRGDDLRLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L + A    +A L+GPEGG    E E   +  F +   LGPR+LR++TA V A+A+ 
Sbjct: 176 --PLASHAPPSRLAFLVGPEGGLSDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|260773596|ref|ZP_05882512.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           metschnikovii CIP 69.14]
 gi|260612735|gb|EEX37938.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           metschnikovii CIP 69.14]
          Length = 243

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D  +++  VLRM+ G ++ LF+G D E+ + IS + K  
Sbjct: 2   RIPRIYHPSPIHQLGTLALSDDAANHIGKVLRMQPGQSVTLFDGSDAEFPAVISEISKK- 60

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           +  V+ Q R +       ++       + +++++ IQKSVE+G+  I P+++        
Sbjct: 61  QLTVDIQQRIEKSIESPLNLHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC    +P I P   LE          ++        S N
Sbjct: 121 PKRFEKKLQQWQKIAIAACEQCGRNIVPVIRPVMELEAWCAEPSQALKLNLHPRASYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +      +  V +LIGPEGG   +E        F   L LGPR+LR++TAA+ A+  
Sbjct: 181 TLPE-----PVNKVRLLIGPEGGLSEQEIAMTEQYHFAETL-LGPRVLRTETAALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|197334623|ref|YP_002155192.1| protein YggJ [Vibrio fischeri MJ11]
 gi|197316113|gb|ACH65560.1| protein YggJ [Vibrio fischeri MJ11]
          Length = 243

 Score =  281 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+     L  + +   S D  +++  V+RMKEG+++LLF+G   E+ + I+   K  
Sbjct: 2   RIPRIHHPELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGAEFPAVITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++ E   RS     ++       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VEVEITERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNVITPLISERCGVKLNK 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +D+ +   I+A EQC   T+P I P  +LE          ++        S N+
Sbjct: 122 ERFEKKLDQWQKIAIAACEQCGRNTIPEIRPIMSLEEWCAEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      + NV +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVTNVRLLIGPEGGLSSDEINMTEQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|59711043|ref|YP_203819.1| hypothetical protein VF_0436 [Vibrio fischeri ES114]
 gi|59479144|gb|AAW84931.1| predicted protein [Vibrio fischeri ES114]
          Length = 243

 Score =  281 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+     L  + +   S D  +++  V+RMKEG+++LLF+G   E+ + I+   K  
Sbjct: 2   RIPRIHHPELLPSQGKVNLSDDAANHVGRVMRMKEGESVLLFDGSGSEFPAVITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++ E   RS     ++       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VEVEITERIERSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNK 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +D+ +   I+A EQC   T+P I P  +LE          ++        S N+
Sbjct: 122 ERFEKKLDQWQKIAIAACEQCGRNTVPEIRPIMSLEEWCAEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      + NV +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVTNVRLLIGPEGGLSSDEISMTEQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|149191952|ref|ZP_01870183.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1]
 gi|148834219|gb|EDL51225.1| hypothetical protein VSAK1_07844 [Vibrio shilonii AK1]
          Length = 243

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   P+        S D   ++  VLRMKEG  +LLF+G   E+ + I+ +GK  
Sbjct: 2   RIPRIYHPEPIHALGTLALSEDAAGHVGRVLRMKEGQEVLLFDGSGHEFPATITQIGKKN 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   + E  S S     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VDVDIQEKVSTSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P  +LE          ++        S N+
Sbjct: 122 KRFEKKLQQWQKIAISACEQCGRNTIPEIRPIMSLEQWCAEPSEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E E      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVTKVRLLIGPEGGLSAQEIEMTEQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|259415138|ref|ZP_05739060.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259349048|gb|EEW60802.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 246

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/247 (37%), Positives = 137/247 (55%), Gaps = 6/247 (2%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ + RL+VD PL          DQ HYL  V+R+  G  + LFNG+DGEW ++++   
Sbjct: 1   MNAKV-RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLAVGARVALFNGRDGEWQAEVAEAS 59

Query: 63  K-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
           K S       QS+      D+  IF+PIK  R D++++K+ EMG   I PV T +T +  
Sbjct: 60  KRSGVLTCVEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATDFTNSER 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-LEK 180
              DR++ + + AAEQC    +P +     L  LL +W  + Q++F DE    +   L+ 
Sbjct: 120 IRQDRLQAHAVEAAEQCGGTYVPEVADLQKLSALLDHWPEDRQLMFCDEAEVGQRLFLDA 179

Query: 181 LHAIAHI---PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + +        + AILIGPEGG+   E++ L ++     +SLGPRILR+DTAAVAAM L 
Sbjct: 180 VQSEKPPTASGSWAILIGPEGGFSDAERKRLQAMQQAHVVSLGPRILRADTAAVAAMTLW 239

Query: 238 QAICGDW 244
           Q   GDW
Sbjct: 240 QRALGDW 246


>gi|77461509|ref|YP_351016.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           Pf0-1]
 gi|77385512|gb|ABA77025.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 239

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL      +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFIDAPLSTGEH-ELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGSLVEVGKKR 60

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +++ Q   Q      +       +  R+D+ IQK+ E+G+  I P+ +         
Sbjct: 61  VVVQIDEQFAGQVESPLKIHLGQGLSRGERMDWAIQKATELGVTEITPIFSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC    +P I+PP  L   LK  +   ++V           
Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A    +A LIGPEGG    E E   +  F     LGPR+LR++TA V A+A+ 
Sbjct: 174 AEPLVSHAKPSTLAFLIGPEGGLSDAEVEQAKAGGF-HAARLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|254463111|ref|ZP_05076527.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
           HTCC2083]
 gi|206679700|gb|EDZ44187.1| conserved hypothetical protein TIGR00046 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 240

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 133/237 (56%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RLFVD PL        S  Q HYL  V+R+  G  + LFNGKDGEW  +I   GK     
Sbjct: 6   RLFVDQPLAEGNCVSVSQAQAHYLFGVMRLAVGGAVSLFNGKDGEWRCEILEAGKRKGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   Q++      D+   F+PIK  R D++++K+ EMG   I PV T +T +     +R+
Sbjct: 66  RCTVQTKPLQMPPDLWLCFAPIKKTRTDFIVEKATEMGASKICPVQTEFTNSERIKQERL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +   + L  +L +W    QI+F DET         L + +  
Sbjct: 126 QAHAVEAAEQCGGTYVPEVIALSKLSTMLDHWPEERQIMFCDET--ELGVASSLASASRG 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E++ LHS+P    +SLGPRILR+DTAAVAAM + QA  GDW
Sbjct: 184 P-WAILIGPEGGFSPAERKRLHSMPEAHVVSLGPRILRADTAAVAAMTIWQAALGDW 239


>gi|183596310|ref|ZP_02958338.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827]
 gi|188023914|gb|EDU61954.1| hypothetical protein PROSTU_00045 [Providencia stuartii ATCC 25827]
          Length = 243

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I T      D  +++  VLRM  G  + LF+G +  + ++IS   K  
Sbjct: 2   RIPRIYHPEPLQINTTIALGDDAANHVGRVLRMTAGQKLELFDGSNQVFCAEISEATKKK 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S +      +  +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  VSVNIIDSHVDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDP 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +   I+A EQC    +P I P  +LE      D   ++        S N+
Sbjct: 122 ERLEKKRQQWQKIAIAACEQCGRNRIPQIRPVQSLEAWCAEEDGAFKVNLHPRATQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      A +  V +LIGPEGG   EE     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----AELNKVRLLIGPEGGLSEEEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRLGD 241


>gi|148253212|ref|YP_001237797.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp. BTAi1]
 gi|146405385|gb|ABQ33891.1| hypothetical protein BBta_1682 [Bradyrhizobium sp. BTAi1]
          Length = 250

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/237 (44%), Positives = 150/237 (63%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RL+VD PL      +   DQ +YL +VLR+  G  +L+FNG+DGEW   I    +    
Sbjct: 9   PRLYVDAPLQHGAHVELDRDQSNYLGNVLRLGAGGRVLVFNGRDGEWQGLIGGRKRPDSL 68

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +E+++R Q + +D+ Y+F+P+K  RLDYM+QK+VEMG+ ++ PVITR+TQ +  N +R+
Sbjct: 69  TIEHRTRPQDRLADLAYVFAPLKHARLDYMVQKAVEMGVSSLAPVITRHTQVSRVNGERM 128

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC IL+L  +  P +LE  L     +  +VF DE     + L+ L   +  
Sbjct: 129 RANVIEAAEQCGILSLAEVREPVSLERFLAQRPPDRLLVFCDEAADVADPLQALRGGSDY 188

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +LIGPEGG+ SEE+E L   P V  ++LGPRILR+DTA VAA+AL+QA  GDW
Sbjct: 189 AGIDLLIGPEGGFASEERELLLRQPLVLRVALGPRILRADTAGVAALALIQATLGDW 245


>gi|300723910|ref|YP_003713221.1| hypothetical protein XNC1_3049 [Xenorhabdus nematophila ATCC 19061]
 gi|297630438|emb|CBJ91103.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 243

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R++   PL I+T+   S D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RTPRIYHPEPLSIETEIYLSDDAANHVGRVLRMSLGQELQLFDGSNQIFNAEITETSKKT 61

Query: 66  RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   +        ++       +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  VKIRILNGKFSDHESPLNLHLGQVMSRGEKMEFTIQKSVELGVSTITPLLSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   K  D + ++        S N+
Sbjct: 122 ERLEKKLQQWKKIAISACEQCGRNRIPEIRPVMSLEAWCKENDDSLKLNLHPRASQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LTL-----PVKKVRLLIGPEGGLSAEEIDMTAKYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|149375982|ref|ZP_01893748.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893]
 gi|149359619|gb|EDM48077.1| hypothetical protein MDG893_03350 [Marinobacter algicola DG893]
          Length = 244

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/247 (32%), Positives = 126/247 (51%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ D PL          +   ++  VLRM+ G  +LLFNG   ++ + I+  GK  
Sbjct: 2   RIPRIYTDSPLSEGATAGLDDNAAQHVGRVLRMQPGQELLLFNGDGNDYPATITEAGKKH 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V   S + T+   ++    +  K +R+DY +QK+VEMG+  I P+ T         
Sbjct: 62  VSVEVGTPSANATESHLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERCDVKLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176
                 +   ++  ISAAEQC    +P I P  TL    +N  D + ++V    T  S N
Sbjct: 122 DREDKRLRHWQSVAISAAEQCGRARVPEIVPVMTLSEWFENSGDCDLRLVLHHRTEQSLN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L      A    VA++IGPEGG   +E     +  F+ P++LGPR+LR++TA VAAMAL
Sbjct: 182 TL------AKPTRVALMIGPEGGLSPDEITAAANAGFL-PVALGPRVLRTETAPVAAMAL 234

Query: 237 VQAICGD 243
            Q + GD
Sbjct: 235 CQWLWGD 241


>gi|312963582|ref|ZP_07778063.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6]
 gi|311282091|gb|EFQ60691.1| hypothetical protein PFWH6_5505 [Pseudomonas fluorescens WH6]
          Length = 239

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 117/248 (47%), Gaps = 19/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F D PL +    +    Q HY++ VLRM EGD + LF+G   E+L  +  VGK  
Sbjct: 2   RLSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKK- 59

Query: 66  RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           R  V+              +       +  R+D+ IQK+ E+G+ AI P+ +        
Sbjct: 60  RVTVQLTQHFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRLK 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   R   ISA EQC   T+P I+PP  L   LK  + + ++V          
Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVLHP------- 172

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E + + A   ++A LIGPEGG    E ET     +     LGPR+LR++TA V A+A+
Sbjct: 173 VAEPMVSHAKPSSLAFLIGPEGGLTDNEVETAQGAGY-HAARLGPRVLRTETAPVVALAV 231

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 232 AQQLWGDF 239


>gi|84685244|ref|ZP_01013143.1| hypothetical protein 1099457000257_RB2654_10264 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666976|gb|EAQ13447.1| hypothetical protein RB2654_10264 [Rhodobacterales bacterium
           HTCC2654]
          Length = 241

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 136/237 (57%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RLFVD  L          D+ HYL  V+R   GD + LFNG+DGEW ++++  GK     
Sbjct: 8   RLFVDESLREGQTIPLERDKAHYLFGVMRQAVGDRVALFNGRDGEWTAEVTLAGKRNGVL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV+T +T +    +DR+
Sbjct: 68  TCLGQAAPQLDPPDLWLMFAPIKKARTDFIVEKAAEMGASRIVPVLTEFTNSERVRVDRL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +  P  L+ LL  WD   +++F DE    EN  + L   A  
Sbjct: 128 QAHAVEAAEQCGGTFVPEVAEPEKLDRLLDGWDGARRLMFCDEALAGEN--KPLSGAAGA 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E++ LH +     +SLGPRILR+DTAAVAAM L Q+  GDW
Sbjct: 186 P-WAILIGPEGGFSDAERKRLHGMESAVSVSLGPRILRADTAAVAAMTLWQSALGDW 241


>gi|152984501|ref|YP_001345914.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PA7]
 gi|150959659|gb|ABR81684.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 240

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R FVD PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFVDQPLALGQH-DLPEAQAHYIGRVLRHATGDAVQLFDGSGREYLGELIEVGKKN 60

Query: 65  IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q   Q      +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   +LP I+PP  LE  L+  D   ++V           
Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPRIHPPLALEDWLRQRDDELRLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L + A   ++A L+GPEGG    E E   +  F +   LGPR+LR++TA V A+A+ 
Sbjct: 176 --PLASHARPASLAFLVGPEGGLGDAEVEQAQAAGFHSA-RLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|213971885|ref|ZP_03399986.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
 gi|301385288|ref|ZP_07233706.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061292|ref|ZP_07252833.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato K40]
 gi|302131396|ref|ZP_07257386.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923369|gb|EEB56963.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
          Length = 239

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  +   Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|283835293|ref|ZP_06355034.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220]
 gi|291068451|gb|EFE06560.1| 16S rRNA methyltransferase RsmE [Citrobacter youngae ATCC 29220]
          Length = 243

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +Q     D  +++  VLRM  G  + LF+G +  + ++I++  K  
Sbjct: 2   RIPRIYHPEPLTSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV   +   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VDVKVLNVELDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  + +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|28872189|ref|NP_794808.1| hypothetical protein PSPTO_5076 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855443|gb|AAO58503.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 239

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFSGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           +R ++  +   Q +    +       +  R+D+ IQK+ E+G+  I P+++   +     
Sbjct: 61  VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                     +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|192360419|ref|YP_001980593.1| hypothetical protein CJA_0070 [Cellvibrio japonicus Ueda107]
 gi|190686584|gb|ACE84262.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus
           Ueda107]
          Length = 241

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++ +  L    + +      H+L+ VLRM+ G  ++LFNG  GE+ + I  + K  
Sbjct: 2   RIPRIYTNQTLLTGNKVQLEESASHHLSKVLRMQPGRELVLFNGAGGEFAATIDEISKRH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +Q   +    +  R ++++QK+ E+G+  I P++T  T      
Sbjct: 62  VTASIAAHNPHNRESPLQLELAIGISRGERFEWVLQKATELGVTKITPLMTERTEVKVSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M+R +   ISA EQC    LP +  P  +   LK  D   + V           
Sbjct: 122 ERQEKIMERWQHILISACEQCQRNLLPQLSAPVPITDWLKTVDAELRFVLHHRDS----- 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L A     + A+LIGPEGG   +E        F   L+LGPR+LR++TA +AA+++V
Sbjct: 177 -QTLPADKKPHSAALLIGPEGGLSDDEIALAKQQEFA-ALTLGPRVLRTETAPIAAISVV 234

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 235 QYLWGDF 241


>gi|188534950|ref|YP_001908747.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99]
 gi|188029992|emb|CAO97876.1| Conserved hypothetical protein YggJ [Erwinia tasmaniensis Et1/99]
          Length = 243

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL    +   S +  +++  VLRM  G  + LF+G D  + ++I+   K  
Sbjct: 2   RIPRIYHPAPLDAGNEIALSEEAANHVGRVLRMGPGQRLELFDGTDLTFAAEITQADKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                + +R  +++S +      +  +  ++++ IQK+VE+G+  I P+ +         
Sbjct: 62  VHVRIHTARDDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P +    TLE      D   ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRIPEVRQAMTLEAWCAEQDRGLKLNLHPRADHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEISMTARYGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|325273070|ref|ZP_08139378.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
 gi|324101804|gb|EGB99342.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
          Length = 239

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +         Q HY+  VLRM  GD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFIDAPLSLGEH-DLPEAQAHYVGRVLRMAPGDAVQLFDGSGQEYRGHLLEVGKKT 60

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  ++     Q      +       +  R+D+ IQK+ E+G  AI P+I+         
Sbjct: 61  VRVSLDQAFAGQADSPLHIHLGQGLSRGERMDWAIQKATELGANAITPIISERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   TLP I PPTTL   L +     ++V           
Sbjct: 121 ERADKRLAHWRQVAISACEQCGRSTLPAINPPTTLAEWLSSTHAELKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A    +A LIGPEGG    E E      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHARPATLAFLIGPEGGLGDAEVEQAQRAGF-QAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|120555960|ref|YP_960311.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei
           VT8]
 gi|120325809|gb|ABM20124.1| 16S rRNA m(3)U-1498 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 244

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F D PL +  Q +   +  +++  VLRM+ G  +LLFNG   ++ + I+  GK  
Sbjct: 2   RIPRIFTDSPLAVGGQCQLDDNAANHVGRVLRMQAGQALLLFNGDGQDYHATITEAGKKH 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++  V   + ++T+ S  V    +  K +R+DY +QK+VEMG+  I P+ T         
Sbjct: 62  VQVAVTEAAENETESSLRVVLAQTLSKGDRMDYAVQKAVEMGVSEIVPLTTERCDVKLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
                 +   +   ISAAEQC    +P I P  T++  L++    + ++V    T  S N
Sbjct: 122 DREDKRLRHWQQVAISAAEQCGRARVPEIQPVMTVQQWLEHARACDLRLVLHHRTERSLN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +LEK        ++A++IGPEGG  +EE        F+ P++LGPR+LR++TA VAA+AL
Sbjct: 182 TLEK------PSSIALMIGPEGGLTAEEIALAEDNGFL-PVALGPRVLRTETAPVAAIAL 234

Query: 237 VQAICGD 243
            Q + GD
Sbjct: 235 CQWLWGD 241


>gi|170765588|ref|ZP_02900399.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627]
 gi|170124734|gb|EDS93665.1| 16S rRNA methyltransferase RsmE [Escherichia albertii TW07627]
          Length = 243

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E +         +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGRLDDHESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P  +LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMSLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|301027303|ref|ZP_07190649.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1]
 gi|300395109|gb|EFJ78647.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 69-1]
          Length = 255

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 14  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 74  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 133

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 134 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 193

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 194 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 247

Query: 238 QAICGD 243
           Q   GD
Sbjct: 248 QVRFGD 253


>gi|28899384|ref|NP_798989.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839188|ref|ZP_01991855.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|260366255|ref|ZP_05778714.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus K5030]
 gi|260878928|ref|ZP_05891283.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AN-5034]
 gi|260898271|ref|ZP_05906767.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus Peru-466]
 gi|260903375|ref|ZP_05911770.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AQ4037]
 gi|28807620|dbj|BAC60873.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747290|gb|EDM58274.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|308085866|gb|EFO35561.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus Peru-466]
 gi|308090439|gb|EFO40134.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AN-5034]
 gi|308107481|gb|EFO45021.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus AQ4037]
 gi|308113508|gb|EFO51048.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           parahaemolyticus K5030]
          Length = 243

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPETIHQLGTIALSEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKKN 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    +     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VLVDVTERVESNIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   +      ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  SEE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|268593084|ref|ZP_06127305.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131]
 gi|291311353|gb|EFE51806.1| 16S rRNA methyltransferase RsmE [Providencia rettgeri DSM 1131]
          Length = 243

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I T      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLQINTTISLGDDAANHVGRVLRMTAGQKLELFDGSNQTFSAEITEATKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            F     S+   ++S +      +  +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  VFVHIENSQIDDRESPLDLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P  TLE      D   ++        S N+
Sbjct: 122 ERLEKKLLQWQKIAIAACEQCGRNRIPEIRPVQTLEAWCTENDGAFKVNLHPRATESINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPT-----ELKKVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRLGD 241


>gi|90020116|ref|YP_525943.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
 gi|89949716|gb|ABD79731.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
          Length = 241

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+++D P+         G   HYL  VLRM+ G  ++LFNGK GE+ + I   GK  
Sbjct: 2   RIPRIYIDKPITANANLDLDGPTAHYLLKVLRMESGRELILFNGKGGEYSAVIESAGKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            F    +  ++  +S +Q        + +R+D+++QK+ E+G+  I P+    +      
Sbjct: 62  VFCKVGKHNTRESESSLQTELAIGISRGDRMDWVLQKATELGVSRIIPLFADRSEVKLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M   +   ISA EQC   TLP + P   L+  L +     + V    T      
Sbjct: 122 ERLEKKMQHWQQILISACEQCTRNTLPTLLPACPLDEYLASTQAEQKFVLHHRTH----- 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +KL  I    + A+LIGPEGG    E +      F   L+LGPRILR++TA +AA++++
Sbjct: 177 -KKLRDITKPKSAALLIGPEGGLTDNEIQNAERKGF-NALALGPRILRTETAPIAALSIL 234

Query: 238 QAICGD 243
           Q + GD
Sbjct: 235 QFVWGD 240


>gi|197284242|ref|YP_002150114.1| hypothetical protein PMI0341 [Proteus mirabilis HI4320]
 gi|227357855|ref|ZP_03842203.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC
           29906]
 gi|194681729|emb|CAR40885.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227161965|gb|EEI46983.1| protein of hypothetical function DUF558 [Proteus mirabilis ATCC
           29906]
          Length = 243

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   TQ   + +  +++  VLRM +G  + LF+G +  + + I    K  
Sbjct: 2   RIPRIYHPEPLSAGTQTSLAEEAANHVGRVLRMSKGQKLALFDGSNQVFDADIIESSKKS 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q   +    D+       +  ++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VIVQINEGQMDDRESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDP 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   ISA EQC    +P + P  +LE      D + ++        S N+
Sbjct: 122 SRLEKKHQQWQKIIISACEQCGRNKIPQLMPVMSLEAWCAQTDDSLKLNLHPRASQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG   EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVKKVRLLIGPEGGLSPEEIAMTAKYHF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|254230223|ref|ZP_04923615.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262393236|ref|YP_003285090.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25]
 gi|151937255|gb|EDN56121.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262336830|gb|ACY50625.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. Ex25]
          Length = 243

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG ++LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPETIHQLGSLALSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKKT 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   K      ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRANYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  SEE E      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|324005502|gb|EGB74721.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 57-2]
          Length = 261

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 20  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 79

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 80  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 139

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 140 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 199

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 200 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 253

Query: 238 QAICGD 243
           Q   GD
Sbjct: 254 QVRFGD 259


>gi|300995473|ref|ZP_07181121.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1]
 gi|300304835|gb|EFJ59355.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 200-1]
          Length = 254

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 13  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 72

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 73  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 132

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 133 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 192

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 193 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 246

Query: 238 QAICGD 243
           Q   GD
Sbjct: 247 QVRFGD 252


>gi|89070197|ref|ZP_01157525.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516]
 gi|89044213|gb|EAR50364.1| hypothetical protein OG2516_16646 [Oceanicola granulosus HTCC2516]
          Length = 237

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 95/237 (40%), Positives = 138/237 (58%), Gaps = 5/237 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL          +Q HYL  V+R+ EG  +LLFNG+DGEW ++++  GK     
Sbjct: 5   RLYVDHPLGAGQTVPLIREQAHYLFGVMRLGEGAEVLLFNGRDGEWSARVAEAGKRGGTL 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+R      D+  +F+P+K  R D++++K+VEMG   + PV T +T +     DR+
Sbjct: 65  ACAAQTRPLAPPPDLWLLFAPVKKARTDFIVEKAVEMGAARLCPVQTEFTNSERIRRDRL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC   T+P +     L+ LL  WD + +I+  DET   +++       A  
Sbjct: 125 QAHAVEAAEQCGATTVPEVADLARLDRLLDGWDPSRRIMLCDETRAGDDAALP----AEP 180

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+  L +LPF  P++LGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 181 GPWAILIGPEGGFSDAERARLAALPFTRPVALGPRILRADTAAVAALTLWQTQLGDW 237


>gi|194431744|ref|ZP_03064035.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012]
 gi|194420100|gb|EDX36178.1| 16S rRNA methyltransferase RsmE [Shigella dysenteriae 1012]
 gi|320181049|gb|EFW55970.1| Ribosomal RNA small subunit methyltransferase E [Shigella boydii
           ATCC 9905]
 gi|332086875|gb|EGI92011.1| RNA methyltransferase family protein [Shigella boydii 5216-82]
 gi|332087723|gb|EGI92850.1| RNA methyltransferase family protein [Shigella dysenteriae 155-74]
          Length = 243

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VKVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEHDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|330878069|gb|EGH12218.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 239

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQLTECFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  D + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTDADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E     +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHARPASLAFLIGPEGGLNDAEVHQAQTAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|212709359|ref|ZP_03317487.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM
           30120]
 gi|212688271|gb|EEB47799.1| hypothetical protein PROVALCAL_00395 [Providencia alcalifaciens DSM
           30120]
          Length = 243

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I T      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RVPRIYHPEPLQINTTISLCDDAANHVGRVLRMTAGQQLELFDGSNHIFNAEITEATKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            F     S    ++S +      +  +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  VFVRVLNSTLDDRESPLDIHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVRLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P  +LE      D   +I        S N+
Sbjct: 122 ERLEKKLQQWQKIAIAACEQSGRNRIPVIRPVQSLEAWCAENDGAFKINLHPRASESINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      A + +V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----ADLKHVRLLIGPEGGLSADEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRLGD 241


>gi|194436810|ref|ZP_03068910.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1]
 gi|194424292|gb|EDX40279.1| 16S rRNA methyltransferase RsmE [Escherichia coli 101-1]
          Length = 243

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        I  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PIERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|114705941|ref|ZP_01438844.1| surface protein [Fulvimarina pelagi HTCC2506]
 gi|114538787|gb|EAU41908.1| surface protein [Fulvimarina pelagi HTCC2506]
          Length = 295

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 2/238 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV+  +   T   A+  Q +YL +VLR  EGD++LLFNG+DGEW +++    K  + 
Sbjct: 55  PRLFVEERITADTPIAATSPQANYLLNVLRKDEGDSVLLFNGQDGEWRAELRKASKKKLD 114

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                + R Q    D+ Y F+P+K  RLDYM+QK+VEMG G ++PV+T  TQN     D+
Sbjct: 115 LFPVAKVRVQQPPYDLIYCFAPLKVGRLDYMVQKAVEMGAGILQPVLTHRTQNHRVRTDK 174

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC IL +P    P   + LL NW  +  +VF DE   + + ++ L  +  
Sbjct: 175 IRANAIEAAEQCGILAIPECREPVKFDDLLSNWSSSIPLVFCDEKMDAASPIDALRELGD 234

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                ++IGPEGG+  +E+ +L    F T +SLGPRILR+DTAAVAA+ +VQA+CGDW
Sbjct: 235 GRK-GLIIGPEGGFSQDERVSLLGAEFTTAISLGPRILRADTAAVAALTMVQAVCGDW 291


>gi|237808014|ref|YP_002892454.1| hypothetical protein Tola_1251 [Tolumonas auensis DSM 9187]
 gi|237500275|gb|ACQ92868.1| protein of unknown function DUF558 [Tolumonas auensis DSM 9187]
          Length = 243

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ + PL +        D  +++  VLRM     I LFNG+ G++ + I+  GK  
Sbjct: 2   RVPRIYQNSPLNVGASVSLDDDAANHVGRVLRMVPDQEICLFNGQGGQYQAVITESGKKH 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  K+ ++ + S      +       + +++++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKITDFSAHSVESPLSIHLGQVISRGDKMEFTIQKSVELGVNVITPLWSSRCGVKLQG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +++ +   ISA EQC   ++P I P  +LE  L       ++        S  +
Sbjct: 122 DRLDKKLEQWQKIAISACEQCGRNSVPLIRPVMSLENWLAEPTDELKLTLHPRAQYSVGT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +         V ++IGPEGG   +E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PTHGVRLVIGPEGGLSDDEIALTEQYNFQEML-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QCRFGD 241


>gi|188496461|ref|ZP_03003731.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638]
 gi|218701656|ref|YP_002409285.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI39]
 gi|254162856|ref|YP_003045964.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli B str.
           REL606]
 gi|301027729|ref|ZP_07191039.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1]
 gi|331684573|ref|ZP_08385165.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299]
 gi|188491660|gb|EDU66763.1| 16S rRNA methyltransferase RsmE [Escherichia coli 53638]
 gi|218371642|emb|CAR19481.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|242378472|emb|CAQ33256.1| 16S rRNA m[3]U1498 methyltransferase monomer, subunit of 16S rRNA
           m[3]U1498 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253974757|gb|ACT40428.1| hypothetical protein ECB_02776 [Escherichia coli B str. REL606]
 gi|253978923|gb|ACT44593.1| hypothetical protein ECD_02776 [Escherichia coli BL21(DE3)]
 gi|299879165|gb|EFI87376.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 196-1]
 gi|309703301|emb|CBJ02637.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|323936051|gb|EGB32346.1| RsmE family protein RNA methyltransferase [Escherichia coli E1520]
 gi|323966463|gb|EGB61896.1| RsmE family protein RNA methyltransferase [Escherichia coli M863]
 gi|323971707|gb|EGB66935.1| RsmE family protein RNA methyltransferase [Escherichia coli TA007]
 gi|323978759|gb|EGB73840.1| RsmE family protein RNA methyltransferase [Escherichia coli
           TW10509]
 gi|327251714|gb|EGE63400.1| RNA methyltransferase family protein [Escherichia coli STEC_7v]
 gi|331078188|gb|EGI49394.1| 16S rRNA methyltransferase RsmE [Escherichia coli H299]
 gi|332344845|gb|AEE58179.1| RNA methyltransferase [Escherichia coli UMNK88]
          Length = 243

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|260599273|ref|YP_003211844.1| ribosomal RNA small subunit methyltransferase E [Cronobacter
           turicensis z3032]
 gi|260218450|emb|CBA33577.1| Ribosomal RNA small subunit methyltransferase E [Cronobacter
           turicensis z3032]
          Length = 243

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL + ++     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLVVGSEIALDEDAANHVGRVLRMSAGQALQLFDGSNQVFAAEITQANKKS 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                V  +  ++     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VLVNVVSAEEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMDLEAWCAEPDTGLKLNLHPRAAHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|30064262|ref|NP_838433.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str.
           2457T]
 gi|38704129|ref|NP_311849.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. Sakai]
 gi|56480218|ref|NP_708711.2| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 2a str.
           301]
 gi|89109723|ref|AP_003503.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|90111515|ref|NP_417421.4| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|110643095|ref|YP_670825.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 536]
 gi|110806854|ref|YP_690374.1| 16S ribosomal RNA methyltransferase RsmE [Shigella flexneri 5 str.
           8401]
 gi|117625173|ref|YP_854161.1| hypothetical protein APECO1_3575 [Escherichia coli APEC O1]
 gi|157156709|ref|YP_001464298.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli E24377A]
 gi|157162405|ref|YP_001459723.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli HS]
 gi|161367531|ref|NP_289518.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           EDL933]
 gi|161486126|ref|NP_755407.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli CFT073]
 gi|162138377|ref|YP_542314.2| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UTI89]
 gi|168747562|ref|ZP_02772584.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753898|ref|ZP_02778905.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760088|ref|ZP_02785095.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766953|ref|ZP_02791960.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773415|ref|ZP_02798422.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781805|ref|ZP_02806812.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785804|ref|ZP_02810811.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC869]
 gi|168797521|ref|ZP_02822528.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC508]
 gi|170018813|ref|YP_001723767.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ATCC
           8739]
 gi|170082498|ref|YP_001731818.1| hypothetical protein ECDH10B_3121 [Escherichia coli str. K-12
           substr. DH10B]
 gi|191171800|ref|ZP_03033346.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11]
 gi|195937084|ref|ZP_03082466.1| 16S rRNA m3U1498 methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807472|ref|ZP_03249809.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813470|ref|ZP_03254799.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818613|ref|ZP_03258933.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396394|ref|YP_002272426.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|217326972|ref|ZP_03443055.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555505|ref|YP_002388418.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli IAI1]
 gi|218559937|ref|YP_002392850.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli S88]
 gi|218691070|ref|YP_002399282.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli ED1a]
 gi|218706461|ref|YP_002413980.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UMN026]
 gi|238902068|ref|YP_002927864.1| hypothetical protein BWG_2668 [Escherichia coli BW2952]
 gi|253772216|ref|YP_003035047.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254794898|ref|YP_003079735.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. TW14359]
 gi|256024545|ref|ZP_05438410.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia sp. 4_1_40B]
 gi|261226258|ref|ZP_05940539.1| hypothetical protein EscherichiacoliO157_16928 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256484|ref|ZP_05949017.1| hypothetical protein EscherichiacoliO157EcO_11691 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284267|ref|YP_003501085.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406453|ref|ZP_06650379.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1412]
 gi|293412306|ref|ZP_06655029.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B354]
 gi|293416207|ref|ZP_06658847.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B185]
 gi|298382190|ref|ZP_06991787.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1302]
 gi|300947676|ref|ZP_07161845.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1]
 gi|306812150|ref|ZP_07446348.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101]
 gi|307139631|ref|ZP_07498987.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli H736]
 gi|312964791|ref|ZP_07779031.1| RNA methyltransferase family protein [Escherichia coli 2362-75]
 gi|331664529|ref|ZP_08365435.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143]
 gi|84027952|sp|P0AGL8|RSME_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|84027953|sp|P0AGL7|RSME_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|84027954|sp|P0AGL9|RSME_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|30042519|gb|AAP18243.1| hypothetical protein S3141 [Shigella flexneri 2a str. 2457T]
 gi|56383769|gb|AAN44418.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|85675756|dbj|BAE77009.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
 gi|87082186|gb|AAC75983.2| 16S rRNA m(3)U1498 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|110344687|gb|ABG70924.1| hypothetical protein YggJ [Escherichia coli 536]
 gi|110616402|gb|ABF05069.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115514297|gb|ABJ02372.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157068085|gb|ABV07340.1| conserved hypothetical protein TIGR00046 [Escherichia coli HS]
 gi|157078739|gb|ABV18447.1| conserved hypothetical protein TIGR00046 [Escherichia coli E24377A]
 gi|169753741|gb|ACA76440.1| protein of unknown function DUF558 [Escherichia coli ATCC 8739]
 gi|169890333|gb|ACB04040.1| predicted protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187770823|gb|EDU34667.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017770|gb|EDU55892.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000650|gb|EDU69636.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358446|gb|EDU76865.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363856|gb|EDU82275.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369285|gb|EDU87701.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373969|gb|EDU92385.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC869]
 gi|189379845|gb|EDU98261.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC508]
 gi|190907835|gb|EDV67428.1| 16S rRNA methyltransferase RsmE [Escherichia coli F11]
 gi|208727273|gb|EDZ76874.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734747|gb|EDZ83434.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738736|gb|EDZ86418.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157794|gb|ACI35227.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319339|gb|EEC27764.1| 16S rRNA methyltransferase RsmE [Escherichia coli O157:H7 str.
           TW14588]
 gi|218362273|emb|CAQ99894.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|218366706|emb|CAR04463.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218428634|emb|CAR09563.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|218433558|emb|CAR14461.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|238863019|gb|ACR65017.1| predicted protein [Escherichia coli BW2952]
 gi|253323260|gb|ACT27862.1| protein of unknown function DUF558 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254594298|gb|ACT73659.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|260448011|gb|ACX38433.1| protein of unknown function DUF558 [Escherichia coli DH1]
 gi|284922889|emb|CBG35978.1| conserved hypothetical protein [Escherichia coli 042]
 gi|290764140|gb|ADD58101.1| hypothetical protein G2583_3605 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291426459|gb|EFE99491.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1412]
 gi|291432396|gb|EFF05378.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B185]
 gi|291469077|gb|EFF11568.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B354]
 gi|294490749|gb|ADE89505.1| conserved hypothetical protein TIGR00046 [Escherichia coli IHE3034]
 gi|298277330|gb|EFI18846.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           FVEC1302]
 gi|300452722|gb|EFK16342.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 116-1]
 gi|305854188|gb|EFM54626.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli NC101]
 gi|307554928|gb|ADN47703.1| 16S rRNA methyltransferase RsmE [Escherichia coli ABU 83972]
 gi|307625480|gb|ADN69784.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli UM146]
 gi|312290347|gb|EFR18227.1| RNA methyltransferase family protein [Escherichia coli 2362-75]
 gi|313647996|gb|EFS12442.1| RNA methyltransferase family protein [Shigella flexneri 2a str.
           2457T]
 gi|315137543|dbj|BAJ44702.1| hypothetical protein ECDH1ME8569_2846 [Escherichia coli DH1]
 gi|315614893|gb|EFU95531.1| RNA methyltransferase family protein [Escherichia coli 3431]
 gi|320189294|gb|EFW63953.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           O157:H7 str. EC1212]
 gi|320195065|gb|EFW69694.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           WV_060327]
 gi|320640592|gb|EFX10131.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. G5101]
 gi|320656635|gb|EFX24531.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662154|gb|EFX29555.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667230|gb|EFX34193.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H7
           str. LSU-61]
 gi|323188660|gb|EFZ73945.1| RNA methyltransferase family protein [Escherichia coli RN587/1]
 gi|323941968|gb|EGB38147.1| RsmE family protein RNA methyltransferase [Escherichia coli E482]
 gi|323951616|gb|EGB47491.1| RsmE family protein RNA methyltransferase [Escherichia coli H252]
 gi|323957330|gb|EGB53052.1| RsmE family protein RNA methyltransferase [Escherichia coli H263]
 gi|323960761|gb|EGB56382.1| RsmE family protein RNA methyltransferase [Escherichia coli H489]
 gi|324115039|gb|EGC09004.1| RsmE family protein RNA methyltransferase [Escherichia fergusonii
           B253]
 gi|325498503|gb|EGC96362.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii
           ECD227]
 gi|326338967|gb|EGD62782.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           O157:H7 str. 1044]
 gi|326343152|gb|EGD66920.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           O157:H7 str. 1125]
 gi|330908981|gb|EGH37495.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           AA86]
 gi|331058460|gb|EGI30441.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA143]
 gi|332752989|gb|EGJ83373.1| RNA methyltransferase family protein [Shigella flexneri 4343-70]
 gi|332765363|gb|EGJ95581.1| ribosomal RNA small subunit methyltransferase E [Shigella flexneri
           2930-71]
 gi|332999693|gb|EGK19278.1| RNA methyltransferase family protein [Shigella flexneri VA-6]
 gi|333000409|gb|EGK19992.1| RNA methyltransferase family protein [Shigella flexneri K-218]
 gi|333000605|gb|EGK20183.1| RNA methyltransferase family protein [Shigella flexneri K-272]
 gi|333015165|gb|EGK34508.1| RNA methyltransferase family protein [Shigella flexneri K-304]
 gi|333015286|gb|EGK34628.1| RNA methyltransferase family protein [Shigella flexneri K-227]
          Length = 243

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|161950046|ref|YP_404631.2| 16S ribosomal RNA methyltransferase RsmE [Shigella dysenteriae
           Sd197]
 gi|309785226|ref|ZP_07679857.1| RNA methyltransferase family protein [Shigella dysenteriae 1617]
 gi|308926346|gb|EFP71822.1| RNA methyltransferase family protein [Shigella dysenteriae 1617]
          Length = 243

 Score =  277 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ ++        
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|84499775|ref|ZP_00998063.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597]
 gi|84392919|gb|EAQ05130.1| hypothetical protein OB2597_07590 [Oceanicola batsensis HTCC2597]
          Length = 241

 Score =  277 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD  L        + DQ HYL  V+RM  GD + LFNG+ GEW +++   GK     
Sbjct: 7   RLYVDHALGEGQTVPLARDQAHYLFGVMRMGVGDAVALFNGRAGEWRAEVVEAGKRAGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   QS  Q    D+   F+PIK  R D++++K+ EMG   I PV T +T +    +DR+
Sbjct: 67  ECVGQSAPQMDPPDLWLAFAPIKKARTDFIVEKATEMGARRILPVQTDFTNSERVRIDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +  P  L  LL  W    Q++F DE      +     + A  
Sbjct: 127 QAHCVEAAEQCGGTFVPEVAEPVKLGTLLSGWPEGRQLMFCDEALAGGPAALPTRSDAP- 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+  L  +    P++LGPR+LR+DTAAVAA+ L Q   GDW
Sbjct: 186 --WAILIGPEGGFSEAERARLRGMDQAHPVALGPRVLRADTAAVAALTLWQDRLGDW 240


>gi|229593101|ref|YP_002875220.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           SBW25]
 gi|229364967|emb|CAY53089.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 239

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F D PL +    +    Q HY++ VLRM EGD + LF+G   E+L  +  VGK  
Sbjct: 2   RLSRFFTDTPLSLGDH-ELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGSLLEVGKKR 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E  +        +       +  R+D+ IQK+ E+G+ AI P+ +         
Sbjct: 61  VTVQLTESVAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSDRCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   T+P I+PP  L   LK  + + ++V           
Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSTVPLIHPPLLLADWLKQTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E + + A   ++A LIGPEGG    E +      +     LGPR+LR++TA V A+A+ 
Sbjct: 174 AEPMVSHAKPSSLAFLIGPEGGLTDAEVQAAQGAGY-HAARLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|215488244|ref|YP_002330675.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O127:H6
           str. E2348/69]
 gi|215266316|emb|CAS10747.1| 16S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69]
          Length = 243

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVISRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|281179955|dbj|BAI56285.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 243

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQVLQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPVMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|300940772|ref|ZP_07155318.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1]
 gi|300454472|gb|EFK17965.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 21-1]
          Length = 253

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 12  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 71

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 72  VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 131

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 132 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 191

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 192 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 245

Query: 238 QAICGD 243
           Q   GD
Sbjct: 246 QVRFGD 251


>gi|330964692|gb|EGH64952.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 239

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           +R ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++   +     
Sbjct: 61  VRVQLNKCFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                     +   ISA EQC    +P I+PP TL   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMTLADWIKLTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPVSLAFLIGPEGGLNDAEVDQAQTAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|218550193|ref|YP_002383984.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia fergusonii
           ATCC 35469]
 gi|218357734|emb|CAQ90378.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
          Length = 243

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPDPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|315295635|gb|EFU54958.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 16-3]
          Length = 253

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 12  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 71

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 72  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 131

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 132 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 191

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 192 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 245

Query: 238 QAICGD 243
           Q   GD
Sbjct: 246 QVRFGD 251


>gi|269101820|ref|ZP_06154517.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161718|gb|EEZ40214.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 243

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +     S D  +++  V+RM+ G  I+LF+G + E+ + I+   K  
Sbjct: 2   RIPRIYHPESLPSQGSVMLSDDAANHVGRVMRMQAGQEIMLFDGSNAEFPAIITNASKK- 60

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +VE Q R +       ++       +  ++++ IQKSVE+G+  I P+I+        
Sbjct: 61  NVEVEIQQRVECSIESPLNIHLGQVVSRGEKMEFTIQKSVELGVNTITPLISERCGVKLN 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQ     +P I P   LE          ++        S N
Sbjct: 121 GERFDKKLAQWQKIAIAACEQSGRNVVPEIRPIMKLEDWCAEEFSGLKLNLHPRAKYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        + +V +LIGPEGG  S+E +   +  F   + LGPR+LR++TAA+ A+  
Sbjct: 181 TLPT-----PVTDVRLLIGPEGGLSSDEIDMTENYNFDE-ILLGPRVLRTETAAMTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|237706401|ref|ZP_04536882.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|254037995|ref|ZP_04872053.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331643639|ref|ZP_08344770.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736]
 gi|331648701|ref|ZP_08349789.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605]
 gi|331654458|ref|ZP_08355458.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718]
 gi|331674427|ref|ZP_08375187.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280]
 gi|12517492|gb|AAG58077.1|AE005525_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26109775|gb|AAN81980.1|AE016766_68 Hypothetical protein yggJ [Escherichia coli CFT073]
 gi|882475|gb|AAA69113.1| ORF_o252 [Escherichia coli str. K-12 substr. MG1655]
 gi|13363294|dbj|BAB37245.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|91073902|gb|ABE08783.1| hypothetical protein UTI89_C3335 [Escherichia coli UTI89]
 gi|209760100|gb|ACI78362.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|209760102|gb|ACI78363.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|209760104|gb|ACI78364.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|209760106|gb|ACI78365.1| hypothetical protein ECs3822 [Escherichia coli]
 gi|226839619|gb|EEH71640.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226899441|gb|EEH85700.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|281602283|gb|ADA75267.1| hypothetical protein SFxv_3218 [Shigella flexneri 2002017]
 gi|331037110|gb|EGI09334.1| 16S rRNA methyltransferase RsmE [Escherichia coli H736]
 gi|331042448|gb|EGI14590.1| 16S rRNA methyltransferase RsmE [Escherichia coli M605]
 gi|331047840|gb|EGI19917.1| 16S rRNA methyltransferase RsmE [Escherichia coli M718]
 gi|331068521|gb|EGI39916.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA280]
          Length = 252

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 71  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244

Query: 238 QAICGD 243
           Q   GD
Sbjct: 245 QVRFGD 250


>gi|262273734|ref|ZP_06051547.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae
           CIP 101886]
 gi|262222149|gb|EEY73461.1| ribosomal RNA small subunit methyltransferase E [Grimontia hollisae
           CIP 101886]
          Length = 243

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F   PL    +   S D  +++  VLRM+ G  +LLF+G   E+ + I+  GK  
Sbjct: 2   RIPRIFHPEPLPDTGRVALSDDAANHVGRVLRMQAGQEVLLFDGSGAEFPAVIAESGKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   V E   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VTVDVAERVERSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNVITPLISERCGVKLNA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+A EQC    +P + P  +L+  ++      ++        S N+
Sbjct: 122 DRFDKKWQQWQKIAIAACEQCGRNIVPEVRPVMSLDAWMQEPFDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  + +LIGPEGG  SEE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVSRLRLLIGPEGGLSSEEIARTRKFGFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|81242430|gb|ABB63140.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 252

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ ++        
Sbjct: 71  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSKRCGVKLDS 130

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244

Query: 238 QAICGD 243
           Q   GD
Sbjct: 245 QVRFGD 250


>gi|258620733|ref|ZP_05715768.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586931|gb|EEW11645.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 243

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPSEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|170682172|ref|YP_001745107.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SMS-3-5]
 gi|170519890|gb|ACB18068.1| 16S rRNA methyltransferase RsmE [Escherichia coli SMS-3-5]
          Length = 243

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNRVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|320645839|gb|EFX14824.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H-
           str. 493-89]
 gi|320651139|gb|EFX19579.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O157:H-
           str. H 2687]
          Length = 243

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKLLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|330812331|ref|YP_004356793.1| RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380439|gb|AEA71789.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 239

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +    +    + HY+  VLRM EGD + +F+G   E+   ++ VGK  
Sbjct: 2   RLSRFFIDAPLSLGDH-ELPEAKAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGKKR 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R +++ Q   Q +    +       +  R+D+ IQK+ E+G+  I P+ +         
Sbjct: 61  VRVQLDEQFAGQPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   ++P I+PP  L   LK  +   ++V           
Sbjct: 121 ERADKRLLHWRQVAISACEQCGRSSVPVIHPPLLLADWLKQTEAELRLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +      +A LIGPEGG    E E   +  +     LGPR+LR++TA V A+A+ 
Sbjct: 174 AEPLVSHDKPSTLAFLIGPEGGLSDAEVEQAKTAGY-HAARLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|237729877|ref|ZP_04560358.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908483|gb|EEH94401.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 243

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+   +Q     D  +++  VLRM  G  + LF+G +  + ++I++  K  
Sbjct: 2   RIPRIYHPEPITSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  +    ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VDVKVLNAELDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  + +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERIRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|161984861|ref|YP_409378.2| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii Sb227]
 gi|187732729|ref|YP_001881719.1| 16S ribosomal RNA methyltransferase RsmE [Shigella boydii CDC
           3083-94]
 gi|191167926|ref|ZP_03029729.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A]
 gi|193063533|ref|ZP_03044622.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22]
 gi|193067437|ref|ZP_03048405.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019]
 gi|194426231|ref|ZP_03058786.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171]
 gi|209920405|ref|YP_002294489.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli SE11]
 gi|218696544|ref|YP_002404211.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli 55989]
 gi|256019252|ref|ZP_05433117.1| 16S ribosomal RNA methyltransferase RsmE [Shigella sp. D9]
 gi|260845616|ref|YP_003223394.1| hypothetical protein ECO103_3526 [Escherichia coli O103:H2 str.
           12009]
 gi|260857079|ref|YP_003230970.1| hypothetical protein ECO26_4045 [Escherichia coli O26:H11 str.
           11368]
 gi|260869633|ref|YP_003236035.1| hypothetical protein ECO111_3694 [Escherichia coli O111:H- str.
           11128]
 gi|293449276|ref|ZP_06663697.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B088]
 gi|300824847|ref|ZP_07104950.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7]
 gi|301306391|ref|ZP_07212460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1]
 gi|301327362|ref|ZP_07220612.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1]
 gi|307310433|ref|ZP_07590081.1| protein of unknown function DUF558 [Escherichia coli W]
 gi|309794035|ref|ZP_07688460.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7]
 gi|331669689|ref|ZP_08370535.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271]
 gi|187429721|gb|ACD08995.1| 16S rRNA methyltransferase RsmE [Shigella boydii CDC 3083-94]
 gi|190902011|gb|EDV61757.1| 16S rRNA methyltransferase RsmE [Escherichia coli B7A]
 gi|192930810|gb|EDV83415.1| 16S rRNA methyltransferase RsmE [Escherichia coli E22]
 gi|192959394|gb|EDV89829.1| 16S rRNA methyltransferase RsmE [Escherichia coli E110019]
 gi|194415539|gb|EDX31806.1| 16S rRNA methyltransferase RsmE [Escherichia coli B171]
 gi|209913664|dbj|BAG78738.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353276|emb|CAU99232.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|257755728|dbj|BAI27230.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257760763|dbj|BAI32260.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257765989|dbj|BAI37484.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|291322366|gb|EFE61795.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
           B088]
 gi|300522685|gb|EFK43754.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 119-7]
 gi|300838386|gb|EFK66146.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 124-1]
 gi|300846046|gb|EFK73806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 78-1]
 gi|306909328|gb|EFN39823.1| protein of unknown function DUF558 [Escherichia coli W]
 gi|308122442|gb|EFO59704.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 145-7]
 gi|315062252|gb|ADT76579.1| 16S rRNA methyltransferase [Escherichia coli W]
 gi|315256838|gb|EFU36806.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 85-1]
 gi|320174058|gb|EFW49228.1| Ribosomal RNA small subunit methyltransferase E [Shigella
           dysenteriae CDC 74-1112]
 gi|320184293|gb|EFW59105.1| Ribosomal RNA small subunit methyltransferase E [Shigella flexneri
           CDC 796-83]
 gi|320202610|gb|EFW77180.1| Ribosomal RNA small subunit methyltransferase E [Escherichia coli
           EC4100B]
 gi|323168002|gb|EFZ53691.1| RNA methyltransferase family protein [Shigella sonnei 53G]
 gi|323180406|gb|EFZ65958.1| RNA methyltransferase family protein [Escherichia coli 1180]
 gi|323183517|gb|EFZ68914.1| RNA methyltransferase family protein [Escherichia coli 1357]
 gi|323377164|gb|ADX49432.1| protein of unknown function DUF558 [Escherichia coli KO11]
 gi|323946556|gb|EGB42579.1| RsmE family protein RNA methyltransferase [Escherichia coli H120]
 gi|324119741|gb|EGC13621.1| RsmE family protein RNA methyltransferase [Escherichia coli E1167]
 gi|331063357|gb|EGI35270.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA271]
 gi|332091330|gb|EGI96418.1| RNA methyltransferase family protein [Shigella boydii 3594-74]
          Length = 243

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|327482639|gb|AEA85949.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
           4166]
          Length = 238

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 20/248 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F+D PL +           HY+  VLR+  G  + LF+G   E+  ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGQHA-LPEASAHYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKK- 59

Query: 66  RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
              VE   R          +       +  R+D+ IQK+ E+G+  I P+I+        
Sbjct: 60  SVSVELHERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCEVRLN 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   R   ISA EQC    LP I+ P TL   L + + + ++V          
Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWL-DVEADLKLVLHP------- 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L + A   ++A LIGPEGG    E E      F+ P  LGPR+LR++TA V A+++
Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDNEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 231 AQQLWGDF 238


>gi|160873963|ref|YP_001553279.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS195]
 gi|160859485|gb|ABX48019.1| protein of unknown function DUF558 [Shewanella baltica OS195]
 gi|315266197|gb|ADT93050.1| protein of unknown function DUF558 [Shewanella baltica OS678]
          Length = 243

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    + + +S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKLLSCEANSSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ     +P + P   L           ++          N 
Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|238787363|ref|ZP_04631162.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           frederiksenii ATCC 33641]
 gi|238724625|gb|EEQ16266.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           frederiksenii ATCC 33641]
          Length = 243

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELTLSDEAANHVGRVLRMGEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 62  LTVRLAEGQPEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   T+P I     L       D + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNTVPEIREAMQLSDWCAEQDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      A +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|209760098|gb|ACI78361.1| hypothetical protein ECs3822 [Escherichia coli]
          Length = 252

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 71  VEVKLLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244

Query: 238 QAICGD 243
           Q   GD
Sbjct: 245 QVRFGD 250


>gi|121728575|ref|ZP_01681596.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674458|ref|YP_001215995.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O395]
 gi|229519855|ref|ZP_04409289.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM
           11079-80]
 gi|229530311|ref|ZP_04419699.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           12129(1)]
 gi|254291180|ref|ZP_04961976.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|261210046|ref|ZP_05924344.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341]
 gi|262167137|ref|ZP_06034851.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC27]
 gi|121629131|gb|EAX61574.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|146316341|gb|ABQ20880.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|150422874|gb|EDN14825.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227012322|gb|ACP08532.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229332084|gb|EEN97572.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           12129(1)]
 gi|229343143|gb|EEO08127.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae TM
           11079-80]
 gi|260840811|gb|EEX67353.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC341]
 gi|262024437|gb|EEY43124.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC27]
 gi|327483322|gb|AEA77729.1| Ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           LMA3894-4]
          Length = 243

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|325292039|ref|YP_004277903.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3]
 gi|325059892|gb|ADY63583.1| hypothetical protein AGROH133_04165 [Agrobacterium sp. H13-3]
          Length = 261

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV+ PL      +A+ +Q++YLA+VLRM +G  ILLFNG+DGEW +++S+
Sbjct: 17  MRANFRMQRLFVETPLVAGAAQEATTEQFNYLANVLRMTDGAEILLFNGRDGEWKARLSF 76

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q+R Q   SD+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 77  PSRKKITLIPLEQTRPQPSASDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 136

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
             +N +++R   I AAEQC IL+LP +  P  L+ +L+ W  + +I++ DE    +N L 
Sbjct: 137 KIHNTEKLRANAIEAAEQCGILSLPDVAEPVKLKDMLETWPRDRRIIYCDEGDAGQNPLP 196

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L +I     +A+L+GPEGG+  EE+E L SL FVTP+ LGPRILR
Sbjct: 197 VLQSIKE-RKIALLVGPEGGFSEEERELLRSLAFVTPIPLGPRILR 241


>gi|331678938|ref|ZP_08379612.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591]
 gi|332280360|ref|ZP_08392773.1| conserved hypothetical protein [Shigella sp. D9]
 gi|81246842|gb|ABB67550.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|331073768|gb|EGI45089.1| 16S rRNA methyltransferase RsmE [Escherichia coli H591]
 gi|332102712|gb|EGJ06058.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 252

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 11  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 70

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 71  VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 131 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 190

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 191 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 244

Query: 238 QAICGD 243
           Q   GD
Sbjct: 245 QVRFGD 250


>gi|217972024|ref|YP_002356775.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS223]
 gi|217497159|gb|ACK45352.1| protein of unknown function DUF558 [Shewanella baltica OS223]
          Length = 243

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F   PL I  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK  
Sbjct: 2   RVPRIFQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                        +S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKLLSCEVNLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   +SA EQ     +P + P   L           ++          N 
Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|121590723|ref|ZP_01678055.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153819149|ref|ZP_01971816.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227080679|ref|YP_002809230.1| hypothetical protein VCM66_0454 [Vibrio cholerae M66-2]
 gi|229507107|ref|ZP_04396613.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX
           330286]
 gi|298501000|ref|ZP_07010801.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121547454|gb|EAX57563.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126510294|gb|EAZ72888.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227008567|gb|ACP04779.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229355852|gb|EEO20772.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae BX
           330286]
 gi|297540248|gb|EFH76308.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 243

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|157085700|gb|ABV15378.1| hypothetical protein CKO_04321 [Citrobacter koseri ATCC BAA-895]
          Length = 254

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   P+   +Q     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 13  RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 72

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV   +    +    +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 73  VDVKVLSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 132

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 133 ERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 192

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 193 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 246

Query: 238 QAICGD 243
           Q   GD
Sbjct: 247 QVRFGD 252


>gi|153802600|ref|ZP_01957186.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124121863|gb|EAY40606.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 243

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKK 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|300921287|ref|ZP_07137656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1]
 gi|300411749|gb|EFJ95059.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 115-1]
          Length = 255

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 14  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 73

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 74  VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 133

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 134 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMVLEAWCAEQDEGLKLNLHPRASNSINT 193

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 194 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 247

Query: 238 QAICGD 243
           Q   GD
Sbjct: 248 QVRFGD 253


>gi|258625617|ref|ZP_05720499.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262172417|ref|ZP_06040095.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           MB-451]
 gi|258582119|gb|EEW06986.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|261893493|gb|EEY39479.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           MB-451]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|153216268|ref|ZP_01950361.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124114357|gb|EAY33177.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQTGQEVLLFDGLGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|156932614|ref|YP_001436530.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530868|gb|ABU75694.1| hypothetical protein ESA_00396 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 14/249 (5%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +   + R++   PL +  +     D  +++  VLRM  G  + LF+G +  + ++I+   
Sbjct: 1   MSMRIPRIYHPEPLVVGREIALDEDAANHVGRVLRMSAGQALQLFDGSNHVFAAEITQAS 60

Query: 63  KSIRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
           K       V  +  ++     +       +  ++++ IQKS+E+G+  I P+ +      
Sbjct: 61  KKSVLVNVVSREEANRESPLFLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVK 120

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +  +  + + +   I+A EQC    +P I P   LE      D   ++        S
Sbjct: 121 LDEERLNKKLQQWQKIAIAACEQCGRNVVPEIRPAMELEAWCAEPDSGLKLNLHPRAAHS 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 181 INTLPQ-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAI 234

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 235 TALQVRFGD 243


>gi|91228680|ref|ZP_01262594.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01]
 gi|91187751|gb|EAS74069.1| hypothetical protein V12G01_13994 [Vibrio alginolyticus 12G01]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R++    +        S D   ++  VLRMKEG ++LLF+G   E+ + IS V K  
Sbjct: 2   RTPRIYHPETIHQLGSLALSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKS 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    +     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VLVNITERLENNIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   K      ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCKEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  SEE E      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|126175723|ref|YP_001051872.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS155]
 gi|152999348|ref|YP_001365029.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella baltica OS185]
 gi|304411141|ref|ZP_07392756.1| protein of unknown function DUF558 [Shewanella baltica OS183]
 gi|307306436|ref|ZP_07586179.1| protein of unknown function DUF558 [Shewanella baltica BA175]
 gi|125998928|gb|ABN63003.1| protein of unknown function DUF558 [Shewanella baltica OS155]
 gi|151363966|gb|ABS06966.1| protein of unknown function DUF558 [Shewanella baltica OS185]
 gi|304350334|gb|EFM14737.1| protein of unknown function DUF558 [Shewanella baltica OS183]
 gi|306910727|gb|EFN41155.1| protein of unknown function DUF558 [Shewanella baltica BA175]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAINQQLNLDEDGAAHIGKVLRMGNGEHISLFNGDGHDYLAEIVDAGKKH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    +   +S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   +SA EQ     +P + P   L           ++          N 
Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|146284257|ref|YP_001174410.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
           A1501]
 gi|145572462|gb|ABP81568.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 238

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 20/248 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F+D PL +           HY+  VLR+  G  + LF+G   E+  ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGQHA-LPEASAHYIGRVLRLSAGSAVQLFDGSGAEYRGELLEVGKK- 59

Query: 66  RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
              VE   R          +       +  R+D+ IQK+ E+G+  I P+I+        
Sbjct: 60  SVSVELYERLAGMPESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPLISERCEVRLN 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   R   ISA EQC    LP I+ P TL   L + + + ++V          
Sbjct: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVTLRDWL-DVEADLKLVLHP------- 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L + A   ++A LIGPEGG    E E      F+ P  LGPR+LR++TA V A+++
Sbjct: 172 VAEPLASHAKPQSLAFLIGPEGGLSDSEVELASGQGFL-PARLGPRVLRTETAPVVALSV 230

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 231 AQQLWGDF 238


>gi|146276272|ref|YP_001166431.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554513|gb|ABP69126.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 257

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 139/250 (55%), Gaps = 14/250 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL      + + DQ HYL  V+R+  G  +LLFNG+DGEW ++++  GK     
Sbjct: 7   RLYVDQPLGPGQPVRLTQDQAHYLFGVMRLARGAAVLLFNGRDGEWRAEVTEAGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+    +  D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  TCAAQTAPLRRPPDLWLMFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177
           + + + AAEQC    +P +     L+ LL  W  + +I++ DE      +          
Sbjct: 127 QAHAVEAAEQCGGTYVPEVAELAALDRLLSGWPADRRIMWCDENLLGARAGLLEGAGAIE 186

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E+  +       AILIGPEGG+  +E+  L  +P V P+SLGPRILR+DTAAVAA+
Sbjct: 187 ARGFEEAPSQPSPGPWAILIGPEGGFSEDEQARLRRMPQVVPVSLGPRILRADTAAVAAL 246

Query: 235 ALVQAICGDW 244
            L Q++ GDW
Sbjct: 247 TLWQSVLGDW 256


>gi|328474086|gb|EGF44891.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio parahaemolyticus
           10329]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ + I  V K  
Sbjct: 2   RIPRIYHPETIHQLGTIALSEDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVIREVSKKN 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    +     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VLVDVTERVESNIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   +      ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEQWCQEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  SEE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIDMTREYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|222034641|emb|CAP77383.1| UPF0088 protein yggJ [Escherichia coli LF82]
 gi|312947477|gb|ADR28304.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTALYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|209694142|ref|YP_002262070.1| 16S ribosomal RNA methyltransferase RsmE [Aliivibrio salmonicida
           LFI1238]
 gi|208008093|emb|CAQ78234.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+     L  + +   S D  +++  V+RMKEG+ +LLF+G   E+ + I+   K  
Sbjct: 2   RIPRIHHPELLPSQGKVNLSDDAANHVGRVMRMKEGEAVLLFDGSGAEFPAVITSSSKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++ E    S     ++       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VEVEISERIDHSSESPLNLHLGQVVSRGDKMEFTIQKSVELGVNIITPLISERCGVKLNK 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +D+     I+A EQC   T+P I P  +LE          ++        S N+
Sbjct: 122 ERFEKKLDQWHKIAIAACEQCGRNTIPEIRPIMSLEEWCAEEYEGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      + NV +LIGPEGG  SEE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVTNVRLLIGPEGGLSSEEITMTEQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|153826558|ref|ZP_01979225.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739650|gb|EDM53864.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLANITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|226328796|ref|ZP_03804314.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198]
 gi|225201982|gb|EEG84336.1| hypothetical protein PROPEN_02696 [Proteus penneri ATCC 35198]
          Length = 243

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKS 64
            + R++   PL   TQ     +  +++  VLRM  G  + LF+G +  + ++I     KS
Sbjct: 2   RIPRIYHPEPLTAGTQTVLGEEASNHVGRVLRMSSGQKLALFDGSNQVFDAEIIESTKKS 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V       +    D+       +  ++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VTVQVNVGIVDDKESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDP 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   ISA EQC   ++P + P  +LE      D + ++          N+
Sbjct: 122 SRLEKKHQQWQKIIISACEQCGRNSIPQLMPVMSLEEWCAQDDGSLKLNLHPRANQRINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG   EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVKKVRLLIGPEGGLSPEEIAMTAEHNF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|262164080|ref|ZP_06031819.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           VM223]
 gi|262027608|gb|EEY46274.1| ribosomal RNA small subunit methyltransferase E [Vibrio mimicus
           VM223]
          Length = 243

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQTGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVRLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|262403905|ref|ZP_06080462.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586]
 gi|262349867|gb|EEY99003.1| ribosomal RNA small subunit methyltransferase E [Vibrio sp. RC586]
          Length = 243

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+   +    S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLSTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                      S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITARVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|330951354|gb|EGH51614.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit
           7]
          Length = 239

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 66  RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +S +  Q     +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQQESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|304396754|ref|ZP_07378634.1| protein of unknown function DUF558 [Pantoea sp. aB]
 gi|304355550|gb|EFM19917.1| protein of unknown function DUF558 [Pantoea sp. aB]
          Length = 243

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I ++     D  +++  VLRM  G  + LF+G +  + ++I++V K  
Sbjct: 2   RIPRIYHAEPLDIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKK- 60

Query: 66  RFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           R KV   E Q         +       +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 61  RVKVSVTESQPDDHESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPLFSERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC    +P I    TLE      D   ++        S N
Sbjct: 121 AERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  
Sbjct: 181 TLPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|262191080|ref|ZP_06049287.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT
           5369-93]
 gi|297580608|ref|ZP_06942534.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|262033056|gb|EEY51587.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae CT
           5369-93]
 gi|297535024|gb|EFH73859.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 243

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITDRVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|229512531|ref|ZP_04402002.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae
           TMA 21]
 gi|229350424|gb|EEO15373.1| small ribosomal subunit 16S rRNA methyltransferase [Vibrio cholerae
           TMA 21]
          Length = 243

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITDRVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCSEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|229593532|ref|YP_001455814.2| 16S ribosomal RNA methyltransferase RsmE [Citrobacter koseri ATCC
           BAA-895]
          Length = 243

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   P+   +Q     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPITSGSQFSLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITNASKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV   +    +    +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VDVKVLSATLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNWVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|153835274|ref|ZP_01987941.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|156975827|ref|YP_001446734.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116]
 gi|148868249|gb|EDL67389.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|156527421|gb|ABU72507.1| hypothetical protein VIBHAR_03572 [Vibrio harveyi ATCC BAA-1116]
          Length = 243

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPETIQQLGVIALSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKKN 61

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
              VE   R +       D+       + +++++ IQKSVE+G+  I P+I+        
Sbjct: 62  VM-VEISERVESSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   ISA EQC    +P I P  +LE   +      ++        S N
Sbjct: 121 QKRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  S+E +      F   L LGPR+LR++TAA+ A+  
Sbjct: 181 TLPT-----PVEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|163738856|ref|ZP_02146269.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis
           BS107]
 gi|161387661|gb|EDQ12017.1| hypothetical protein RGBS107_08461 [Phaeobacter gallaeciensis
           BS107]
          Length = 242

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 131/237 (55%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL          DQ HYL  V+R   G  +LLFNG+DGEW ++++   K S   
Sbjct: 6   RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+R      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  LL +W    Q++F DE              A  
Sbjct: 126 QAHAVEAAEQCGGTYVPEVADLQKLSRLLDHWPEERQLMFCDEAEVGSALALASETAAQA 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AI+IGPEGG+   E++ LH+LP    +SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 186 P-WAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241


>gi|269960438|ref|ZP_06174811.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834865|gb|EEZ88951.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 243

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPETIQQLGAIALSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVSKKN 61

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
              VE   R +       D+       + +++++ IQKSVE+G+  I P+I+        
Sbjct: 62  VM-VEISERVESSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   +SA EQC    +P I P  +LE   +      ++        S N
Sbjct: 121 QKRFEKKLAQWQKIAVSACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  S+E +      F   L LGPR+LR++TAA+ A+  
Sbjct: 181 TLPT-----PVEKVRLLIGPEGGLSSDEIDMTREYQFEETL-LGPRVLRTETAALTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|237798149|ref|ZP_04586610.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021001|gb|EGI01058.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 239

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQVHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           +R ++  +   Q +    +       +  R+D+ IQK+ E+G+  I P+++   +     
Sbjct: 61  VRVQMTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                     +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEIDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|330957011|gb|EGH57271.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 239

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGLEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++      Q +    +       +  R+D+ IQK+ E+G+  I P+I+         
Sbjct: 61  VRVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIISERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   ++  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIRLTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNEAEVDQAQTAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|117921881|ref|YP_871073.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. ANA-3]
 gi|117614213|gb|ABK49667.1| protein of unknown function DUF558 [Shewanella sp. ANA-3]
          Length = 243

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL +  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     + ++   ++       + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ     +P + P   L+          ++          N 
Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQQWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|24372421|ref|NP_716463.1| hypothetical protein SO_0832 [Shewanella oneidensis MR-1]
 gi|24346395|gb|AAN53908.1|AE015528_1 conserved hypothetical protein TIGR00046 [Shewanella oneidensis
           MR-1]
          Length = 243

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL +  Q     D   ++  VLRM  G+ I LFNG   ++L++I    K  
Sbjct: 2   RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGNGEQISLFNGDGHDYLAEIIDAAKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     + ++   ++       + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ     +P + P   L+          ++          N 
Sbjct: 122 ERLDKKIQQWQKIVISACEQSGRSQVPVVRPAMELQQWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETHQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|323162608|gb|EFZ48455.1| RNA methyltransferase family protein [Escherichia coli E128010]
          Length = 243

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEITSASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|113969034|ref|YP_732827.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-4]
 gi|113883718|gb|ABI37770.1| protein of unknown function DUF558 [Shewanella sp. MR-4]
          Length = 243

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL +  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGDGNDYLAEIVDAGKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     + ++   ++       + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ     +P + P   L+          ++          N 
Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|317049423|ref|YP_004117071.1| hypothetical protein Pat9b_3219 [Pantoea sp. At-9b]
 gi|316951040|gb|ADU70515.1| protein of unknown function DUF558 [Pantoea sp. At-9b]
          Length = 243

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F   PL + ++     D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIFHPEPLAVNSEVFLDEDAANHVGRVLRMSAGQRLELFDGSNLTFAAEITQADKKR 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S+   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VKVRVLDSQQDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I    TLE          ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEAADGLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  + +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERIRLLIGPEGGLSTEEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|254226308|ref|ZP_04919899.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621170|gb|EAZ49513.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 243

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGITTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|303238634|ref|ZP_07325167.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2]
 gi|302593753|gb|EFL63468.1| protein of unknown function DUF558 [Acetivibrio cellulolyticus CD2]
          Length = 247

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++           +G+ Y+++  VLR+K  + + L +G   E++++I   G    
Sbjct: 1   MPRFFINSKDVFDDNINITGEDYNHIKKVLRLKCEEIVTLSDGIGNEYVAEIKDFGDGFV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
               +E    +      V       K++++D++IQKSVE+G+  I PV+T  T       
Sbjct: 61  HTKVIESYKNTTEPPIKVTLYQGLPKSDKMDFIIQKSVELGISRIVPVLTERTVVRLDSE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           ++     +R    +  AA+QC+   +P I  P + +  +K   H+  +        S+NS
Sbjct: 121 KDAAKKCERWNRISQEAAKQCNRGIIPKIEVPISFKEAIKKV-HDVPLSLIPYEKESKNS 179

Query: 178 LEK-LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L++ L ++  I  V++ IGPEGG+  +E E   +   ++ ++LGPRILR++TA +  + +
Sbjct: 180 LKQILKSVGDISEVSVFIGPEGGFTEQEIEEAVNCG-LSSVTLGPRILRTETAGITVLTI 238

Query: 237 VQAICGD 243
           +    GD
Sbjct: 239 LMYELGD 245


>gi|114048821|ref|YP_739371.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. MR-7]
 gi|113890263|gb|ABI44314.1| protein of unknown function DUF558 [Shewanella sp. MR-7]
          Length = 243

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL +  Q     D   ++  VLRM  G++I LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAVNQQLNLDEDGAAHIGKVLRMGSGEHISLFNGNGNDYLAEIVDAGKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     + ++   ++       + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKVLSCEANPSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLTG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ     +P + P   L+          ++          N 
Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSQVPIVRPAMELQEWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLSHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|238754605|ref|ZP_04615959.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri
           ATCC 29473]
 gi|238707236|gb|EEP99599.1| Ribosomal RNA small subunit methyltransferase E [Yersinia ruckeri
           ATCC 29473]
          Length = 243

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S D  +++  VLRM EG ++ LF+G +  + ++I +V K  
Sbjct: 2   RIPRIYHPQPLSAHTELALSDDAANHVGRVLRMSEGHHLQLFDGSNQVFSAEIIHVDKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 ++  + ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VHVHLGEAALEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   TLP I     LE      D + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNTLPEIREAMQLEAWCAEQDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E E      F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVNRVRLLIGPEGGLTADEIEMTSHHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|163732851|ref|ZP_02140296.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149]
 gi|161394211|gb|EDQ18535.1| hypothetical protein RLO149_13455 [Roseobacter litoralis Och 149]
          Length = 247

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/237 (40%), Positives = 134/237 (56%), Gaps = 5/237 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL        S DQ HYL  V+R+  G ++L+F+G+ GEWL++++  GK     
Sbjct: 14  RLYVDHPLGEGQSVPVSRDQAHYLFGVMRLGVGAHVLVFDGQSGEWLAEVAQAGKRAGEL 73

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q+R      D+  +F+PIK  R D++++K+VEMG   I PV T +T       DR+
Sbjct: 74  HLLRQTRPLLMPPDLWLLFAPIKKARTDFIVEKAVEMGAARIMPVQTEFTNAGRIQRDRL 133

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+++L  WD    I+F DE    E     L  +   
Sbjct: 134 QAHAVEAAEQCGGTFVPKVDDLARLDWVLGGWDTTRSIMFCDEERAGE----SLTLLQKA 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E E L SL    P+SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 190 GPWAILIGPEGGFSPREHEKLGSLAHAHPVSLGPRILRADTAAVAALTVWQQALGDW 246


>gi|322834233|ref|YP_004214260.1| hypothetical protein Rahaq_3541 [Rahnella sp. Y9602]
 gi|321169434|gb|ADW75133.1| protein of unknown function DUF558 [Rahnella sp. Y9602]
          Length = 243

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   ++   S D  +++  VLRM+ G  I LF+G +  + + I+ V K  
Sbjct: 2   RIPRIYHPEILTAHSEIALSEDAANHVGRVLRMQPGQAIQLFDGSNQVFEASITQVDKKS 61

Query: 66  RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 Q          ++       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VSVSLNQGVLADNESPLNLHLGQVISRGEKMEFTIQKSIELGVNTITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   LE      D + ++        S N+
Sbjct: 122 ERLEKKLQQWQKIAIAACEQCGRNRIPEIRPAMQLEAWCNEQDDSLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        + +V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVSHVRLLIGPEGGLSAEEIAMTSGYGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|269965751|ref|ZP_06179848.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829619|gb|EEZ83856.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 243

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R++    +        S D   ++  VLRMKEG ++LLF+G   E+ + IS V K  
Sbjct: 2   RTPRIYHPETIHQLGSLALSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPAVISDVSKKS 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VLVNITERVESSIESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   +      ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNVVPEIRPIMSLEEWCQEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  SEE E      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSSEEIEMTREYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|302188983|ref|ZP_07265656.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae 642]
          Length = 239

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLNESFAGQVESVLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLTEWIKQTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|146305452|ref|YP_001185917.1| hypothetical protein Pmen_0412 [Pseudomonas mendocina ymp]
 gi|145573653|gb|ABP83185.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudomonas mendocina ymp]
          Length = 241

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 19/247 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F+D PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGQH-DLPEAQAHYIGRVLRHAVGDALQLFDGSGQEYLGELIEVGKK- 59

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +VE +            +       +  R+D+ IQK+ E+G   I P+++        
Sbjct: 60  SVRVELREAIAGMSESPLRIHLGQGLSRGERMDWAIQKATELGAAEITPIVSARCEVRLK 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     M   R   ISA EQC    LP I PP  L   L+  + + ++V          
Sbjct: 120 DERADKRMAHWRQVAISACEQCGRSVLPLINPPLELAAWLQQIEADLKLVLHPVAA---- 175

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L +     ++A L+GPEGG    E +   +  F     LGPR+LR++TA V A+++
Sbjct: 176 ---PLQSHDKPNSLAFLVGPEGGLSEAEVDQTKAAGF-HAARLGPRVLRTETAPVVALSV 231

Query: 237 VQAICGD 243
            Q + GD
Sbjct: 232 AQQLWGD 238


>gi|116054150|ref|YP_788593.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589371|gb|ABJ15386.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 240

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R FVD PL +         Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFVDQPLALGQH-DLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKN 60

Query: 65  IRFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  Q   Q      +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC   +LP I+PP  LE  L+  D   ++V           
Sbjct: 121 ERADKRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDELRLVLHPVAA----- 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L +      +A L+GP+GG    E E   +  F     LGPR+LR++TA V A+A+ 
Sbjct: 176 --PLASHVPPSRLAFLVGPKGGLSDAEVEQAKAAGF-HAARLGPRVLRTETAPVVALAVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|330984681|gb|EGH82784.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009640|gb|EGH89696.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 239

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|229525160|ref|ZP_04414565.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           bv. albensis VL426]
 gi|229338741|gb|EEO03758.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           bv. albensis VL426]
          Length = 243

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S ++
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEAMKLNLHPRAKYSIHT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|323498678|ref|ZP_08103669.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM
           21326]
 gi|323316278|gb|EGA69298.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio sinaloensis DSM
           21326]
          Length = 243

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPDAITQLGSLMLSDDAAGHIGRVLRMKEGQQVLLFDGSGSEFPATISSVSKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V E   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VEVEVTERIERSAESPLDLHLGQVVSRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKMAQWQKIAISACEQCGRNTVPEIRPIMQLEDWCGEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVERVRLLIGPEGGLSAEEISMTEKYKFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|320322008|gb|EFW78104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330886|gb|EFW86860.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330872110|gb|EGH06259.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 239

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|293390908|ref|ZP_06635242.1| 16S rRNA methyltransferase RsmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951442|gb|EFE01561.1| 16S rRNA methyltransferase RsmE [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 244

 Score =  274 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T    S D  +++  VLRM+ GD + LF+G +  + + I+ V K  
Sbjct: 2   RVPRIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVTKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   +   ++S +      +  +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVDILNRQFDNRESHLTIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 ERMEKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAERDEALKLNLHPRASYSIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L ++ A      V +LIG EGG   +E        FV  + LG R+LR++TAA+AA+ ++
Sbjct: 182 LPEIPAA----GVRLLIGSEGGLSPQEIAQTEQQGFVE-VLLGKRVLRTETAAIAAITVL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|330942525|gb|EGH45109.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 239

 Score =  274 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|260575962|ref|ZP_05843957.1| protein of unknown function DUF558 [Rhodobacter sp. SW2]
 gi|259021888|gb|EEW25189.1| protein of unknown function DUF558 [Rhodobacter sp. SW2]
          Length = 245

 Score =  274 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/238 (40%), Positives = 138/238 (57%), Gaps = 2/238 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL +      + DQ +YL  V+R+  GD +LLFNG+DGEW   ++  GK     
Sbjct: 7   RLYVDQPLGVGQPVPLNADQANYLFAVMRLGRGDAVLLFNGRDGEWRGVVAEAGKRGGVL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+R      D+  +F+PIK  R D++++K+ E+G   I PV TR+T       DR+
Sbjct: 67  VCDAQTRPLQMPPDLWLLFAPIKKARTDFIVEKAAELGASRILPVQTRFTNAERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSLEKLHAIAH 186
           + + + AAEQC    +P +     L+ +L  W    ++++ DE   G  ++L  L A A 
Sbjct: 127 QAHAVEAAEQCGGTFVPEVCDLQGLDKVLDTWPAERRLLWCDEHMVGGSSALTGLLATAR 186

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E+  L  LP V P+SLGPRILR+DTAAVAA+ L QA  GDW
Sbjct: 187 GGPWAILIGPEGGFAESEQARLRGLPQVVPISLGPRILRADTAAVAALVLWQAALGDW 244


>gi|259909605|ref|YP_002649961.1| hypothetical protein EpC_29800 [Erwinia pyrifoliae Ep1/96]
 gi|224965227|emb|CAX56759.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|310766488|gb|ADP11438.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
          Length = 243

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL        S +  H++  VLRM  G  + LF+G    + ++I    K  
Sbjct: 2   RIPRIYQPEPLQTGNDIALSEEAAHHVGRVLRMGTGQMLELFDGTGLVFAAEIIQADKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  SR  +++S +      +  +  ++++ IQK+VE+G+  I P+ +         
Sbjct: 62  VCVKINASREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P +     L+      +   ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEITMTAQHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|256004286|ref|ZP_05429268.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
           2360]
 gi|255991720|gb|EEU01820.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
           2360]
          Length = 254

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 123/247 (49%), Gaps = 9/247 (3%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
             + R FV            SG+ ++++  VLR+ +GD + + +G+  ++L +I  +  +
Sbjct: 6   FKMPRFFVRKSDIYGDFINISGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDA 65

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           +     VE    +      V       K++++DY+IQK+VE+G+  I PVIT  T     
Sbjct: 66  VINTRIVEAMKNATEPPLKVTLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMD 125

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            ++     +R    ++ AA+QC+   +P +  P + +  L N   +   +   E      
Sbjct: 126 EKSGSKKYERWNRISMEAAKQCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIK 185

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L + + +  V++ IGPEGG+   E ET  S   + P++LGPRILR++TA +A +++
Sbjct: 186 LKEVLSSSSSVEKVSVFIGPEGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSI 244

Query: 237 VQAICGD 243
           +    GD
Sbjct: 245 LMYELGD 251


>gi|308188039|ref|YP_003932170.1| UPF0088 protein yggJ [Pantoea vagans C9-1]
 gi|308058549|gb|ADO10721.1| UPF0088 protein yggJ [Pantoea vagans C9-1]
          Length = 243

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I ++     D  +++  VLRM  G  + LF+G +  + ++I++V K  
Sbjct: 2   RIPRIYHAGPLEIGSEITLDEDASNHVGRVLRMTAGQRLELFDGTNLTFAAEITHVDKKR 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +S+   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VKVSVTESQPDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I    TLE      D   ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRVPEIREAMTLEAWCAEADSGLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTAQHDF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|311278138|ref|YP_003940369.1| hypothetical protein Entcl_0810 [Enterobacter cloacae SCF1]
 gi|308747333|gb|ADO47085.1| protein of unknown function DUF558 [Enterobacter cloacae SCF1]
          Length = 243

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   P+ +  Q   S D  +++  VLRM  G  I LF+G +  + ++I +  K  
Sbjct: 2   RIPRIYHPEPVTVGQQMALSDDAANHVGRVLRMGIGQAIQLFDGSNQLFDAEIVHADKKS 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R  V   ++  +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VRVTVLKGETDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKIQQWQKIAIAACEQCGRNRIPEIRPAMDLEQWCAEQDDALKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTARYRF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|27364902|ref|NP_760430.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio vulnificus CMCP6]
 gi|37681051|ref|NP_935660.1| hypothetical protein VV2867 [Vibrio vulnificus YJ016]
 gi|320155285|ref|YP_004187664.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus
           MO6-24/O]
 gi|27361047|gb|AAO09957.1| Ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus
           CMCP6]
 gi|37199801|dbj|BAC95631.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319930597|gb|ADV85461.1| ribosomal RNA small subunit methyltransferase E [Vibrio vulnificus
           MO6-24/O]
          Length = 243

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPETIQHLGVIALSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAVISEVGKKS 61

Query: 66  RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E   RS     D+       +  ++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VMVELSERVERSSESPLDLHLGQVISRGEKMEFTIQKSVELGVNTITPLISDRCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P  +LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNTIPEIRPIMSLEAWCAEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  SEE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVTKVRLLIGPEGGLSSEEIDMTQQYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|253990749|ref|YP_003042105.1| 16S ribosomal RNA methyltransferase RsmE [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639080|emb|CAR67692.1| Hypothetical protein yggJ [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782199|emb|CAQ85363.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 270

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 14/248 (5%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +  + R++    L   T+   S +  +++  VLRM  G  + LF+G +  + ++I+   K
Sbjct: 27  NMRIPRIYHPELLSSSTEIYLSDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAEITEASK 86

Query: 64  S-IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             ++  +   + +  +   ++       +  ++++ IQKSVE+G+  I P+I+       
Sbjct: 87  KSVKVHISNSTLADNESPLNLHLGQVISRGEKMEFTIQKSVELGVNTITPLISERCGVKL 146

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   + + +   I+A EQC    +P I P   LE      D + ++        S 
Sbjct: 147 DGDRLAKKLQQWQKIAIAACEQCCRNRIPEIRPVMQLEQWCAENDGSLKLNLHPRANQSI 206

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+L        +  V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+ 
Sbjct: 207 NTLPL-----PVEKVRLLIGPEGGLSTDEIAMTANHQF-TDILLGPRVLRTETTALTAIT 260

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 261 ALQVRFGD 268


>gi|254475767|ref|ZP_05089153.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11]
 gi|214030010|gb|EEB70845.1| conserved hypothetical protein TIGR00046 [Ruegeria sp. R11]
          Length = 242

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 93/237 (39%), Positives = 129/237 (54%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V+ PL          DQ HYL  V+R   G  + LFNG+DGEW ++I+  GK     
Sbjct: 6   RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQAVGGQVSLFNGRDGEWRAEIAEAGKRNGLL 65

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V + QSR      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  VCQEQSRPLMLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTDFTNSDRIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  +L  W    Q++F DE              A  
Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLSRVLDQWPQERQLMFCDEAEVGTALTLAAADHAKA 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AI+IGPEGG+   E++ LH LP    +SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 186 P-WAIVIGPEGGFSEAERKRLHGLPQSHVVSLGPRILRADTAAVAALTIWQQAYGDW 241


>gi|56698449|ref|YP_168823.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria pomeroyi DSS-3]
 gi|56680186|gb|AAV96852.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 251

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 95/246 (38%), Positives = 130/246 (52%), Gaps = 10/246 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+  L      + S DQ HYL  V+R+  GD + LFNG+DGEW +++   GK     
Sbjct: 6   RLYVEQALGQGQPVQVSRDQAHYLFGVMRLGVGDWVALFNGRDGEWQARVGEAGKRGGEL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             E QS       D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  LCESQSAPLRMPPDLWLLFAPIKKARTDFIVEKAAEMGAARIVPVQTEFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL--------- 178
           + + + AAEQC    +P +     L  LL  W    Q++F DET    +S          
Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLGPLLDRWPAERQLMFCDETLAGRSSALSGLLAGQG 185

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E           AILIGPEGG+   E+  L +LP    +SLGPRILR+DTAAVAA+ L Q
Sbjct: 186 ENARTGGPSGPWAILIGPEGGFSERERARLAALPNAHAVSLGPRILRADTAAVAALTLWQ 245

Query: 239 AICGDW 244
              GDW
Sbjct: 246 QALGDW 251


>gi|99078057|ref|YP_611315.1| 16S ribosomal RNA methyltransferase RsmE [Ruegeria sp. TM1040]
 gi|99035195|gb|ABF62053.1| protein of unknown function DUF558 [Ruegeria sp. TM1040]
          Length = 246

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/241 (37%), Positives = 130/241 (53%), Gaps = 5/241 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL          DQ HYL  V+R+     + LFNG+DGEW ++++  GK     
Sbjct: 6   RLYVDHPLGAGQTVPLDRDQAHYLFGVMRLSVAARVALFNGRDGEWQAEVAEAGKRGGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               QS+      D+  IF+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  ACLEQSKPLQLPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVATEFTNSERIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-- 185
           + + + AAEQC    +P +     L  LL +W    Q++F DE    +     +  +   
Sbjct: 126 QAHAVEAAEQCGGTYVPEVAELQKLPSLLDHWPAERQLMFCDEAEIGQRLFLDVAQVEGS 185

Query: 186 --HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                  AILIGPEGG+   E++ LH++P    +SLGPRILR+DTAAVAA+ L Q   GD
Sbjct: 186 AGAAGPWAILIGPEGGFSDAERKRLHAMPQAHVVSLGPRILRADTAAVAALTLWQQRLGD 245

Query: 244 W 244
           W
Sbjct: 246 W 246


>gi|289625569|ref|ZP_06458523.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647472|ref|ZP_06478815.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485033|ref|ZP_07003130.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160443|gb|EFI01467.1| predicted methyltransferase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330865771|gb|EGH00480.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 239

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+G I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +   +  F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|330446905|ref|ZP_08310556.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491096|dbj|GAA05053.1| ribosomal RNA small subunit methyltransferase E [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 243

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  + +   S D  +++  V+RM+ G  +L+F+G D E+ + I+   K  
Sbjct: 2   RIPRIYHPESLPSQGKVMLSDDAANHVGRVMRMQAGQELLMFDGSDAEFPAVITSASKK- 60

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +VE QSR +       ++       + +++++ IQKSVE+G+  I P+I+        
Sbjct: 61  SVEVEIQSRVEHSVESPLNIHLGQVISRGDKMEFTIQKSVELGVSTITPLISERCGVKLN 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +D+ +   I+A EQC    +P I P   LE          ++        S N
Sbjct: 121 AERFEKKLDQWQKIAIAACEQCGRNVVPTIRPVMKLEQWCAEEYDGLKLNLHPRAKYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        + NV +LIGPEGG  +EE        F   + LGPR+LR++T A+ A+  
Sbjct: 181 TLPT-----PVTNVRLLIGPEGGLSAEEIGMTEEYKFDE-ILLGPRVLRTETTAMTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|293394489|ref|ZP_06638785.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582]
 gi|291422954|gb|EFE96187.1| 16S rRNA methyltransferase RsmE [Serratia odorifera DSM 4582]
          Length = 243

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+    PL   T+   S D  +++  VLRM  G  + LF+G +  + ++I+ V K  
Sbjct: 2   RIPRIHHPEPLRSDTEIVLSEDAANHVGRVLRMSPGQLLQLFDGSNQVFDAEITRVDKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   R + ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VQVQIGAGRQEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNTITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +  I P   LE      D + ++        S N+
Sbjct: 122 ERLAKKLQQWQKIAIAACEQCGRNRIADIRPAMPLEAWCAEQDDSLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        + +V +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LAL-----PVNHVRLLIGPEGGLSADEIAMTSAHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|170728459|ref|YP_001762485.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella woodyi ATCC
           51908]
 gi|169813806|gb|ACA88390.1| protein of unknown function DUF558 [Shewanella woodyi ATCC 51908]
          Length = 243

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL I  Q +   +   ++  VLRM  G+ I LFNG   E+LS+I    K  
Sbjct: 2   RIPRIYQASPLQIGNQVELDDEPASHIGRVLRMNAGEQISLFNGDGHEYLSEIISASKKN 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV   + ++++    +       + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VSVKVLSSTLNESESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I A EQ     +P I P  T+E          ++            
Sbjct: 122 ERLEKKIQQWQKIVIGACEQSGRSQVPEIRPAMTIEAWSAEQTDATKLNLHPRAAHGIGG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L         P V +LIGPEGG    E        F T + LGPR+LR++TAA+ A++ +
Sbjct: 182 LSLTS-----PKVRLLIGPEGGLSEAEIMMTEQYQF-TDVLLGPRVLRTETAALTAISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|238918250|ref|YP_002931764.1| hypothetical protein NT01EI_0287 [Edwardsiella ictaluri 93-146]
 gi|238867818|gb|ACR67529.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL I  +     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIVSADKKN 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R +++  +         +       +  ++++ IQKS+E+G+  I P+I+         
Sbjct: 62  VRVRLDGVREEDSESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERCGVRLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +   I+A EQC    +P I P  TLE      D   ++        S N+
Sbjct: 122 ERMAKKQQQWQKIAIAACEQCGRNRIPQIRPIMTLEAWCAEPDDGLRLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           + +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PQHRIRLLIGPEGGLSADEIAMTANHRF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|66043720|ref|YP_233561.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254427|gb|AAY35523.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330971683|gb|EGH71749.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 239

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVTQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|330899324|gb|EGH30743.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 239

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPIPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|238795147|ref|ZP_04638737.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           intermedia ATCC 29909]
 gi|238725546|gb|EEQ17110.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           intermedia ATCC 29909]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIVRSDKKS 61

Query: 66  RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q   +    ++       +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 62  LLVRLGEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I     L       D + ++        S N+
Sbjct: 122 ERLAKKLQQWQKIAIAACEQCGRNRIPEIRSAMQLSDWCAEQDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        + NV +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----PTLNNVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|290476315|ref|YP_003469219.1| hypothetical protein XBJ1_3337 [Xenorhabdus bovienii SS-2004]
 gi|289175652|emb|CBJ82455.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L ++T+   S +  +++  VLRM  G  + LF+G +  + +++    K  
Sbjct: 2   RIPRIYHPERLSVETEIYLSDEAANHVGRVLRMSNGQPLQLFDGSNQVFDAELIEASKKT 61

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I+ ++     S      ++       +  ++++ IQKSVE+G+  I P+++         
Sbjct: 62  IKVRITDGKLSDHESPLNLHLGQVMSRGEKMEFTIQKSVELGVNTITPLLSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE      D + ++        S N+
Sbjct: 122 ERLEKKLQQWKKIVISACEQCGRNCIPEIRPVMSLEAWCAENDGSLKLNLHPRASQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  + +LIGPEGG  +EE E   +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVEKIRLLIGPEGGLSAEEIEMTANHQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|123443620|ref|YP_001007592.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090581|emb|CAL13450.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   ++   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANSELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I    E Q   +    ++       +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 62  LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I     L       D + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAAQDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|308048318|ref|YP_003911884.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630508|gb|ADN74810.1| 16S rRNA m(3)U-1498 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL    Q     D  +++  VLRM+ G  ++LFNG   ++ + I   GK  
Sbjct: 2   RVPRIYQPVPLAAGQQLALDDDGANHIGRVLRMQPGQAVMLFNGDGQQYPAIIDEAGKKN 61

Query: 66  RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   +         +       +  ++++ IQKSVE+G  +I P+ +         
Sbjct: 62  VLVTVQSVEQHHVESPLALHLGQVISRGEKMEFTIQKSVELGAASITPLWSERCGVKLAG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   I+A EQC    +P + P   L+  +       ++        S N+
Sbjct: 122 DRLDKKVAQWQKIAIAACEQCGRNVVPEVRPVMRLDQWMAEPFEGLKLNLHPRAEYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  + +LIGPEGG  +EE        F T + LGPR+LR++TAA+ AM  +
Sbjct: 182 LPE-----PVQALRLLIGPEGGLSAEEIAAAREFDF-TDILLGPRVLRTETAALTAMTAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|120597613|ref|YP_962187.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella sp. W3-18-1]
 gi|146294248|ref|YP_001184672.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella putrefaciens
           CN-32]
 gi|120557706|gb|ABM23633.1| protein of unknown function DUF558 [Shewanella sp. W3-18-1]
 gi|145565938|gb|ABP76873.1| protein of unknown function DUF558 [Shewanella putrefaciens CN-32]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I        D   ++  VLRM  G+NI LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    +   +S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   +SA EQ     +P + P   L           ++          N 
Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPVVRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|114570791|ref|YP_757471.1| 16S ribosomal RNA methyltransferase RsmE [Maricaulis maris MCS10]
 gi|114341253|gb|ABI66533.1| protein of unknown function DUF558 [Maricaulis maris MCS10]
          Length = 254

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 138/249 (55%), Gaps = 12/249 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66
            RLF+D PL        + +  HYL +V+R  EGD + +FNG+DGEW + I++  +    
Sbjct: 5   PRLFIDAPLSASAAIPLAREDAHYLINVMRRGEGDVVRVFNGRDGEWSAVIAHASRKGAG 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V  Q+R Q    D+  +F+P++ ++ + +++K+ E+G   I PV+T  TQ+     +R
Sbjct: 65  LTVADQTRPQQGVPDLWLMFAPVRRSKTELIVEKATELGAAVIAPVVTERTQSDRIKFER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-----------TCGSE 175
           ++  T  AAEQ + L LP +     L  +L NW  +  ++F DE             G  
Sbjct: 125 LQAITKEAAEQTERLDLPELRTSEKLAAVLDNWPDDRLLIFCDESGDEADAAWGGARGRG 184

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +    A A     AILIGPEGG+   E++ L SL  V P++LGPRILR++TAA+AA+ 
Sbjct: 185 QPMAAALAGAGDRPAAILIGPEGGFSPAERDRLRSLQHVVPVTLGPRILRAETAAIAALT 244

Query: 236 LVQAICGDW 244
           + Q+ CGDW
Sbjct: 245 IWQSTCGDW 253


>gi|332162804|ref|YP_004299381.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604355|emb|CBY25853.1| ribosomal RNA small subunit methyltransferase E [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667034|gb|ADZ43678.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330858994|emb|CBX69352.1| ribosomal RNA small subunit methyltransferase E [Yersinia
           enterocolitica W22703]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I    E Q   +    ++       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVDVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I     L       D + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCTEQDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|261250170|ref|ZP_05942746.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis
           CIP 102891]
 gi|260939286|gb|EEX95272.1| ribosomal RNA small subunit methyltransferase E [Vibrio orientalis
           CIP 102891]
          Length = 258

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S D   ++  VLRMKEG  +LLF+G   E+ ++I+ V K  
Sbjct: 17  RIPRIYHPEAINQLGSLMLSDDAAGHIGRVLRMKEGQEVLLFDGSGAEFPAEIASVSKKN 76

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                ++   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 77  VEVSIIQRVERSSESPLDLHLGQVVSRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 136

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 137 KRFEKKLAQWQKIAISACEQCGRNTVPEIRPIMQLEEWCGEEYDGLKLNLHPRAKYSINT 196

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE     +  F   L LGPR+LR++TAA+ A+  +
Sbjct: 197 LPT-----PVEKVRLLIGPEGGLSAEEIGMTENYKFEETL-LGPRVLRTETAALTAITAL 250

Query: 238 QAICGD 243
           Q   GD
Sbjct: 251 QVRFGD 256


>gi|119773713|ref|YP_926453.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella amazonensis
           SB2B]
 gi|119766213|gb|ABL98783.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 243

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F    L    +     D + ++  VLRM EG+ I +FNG   ++L+ I   GK  
Sbjct: 2   RIPRIFQPLDLSPSAEFALDEDGFAHVGRVLRMGEGEQIRVFNGDGKDYLADIVSAGKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     +Q++    +       + +R+D+ +QKSVE+G+  I P+ +         
Sbjct: 62  LTVKVVAVEDNQSESPLHLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P + P   L           ++          N 
Sbjct: 122 ERLDKKIAQWQKIVISACEQCGRATVPVVRPVMDLAEWCAEQTSALKLNLHPRADHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     +   P V +LIGPEGG  +EE     +  F T + LGPR+LR++TAA+ A+  +
Sbjct: 182 L-----VLDNPRVRLLIGPEGGLSAEEIAMTETHKF-TEVLLGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QMKFGD 241


>gi|71737741|ref|YP_272747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558294|gb|AAZ37505.1| uncharacterized conserved protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 239

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTEAPLSLGEH-ELPEAQTHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQDAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|238798622|ref|ZP_04642097.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           mollaretii ATCC 43969]
 gi|238717508|gb|EEQ09349.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           mollaretii ATCC 43969]
          Length = 243

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG N+ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMSEGQNLQLFDGSNQVFTAEIIRVDKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 62  LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   T+P I     L       D + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLSDWCAEQDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG   +E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----PSLNKVRLLIGPEGGLSVDEIAMTSHLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|163741896|ref|ZP_02149286.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10]
 gi|161385069|gb|EDQ09448.1| hypothetical protein RG210_04985 [Phaeobacter gallaeciensis 2.10]
          Length = 242

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+V+ PL          DQ HYL  V+R   G  +LLFNG+DGEW ++++   K S   
Sbjct: 6   RLYVEHPLGAGQSVPLDRDQAHYLFGVMRQTVGAQLLLFNGEDGEWRAEVAEASKRSGVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+R      D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 66  ICQEQTRPLVLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  +L +W    Q++F DE     ++L      A  
Sbjct: 126 QAHAVEAAEQCGGTYVPEVVDLQKLSRVLDHWPEERQLMFCDEAEVG-SALALARDTAVQ 184

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AI+IGPEGG+   E++ LH+LP    +SLGPRILR+DTAAVAA+ + Q   GDW
Sbjct: 185 APWAIVIGPEGGFSEAERKRLHALPQSHVVSLGPRILRADTAAVAALTVWQQRYGDW 241


>gi|162139548|ref|YP_218021.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
          Length = 243

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++ F      S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|70733090|ref|YP_262863.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           Pf-5]
 gi|68347389|gb|AAY94995.1| conserved hypothetical protein TIGR00046 [Pseudomonas fluorescens
           Pf-5]
          Length = 239

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 19/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F+D PL +    +    Q HY+  VLRM EG  + +F+G   E+   +  VGK  
Sbjct: 2   RLSRFFIDAPLSLGEH-ELPEAQAHYIGRVLRMAEGAALQVFDGSGTEFRGALVEVGKK- 59

Query: 66  RFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           R +V+        Q     +       +  R+D+ IQK+ E+G+  I P+ +        
Sbjct: 60  RVRVQLNESFAGQQESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCEVRLK 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   R   ISA EQC    +P I+PP  L   +K    + ++V          
Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSQVPVIHPPVLLADWIKQARADLKLVLHP------- 172

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L + A   ++A LIGPEGG    E E  HS  F+ P  LGPR+LR++TA V A+A+
Sbjct: 173 VAQPLESHAKPASLAFLIGPEGGLTDAEVELSHSAGFL-PARLGPRVLRTETAPVVALAV 231

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 232 AQQLWGDF 239


>gi|126665848|ref|ZP_01736829.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17]
 gi|126629782|gb|EBA00399.1| hypothetical protein MELB17_04747 [Marinobacter sp. ELB17]
          Length = 244

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 16/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++ D PL      +   +   ++  VLRM+ G  + LFNG   ++ + I+   K  
Sbjct: 2   RIPRIYTDTPLQAGADAQLDDNAAQHVGRVLRMQPGQALSLFNGDGQDYRALIASASKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 Q  + + +S ++ +      K +R+DY +QK+ EMG+  I P+ T         
Sbjct: 62  VTVQVEQPTANSSESALEIVLGQTLSKGDRMDYAVQKATEMGVTRIVPLSTERCDVRLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176
                 +   R+  ISAAEQC    +P I P   +   L+ +   + ++V    T     
Sbjct: 122 DREDKRLSHWRSVAISAAEQCGRARVPDILPVMNITEWLEYSQRCDVRLVLHHRTE---- 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L ++A   +VA++IGPEGG  ++E        F+ P++LGPR+LR++TA VAAMAL
Sbjct: 178 --QSLDSLAKPNSVALMIGPEGGLSADEIAQAEKSGFL-PIALGPRVLRTETAPVAAMAL 234

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 235 CQWLWGDF 242


>gi|62129237|gb|AAX66940.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716087|gb|EFZ07658.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 259

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++ F      S N+
Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNFHPRAHASINT 197

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251

Query: 238 QAICGD 243
           Q   GD
Sbjct: 252 QVRFGD 257


>gi|297568502|ref|YP_003689846.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924417|gb|ADH85227.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 242

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 5/243 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           ++R F+D       +   +G   H+L HVLR+  G+ + LF+G+   + + I ++   + 
Sbjct: 1   MRRFFIDPEAIQGREASLTGSDAHHLQHVLRLTPGERVELFDGRGTVYQAAIDHIEPGLT 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHY 122
           R  +   S +   +  +    + +K  ++D ++QK  E+G+ ++RP  +++T        
Sbjct: 61  RLTLLSSSDTPPDRLAIHLGQAMLKGKKMDLVVQKCTELGVRSLRPYTSQHTTTPPPGAE 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R +     + +QC+    P  +PP T   LL +       +   E   +        
Sbjct: 121 KLARWQRIIHESCKQCNQPWPPSCHPPQTFAELLADAADFDLRLICWEEPEAPPLSNIAE 180

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +    +V +LIGPEGG+  EE +      F+  + LG RILR++TA++  +AL+Q I  
Sbjct: 181 QLGAPASVLVLIGPEGGFSREEIDLARQAGFI-VIGLGRRILRAETASIVIIALLQYIFN 239

Query: 243 DWY 245
           D Y
Sbjct: 240 DLY 242


>gi|319427610|gb|ADV55684.1| rRNA base methyltransferase, RsmE [Shewanella putrefaciens 200]
          Length = 243

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I        D   ++  VLRM  G+NI LFNG   ++L++I   GK  
Sbjct: 2   RVPRIYQPQPLAINQLLNLDEDGAAHIGKVLRMGNGENISLFNGDGNDYLAEIVDAGKKH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    +   +S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVKLLSCEANLSESPLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSDRCGVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   +SA EQ     +P I P   L           ++          N 
Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSQVPLIRPAMDLHDWCSEPTSALKLNLHPRAAHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+  H       V +LIGPEGG  +EE     +  F T + LGPR+LR++TA++ A+  +
Sbjct: 182 LDLAHT-----RVRLLIGPEGGLSAEEIAMTETYQF-TDVLLGPRVLRTETASLTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLRFGD 241


>gi|22127196|ref|NP_670619.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis KIM 10]
 gi|45443246|ref|NP_994785.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597516|ref|YP_071707.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806328|ref|YP_650244.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Antiqua]
 gi|108813291|ref|YP_649058.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Nepal516]
 gi|145597888|ref|YP_001161964.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Pestoides
           F]
 gi|149367057|ref|ZP_01889090.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125]
 gi|153949952|ref|YP_001399821.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418368|ref|YP_001607686.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis Angola]
 gi|165924866|ref|ZP_02220698.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937327|ref|ZP_02225891.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010231|ref|ZP_02231129.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212766|ref|ZP_02238801.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399760|ref|ZP_02305278.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421908|ref|ZP_02313661.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426701|ref|ZP_02318454.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470902|ref|ZP_02335606.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           FV-1]
 gi|170023088|ref|YP_001719593.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis YPIII]
 gi|186896639|ref|YP_001873751.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928106|ref|YP_002345981.1| 16S ribosomal RNA methyltransferase RsmE [Yersinia pestis CO92]
 gi|229837626|ref|ZP_04457788.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A]
 gi|229840853|ref|ZP_04461012.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842587|ref|ZP_04462742.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229903754|ref|ZP_04518867.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516]
 gi|270487532|ref|ZP_06204606.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27]
 gi|294502903|ref|YP_003566965.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003]
 gi|21960262|gb|AAM86870.1|AE013933_7 hypothetical protein y3320 [Yersinia pestis KIM 10]
 gi|45438114|gb|AAS63662.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590798|emb|CAH22444.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108776939|gb|ABG19458.1| hypothetical protein YPN_3131 [Yersinia pestis Nepal516]
 gi|108778241|gb|ABG12299.1| hypothetical protein YPA_0331 [Yersinia pestis Antiqua]
 gi|115346717|emb|CAL19600.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209584|gb|ABP38991.1| hypothetical protein YPDSF_0581 [Yersinia pestis Pestoides F]
 gi|149290671|gb|EDM40747.1| hypothetical protein YPE_2335 [Yersinia pestis CA88-4125]
 gi|152961447|gb|ABS48908.1| ribosomal small subunit methyltransferase RsmE [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351183|gb|ABX85131.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           Angola]
 gi|165914801|gb|EDR33414.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923066|gb|EDR40217.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990717|gb|EDR43018.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206058|gb|EDR50538.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960045|gb|EDR56066.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050468|gb|EDR61876.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054304|gb|EDR64123.1| ribosomal small subunit methyltransferase RsmE [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749622|gb|ACA67140.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis
           YPIII]
 gi|186699665|gb|ACC90294.1| protein of unknown function DUF558 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679524|gb|EEO75627.1| hypothetical protein YP516_3558 [Yersinia pestis Nepal516]
 gi|229690897|gb|EEO82951.1| hypothetical protein YPF_0928 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697219|gb|EEO87266.1| hypothetical protein YPH_3204 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229704314|gb|EEO91325.1| hypothetical protein YPS_1552 [Yersinia pestis Pestoides A]
 gi|262360938|gb|ACY57659.1| hypothetical protein YPD4_0750 [Yersinia pestis D106004]
 gi|262364878|gb|ACY61435.1| hypothetical protein YPD8_0745 [Yersinia pestis D182038]
 gi|270336036|gb|EFA46813.1| 16S rRNA methyltransferase RsmE [Yersinia pestis KIM D27]
 gi|294353362|gb|ADE63703.1| hypothetical protein YPZ3_0793 [Yersinia pestis Z176003]
 gi|320013984|gb|ADV97555.1| hypothetical protein YPC_0866 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 243

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   T+   + +  +++  VLRM EG ++ LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLQANTELALTDEAANHVGRVLRMTEGQSLQLFDGSNQIFDAEIIRADKKN 61

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I    E Q   +    ++       +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 62  LIVRLAEGQWEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSARCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   T+P I     L       D + ++        S N+
Sbjct: 122 ERLTKKIQQWQKIAIAACEQCGRNTIPEIRDAMQLADWCAESDDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----SSLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|119383376|ref|YP_914432.1| hypothetical protein Pden_0624 [Paracoccus denitrificans PD1222]
 gi|119373143|gb|ABL68736.1| protein of unknown function DUF558 [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score =  272 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 140/237 (59%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLF+D PL      + + DQ HYL+ V+R   GD IL+FNG+DGEWL++I  + K     
Sbjct: 5   RLFIDHPLAEGQGIELNADQSHYLSSVMRQGAGDEILVFNGQDGEWLARIERIAKRGGAL 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +   Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 65  EALRQTAPQLNPPDLWLVFAPIKKARTDFIVEKAAEMGAARILPVQTDHTNSERIRQDRL 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  LL  WD   +I++ADE        + L  +   
Sbjct: 125 QAHAVEAAEQCGGTHVPEVCDLVPLSRLLDGWDAGRRILWADEALAG--PAQVLSGLPRG 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E++ L ++  VT ++LGPRILR+DTAAVA++AL QA  GDW
Sbjct: 183 P-WAILIGPEGGWSESERKRLSAMDCVTRIALGPRILRADTAAVASLALWQASLGDW 238


>gi|238896476|ref|YP_002921214.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae NTUH-K2044]
 gi|238548796|dbj|BAH65147.1| hypothetical protein KP1_4654 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 268

 Score =  272 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK  
Sbjct: 27  RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 86

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 87  VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 146

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P   LE      D   ++        S N+
Sbjct: 147 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINT 206

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 207 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 260

Query: 238 QAICGD 243
           Q   GD
Sbjct: 261 QVRFGD 266


>gi|113461711|ref|YP_719780.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 129PT]
 gi|112823754|gb|ABI25843.1| 16S rRNA m(3)U-1498 methyltransferase [Haemophilus somnus 129PT]
          Length = 245

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +   + S D  +++  VLRM+ G+ I LF+G +  + + I+   K  
Sbjct: 2   RIPRIYHPTSLENQQTCQLSDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA 61

Query: 66  RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   Q  ++     +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IEVNILSRQLDNRESPLFIHLGQVISRGERMEFTIQKSVELGVNIITPLWSERCGVKLDK 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   ISA EQC    +P I P   L+      D   ++        +  +
Sbjct: 122 DRMEKKIQQWQKIAISACEQCGRNIVPEIRPLMKLQDWCAEQDGTLKLNLHPRAKYTIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L ++        V +LIGPEGG  ++E     +  F T + LG R+LR++TAA++A+  +
Sbjct: 182 LPEI----PPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETAALSAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|294634386|ref|ZP_06712923.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685]
 gi|291092194|gb|EFE24755.1| 16S rRNA methyltransferase RsmE [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL I  +   S D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLSIPGEVNLSDDAANHVGRVLRMGPGHALQLFDGSNRVFDAEIVSADKKS 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++      ++     +       +  ++++ IQKS+E+G+  I P+I+         
Sbjct: 62  VRVRLTAVHEENRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLISERCGVRLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +   I+A EQC   +L  I P  TLE      D   ++        S N+
Sbjct: 122 ERLAKKQQQWQKIAIAACEQCGRNSLALIRPAMTLEAWCAEPDDGLRLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PLSRVRLLIGPEGGLSASEIAMTADYHF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|292487087|ref|YP_003529957.1| hypothetical protein EAMY_0599 [Erwinia amylovora CFBP1430]
 gi|292900528|ref|YP_003539897.1| hypothetical protein EAM_2830 [Erwinia amylovora ATCC 49946]
 gi|291200376|emb|CBJ47504.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291552504|emb|CBA19549.1| UPF0088 protein yggJ [Erwinia amylovora CFBP1430]
 gi|312171190|emb|CBX79449.1| UPF0088 protein yggJ [Erwinia amylovora ATCC BAA-2158]
          Length = 243

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I  +   S +  +++  VLRM  G  + LF+G    + ++I    K  
Sbjct: 2   RIPRIYQPRPLQIGNEIALSEEAANHVGRVLRMSAGQMLELFDGTSLVFAAEIIQADKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  SR  +++S +      +  +  ++++ +QK+VE+G+  I P+ +         
Sbjct: 62  VCVRINASREDSRESPLHLHLGQVMSRGEKMEFTVQKAVELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M + +   I+A EQC    +P +     L+      +   ++        S N+
Sbjct: 122 ERLAKKMQQWQKIAIAACEQCGRNCIPEVRNAMALDAWCAEPEPGLKLNLHPRAKHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        I  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PIERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|84515820|ref|ZP_01003181.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53]
 gi|84510262|gb|EAQ06718.1| hypothetical protein SKA53_14261 [Loktanella vestfoldensis SKA53]
          Length = 244

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 134/238 (56%), Gaps = 6/238 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RL+VD PL +      + DQ HYL  V+R+  GD + L N +DGEW + +   G K    
Sbjct: 10  RLYVDHPLGVGQSVPLNRDQAHYLFGVMRLGAGDVLSLINSRDGEWDAVVEKAGNKGGVL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDR 126
             + Q+R      D+  +F+PI+  R  ++++K+VE+G   I PV T +TQ       D+
Sbjct: 70  ACQAQTRPLQTPPDLWLVFAPIRKERTAFIVEKAVELGAARIIPVQTAFTQAANRIRQDK 129

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           ++ + + A+EQC    +P +     L+ LL +W  + Q++F DE         +L AI  
Sbjct: 130 LQAHAVEASEQCGGTFVPPVDDLAKLDRLLADWPKDRQLMFCDEAAIGAPV--RLPAIPG 187

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E++ L +LPF   +SLGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 188 P--WAILIGPEGGFSPAERDKLRALPFAHAVSLGPRILRADTAAVAALTLWQQALGDW 243


>gi|260767459|ref|ZP_05876396.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii
           CIP 102972]
 gi|260617571|gb|EEX42753.1| ribosomal RNA small subunit methyltransferase E [Vibrio furnissii
           CIP 102972]
 gi|315181239|gb|ADT88153.1| hypothetical protein vfu_A03045 [Vibrio furnissii NCTC 11218]
          Length = 243

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++A VLRM+EG  +L+F+G   E+ + I   GK  
Sbjct: 2   RVPRIYHPHPITHLGPLALSDDAAGHIARVLRMQEGQEVLVFDGSGAEFPAIIHEAGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    +     ++       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VVVDLAERIDTNLESPLNLHLGQVISRGDKMEFTIQKSVELGVNTITPLLSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  TLE          ++        S N+
Sbjct: 122 KRFEKKLQQWQKIAISACEQCGRNVVPDIRPIMTLEAWCAEQTDALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  +EE +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVTKVRLLIGPEGGLSAEEIDMTQQYHFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|288933585|ref|YP_003437644.1| hypothetical protein Kvar_0702 [Klebsiella variicola At-22]
 gi|288888314|gb|ADC56632.1| protein of unknown function DUF558 [Klebsiella variicola At-22]
          Length = 243

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     L I +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK  
Sbjct: 2   RIPRIHHPERLTIGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P   LE      D   ++        S N+
Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|238759323|ref|ZP_04620489.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae
           ATCC 35236]
 gi|238702484|gb|EEP95035.1| Ribosomal RNA small subunit methyltransferase E [Yersinia aldovae
           ATCC 35236]
          Length = 261

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T+   S +  +++  VLRM EG N+ LF+G +  + ++I    K  
Sbjct: 20  RIPRIYHPQPLQANTELALSDEAANHVGRVLRMMEGQNLQLFDGSNQVFTAEIIRADKKN 79

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +   + ++S +      +  +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 80  LIVRIAEGLLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 139

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I     L       D + ++        S N+
Sbjct: 140 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLSEWCAEQDDSLKLNLHPRANNSINT 199

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      A +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 200 LS-----ASLNKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 253

Query: 238 QAICGD 243
           Q   GD
Sbjct: 254 QVRFGD 259


>gi|206576729|ref|YP_002236603.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella
           pneumoniae 342]
 gi|290511348|ref|ZP_06550717.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp.
           1_1_55]
 gi|206565787|gb|ACI07563.1| ribosomal RNA small subunit methyltransferase RsmE [Klebsiella
           pneumoniae 342]
 gi|289776341|gb|EFD84340.1| ribosomal RNA small subunit methyltransferase E [Klebsiella sp.
           1_1_55]
          Length = 243

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK  
Sbjct: 2   RIPRIHHPERLTVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P   LE      D   ++        S N+
Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEEWCAEQDSGMKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|255264688|ref|ZP_05344030.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255107023|gb|EET49697.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 239

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+VD  L        + +Q HYL  V+R    + + LFNG+DGEW +++   GK     
Sbjct: 6   RLYVDHDLGAGQSVLLTKEQAHYLFGVMRKGVDEVLSLFNGRDGEWDARVVEAGKRKGIL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             E QS+      DV  +F+PIK  R D++++K+ EMG   I PV T +T +     +++
Sbjct: 66  VCEAQSKPLQLPPDVWLMFAPIKKARTDFIVEKATEMGAARIMPVQTEFTNSDRVRHEKL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             + + AAEQC    +P + P   L  +L  W  + +++F DE        + + A A  
Sbjct: 126 VAHAVEAAEQCGGTYVPPVDPLAKLTKVLAAWPEDRKLLFCDEALVG---AQAVFAEASH 182

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+E L + P+VT  SLGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 183 DKWAILIGPEGGFSQAERELLGAKPYVTQASLGPRILRADTAAVAALTLWQTTQGDW 239


>gi|56415032|ref|YP_152107.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363961|ref|YP_002143598.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|229307087|ref|YP_001590023.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|229597264|ref|YP_002047082.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|56129289|gb|AAV78795.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095438|emb|CAR60997.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 243

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|121602013|ref|YP_988622.1| hypothetical protein BARBAKC583_0300 [Bartonella bacilliformis
           KC583]
 gi|120614190|gb|ABM44791.1| conserved hypothetical protein TIGR00046 [Bartonella bacilliformis
           KC583]
          Length = 247

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 143/226 (63%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +   +RLF+  PL +  +    G Q  YL HVLRM+EG  ILLFNG DGEWL+++  
Sbjct: 1   MRANYKFQRLFIQQPLVLNAEVIIEGSQASYLIHVLRMREGARILLFNGCDGEWLAELIT 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++ +Q R QT +SD+ Y F+PIK+ RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKKIVVVRIIHQERVQTVRSDLVYCFAPIKSARLDYMVQKAVEMGVSVLQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+L    P  +LE LL +WD    + F DE+    N L 
Sbjct: 121 TRINMARIEANIIEASEQCGILSLSECAPTVSLEALLTSWDEARPLFFCDESHEFHNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L     +P V +LIGPEGG+  EE+  L   PFV P+SLGPRILR
Sbjct: 181 LLKKYRAMP-VGVLIGPEGGFSEEERILLKKYPFVVPISLGPRILR 225


>gi|194442934|ref|YP_002042353.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194737195|ref|YP_002116042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195873572|ref|ZP_02697636.2| protein YggJ [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197300804|ref|ZP_02661220.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204928270|ref|ZP_03219470.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205357183|ref|ZP_02345767.2| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205359187|ref|ZP_02667829.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205360780|ref|ZP_02686433.2| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224584887|ref|YP_002638686.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238909892|ref|ZP_04653729.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161365422|gb|ABX69190.1| hypothetical protein SPAB_03859 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401597|gb|ACF61819.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408317|gb|ACF68536.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194712697|gb|ACF91918.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633273|gb|EDX51687.1| protein YggJ [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197290907|gb|EDY30261.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204322592|gb|EDZ07789.1| protein YggJ [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205323264|gb|EDZ11103.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205338220|gb|EDZ24984.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205347043|gb|EDZ33674.1| protein YggJ [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224469415|gb|ACN47245.1| hypothetical protein SPC_3159 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322613491|gb|EFY10432.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621083|gb|EFY17941.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624147|gb|EFY20981.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628114|gb|EFY24903.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633233|gb|EFY29975.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636189|gb|EFY32897.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639527|gb|EFY36215.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647540|gb|EFY44029.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648724|gb|EFY45171.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653779|gb|EFY50105.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657885|gb|EFY54153.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663988|gb|EFY60187.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669001|gb|EFY65152.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673005|gb|EFY69112.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678004|gb|EFY74067.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681180|gb|EFY77213.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687890|gb|EFY83857.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194914|gb|EFZ80101.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196665|gb|EFZ81813.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202635|gb|EFZ87675.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207878|gb|EFZ92824.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212570|gb|EFZ97387.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214947|gb|EFZ99695.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222677|gb|EGA07042.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225420|gb|EGA09652.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230565|gb|EGA14683.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235084|gb|EGA19170.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239123|gb|EGA23173.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244519|gb|EGA28525.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247134|gb|EGA31100.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253383|gb|EGA37212.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256310|gb|EGA40046.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262514|gb|EGA46070.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267390|gb|EGA50874.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269206|gb|EGA52661.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 259

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251

Query: 238 QAICGD 243
           Q   GD
Sbjct: 252 QVRFGD 257


>gi|168826710|gb|ACA32081.1| protein of unknown function DUF558 [Haemophilus somnus 2336]
          Length = 272

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 13/248 (5%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +  + R++    L  +   + S D  +++  VLRM+ G+ I LF+G +  + + I+   K
Sbjct: 27  NMRIPRIYHPTSLENQQTCQLSDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNK 86

Query: 64  SIRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
                     Q  ++     +       +  R+++ IQKSVE+G+  I P+ +       
Sbjct: 87  KAIEVNILSRQLDNRESPLFIHLGQVISRGERMEFTIQKSVELGVNIITPLWSERCGVKL 146

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   + + +   ISA EQC    +P I P   L+      D   ++        + 
Sbjct: 147 DKDRMEKKIQQWQKIAISACEQCGRNIVPEIRPLMKLQDWCAEQDGTLKLNLHPRAKYTI 206

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +L ++        V +LIGPEGG  ++E     +  F T + LG R+LR++T A++A+ 
Sbjct: 207 RTLPEI----PPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAIT 261

Query: 236 LVQAICGD 243
            +Q   GD
Sbjct: 262 ALQVCFGD 269


>gi|161353586|ref|NP_462010.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|267995259|gb|ACY90144.1| hypothetical protein STM14_3738 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
          Length = 243

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|126740599|ref|ZP_01756286.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6]
 gi|126718400|gb|EBA15115.1| hypothetical protein RSK20926_04507 [Roseobacter sp. SK209-2-6]
          Length = 261

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/252 (37%), Positives = 131/252 (51%), Gaps = 16/252 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL +        DQ HYL  V+R   G ++ LFNG+DGEW ++IS  GK     
Sbjct: 10  RLYVEHPLGVGQSIPLEKDQAHYLFGVMRQALGGHVALFNGRDGEWQAEISEAGKRGGTL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               QS+      D+  IF+PIK  R D++++K+ EMG   I PV T YT +     DR+
Sbjct: 70  TCIEQSKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGAAKILPVGTEYTNSERIRQDRL 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L  LL +W    Q++F DE    +     L      
Sbjct: 130 QAHAVEAAEQCGGTYVPEVCDLQKLSRLLDDWPAKRQLMFCDEAEVGQQRFLDLTQGGGT 189

Query: 188 ---------------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                             AILIGPEGG+  +E++ LH++     +SLGPRILR+DTAAVA
Sbjct: 190 GADRSASEPVPGAVSQPWAILIGPEGGFSDKERKRLHAMEQAHVVSLGPRILRADTAAVA 249

Query: 233 AMALVQAICGDW 244
           AM + Q   GDW
Sbjct: 250 AMTVWQQTLGDW 261


>gi|329998571|ref|ZP_08303168.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3]
 gi|328538642|gb|EGF64741.1| 16S rRNA methyltransferase RsmE [Klebsiella sp. MS 92-3]
          Length = 243

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK  
Sbjct: 2   RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P   LE      D   ++        S N+
Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|197263143|ref|ZP_03163217.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200388493|ref|ZP_03215105.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205357558|ref|ZP_02571479.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16421647|gb|AAL21969.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197241398|gb|EDY24018.1| protein YggJ [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199605591|gb|EDZ04136.1| protein YggJ [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205331209|gb|EDZ17973.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261248225|emb|CBG26062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301159649|emb|CBW19168.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914116|dbj|BAJ38090.1| 16S rRNA methyltransferase RsmE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225767|gb|EFX50821.1| Ribosomal RNA small subunit methyltransferase E [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131450|gb|ADX18880.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989961|gb|AEF08944.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 259

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251

Query: 238 QAICGD 243
           Q   GD
Sbjct: 252 QVRFGD 257


>gi|238785646|ref|ZP_04629623.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           bercovieri ATCC 43970]
 gi|238713425|gb|EEQ05460.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           bercovieri ATCC 43970]
          Length = 253

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   ++   S +  +++  VLRM EG ++ LF+G +  + +KI    K  
Sbjct: 12  RIPRIYHPQPLQANSELALSDEAANHVGRVLRMAEGQSLQLFDGSNQVFDAKIIRADKKS 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 + + + ++S +      +  +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 72  LVVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDG 131

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   T+P I     L       D + ++        S N+
Sbjct: 132 ERLAKKIQQWQKIAIAACEQCGRNTIPEIRAAMQLADWCAEQDDSLKLNLHPRASNSINT 191

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 192 LP-----PSLNKVRLLIGPEGGLSADEITMTSRLGF-TDILLGPRVLRTETTALTAITAL 245

Query: 238 QAICGD 243
           Q   GD
Sbjct: 246 QVRFGD 251


>gi|125973834|ref|YP_001037744.1| hypothetical protein Cthe_1319 [Clostridium thermocellum ATCC
           27405]
 gi|281417994|ref|ZP_06249014.1| protein of unknown function DUF558 [Clostridium thermocellum JW20]
 gi|125714059|gb|ABN52551.1| protein of unknown function DUF558 [Clostridium thermocellum ATCC
           27405]
 gi|281409396|gb|EFB39654.1| protein of unknown function DUF558 [Clostridium thermocellum JW20]
 gi|316939970|gb|ADU74004.1| protein of unknown function DUF558 [Clostridium thermocellum DSM
           1313]
          Length = 247

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 123/245 (50%), Gaps = 9/245 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV            SG+ ++++  VLR+ +GD + + +G+  ++L +I  +  ++ 
Sbjct: 1   MPRFFVRKSDIYGDFINISGEDFNHIKKVLRLGKGDKVTVCDGEGTDYLVEIEKIEDAVI 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE    +      V       K++++DY+IQK+VE+G+  I PVIT  T      +
Sbjct: 61  NTRIVEAMKNATEPPLKVTLFQGLPKSDKMDYIIQKAVELGINEIVPVITERTVVKMDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +     +R    ++ AA+QC+   +P +  P + +  L N   +   +   E        
Sbjct: 121 SGSKKYERWNRISMEAAKQCNRGIIPKVGIPLSFKEALDNAKGSSLALIPYEKETGIKLK 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + + +  V++ IGPEGG+   E ET  S   + P++LGPRILR++TA +A ++++ 
Sbjct: 181 EVLSSSSSVEKVSVFIGPEGGFTETEIETAVSCG-ICPVTLGPRILRTETAGIAVLSILM 239

Query: 239 AICGD 243
              GD
Sbjct: 240 YELGD 244


>gi|327395101|dbj|BAK12523.1| hypothetical UPF0088 protein YggJ [Pantoea ananatis AJ13355]
          Length = 243

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ + ++     D   ++  VLRM  G ++ LF+G +  + ++I++V K  
Sbjct: 2   RIPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKKR 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S+   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ++A EQC    +P I P   LE      +   ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSADEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|330886230|gb|EGH20131.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 239

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+G I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVGEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +     ++A LIGPEGG +  E +   +  F     LGPR+LR++TA   A+++ 
Sbjct: 174 AEPLTSHDKPASLAFLIGPEGGLNDAEVDQAQAAGF-HAARLGPRVLRTETAPAVALSVA 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QQLWGDF 239


>gi|300024089|ref|YP_003756700.1| hypothetical protein Hden_2583 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525910|gb|ADJ24379.1| protein of unknown function DUF558 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 248

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRF 67
           RLF+   L      + +  Q HYL +VLR++ G  +L+FNG+DGEW +  I    ++   
Sbjct: 10  RLFIADDLAAGVSVELAQQQAHYLTNVLRLRPGAKLLVFNGRDGEWQASLIESRKRTTVL 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +E Q+R Q +  D+ Y+F+P+K +RLDYM+QK+ EMG+  +RPVIT  T     N +R+
Sbjct: 70  GIEEQTRPQEQGPDIDYLFAPLKRSRLDYMVQKATEMGVRRLRPVITERTIAERVNSERM 129

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQC IL +P + PP +LE  L  WD    +++ DE   + + +  L  +   
Sbjct: 130 LANAIEAAEQCGILRVPEVEPPVSLETALAAWDPARALIYCDEHETAADPIATLRKVPAG 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P VA+LIGPEGG+ + E+  L +  +V PL LGPRI+R+DTAAVAA+ LV A+ GDW
Sbjct: 190 P-VAVLIGPEGGFSNGERSRLLANSYVVPLPLGPRIMRADTAAVAALTLVNAVLGDW 245


>gi|262042596|ref|ZP_06015752.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040030|gb|EEW41145.1| 16S rRNA methyltransferase RsmE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK  
Sbjct: 2   RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P   LE      D   ++        S N+
Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLETWCAEQDSGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|237816954|ref|ZP_04595946.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|297249441|ref|ZP_06933142.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus
           bv. 5 str. B3196]
 gi|237787767|gb|EEP61983.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|297173310|gb|EFH32674.1| ribosomal RNA small subunit methyltransferase E [Brucella abortus
           bv. 5 str. B3196]
          Length = 285

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 38  MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 98  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR              
Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMA---- 272

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 273 ------LVQAVLGDW 281


>gi|152971897|ref|YP_001337006.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956746|gb|ABR78776.1| hypothetical protein KPN_03379 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     L + +Q   S D  +++  VLRM  G ++ LF+G +  + + I+  GK  
Sbjct: 2   RIPRIHHPERLIVGSQIALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VTAEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ     +P I P   LE      D   ++        S N+
Sbjct: 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTAQYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|301154799|emb|CBW14262.1| predicted protein [Haemophilus parainfluenzae T3T1]
          Length = 244

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  ++  + S D  +++  VLRM EG+ I LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPKSLKNQSTCQLSEDAANHVGRVLRMTEGEQIELFDGSNHIYPAKIIEASKKA 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       K+S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPLWSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGALKLNLHPRAQYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG   +E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPSI----PKEGVRLLIGSEGGLSPQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|77464587|ref|YP_354091.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           2.4.1]
 gi|77389005|gb|ABA80190.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 257

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 14/250 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL        + DQ HYL  V+R+  G  + LFNG+DGEW ++++  GK     
Sbjct: 7   RLYVEQPLGPGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+       D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  LCKDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177
           + + + AAEQC    +P +   T LE LL +W  + +I++ DE+     +          
Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGLLEAAGGFE 186

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E+          AILIGPEGG+  EE+  L  +  V P+SLGPRILR+DTAAVAA+
Sbjct: 187 ARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVAAL 246

Query: 235 ALVQAICGDW 244
            L Q++ GDW
Sbjct: 247 TLWQSVLGDW 256


>gi|291618768|ref|YP_003521510.1| YggJ [Pantoea ananatis LMG 20103]
 gi|291153798|gb|ADD78382.1| YggJ [Pantoea ananatis LMG 20103]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 115/246 (46%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ + ++     D   ++  VLRM  G ++ LF+G +  + ++I++V K  
Sbjct: 2   RIPRIYHSQPVHVGSEITLDEDASGHVGRVLRMTSGQHVELFDGSNLTFAAEITHVDKKR 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S+   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VKVSITASQEDDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ++A EQC    +P I P   LE      +   ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAVAACEQCGRNRVPEIRPAMALEAWCSEAESGLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PVERVRLLIGPEGGLSTDEIAMTAQHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|148558128|ref|YP_001257708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ovis ATCC 25840]
 gi|225629236|ref|ZP_03787269.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|148369413|gb|ABQ62285.1| conserved hypothetical protein TIGR00046 [Brucella ovis ATCC 25840]
 gi|225615732|gb|EEH12781.1| conserved hypothetical protein [Brucella ceti str. Cudo]
          Length = 285

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 38  MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 98  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 157

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 158 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 272

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 273 ------LVQAVLGDW 281


>gi|90415442|ref|ZP_01223376.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium
           HTCC2207]
 gi|90332765|gb|EAS47935.1| hypothetical protein GB2207_09001 [marine gamma proteobacterium
           HTCC2207]
          Length = 245

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 18/249 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F D PL        SG    +L+  LRM  G  I LFNG  GE+ + ++   KS 
Sbjct: 2   RIPRIFTDQPLSSGANLALSGSAARHLSSALRMSAGQEITLFNGLGGEFSATLTRATKSQ 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   + +++   +    ++    +  +  R+D+++QK+ E+G+  I P+ +  T      
Sbjct: 62  VDVSIGDFRDIDRESPLNLHLAIAVSRGERMDWIVQKATELGVSEITPLFSERTEVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGS 174
           +     +   +  +ISA EQC    +P I P  TL+  L          ++V    +  S
Sbjct: 122 ERLEKKLRHWQQVSISACEQCQRNLVPSINPALTLDQWLSQDTGNAEQLKLVLHHRSDKS 181

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L       +  +L+GPEGG    E        F   L+LGPR++R++TA +AA+
Sbjct: 182 ------LAQHQPPKSACLLVGPEGGLSDNEISRAMDNGFA-ALTLGPRVMRTETAPLAAI 234

Query: 235 ALVQAICGD 243
           +++Q++ GD
Sbjct: 235 SIMQSVWGD 243


>gi|326410911|gb|ADZ67975.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis M28]
 gi|326554202|gb|ADZ88841.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis
           M5-90]
          Length = 285

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 38  MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 97

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 98  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 157

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 158 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 217

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 218 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 272

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 273 ------LVQAVLGDW 281


>gi|109899639|ref|YP_662894.1| hypothetical protein Patl_3334 [Pseudoalteromonas atlantica T6c]
 gi|109701920|gb|ABG41840.1| 16S rRNA m(3)U-1498 methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 242

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++    L    +   + D  +++A+VLR K G  ++LFNG   E+  +   V K  
Sbjct: 2   RISRIYHPDTLHPDQELSLTPDASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRK 61

Query: 65  IRFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R +++ + S S      +       + +R+D+++QKSVE+G+  I P+IT         
Sbjct: 62  VRVQIDAKLSMSLESPLSIHLGQGVSRGDRMDWVLQKSVELGVTEITPLITERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q       + +   I+A EQC    LP ++ P   +  +       ++        S   
Sbjct: 122 QRWQKKHAQWQKIIIAACEQCGRNVLPVLHMPMDFQSWVNQSTQALRLALHPRAEKSFR- 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               H       V +LIGPEGG+  +E        F T + LGPR+LR++TAA+ A++ +
Sbjct: 181 ----HTSVGKDGVRLLIGPEGGFSDQELYQTEQGGFQT-VQLGPRVLRTETAAITAISAL 235

Query: 238 QAICGD 243
           QAI GD
Sbjct: 236 QAIYGD 241


>gi|261867348|ref|YP_003255270.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412680|gb|ACX82051.1| hypothetical protein D11S_0649 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 244

 Score =  271 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL   T    S D  +++  VLRM+ GD + LF+G +  + + I+ V K  
Sbjct: 2   RVPRIYHPIPLNQHTTCALSEDGANHVGRVLRMRAGDQLELFDGSNHIYQAVITAVAKKS 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +  Q   +     +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVDILSRQFDDRESPLAIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      +   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAEPNDALKLNLHPRARYSIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L ++ A      V +LIG EGG   +E        FV  + LG R+LR++TAA+AA+  +
Sbjct: 182 LPEIPAA----GVRLLIGSEGGLSPQEIAQTEQQGFV-DVLLGKRVLRTETAAMAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|88859066|ref|ZP_01133707.1| putative RNA methyltransferase with a deep trefoil knot
           [Pseudoalteromonas tunicata D2]
 gi|88819292|gb|EAR29106.1| putative RNA methyltransferase with a deep trefoil knot
           [Pseudoalteromonas tunicata D2]
          Length = 243

 Score =  271 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            +  ++    + I    +   D   ++  VLRM  GD + LFNG+ G++L++++ V K  
Sbjct: 2   RIPHIYHPGSIEIGQILQLDDDAAGHIGRVLRMSIGDKVCLFNGQGGQFLAELTEVSKKG 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++E ++         +       + +++D+ IQKSVE+G+  I P+ T         
Sbjct: 62  VNVQIESFEEHDVESPLKIHLGQGISRGDKMDFTIQKSVELGVTEITPLFTERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+AAEQ     +  I+PP  LE  L       ++        S  +
Sbjct: 122 DRLEKKHQQWQKIAIAAAEQSGRNFVTVIHPPIKLEQWLSQQSDELKLTLHPRAEHSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + K         +  ++GPEGG+   E     +  F+  + LGPRILR++TAA+  ++ +
Sbjct: 182 ITK-----PTEGLRFIVGPEGGFTDAEMLMTKNSGFI-DIRLGPRILRTETAALTVLSAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLEFGD 241


>gi|238763255|ref|ZP_04624220.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           kristensenii ATCC 33638]
 gi|238698528|gb|EEP91280.1| Ribosomal RNA small subunit methyltransferase E [Yersinia
           kristensenii ATCC 33638]
          Length = 243

 Score =  271 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   T+   S +  +++  VLRM EG ++ LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLQANTELALSDEAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIRVDKKN 61

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I    E Q   +    ++       +  ++++ +QKS+E+G+  I P+ +         
Sbjct: 62  LIVRLAEGQLEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVDVITPLFSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I     L         + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNKIPEIREAMQLADWCAEQGDSLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L      + +  V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LP-----SSLSKVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|319408122|emb|CBI81775.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 247

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/226 (46%), Positives = 146/226 (64%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+++   +RLF+  PL +  + +  G Q  YL HVLRMKEG  ILLFNG+DGEWL+KI+ 
Sbjct: 1   MRVNYKFQRLFIQQPLSLNREIEIEGAQVSYLVHVLRMKEGAQILLFNGQDGEWLAKITA 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++ +Q+R QT  SD+ Y F+P+K  RLDYM+QK VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKKFVVVQLIHQTRPQTTCSDLIYCFAPLKHARLDYMVQKVVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +  NM R++   I AAEQC IL+LP   P  +L+ LL +WD    + F DE+   +N L 
Sbjct: 121 SRINMARIKANIIEAAEQCGILSLPECLPAVSLKTLLAHWDKTHSLFFCDESHEIQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L     +P + +LIGPEGG+  EE+  L    FV  +SLGPRILR
Sbjct: 181 LLKKHGTVP-LGVLIGPEGGFSEEEQVLLRKHSFVISISLGPRILR 225


>gi|229007176|ref|NP_353680.3| hypothetical protein Atu0657 [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 151/226 (66%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLF++  L      +A+G+Q++YLA+VLRM +G  ILLFNG+DGEW +K+S+
Sbjct: 1   MRANFRMQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSF 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q+R Q   +++ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKKISLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
             +N +++R   I AAEQC IL+LP +  P  L+ +L+ W  + +I++ DE    +N L 
Sbjct: 121 KIHNSEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L A+     +A+L+GPEGG+  EE+  L SL FVTP+ LGPRILR
Sbjct: 181 ILQAVKE-RKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILR 225


>gi|149202038|ref|ZP_01879011.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035]
 gi|149144136|gb|EDM32167.1| hypothetical protein RTM1035_11963 [Roseovarius sp. TM1035]
          Length = 243

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/237 (37%), Positives = 129/237 (54%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL        +  Q HYL  V+R   GD +LLF+G+ GEW + +   GK     
Sbjct: 7   RLYVEHPLGEGQTIPLTQPQAHYLFGVMRQGVGDAVLLFDGRHGEWRADVIEAGKRGGVL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T       DR+
Sbjct: 67  QVAEQTAPQRDPPDLWLLFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNAERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ +L +W  + Q++F DE      +      +   
Sbjct: 127 QAHAVEAAEQCGGTFVPEVGDLHRLDRMLADWPKDRQLMFCDEGLAGH-AATLAGDLPRG 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              AILIGPEGG+   E+  L +LP    +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 186 APWAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQRALGDW 242


>gi|117617899|ref|YP_857627.1| hypothetical protein AHA_3127 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559306|gb|ABK36254.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 243

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L +      S D  +++  VLRM+ G  + LFNG   ++ + I+ VGK  
Sbjct: 2   RIPRIYEPAALQVGQTLALSEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKS 61

Query: 66  RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +  + S      +       + +++D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVTIDRCDTHSVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERCGVKLPA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                  ++ +   ISA EQC   T+P +  P  L+  L    +  ++        S N+
Sbjct: 122 DRLEKKREQWQKVVISACEQCGRNTVPEVRMPMELDAWLAEETNELKLNLHPRAPYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           V +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPI-----PEHGVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QCRFGD 241


>gi|157372259|ref|YP_001480248.1| hypothetical protein Spro_4025 [Serratia proteamaculans 568]
 gi|157324023|gb|ABV43120.1| protein of unknown function DUF558 [Serratia proteamaculans 568]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL    +   S D  +++  VLRM  G  + LF+G +  + + I+ V K  
Sbjct: 2   RIPRIYHPQPLIDHAEIFLSEDAANHIGRVLRMNAGQALQLFDGSNQVFDAVIAQVDKKS 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++   Q   +    ++       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VQVQLSAGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPLFSERCGVALSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I     LE      D + ++        S N+
Sbjct: 122 ERLAKKIQQWQKIAIAACEQCGRNRIPEIREAMQLEAWCAEQDGSLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        + NV +LIGPEGG  + E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVENVRLLIGPEGGLSTGEIAMTTGHGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|161936292|ref|YP_131254.2| 16S ribosomal RNA methyltransferase RsmE [Photobacterium profundum
           SS9]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  + +   S D  +++  V+RM+ G  +LLF+G D E+ + IS   K  
Sbjct: 2   RIPRIYHPELLPSQGKVMLSDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK- 60

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +V+ Q R++       ++       +  ++++ IQKSVE+G+  I P+I+        
Sbjct: 61  NVEVDIQCRNENSIESPLNIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERCGVKLN 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   ++A EQC    +P I P   LE          ++        S N
Sbjct: 121 AERFEKKLSQWQKIVVAACEQCGRNVIPEIRPVMKLEDWCAEEYDGLKLNLHPRANYSIN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +      +  V +LIGPEGG  +EE        F   + LGPR+LR++T A+ A+  
Sbjct: 181 TLPE-----PVTKVRLLIGPEGGLSAEEISMTEQYKFDE-ILLGPRVLRTETTAMTAITA 234

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 235 LQVRFGD 241


>gi|269137637|ref|YP_003294337.1| hypothetical protein ETAE_0279 [Edwardsiella tarda EIB202]
 gi|267983297|gb|ACY83126.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
 gi|304557702|gb|ADM40366.1| Ribosomal RNA small subunit methyltransferase E [Edwardsiella tarda
           FL6-60]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL I  +     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPQPLSIPGEVSLCDDAANHVGRVLRMGPGQALQLFDGSNRVFDAEIISADKKS 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++ + Q   +     +       +  ++++ IQKS+E+G+  I P+I+         
Sbjct: 62  VRVRLNHVQEADRESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLISERCGVRLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERMAKKQQQWQKIAIAACEQCGRNRIPQIRPAMDLEAWCAEEDDCLRLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPQ-----PLTRVRLLIGPEGGLSAAEIAMTADYRF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|116250629|ref|YP_766467.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255277|emb|CAK06352.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 245

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 147/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ DQ++YL +VLRM+EG  ILLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLSSGAVVEANADQFNYLGNVLRMEEGAEILLFNGRDGEWKATLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q +  D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC IL +P +  P  L  LL +W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGILGIPDVAEPVRLLDLLDHWPSERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225


>gi|330721278|gb|EGG99366.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC2047]
          Length = 241

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F+D PL    Q +   +  HYL  VLR+     + +FNG+ GE+ ++I    K+ 
Sbjct: 2   RIPRIFIDLPLNEHQQVELPRETSHYLNRVLRLPVDAQLRVFNGQGGEYQAQICAANKNA 61

Query: 66  RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  + +   +    +    +  K +R+D+++QK+ E+G+  I  + +  T      
Sbjct: 62  VSLAIGAFSAEDNSSPLHIHLGIALSKGDRMDFVVQKATELGIKEISLLYSERTEVKLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   +   ISA EQC    +P I+ PT L   L+      +++        +  
Sbjct: 122 EREEKRLQHWQKVAISACEQCASNHVPTIHAPTPLNQWLEERHETVKLI-------MQPG 174

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++     +   VA+L+GPEGG+   E    +   F   LSLGPRILR++TA + A++++
Sbjct: 175 TDQPFKQDNPGKVALLVGPEGGFSESEVNAANQAGFNN-LSLGPRILRTETAPLVAISIL 233

Query: 238 QAICGD 243
           Q   GD
Sbjct: 234 QHHWGD 239


>gi|167622641|ref|YP_001672935.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella halifaxensis
           HAW-EB4]
 gi|167352663|gb|ABZ75276.1| protein of unknown function DUF558 [Shewanella halifaxensis
           HAW-EB4]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ +  L I        +   ++  VLRM  G+ + LFNG   ++L++I    K  
Sbjct: 2   RVPRIYQESSLVIGQAVALDDEAAGHVGRVLRMSVGEQVSLFNGDGNDYLAEIISASKKN 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     + ++    +       + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVKVLSCEANNSESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   +SA EQ     +P I P   L           ++          N 
Sbjct: 122 ERLEKKIQQWQKIVVSACEQSGRSVVPVIRPAMQLSDWCAEPSDAVKLNLHPRASHGVNG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           V ++IGPEGG  + E        F T + LGPR+LR++TAA+  ++ +
Sbjct: 182 LTL-----PNNRVRLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|33152802|ref|NP_874155.1| hypothetical protein HD1793 [Haemophilus ducreyi 35000HP]
 gi|33149026|gb|AAP96544.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 243

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL  +T    S D  +++  VLRM  G+ I+LF+G +  + + +  V K  
Sbjct: 2   RIPRIYHPEPLKNQTSCSLSEDATNHIGRVLRMNVGEKIILFDGSNHIFHAVLETVQKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IQVKILHSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKIITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC+   +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCERNQVPQIRPIMKLTDWCKEQDEMLKLNLHPRAKYTIRQ 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L ++        V +LIG EGG  +EE     +  F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPQI----PTAGVRLLIGSEGGLSAEEIAMTENQGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|163749088|ref|ZP_02156338.1| hypothetical protein KT99_19644 [Shewanella benthica KT99]
 gi|161331158|gb|EDQ02047.1| hypothetical protein KT99_19644 [Shewanella benthica KT99]
          Length = 242

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ D PL I        +   ++  VLRM  G+ I LFNG D ++L++I    K  
Sbjct: 2   RIPRIYQDSPLVIGDSLALHDEAASHIGRVLRMTPGEQISLFNGSDHDYLAEIISASKKN 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I  KV    + +      +       + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  ISVKVLSSNTNASESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   ++A EQ     +P I P  +LE        + ++            
Sbjct: 122 DRLEKKRQQWQKIVVAACEQSGRSRVPEIRPAMSLEAWCGEPTDSLKLNLHPRAAHGIGG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG    E        F T + LGPR+LR++TAA+ A++ +
Sbjct: 182 LPL-----EVAKVRLLIGPEGGLSDTEILQTEQDEF-TDILLGPRVLRTETAALTAISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|194472615|ref|ZP_03078599.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197248239|ref|YP_002148008.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|198245476|ref|YP_002217069.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205358823|ref|ZP_02659413.2| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205359716|ref|ZP_02831876.2| protein YggJ [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207858355|ref|YP_002245006.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|194458979|gb|EDX47818.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197211942|gb|ACH49339.1| protein YggJ [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197939992|gb|ACH77325.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205331705|gb|EDZ18469.1| protein YggJ [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205343320|gb|EDZ30084.1| protein YggJ [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206710158|emb|CAR34514.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|320087526|emb|CBY97291.1| Ribosomal RNA small subunit methyltransferase E 16S rRNA m3U1498
           methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|326624841|gb|EGE31186.1| protein YggJ [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 259

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251

Query: 238 QAICGD 243
           Q   GD
Sbjct: 252 QVRFGD 257


>gi|223042063|ref|ZP_03612239.1| hypothetical protein AM202_0654 [Actinobacillus minor 202]
 gi|223017138|gb|EEF15574.1| hypothetical protein AM202_0654 [Actinobacillus minor 202]
          Length = 243

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL  KT    S D  +++  VLRM  G+ I LF+G +  + + +  V K  
Sbjct: 2   RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQITLFDGSNHVFHATLQAVEKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG   EE        F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPNMPAA----GVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|163803743|ref|ZP_02197601.1| hypothetical protein 1103602000580_AND4_13698 [Vibrio sp. AND4]
 gi|159172462|gb|EDP57330.1| hypothetical protein AND4_13698 [Vibrio sp. AND4]
          Length = 243

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +          D   ++  VLRMKEG ++LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPETIQQLGTIVVREDAASHIGRVLRMKEGQDVLLFDGSGAEFPAVISEVSKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +    + +S +   F  +  + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VLVELSERTENSIESPLDLHFGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE   +      ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNIVPEIRPIMSLEAWCQEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG    E +      F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVKKVRLLIGPEGGLSCSEIDMTREYQFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|330501385|ref|YP_004378254.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
 gi|328915671|gb|AEB56502.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
          Length = 239

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 17/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F+D PL +    +    Q HY+  VLR   GD + LF+G   E+L ++  VGK  
Sbjct: 2   RLSRFFIDAPLSLGQH-ELPEAQAHYIGRVLRHAVGDAVQLFDGSGQEYLGELIEVGKKS 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++ E  +        +       +  R+D+ IQK+ E+G   I P+++         
Sbjct: 61  VRVELRESIAGLAESPLRIHLGQGLSRGERMDWAIQKATELGASEITPIVSTRCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     M   R   ISA EQC    LP I+ P  L+  L+  + + ++V           
Sbjct: 121 ERADKRMAHWRQVAISACEQCGRSVLPLIHAPLELDAWLQQIEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E     A    +A LIGPEGG    E +      F     LGPR+LR++TA V A+++ 
Sbjct: 174 AEPWVGHAPPRALAFLIGPEGGLSDAEVDQAKGAGF-HAARLGPRVLRTETAPVVALSVA 232

Query: 238 QAICGD 243
           Q + GD
Sbjct: 233 QQLWGD 238


>gi|229220845|ref|YP_223253.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 1
           str. 9-941]
 gi|229358031|ref|YP_418671.2| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis
           biovar Abortus 2308]
 gi|229597252|ref|YP_001932396.2| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus S19]
 gi|254690902|ref|ZP_05154156.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 6
           str. 870]
 gi|254695788|ref|ZP_05157616.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 3
           str. Tulya]
 gi|254698683|ref|ZP_05160511.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732130|ref|ZP_05190708.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 4
           str. 292]
 gi|256256087|ref|ZP_05461623.1| 16S ribosomal RNA methyltransferase RsmE [Brucella abortus bv. 9
           str. C68]
 gi|260544638|ref|ZP_05820459.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260097909|gb|EEW81783.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
          Length = 248

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR              
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|146312989|ref|YP_001178063.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter sp. 638]
 gi|145319865|gb|ABP62012.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter sp. 638]
          Length = 243

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +   ++   S D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPELITAGSEIALSDDAANHVGRVLRMGAGQAVQLFDGSNQVFDAEITRADKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VQVSILRGEVDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I PP  LE      +   ++        S N+
Sbjct: 122 ERLNKKIQQWQKIAIAACEQCGRNRIPEIRPPMDLEAWCAEEESGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|323493586|ref|ZP_08098707.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG
           20546]
 gi|323312109|gb|EGA65252.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio brasiliensis LMG
           20546]
          Length = 243

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +        S +   ++  VLRMKE   +LLF+G   E+ + IS V K  
Sbjct: 2   RIPRIYHPETITQLGSLMLSEEAAGHVGRVLRMKEEQQVLLFDGSGAEFPATISEVSKKS 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VEVNVIERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDH 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNTVPEIRPIMQLEEWCGEEYDGLKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE     +  F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEKVRLLIGPEGGLSAEEISMTENYKFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|75676748|ref|YP_319169.1| hypothetical protein Nwi_2564 [Nitrobacter winogradskyi Nb-255]
 gi|74421618|gb|ABA05817.1| Conserved hypothetical protein 46 [Nitrobacter winogradskyi Nb-255]
          Length = 257

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/243 (42%), Positives = 147/243 (60%), Gaps = 1/243 (0%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           I     RL+VD PL    +   + +Q +YL +VLR+  G N+L+FNG+DGEW + IS   
Sbjct: 6   IDFRSPRLYVDAPLAAGNRVPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAISGRK 65

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +    ++   +R Q    DV Y F+P+K  RLDYM+QK+VEMG  A++PV+TR+TQ    
Sbjct: 66  RPEHLEIVAATRKQDHLRDVHYAFAPLKHARLDYMVQKAVEMGASALQPVLTRFTQVGRV 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N +R+R   I AAEQC IL+L  +  P  L+  L        +VF DE   + N +  L 
Sbjct: 126 NGERMRANVIEAAEQCGILSLAAVEEPAQLDRWLGRRAGERLLVFCDEAASTANPVRALE 185

Query: 183 AIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            +  +   + +L+GPEGG+   E+E L + P +  LSLGPRILR+DTAAVA +ALVQ + 
Sbjct: 186 TVRSVARGIDVLVGPEGGFADNERENLLNQPNILRLSLGPRILRADTAAVAVLALVQTVL 245

Query: 242 GDW 244
           GDW
Sbjct: 246 GDW 248


>gi|256111326|ref|ZP_05452352.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 3
           str. Ether]
 gi|265992832|ref|ZP_06105389.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262763702|gb|EEZ09734.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 248

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 150/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP  +     +  L  WD + +++F DE   S++ L 
Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCWEALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|16761869|ref|NP_457486.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143356|ref|NP_806698.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|291084775|ref|ZP_06542159.2| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25345391|pir||AF0877 conserved hypothetical protein STY3247 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504171|emb|CAD02918.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138990|gb|AAO70558.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 243

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|213023350|ref|ZP_03337797.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163039|ref|ZP_03348749.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424112|ref|ZP_03357005.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580648|ref|ZP_03362474.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213612784|ref|ZP_03370610.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648200|ref|ZP_03378253.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850166|ref|ZP_03381064.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828647|ref|ZP_06546457.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 259

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHASINT 197

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251

Query: 238 QAICGD 243
           Q   GD
Sbjct: 252 QVRFGD 257


>gi|254699975|ref|ZP_05161803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 5 str.
           513]
 gi|254710992|ref|ZP_05172803.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis
           B2/94]
 gi|254712536|ref|ZP_05174347.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M644/93/1]
 gi|254715608|ref|ZP_05177419.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M13/05/1]
 gi|256029374|ref|ZP_05442988.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis
           M292/94/1]
 gi|256059062|ref|ZP_05449271.1| 16S ribosomal RNA methyltransferase RsmE [Brucella neotomae 5K33]
 gi|256157566|ref|ZP_05455484.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti M490/95/1]
 gi|256253459|ref|ZP_05458995.1| 16S ribosomal RNA methyltransferase RsmE [Brucella ceti B1/94]
 gi|260167538|ref|ZP_05754349.1| 16S ribosomal RNA methyltransferase RsmE [Brucella sp. F5/99]
          Length = 248

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|332559480|ref|ZP_08413802.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           WS8N]
 gi|332277192|gb|EGJ22507.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           WS8N]
          Length = 257

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/250 (36%), Positives = 138/250 (55%), Gaps = 14/250 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL        + DQ HYL  V+R+  G  + LFNG+DGEW ++++  GK     
Sbjct: 7   RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAEAGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
              +++       D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  LCTHRTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177
           + + + AAEQC    +P +   T LE LL +W  + +I++ DE+     +          
Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGLLEAAGGFE 186

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E+          AILIGPEGG+  EE+  L  +  V P+SLGPRILR+DTAAVAA+
Sbjct: 187 ARGFEEGPKRPSPGPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVAAL 246

Query: 235 ALVQAICGDW 244
            L Q++ GDW
Sbjct: 247 TLWQSVLGDW 256


>gi|294675943|ref|YP_003576558.1| hypothetical protein RCAP_rcc00386 [Rhodobacter capsulatus SB 1003]
 gi|294474763|gb|ADE84151.1| protein of unknown function DUF558, methyltransferase predicted
           [Rhodobacter capsulatus SB 1003]
          Length = 241

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 4/237 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL V  PL        S DQ +YL  V+R+  GD + LFNG+DGEW +++    K     
Sbjct: 7   RLCVTHPLGPGQAVPLSPDQANYLFAVMRLGPGDRVALFNGRDGEWTAEVVEGSKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
                +  Q    D+  +F+PIK  R D++++K+ E+G   I PV T +T       DR+
Sbjct: 67  ACLGLAAPQLNPPDLWLLFAPIKKERTDFIVEKAAELGCAKILPVQTEFTNAARIKQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     L+ +LK+W+   +I++ DE+       + L  +A  
Sbjct: 127 QAHALEAAEQCLGTYVPEVSDLQPLQKVLKSWNPARRILWGDESLVG--PAQTLAGLAPG 184

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AIL+GPEGG+   E+  L +LPFVTP+SLGPRILR+DTAA AA+ L Q+  GDW
Sbjct: 185 P-WAILVGPEGGFSETERHQLRALPFVTPVSLGPRILRADTAACAAITLWQSSLGDW 240


>gi|37525153|ref|NP_928497.1| hypothetical protein plu1185 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784579|emb|CAE13479.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 243

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L   T+   S +  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRVYHPELLSSNTEIYLSDEAANHVGRVLRMSHGQQLQLFDGSNQIFNAQITEASKKS 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++  +     +  +   ++       +  ++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VKVHISNSELADNESPLNLHLGQVISRGEKMEFTIQKSVELGVNVITPLISERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   LE      D + ++        S N+
Sbjct: 122 ERLAKKLQQWQKIAIAACEQCCRNRVPEIRPVMQLEHWCAENDGSLKLNLHPRASQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG   +E     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVEKVRLLIGPEGGLSIDEIAMTANYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|330830726|ref|YP_004393678.1| hypothetical protein B565_3026 [Aeromonas veronii B565]
 gi|328805862|gb|AEB51061.1| hypothetical protein B565_3026 [Aeromonas veronii B565]
          Length = 243

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L +      S D  +++  VLRM+ G  + LFNG   ++ + I+ VGK  
Sbjct: 2   RIPRIYEPATLQVGQTIALSEDGANHIGRVLRMQPGQQLELFNGDGNQYPATIANVGKKS 61

Query: 66  RFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                     Q       +       + +++D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVTIDSCDVQSVESPLAIHLGQVISRGDKMDFTIQKSVELGVTCITPLFSERCGVKLPA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                  ++ +   ISA EQC    +P +  P  L+  L       ++        S N+
Sbjct: 122 DRLEKKREQWQKVVISACEQCGRNVVPEVRMPIELDAWLAEETKELKLNLHPRAEYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           V +LIGPEGG  S+E        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPV-----PEHGVRLLIGPEGGLSSDEIARTVQEDFKEML-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QCRFGD 241


>gi|254360572|ref|ZP_04976721.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213]
 gi|153091112|gb|EDN73117.1| hypothetical protein MHA_0127 [Mannheimia haemolytica PHL213]
          Length = 243

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL        S D  +++  VLRMK+G+ I+LF+G +  + + +  V K  
Sbjct: 2   RIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRE 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG  +EE     S  F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPNV----PKAGVRLLIGSEGGLSAEEIAMTESEGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|126463427|ref|YP_001044541.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105091|gb|ABN77769.1| protein of unknown function DUF558 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 257

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 137/250 (54%), Gaps = 14/250 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL        + DQ HYL  V+R+  G  + LFNG+DGEW ++++  GK     
Sbjct: 7   RLYVEQPLGRGQPVPLTQDQAHYLFGVMRLARGAAVSLFNGRDGEWRAEVAETGKRGGTL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+       D+  +F+PIK  R D++++K+ EMG   I PV TR+T +     DR+
Sbjct: 67  LCTDQTAPLRLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTRFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS---------- 177
           + + + AAEQC    +P +   T LE LL +W  + +I++ DE+     +          
Sbjct: 127 QAHAVEAAEQCGGTFVPEVADLTNLERLLADWPADRRIMWCDESLVGARAGLLEAAGGFE 186

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E+          AILIGPEGG+  EE+  L  +  V P+SLGPRILR+DTAAVAA+
Sbjct: 187 ARGFEEGPKRPSPRPWAILIGPEGGFSEEEQARLRRMEQVVPVSLGPRILRADTAAVAAL 246

Query: 235 ALVQAICGDW 244
            L Q++ GDW
Sbjct: 247 TLWQSVLGDW 256


>gi|283788532|ref|YP_003368397.1| hypothetical protein ROD_50401 [Citrobacter rodentium ICC168]
 gi|282951986|emb|CBG91713.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 243

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R++   P+   TQ     D  ++   VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RTPRIYHPEPVTPGTQISLCEDAANHTGRVLRMGPGQPLQLFDGSNQVFDAEIVLASKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLRGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASDSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|254705760|ref|ZP_05167588.1| 16S ribosomal RNA methyltransferase RsmE [Brucella pinnipedialis
           M163/99/10]
          Length = 248

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 148/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR              
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRXPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|240949405|ref|ZP_04753746.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305]
 gi|240296154|gb|EER46810.1| 16S rRNA m3U1498 methyltransferase [Actinobacillus minor NM305]
          Length = 243

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL  KT    S D  +++  VLRM  G+ I+LF+G +  + + +  V K  
Sbjct: 2   RIPRIYHPEPLIGKTTCILSEDATNHVGRVLRMTAGEQIILFDGSNHVFHATLQAVEKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S +      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IIAEITSSELDDRESPLSIHLGQVISRGDRMEFTIQKSVELGVKVITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +     +  V +LIG EGG   EE        F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPNM----PVAGVRLLIGSEGGLSPEEIAMTEKEGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|297517146|ref|ZP_06935532.1| 16S ribosomal RNA methyltransferase RsmE [Escherichia coli OP50]
          Length = 236

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 14/241 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKS 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQC    +P I P   LE      D   ++        S N+
Sbjct: 122 ERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 Q 238
           Q
Sbjct: 236 Q 236


>gi|205354017|ref|YP_002227818.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273798|emb|CAR38793.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326629130|gb|EGE35473.1| 16S ribosomal RNA methyltransferase RsmE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 259

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I PP  LE      D   ++        S N+
Sbjct: 138 ERLNKRRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINT 197

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 198 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 251

Query: 238 QAICGD 243
           Q   GD
Sbjct: 252 QVRFGD 257


>gi|77361513|ref|YP_341088.1| hypothetical protein PSHAa2598 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876424|emb|CAI87646.1| putative RNA methyltransferase with a deep trefoil knot, RrmA and
           YibK are structural paralogs [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 244

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            +  ++    + + T      D   ++  VLRMK G+++ +FNG+ GE+LS+I  V K  
Sbjct: 2   RVPHIYQASSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKN 61

Query: 66  RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              +  Q  +        +       + +++D+ IQKSVE+G+  I P+ ++        
Sbjct: 62  VVVMPQQLNTHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLMG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+AAEQ     +P ++PP  L+  L       ++        S  +
Sbjct: 122 DRLDKKHQQWQKIAIAAAEQSGRNFVPVVHPPVDLKQWLAQQSAAIKLTLHPRAEHSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +           V  L+GPEGG+  EE        FV  + LGPR+LR++TAA+  ++ +
Sbjct: 182 ITV-----PKDGVRFLVGPEGGFTDEEMAQTKQQNFV-DIRLGPRVLRTETAALTVLSAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLQFGD 241


>gi|229220771|ref|YP_001783785.2| 16S ribosomal RNA methyltransferase RsmE [Haemophilus somnus 2336]
          Length = 245

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +   + S D  +++  VLRM+ G+ I LF+G +  + + I+   K  
Sbjct: 2   RIPRIYHPTSLENQQTCQLSDDAANHVGRVLRMQVGEQIELFDGSNHIYPAIITQTNKKA 61

Query: 66  RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   Q  ++     +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IEVNILSRQLDNRESPLFIHLGQVISRGERMEFTIQKSVELGVNIITPLWSERCGVKLDK 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   ISA EQC    +P I P   L+      D   ++        +  +
Sbjct: 122 DRMEKKIQQWQKIAISACEQCGRNIVPEIRPLMKLQDWCAEQDGTLKLNLHPRAKYTIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L ++        V +LIGPEGG  ++E     +  F T + LG R+LR++T A++A+  +
Sbjct: 182 LPEI----PPQGVRLLIGPEGGLSAQEISQTETQGF-TEILLGKRVLRTETTALSAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|17988874|ref|NP_541507.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1
           str. 16M]
 gi|256043637|ref|ZP_05446562.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256262333|ref|ZP_05464865.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260564827|ref|ZP_05835312.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990057|ref|ZP_06102614.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17984700|gb|AAL53771.1| surface protein [Brucella melitensis bv. 1 str. 16M]
 gi|260152470|gb|EEW87563.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000726|gb|EEZ13416.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092061|gb|EEZ16358.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
          Length = 248

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQA 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 LRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|297544383|ref|YP_003676685.1| hypothetical protein Tmath_0939 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842158|gb|ADH60674.1| protein of unknown function DUF558 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 245

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           +++ FVD     +      G   H++ +VLR+K+GD I++ +G   E+ + I  V K  +
Sbjct: 1   MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDGS-TEYQTSIYGVEKNRV 59

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E + +S T+ S  +       K+++++ +IQK  E+G+    P+ITRY+       
Sbjct: 60  ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  ++R    +  A +Q    +LP I  P + E  LK  +     +   E   +    
Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L  + +I  VAI IGPEGG+  EE +          +SLGPRILR++TAA++  ++V 
Sbjct: 180 EVLDGVKNIKKVAIFIGPEGGFSEEEVDLALRYS-AKLVSLGPRILRTETAAISVCSIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YELGD 243


>gi|85703484|ref|ZP_01034588.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217]
 gi|85672412|gb|EAQ27269.1| hypothetical protein ROS217_22122 [Roseovarius sp. 217]
          Length = 243

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 4/238 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+++ PL        S  Q HYL  V+R   GD +L+FNG+ GEW +++   GK     
Sbjct: 7   RLYLEHPLGEGQTIPLSQPQAHYLFGVMRQGVGDAVLVFNGEAGEWRAEVIEAGKRGGIL 66

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++  Q+  Q    D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR+
Sbjct: 67  QIAEQTAPQRDPPDLWLMFAPIKKARTDFIVEKAAEMGAARIIPVQTEFTNSERIRQDRL 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-HAIAH 186
           + + + AAEQC    +P +     L+ +L +W    Q++F DE        E L   +  
Sbjct: 127 QAHAVEAAEQCGGTYVPEVSDLHRLDRMLADWPEARQVMFCDEALAG--CAEGLGRDLPR 184

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E+  L +LP    +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 185 GAPWAILIGPEGGFSEAERARLAALPQAHAVSLGPRILRADTAAVAAMTLWQNSLGDW 242


>gi|149911573|ref|ZP_01900186.1| hypothetical protein PE36_05278 [Moritella sp. PE36]
 gi|149805352|gb|EDM65364.1| hypothetical protein PE36_05278 [Moritella sp. PE36]
          Length = 243

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIR 66
            R+F    L + +  + S D   ++  VLRM  GD + LFNGK G++ + I     KS+ 
Sbjct: 4   PRIFESGELIVGSSFELSPDGAGHVGRVLRMTTGDTLTLFNGKGGQYQATIEQTTKKSVT 63

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             + E+Q  +      +    +  + +++D+ IQKSVE+G+ AI P+ +         + 
Sbjct: 64  VHIDEFQDINSESPLKIHLGQAISRGDKMDFTIQKSVELGVTAITPLFSERCGVKLSGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + +   I+A EQ     +P + PP  L+          ++        S N+L 
Sbjct: 124 LEKKIQQWQKIVIAACEQSGRNFVPQVLPPKQLKDWAAEETTELKLNLHPRAKYSINTLP 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +         V +LIGPEGG  ++E        F   L LGPR+LR++TAA+ A+  +Q 
Sbjct: 184 E-----PKHGVRLLIGPEGGLSADEINMTEQFNFEETL-LGPRVLRTETAALTAITALQC 237

Query: 240 ICGD 243
             GD
Sbjct: 238 RFGD 241


>gi|327412916|emb|CAX67930.1| conserved hypothetical protein [Salmonella bongori]
          Length = 243

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGPGQVLQLFDGSNQVFAAEIISASKKS 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V   ++  +     +       +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEVQVMKGETDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +    + +   I+A EQC    +P I P   LE      +   ++        S N+
Sbjct: 122 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQEPGLKLNLHPRAHASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  +EE        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSAEEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|327191156|gb|EGE58200.1| hypothetical protein RHECNPAF_3350022 [Rhizobium etli CNPAF512]
          Length = 245

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 144/226 (63%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ +Q++YLA+VLRM+    ILLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLSSGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q+R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEQTRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 VLSAIRE-KHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225


>gi|254293386|ref|YP_003059409.1| 16S ribosomal RNA methyltransferase RsmE [Hirschia baltica ATCC
           49814]
 gi|254041917|gb|ACT58712.1| protein of unknown function DUF558 [Hirschia baltica ATCC 49814]
          Length = 256

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 143/253 (56%), Gaps = 12/253 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            S + RLFV   L +      + +Q +YL  VLR+ + D + +FNG+DGEW + ++ V +
Sbjct: 1   MSTIPRLFVKADLTLGAPIALTSEQANYLFRVLRLSKNDAVRVFNGRDGEWRASVTEVMR 60

Query: 64  SIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           S  F  +E     Q    D+Q +F+P+K    D++++K+ E+G+  I+PVIT+ TQ +  
Sbjct: 61  SAGFLCLEELIVPQAVIGDLQLLFAPLKKTCTDFVVEKATELGVTMIQPVITKRTQTSTV 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------- 175
            + R+      AAEQ + L +P +  P  L   L  WD N ++VF DE            
Sbjct: 121 RVSRLEKIVEEAAEQTERLDIPLVQEPIQLLEALGKWDKNRRLVFCDEAGDDPTENWGGD 180

Query: 176 --NSLEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              +   + AI+ + +   AILIGPEGG+  EE++ L    +V P++LGPRILR++TAAV
Sbjct: 181 VGRARPMMEAISELKDGLAAILIGPEGGFSPEERKYLRQQDYVIPVTLGPRILRAETAAV 240

Query: 232 AAMALVQAICGDW 244
           +A+ L QA  GDW
Sbjct: 241 SALTLWQAARGDW 253


>gi|218710623|ref|YP_002418244.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio splendidus LGP32]
 gi|218323642|emb|CAV19930.1| Hypothetical protein VS_2677 [Vibrio splendidus LGP32]
          Length = 243

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R++    +    Q   S D   ++  VLRMKEG ++LLF+G   E+ + I+ V K  
Sbjct: 2   RTPRIYHPELINQLGQLALSEDAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKN 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ    T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAIAACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      I  V +LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PISKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|148980482|ref|ZP_01816079.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3]
 gi|145961207|gb|EDK26521.1| hypothetical protein VSWAT3_21045 [Vibrionales bacterium SWAT-3]
          Length = 243

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     +          D   ++  VLRMKEG  +LLF+G   E+ + I+ V K  
Sbjct: 2   RIPRIHHPERIHQLGSLALGEDAAGHVGRVLRMKEGQEVLLFDGSGTEFPATIAEVSKKN 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAIAACEQCGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      I  V +LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PISKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|114561729|ref|YP_749242.1| hypothetical protein Sfri_0543 [Shewanella frigidimarina NCIMB 400]
 gi|114333022|gb|ABI70404.1| protein of unknown function DUF558 [Shewanella frigidimarina NCIMB
           400]
          Length = 246

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 13/247 (5%)

Query: 6   HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F     L      +   D   ++  VLRM  GD I LFNG   ++L++I    K 
Sbjct: 2   RVPRIFQPLDNLQQGQTLQLDEDGVAHIGRVLRMGMGDQISLFNGDGNDYLAEIIETSKK 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                     +   +S +      +  + +R+++ +QKSVE+G+  I P+ +        
Sbjct: 62  SIAVTVLSCEANNSESPLDLHLGQVISRGDRMEFTVQKSVELGVTTITPLFSDRCGVKLS 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   ISA EQ     +P + P  TL    +      ++          N
Sbjct: 122 GERLEKKLQQWQKIVISACEQSGRSIVPIVRPAMTLAQWCEESTEALKLNLHPRASHGIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+          V +LIGPEGG   EE     +  F T + LGPR+LR++TA++ A+  
Sbjct: 182 GLQL---SGQHHKVRLLIGPEGGLSDEEIAMTETQHF-TDILLGPRVLRTETASLTAITA 237

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 238 LQVKFGD 244


>gi|312114482|ref|YP_004012078.1| hypothetical protein Rvan_1732 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219611|gb|ADP70979.1| protein of unknown function DUF558 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 242

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 141/240 (58%), Gaps = 2/240 (0%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            ++R+FV   L    +      Q HYL +VLR+ EG  +L F+G  GEW +KI    KS 
Sbjct: 2   AMQRIFVANKLDPDGEIALDTAQAHYLLNVLRLSEGAEVLTFDGTSGEWRAKIVKARKSA 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
              ++  + R QT  + + Y F+P+K  RLDYM+QK+VEMG   ++PVIT++T       
Sbjct: 62  CTIRLMEKVREQTAPTGIHYAFAPLKQARLDYMVQKAVEMGASLLQPVITQHTAVPRLGA 121

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DR++   I AAEQC +LTLP I  P      L+ +D +  +VF DE     + L+ L A+
Sbjct: 122 DRMKANAIEAAEQCGVLTLPEIKAPVKFAAFLQAFDKDRALVFCDERAEVASPLDALSAL 181

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +    V  LIGPEGG+   E+  L S  FV P+SLGPRI+R+DTAAVA +AL+    GDW
Sbjct: 182 S-GRKVTALIGPEGGFSENERADLLSRSFVCPISLGPRIMRADTAAVAVLALLNVTVGDW 240


>gi|110632733|ref|YP_672941.1| hypothetical protein Meso_0372 [Mesorhizobium sp. BNC1]
 gi|110283717|gb|ABG61776.1| protein of unknown function DUF558 [Chelativorans sp. BNC1]
          Length = 248

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 142/226 (62%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL++   L    + + + +Q HYL +VLRM+ G  +L+FNG+ GEWL+++  
Sbjct: 1   MRANYKMQRLYLPEDLSKGAEVETTREQAHYLGNVLRMRGGAELLVFNGRHGEWLAEVKE 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K      V   +R QT Q D+ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  ISKKSALLAVRELTREQTPQPDILYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQI 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR++   I AAEQC IL++P +  P  L+ LL  W+   ++VF DE    +N   
Sbjct: 121 PKLGTDRLQANVIEAAEQCGILSIPLVREPVKLDVLLSRWEEGRRLVFCDEDAPGQNPFP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           +L A+A    + +L+GPEGG+   E+ TL SL FV P+ LGPRILR
Sbjct: 181 RLSALA-GERLGLLVGPEGGFSDSERRTLRSLAFVVPIPLGPRILR 225


>gi|240850045|ref|YP_002971438.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup]
 gi|240267168|gb|ACS50756.1| hypothetical protein Bgr_04270 [Bartonella grahamii as4aup]
          Length = 247

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 108/226 (47%), Positives = 139/226 (61%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+   L +  + K  G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+  
Sbjct: 1   MRINYKLKRLFIRQTLALNEEIKIEGAQASYLVHVLRMKEGAEILLFNGQDGEWLAKLII 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           V K  +  ++ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP      +L  LL  WD    + F DE   S N L 
Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLARWDETQPLFFCDEEHKSHNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                  +    ILIGPEGG+  EE+  L   PFV P+SLGPRILR
Sbjct: 181 SFKK-RDVTTPGILIGPEGGFSEEERSFLKKHPFVVPISLGPRILR 225


>gi|325577675|ref|ZP_08147950.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160420|gb|EGC72546.1| 16S rRNA methyltransferase RsmE [Haemophilus parainfluenzae ATCC
           33392]
          Length = 263

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  ++  + S D  +++  VLRM E + I LF+G +  + +KI  V K  
Sbjct: 21  RIPRIYHPESLKNQSTCQLSEDAANHVGRVLRMTESEQIELFDGSNHIYPAKIIEVSKKA 80

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       K+S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 81  VKVEILGCELSDKESNLSIHLGQVISRGDRMEFTIQKSVELGVNVITPLWSERCGVKLDG 140

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 141 ERMDKKIQQWQKIAIAACEQCGRNVVPEIRPLMKLQDWCAENDGTLKLNLHPRAQYSIKT 200

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG   +E        F T + LG R+LR++TA++AA++ +
Sbjct: 201 LPSI----PKEGVRLLIGSEGGLSPQEIVQTEQQGF-TEILLGKRVLRTETASLAAISAL 255

Query: 238 QAICGD 243
           Q   GD
Sbjct: 256 QICFGD 261


>gi|311695817|gb|ADP98690.1| ribosomal RNA small subunit methyltransferase E [marine bacterium
           HP15]
          Length = 244

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ +  L   +  +   +   ++  VLRM+ G  +LLFNG   ++ + IS   K  
Sbjct: 2   RIPRIYTNSALAQGSTAELDDNAAQHVGRVLRMQAGQELLLFNGDGNDYPATISSASKKN 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V     + T+   ++    +  K +R+DY +QK+VEMG+  I P+ T         
Sbjct: 62  VEVQVGTPEANTTESPLEIVLGQTLSKGDRMDYAVQKAVEMGVTRIVPLTTERCDVKLKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176
                 +   ++  ISAAEQC    +P I P  T+   L+ + D   ++V    T     
Sbjct: 122 DREDKRLRHWQSVAISAAEQCGRARVPEILPVMTVSEWLEHSRDCEVRLVLHHRTEH--- 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L +I     VA++IGPEGG   EE        F+ P++LGPR+LR++TA VAAMAL
Sbjct: 179 ---ALKSIIPPERVALMIGPEGGLSPEEIAHAEKEGFL-PVALGPRVLRTETAPVAAMAL 234

Query: 237 VQAICGD 243
            Q + GD
Sbjct: 235 CQWLWGD 241


>gi|157960429|ref|YP_001500463.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella pealeana ATCC
           700345]
 gi|157845429|gb|ABV85928.1| protein of unknown function DUF558 [Shewanella pealeana ATCC
           700345]
          Length = 243

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L +        +   ++  VLRM  G+ + LFNG   ++L++I    K  
Sbjct: 2   RVPRIYQQSTLVVGQSVALDDEAAGHVGRVLRMSSGEQVSLFNGDGNDYLAEIISASKKN 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  KV     + ++   ++       + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVKVLSCEANDSESPLNLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLTG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ     +P I P   L           ++          N 
Sbjct: 122 ERLDKKIQQWQKIVISACEQSGRSVVPVIRPAMQLSDWCAEDSDAVKLNLHPRASHGVNG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           V ++IGPEGG  + E        F T + LGPR+LR++TAA+  ++ +
Sbjct: 182 LTL-----PNNRVRLVIGPEGGLSAPEIAMTEEHQF-TDVLLGPRVLRTETAALTTISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|167040699|ref|YP_001663684.1| 16S ribosomal RNA methyltransferase RsmE [Thermoanaerobacter sp.
           X514]
 gi|300914740|ref|ZP_07132056.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561]
 gi|307724026|ref|YP_003903777.1| hypothetical protein Thet_0859 [Thermoanaerobacter sp. X513]
 gi|166854939|gb|ABY93348.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X514]
 gi|300889675|gb|EFK84821.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X561]
 gi|307581087|gb|ADN54486.1| protein of unknown function DUF558 [Thermoanaerobacter sp. X513]
          Length = 245

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           +++ FVD     +      G   H++ +VLR+K+GD I++ +G   E+ + I  V K  +
Sbjct: 1   MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDGS-TEYQTSIYGVEKNRV 59

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E + +S T+ S  +       K+++++ +IQK  E+G+    P+ITRY+       
Sbjct: 60  ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  ++R    +  A +Q    +LP I  P + E  LK  +     +   E   +    
Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFEEALKQIEEFDLCIIPYEKEKTLKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L  + +I  VAI +GPEGG+  EE +          +SLGPRILR++TAA++  ++V 
Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDLALRYS-AKLVSLGPRILRTETAAISVCSIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YELGD 243


>gi|307132693|ref|YP_003884709.1| hypothetical protein Dda3937_00423 [Dickeya dadantii 3937]
 gi|313104178|sp|P37995|RSME_DICD3 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|306530222|gb|ADN00153.1| predicted protein [Dickeya dadantii 3937]
          Length = 244

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L     +   S D  +++  VLRM  G  + LF+G +  + ++I   GK 
Sbjct: 2   RIPRIFHPDTLTPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKK 61

Query: 65  -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R +    Q+ ++     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  NVRVRYAAGQTENRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC    +P I P  TLE      D+  ++        S N
Sbjct: 122 GERLEKKIAQWQKIAIAACEQCGRNRVPEIRPVQTLESWCAEPDNGLKLNLHPRAAHSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  + +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  
Sbjct: 182 TLPL-----PVSRIRLLIGPEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|322514739|ref|ZP_08067765.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976]
 gi|322119334|gb|EFX91450.1| 16S rRNA methyltransferase RsmE [Actinobacillus ureae ATCC 25976]
          Length = 248

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +T+   S D  +++  VLRM EGD I+LF+G +  + + +  VGK  
Sbjct: 7   RIPRIYHPELLANQTRCILSEDATNHVGRVLRMTEGDQIILFDGSNHIFHATLQAVGKKQ 66

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 67  IIAKIDSSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLCSERCGVKLND 126

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 127 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPFMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 186

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG  +EE     +  F T + LG R+LR++TA++ A+  +
Sbjct: 187 LPNV----PEAGVRLLIGSEGGLSAEEIAMTETEGF-TEVLLGKRVLRTETASLTAITAL 241

Query: 238 QAICGD 243
           Q   GD
Sbjct: 242 QVCFGD 247


>gi|332535117|ref|ZP_08410927.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035435|gb|EGI71933.1| ribosomal RNA small subunit methyltransferase E [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 244

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            +  ++    + + T      D   ++  VLRMK G+++ +FNG+ GE+LS+I  V K  
Sbjct: 2   RVPHIYQTSSIALNTPVTLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVTKKT 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E           +       + +++D+ IQKSVE+G+  I P+ ++        
Sbjct: 62  VVVMPLELNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLMG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+AAEQ     +P I+PP  L+  L       ++        S  +
Sbjct: 122 DRLEKKHQQWQKIAIAAAEQSGRNFVPIIHPPIDLKQWLAQQTDAIKLTLHPRAEHSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +           V  L+GPEGG+  +E      L FV  + LGPR+LR++TAA+  ++ +
Sbjct: 182 ITV-----PKDGVRFLVGPEGGFTDDEMALTKQLEFV-DIRLGPRVLRTETAALTVLSAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLQFGD 241


>gi|190890510|ref|YP_001977052.1| hypothetical protein RHECIAT_CH0000889 [Rhizobium etli CIAT 652]
 gi|190695789|gb|ACE89874.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 245

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 144/226 (63%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +AS +Q++YLA+VLRM+    ILLFNG+DGEW + +S+
Sbjct: 1   MRANFRMQRLFVDAPLSAGAVVEASAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEETRPQPLPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225


>gi|161017487|emb|CAK01045.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 277

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+   L +  + K  G Q  YL HVLRMKEG  IL+FNG+DGEWL+K+  
Sbjct: 31  MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 90

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           V K  +  ++ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG   ++PVIT +TQ 
Sbjct: 91  VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 150

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP      +L  LL+ WD    + F DE   S N L 
Sbjct: 151 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 210

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                 ++    +LIGPEGG+  EE+  L   PFV P+SLGPRILR
Sbjct: 211 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILR 255


>gi|229597125|ref|YP_001622546.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis ATCC 23445]
          Length = 248

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/255 (41%), Positives = 149/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 181 ILTGLELGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|295097485|emb|CBK86575.1| 16S rRNA m(3)U-1498 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 248

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +    +   S D  +++  VLRM  G  I LF+G +  + ++I+   K  
Sbjct: 7   RIPRIYHPELITPGGEIALSDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKS 66

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 67  VHVKVLRGEVDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 126

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQ     +P I P   LE      +   ++        S N+
Sbjct: 127 ERLNKKIQQWQKIAIAACEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINT 186

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 187 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 240

Query: 238 QAICGD 243
           Q   GD
Sbjct: 241 QVRFGD 246


>gi|119470540|ref|ZP_01613243.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7]
 gi|119446241|gb|EAW27518.1| hypothetical protein ATW7_12016 [Alteromonadales bacterium TW-7]
          Length = 244

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            +  ++    + + T      D   ++  VLRMK G+++ +FNG+ GE+LS+I  V K  
Sbjct: 2   RVPHIYQASSITLNTPVSLDDDAAGHIGRVLRMKVGEHVSIFNGEGGEYLSEIIEVSKKN 61

Query: 66  RFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              +  Q           +       + +++D+ IQKSVE+G+  I P+ ++        
Sbjct: 62  VVVMPQQFNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLIG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+AAEQ     +P ++PP  ++  L+   +  ++        S  +
Sbjct: 122 DRLDKKHQQWQKIAIAAAEQSGRNYVPVVHPPIDIKQWLEQSTNAIKLTLHPRAEHSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +           V  L+GPEGG+  EE        FV  + LGPR+LR++TAA+  ++ +
Sbjct: 182 ITV-----PEDGVRFLVGPEGGFTDEEMAQTKQQEFV-DIRLGPRVLRTETAALTVLSAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLQFGD 241


>gi|254787838|ref|YP_003075267.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901]
 gi|237684009|gb|ACR11273.1| 16S rRNA m3U1498 methyltransferase [Teredinibacter turnerae T7901]
          Length = 241

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +          H+L  VLRM+ G  ++LFNG  GE+ + I+   K  
Sbjct: 2   RIPRIYTQQLLQPEVDVVLEEAASHHLLKVLRMETGRELILFNGLGGEYRATITSATKKA 61

Query: 66  RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +         + +R D+++QK+ E+G+  I P+ +  +      
Sbjct: 62  ATVTISEHDPVERESPLVTELAVGISRGDRFDWVLQKATELGISRIVPLFSERSEVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I A EQC   TLP +  P ++E  + +   + + V    +      
Sbjct: 122 ERLEKRLSQWQKVVIGACEQCQRNTLPELTAPQSVENYVTDSLCDLRFVLHHRSTHH--- 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L  +A   +VA+L+GPEGG    E +   +  F +PL+LGPR+LR++TA + A+++V
Sbjct: 179 ---LSQLAAPASVALLVGPEGGLSDAEIQLAENAGF-SPLALGPRVLRTETAPLVALSVV 234

Query: 238 QAICGDW 244
           QA  GD+
Sbjct: 235 QATWGDF 241


>gi|167855789|ref|ZP_02478542.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755]
 gi|167853068|gb|EDS24329.1| hypothetical protein HPS_03114 [Haemophilus parasuis 29755]
          Length = 244

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  K+    S D ++++  VLRM EG  ++LF+G +  + + I  V K  
Sbjct: 2   RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I  K++  Q   +     +       + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  ISVKIQNSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPLWSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P   L    K  D   ++        S  S
Sbjct: 122 ERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKLTDWCKEQDGMLKLNLHPRAKYSLKS 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG   EE     +  F T + LG RILR++TA++A + ++
Sbjct: 182 LLNV----PQEGVRLLIGSEGGLSPEEIAMTEAENF-TEVLLGKRILRTETASLATITVL 236

Query: 238 QAICGD 243
           Q + GD
Sbjct: 237 QMLYGD 242


>gi|197104001|ref|YP_002129378.1| hypothetical protein PHZ_c0535 [Phenylobacterium zucineum HLK1]
 gi|196477421|gb|ACG76949.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 239

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 3/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + RLFV   L    +      Q  YLA V+R K GD + +FNG+DGEW + ++ VGK  +
Sbjct: 1   MIRLFVTHDLSAGAELALDEGQSRYLAAVMRAKAGDELRVFNGRDGEWRALVAAVGKRAV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +V   +R Q    D+  + + +K   L+ +++K+ E+G   IRPV+T  T   H  ++
Sbjct: 61  TLQVIDPARPQAPGPDLDLVVALVKRAPLETIVEKAAELGARRIRPVVTERTNADHTRVE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R     A+EQ   L +P +  P  LE LL  W+   +++F DE   +   LE L   A
Sbjct: 121 RLRAIATEASEQTGRLDVPEVTEPVKLERLLAEWEPGRRLLFCDEAGDARPVLEALEGAA 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AILIGPEGG+   E+E L +LP+  P SLGPRILR+DTAA++A+AL QA  GDW
Sbjct: 181 GP--WAILIGPEGGFSPREREALRALPYAVPASLGPRILRADTAAISALALWQAAAGDW 237


>gi|209548049|ref|YP_002279966.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533805|gb|ACI53740.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 147/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ DQ++YLA+VLRM+EG  +LLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLSSGAALEANADQFNYLANVLRMEEGGEVLLFNGRDGEWKATLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I+     ++R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRIQLTAIEETRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLGIPDVAEPVRLLDLLDRWPKERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225


>gi|219871131|ref|YP_002475506.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus parasuis
           SH0165]
 gi|219691335|gb|ACL32558.1| conserved hypothetical protein [Haemophilus parasuis SH0165]
          Length = 244

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  K+    S D ++++  VLRM EG  ++LF+G +  + + I  V K  
Sbjct: 2   RIPRIYHPEALAGKSHCILSEDAFNHVGRVLRMGEGAELVLFDGSNHIFNAIIDNVSKKQ 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I  K++  Q   +     +       + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  ISVKIQNSQLDDRESPLPIHLGQVISRGDRMEFTIQKSVELGVTTITPLWSERCGVKLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P   L    +  D   ++        S  S
Sbjct: 122 ERQDKKIQQWQKIAISACEQCGRNIIPEIRPIMKLTDWCQEQDGMLKLNLHPRAKYSLKS 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG  SEE     +  F T + LG RILR++TA++A +  +
Sbjct: 182 LPNI----PKEGVRLLIGSEGGLSSEEIAMTEAENF-TEVLLGKRILRTETASLATITAL 236

Query: 238 QAICGD 243
           Q + GD
Sbjct: 237 QMLYGD 242


>gi|159045639|ref|YP_001534433.1| 16S ribosomal RNA methyltransferase RsmE [Dinoroseobacter shibae
           DFL 12]
 gi|157913399|gb|ABV94832.1| protein of unknown function DUF558 [Dinoroseobacter shibae DFL 12]
          Length = 249

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 2/238 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+ PL        SG Q HYL  V+R   G+ + LFNG  G W +++   GK     
Sbjct: 11  RLYVEHPLGQGQTVPLSGAQAHYLFGVMRRGVGEVVTLFNGHAGAWAARVVEAGKRGGVL 70

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +VE Q+  Q    D+   F+PIK  R D++++K+ EMG   I PV T +T       DR+
Sbjct: 71  EVETQTAPQRDPPDLWLCFAPIKKARTDFIVEKAAEMGARRIVPVQTAFTNAERIRRDRL 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-H 186
           + + + AAEQC    +P +     L+ LL +W  +  ++F DE    E +       A  
Sbjct: 131 QAHAVEAAEQCGGTFVPEVADLVGLDRLLSDWPSDRSLMFCDEALAEEGAAAAADTPALP 190

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E+  L ++P    + LGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 191 DGPWAILIGPEGGFSEPERARLRAMPQAQSVRLGPRILRADTAAVAALTLWQIRYGDW 248


>gi|315127638|ref|YP_004069641.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913]
 gi|315016152|gb|ADT69490.1| hypothetical protein PSM_A2576 [Pseudoalteromonas sp. SM9913]
          Length = 244

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            +  ++   P+ + T      D   ++  VLRMK G+ + +FNG+ GE+LS+I  V K  
Sbjct: 2   RVPHIYQSSPIALNTPLNLDDDAAGHVGRVLRMKVGEQVSMFNGEGGEFLSEIIEVSKKT 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E+          +       + +++D+ IQKSVE+G+  I P+ ++        
Sbjct: 62  VVVMPLEFNPHDVESPLKIHLGQCVSRGDKMDFTIQKSVELGITEITPIFSQRCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+AAEQ     +P I PP  L+  L+      ++        S  +
Sbjct: 122 DRLEKKHQQWQKIAIAAAEQSGRNFVPIINPPVDLKHWLEQQTDAIKLTLHPRAEHSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +           V  L+GPEGG+  +E        FV  + LGPR+LR++TAA+  ++ +
Sbjct: 182 ITV-----PDGGVRFLVGPEGGFTDDEMAQTKQQEFV-DIRLGPRVLRTETAALTVLSAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLQFGD 241


>gi|260913267|ref|ZP_05919749.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325]
 gi|260632854|gb|EEX51023.1| 16S rRNA methyltransferase RsmE [Pasteurella dagmatis ATCC 43325]
          Length = 244

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   T  + S D  +++  VLRM+ G+ + LF+G +  + + I+ V K  
Sbjct: 2   RIPRIYHPTSLQGITFCELSEDAANHVGRVLRMQVGEQLELFDGSNHTYAATITQVSKKA 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   +   ++S ++     +  +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVEILSQQLDDRESHLKIHLGQVISRGERMEFTIQKSVELGVSVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   I+A EQC    +P I P   L+      D   ++    +   S  +
Sbjct: 122 DRMEKKIQQWQKIAIAACEQCGRNVIPEIRPLMRLQDWCAEKDGALKLNLHPKAQYSIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG   +E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPAI----PEEGVRLLIGSEGGLSPQEISQTEQQGF-TEVLLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|288550384|ref|ZP_05970221.2| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC
           35316]
 gi|288314998|gb|EFC53936.1| 16S rRNA methyltransferase RsmE [Enterobacter cancerogenus ATCC
           35316]
          Length = 248

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +    +   S D  +++  VLRM  G  I LF+G +  + ++I+   K  
Sbjct: 7   RIPRIYHPELITAGREIALSDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKS 66

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 67  VHVNVLRGEVDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 126

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   ++A EQ     +P I P   LE      +   ++        S N+
Sbjct: 127 ERLNKKIQQWQKIAVAACEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINT 186

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 187 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 240

Query: 238 QAICGD 243
           Q   GD
Sbjct: 241 QVRFGD 246


>gi|160931277|ref|ZP_02078678.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753]
 gi|156869755|gb|EDO63127.1| hypothetical protein CLOLEP_00114 [Clostridium leptum DSM 753]
          Length = 242

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 14/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64
           + R FV+       Q   +G    ++   LRMK GD + L + +  ++   +  +   ++
Sbjct: 1   MPRFFVES--VSGGQVILTGPDAAHMCRSLRMKPGDTVTLCDTQGFDYQCVVQRLSPEEA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               ++           V       K  ++D+++QK+VE+G+  I PV           +
Sbjct: 59  ALTIIDKHQCENEPSLSVILYQGLPKGEKMDWIVQKAVELGVSQIVPVRMERCVSRPDGK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +    DR +   + AA+QC    LP + PP      L         +F  E  G   S+
Sbjct: 119 ASQKKTDRWQKIAVEAAKQCGRGILPQVCPPADFHQALIQAAQAEVFLFCYE--GGGESV 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +L        V++LIGPEGG+   E E       V P++LG RILR++TA +AA++++ 
Sbjct: 177 SRLIT-QKTKTVSVLIGPEGGFSLPEAEAARKAGGV-PVTLGKRILRTETAPLAALSVIM 234

Query: 239 AICG 242
              G
Sbjct: 235 YASG 238


>gi|188580094|ref|YP_001923539.1| hypothetical protein Mpop_0826 [Methylobacterium populi BJ001]
 gi|179343592|gb|ACB79004.1| protein of unknown function DUF558 [Methylobacterium populi BJ001]
          Length = 250

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 145/240 (60%), Gaps = 4/240 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW S+I   G KS  
Sbjct: 9   PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRSEIVPQGRKSAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  Q+R Q   SD+ Y+F+P+KT RLDYM QK+VEMG G ++PV TR+TQ     +DR
Sbjct: 69  LRVVAQTRPQPAPSDLHYLFAPLKTGRLDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-- 184
           ++   I AAEQC IL +P I  P  L   L   D    +VF DE     + +  L     
Sbjct: 129 LQANAIEAAEQCGILAVPEIGEPDRLPACLAALDPGRLLVFCDEDAPVTDPVAALRGAAD 188

Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A  P +A+L+GPEGG+H EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 189 PADPPPLAVLVGPEGGFHPEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|300718242|ref|YP_003743045.1| hypothetical protein [Erwinia billingiae Eb661]
 gi|299064078|emb|CAX61198.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 243

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F    L   ++     +  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 2   RIPRIFHPELLTAGSEIALCDEAANHVGRVLRMGAGQALELFDGSNLTFAAEIVQADKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +SR  +++S +      +  +  ++++ IQK+VE+G+  I P+ +         
Sbjct: 62  VRVSLGESREDSRESPLHLHLGQVMSRGEKMEFTIQKAVELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +   I+A EQC   ++P +     LE      D   ++        S N+
Sbjct: 122 ERLAKKHQQWQKIVIAACEQCGRNSVPEVREAMMLERWSAEQDDGLKLNLHPRASQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLTADEISMTAQYGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|332142455|ref|YP_004428193.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552477|gb|AEA99195.1| hypothetical protein MADE_1015315 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 242

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ ++ + + + D  H++A VLR+K    I+LFNG   E+ +++  V +  
Sbjct: 2   RIPRVYYPNPIPLEQEFELTEDAGHHIATVLRIKPNRPIVLFNGDGNEYSAQVISVQRKK 61

Query: 66  RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    S  +     +       K +R+D ++QKSVE+G+  I PVIT         
Sbjct: 62  VIVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERCTVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   I A EQ     +P +  P +L   L +  +  ++V A    G+E  
Sbjct: 122 SRWEKKIQQWQKIVIGACEQSGRNIIPKLNAPVSLNTWLSSSTNTTRLVLAP---GAEQP 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L       +     +LIGPEGG    E    +   +   +SLGPRILR++TAA+ +++++
Sbjct: 179 LA--RQPYNAQGFRLLIGPEGGLSDTEIHQANENGY-QSVSLGPRILRTETAAITSLSIL 235

Query: 238 QAICGDW 244
           QA  GD+
Sbjct: 236 QAQHGDF 242


>gi|256752132|ref|ZP_05492998.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748946|gb|EEU61984.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 245

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++++F+D            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K  +
Sbjct: 1   MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E +  S T+   ++       K+++++ +IQK  E+G+    PV+TRYT       
Sbjct: 60  ILFLERELESNTESPLEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  + R R  +  A +Q     +P I  P + E  +   D     +   E   +    
Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L     +  + I IGPEGG+  EE E   +   + P+SLGPRILR++TAA+A  ++V 
Sbjct: 180 EVLKKAKGVKKIGIFIGPEGGFSQEEIELALNKS-IKPVSLGPRILRTETAAIAVCSIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YELGD 243


>gi|226942481|ref|YP_002797554.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii
           DJ]
 gi|226717408|gb|ACO76579.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 239

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 19/248 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R F+D PL +         Q HY+  VLR+  GD + LF+G   E+  ++  VGK  
Sbjct: 2   RLSRFFIDAPLALGL-LDLPEAQAHYIGRVLRLAPGDAVQLFDGSGREFRGELVEVGKK- 59

Query: 66  RFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +VE + +          +       +  R+D+ IQK+ E+G+  I P+++        
Sbjct: 60  SVRVELREQLPGLAESPLRIHLGQGLSRGERMDWAIQKATELGVAEITPLLSERCEVRLK 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +   +   ISA EQC    LP I+PP  LE  LK  +   ++V          
Sbjct: 120 DERADKRLAHWQQIAISACEQCGRSVLPTIHPPAPLEDWLKGIEAELKLVLHPFA----- 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L + A   ++A LIGPEGG    E +            LGPR+LR++TA V A+++
Sbjct: 175 --EPLASHARPASLAFLIGPEGGLSETEVDA-ARRAGYRAARLGPRVLRTETAPVVALSV 231

Query: 237 VQAICGDW 244
            Q + GD+
Sbjct: 232 AQQLWGDF 239


>gi|150395613|ref|YP_001326080.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium medicae
           WSM419]
 gi|150027128|gb|ABR59245.1| protein of unknown function DUF558 [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 149/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV+ PL      +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++IS 
Sbjct: 1   MRANFRMQRLFVESPLHNGASHQATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEISM 60

Query: 61  VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             +     V   Q+R Q    D+ Y+F+P+KT RLDY++QK+VEMG G ++PVIT++ Q 
Sbjct: 61  PSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVITQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              +++R+R   I AAEQC +L +P +  P  LE LL  W  + +IVF DE   S+N L 
Sbjct: 121 KIGSLERIRANAIEAAEQCGVLGIPAVEEPRRLEDLLAAWPRDRRIVFCDEGNESQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L+ +A    +A+LIGPEGG+   E++ L SL FVT + LGPRILR
Sbjct: 181 ILNELAEH-RLALLIGPEGGFSETERDLLRSLDFVTAIPLGPRILR 225


>gi|85714212|ref|ZP_01045200.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A]
 gi|85698659|gb|EAQ36528.1| hypothetical protein NB311A_14712 [Nitrobacter sp. Nb-311A]
          Length = 256

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/243 (42%), Positives = 148/243 (60%), Gaps = 1/243 (0%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           I     RL+VD PL    +   + +Q +YL +VLR+  G N+L+FNG+DGEW + I    
Sbjct: 11  IDFRSPRLYVDAPLAAGCRIPLNRNQGNYLGNVLRLGTGTNVLVFNGRDGEWRAAIFGRK 70

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           +    ++   +R Q +  DV+Y F+P+K  RLDYM+QK+VEMG+ A++P++TR+TQ    
Sbjct: 71  RLENLEIVAATRKQDQLPDVRYAFAPLKHARLDYMVQKAVEMGVCALQPLLTRFTQVGRV 130

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N +R+R   I AAEQC IL+L  +  P +L+  L        +VF DE   + N L  L 
Sbjct: 131 NGERMRANVIEAAEQCGILSLAAVEEPASLDQWLGRRGPERLLVFCDEAASTANPLRTLE 190

Query: 183 AIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               +   + +L+GPEGG+  +E+  L   P V  LSLGPRILR+DTAAVA +ALVQ + 
Sbjct: 191 PARRVAQGIDVLVGPEGGFAEDERVNLLKQPNVLRLSLGPRILRADTAAVAVLALVQTVL 250

Query: 242 GDW 244
           GDW
Sbjct: 251 GDW 253


>gi|52424293|ref|YP_087430.1| hypothetical protein MS0238 [Mannheimia succiniciproducens MBEL55E]
 gi|52306345|gb|AAU36845.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 243

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L      + + +  +++  VLRM+ G+ + LF+G +  + + I    K  
Sbjct: 2   RIPRIYHPDSLTNIKTCRLTDEAANHVGRVLRMQAGERLELFDGSNHVYTAVILQADKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   +   ++S ++     +  +  R+++ +QKSVE+G+  I P+ +         
Sbjct: 62  VTAEIRDCQLDDRESHLKIHLGQVISRGERMEFTVQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ++A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAVAACEQCGRNIVPEIRPMMKLQDWCAEQDGMLKLNLHPRAKYSIQT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG   +E        F T + LG R+LR++TA++ A+  +
Sbjct: 182 LPDIPA----EGVRLLIGSEGGLSPQEIAQTERQGF-TEVLLGKRVLRTETASLVAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QLCFGD 242


>gi|296104610|ref|YP_003614756.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059069|gb|ADF63807.1| 16S ribosomal RNA methyltransferase RsmE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 243

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    +    +   S D  +++  VLRM  G  I LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPELITAGREIALSDDAANHVGRVLRMGAGQAIQLFDGSNQVFDAEITRADKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VHVNVLRGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +  +  + + +   I+A EQ     +P I P   LE      +   ++        S N+
Sbjct: 122 ERLNKKIQQWQKIAIAACEQSGRNRIPEIRPAMDLEDWCAEEESGLKLNLHPRASASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|307245046|ref|ZP_07527140.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854034|gb|EFM86245.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 243

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +T    S D  +++  VLRM EG+ I+LF+G +  + + +  VGK  
Sbjct: 2   RIPRIYHPELLANRTDCILSEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IIAKIDGSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG  +EE E   +  F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPNV----PEAGVRLLIGSEGGLSAEEIEMTETQGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|319782233|ref|YP_004141709.1| hypothetical protein Mesci_2516 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168121|gb|ADV11659.1| protein of unknown function DUF558 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 244

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 141/226 (62%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   L    + +A   Q HYL HVLR+ EG  IL+FNG+DGEW + IS 
Sbjct: 1   MRANYKMQRLFVTDDLAPDIEFEAGQQQSHYLLHVLRLGEGAEILVFNGRDGEWSAAISA 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              +++R KV    R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ 
Sbjct: 61  KTKRAVRLKVSALQRPQPPLPDLVYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++DR+R   + AAEQC IL +P +      + LL  WD   +++F DE   + N L 
Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPQVREAEKFDRLLTGWDTERRLIFCDEDASTNNPLA 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L A+     + +L+GPEGG+  +E++ L +LPFVT + LGPRILR
Sbjct: 181 ALQAVKE-KKLGLLVGPEGGFSDDERKMLRALPFVTAIPLGPRILR 225


>gi|241203235|ref|YP_002974331.1| 16S ribosomal RNA methyltransferase RsmE [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857125|gb|ACS54792.1| protein of unknown function DUF558 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/226 (43%), Positives = 147/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ DQ++YLA+VLRM++G  ILLFNG+DGEW + +++
Sbjct: 1   MRANFRMQRLFVDAPLTRGAGVEANADQFNYLANVLRMEDGGEILLFNGRDGEWKATLTF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q +  D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTATEETRPQPQPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   I AAEQC IL +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KVTNLDKLRANVIEAAEQCGILGIPDVAEPVRLLDLLDRWPSERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 VLSAIRE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225


>gi|83859513|ref|ZP_00953034.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852960|gb|EAP90813.1| hypothetical protein OA2633_13950 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 254

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/250 (39%), Positives = 148/250 (59%), Gaps = 13/250 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RL++D PL          DQ HYL +V+R K GD + LFNG+DGEW ++++    K   
Sbjct: 5   PRLYIDAPLEAGAVLDLDRDQAHYLVNVMRRKPGDGVRLFNGRDGEWRAEVASADRKRAS 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            ++  Q RSQ+   D+   F+P+K  R D++++K+ E+G+ +I PVIT+ TQ+     DR
Sbjct: 65  LQIVQQRRSQSATPDMALYFAPVKKARTDFIVEKATELGVASITPVITQRTQSERVRTDR 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----------- 175
           ++  T  A+EQ + L LP I+ P +L  +LK WD    ++FADE+  S+           
Sbjct: 125 MQALTREASEQTERLDLPVIHEPVSLTQMLKGWDEARTLMFADESGDSQTEPWGGEHGRA 184

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E L         A+L+GPEGG+  EE+  LH+  FV P+SLGPRILR+DTAA AA+
Sbjct: 185 RPMAEALAGRERGGKWAMLVGPEGGFSVEERTLLHAQTFVLPVSLGPRILRADTAAAAAL 244

Query: 235 ALVQAICGDW 244
           ++ Q++ GDW
Sbjct: 245 SVWQSMLGDW 254


>gi|254437857|ref|ZP_05051351.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 307]
 gi|198253303|gb|EDY77617.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 307]
          Length = 234

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 6/236 (2%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV 69
           +VD PL  + +   S +Q HYL  V+R+  G ++ LFNG+DGEW + ++   K       
Sbjct: 2   YVDHPLGPQERVALSREQAHYLFGVMRLDVGADVSLFNGRDGEWRALVAAASKKSGVLDC 61

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVR 128
             Q++      D+  +F+PIK +R  ++++K+ E+G   I P+ T YTQ+      DR++
Sbjct: 62  VVQTKPLQMPPDLWLVFAPIKKDRTSFIVEKAAELGAARIVPLQTEYTQSANRVRQDRLQ 121

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + + AAEQC    +P +        +L  W+   +I+F DE    +  +   +A     
Sbjct: 122 AHALEAAEQCGGTYVPEVAELQKFAKMLDTWNPTRRILFCDEAMVDKPLILPTNA----G 177

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             AILIGPEGG+  +E++ L+S+     +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 178 PWAILIGPEGGFSDKERDRLNSMLCAHAISLGPRILRADTAAVAAMTLWQQAMGDW 233


>gi|83644376|ref|YP_432811.1| 16S ribosomal RNA methyltransferase RsmE [Hahella chejuensis KCTC
           2396]
 gi|83632419|gb|ABC28386.1| uncharacterized protein conserved in bacteria [Hahella chejuensis
           KCTC 2396]
          Length = 247

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 19/251 (7%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +    R+F+D PL   +Q   +GDQ +Y+  VLRM+ GD   LF+G   ++  K+  
Sbjct: 1   MRNN----RIFIDQPLDGLSQLTLTGDQANYVGRVLRMRPGDAFHLFSGDGRDFPVKVLA 56

Query: 61  VGKSIRFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           VG+        +           V       +  R+DY +QKS EMG+ A+ P+++    
Sbjct: 57  VGRRDVEVALSEPLAIEAESPLRVHLGQVLSRGERMDYAVQKSTEMGVTALTPLLSERCE 116

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                +         R  +ISA EQC    +P I   T LE  L++   + +++      
Sbjct: 117 VRLDGERQDKRWRHWRQVSISACEQCGRARVPDIGDVTPLESWLQSATADLKLILHP--- 173

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                           +V +LIGPEGG+  EE        FV    LGPRILR++TA VA
Sbjct: 174 ---GDARAWSPAQPPASVCLLIGPEGGFTDEEVALAERHGFVHA-PLGPRILRTETAPVA 229

Query: 233 AMALVQAICGD 243
           A+AL+Q + GD
Sbjct: 230 ALALMQWLWGD 240


>gi|157377104|ref|YP_001475704.1| hypothetical protein Ssed_3972 [Shewanella sediminis HAW-EB3]
 gi|157319478|gb|ABV38576.1| protein of unknown function DUF558 [Shewanella sediminis HAW-EB3]
          Length = 243

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++      +        +   ++  VLRM  G+ + LFNG   E+L++I    K  
Sbjct: 2   RIPRIYQASTFTVGMSVALDDEAASHVGRVLRMSSGEQVSLFNGDGNEYLAQIESASKKN 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S +   +S +      +  + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VQVTILSSVANESESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I A EQ     +P + P  +LE        + ++            
Sbjct: 122 ERLEKKIHQWQKIVIGACEQSGRSLVPQVRPAMSLEAWSAEQTDSLKLNLHPRAAHGIGG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L         P V +LIGPEGG    E        F T + LGPR+LR++TAA+ A++ +
Sbjct: 182 LTL-----PEPRVRLLIGPEGGLSETEILMTEQHAF-TDVLLGPRVLRTETAALTAISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|127514152|ref|YP_001095349.1| hypothetical protein Shew_3224 [Shewanella loihica PV-4]
 gi|126639447|gb|ABO25090.1| protein of unknown function DUF558 [Shewanella loihica PV-4]
          Length = 243

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++      +  Q     +   ++  VLRM  G+ + LFNG    +L++I    K  
Sbjct: 2   RIPRIYQLGNYDLNQQLMLDEEAAGHVGRVLRMGAGEQLELFNGDGHNYLTEIVTASKKN 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V  +  +  +   ++       + +R+D+ +QKSVE+G+  I P+ +         
Sbjct: 62  VEVRVLSKEANDNESPLNLHLGQVISRGDRMDFTLQKSVELGVNTITPLFSERCGVKLTG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQ    T+P + P   L+          ++          N 
Sbjct: 122 ERLEKKIQQWQKIVISACEQSGRSTVPEVRPAMQLDDWCGEATQALKLNLHPRADHGING 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     +   P V +LIGPEGG   +E     +  F T + LGPR+LR++TAA+ A++ +
Sbjct: 182 L-----VMETPRVRLLIGPEGGLSPQEIAMTETHAF-TDVLLGPRVLRTETAALTAISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|271502142|ref|YP_003335168.1| hypothetical protein Dd586_3632 [Dickeya dadantii Ech586]
 gi|270345697|gb|ACZ78462.1| protein of unknown function DUF558 [Dickeya dadantii Ech586]
          Length = 244

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L     +   S D  +++  VLRM  G  + LF+G +  + ++I   GK 
Sbjct: 2   RIPRIFHPDTLAPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFEAEIVQAGKK 61

Query: 65  -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R +    Q+  +     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVRYATGQTEDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC    +P I P  TLE      D+  ++          N
Sbjct: 122 GERLEKKIAQWQKIAIAACEQCGRNRVPDIRPVQTLESWCAESDNGLKLNLHPRASQHIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  + +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  
Sbjct: 182 TLPL-----PVSRIRLLIGPEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|260462657|ref|ZP_05810863.1| protein of unknown function DUF558 [Mesorhizobium opportunistum
           WSM2075]
 gi|259031563|gb|EEW32833.1| protein of unknown function DUF558 [Mesorhizobium opportunistum
           WSM2075]
          Length = 273

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 140/226 (61%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   L    +  A   Q HYL HVLR+ EG  IL+FNG+DGEW + I+ 
Sbjct: 30  MRANYKMQRLFVPDDLAGDAEFDAGQQQSHYLMHVLRLGEGAEILVFNGRDGEWSAAIAA 89

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              +++R KV    R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ 
Sbjct: 90  KTKRAVRLKVLALQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 149

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++DR+R   + AAEQC IL +P +      E +L  WD   +++F DE   + N L 
Sbjct: 150 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERVLTGWDKGRRLIFCDEDASTNNPLP 209

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI     + +L+GPEGG+  EE++ L +LPFV+ + LGPRILR
Sbjct: 210 ALQAIRE-KKLGLLVGPEGGFSDEERKMLRALPFVSAIPLGPRILR 254


>gi|260427823|ref|ZP_05781802.1| surface protein [Citreicella sp. SE45]
 gi|260422315|gb|EEX15566.1| surface protein [Citreicella sp. SE45]
          Length = 269

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 140/245 (57%), Gaps = 4/245 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +++ +   RLFVD PL        + +Q HYL  V+R+  G  ILLFNG+DGEWL +++ 
Sbjct: 27  VRLMTAKVRLFVDHPLGAGQPVPLTREQAHYLFSVMRLGAGAPILLFNGRDGEWLCEVTE 86

Query: 61  VGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK       + Q+R Q    D+  +F+PIK  R D++++K+VE+G+  + PV T++T +
Sbjct: 87  AGKRGGEAVCDTQTRPQQMPPDLWLLFAPIKKARTDFIVEKAVELGVRRLLPVQTQFTNS 146

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR++ + + AAEQC  L +P +     L+ LL +W     ++F DE      +  
Sbjct: 147 ERIRQDRLQAHAVEAAEQCGALFVPEVAELARLDRLLADWPAGRALLFCDEAEAGSRAAA 206

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              A A     A+LIGPEGG+   E+  L ++     ++LGPRILR+DTA V+A+ L Q 
Sbjct: 207 LDAAPAPA---AVLIGPEGGFADAERARLGAMDETRVIALGPRILRADTATVSAITLWQV 263

Query: 240 ICGDW 244
            CGDW
Sbjct: 264 ACGDW 268


>gi|83854893|ref|ZP_00948423.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1]
 gi|83842736|gb|EAP81903.1| hypothetical protein NAS141_09196 [Sulfitobacter sp. NAS-14.1]
          Length = 240

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 5/243 (2%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ + RL+VD PL           Q HYL  V+R   G ++LLFNG DGEW ++++  G
Sbjct: 1   MNAKI-RLYVDHPLGQGQSVPLDKAQAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAG 59

Query: 63  KSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
           K         Q++      D+  IF+PIK  R D++++K+ EMG   I PV + +T    
Sbjct: 60  KRGGVLVCAEQTKPLQMPPDLWLIFAPIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGR 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
              DR++ + + AAEQC    +P +     L+ L+  W+    ++F DE    E   E+ 
Sbjct: 120 VQRDRLQAHAVEAAEQCGGTFVPEVADMVRLDRLIDRWEPERSLMFCDEALAGE---EEG 176

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            A A     AILIGPEGG+   E+  L  L +  P++LGPRILR+DTAAVAAM L Q   
Sbjct: 177 LASARPGPWAILIGPEGGFSDSERVRLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTL 236

Query: 242 GDW 244
           GDW
Sbjct: 237 GDW 239


>gi|68248905|ref|YP_248017.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae
           86-028NP]
 gi|68057104|gb|AAX87357.1| conserved hypothetical RNA methyltransferase [Haemophilus
           influenzae 86-028NP]
          Length = 245

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDT 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|86146407|ref|ZP_01064731.1| hypothetical protein MED222_22541 [Vibrio sp. MED222]
 gi|85835886|gb|EAQ54020.1| hypothetical protein MED222_22541 [Vibrio sp. MED222]
          Length = 243

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     +          D   ++  VLRMKEG +ILLF+G   E+ + I+ V K  
Sbjct: 2   RIPRIHHPERIHQLGSLALGEDAAGHVGRVLRMKEGQDILLFDGSGAEFPATIAEVSKKN 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E   RS     D+       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDT 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ    T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAIAACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      I  V +LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PISKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|251788143|ref|YP_003002864.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya zeae Ech1591]
 gi|247536764|gb|ACT05385.1| protein of unknown function DUF558 [Dickeya zeae Ech1591]
          Length = 244

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   +   S D  +++  VLRM  G  + LF+G +  + ++I   GK 
Sbjct: 2   RIPRIFHPDTLALLGGEMDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIIQAGKK 61

Query: 65  -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R +    Q+ ++     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVRYAAGQTENRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNIITPLLSERCGIKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC    +P I P  TLE      D+  ++        S N
Sbjct: 122 GERLEKKISQWQKIAIAACEQCGRNRVPEIRPVQTLESWCAESDNGLKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  + +LIGPEGG  ++E     +  F T + LGPR+LR++T A+ A+  
Sbjct: 182 TLPL-----PVSRIRLLIGPEGGLSADEIAMTATQGF-TDILLGPRVLRTETTALTAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|145638791|ref|ZP_01794400.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII]
 gi|145272386|gb|EDK12294.1| hypothetical protein CGSHiII_08751 [Haemophilus influenzae PittII]
 gi|309750281|gb|ADO80265.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2866]
          Length = 245

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ I LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQIELFDGSNHIYPAKIIESNKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                       K+S ++     +  +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGREVADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|319898419|ref|YP_004158512.1| hypothetical protein BARCL_0241 [Bartonella clarridgeiae 73]
 gi|319402383|emb|CBI75922.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 240

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 111/229 (48%), Positives = 144/229 (62%), Gaps = 2/229 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+++  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+++
Sbjct: 1   MRVNYKLKRLFVRQLLALNKEIVIEGQQASYLMHVLRMKEGAKILLFNGQDGEWLAKLTF 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++  Q R QTK SD+ Y F+P+K  RLDYMIQK+VEMG   + P+IT YTQ 
Sbjct: 61  IKKKFVVVRLINQERLQTKSSDLFYCFAPLKYMRLDYMIQKAVEMGASVLHPIITHYTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I AAEQC IL+LP   P   L+  L+NWD    + F DE   S N++ 
Sbjct: 121 TRINMARIEANIIEAAEQCGILSLPKCAPAVPLKTFLENWDETHALFFCDELSESYNTIP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                   P + +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DT
Sbjct: 181 LFKKHRTTP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADT 228


>gi|32034407|ref|ZP_00134589.1| COG1385: Uncharacterized protein conserved in bacteria
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207721|ref|YP_001052946.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus
           pleuropneumoniae L20]
 gi|165975693|ref|YP_001651286.1| 16S ribosomal RNA methyltransferase RsmE [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149504|ref|YP_001968029.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251645|ref|ZP_07337818.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303252796|ref|ZP_07338956.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247218|ref|ZP_07529268.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249446|ref|ZP_07531435.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251763|ref|ZP_07533666.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254000|ref|ZP_07535848.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256261|ref|ZP_07538045.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258455|ref|ZP_07540193.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262823|ref|ZP_07544448.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126096513|gb|ABN73341.1| hypothetical protein APL_0233 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875794|gb|ABY68842.1| hypothetical protein APJL_0238 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914635|gb|ACE60887.1| hypothetical protein APP7_0235 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648357|gb|EFL78553.1| hypothetical protein APP2_0384 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649487|gb|EFL79670.1| hypothetical protein APP6_0849 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306856276|gb|EFM88429.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858520|gb|EFM90587.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860764|gb|EFM92774.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863026|gb|EFM94972.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865225|gb|EFM97124.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867460|gb|EFM99310.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871838|gb|EFN03557.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 243

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +T    S D  +++  VLRM EG+ I+LF+G +  + + +  VGK  
Sbjct: 2   RIPRIYHPELLANRTDCILSEDATNHVGRVLRMTEGEQIILFDGSNHIFHATLQAVGKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IIAKIDGSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG  +EE     +  F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPNV----PEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|289578110|ref|YP_003476737.1| hypothetical protein Thit_0897 [Thermoanaerobacter italicus Ab9]
 gi|289527823|gb|ADD02175.1| protein of unknown function DUF558 [Thermoanaerobacter italicus
           Ab9]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           +++ FVD     +      G   H++ +VLR+K+GD I++ +G   E+ + I  V K  +
Sbjct: 1   MRKFFVDKEKIKENFAYIEGKDTHHIINVLRLKKGDEIVISDGS-TEYQTSIYGVEKNRV 59

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E + +S T+ S  +       K+++++ +IQK  E+G+    P+ITRY+       
Sbjct: 60  ILFLESKLQSNTESSIEIALFQGLPKSDKMELIIQKCTEIGVKKFIPIITRYSVVDIKNS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  ++R    +  A +Q    +LP I  P +    LK  +     +   E   +    
Sbjct: 120 NLNKKIERWNKISREACKQSGRTSLPEICMPISFGEALKRIEEFDLCIIPYEKEKTLKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L  + +I  VAI +GPEGG+  EE +          +SLGPRILR++TAA++  ++V 
Sbjct: 180 EVLDGVKNIKKVAIFVGPEGGFSEEEVDLALRYS-AKLVSLGPRILRTETAAISVCSIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YELGD 243


>gi|309972536|gb|ADO95737.1| 16S rRNA m3U1498 methyltransferase [Haemophilus influenzae R2846]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|86356450|ref|YP_468342.1| hypothetical protein RHE_CH00804 [Rhizobium etli CFN 42]
 gi|86280552|gb|ABC89615.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV  PL      +A+ DQ++YLA+VLRM++G  ILLFNG+DGEW + +S+
Sbjct: 1   MRANFRMQRLFVYAPLSAGAAVEANADQFNYLANVLRMEDGAEILLFNGRDGEWKATLSF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I       +R Q    D+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEATRPQPAPCDLHYLFAPLKVGRLDYLVQKAVEMGAGRLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D++R   + AAEQC +L +P +  P  L  LL  W    +I++ DE    +N L 
Sbjct: 121 KITNLDKLRANVVEAAEQCGVLAIPEVAEPVKLSDLLDRWPSERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 VLAAIQE-RHLALLVGPEGGFSEEERARLRSLDFVTAIPLGPRILR 225


>gi|167644342|ref|YP_001682005.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter sp. K31]
 gi|167346772|gb|ABZ69507.1| protein of unknown function DUF558 [Caulobacter sp. K31]
          Length = 238

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 136/239 (56%), Gaps = 3/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + RLFV  PL +      + DQ  YL  V+R+  GD IL+FNG+DGEW   ++  GK   
Sbjct: 1   MIRLFVPHPLKVGAGVAPTVDQSRYLTAVMRLNVGDEILVFNGQDGEWRCGLTEAGKRGC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             + E Q+R Q    D+  + + +K  R++ +++K+ E+G   +R   TR T      + 
Sbjct: 61  LLRCEEQTREQDHAPDLDLVVAMVKRGRVETIVEKAAELGARRVRLTQTRRTNVDFLKLG 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+    I AAEQ   L +P I  P  L+ +L  WD   ++VF DE   +   +E +    
Sbjct: 121 RLDAIAIEAAEQTGRLDVPVIDDPMKLDKILDTWDPARRLVFCDEGGDARTMIEAVTGTG 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AILIGPEGG+  EE++ L SLPFV P+SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 181 AP--AAILIGPEGGFAPEERKRLRSLPFVIPVSLGPRILRADTAAIAAMTLWQAAAGDW 237


>gi|148827457|ref|YP_001292210.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae
           PittGG]
 gi|148718699|gb|ABQ99826.1| hypothetical protein CGSHiGG_04330 [Haemophilus influenzae PittGG]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDT 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|145636562|ref|ZP_01792230.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH]
 gi|145270387|gb|EDK10322.1| hypothetical protein CGSHiHH_08792 [Haemophilus influenzae PittHH]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|332799054|ref|YP_004460553.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
           sp. Re1]
 gi|332696789|gb|AEE91246.1| Ribosomal RNA small subunit methyltransferase E [Tepidanaerobacter
           sp. Re1]
          Length = 252

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63
           + R FV   L I  Q   SG+  H++  VLR + GD I + +G + E +  I  +   G 
Sbjct: 1   MSRFFVFQDLNINDQITISGEDAHHIIRVLRYQTGDVIHISDGANTESIGVILDIDTQGP 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           S++ K+  +++ ++    +       K  + D+++QK+ E+G+    P+IT+ T      
Sbjct: 61  SVKLKIIEKNKVESISPYITLFQGLPKGEKFDWILQKNTEIGVSEFIPIITQRTVVNISP 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--- 174
               +  +R       AA+QC  + +P I    + +  L+        +   E       
Sbjct: 121 SKLGHRKNRWGKIVKEAAKQCMRMDIPKIGDVLSFDLALQEIKKYSLCIIPWENEKEISI 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            + ++ ++    I  +A+ IG EGG+  +E E   +   V P+SLGPRILR++TA + A 
Sbjct: 181 RHIIKDMNENKSISKIAVFIGSEGGFSKDEVEKAKAAGAV-PVSLGPRILRTETAGIVAC 239

Query: 235 ALVQAICGD 243
           +++    GD
Sbjct: 240 SVLMYEIGD 248


>gi|218528889|ref|YP_002419705.1| hypothetical protein Mchl_0859 [Methylobacterium chloromethanicum
           CM4]
 gi|218521192|gb|ACK81777.1| protein of unknown function DUF558 [Methylobacterium
           chloromethanicum CM4]
          Length = 250

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 148/240 (61%), Gaps = 4/240 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW ++I   G KS  
Sbjct: 9   PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR
Sbjct: 69  LRVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           ++   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L   A 
Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEEASVTDPVAALRGAAD 188

Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 189 PASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|240137404|ref|YP_002961875.1| hypothetical protein MexAM1_META1p0669 [Methylobacterium extorquens
           AM1]
 gi|240007372|gb|ACS38598.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 250

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 4/240 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW ++I   G KS  
Sbjct: 9   PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR
Sbjct: 69  LRVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-- 184
           ++   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L     
Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVAALRGAAD 188

Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A+ P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 189 PANPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|145634697|ref|ZP_01790406.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA]
 gi|145268242|gb|EDK08237.1| hypothetical protein CGSHiAA_05711 [Haemophilus influenzae PittAA]
          Length = 245

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPDIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|145632547|ref|ZP_01788281.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655]
 gi|144986742|gb|EDJ93294.1| hypothetical protein CGSHi3655_01994 [Haemophilus influenzae 3655]
          Length = 245

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|145640243|ref|ZP_01795827.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae
           R3021]
 gi|145274829|gb|EDK14691.1| hypothetical protein CGSHiR3021_09300 [Haemophilus influenzae
           22.4-21]
          Length = 245

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCHLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|251793469|ref|YP_003008198.1| 16S ribosomal RNA methyltransferase RsmE [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534865|gb|ACS98111.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
          Length = 244

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   T    S D  +++  VLRM  G+++ LF+G +  + + I+ VGK  
Sbjct: 2   RVPRIYHPTALNHLTFCTLSEDGANHVGRVLRMLPGEHLELFDGTNHIYQAVITQVGKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   +   ++S +      +  +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VDVEILSQQFDDRESPLSIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 DRMEKKIQQWQKIAIAACEQCGRNKIPEIRPLMKLQQWCAEQDDTLKLNLHPRATHSIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG   +E        FV  + LG R+LR++TAA+AA+  +
Sbjct: 182 LPAIPAA----GVRLLIGSEGGLSPQEIAQTEQQGFVE-VLLGKRVLRTETAAMAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|16272258|ref|NP_438470.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae Rd
           KW20]
 gi|260581228|ref|ZP_05849047.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae RdAW]
 gi|1176097|sp|P44627|RSME_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|1573272|gb|AAC21968.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092153|gb|EEW76097.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae RdAW]
          Length = 245

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|71280059|ref|YP_267997.1| 16S ribosomal RNA methyltransferase RsmE [Colwellia psychrerythraea
           34H]
 gi|71145799|gb|AAZ26272.1| conserved hypothetical protein TIGR00046 [Colwellia psychrerythraea
           34H]
          Length = 244

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-I 65
            R+F      +      S D + ++  VLR+KEGD I LFNG++   + + +  V K   
Sbjct: 4   PRIFQQSQFALNETVPLSDDAFGHVVRVLRLKEGDTITLFNGEEAFQYTATLCNVSKKSA 63

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             KV  Q  + ++   ++       + +R+D+ +QKSVE+G+  I P+ T         +
Sbjct: 64  DVKVTSQEENNSESPLNIHLGQGISRGDRMDFTLQKSVELGVNTITPLFTERCGVKLNAE 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  + +   ISA EQ    ++P +  P  L   LK      +I    +   S  SL
Sbjct: 124 RLEKKRQQWQKIVISACEQSGRASVPIVAEPMLLADWLKQETSALKINLHPKAQHSIMSL 183

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                      V +LIGPEGG   EE    +   F   + LGPR+LR++TAA+ A+  +Q
Sbjct: 184 PM-----ENTRVRLLIGPEGGLSDEEITQANDSDF-HDVLLGPRVLRTETAALTAITALQ 237

Query: 239 AICGDWY 245
              GD +
Sbjct: 238 CRFGDLH 244


>gi|84394071|ref|ZP_00992807.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01]
 gi|84375313|gb|EAP92224.1| hypothetical protein V12B01_07800 [Vibrio splendidus 12B01]
          Length = 243

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+     +          D   ++  VLRMKEG ++LLF+G   E+ + I+ V K  
Sbjct: 2   RIPRIHHPERIHQLGSLALGEDAAGHVGRVLRMKEGQDVLLFDGSGAEFPATIAEVSKKN 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E   RS     D+       + +++++ IQKSVE+G   I P+I+         
Sbjct: 62  VTVNVTERIERSSESPLDLHLGQVISRGDKMEFTIQKSVELGANTITPLISERCGVKLDT 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQ    T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAIAACEQSGRNTVPVIRPIMQLEEWCSEPSEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L +      +  V +LIGPEGG  +EE        F   L LGPR+LR++TAA+ A+  +
Sbjct: 182 LPE-----PVSKVRLLIGPEGGLSAEEIGMTEQYKFEETL-LGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|227820965|ref|YP_002824935.1| 16S ribosomal RNA methyltransferase RsmE [Sinorhizobium fredii
           NGR234]
 gi|227339964|gb|ACP24182.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 103/226 (45%), Positives = 148/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV+ PL    + +A+ DQ++YL +VLR  EG +IL+FNG+DGEW +++S 
Sbjct: 1   MRANFRMQRLFVESPLHAGARHEATKDQFNYLINVLRFGEGSSILVFNGRDGEWRAELSL 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K +      Q+R Q   SD+ Y+F+P+KT RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKQLVLTAVEQTRPQPAPSDLVYLFAPLKTGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+DR+R     AAEQC +L +P +  P  LE LL NW    +I+F DE   S+N L 
Sbjct: 121 KLGNLDRLRANVTEAAEQCGVLGIPSVETPRKLEELLANWPRERRIIFCDEGNESQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L  I+    +A+LIGPEGG+   E+  LHSL FVT + LGPRILR
Sbjct: 181 ILGGISE-RRLALLIGPEGGFSEAERVLLHSLDFVTAVPLGPRILR 225


>gi|153010322|ref|YP_001371536.1| hypothetical protein Oant_2999 [Ochrobactrum anthropi ATCC 49188]
 gi|151562210|gb|ABS15707.1| protein of unknown function DUF558 [Ochrobactrum anthropi ATCC
           49188]
          Length = 248

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 152/255 (59%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L    Q + +    HYL HVLR+K+GD IL FNG+ GEW S++  
Sbjct: 1   MRANYKMQRLYVENDLDDGDQIEVAPQAAHYLTHVLRLKDGDEILAFNGRHGEWKSRLKP 60

Query: 61  VGKSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK   F +   Q+R Q   SD+ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGKKRLFLMPFEQTRPQPLASDLVYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR++   I AAEQC +L++P        +  ++ WD +  ++F DE   S++ L 
Sbjct: 121 PRLGADRIKANAIEAAEQCGVLSIPECCEAIRFDRFIEQWDKSRHLIFCDEGYESDDPLT 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +A  P VA+LIGPEGG+  +E++TL +LPFVT + LGPRILR              
Sbjct: 181 ILQKMAPGP-VALLIGPEGGFSEDERQTLRNLPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQ++ GDW
Sbjct: 236 ------LVQSVLGDW 244


>gi|238897814|ref|YP_002923493.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465571|gb|ACQ67345.1| 16S rRNA methyltransferase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 243

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++  +P    TQ + S +  H++  VLRMK G ++ LF+  +    + I  + K  
Sbjct: 2   RIPRIYHPYPFFAHTQIELSEEAAHHVIRVLRMKPGQSLYLFHDSNDIIQANIIRIDKKK 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +    E   ++      +       ++ +++Y +QKSVE+G+ ++ P+ +         
Sbjct: 62  VYVQLKEAILKNNESPLYLHLGQVICRSEKMEYTLQKSVELGVHSVTPLFSERCGVKIDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P IY    L     + D++ ++ F  +     N+
Sbjct: 122 ERLQKKIQQWKKIAISACEQCGRNKIPKIYNALPLHNWCAHQDNSLKLNFVPKANNRINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     I  +  V ILIGPEGG  ++E        F+ P+SLGPR+LR++T A+ A+  +
Sbjct: 182 L-----IPPVSRVRILIGPEGGLSNDEIAMAADYEFL-PISLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|152977886|ref|YP_001343515.1| hypothetical protein Asuc_0200 [Actinobacillus succinogenes 130Z]
 gi|150839609|gb|ABR73580.1| protein of unknown function DUF558 [Actinobacillus succinogenes
           130Z]
          Length = 243

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  ++  + S +  +++  VLRM+ G+ + LF+G +  + + IS   K  
Sbjct: 2   RVPRIYHPESLLNQSSCRLSEEAANHVGRVLRMQAGEALELFDGSNHIYPAVISRADKKT 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +  S  ++S +      +  +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VTVNIRERISDDRESPLAIHLGQVISRGERMEFTIQKSVELGVKVITPLWSERCGVKLEG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   +SA EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 DRLAKKIRQWQKIAVSACEQCGRNVIPQIRPMMKLQDWCAENDGALKLNLHPRAQYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      + +LIG EGG   +E        F T + LG RILR++TAA+ A+  +
Sbjct: 182 LPTIPA----EGIRLLIGSEGGLSPQEIALTEQQGF-TEILLGKRILRTETAALTAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|320116218|ref|YP_004186377.1| hypothetical protein Thebr_1425 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|319929309|gb|ADV79994.1| protein of unknown function DUF558 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 245

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++++F+D            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K  +
Sbjct: 1   MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E +  S T+ + ++       K+++++ +IQK  E+G+    PV+TRYT       
Sbjct: 60  ILFLERELESNTESALEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  + R R  +  A +Q     +P I  P + E  +   D     +   E   +    
Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L     +  + I IGPEGG+  EE E   +   + P+SLGPRILR++TAA+A  ++V 
Sbjct: 180 EVLKKAKGVKKIGIFIGPEGGFSQEEIELALNKS-IKPVSLGPRILRTETAAIAVCSIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YELGD 243


>gi|301169013|emb|CBW28610.1| predicted protein [Haemophilus influenzae 10810]
          Length = 245

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|254486640|ref|ZP_05099845.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101]
 gi|214043509|gb|EEB84147.1| conserved hypothetical protein TIGR00046 [Roseobacter sp. GAI101]
          Length = 240

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 5/243 (2%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ + RL+V+  L           Q HYL  V+R   G  +LLFNGKDGEW +++   G
Sbjct: 1   MNAKI-RLYVEHGLGQGQSVPLDKAQAHYLFGVMRQAVGAAVLLFNGKDGEWRAEVVEAG 59

Query: 63  KSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
           K     +   Q++      D+  IF+PIK  R D++++K+ EMG   I PV T +T    
Sbjct: 60  KRGGVLQCVAQTKPLQMPPDLWLIFAPIKKTRTDFIVEKAAEMGARRIVPVQTDFTNAGR 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
              DR++ + + AAEQC    +  +     L+ L+  WD    ++F DE        + +
Sbjct: 120 VQRDRLQAHAVEAAEQCGATFVAEVTEMVKLDRLIDQWDAGRSLMFCDEALAGS---DAV 176

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +      ILIGPEGG+   E+  L  L +   ++LGPRILR+DTAAVAAM + Q   
Sbjct: 177 LGQSGRGAWGILIGPEGGFSDRERSRLRGLEYARSVTLGPRILRADTAAVAAMTVWQQAF 236

Query: 242 GDW 244
           GDW
Sbjct: 237 GDW 239


>gi|103487756|ref|YP_617317.1| 16S ribosomal RNA methyltransferase RsmE [Sphingopyxis alaskensis
           RB2256]
 gi|98977833|gb|ABF53984.1| protein of unknown function DUF558 [Sphingopyxis alaskensis RB2256]
          Length = 249

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 6/238 (2%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
            RLF+D PL   +     G   HYL  V+R+K GD +LLF+ + GEWL+ ++   K S+ 
Sbjct: 13  PRLFIDQPLGAGSAPVIDGAAAHYLLGVMRLKAGDPVLLFDNRSGEWLAVVADAAKRSVT 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            ++E   R      D+   F+P+K  RLD++I+K+ E+G+  ++PV+T  T       +R
Sbjct: 73  LRIERHMRDIEAVPDLWLCFAPVKKARLDWIIEKATELGVRRLQPVMTERTIVERVRRER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I A EQC    LP +  P  L  LLK W     ++FADE  G       +  +A 
Sbjct: 133 LEAQIIEACEQCGRTALPALAEPVKLPQLLKAWPAERALLFADEAGGV-----PMARLAA 187

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AIL GPEGG+   E+  L + P V  L+LGPRILR++TAA+AA +L  A  GDW
Sbjct: 188 PAPAAILTGPEGGFTDRERALLAAHPAVHRLALGPRILRAETAAIAATSLWMAQHGDW 245


>gi|15603733|ref|NP_246807.1| hypothetical protein PM1868 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722296|gb|AAK03952.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 244

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L      + S D  +++  VLRM+ GD ++LF+G +  + ++I+ + K  
Sbjct: 2   RIPRIYHPVLLQGVKHCELSEDAANHVGRVLRMQAGDKLVLFDGSNHVYDAQITQISKKH 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 Q +   ++S ++     +  +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VEVDILQHQWDDRESPLKIHLGQVISRGERMEFTIQKSVELGVHVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   ++A EQC    +P I P   L+      D   ++        S  +
Sbjct: 122 DRLEKKIQQWQKIAVAACEQCGRNVVPEIRPMMKLQDWCAEKDGALKLNLHPRAQYSIRT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F+  + LG R+LR++TA++AA+  +
Sbjct: 182 LPDIPAA----GVRLLIGSEGGLSAQEIAQTEQQDFIE-VLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|294142457|ref|YP_003558435.1| hypothetical protein SVI_3686 [Shewanella violacea DSS12]
 gi|293328926|dbj|BAJ03657.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 242

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++ D PL +        +   ++  VLRM +G+ I LFNG + ++L++I    K  
Sbjct: 2   RIPRIYQDSPLAVGDTLALHDEAASHIGRVLRMSQGEQISLFNGSEHDYLAEIISASKKN 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  K+      S      +       + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 62  VSVKILSSSINSSESPLHIHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I A EQ     +P I P  +LE        + ++            
Sbjct: 122 ERLEKKIHQWQKIVIGACEQSGRSRVPEIRPAMSLEAWCGEQTDSLKLNLHPRASHGIQG 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +P V +LIGPEGG    E        F T + LGPR+LR++TAA+ A++ +
Sbjct: 182 LSL-----DVPKVRLLIGPEGGLSETEILKTEQDKF-TDILLGPRVLRTETAALTAISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QLKFGD 241


>gi|56461316|ref|YP_156597.1| 16S ribosomal RNA methyltransferase RsmE [Idiomarina loihiensis
           L2TR]
 gi|56180326|gb|AAV83048.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
          Length = 243

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    + ++ + + S D + +L  VLR+  GD+I+LFNG    + +KI+ V K  
Sbjct: 2   RVPRIYHPASISLQNETELSADAFQHLIKVLRLNVGDSIVLFNGDGQNYEAKITSVQKKS 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              V   S++   +S V    + +  + +R+D+++QKSVE+G+  I P+ +         
Sbjct: 62  AQFVATSSQANASESPVNIHLAQVVSRGDRMDFVLQKSVELGVTEITPLFSERCGVKLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +    SA EQC    +P + P   L   + +     ++          +S
Sbjct: 122 DRLEKKQLQWQKIVHSACEQCGRSVVPQVKPAQQLTDFIASSFEGLRLTLDPTATQPLSS 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++         + +LIGPEGG+   E      L F  P+ LGPRILR++TAA++A+  V
Sbjct: 182 FQQAE-----KGIQLLIGPEGGFTDTEVSAAGQLGF-KPMRLGPRILRTETAALSALTAV 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QYQFGD 241


>gi|239995591|ref|ZP_04716115.1| hypothetical protein AmacA2_14079 [Alteromonas macleodii ATCC
           27126]
          Length = 242

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            + R++   P+ ++ + + +    H++A VLR+K    I+LFNG   E+ ++I  V  K 
Sbjct: 2   RIPRVYYPNPIPLEQEFELTEGAGHHIATVLRIKPNRPIVLFNGDGNEYSAQIISVQRKK 61

Query: 65  IRFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  + +   S ++     +       K +R+D ++QKSVE+G+  I PVIT         
Sbjct: 62  VTVEADACLSLAKESPLHLHLGQGVSKGDRMDTVLQKSVELGVSEITPVITERCTVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   I A EQ     +P +  P +L   L +  +  ++V A    G+E S
Sbjct: 122 SRWEKKIQQWQKIIIGACEQSGRNIIPALNAPVSLNQWLSSSTNTTRLVLAP---GAEQS 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L       +     +LIGPEGG    E    +   +   +SLGPRILR++TAA+ +++++
Sbjct: 179 LA--RQPYNAQGFRLLIGPEGGLSETEVHQANENGY-QSVSLGPRILRTETAAITSLSIL 235

Query: 238 QAICGDW 244
           QA  GD+
Sbjct: 236 QAQHGDF 242


>gi|302381943|ref|YP_003817766.1| hypothetical protein Bresu_0829 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192571|gb|ADL00143.1| protein of unknown function DUF558 [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 237

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 5/239 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + RL V  PL        + DQ  YL  V+R+K GD++L+FNG+DGEW + +  +  K +
Sbjct: 1   MIRLHVTQPLAPGAAVAPTLDQSRYLTQVMRLKLGDDLLVFNGRDGEWRATLVEILKKGV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             + E Q R Q    D++ I + +K +R++ +++K+ E+G   +R  IT+ T   H  +D
Sbjct: 61  ILRAEDQVRPQAYGPDLELIVAVVKKSRVETIVEKAAELGAARVRLTITQRTNVDHVRLD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+    I AAEQ   L +P +  P  L  LL  WD + +++F DET G+        A+ 
Sbjct: 121 RLDAIAIEAAEQTGRLDVPTVDDPQKLGALLDGWDPSRRLMFCDETGGA----PVASAVT 176

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AILIGPEGG+  EE++ L +LPF T +SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 177 ESGPWAILIGPEGGFSPEERDRLRALPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 235


>gi|291549888|emb|CBL26150.1| RNA methyltransferase, RsmE family [Ruminococcus torques L2-14]
          Length = 255

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           ++  F D       Q + +G   +++ +VLRMK G+ + + +G+  ++   +  Y  K  
Sbjct: 1   MQHFFADPSCVDGEQIRLAGSDVNHMKNVLRMKPGEEVWVSDGEGMDYFCSVEGYEEKEA 60

Query: 66  RFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +V  +  SQT+  S +       K +++++++QK+VE+G   I P   + +      +
Sbjct: 61  VLRVVKKEVSQTELASRLILFQGLPKGDKMEWIVQKAVELGAYRIVPFAAKRSVVKLDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 +R +     AAEQ     +P +    + +  +      +  +V  +   G + +
Sbjct: 121 KAGKKRERWQAIAKGAAEQSKRGIVPQVQDVMSFQEAMNYAKELDVVLVPYELQEGMKAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              +  I    +V I IGPEGG+   E E       + P++LG RILR++TA +  ++++
Sbjct: 181 EAVISKIEPGQSVGIFIGPEGGFDESEIEQAKEAGAI-PITLGKRILRTETAGLTTLSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|261823140|ref|YP_003261246.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium wasabiae
           WPP163]
 gi|261607153|gb|ACX89639.1| protein of unknown function DUF558 [Pectobacterium wasabiae WPP163]
          Length = 244

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   + + S D  +++  VLRM  G ++ LF+G +  + ++I   GK 
Sbjct: 2   RVPRIFHPETLPLNGGEVELSDDAANHVGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKK 61

Query: 65  -IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R  V   +   +     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVSVTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   ++A EQ     +P + P  TLE      D+  ++        S N
Sbjct: 122 AERMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ AM  
Sbjct: 182 TLPL-----PVDRVRLLIGPEGGLTATEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|85708013|ref|ZP_01039079.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1]
 gi|85689547|gb|EAQ29550.1| hypothetical protein NAP1_02220 [Erythrobacter sp. NAP1]
          Length = 253

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 127/238 (53%), Gaps = 4/238 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV+  L         G+Q HYL  V+R+  GD ++L +   GEW +++  V K  + 
Sbjct: 13  PRLFVEDELGDGRIFALEGNQAHYLGKVMRVSPGDTVILCDNITGEWAARVGQVEKRRVD 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V    R + +  D+    + +K +R D++++K+ E+G   I+P+ITR       NM+R
Sbjct: 73  LTVTDHLRPRGEVPDLWLCPALLKKDRFDFVLEKATELGSARIQPMITRRCVADKLNMER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     AAEQC    LP I  P  L+ LL +W     I FADE  G E++ +       
Sbjct: 133 ARIIATEAAEQCARTALPDIAEPVKLDALLADWPSERAIFFADEE-GGEHAADAFCFHEG 191

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AILIGPEGG+   E+  + + P    +SLGPRILR +TAA+AA+++  A  GDW
Sbjct: 192 P--AAILIGPEGGFDDAERAAIRAHPQARAISLGPRILRGETAAIAALSVWMAEAGDW 247


>gi|288957600|ref|YP_003447941.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp.
           B510]
 gi|288909908|dbj|BAI71397.1| ribosomal RNA small subunit methyltransferase [Azospirillum sp.
           B510]
          Length = 259

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/237 (39%), Positives = 134/237 (56%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RL+VD PL          ++ H+L HVLR+  GD + +FNG+DGEW + I   GK     
Sbjct: 8   RLYVDSPLAEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGWCSL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R Q    D+  +F+P+K  R+D++ +K+ EMG+  + PV TR T     N+DR+
Sbjct: 68  TLAEQRREQDTGPDLWLVFAPLKKGRIDFVAEKATEMGVSRLCPVFTRRTDPNRVNLDRL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   + AAEQC+ L++P +     L+  L  W    ++    E   +    E L   A  
Sbjct: 128 RANAVEAAEQCERLSVPDLADALPLDRALAAWPAERRLYLCAEAGAARPIAEVLRDAAAG 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  A+L+GPEGG+   E + L  LPFV P+ LGPRILR+DTA VAA+A  Q++ GDW
Sbjct: 188 P-AALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQSLAGDW 243


>gi|148825417|ref|YP_001290170.1| 16S ribosomal RNA methyltransferase RsmE [Haemophilus influenzae
           PittEE]
 gi|229846392|ref|ZP_04466500.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae
           7P49H1]
 gi|148715577|gb|ABQ97787.1| hypothetical protein CGSHiEE_01535 [Haemophilus influenzae PittEE]
 gi|229810485|gb|EEP46203.1| hypothetical protein CGSHi7P49H1_06965 [Haemophilus influenzae
           7P49H1]
          Length = 245

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCLLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             KVE   R    +     +       +  R+++ IQKSVE+G+  I P+ +        
Sbjct: 61  SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC   ++P I P   L+      D   ++        S  
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIK 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L  + +      V +LIG EGG  ++E        F T + LG R+LR++TA++AA+  
Sbjct: 181 TLPTIPS----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQICFGD 242


>gi|49475195|ref|YP_033236.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1]
 gi|49238000|emb|CAF27205.1| hypothetical protein BH03960 [Bartonella henselae str. Houston-1]
          Length = 247

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/226 (47%), Positives = 142/226 (62%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+  PL I  + K  G Q  Y+ HVLRM+EG  ILLFNG+DGEWL+K+  
Sbjct: 1   MRINYKLKRLFIRQPLVINEKIKIEGPQAFYIVHVLRMQEGAEILLFNGQDGEWLAKLIT 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  ++ +Q R QT  S++ Y F+P+KT RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKKFVVVQLIHQERFQTALSNLIYCFAPLKTARLDYMVQKAVEMGVSVLQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+ +  + A+EQC IL+LP   P  +L  LL  WD    + F DET  S N L 
Sbjct: 121 TRINMARMESNVVEASEQCGILSLPECVPAVSLAELLARWDETQPLFFCDETHKSHNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                  +    ILIGPEGG+  EE+  L   PFV  + LGPRILR
Sbjct: 181 LFKKREMLAP-GILIGPEGGFSQEERSFLKKHPFVISIPLGPRILR 225


>gi|326389861|ref|ZP_08211425.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994129|gb|EGD52557.1| protein of unknown function DUF558 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++++F+D            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K  +
Sbjct: 1   MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E +  S T+ + ++       K+++++ +IQK  E+G+    PV+TRYT       
Sbjct: 60  ILFLERELESNTESALEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  + R R  +  A +Q     +P I  P + E  +   D     +   E   +    
Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFDLCIIPYEKEQTSKLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L     +  + I IGPEGG+  EE E   +   + P+SLGPRILR++TAA+A  ++V 
Sbjct: 180 EVLEKAKGVKKIGIFIGPEGGFSQEEIELALNKS-IKPVSLGPRILRTETAAIAVCSIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YELGD 243


>gi|307260690|ref|ZP_07542380.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869611|gb|EFN01398.1| Ribosomal RNA small subunit methyltransferase E [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 243

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +T    S D  +++  VLRM EG+ I+LF+G +  + + +  VGK  
Sbjct: 2   RIPRIYHPELLANRTDCILSEDATNHVGRVLRMTEGEQIILFDGSNHIFHTTLQAVGKKQ 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S    ++S++      +  + +R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  IIAKIDGSELDNRESNLPIHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLND 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L    K  D   ++        +   
Sbjct: 122 ERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRQ 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +        V +LIG EGG  +EE     +  F T + LG R+LR++TA++AA+  +
Sbjct: 182 LPNV----PEAGVRLLIGSEGGLSAEEIAMTETQGF-TEVLLGKRVLRTETASLAAITAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QVCFGD 242


>gi|182679209|ref|YP_001833355.1| hypothetical protein Bind_2249 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635092|gb|ACB95866.1| protein of unknown function DUF558 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 250

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 143/239 (59%), Gaps = 6/239 (2%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RL++D PL           Q HYL  VLR+  GD+IL+FNG++GEW + +   G K+++
Sbjct: 9   PRLYLDQPLRAGGTVALDKSQAHYLCTVLRLVAGDHILVFNGREGEWRAALKESGRKTVQ 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +   Q R+Q   +D+ Y+F+P+K  RLDYM QK+VEMG   ++P+ TR TQN   N++R
Sbjct: 69  IEPIEQVRTQEPDNDLHYLFAPLKHARLDYMAQKAVEMGASLLQPLFTRRTQNERINLER 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC ILTLP I     L+  L   D N  +VF DE       L  L     
Sbjct: 129 LRANAIEAAEQCGILTLPEIAEAVKLDAYLARRDQNRVLVFCDEDAPPIGPLAALREALR 188

Query: 187 IPNVA-----ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              VA     +LIGPEGG+ + E++ L S P    +SLGPRILR+DTAAVA +ALVQAI
Sbjct: 189 PGGVACRGADVLIGPEGGFDATERDLLVSQPNHIRISLGPRILRADTAAVAVLALVQAI 247


>gi|229845005|ref|ZP_04465142.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae
           6P18H1]
 gi|229812139|gb|EEP47831.1| hypothetical protein CGSHi6P18H1_04607 [Haemophilus influenzae
           6P18H1]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA+++A++ +
Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLSAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|319775828|ref|YP_004138316.1| RNA methyltransferase [Haemophilus influenzae F3047]
 gi|319896636|ref|YP_004134829.1| RNA methyltransferase [Haemophilus influenzae F3031]
 gi|329123672|ref|ZP_08252232.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116]
 gi|317432138|emb|CBY80489.1| conserved hypothetical RNA methyltransferase [Haemophilus
           influenzae F3031]
 gi|317450419|emb|CBY86635.1| conserved hypothetical RNA methyltransferase [Haemophilus
           influenzae F3047]
 gi|327469871|gb|EGF15336.1| 16S rRNA methyltransferase RsmE [Haemophilus aegyptius ATCC 11116]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R+++ IQKSVE+G+  I P+ +         
Sbjct: 62  VKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC   ++P I P   L+      D   ++        S  +
Sbjct: 122 ERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 182 LPTIPA----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 236

Query: 238 QAICGD 243
           Q   GD
Sbjct: 237 QICFGD 242


>gi|212637179|ref|YP_002313704.1| 16S ribosomal RNA methyltransferase RsmE [Shewanella piezotolerans
           WP3]
 gi|212558663|gb|ACJ31117.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 261

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L I        +   ++  VLRM  G+ + LFNG    +L++I    K  
Sbjct: 20  RVPRIYQASSLAIDETVSLHEEAAGHVGRVLRMAAGEQVCLFNGDGNNYLAEILSASKKN 79

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    S   +S +      +  + +R+D+ IQKSVE+G+  I P+ +         
Sbjct: 80  VAVKVLSCESNDSESPLHLHLGQVISRGDRMDFTIQKSVELGVNTITPLFSERCGVKLSG 139

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   +SA EQ     +P I P   L         + +I          N 
Sbjct: 140 ERLEKKIQQWQKIVVSACEQSGRSVVPVIRPAMQLSDWCAEETSSLKINLHPRASHGVNG 199

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           V ++IGPEGG  + E     +  F T + LGPR+LR++TAA+  +  +
Sbjct: 200 L-----CLPNNRVRLVIGPEGGLSATEITMTETHKF-TDVLLGPRVLRTETAALTTITAL 253

Query: 238 QAICGD 243
           Q   GD
Sbjct: 254 QLKFGD 259


>gi|229597123|ref|YP_001609040.2| 16S ribosomal RNA methyltransferase RsmE [Bartonella tribocorum CIP
           105476]
          Length = 247

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+I+  LKRLF+   L +  + K  G Q  YL HVLRMKEG  IL+FNG+DGEWL+K+  
Sbjct: 1   MRINYKLKRLFIRQTLALNEEIKIEGAQASYLMHVLRMKEGAEILIFNGQDGEWLAKLII 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           V K  +  ++ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG   ++PVIT +TQ 
Sbjct: 61  VKKKFVVVQLIHQERLQTTHSNLIYCFAPLKNARLDYMVQKAVEMGASILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  NM R+    I A+EQC IL+LP      +L  LL+ WD    + F DE   S N L 
Sbjct: 121 TRINMARMEANVIEASEQCGILSLPECVSALSLAELLERWDETQPLFFCDEEHKSPNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                 ++    +LIGPEGG+  EE+  L   PFV P+SLGPRILR
Sbjct: 181 SFKK-RNVTTPGVLIGPEGGFSEEERSFLKKHPFVVPMSLGPRILR 225


>gi|119475424|ref|ZP_01615777.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium
           HTCC2143]
 gi|119451627|gb|EAW32860.1| hypothetical protein GP2143_16431 [marine gamma proteobacterium
           HTCC2143]
          Length = 241

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L      +      H+L+ VLR+K G +++LFNG   ++   I+ +GK  
Sbjct: 2   RISRIYTQATLQASQSVELEEKPSHHLSKVLRLKVGSDVILFNGDGYDYSGHINAIGKKS 61

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           +   ++ +    ++ S  +    +  K +R+D++IQKS E+G+  I P++T  T+     
Sbjct: 62  VGIYIDSREIKHSESSLKIHLGVAVSKGDRMDWIIQKSTELGVDEITPLLTERTELKLKG 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                     +   ISA EQ     LP I     L   ++  +   + V    +      
Sbjct: 122 DRKEKKQHHWQQIAISACEQSGRAQLPSINRIQHLSEWIQTIEATRKFVLHHRSTA---- 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L++   + +  +LIGPEGG   +E        F   L LGPRILR++TA +AA++++
Sbjct: 178 --LLNSNDDVSSACLLIGPEGGLSEDEIALAEHYHF-DALQLGPRILRTETAPLAAISIL 234

Query: 238 QAICGD 243
           Q   GD
Sbjct: 235 QHHWGD 240


>gi|83950615|ref|ZP_00959348.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM]
 gi|83838514|gb|EAP77810.1| hypothetical protein ISM_05935 [Roseovarius nubinhibens ISM]
          Length = 234

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 4/224 (1%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83
             DQ +YL +V+R+ +G ++ LFNG+DG W ++++  GK     +V  Q+  Q    D+ 
Sbjct: 2   DRDQANYLFNVMRLDQGASVTLFNGRDGAWRAEVAERGKRGGALQVAEQTAPQRNPPDLW 61

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            +F+PIK  R D++++K+ EMG   I PV T +T +     DR++ + I AAEQC    +
Sbjct: 62  LLFAPIKKARTDFIVEKAAEMGASRILPVQTEFTNSERIRQDRLQAHAIEAAEQCGGTFV 121

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK---LHAIAHIPNVAILIGPEGGY 200
           P +     L+ LL +W    Q++F DE      S        +       AILIGPEGG+
Sbjct: 122 PEVADLARLDRLLSDWPEERQLMFCDEALFDRPSPLTNGDATSSGTGTPWAILIGPEGGF 181

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              E+  LH+LPF  P+SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 182 SDAERSRLHALPFAHPVSLGPRILRADTAAVAAMTLWQDRLGDW 225


>gi|242237998|ref|YP_002986179.1| 16S ribosomal RNA methyltransferase RsmE [Dickeya dadantii Ech703]
 gi|242130055|gb|ACS84357.1| protein of unknown function DUF558 [Dickeya dadantii Ech703]
          Length = 244

 Score =  262 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   +   S D  +++  VLRM  G  + LF+G +  + ++I   GK 
Sbjct: 2   RIPRIFHPELLALHGGETDLSEDAANHVGRVLRMTAGQALQLFDGSNQVFDAEILQTGKK 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                    R +  +S +      +  +  ++++ IQKS+E+G+  I P+ +        
Sbjct: 62  SVCVRYAAGRVEDCESPLHLHLGQVMSRGEKMEFTIQKSIELGVSVITPLFSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  + + +   ISA EQC    +P I P  TLE      D+  ++        S N
Sbjct: 122 GDRLDKKIAQWQNIAISACEQCGRNRIPEIRPAMTLESWCAESDNGLKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        I  + +LIGPEGG  S E     +  F T + LGPR+LR++T A+ A+  
Sbjct: 182 TLSL-----PISRIRLLIGPEGGLSSGEIAMTAAQGF-TDILLGPRVLRTETTALTAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|300853987|ref|YP_003778971.1| hypothetical protein CLJU_c08010 [Clostridium ljungdahlii DSM
           13528]
 gi|300434102|gb|ADK13869.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 251

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV             G+   ++  VLR+K GD I + N    E+L  I  + K   
Sbjct: 1   MNKFFVPQEDINFNTAYIRGEDVKHIRKVLRLKCGDKININNCNGKEFLGAIEKIDKDEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
               +E  +     +  +       K+ ++D ++QK+VE+G+  I PV+T      +   
Sbjct: 61  VVNIIEELTLYNESKIKIYLFQGLPKSGKMDLIVQKAVELGVYEITPVVTSRVVVKNDSG 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               +DR       A +QC    +P +  P + + LL   ++   IV   E     G + 
Sbjct: 121 EFKKVDRWNKIAKEACKQCKRSIIPKVNVPISFKELLSEGEYMDVIVVPYENESNTGIKK 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +  +   +++  +AI+IGPEGG+  +E + L ++      +LGPRILR++TA    ++L
Sbjct: 181 IVNSIKDKSNLEKIAIVIGPEGGFEEQEIDELKNIN-SHIATLGPRILRTETAGFVCISL 239

Query: 237 VQAICGD 243
           +    GD
Sbjct: 240 IMYELGD 246


>gi|256821459|ref|YP_003145422.1| hypothetical protein Kkor_0233 [Kangiella koreensis DSM 16069]
 gi|256794998|gb|ACV25654.1| protein of unknown function DUF558 [Kangiella koreensis DSM 16069]
          Length = 242

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F    L + T+     +   +++ VLRM  G  I LFNG    + ++I  + ++ 
Sbjct: 2   RVPRIFTSEALSLSTEMALDKEASTHISRVLRMNTGQQIELFNGDGFSYFAQIQAIERNQ 61

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                VE    +     ++       + ++++  +QK VE+G+    P+IT         
Sbjct: 62  VSVRVVEAIEVNNESPLNIHLFQGISRGDKMELTLQKGVELGVKQFTPLITERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   +    SA EQC   ++P +YP   L+  L   ++    +  D    S++S
Sbjct: 122 KRWQKKLQHWQKVIESACEQCGRNSIPSLYPAVKLQDALSQLNNTSFFMHPD----SKHS 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + + A A    + + +GPEGG+  EE E + S     P+ LGPRILR++TAA+AA++++
Sbjct: 178 FKTIIADAQ-SELQLWVGPEGGFSDEEVEWVESHG-CKPVQLGPRILRTETAALAAVSVM 235

Query: 238 QAICGDW 244
            ++ GD+
Sbjct: 236 NSLWGDF 242


>gi|332305394|ref|YP_004433245.1| hypothetical protein Glaag_1016 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172723|gb|AEE21977.1| protein of unknown function DUF558 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 242

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            + R++    L      + + D  +++A+VLR K G  ++LFNG   E+  +   V K  
Sbjct: 2   RISRIYHPGALHSDQVLELTSDASNHVANVLRSKVGQPVVLFNGDGNEYSGEFIDVSKRK 61

Query: 65  IRFKVEYQ-SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R +++ + S S      +       + +R+D ++QKSVE+G+  I P+IT         
Sbjct: 62  VRVQIDAKLSISLESPLSIHLGQGISRGDRMDLVLQKSVELGVTEITPLITERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q       + +   I+A EQC    +P ++ PT  +  +       ++        S   
Sbjct: 122 QRWQKKHAQWQKIIIAACEQCGRNVIPTLHMPTEFQAWVNQSTPALRLTLHPRAEKSFR- 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               H       V +LIGPEGG+  +E        F T + LGPR+LR++TAA+ A++ +
Sbjct: 181 ----HTAVGSDGVRLLIGPEGGFSDQELYQTEQGGFHT-VQLGPRVLRTETAAITAISAL 235

Query: 238 QAICGD 243
           QAI GD
Sbjct: 236 QAIYGD 241


>gi|85059999|ref|YP_455701.1| hypothetical protein SG2021 [Sodalis glossinidius str. 'morsitans']
 gi|84780519|dbj|BAE75296.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 243

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL + T      D  H+++ VLRM     I LF+G +  + ++++ V K  
Sbjct: 2   RIPRIYHPAPLTVGTVLALGDDAAHHVSRVLRMTVDAPIALFDGSNHVFAARLTRVDKKG 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  ++ + ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VEATVLATQMEDRESLLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSARCGVKLEG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + +     I A EQC    L  I P  TLE      +   ++        S N+
Sbjct: 122 ERLEKKLQQWHKIAIGACEQCGRNRLAEIRPAMTLEAWCAEQEAGLKLNLHPRAQQSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           + +LIGPEGG  +EE     +  F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PAHGIRLLIGPEGGLSAEEIALTANYGF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|39934226|ref|NP_946502.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris CGA009]
 gi|39648074|emb|CAE26594.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 251

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/246 (42%), Positives = 145/246 (58%), Gaps = 3/246 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RLFVD  L    Q     DQ +YL +VLR+  G  +L FNG+DGEW + I+  
Sbjct: 3   RYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGR 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +    +V  Q+R Q +  DV Y+F+P+K  RLDYM QK+VEMG G ++PV+T++TQ   
Sbjct: 63  KRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSL-- 178
            N DR+R   I AAEQC IL+L  +  P  L+  L    +    +VF DE     + +  
Sbjct: 123 LNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLAGRANGERLLVFCDEDAEIADPVAA 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +    A    V +L+GPEGG+ +EE+  L   P +  L+LGPRI+R+DTAAVAA+ LVQ
Sbjct: 183 LQAARDAAARGVDLLVGPEGGFSTEERALLLKQPAILRLALGPRIMRADTAAVAALTLVQ 242

Query: 239 AICGDW 244
           A+ GDW
Sbjct: 243 AVLGDW 248


>gi|253690071|ref|YP_003019261.1| hypothetical protein PC1_3710 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756649|gb|ACT14725.1| protein of unknown function DUF558 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 244

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   + + S D  +++  VLRM  G  + LF+G +  + ++I   GK 
Sbjct: 2   RVPRIFHPDTLPLNGGEVELSDDAANHVGRVLRMNTGQALQLFDGSNHVFDAEIIAAGKK 61

Query: 65  -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R      +  ++     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVHFTAGKLENKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +++ +   I+A EQ     +P + P  TLE      D   ++        S N
Sbjct: 122 AERMEKKINQWQKIAIAACEQSGRNCVPLVRPAMTLEAWCAEQDSALKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ AM  
Sbjct: 182 TLPL-----PVDRVRLLIGPEGGLTASEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|254510112|ref|ZP_05122179.1| surface protein [Rhodobacteraceae bacterium KLH11]
 gi|221533823|gb|EEE36811.1| surface protein [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQ 76
                  + DQ HYL  V+R+  G  + LFNG+DGEWLS+++  GK         Q++  
Sbjct: 3   PGQSVPLTRDQAHYLFGVMRLSVGARVALFNGQDGEWLSEVAEAGKRGGVLGCIAQTKPL 62

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
               D+  +F+PIK  R D++++K+ EMG   I PV T +T +     DR++ + + AAE
Sbjct: 63  QLPPDLWLLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSDRIRQDRLQAHAVEAAE 122

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC    +P +     L+ +L  W    Q++F DE      S  +L         AILIGP
Sbjct: 123 QCGGTFVPEVAELQRLDRVLDAWPETRQLMFCDEAEVG--SALRLAKQEQNQPWAILIGP 180

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG+  +E++ L +LP+   +SLGPRILR+DTA VAAM + Q   GDW
Sbjct: 181 EGGFSDKERKRLAALPYSHTVSLGPRILRADTAVVAAMTMWQQALGDW 228


>gi|145631448|ref|ZP_01787218.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae
           R3021]
 gi|144982985|gb|EDJ90494.1| hypothetical protein CGSHi22421_06337 [Haemophilus influenzae
           R3021]
          Length = 245

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCLLSEDATNHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             KVE   R    +     +       +  R+++ IQKSVE+G+  I P+ +        
Sbjct: 61  SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC   ++P I P   L+      D   ++        S  
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIK 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L  + +      V +LIG EGG  ++E        F T + LG R+LR++TA++AA+  
Sbjct: 181 TLPTIPS----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQICFGD 242


>gi|222106772|ref|YP_002547563.1| hypothetical protein Avi_5780 [Agrobacterium vitis S4]
 gi|221737951|gb|ACM38847.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 245

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/226 (41%), Positives = 149/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+VD  L        + +QY+YLA+VLR+ EG  +L+FNG+DGEW + +++
Sbjct: 1   MRANYKMQRLYVDAGLEAANPVATTPEQYNYLANVLRLTEGAEVLVFNGRDGEWKASLAF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I    + Q+R Q + SD+ ++F+P+K  R+DY++QK+VEMG GA++PV+T++ Q 
Sbjct: 61  PTRKRIALIPQSQTRPQPRPSDLTFLFAPLKVGRMDYLVQKAVEMGAGALQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              +++R++   I AAEQC IL++P + P   L+ LL+ W    +I+F DE   ++N + 
Sbjct: 121 RIGSIERLQANVIEAAEQCGILSVPKVAPLVKLKDLLETWPATHRIIFCDEDSATDNPMP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L AI     +A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 ALAAIEERQ-LALLVGPEGGFSDEERSLLRSLGFVTAIPLGPRILR 225


>gi|254559584|ref|YP_003066679.1| hypothetical protein METDI1041 [Methylobacterium extorquens DM4]
 gi|254266862|emb|CAX22661.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 250

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/240 (45%), Positives = 149/240 (62%), Gaps = 4/240 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW +++   G KS  
Sbjct: 9   PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAELVPQGRKSAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR
Sbjct: 69  LRVVVQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-- 184
           ++   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L     
Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPGCLDALEANRLLVFCDEDASVTDPVAALRGAAD 188

Query: 185 -AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A+ P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ GD
Sbjct: 189 PANPPPLAVLVGPEGGFHAEERALIAARPNTVVLSLGPRILRADTAAVAVLALVQAVLGD 248


>gi|296133940|ref|YP_003641187.1| protein of unknown function DUF558 [Thermincola sp. JR]
 gi|296032518|gb|ADG83286.1| protein of unknown function DUF558 [Thermincola potens JR]
          Length = 249

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 9/245 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           + R FV        Q    G    +++ VLRM+ GD + L +    E+ ++I+ +  + I
Sbjct: 1   MARFFVKDEQVKGVQVFIVGSDVRHISKVLRMRPGDCLTLIDEAGTEYEARITQIAPERI 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++  ++    +   +V       K ++L+ +IQK VE+G+  I PV    +      +
Sbjct: 61  TCEIVTETSVNREPPLEVILCQGLPKGDKLELIIQKGVELGVTRIIPVSCTRSVVQLTEE 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R +   + AA+QC    +P + P T  +  L+        V   E        
Sbjct: 121 KAAKRRERWQRVALEAAKQCRRNKVPEVSPLTGFDEALQLIPDGVLAVIPWEDAVGTGLK 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L +  +   V I IGPEGG+   E E       V P++LG RILR++TA +AA+ +V 
Sbjct: 181 KVLRSYNNRGQVWIFIGPEGGFTEAEIEKAKGKG-VVPVTLGRRILRAETAGIAAITMVL 239

Query: 239 AICGD 243
              GD
Sbjct: 240 YQLGD 244


>gi|16127645|ref|NP_422209.1| hypothetical protein CC_3415 [Caulobacter crescentus CB15]
 gi|221236464|ref|YP_002518901.1| 16S ribosomal RNA methyltransferase RsmE [Caulobacter crescentus
           NA1000]
 gi|13425129|gb|AAK25377.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965637|gb|ACL96993.1| surface protein [Caulobacter crescentus NA1000]
          Length = 238

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 132/239 (55%), Gaps = 3/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + RLFV   L        + DQ  YL  V+R+  G  +LLFNG+DGEW + +    K   
Sbjct: 1   MIRLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGAELLLFNGRDGEWRATLVEATKRGC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             K E Q+R  T   D+  I + +K  R++ +++K+ E+G   +R  ITR T      + 
Sbjct: 61  LLKAEEQTRPMTLGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLG 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+    + AAEQ   L +P +  P  L+ +L  WD   ++VF DE   +   +E L    
Sbjct: 121 RLDAIAMEAAEQTGRLDVPEVADPEKLDKILDAWDPARRLVFCDEGGDARPMIEALSGTT 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AILIGPEGG+  EE+E L  L FVTP+SLGPRILR+DTAA++AM L QA  GDW
Sbjct: 181 GP--AAILIGPEGGFAPEERERLRGLAFVTPVSLGPRILRADTAAISAMTLWQAAAGDW 237


>gi|126734662|ref|ZP_01750408.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2]
 gi|126715217|gb|EBA12082.1| hypothetical protein RCCS2_12334 [Roseobacter sp. CCS2]
          Length = 244

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 6/246 (2%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +++ +   RL+VD  L        S +Q HYL  V+R+ EG  + L NG+DG W + +  
Sbjct: 2   VRLMASKVRLYVDHALGQGQSVPLSREQAHYLFGVMRLAEGAVLSLINGRDGAWDADVVK 61

Query: 61  VGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            GK     +   Q+       DV  +F+PI+  R  ++++K+VEMG+  + PV T +TQ+
Sbjct: 62  AGKKGGILECSAQTGPLQMPPDVWLLFAPIRKERTAFIVEKAVEMGVSRVCPVQTDFTQS 121

Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 D+++T+ I AAEQC    +P +     L+ LL  W  + Q++F DE    +   
Sbjct: 122 ANRVRQDKLQTHAIEAAEQCGGTFVPPVDDLAKLDRLLAAWPEDRQLMFCDEVLIGDRVG 181

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L         AILIGPEGG+   E++ L  LPF  P+SLGPRILR+DTAAVAA+ + Q
Sbjct: 182 LPLVE----GPWAILIGPEGGFSPAERDRLRGLPFAHPVSLGPRILRADTAAVAALTVWQ 237

Query: 239 AICGDW 244
              GDW
Sbjct: 238 QALGDW 243


>gi|239833512|ref|ZP_04681840.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
 gi|239821575|gb|EEQ93144.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
          Length = 248

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 108/256 (42%), Positives = 152/256 (59%), Gaps = 24/256 (9%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RL+V+  L   +Q + +    HYL HVLR+KEGD IL FNG+DGEW S++  
Sbjct: 1   MRANYKMQRLYVENDLQSGSQIEVASQAAHYLTHVLRLKEGDEILAFNGRDGEWKSRLRP 60

Query: 61  VGKSIRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
            GK  R  +E   Q+R Q   SD+ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ
Sbjct: 61  EGKK-RLFLEPFDQTRPQPPASDLIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQ 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 DR+R   I AAEQC +L+LP        +  ++ WD    ++F DE   S++ L
Sbjct: 120 VPKLGTDRIRVNAIEAAEQCGVLSLPACRETIRFDRFIEQWDETRHLIFCDEGHESDDPL 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDT 228
             L A+   P  A+LIGPEGG+  +E++TL  LP+VT + LGPRILR             
Sbjct: 180 TILQAMKPGP-AALLIGPEGGFSEDERQTLRRLPYVTAIPLGPRILRADTAAVAAMA--- 235

Query: 229 AAVAAMALVQAICGDW 244
                  LVQ++ GDW
Sbjct: 236 -------LVQSVLGDW 244


>gi|229107039|ref|NP_699939.2| 16S ribosomal RNA methyltransferase RsmE [Brucella suis 1330]
          Length = 248

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 104/255 (40%), Positives = 148/255 (58%), Gaps = 22/255 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++R +V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +  
Sbjct: 1   MRANYRMQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQP 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            G K +  +   Q+R Q K S++ Y F+P+K  +LDYM+QK+VEMG G ++PVIT++TQ 
Sbjct: 61  EGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L 
Sbjct: 121 PRLGTERIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLS 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTA 229
            L  +   P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR              
Sbjct: 181 ILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---- 235

Query: 230 AVAAMALVQAICGDW 244
                 LVQA+ GDW
Sbjct: 236 ------LVQAVLGDW 244


>gi|229259630|ref|NP_107316.2| 16S ribosomal RNA methyltransferase RsmE [Mesorhizobium loti
           MAFF303099]
          Length = 244

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 100/226 (44%), Positives = 141/226 (62%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   L    +  A   Q HYL HVLR+ EG  ILLFNG+DGEW + I+ 
Sbjct: 1   MRANYKMQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAA 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K  +R +V+   R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ 
Sbjct: 61  KSKKAVRLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++DR+R   + AAEQC IL +P +      E LL  WD   ++VF DE   + N L 
Sbjct: 121 AKPSIDRLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L A+     +A+L+GPEGG+  +E++ L +LPFVT + LGPRILR
Sbjct: 181 ALRAVKE-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILR 225


>gi|227115169|ref|ZP_03828825.1| hypothetical protein PcarbP_19518 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 244

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   + + S D  +++  VLRM  G ++ LF+G +  + ++I   GK 
Sbjct: 2   RVPRIFHPDTLPLNGGEVELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKK 61

Query: 65  -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R +    +   +     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVRFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQ     +P + P  TLE      D+  ++        S N
Sbjct: 122 AERMEKKISQWQKIAIAACEQSGRNCVPQVRPAMTLEAWCAEQDNALKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ AM  
Sbjct: 182 TLPL-----PVARVRLLIGPEGGLTASEITMTSEYGF-TDILLGPRVLRTETTALTAMTA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|284007789|emb|CBA73643.1| ribosomal RNA small subunit methyltransferase E [Arsenophonus
           nasoniae]
          Length = 245

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 14/249 (5%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +   + R++   PL      + S +  ++++ VLRM  G NI LF+G +  ++ +I    
Sbjct: 1   MTMRVPRIYHPNPLESGAIIQLSDNATNHVSRVLRMSVGQNIELFDGSNSIFIGQILEAN 60

Query: 63  KS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-- 118
           K  ++ ++      ++    D+       +  ++++ IQKSVE+G+  I P+++      
Sbjct: 61  KKSVKIQLGLATIANRESPLDLHLGQVISRGEKMEFTIQKSVELGVNIITPLLSERCNVK 120

Query: 119 ----NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
                      + ++  ISA EQC    +P I P   +E      D   +I    +   S
Sbjct: 121 LDPRRLSKKQQQWQSIAISACEQCGRNKIPLIRPVMPIEAWCMEKDDALKINLHPKAQSS 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L     +A +  + +LIGPEGG   +E     +  F T + LGPRILR++T A+ A+
Sbjct: 181 INTL-----LASVNKIRLLIGPEGGLSPDEIIMTTNYQF-TNILLGPRILRTETTALTAI 234

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 235 TALQVRFGD 243


>gi|192289752|ref|YP_001990357.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris TIE-1]
 gi|192283501|gb|ACE99881.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           TIE-1]
          Length = 251

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 104/246 (42%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RLFVD  L    Q     DQ +YL +VLR+  G  +L FNG+DGEW + I+  
Sbjct: 3   RYDFRSPRLFVDAALAPGAQVPLERDQSNYLGNVLRLGAGAAVLAFNGRDGEWRATIAGR 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +    +V  Q+R Q +  DV Y+F+P+K  RLDYM QK+VEMG G ++PV+T++TQ   
Sbjct: 63  KRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLQPVLTQHTQVHR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSL-- 178
            N DR+R   I AAEQC IL+L  +  P  L+  L +  +    +VF DE     + +  
Sbjct: 123 LNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLASRANGERLLVFCDEDAEIADPVAA 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +    A    V +L+GPEGG+ +EE+  L   P +  L+LGPRI+R+DTAAVAA+ LVQ
Sbjct: 183 LQAARDAAARGVDLLVGPEGGFSTEERALLLKQPVILRLALGPRIMRADTAAVAALTLVQ 242

Query: 239 AICGDW 244
           A+ GDW
Sbjct: 243 AVLGDW 248


>gi|295687718|ref|YP_003591411.1| hypothetical protein Cseg_0273 [Caulobacter segnis ATCC 21756]
 gi|295429621|gb|ADG08793.1| protein of unknown function DUF558 [Caulobacter segnis ATCC 21756]
          Length = 238

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 133/239 (55%), Gaps = 3/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + RLFV   L        + DQ  YL  V+R+  GD +LLFNG+DGEW + I    K   
Sbjct: 1   MIRLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGDEVLLFNGRDGEWRASIVEATKRGC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             K + Q+R      D+  I + +K  R++ +++K+ E+G   +R  ITR T      + 
Sbjct: 61  LLKADVQTRPMDTGPDLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDFVKLG 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+    + AAEQ   L +P I  P  L+ +L  WD   ++VF DE   +  ++E L    
Sbjct: 121 RLDAIAMEAAEQTGRLDVPEIVDPEKLDKILDGWDPTRRLVFCDEGGDARPAIEALAGTG 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AILIGPEGG+  EE+E L  L FVTP+SLGPRILR+DTAA++AM L QA  GDW
Sbjct: 181 AP--AAILIGPEGGFAPEERERLRGLSFVTPVSLGPRILRADTAAISAMTLWQASAGDW 237


>gi|260582598|ref|ZP_05850388.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae NT127]
 gi|260094409|gb|EEW78307.1| ribosomal RNA small subunit methyltransferase E [Haemophilus
           influenzae NT127]
          Length = 245

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  +TQ   S D  +++A VLRM EG+ + LF+  +  + +KI    K  
Sbjct: 2   RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDDSNHIYPAKIIESNKK- 60

Query: 66  RFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             KVE   R    +     +       +  R+++ IQKSVE+G+  I P+ +        
Sbjct: 61  SVKVEILGRELADKESNLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   I+A EQC   ++P I P   L+      D   ++        S  
Sbjct: 121 AERMDKKIQQWQKIAIAACEQCGRNSVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIK 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L  + +      V +LIG EGG  ++E        F T + LG R+LR++TA++AA+  
Sbjct: 181 TLPSIPS----EGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQICFGD 242


>gi|163850332|ref|YP_001638375.1| hypothetical protein Mext_0899 [Methylobacterium extorquens PA1]
 gi|163661937|gb|ABY29304.1| protein of unknown function DUF558 [Methylobacterium extorquens
           PA1]
          Length = 250

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 108/239 (45%), Positives = 148/239 (61%), Gaps = 4/239 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RLFV+  L           Q +YL  VLR  EG+ +LLFNG+DGEW ++I   G KS  
Sbjct: 9   PRLFVEADLAEGRVLPLERAQANYLLTVLRRAEGEPVLLFNGRDGEWRAEIVPQGRKSAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  Q+R Q   +D+ Y+F+P+KT R+DYM QK+VEMG G ++PV TR+TQ     +DR
Sbjct: 69  LRVVAQTRPQPAPADLHYLFAPLKTGRIDYMAQKAVEMGAGRLQPVFTRFTQGERIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           ++   I AAEQC IL++P I  P  L   L   + N  +VF DE     + +  L   A+
Sbjct: 129 LQANAIEAAEQCGILSVPEIGEPARLPACLDALEANRLLVFCDEDASVTDPVVALRGAAN 188

Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               P +A+L+GPEGG+H+EE+  + + P    LSLGPRILR+DTAAVA +ALVQA+ G
Sbjct: 189 PASPPPLAVLVGPEGGFHAEERALIAARPNTVALSLGPRILRADTAAVAVLALVQAVLG 247


>gi|317493538|ref|ZP_07951959.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918481|gb|EFV39819.1| RsmE family RNA methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 243

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L    +   S +  +++  VLRM EG  I LF+G +  +++ I    K  
Sbjct: 2   RIPRIYHPERLEAPCEIDLSEEAANHVGRVLRMSEGHEIQLFDGSNQVFVAHIVAASKKN 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R KV+      +     +       +  ++++ IQKS+E+G   I P+I+         
Sbjct: 62  VRVKVQSGVLEDRESPLHLHLGQVISRGEKMEFTIQKSIELGASIITPLISERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   LE      D + ++        S N+
Sbjct: 122 ERMAKKLGQWQKIAIAACEQCGRNVIPEIRPTMLLEQWCAEQDDSLKLNLHPRANASINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +
Sbjct: 182 LPL-----PVERVRLLIGPEGGLSADEIAMTAGYQF-TDILLGPRVLRTETTALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|331007217|ref|ZP_08330426.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC1989]
 gi|330418984|gb|EGG93441.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC1989]
          Length = 257

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 19/257 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-----NGKDGEWLSKISY 60
           H+ R+++  PL   TQ +      H+L  V+RMK G  ++LF     +G+ GE+ + ++ 
Sbjct: 2   HIPRIYIPLPLSEHTQIELDKASMHHLVTVMRMKVGRQVILFNNVPIDGRYGEFTATLAS 61

Query: 61  VGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           V K   R  + E+ S        V      IK +R+D+++QK+ E+G+  I P+ ++YT 
Sbjct: 62  VDKKQARVDIGEFVSPQIESPLQVHLGACLIKNDRMDWLLQKATELGVSEITPLFSQYTD 121

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADET 171
                +     M   R   I+A EQ   + LP ++ P  LE  + +  H   + V     
Sbjct: 122 VKLPAERIEKKMGHWRKIVINACEQSGRVRLPVLHTPLALEKWVASSTHVRQKFVLHPYA 181

Query: 172 CGSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
             S ++       + + +    +A+L+GPEGG   +E +      F   + LGPRILR++
Sbjct: 182 SSSPHTSADRPQESSLSSDINAIALLVGPEGGLTEDEVDLAVQSQF-KGMRLGPRILRAE 240

Query: 228 TAAVAAMALVQAICGDW 244
           TA + A+A++    GD+
Sbjct: 241 TAPLVALAVLSQQLGDF 257


>gi|297184217|gb|ADI20335.1| uncharacterized protein conserved in bacteria [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 243

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I S + RLFVD PL        + DQ +YL +V+R+  GD I +FNGKDGEW +++  
Sbjct: 1   MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K      V+ QS  Q    DV  +F+PIK  R D++++K+ EMG+  I PV T YT +
Sbjct: 60  ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKARTDFIVEKATEMGVSRICPVFTDYTNS 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R++ ++I AAEQC    +P +   +TL  +LK+W     ++F DE    EN   
Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGENVKS 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                      AILIGPEGG+   E   L SL FVT +SLGPRILR
Sbjct: 180 --MKATKSDKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILR 223


>gi|90426187|ref|YP_534557.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris BisB18]
 gi|90108201|gb|ABD90238.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           BisB18]
          Length = 251

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/245 (41%), Positives = 146/245 (59%), Gaps = 2/245 (0%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +I     RL+VD  L    Q   + +Q +YL +VLR+  G  +L+FNG+DGEW + I   
Sbjct: 3   QIEFRSPRLYVDADLSAGLQVPLTREQGNYLGNVLRLSAGAAVLVFNGRDGEWQAMIGAG 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +  R  +  ++R+Q    DV Y+F+P+K  RLDYM+QK++EMG  A++PV+TR+TQ T 
Sbjct: 63  KRVDRLDILSRARAQDGLPDVTYVFAPLKHARLDYMVQKAIEMGACALQPVLTRFTQVTR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            N +R+R   I AAEQC IL++  +  P  LE  L   D    +VF DE     + +  L
Sbjct: 123 VNTERMRANVIEAAEQCGILSIAAVEEPLKLERYLSTRDTGRLLVFCDEAAEVADPVAAL 182

Query: 182 HAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                  +  I  +IGPEGG+  EE+  L   P +  L+LGPRI+R+DTAAVAA+ LVQ 
Sbjct: 183 GGARERASAGIDVVIGPEGGFAEEERALLLRQPNILRLALGPRIMRADTAAVAALTLVQT 242

Query: 240 ICGDW 244
           + GDW
Sbjct: 243 VLGDW 247


>gi|255318401|ref|ZP_05359634.1| RNA methyltransferase [Acinetobacter radioresistens SK82]
 gi|262378631|ref|ZP_06071788.1| RNA methyltransferase [Acinetobacter radioresistens SH164]
 gi|255304393|gb|EET83577.1| RNA methyltransferase [Acinetobacter radioresistens SK82]
 gi|262299916|gb|EEY87828.1| RNA methyltransferase [Acinetobacter radioresistens SH164]
          Length = 239

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L + T  + +   +H+   VLR + GD+  LFNG+ GE+ + ++ + K   
Sbjct: 1   MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60

Query: 67  FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                 S    +T            K +R+DY+IQK+ E+G+  I+ + +   +      
Sbjct: 61  SVAIRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +D  +   I+A EQC +  +P I PP  L   L+      ++V A      +N L
Sbjct: 121 RDQKKLDHWQAVVIAACEQCGMNRIPEILPPVPLTDWLQQNLPATRLVLAP-NKRQQNVL 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     ++A+LIGPEGG    E +  +   F     +G RILR++TA V A++++ 
Sbjct: 180 TDAQT-----DLALLIGPEGGLSEAEIDMANHAGF-KNWCIGERILRTETAPVVALSILN 233

Query: 239 AIC 241
              
Sbjct: 234 HHF 236


>gi|114771337|ref|ZP_01448757.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255]
 gi|114548262|gb|EAU51149.1| hypothetical protein OM2255_08270 [alpha proteobacterium HTCC2255]
          Length = 243

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I S + RLFVD PL        + DQ +YL +V+R+  GD I +FNGKDGEW +++  
Sbjct: 1   MDIRSKI-RLFVDSPLGEGQSILLARDQANYLFNVMRLNIGDFISVFNGKDGEWQAEVLQ 59

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             K      V+ QS  Q    DV  +F+PIK  R D++++K+ EMG+  I PV T YT +
Sbjct: 60  ANKRKGIIIVKNQSMPQLLPPDVWLLFAPIKKTRTDFIVEKATEMGVSRICPVFTDYTNS 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R++ ++I AAEQC    +P +   +TL  +LK+W     ++F DE    EN   
Sbjct: 120 DRIKQSRLQAHSIEAAEQCGGTYVPPVDELSTLTSVLKSWPKERHLLFCDEHKVGENVKS 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                      AILIGPEGG+   E   L SL FVT +SLGPRILR
Sbjct: 180 --MKATKSDKWAILIGPEGGFSDSEVMHLKSLEFVTSISLGPRILR 223


>gi|50122843|ref|YP_052010.1| 16S ribosomal RNA methyltransferase RsmE [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613369|emb|CAG76820.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   + + S D  +++  VLRM  G ++ LF+G +  + ++I   GK 
Sbjct: 2   RVPRIFHPETLPLNGGEAELSDDAANHIGRVLRMNTGQSLQLFDGSNHVFDAEIIAAGKK 61

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                    +   +     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVSFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  + + +   ++A EQ     +P + P  TLE      D+  ++        S N
Sbjct: 122 ADRMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDNALKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        I  V +LIGPEGG  + E        F T + LGPR+LR++T A+ AM  
Sbjct: 182 TLPL-----PIDRVRLLIGPEGGLTATEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|152981289|ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp.
           Marseille]
 gi|151281366|gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 241

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +   PL I           H++  V+R+  GD+I LFNG+ GE+ + I+ + K   
Sbjct: 1   MPRFYCPQPLAIGAVITLPDHVAHHI-QVVRLGSGDHITLFNGEGGEYTATITTIEKKRV 59

Query: 67  FKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                    R       V    +  + +++D++I+K+VE+G+ AI+P+ ++        +
Sbjct: 60  TAEIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQRCVVRLSAE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                M   +   ++A+EQ     L  +  P      ++  D + +I+ +      E SL
Sbjct: 120 RAAKKMQHWQGVIVAASEQSGRNRLAALAEPVDFNQWVQQKDLHKRILLSPRA---EQSL 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     +VA++IGPEGG+  +E++   +      LS+GPR+LR++TA ++A+A + 
Sbjct: 177 SDWARHHPPQSVALMIGPEGGFTDKEEDLALAQG-ALMLSMGPRVLRTETAGLSALAALN 235

Query: 239 AICG 242
           A+ G
Sbjct: 236 AVWG 239


>gi|332991913|gb|AEF01968.1| hypothetical protein ambt_02070 [Alteromonas sp. SN2]
          Length = 242

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+ ++ + + + +  H++A VLR+K    I+LFNG   E+ ++I    +  
Sbjct: 2   RIPRIYYPNPIPLEEEFQLTEEAGHHIASVLRLKANHPIVLFNGDGNEYSAQIINAQRKK 61

Query: 66  RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            F       + S+    ++       K +R+D ++QKSVE+G+  I P+++         
Sbjct: 62  VFVEADACLTLSKESSLNIHLGQGVSKGDRMDTVLQKSVELGVTEITPILSERCTVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   I A EQ    TLP + PP  L   L     + ++V A    G+E  
Sbjct: 122 ARWEKKLLQWQKIIIGACEQSGRNTLPSLNPPIALNKWLSESTSSSRLVLAP---GAEKP 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L       +     +LIGPEGG    E    +   F T  SLGPRILR++TAA+++++++
Sbjct: 179 LA--RQPYNSQGFRLLIGPEGGLSEGEIHQANESGF-TSCSLGPRILRTETAAISSISIL 235

Query: 238 QAICGDW 244
           QA  GD+
Sbjct: 236 QAQHGDF 242


>gi|15613913|ref|NP_242216.1| hypothetical protein BH1350 [Bacillus halodurans C-125]
 gi|10173966|dbj|BAB05069.1| BH1350 [Bacillus halodurans C-125]
          Length = 250

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV       T    +GD   ++  V+RM  GD ++  +G       +I     S  
Sbjct: 1   MQRYFVPKEQMTDTYVTITGDDVKHIIKVMRMTIGDELICSDGHGRTVRCEIEKANDSEV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
               +E    +      V    +  K ++LDY++QK  E+G  A  P      ++    +
Sbjct: 61  LARVIEPLIPNTELPIRVTIAQALPKGDKLDYIVQKGTELGAQAFWPFSASRSIVKWDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R+      AAEQ     +P I  P     LL+      + + A E    E  L
Sbjct: 121 KGRKKTERLMKIAKEAAEQSYRERIPSIETPLAFSKLLQEISGFTKTIVAYEEEAKEGRL 180

Query: 179 ----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L+ + H  ++ ++IGPEGG+ +EE + +       P  LGPRILR++TA++ A+
Sbjct: 181 MTFAACLNELHHGDSLLVIIGPEGGFTTEEIDAIQRAGGA-PAGLGPRILRTETASLYAL 239

Query: 235 ALVQAIC 241
           A +    
Sbjct: 240 AAISYHF 246


>gi|312883853|ref|ZP_07743570.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368311|gb|EFP95846.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 243

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R++    +        S +   ++  VLRMK G  + LF+G   E+++ IS   K  
Sbjct: 2   RTPRIYHPEMITQLGLLTLSEEAAGHVGRVLRMKIGQELRLFDGSGSEFIATISSQSKKN 61

Query: 66  RFKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 Q   RS      +       + +++++ IQKSVE+G+  I P+I+         
Sbjct: 62  VEVEVKQSIERSAESNLKLHLGQVISRGDKMEFTIQKSVELGVEVITPLISERCGVKLDQ 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC    +P I P  +LE          ++        S N+
Sbjct: 122 KRFEKKLAQWQKIAISACEQCGRNRIPSIRPIMSLENWCGEEYDGLKLNLHPRADYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        +  V +LIGPEGG    E +      F + + LGPR+LR++TAA+ A+  +
Sbjct: 182 LPT-----PVEQVKLLIGPEGGLSEAEIDMTQKYAF-SDILLGPRVLRTETAALTAITAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QVRFGD 241


>gi|166031241|ref|ZP_02234070.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC
           27755]
 gi|166029088|gb|EDR47845.1| hypothetical protein DORFOR_00928 [Dorea formicigenerans ATCC
           27755]
          Length = 248

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           ++  FVD     +   +  G   +++ +VLRM+ G+ + + +G+  E+L ++  +  + +
Sbjct: 1   MQHFFVDASQVSEETIRIEGTDVNHMKNVLRMRIGEEVTVSDGQGKEYLCQVRDFEEEQV 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + K+     S     S +       K  +++ ++QK VE+G+ A+ PV  +        +
Sbjct: 61  QLKIVETKASDAELPSKIYLFQGLPKQEKMELIVQKCVELGIYAVVPVSMKRCVVKLDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                ++R  T   SAA+Q     +P +    T +  L+   D +  +V  +   G E++
Sbjct: 121 KGAKKVERWNTIAASAAKQSGRGIVPEVTSVKTYKEALEMAKDLDVVLVPYECAEGMEHT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E + +I    +V I IGPEGG+  +E      +     ++LG RILR++TA +A ++++
Sbjct: 181 KELIQSIKPGQSVGIFIGPEGGFDPDEIALACEMGG-QVITLGKRILRTETAGLALLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFQL 243


>gi|307543622|ref|YP_003896101.1| hypothetical protein HELO_1033 [Halomonas elongata DSM 2581]
 gi|307215646|emb|CBV40916.1| K09761 hypothetical protein [Halomonas elongata DSM 2581]
          Length = 248

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 18/254 (7%)

Query: 1   MKIHSHL---KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57
           M     +    R+ V   L              ++A VLR+  G  +++F+G+  E  + 
Sbjct: 1   MSAKHSMGKAPRIHVAAELQAGGDVVLPDGAARHVARVLRLGPGAPVIIFDGQGNEAEAI 60

Query: 58  ISYVGKSIRFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
           ++  G+        +  +        V    +  K +R+DY IQK+VE+G+  I P+ T 
Sbjct: 61  LTEAGRKQVVARVERVAAGRGESPLAVHLGQAISKGDRMDYAIQKAVELGVAEITPLYTE 120

Query: 116 Y------TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169
           +       +     +   +    SA EQC   TLP +YPP ++   L   D    +V   
Sbjct: 121 HGDVRLKGEREAKKLAHWQAVAASACEQCGRATLPPVYPPRSVVDWLAERDEPLCLVLHP 180

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            T G       L         A+LIGPEGG    E +      F + L+LGPRILR++TA
Sbjct: 181 GTPGG------LDRHDDPVRAALLIGPEGGLSHAEVDAAADAGFAS-LTLGPRILRTETA 233

Query: 230 AVAAMALVQAICGD 243
            V A++L+Q   GD
Sbjct: 234 PVVALSLLQNRFGD 247


>gi|227326188|ref|ZP_03830212.1| hypothetical protein PcarcW_02253 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 244

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+F    L +   + + S D  +++  VLRM  G ++ LF+G +  + ++I   GK 
Sbjct: 2   RVPRIFHPETLSLNGGEAELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGKK 61

Query: 65  -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +R +    +   +     +       +  ++++ IQKS+E+G+  I P+++        
Sbjct: 62  SVRVRFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKLD 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + + +   ++A EQ     +P + P  TLE      D   ++        S N
Sbjct: 122 AERMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDDALKLNLHPRATQSIN 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L        +  V +LIGPEGG  + E        F T + LGPR+LR++T A+ AM  
Sbjct: 182 TLPL-----PVARVRLLIGPEGGLTAGEITMTSEHGF-TDILLGPRVLRTETTALTAMTA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQVRFGD 242


>gi|212638681|ref|YP_002315201.1| hypothetical protein Aflv_0838 [Anoxybacillus flavithermus WK1]
 gi|212560161|gb|ACJ33216.1| Uncharacterized protein conserved in bacteria [Anoxybacillus
           flavithermus WK1]
          Length = 252

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L+R FV     +      SGD  H++  V+RM EGD +L  N +    L +I  +    +
Sbjct: 4   LQRYFVRNEQIVGDHVMISGDDVHHIGRVMRMNEGDRLLCCNERSETMLCEIEQISNDFV 63

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++  +   +      V      +K ++ + ++QK  E+G     P+IT  +      +
Sbjct: 64  RCRIIQWIEANVELPVHVYVASGLLKGDKYELVLQKGTELGAKGFLPLITSRSIVKWDEK 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                ++R +     AAEQ     +P +Y P T+  L+           A E    E   
Sbjct: 124 KGDKKVERWQKIVKEAAEQSHRAYMPSVYAPMTIRELIAWAHDIHYKCIAYEEEAKEGHH 183

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L  +    ++ I+ GPEGG   +E   L    FV   SLGPRILR++TA + A+
Sbjct: 184 RSFAHLLQTMNKEDSLLIVFGPEGGLSEQEVALLKEHGFV-ACSLGPRILRAETAPLYAL 242

Query: 235 ALVQAIC 241
           + V    
Sbjct: 243 SAVSYEW 249


>gi|293607138|ref|ZP_06689480.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC
           43553]
 gi|292814472|gb|EFF73611.1| 16S rRNA methyltransferase RsmE [Achromobacter piechaudii ATCC
           43553]
          Length = 243

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 10/241 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D PL    +        H+   VLR+K G++++LFNG+ GE+ + +   GK+   
Sbjct: 4   PRFFCDIPLSAGARIALPDALAHHALRVLRLKAGESVVLFNGQGGEYPAVLDVDGKAGYA 63

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
           ++ ++ +R       +  +      +++D++++K+VE+G   + P+  + +         
Sbjct: 64  QLGDFSAREAELAGRITLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGPRL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +   +    SAAEQC    L  +  P +L   L       +++   E    E+   K
Sbjct: 124 DKRVAHWQRIAQSAAEQCGRNRLMAVDAPRSLADWLAEPAEGLRLLCHPEA--GEDLAGK 181

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A   +  + +L+GPEGG+  +E E       V  +  GPR+LR++TA +A ++ V A+
Sbjct: 182 LRAAPGLTALTLLVGPEGGWSDKELELARQAG-VQAVRFGPRVLRTETAGLALVSAVSAL 240

Query: 241 C 241
            
Sbjct: 241 L 241


>gi|307308472|ref|ZP_07588176.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C]
 gi|307319035|ref|ZP_07598466.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83]
 gi|306895449|gb|EFN26204.1| protein of unknown function DUF558 [Sinorhizobium meliloti AK83]
 gi|306901075|gb|EFN31683.1| protein of unknown function DUF558 [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 148/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLF++ PL    + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ 
Sbjct: 1   MRANFRMQRLFIENPLHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60

Query: 61  VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             +     V   Q+R Q    D+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              +++RVR   I AAEQC +L +P +  P  LE LL +W  + +IVF DE   S+N L 
Sbjct: 121 KIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L  IA    +A+LIGPEGG+   E++ L S  FVT + LGPRILR
Sbjct: 181 ILEGIAE-RRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225


>gi|170751754|ref|YP_001758014.1| hypothetical protein Mrad2831_5384 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658276|gb|ACB27331.1| protein of unknown function DUF558 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 250

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/240 (42%), Positives = 139/240 (57%), Gaps = 4/240 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RL V   L           Q +YL +VLR    D +L+FNG+ GEW + +   G+    
Sbjct: 9   PRLHVAADLAAGVILPLDRAQANYLLNVLRRGPDDPVLVFNGRHGEWRAHLVQTGRKGAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V  Q+R QT+++D+ Y+F+P+K+ RLDY+ QK+VEMG G IRPVITR+TQ    N+DR
Sbjct: 69  LHVAAQTRPQTERADLHYLFAPLKSARLDYLAQKAVEMGAGTIRPVITRFTQGDRVNIDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   + AAEQC IL +P    P  L   L        +VF DE     + +  L A   
Sbjct: 129 LRANAVEAAEQCGILAIPECPEPERLPAALAGLAPGRLLVFCDEDAPVRDPVAALRAAGD 188

Query: 187 ---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
               P +A+L+GPEGG+  EE+  + + P    LSLGPRILR+DTAAVA + LVQA+ GD
Sbjct: 189 PLAPPPLAVLVGPEGGFSEEERALILARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248


>gi|95928478|ref|ZP_01311225.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
 gi|95135268|gb|EAT16920.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
          Length = 261

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 11/247 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
            S ++R F        +      D  H+++ VLR++  D I+L +G+ G    +I  +  
Sbjct: 7   RSLMRRFFTPQITFTHSSADLPRDVAHHISTVLRLRTDDRIVLCDGRGGCAECRIDEISP 66

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           K  R         Q     V  I     +++LD ++QK+ E+G+  +RPV  +  Q    
Sbjct: 67  KRCRVTRLRHWLEQETALPVTLIQGLPHSDKLDLILQKTTELGVQQVRPVRCQRCQYPIA 126

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AA Q +   LP +    + E  L++ D + ++V  ++    + 
Sbjct: 127 PAKAARKLERWQKIVTEAARQSERSWLPEVAALCSFEEALQHCDADVKLVLWEQA---DQ 183

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+++        VA+++GPEGG   EE        FV  + LGPRILR++TA +A MA+
Sbjct: 184 PLQRVLPEISPDRVAVVVGPEGGLAQEEVALAVEHGFV-AVGLGPRILRTETAGMALMAI 242

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 243 LQYQYGD 249


>gi|152976741|ref|YP_001376258.1| hypothetical protein Bcer98_3037 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025493|gb|ABS23263.1| protein of unknown function DUF558 [Bacillus cytotoxicus NVH
           391-98]
          Length = 249

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+      T  +  GD  H++A V+RM  GD+I             I+ +     
Sbjct: 1   MQRYFVEEKNVNGTTIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAACTIAEITNEFV 59

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   +      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  DSTIVEWIETTSELPILVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
            T   ++R++     AAEQ     +P +Y P + + LL+        + A E    +   
Sbjct: 120 KTDKKVERLKKIVKEAAEQSHRTEIPHVYAPVSFKQLLEMSKEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 ANFAKALTTIEPGQKLLIVFGPEGGLSEEEVSALREYKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|254473523|ref|ZP_05086919.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062]
 gi|211957235|gb|EEA92439.1| conserved hypothetical protein TIGR00046 [Pseudovibrio sp. JE062]
          Length = 242

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/223 (46%), Positives = 143/223 (64%), Gaps = 5/223 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RLFVD  L      +A   Q +YL +VLRMKEG  +L+FNGK GEW ++I   G KS 
Sbjct: 1   MQRLFVDQELRAGLHLEADRAQANYLLNVLRMKEGGEVLVFNGKHGEWRAQILPTGRKSC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
              V  Q R QT   D+ Y+F+P+K  RLDYM+QK+VEMG G +RPVIT++TQN    ++
Sbjct: 61  ELIVTEQLREQTPTPDLDYLFAPLKLARLDYMVQKAVEMGAGRLRPVITQFTQNPKIKLE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLH 182
           R+ +  + A EQC +L++P +  P  ++ LL  W+    + QI+F DE  G+ N LE L 
Sbjct: 121 RMESNALEACEQCGVLSVPSVLEPVQIKKLLSTWEQEEGDRQIIFCDEGHGTHNPLEALK 180

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +   P +A+LIGPEGG+  EE+  LHS PFV  + LGPRILR
Sbjct: 181 DVPKAP-LAVLIGPEGGFSEEERALLHSKPFVHAIPLGPRILR 222


>gi|254508609|ref|ZP_05120725.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
 gi|219548460|gb|EED25469.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
          Length = 225

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 14/228 (6%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSD 81
            S D   ++  VLRMKEG ++LLF+G   E+ + IS V K        E   RS     D
Sbjct: 2   LSDDAAGHIGRVLRMKEGQDVLLFDGSGAEFPATISSVTKKHVEVDVTERIERSAESPLD 61

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
           +       + +++++ IQKSVE+G+  I P+I+         +     + + +   ISA 
Sbjct: 62  LHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLDQKRFEKKLAQWQKIAISAC 121

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC   T+P I P   LE          ++        S N+L        +  V +LIG
Sbjct: 122 EQCGRNTVPEIRPIMQLEEWCAEDYDGLKLNLHPRAKYSINTLPT-----PVEKVRLLIG 176

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           PEGG  +EE        F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 177 PEGGLSAEEIGMTEEYKFEETL-LGPRVLRTETAALTAITALQVRFGD 223


>gi|159139721|gb|AAK86465.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 239

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/220 (43%), Positives = 148/220 (67%), Gaps = 2/220 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RLF++  L      +A+G+Q++YLA+VLRM +G  ILLFNG+DGEW +K+S+   K I
Sbjct: 1   MQRLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
                 Q+R Q   +++ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q   +N +
Sbjct: 61  SLVPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNSE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           ++R   I AAEQC IL+LP +  P  L+ +L+ W  + +I++ DE    +N L  L A+ 
Sbjct: 121 KLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVK 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
               +A+L+GPEGG+  EE+  L SL FVTP+ LGPRILR
Sbjct: 181 E-RKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILR 219


>gi|306845979|ref|ZP_07478546.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|306273614|gb|EFM55459.1| conserved hypothetical protein [Brucella sp. BO1]
          Length = 242

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 107/249 (42%), Positives = 147/249 (59%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELQAGVSFDAEAQAAHYLAHVLRMKEGDKVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      D
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|160880435|ref|YP_001559403.1| hypothetical protein Cphy_2303 [Clostridium phytofermentans ISDg]
 gi|160429101|gb|ABX42664.1| protein of unknown function DUF558 [Clostridium phytofermentans
           ISDg]
          Length = 246

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++R +++      T  +  G   +++ +VLRMK G+ ++  +G+  ++   I+   K +I
Sbjct: 1   MQRFYIESTNISDTTIRIEGADVNHIKNVLRMKIGEKLIACDGQGIDYCCIIAEFEKDNI 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
              +  + ++ T+  + +       K ++++ ++QK+VE+G   I PV+ + T       
Sbjct: 61  ILSISERKKTDTELPAKLILFQGLPKKDKMELIVQKAVELGAYEIVPVMMKRTIVKLEDK 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
           +     ++R +     AA+Q     +P ++   + +  +K     +  I+  +   G   
Sbjct: 121 KKEQKKLERWQAIAEGAAKQSGRGFIPRVHEIVSYQEAIKMASECDLSILPYECASGINE 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +   ++      ++ I+IGPEGG+  +E +       + P++LG RILR++TA +  ++ 
Sbjct: 181 TRALINQSKGKDSIGIMIGPEGGFAEDEVDLAKEHG-IIPVTLGKRILRTETAGLTILSY 239

Query: 237 VQAIC 241
           +    
Sbjct: 240 LMLTL 244


>gi|118444754|ref|YP_878563.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium novyi NT]
 gi|118135210|gb|ABK62254.1| conserved hypothetical protein TIGR00046 [Clostridium novyi NT]
          Length = 251

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV     +       G+   ++  VLR+KEGD + + +    E+L  I Y+ KS  
Sbjct: 1   MHKFFVSENNILSDIAVIEGEDVKHIYKVLRLKEGDKVNINDCNGKEFLGTIDYIDKSKV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
               +E    +     +V       K +++D ++QK  E+G+  I PV+T          
Sbjct: 61  EVKLLEELEINNEPPIEVYLYQGLPKASKMDLIVQKCTELGIREITPVVTGRVASSINDI 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR       A +Q     +P +     ++ L +       IV   E   +   
Sbjct: 121 KRESKKLDRWNRIAFEACKQNKRTLIPKVNDIMNMDELKEQLKEMDLIVVPYENAENYGI 180

Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + +  +   +  V I+IGPEGG+  EE E L ++     ++LGPRILR++TA    +AL
Sbjct: 181 KQMIKNVTGEVKKVGIIIGPEGGFEQEEIEELKNME-AQIVTLGPRILRTETAGFTCLAL 239

Query: 237 VQAICGD 243
           +    GD
Sbjct: 240 LMYELGD 246


>gi|168215653|ref|ZP_02641278.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC
           8239]
 gi|182382065|gb|EDT79544.1| RNA methyltransferase, RsmE family [Clostridium perfringens NCTC
           8239]
          Length = 250

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F    +   T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K  +
Sbjct: 1   MHKFFTPAHMFSDTHVKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+ E    +     ++       K  ++D ++QK VE+G+  I P IT       +  
Sbjct: 61  SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+    + A +Q     +P +  P   + +L+  D    +V   E          
Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKEVLEKIDELDLMVIPYENATGYGIRAM 180

Query: 181 LHAIAH---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +++I +   I NV I++GPEGG+   E E L        ++LGPRILR++TA    ++L+
Sbjct: 181 VNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239

Query: 238 QAICGD 243
           Q   GD
Sbjct: 240 QYELGD 245


>gi|90580291|ref|ZP_01236098.1| hypothetical protein VAS14_20206 [Vibrio angustum S14]
 gi|90438593|gb|EAS63777.1| hypothetical protein VAS14_20206 [Vibrio angustum S14]
          Length = 225

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80
            S D  +++  V+RM+ G  +L+F+G + E+ + I+   K    +VE QSR +       
Sbjct: 2   LSDDAANHVGRVMRMQVGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVEHSIESPL 60

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           D+       + +++++ IQKSVE+G+  I P+I+         +     +D+ +   I+A
Sbjct: 61  DIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLDQWQKIAIAA 120

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   LE          ++        S N+L        + NV +LI
Sbjct: 121 CEQCGRNVVPTIRPVMKLEQWCAEEYDGLKLNLHPRANYSINTLPT-----PVTNVRLLI 175

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  ++E        F   + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 GPEGGLSADEISMTEQYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223


>gi|78044093|ref|YP_359279.1| hypothetical protein CHY_0418 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996208|gb|ABB15107.1| conserved hypothetical protein TIGR00046 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 248

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           +   F+            +GD   ++A VLR+K G+ + L + ++  +L ++  V K  +
Sbjct: 1   MPYFFLPPGQTQGDYAYLTGDDAKHVAKVLRIKPGEKLTLQDDQEFRYLCQVIAVRKDLV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QN 119
           + K+  + +  T+   +V  +    K +++D+++QK+ E+G+  I PV T  T     + 
Sbjct: 61  QLKILEKKKVVTRPPVNVTLVQGVPKGDKMDFIVQKATELGVYRIIPVETIRTVVVFDER 120

Query: 120 THY-NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R +     AA+Q  +  +P I+P   L+ L +       +V  +     + SL
Sbjct: 121 KKKDRCERWQKIAYEAAKQAGVSRVPEIFPVIDLKALPEFISDALILVPYE--GEEQTSL 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           ++L     + NV ++IGPEGG+   E E L S   VT +SLGPRILR++TAA+A +++V 
Sbjct: 179 KQLLNKEAVKNVTVIIGPEGGFDPGEIEYLKSFGAVT-VSLGPRILRTETAALAVLSMVL 237

Query: 239 AICGD 243
              GD
Sbjct: 238 YQWGD 242


>gi|229595716|ref|YP_001525220.2| 16S ribosomal RNA methyltransferase RsmE [Azorhizobium caulinodans
           ORS 571]
          Length = 250

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 2/241 (0%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
              +RLFV   L   T      +Q HY+A+V+R+     +L+FNG+DGEW + +I    K
Sbjct: 6   FRAQRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKK 65

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            +R  +  Q+R Q   + + Y F+P+K  RLDYM+QK+VEMG G + PV+T++TQ    N
Sbjct: 66  EVRLSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVN 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R+    I AAEQC ILT+P +  P  L   L     +  +VF DE     + L  L  
Sbjct: 126 GERMEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRP 185

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A  P + +LIGPEGG+ ++E+  LH    V  ++LGPRILR+DTA VAA+ALVQA+CGD
Sbjct: 186 AAGGP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGD 244

Query: 244 W 244
           W
Sbjct: 245 W 245


>gi|302389476|ref|YP_003825297.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM
           16646]
 gi|302200104|gb|ADL07674.1| protein of unknown function DUF558 [Thermosediminibacter oceani DSM
           16646]
          Length = 256

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63
           +   F+   +      + SG+  H++A VLRM +GD + L NG D     +I  +    +
Sbjct: 1   MPIFFIHGKMNPGEVVEISGEDAHHIARVLRMGKGDLLSLSNGLDALGTGQILELFPEDR 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I+ KV  +++ + ++  +    S  K  + D ++QK+ E+G+    PVIT  T      
Sbjct: 61  KIKVKVIEKNKFEPRRPRITLFQSVPKGQKFDLILQKNTELGVSEFVPVITERTVVEIEG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           ++     +R R  T  AA+QC    LP +  P + +  L+   +   ++   E       
Sbjct: 121 ESKSKKAERWRKITKEAAKQCRRPDLPVVREPVSFDGCLELLKNYRIVLVPWEGEREVFL 180

Query: 178 LEKLHAIAH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              L  +   +P++A+LIGPEGG+  +E E       VT +SLGPRILR++TA     A+
Sbjct: 181 KSILSNVPPDVPDIAVLIGPEGGFSVQEIERARKSGAVT-VSLGPRILRTETAGFVVTAV 239

Query: 237 VQAICGD 243
           +    GD
Sbjct: 240 LMYELGD 246


>gi|220936059|ref|YP_002514958.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997369|gb|ACL73971.1| protein of unknown function DUF558 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 244

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              RL+++  L +    +     + ++  VLR++ G  ++LFNG+ GE+ + ++   K  
Sbjct: 2   RTTRLYLNQSLSVGDTIELDERAHRHVVQVLRLRPGAELVLFNGQGGEYRATLTEAQKRH 61

Query: 66  --RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
                  +  R       V  +    K +R+DY +QK+ E+G+  I+PV+T+ +Q     
Sbjct: 62  SSVSLTGFDPRDTRPALPVTLVQGISKGDRMDYSLQKATELGVSRIQPVLTQRSQAPGDP 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSEN 176
                 ++  R   ISA EQC    LP +    + +  L    D    +V         +
Sbjct: 122 RRLDNRLEHWRGVVISACEQCGRNELPELGGVISFQAWLGSEPDSGLGLVLDPRAETGLS 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L     +     V++LIGPEGG    E        F TP+ LGPRILR++TA VAA+A+
Sbjct: 182 GL-----VPPEGEVSLLIGPEGGLDEAEILAARHRGF-TPVRLGPRILRTETAGVAALAV 235

Query: 237 VQAICGD 243
           +Q + GD
Sbjct: 236 IQGLWGD 242


>gi|260756485|ref|ZP_05868833.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260759917|ref|ZP_05872265.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763155|ref|ZP_05875487.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882306|ref|ZP_05893920.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261216206|ref|ZP_05930487.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|62197593|gb|AAX75892.1| conserved hypothetical protein TIGR00046 [Brucella abortus bv. 1
           str. 9-941]
 gi|82939654|emb|CAJ12643.1| Conserved hypothetical protein 46:Protein of unknown function
           DUF558 [Brucella melitensis biovar Abortus 2308]
 gi|189021229|gb|ACD73950.1| Conserved hypothetical protein 46 [Brucella abortus S19]
 gi|260670235|gb|EEX57175.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673576|gb|EEX60397.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676593|gb|EEX63414.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260871834|gb|EEX78903.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260917813|gb|EEX84674.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 242

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 145/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVLRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH  PFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRQPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|307824730|ref|ZP_07654953.1| protein of unknown function DUF558 [Methylobacter tundripaludum
           SV96]
 gi|307734088|gb|EFO04942.1| protein of unknown function DUF558 [Methylobacter tundripaludum
           SV96]
          Length = 253

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + RL+   PL      +   D  HY+  VLR+K+  +I+LFNG  GE+L  ++ V +  
Sbjct: 2   RVSRLYTSAPLATGKLIELDDDNGHYVRTVLRLKKDAHIILFNGHGGEYLCTVAEVSRKA 61

Query: 66  RFKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 Q   RS      +       + +R+D  +QK+VE+G+  I P++T         
Sbjct: 62  VLIDVGQWSDRSVESPLQITLGLGISRGDRMDLTVQKAVELGVNHITPLLTERCVVQFKG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   +     AAEQ    +LP +     L+  L N     ++        + + 
Sbjct: 122 EKKPQRLLHWQKIVQHAAEQSGRTSLPPLLEVEQLQNWLGNQ-QGLKVFLDPYAETTLSE 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+          V +L GPEGG+ ++E++   +  F+ P+ LG RILR++TA++AA+A V
Sbjct: 181 LK-----PETMKVTLLTGPEGGFSNQERDAAKASGFI-PVRLGSRILRTETASLAALAAV 234

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 235 QMLWGDF 241


>gi|326202057|ref|ZP_08191927.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM
           2782]
 gi|325987852|gb|EGD48678.1| protein of unknown function DUF558 [Clostridium papyrosolvens DSM
           2782]
          Length = 250

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R FV+       +    G+ + +L  VLR +  D +    G   ++ ++I  +  S  
Sbjct: 1   MSRYFVEEAQIANGRINIVGEDFQHLKKVLRAQLKDEVTACCG-GFDYTAEIEEINDSSI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
           I    +           V       K+++++ +IQK VE+G+  I PVIT          
Sbjct: 60  ICIITDVNKNFTESPLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPVITDRCVSRINTD 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           ++    + R +     AA+QC+  T+P I  P T +  ++        +   E   +   
Sbjct: 120 KDAKNKLARWQKIAREAAKQCNRGTIPNILYPITFKEAVEKASQAELAIIPYEKESAVGL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              +     I + +I+IGPEGG+  +E +       V  +SLGPRILR++TA + A++L+
Sbjct: 180 KNIVPRYEGITSGSIIIGPEGGFEEKEVQMAEDRG-VKKISLGPRILRTETAGMVALSLL 238

Query: 238 QAICGD 243
               GD
Sbjct: 239 MYELGD 244


>gi|119945034|ref|YP_942714.1| hypothetical protein Ping_1288 [Psychromonas ingrahamii 37]
 gi|119863638|gb|ABM03115.1| hypothetical protein DUF558 [Psychromonas ingrahamii 37]
          Length = 242

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R +    L + T+   S D   ++ HVLR++ G  I+LFNG  GE  + ++   K  
Sbjct: 2   RIPRFYDPQTLTVATEVNLSKDAIQHI-HVLRLRPGAQIILFNGLGGEVQATLTSAQKRS 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              +         +S +      +  + +R++++IQK+VE+G+  I P+++         
Sbjct: 61  CTALINSFNQTDNESPLHLHLGQVISRGDRMEFVIQKAVELGVNEITPLLSERCGVKLDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q       + +   ++A EQ     +P I+    L    ++ +   ++        S N+
Sbjct: 121 QRMAKKQQQWQKIALAACEQSGRNIIPVIHETEALTTWCESAEQATKLTLHPRAKYSINT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        I  + +LIGPEGG   +E     +L F   L LGPRILR++TAA++A+  +
Sbjct: 181 LP-----PEIKRIRLLIGPEGGLSDQEVTLTETLNFTETL-LGPRILRTETAALSAITAL 234

Query: 238 QAICGD 243
           Q   GD
Sbjct: 235 QCRFGD 240


>gi|256015526|ref|YP_003105535.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915]
 gi|261217356|ref|ZP_05931637.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261220586|ref|ZP_05934867.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261318573|ref|ZP_05957770.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261320229|ref|ZP_05959426.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261323007|ref|ZP_05962204.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261750457|ref|ZP_05994166.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261756957|ref|ZP_06000666.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265986373|ref|ZP_06098930.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996067|ref|ZP_06108624.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|255998186|gb|ACU49873.1| hypothetical protein BMI_II755 [Brucella microti CCM 4915]
 gi|260919170|gb|EEX85823.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260922445|gb|EEX89013.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292919|gb|EEX96415.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261297796|gb|EEY01293.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261298987|gb|EEY02484.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261736941|gb|EEY24937.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261740210|gb|EEY28136.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|262550364|gb|EEZ06525.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264658570|gb|EEZ28831.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 242

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|110798700|ref|YP_696706.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
           ATCC 13124]
 gi|110673347|gb|ABG82334.1| RNA methyltransferase, RsmE family [Clostridium perfringens ATCC
           13124]
          Length = 250

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F    +   T    +G+   ++  VLR+K G+ +++ N +  E+L ++  V K  +
Sbjct: 1   MHKFFTPAHMFSDTHATITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+ E    +     ++       K  ++D ++QK VE+G+  I P IT       +  
Sbjct: 61  SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              +DR+    + A +Q     +P +  P   + +L+  D    +V   E     G    
Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAM 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  +     I NV I++GPEGG+   E E L        ++LGPRILR++TA    ++L+
Sbjct: 181 VNSIEDKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239

Query: 238 QAICGD 243
           Q   GD
Sbjct: 240 QYELGD 245


>gi|261855041|ref|YP_003262324.1| hypothetical protein Hneap_0420 [Halothiobacillus neapolitanus c2]
 gi|261835510|gb|ACX95277.1| protein of unknown function DUF558 [Halothiobacillus neapolitanus
           c2]
          Length = 244

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 13/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+++D  L          ++ +YL +VLR+++G  + +F+G++ E  + +S   +  
Sbjct: 2   RIPRIYLDAALAEGATLPLPAERLNYLKNVLRLRDGQALRVFDGQNHEADATLSLGKREG 61

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +    + S         I +  K  ++D++IQK+VE+G+    PV T  +      +
Sbjct: 62  SLAIGRVAAHSVESPLQTHLIQAMGKGEKMDWVIQKAVELGVTRFTPVSTERSVVELKGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R     I A EQ     LP + P  +LE  L   D   + V          S 
Sbjct: 122 RADKRHARFIDIAIGACEQSGRNFLPRVDPILSLEEALTQTDAALKWVLHPNP----GSG 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L A+A   +VA+LIGPEGG    E E   +  F+ PL+LG R+LR++TA + A++++Q
Sbjct: 178 AALPAVAP-DSVALLIGPEGGLSDHEVEAAIASGFM-PLTLGSRVLRTETAPIVALSVLQ 235

Query: 239 AICGDWY 245
              GD++
Sbjct: 236 MQWGDFF 242


>gi|152998316|ref|YP_001343151.1| hypothetical protein Mmwyl1_4321 [Marinomonas sp. MWYL1]
 gi|150839240|gb|ABR73216.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1]
          Length = 248

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 18/251 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-----KDGEWLSKISY 60
            + R+F+D  L   T        + +L  VLR+K    I +FNG     K G++ + +  
Sbjct: 2   RIPRIFIDSELNENTTIPLPDSAFQHLCKVLRLKSDHPIRVFNGQEFNGKSGQFNATLCD 61

Query: 61  VGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
           V K        ++++ +      V    +  +  R+DY IQKSVE G+ AI+P+ +   +
Sbjct: 62  VEKRSANIHVADFEALNNEPPIQVTIGQTLSRGERMDYAIQKSVEAGVFAIQPLFSERCE 121

Query: 119 ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                          +   ISAAEQC    +P +YPP  L   + N +   ++     + 
Sbjct: 122 VKLQDGRAEKRQQHWQQIAISAAEQCGRGVVPIVYPPMGLSEWVANCNEMLKLTLHHHSA 181

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                 EK         VA+LIGPEGG   +E +      F   ++LGPR+LR++TA + 
Sbjct: 182 KPIRQYEK----PANNQVALLIGPEGGLTEKEVQLSEKSGF-NAITLGPRVLRTETAPIV 236

Query: 233 AMALVQAICGD 243
           A++++ A+ GD
Sbjct: 237 ALSVINALWGD 247


>gi|225686530|ref|YP_002734502.1| 16S ribosomal RNA methyltransferase RsmE [Brucella melitensis ATCC
           23457]
 gi|225642635|gb|ACO02548.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQALRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|15964524|ref|NP_384877.1| hypothetical protein SMc00826 [Sinorhizobium meliloti 1021]
 gi|15073701|emb|CAC45343.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 147/226 (65%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLF++  L    + +A+ +Q++YL +VLR+ EG ++L+FNG+DGEW ++I+ 
Sbjct: 1   MRANFRMQRLFIENALHAGAKHEATREQFNYLINVLRLGEGSSLLVFNGRDGEWRAEIAM 60

Query: 61  VGKSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
             +     V   Q+R Q    D+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKQAVLVAVEQTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              +++RVR   I AAEQC +L +P +  P  LE LL +W  + +IVF DE   S+N L 
Sbjct: 121 KIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L  IA    +A+LIGPEGG+   E++ L S  FVT + LGPRILR
Sbjct: 181 ILEGIAE-RRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILR 225


>gi|85711779|ref|ZP_01042835.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145]
 gi|85694394|gb|EAQ32336.1| hypothetical protein OS145_07806 [Idiomarina baltica OS145]
          Length = 249

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R+F   PL + +    S D + +   VLRM+EG  + LF   D  + + ++ V K  
Sbjct: 2   RVPRIFHPEPLTVNSTVSLSDDAFQHTIKVLRMQEGQALELFCNDDFNYAAVLTSVAKKS 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            + ++   Q  S      V       + +R+D+ +QKSVE+G+ AI P+ +         
Sbjct: 62  AQVEITGAQLNSTESPLFVHLGQVVSRGDRMDFALQKSVELGVNAITPLFSERCGVKLNG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   ISA EQ     +P + P   ++  +K      ++            
Sbjct: 122 DRLEKKQQQWQKIVISACEQSGRSHVPIVLPAILVDDFVKTPFDGLRLTLDPYARV---P 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L ++        + ++IGPEGG+   E E      F  P+ LGPRILR++TAA+ A+A +
Sbjct: 179 LNQIEGANLAQRIQLMIGPEGGFTDIEVEHARHHHF-KPIRLGPRILRTETAAMTALAAI 237

Query: 238 QAICGD 243
           Q   GD
Sbjct: 238 QYEFGD 243


>gi|215919303|ref|NP_820935.2| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA
           493]
 gi|206584188|gb|AAO91449.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
          Length = 260

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ + K  
Sbjct: 21  RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 80

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121
           +   ++ +   +T+ S  ++      ++ ++DY IQK+VE+G+  I P+IT    T+   
Sbjct: 81  VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 140

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +   +   IS  EQ     +P +    +L   L        +V        +NSL   
Sbjct: 141 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 197

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L+QA  
Sbjct: 198 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 254

Query: 242 GD 243
           GD
Sbjct: 255 GD 256


>gi|294853463|ref|ZP_06794135.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL
           07-0026]
 gi|294819118|gb|EFG36118.1| ribosomal RNA small subunit methyltransferase E [Brucella sp. NVSL
           07-0026]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAVHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|307296237|ref|ZP_07576064.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum
           L-1]
 gi|306878039|gb|EFN09262.1| protein of unknown function DUF558 [Sphingobium chlorophenolicum
           L-1]
          Length = 248

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/238 (36%), Positives = 131/238 (55%), Gaps = 4/238 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RL V+  L         G+  HYL  V+R+K  D +LLF+G+ GEW +K   + K  + 
Sbjct: 13  PRLHVETLLGEGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAAKARDIRKRDLV 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  Q+++     D     +PIK  R+D + +K+ E+G+  ++PV+TR       N DR
Sbjct: 73  LEVVSQTKAPENVPDFWLCCAPIKKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNFDR 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +  + + AAEQC    LP +     L+ L+++W  +  + FADET G E   + L A  H
Sbjct: 133 LHAHLVEAAEQCGRTALPDLSEMVKLDALIRDWPDDRWLFFADET-GGEPLADTLKA--H 189

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               A LIGPEGG+   E+E +  +    P+SLGPRILR++TAA+AA +    I GDW
Sbjct: 190 PGPAAFLIGPEGGFDPAEREAIRGVAKAVPVSLGPRILRAETAAIAATSAWMTINGDW 247


>gi|226311620|ref|YP_002771514.1| hypothetical protein BBR47_20330 [Brevibacillus brevis NBRC 100599]
 gi|226094568|dbj|BAH43010.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 252

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 9/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R FV+     + +    GD  H++ +V+R +EG+ I++ +G      +K+ Y+  K +
Sbjct: 1   MQRYFVEPHSFTENELTIVGDDVHHIVNVMRAREGEEIIVSDGAGRSARAKLVYLSAKEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R +V E     +     V       K  +L++++QK  E+G  +  P  +  T      +
Sbjct: 61  RAEVMEMLQEERELPIRVTIGQGLPKGEKLEWILQKGTELGAYSFFPFSSERTIVKLDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     LP +  P +   +L+          A E  GS    
Sbjct: 121 KEAKKLERWRKIVKEAAEQSHRAVLPELLSPVSFREILEAGQSYTHCAIAYEKEGSTTIH 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L  +    ++ +L+GPEGG+  EE     S  F+T +SLGPRILR++TA+   +A   
Sbjct: 181 QVLEEMTASDSLLVLVGPEGGFSPEEVAQAESKGFLT-VSLGPRILRTETASQYVLACAS 239

Query: 239 AIC 241
              
Sbjct: 240 YQF 242


>gi|40889966|pdb|1VHY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
           Hi0303, Pfam Duf558
 gi|40889967|pdb|1VHY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
           Hi0303, Pfam Duf558
          Length = 257

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLR  EG+ + LF+G +  + +KI    K  
Sbjct: 4   RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKS 63

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R ++ IQKSVE+G+  I P+ +         
Sbjct: 64  VKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDA 123

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 124 ERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSIKT 183

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 184 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 238

Query: 238 QAICGD 243
           Q   GD
Sbjct: 239 QICFGD 244


>gi|94496115|ref|ZP_01302693.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58]
 gi|94424294|gb|EAT09317.1| hypothetical protein SKA58_03355 [Sphingomonas sp. SKA58]
          Length = 248

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 8/240 (3%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RL V+  L         G+  HYL  V+R+K  D +LLF+G+ GEW ++   + K  + 
Sbjct: 13  PRLHVETQLGDGVAVPVDGNPAHYLISVMRVKPDDIVLLFDGRSGEWAARARDIRKRDLV 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +   Q+R+  +  D     +PI+  R+D + +K+ E+G+  ++PV+TR       N+DR
Sbjct: 73  LECVAQTRAPEQVPDYWLCCAPIRKGRIDLIAEKACELGVAKLQPVLTRRAVVDKLNLDR 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--ENSLEKLHAI 184
           +  + + AAEQC    LP +     L+ LL NWD    + FADE+ G+  E +L      
Sbjct: 133 LHAHLVEAAEQCGRTALPDLGSLMKLDALLGNWDSRRHLFFADESGGAPLEQTLR----- 187

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           AH    A L+GPEGG+  +E++ + ++P    +SLGPRILR++TAA+AA +   AI GDW
Sbjct: 188 AHPGPAAFLVGPEGGFDPQERDAIQAMPGAVAVSLGPRILRAETAAIAATSAWMAINGDW 247


>gi|153812691|ref|ZP_01965359.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174]
 gi|149831207|gb|EDM86296.1| hypothetical protein RUMOBE_03098 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R FV+     +   Q    G   +++++VLRMK+G+ + + +G   E+   I      
Sbjct: 1   MQRFFVEPHQIDEAAHQIHIIGTDVNHISNVLRMKQGEEVWISDGGQKEYRCAIEAFSAD 60

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                    Q       S +       K ++++ +IQK+VE+G   I PV T+       
Sbjct: 61  EVLLHIIYAQEPDYELPSRIYLFQGLPKADKMELIIQKAVELGAYEIIPVETKRCVVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175
            +     ++R +    SAA+Q   + +P ++   + +  LK  +  + +++  +   G +
Sbjct: 121 GKKAAKKVERWQQIAESAAKQSKRMLIPNVHQVLSFKEALKYAESMDIRLIPYELAKGMQ 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + E L AI    ++ I IGPEGG+  +E E   S     P++LG RILR++TA +A ++
Sbjct: 181 ETKEILAAIEQGQSIGIFIGPEGGFEEKEVEAAISEG-AKPITLGKRILRTETAGLAILS 239

Query: 236 LVQAIC 241
           ++    
Sbjct: 240 VLMFQL 245


>gi|302877374|ref|YP_003845938.1| hypothetical protein Galf_0129 [Gallionella capsiferriformans ES-2]
 gi|302580163|gb|ADL54174.1| protein of unknown function DUF558 [Gallionella capsiferriformans
           ES-2]
          Length = 243

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65
           + R +   P+  +       D  H+ + VLR++EGD++ LF+G   E+   I+   GK +
Sbjct: 1   MPRFYCPPPIPAQGAFNLPADAAHHASRVLRLREGDSVQLFDGTGHEYHGAITDMTGKQV 60

Query: 66  RF-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               + +    +     +    +   + ++D++IQK+ E+G   I+P+ T  +       
Sbjct: 61  VVGDIVHIEADRESPLQIVLAQALCSSEKMDWVIQKATELGATEIQPLATGRSVAKLSAD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176
                 +  +   ISA EQC    LP I+PP  +   L++   +   + +   +   S  
Sbjct: 121 RAAKRTEHWQQVAISACEQCGRNVLPVIHPPVEIGTWLQHMLDSDMSKYILLPQGAKSLQ 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             EK  +        +LIG EGG+   E +      F TP+ LG R++R++TAAVA +A+
Sbjct: 181 EQEKPQS-----GAVLLIGAEGGFTEAESDNALRCGF-TPVRLGARVMRTETAAVAGLAV 234

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 235 LQTLWGDF 242


>gi|158330817|dbj|BAF88302.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
          Length = 283

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 2/241 (0%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
              +RLFV   L   T      +Q HY+A+V+R+     +L+FNG+DGEW + +I    K
Sbjct: 39  FRAQRLFVREDLAADTTFSLPSEQAHYVANVIRLPVRGGLLVFNGRDGEWRATRIEGGKK 98

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            +R  +  Q+R Q   + + Y F+P+K  RLDYM+QK+VEMG G + PV+T++TQ    N
Sbjct: 99  EVRLSIGGQTRPQPAAAGLTYAFAPLKHARLDYMVQKAVEMGAGVLAPVLTQHTQIPRVN 158

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R+    I AAEQC ILT+P +  P  L   L     +  +VF DE     + L  L  
Sbjct: 159 GERMEANAIEAAEQCGILTIPSVRAPQGLSAFLGARPADDMLVFCDEAAPVADPLVALRP 218

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A  P + +LIGPEGG+ ++E+  LH    V  ++LGPRILR+DTA VAA+ALVQA+CGD
Sbjct: 219 AAGGP-ITVLIGPEGGFSADERTLLHRQERVIVIALGPRILRADTAGVAALALVQAVCGD 277

Query: 244 W 244
           W
Sbjct: 278 W 278


>gi|325662164|ref|ZP_08150782.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471613|gb|EGC74833.1| hypothetical protein HMPREF0490_01520 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 246

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64
           ++  FV          + +G   +++ +VLRMK G+ + + +G + ++L +I      K 
Sbjct: 1   MQHFFVVPDQVRDGYIEITGSDVNHMKNVLRMKTGEQLEISDGNNKKYLCEIESLEADKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E Q       S +       K+++++ +IQK+VE+G   + PV T+        +
Sbjct: 61  TARILEEQEAENELPSKLYLFQGLPKSDKMELIIQKAVELGAWEVIPVATKRAVVKLDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 +R    + SAA+Q     +P I      +  L      +  ++  +   G + +
Sbjct: 121 KAAKKRERWSGISESAAKQAGRNVIPEIKQVMNFQEALSYAKSLDVLLIPYELAEGMQAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E++ AI    +V I IGPEGG+  EE +         P++LG RILR++TA +  ++++
Sbjct: 181 KERIQAIQPGQSVGIFIGPEGGFEQEEVKLAMEAGAY-PITLGRRILRTETAGMTMLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|237749444|ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380806|gb|EEO30897.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 242

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64
           + RLF DFPL + T      +   ++  VLR+ EG+ I+LFNG+ GE+ ++I  +   K+
Sbjct: 1   MTRLFCDFPLVVGTNIDLPKETSRHI-QVLRLTEGNEIVLFNGEGGEYSARIISLDRTKT 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +    R      D+    +  +  ++D++I+K+VE+G   I+P+  + +       
Sbjct: 60  NVKILSRHDREVELPYDITLAQALPEAGKMDWIIEKAVELGAAGIQPLAAQRSVVRLNAD 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +T   +A+EQC   TL  I  P      + N     +++F      + +  
Sbjct: 120 RAEKRLARWQTIVTAASEQCGRNTLMEISEPVAFNTFIDNSGGCLRVMFTPRATETLSGW 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  A      + I+IGPEGG+  EE+E       V PLS+G RILR++TA +AA++ + 
Sbjct: 180 ARKQA---PQAITIMIGPEGGFSPEEEELAIQNG-VIPLSMGSRILRTETAGMAAISAIN 235

Query: 239 AIC 241
           AI 
Sbjct: 236 AIW 238


>gi|291522746|emb|CBK81039.1| RNA methyltransferase, RsmE family [Coprococcus catus GD/7]
          Length = 246

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV            +G   +++ +VLRM  G+ + + +G+  ++  +I+ + K  +
Sbjct: 1   MPRFFVGAEQISDKDIVITGTDVNHIRNVLRMTPGEEVTVSDGQGMDYFCRIAELTKEEV 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R  +     S     + +       K ++++ +IQK+VE+G+  I PV T+        +
Sbjct: 61  RLDIVDSWHSFVELPTKIYLFQGLPKADKMELIIQKAVELGVYEIVPVATKRAVVKLDPK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                  R ++   SAA+Q     +P I    + E  L+  +  +  ++  ++  G +++
Sbjct: 121 KEEKKRLRWQSIAESAAKQAGRALIPQIATCISFEKALRMCNGLDAALIPYEKAEGMQHA 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +++ A+    ++ I IGPEGG+   E E   +   + P++LG RILR++TA +  ++++
Sbjct: 181 RDQVRALHGKHSIGIFIGPEGGFEESEIEAARAAGAI-PITLGHRILRTETAGLTMLSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFEL 243


>gi|296533751|ref|ZP_06896298.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296265927|gb|EFH12005.1| RsmE family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 242

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/239 (38%), Positives = 143/239 (59%), Gaps = 4/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + RL V   L    +      Q HYL  V+R KEGD + LFNG+DGEWL++I+ + K  +
Sbjct: 3   IPRLHVAADLAEAAEIPGEPGQGHYLGQVMRRKEGDPVHLFNGRDGEWLARIAALRKDRV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           +F+ E + R Q    D++ + +P+K + +D++++K+ E+G+ +IRPV T        N++
Sbjct: 63  QFRPESRLRPQQSGPDLRLLLAPVKRDAMDWIVEKATELGVRSIRPVFTARCVIGRVNLE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+ T    AAEQC+ L +P I  P  L   L  WD    +V   +  G   SL  + A  
Sbjct: 123 RLSTIAREAAEQCERLDVPEIAAPLDLHAALDAWDGAPLLV--GDARGKAPSLNVVLAGK 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P + +L+GPEGG+  +E + +   PFV+P +LGPRILR++TAAVA +A++QA+ GDW
Sbjct: 181 APP-LGLLVGPEGGFTDQELDAVRRRPFVSPAALGPRILRAETAAVAGLAVLQALAGDW 238


>gi|296284223|ref|ZP_06862221.1| 16S ribosomal RNA methyltransferase RsmE [Citromicrobium
           bathyomarinum JL354]
          Length = 255

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 128/238 (53%), Gaps = 4/238 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV+  L         G++ HYL  V+R+ EGD ++L +   GEW +++  V K  + 
Sbjct: 13  PRLFVEDELGEGRTIALYGNRAHYLGKVMRVSEGDTVILCDDLTGEWAARVGQVDKRRVD 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V  + R +    D+    + +K +R D +++K+ E+G+ AIRPV+TR       N +R
Sbjct: 73  VTVVERLREREAVPDLWLCPALLKKDRFDLVLEKATELGVAAIRPVVTRRCVADKLNPER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
             T    AAEQC    LP +  P  L+ LL +W     + FADE  G E++        H
Sbjct: 133 AATIVTEAAEQCARTALPQVAGPVKLDALLADWPAERALFFADEE-GGEDAASAF--ARH 189

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               AIL GPEGG+   E+  + +LP   P++LGPRILR +TA +AA+++  A  GDW
Sbjct: 190 GAPAAILTGPEGGFDDAERAAIRALPQAIPITLGPRILRGETATIAAISIWMAQAGDW 247


>gi|168204735|ref|ZP_02630740.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str.
           JGS1987]
 gi|169343763|ref|ZP_02864762.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|169298323|gb|EDS80413.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|170663617|gb|EDT16300.1| RNA methyltransferase, RsmE family [Clostridium perfringens E str.
           JGS1987]
          Length = 250

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F    +   T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K  +
Sbjct: 1   MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+ E    +     ++       K  ++D ++QK VE+G+  I P IT       +  
Sbjct: 61  SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              +DR+    + A +Q     +P +  P   + +L+  D    +V   E     G    
Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKGVLEKIDQLDLMVIPYENATGYGIRAM 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  +     I NV I++GPEGG+   E E L        ++LGPRILR++TA    ++L+
Sbjct: 181 VNSIEDKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239

Query: 238 QAICGD 243
           Q   GD
Sbjct: 240 QYELGD 245


>gi|304313284|ref|YP_003812882.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1]
 gi|301799017|emb|CBL47260.1| Protein of unknown function (DUF558) [gamma proteobacterium HdN1]
          Length = 248

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+F + PL   T+   +    H++  VLRMK GD +LLFNG  GE+  +I   GK  
Sbjct: 2   RIPRIFQEIPLLEGTKVTLTESGSHHVTQVLRMKPGDQVLLFNGTGGEYFGEIEATGKRG 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
              +        + S +      +  K  R DY IQK+VE+G+  I P+ +R  +     
Sbjct: 62  VEVLLTYFNEVDRASPLSVHLGQVIGKGERFDYAIQKAVELGVTEITPLFSRRCEVKLNG 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + + +   ++A EQ  +  +P I+ P  L    +    + + +   E       
Sbjct: 122 PRLDKKLQQWKHLAVAACEQSGLNIIPQIHAPVALAEWAETVQADARWILHTEGEPHNPF 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++        ++A  +GPEGG+   E  ++    F   +S+GPRI R++TA V  ++L+
Sbjct: 182 TQQ-----APQSLAFAVGPEGGFEDTEVSSVRERGF-DCVSMGPRIWRTETAPVVMLSLL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QYHWGD 241


>gi|163816746|ref|ZP_02208109.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759]
 gi|158448003|gb|EDP24998.1| hypothetical protein COPEUT_02936 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           + R FVD     I T  + +G   +++ +VLR+K G+ IL+ +G+  ++  +IS +    
Sbjct: 1   MNRFFVDIDGRDIGTDIEITGGDVNHIKNVLRLKIGEEILVSDGRGRDYTCRISRIDPDK 60

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   +E  S +       V       K++++D ++QK VE+G+  I PV T  T      
Sbjct: 61  VVCNIEDISDNFAELPVKVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVFTSRTIVKLDQ 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
           +      +R RT   SAA+Q     +P I  P +    L      +  I+  +E  G E 
Sbjct: 121 KKATKKTERYRTIAESAAKQSGRGIVPEITEPVSFAKALDMASELDMNIIPYEEAEGIEE 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S + +  +    ++ I IGPEGG+  EE E   +      ++LG RILR++TA +A MA+
Sbjct: 181 SRQIIANVRGKRSLGIFIGPEGGFAREEVEEAVAAG-AECITLGHRILRTETAGLAVMAI 239

Query: 237 VQ 238
           + 
Sbjct: 240 IM 241


>gi|238752316|ref|ZP_04613795.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei
           ATCC 43380]
 gi|238709477|gb|EEQ01716.1| Ribosomal RNA small subunit methyltransferase E [Yersinia rohdei
           ATCC 43380]
          Length = 232

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 14/235 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSR 74
              T+   S D  +++  VLRM EG ++ LF+G +  + ++I    K   I    E Q  
Sbjct: 2   QANTEIALSDDAANHVGRVLRMTEGQSLQLFDGSNQVFAAEIIKADKKNLIVRLAEGQIA 61

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
                 ++       +  ++++ +QKS+E+G+  I P+ +         +     + + +
Sbjct: 62  DCESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFSERCGVKLDGERLAKKIQQWQ 121

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I+A EQC   T+P I     L       D + ++        S N+L      A + 
Sbjct: 122 KIAIAACEQCGRNTIPEIRAAMQLTDWCAEQDDSLKLNLHPRASNSINTLP-----ASLN 176

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            V +LIGPEGG  ++E      L F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 177 KVRLLIGPEGGLSADEIAMTSRLGF-TDILLGPRVLRTETTALTAITALQVRFGD 230


>gi|18311008|ref|NP_562942.1| hypothetical protein CPE2026 [Clostridium perfringens str. 13]
 gi|168208728|ref|ZP_02634353.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str.
           ATCC 3626]
 gi|168212937|ref|ZP_02638562.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE
           str. F4969]
 gi|18145690|dbj|BAB81732.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170712974|gb|EDT25156.1| RNA methyltransferase, RsmE family [Clostridium perfringens B str.
           ATCC 3626]
 gi|170715557|gb|EDT27739.1| RNA methyltransferase, RsmE family [Clostridium perfringens CPE
           str. F4969]
          Length = 250

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F    +   T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K  +
Sbjct: 1   MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+ E    +     ++       K  ++D ++QK VE+G+  I P IT       +  
Sbjct: 61  SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+    + A +Q     +P +  P   + +L+  D    +V   E          
Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAM 180

Query: 181 LHAIAH---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +++I +   I NV I++GPEGG+   E E L        ++LGPRILR++TA    ++L+
Sbjct: 181 VNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239

Query: 238 QAICGD 243
           Q   GD
Sbjct: 240 QYELGD 245


>gi|197303723|ref|ZP_03168760.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC
           29176]
 gi|197297243|gb|EDY31806.1| hypothetical protein RUMLAC_02452 [Ruminococcus lactaris ATCC
           29176]
          Length = 249

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           ++  F D       + +  G   +++ +VLRMKEG+ + + +G    +L +I  Y G   
Sbjct: 1   MQHFFADRSWVQGDKIRLEGSDVNHMKNVLRMKEGEEVQVSDGTGNAYLCQIEGYEGNQA 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+  ++   T+  S +       K ++++ ++QK+VE+G+  I P   + +      +
Sbjct: 61  VLKIREKTEKDTELPSKIWLFQGLPKGDKMELIVQKAVELGVYGIVPFAAKRSVVRLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177
                  R +     AAEQ     +P +    T    L+       I+   E   G + +
Sbjct: 121 KAGKKQIRWQAIAKGAAEQSGRGLIPEVEIVKTYAEALEFAKELDVILVPYELEEGMKAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  + AI    +V I IGPEGG+  +E     +   V P++LG RILR++TA +  ++++
Sbjct: 181 MSIIEAIRPGQSVGIFIGPEGGFEEQEIGQARNAGAV-PVTLGRRILRTETAGITTLSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|224369186|ref|YP_002603350.1| hypothetical protein HRM2_20880 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691903|gb|ACN15186.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 250

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R ++        +   +G +  +L  VLR+  GD + L +G+     ++I  +  +  
Sbjct: 1   MRRFYIKTDSICNGRAVITGQEARHLGTVLRLGPGDRVELVDGRGTIARAEIETLSHNTA 60

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 S S        +      +K  ++D +++   E+G+    P  +  +      +
Sbjct: 61  VFTILDSSSPGAESPVHITLAQGMLKDKKMDMLVRHLTELGICQWIPFYSSRSIPKPDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177
             +  M+R       A +QC    LP I  P   + LLK + D++ +I F +      ++
Sbjct: 121 RIYSRMERWNKIAREALKQCGRSMLPLIEDPIPFDQLLKTSTDYDGKIAFWENATAPIHT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++   ++     + +LIGPEGG+ S E +      F +  SLGPRILR++TA++ A ALV
Sbjct: 181 IQT-PSMEPAKKIIVLIGPEGGFSSFEIDAARENGF-SSCSLGPRILRAETASLTAAALV 238

Query: 238 QAICGD 243
           Q + GD
Sbjct: 239 QYLFGD 244


>gi|82701513|ref|YP_411079.1| hypothetical protein Nmul_A0379 [Nitrosospira multiformis ATCC
           25196]
 gi|82409578|gb|ABB73687.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 255

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 17/254 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R +    +      +      H+ A VLR++ GD ++LFNG  GE+   I    K   
Sbjct: 3   LPRFYCPIEILAGQTLELPSAVAHHAARVLRLEAGDEVVLFNGDGGEFTCVILRASKQGV 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK--TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             V  +     ++S +  + +       ++D+++QK+VE+G+  I+P+IT+ +      +
Sbjct: 63  DVVVERHVQVERESPLTILLAQAVCMGEKMDWIVQKAVELGVTRIQPLITKQSVVRLGGE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSE 175
                +  ++   ISA EQC    +P + P  TL   L       ++     + + C   
Sbjct: 123 RGEKRVSHLQKVVISACEQCGRNHVPEVLPLATLRNWLGRQTEARRMSSDSLSPDACFML 182

Query: 176 NS-----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +      L      ++I ++ +L+GPEGG+  +E+       F+ PL LG RILR+++AA
Sbjct: 183 SPFATKGLRDFKHSSNIGSIILLVGPEGGFTQDEEAAAMVAGFI-PLRLGHRILRTESAA 241

Query: 231 VAAMALVQAICGDW 244
           +AA+  +QA+ GD+
Sbjct: 242 LAAVGAMQALWGDY 255


>gi|295109582|emb|CBL23535.1| RNA methyltransferase, RsmE family [Ruminococcus obeum A2-162]
          Length = 247

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R FV+     +   Q    G   +++++VLRMK+G+ + + +G   E+   I      
Sbjct: 1   MQRFFVEPHQIDEGAHQIHILGSDVNHISNVLRMKQGEELWISDGGKKEYRCTIEDFSSD 60

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                    Q       S +       K ++++ +IQK+VE+G   + PV T+       
Sbjct: 61  EVLLHIIYAQEPDYELPSRIYLFQGLPKADKMELIIQKAVELGAYEVIPVETKRCVVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175
            +     ++R +    SAA+Q   + +P ++   T +  LK  +  + +++  +   G +
Sbjct: 121 GKKAAKKVERWKQIAESAAKQSKRMLIPNVHEVLTFKEALKYAEAMDIRLIPYELAKGMQ 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + E L  I    +V I IGPEGG+  +E ET  S     P++LG RILR++TA +A ++
Sbjct: 181 ETKEILADIQPGQSVGIFIGPEGGFEEKEVETAISEG-AKPITLGKRILRTETAGLAILS 239

Query: 236 LVQAIC 241
           ++    
Sbjct: 240 VLMFQL 245


>gi|29726851|pdb|1NXZ|A Chain A, X-Ray Crystal Structure Of Protein Yggj_haein Of
           Haemophilus Influenzae. Northeast Structural Genomics
           Consortium Target Ir73.
 gi|29726852|pdb|1NXZ|B Chain B, X-Ray Crystal Structure Of Protein Yggj_haein Of
           Haemophilus Influenzae. Northeast Structural Genomics
           Consortium Target Ir73
          Length = 246

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++    L  +TQ   S D  +++A VLR  EG+ + LF+G +  + +KI    K  
Sbjct: 1   RIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKS 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           ++ ++  +  +  +    +       +  R ++ IQKSVE+G+  I P+ +         
Sbjct: 61  VKVEILGRELADKESHLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDA 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I P   L+      D   ++        S  +
Sbjct: 121 ERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPRAHYSIKT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  + A      V +LIG EGG  ++E        F T + LG R+LR++TA++AA++ +
Sbjct: 181 LPTIPA----GGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISAL 235

Query: 238 QAICGD 243
           Q   GD
Sbjct: 236 QICFGD 241


>gi|254482677|ref|ZP_05095915.1| conserved hypothetical protein TIGR00046 [marine gamma
           proteobacterium HTCC2148]
 gi|214037036|gb|EEB77705.1| conserved hypothetical protein TIGR00046 [marine gamma
           proteobacterium HTCC2148]
          Length = 243

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L  ++          +LA  LRM+E   ++LF+G+ GE+ + I+ VGK  
Sbjct: 2   RIPRIYAGQVLQAESSFDLEPGPSQHLARALRMQEAGQLILFDGRGGEYPATITSVGKKC 61

Query: 66  RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
              +  +           +    S  +  R+D++IQK+ E+G+  + P++T  T+     
Sbjct: 62  VSVLTGQRHDIEVESPLAIHLGISISRGERMDWVIQKATELGVTHVSPLLTERTEVKLKA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                     +   ISA EQC    LP I P T L   L +     ++V           
Sbjct: 122 DRAEKKRQHWQQIAISACEQCGRNRLPVINPLTLLPKWLNDSQAELKLVLHHRA------ 175

Query: 178 LEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            E L A +  P ++ +LIGPEGG   +E        F   L LG R+LR++TA +AA+++
Sbjct: 176 -ENLSAQSTPPRSIDLLIGPEGGLSPDEIHLAEQRAF-HALRLGDRVLRTETAPLAALSI 233

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 234 LQARWGD 240


>gi|46914675|emb|CAG21452.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 225

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80
            S D  +++  V+RM+ G  +LLF+G D E+ + IS   K    +V+ Q R++       
Sbjct: 2   LSDDAANHVGRVMRMQVGQEVLLFDGSDAEFPAVISTASKK-NVEVDIQCRNENSIESPL 60

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           ++       +  ++++ IQKSVE+G+  I P+I+         +     + + +   ++A
Sbjct: 61  NIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERCGVKLNAERFEKKLSQWQKIVVAA 120

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   LE          ++        S N+L +      +  V +LI
Sbjct: 121 CEQCGRNVIPEIRPVMKLEDWCAEEYDGLKLNLHPRANYSINTLPE-----PVTKVRLLI 175

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  +EE        F   + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 GPEGGLSAEEISMTEQYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223


>gi|182626905|ref|ZP_02954639.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str.
           JGS1721]
 gi|177907755|gb|EDT70367.1| RNA methyltransferase, RsmE family [Clostridium perfringens D str.
           JGS1721]
          Length = 250

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F    +   T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K  +
Sbjct: 1   MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKAGEKVVVNNLESEEFLGEVEEVNKQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+ E    +     ++       K  ++D ++QK VE+G+  I P IT       +  
Sbjct: 61  SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              +DR+    + A +Q     +P +  P   + +L+  D    +V   E     G    
Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPQVLEPMDFKEVLEKIDQLDLMVIPYENATGYGIRAM 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  +     I NV I++GPEGG+   E E L        ++LGPRILR++TA    ++L+
Sbjct: 181 VNSIEDKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIITLGPRILRTETAGFTCISLI 239

Query: 238 QAICGD 243
           Q   GD
Sbjct: 240 QYELGD 245


>gi|88705487|ref|ZP_01103198.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88700577|gb|EAQ97685.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 245

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 19/247 (7%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F    L   +      +   ++A  LRM+ GD++ LF+G   E   +IS + KS   
Sbjct: 4   PRFFTAQTLSEGSTLTLEKEPSRHIAKALRMRAGDSLCLFDGSGIEAHGEISDLDKSQVS 63

Query: 68  KVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            +    +  T++S +    I +  + +R+D ++QK+ E+G+  I P+I+  T        
Sbjct: 64  VIVKSIQQPTRESPLDTVLIIALSRGDRMDTVVQKATELGVTEIWPMISERTGVRLDETR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSEN 176
                       ISA EQC    LP +  PT+ E  L+     D + +++    T    +
Sbjct: 124 LARKRQHWERIAISACEQCGRNRLPTVETPTSFEETLQRAAKGDDSLRLILH--TSAHPS 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L       H  ++ +L+GPEGG+  EE        F   L +GPRILR++TA +  +AL
Sbjct: 182 PLPT-----HCKSLTLLVGPEGGFSDEEVTAALDQGFC-ALQMGPRILRTETAPLVGLAL 235

Query: 237 VQAICGD 243
            QA  GD
Sbjct: 236 AQARWGD 242


>gi|163675614|gb|ABY39724.1| conserved hypothetical protein [Brucella suis ATCC 23445]
          Length = 242

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 105/249 (42%), Positives = 146/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 LGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|160940893|ref|ZP_02088233.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436137|gb|EDP13904.1| hypothetical protein CLOBOL_05785 [Clostridium bolteae ATCC
           BAA-613]
          Length = 249

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +   FV+         + +G   +++ +VLR+++G+ +L+ +G   ++L +   + G+ +
Sbjct: 1   MHHFFVNPEQVEDGLIRITGSDVNHIKNVLRIRQGEEMLVSDGTGRDYLCQAEEIAGQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++ E +   +   S +       K+++++++IQK+VE+G   I PV TR T      +
Sbjct: 61  TVRILETEEEGRELPSRIWLFQGLPKSDKMEFIIQKAVELGAAGIVPVSTRNTVVKLDPK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175
                + R +    SAA+Q     +P +    TL+     +++   + +++  +   G +
Sbjct: 121 KEEAKVKRWQAIAESAAKQSKRSLVPRVSGIMTLKEAFDYVESQGFSVRLIPYEHEAGMD 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +  +L A     ++A+ IGPEGG+   E E   S   V P+SLG RILR++TA +A ++
Sbjct: 181 GTKTELDAAGPGQDIAVFIGPEGGFDEREIELALSKG-VRPISLGRRILRTETAGLALLS 239

Query: 236 LVQAIC 241
           ++    
Sbjct: 240 VLMMRL 245


>gi|228879506|ref|YP_457473.2| 16S ribosomal RNA methyltransferase RsmE [Erythrobacter litoralis
           HTCC2594]
          Length = 276

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 128/262 (48%), Gaps = 25/262 (9%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66
            RLFV  P+   T     G+  HYL  V+R+  GD ++L +   GEW  K++ V K I  
Sbjct: 13  PRLFVPEPIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRIVT 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +   + R + +  D     + +K +R D +++K+ E+G+ AIRPV+TR       N +R
Sbjct: 73  LEPVEKLREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---------------- 170
            R     AAEQC    LP +  P  L+ LL++W  +  + FADE                
Sbjct: 133 ARAIVTEAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSES 192

Query: 171 ------TCGSENSLEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222
                   G +  L+   A         A+LIGPEGG+   E++ + + P    ++LGPR
Sbjct: 193 LRRQGPQAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPR 252

Query: 223 ILRSDTAAVAAMALVQAICGDW 244
           ILR +TAA+AA AL     GDW
Sbjct: 253 ILRGETAAIAATALWMGTVGDW 274


>gi|78486164|ref|YP_392089.1| hypothetical protein Tcr_1823 [Thiomicrospira crunogena XCL-2]
 gi|78364450|gb|ABB42415.1| Conserved hypothetical protein with DUF 558 [Thiomicrospira
           crunogena XCL-2]
          Length = 245

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R ++        +      Q HY   VLR+K+   I +F+GK  +  + +   G+  
Sbjct: 2   RIPRFYLPVTFQEGERISLDKAQAHYALTVLRLKDQRPIEVFDGKGHQAHATLQVTGRKT 61

Query: 66  RFKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
                 +  S   +S +Q   +    K +R+DY IQKSVE+G+ AI+P+ T         
Sbjct: 62  ADVFIERCESVNTESPLQTVLLQGISKGDRMDYTIQKSVELGVTAIQPLFTERCDVKLTG 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   + +   I+A EQ +   +P + PP +    L        +V +      E++
Sbjct: 122 DRLDKKRTQWQDIAINACEQSNRNVVPAVLPPLSYSDWLSTQTLVSGLVLSPTA---EHT 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+ L +     +V +LIGPEGG   EE     +   +TP+ LGPRILR++TA V  ++ +
Sbjct: 179 LQTLPSSLSEQSVHLLIGPEGGLTDEEVLQ-GTQKGLTPIQLGPRILRTETAGVVVLSAL 237

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 238 QTLWGDF 244


>gi|90412046|ref|ZP_01220053.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK]
 gi|90327024|gb|EAS43403.1| hypothetical protein P3TCK_24711 [Photobacterium profundum 3TCK]
          Length = 225

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80
            S D  +++  V+RM+ G  +LLF+G + E+ + IS   K    +V+ Q R++       
Sbjct: 2   LSDDAANHVGRVMRMQVGQEVLLFDGSNAEFPAVISAASKK-NVEVDIQCRNENSIESPL 60

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           ++       +  ++++ IQKSVE+G+  I P+I+         +     + + +   I+A
Sbjct: 61  NIHLGQVISRGEKMEFTIQKSVELGVMTITPLISERCGVKLNAERFEKKLSQWQKIVIAA 120

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   LE          ++        S N+L +      +  V +LI
Sbjct: 121 CEQCGRNVIPEIRPVMKLEDWCAEEYDGLKLNLHPRANYSINTLPE-----PVSKVRLLI 175

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  +EE        F   + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 GPEGGLSAEEISMTEQYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223


>gi|331085961|ref|ZP_08335044.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406884|gb|EGG86389.1| hypothetical protein HMPREF0987_01347 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 246

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64
           ++  FV          + +G   +++ +VLRM+ G+ + + +G + ++L +I      K 
Sbjct: 1   MQHFFVVPDQVRDGYIEITGSDVNHMKNVLRMRTGEQLEISDGNNKKYLCEIESLEADKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E +       S +       K+++++ +IQK+VE+G+  + PV T+        +
Sbjct: 61  TARILEEREAENELPSKLYLFQGLPKSDKMELIIQKAVELGVWEVIPVATKRAVVKLDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 +R    + SAA+Q     +P I      +  L      +  ++  +   G + +
Sbjct: 121 KAAKKRERWSGISESAAKQAGRNVIPEIKQVMNFQEALSYAKSLDVLLIPYELAEGMQAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E++ AI    +V I IGPEGG+  EE +         P++LG RILR++TA +  ++++
Sbjct: 181 KERIQAIQPGQSVGIFIGPEGGFEQEEVKLAMEAGAY-PITLGRRILRTETAGMTMLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|91794324|ref|YP_563975.1| hypothetical protein Sden_2974 [Shewanella denitrificans OS217]
 gi|91716326|gb|ABE56252.1| protein of unknown function DUF558 [Shewanella denitrificans OS217]
          Length = 244

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R++     L I        D   ++  VLRM EG+ ++LFNG   ++L+ I+   K 
Sbjct: 2   RVPRIYQSIAQLEIGQAYSLDEDGAAHIGRVLRMSEGEQVMLFNGDGKDYLADITSASKK 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                         +S +      +  + +R+++ IQKSVE+G+  I P+ +        
Sbjct: 62  NITITIISMEDNRSESGLNLHLGQVISRGDRMEFTIQKSVELGVNTITPLFSERCGVKLT 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     +++ +   ISA EQ     +P I P   +    +      ++           
Sbjct: 122 GERLEKKINQWQKIVISACEQSGRSQVPLIRPAMDVAAWCQEPSQALKLNLHPRASHGIK 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L         P V +LIGPEGG  SEE        F T + LGPR+LR++TA++ A+  
Sbjct: 182 GLTL-----ENPRVRLLIGPEGGLSSEEILMTEQCDF-TDVLLGPRVLRTETASLTAITA 235

Query: 237 VQAICGD 243
           +Q   GD
Sbjct: 236 LQLTFGD 242


>gi|118590628|ref|ZP_01548029.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614]
 gi|118436604|gb|EAV43244.1| hypothetical protein SIAM614_05658 [Stappia aggregata IAM 12614]
          Length = 252

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 100/233 (42%), Positives = 149/233 (63%), Gaps = 6/233 (2%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           K   +++RLF+   L    + +A   Q +YL +VLR+K+GD +L+FNG DGEWL+KI   
Sbjct: 3   KYEFNMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDYVLVFNGTDGEWLAKIVSN 62

Query: 62  GKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G+     ++  ++R QT  +D+ Y+F+P+K  RLDYM+QK+VEMG G+++PV+T++TQ +
Sbjct: 63  GRRDCTLQLMERTREQTSANDLMYMFAPLKHARLDYMVQKAVEMGAGSLKPVLTQHTQAS 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENS 177
             N++R+    I AAEQC +L +P +  P  L  +L  W       +++F DE  G+ N 
Sbjct: 123 RINLERMEANVIEAAEQCGVLAVPEVLAPQPLADVLSVWAEAQPGRRLLFCDEAEGTNNP 182

Query: 178 LEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L  L  +       +AILIGPEGG+  EE+  L SL FVTP+ LGPRILR+DT
Sbjct: 183 LLSLAQMKENGPQPLAILIGPEGGFSEEERSLLRSLDFVTPIPLGPRILRADT 235


>gi|226952621|ref|ZP_03823085.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226836610|gb|EEH68993.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 239

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L      + +   +H+   VLR KE +  + FNGK GE+L  ++ + K   
Sbjct: 1   MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTVINKKNA 60

Query: 67  FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                Q     +T   +V       K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +D  R+  I+A EQC +  +P I  P +L   +K+     + V A     +   L
Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                    P++A+LIGPEGG    E ET +   F     +G R+LR++TA V A++++ 
Sbjct: 181 ------NSTPDIALLIGPEGGLSETEIETANQYQF-KNWCIGDRVLRTETAPVVALSILN 233

Query: 239 AIC 241
              
Sbjct: 234 YHF 236


>gi|161831038|ref|YP_001597773.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii RSA
           331]
 gi|212211957|ref|YP_002302893.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii
           CbuG_Q212]
 gi|161762905|gb|ABX78547.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
 gi|212010367|gb|ACJ17748.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
          Length = 244

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ + K  
Sbjct: 5   RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121
           +   ++ +   +T+ S  ++      ++ ++DY IQK+VE+G+  I P+IT    T+   
Sbjct: 65  VEITIDSKEAGRTESSLFIELGQGISRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +   +   IS  EQ     +P +    +L   L        +V        +NSL   
Sbjct: 125 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 181

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L+QA  
Sbjct: 182 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 238

Query: 242 GD 243
           GD
Sbjct: 239 GD 240


>gi|92112185|ref|YP_572113.1| hypothetical protein Csal_0049 [Chromohalobacter salexigens DSM
           3043]
 gi|91795275|gb|ABE57414.1| 16S rRNA m(3)U-1498 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 242

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 15/244 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            R+ V   L    +         ++A  LR++EG  + LF+G+  E  ++I  VG+  +R
Sbjct: 4   PRIHVAATLVAAAELTLPEGASRHVAGALRLREGAALRLFDGEGHEADAEIVAVGRREVR 63

Query: 67  FKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            ++   +         V    +  K +R+DY IQK+ E+G+ AI P+ T +       + 
Sbjct: 64  VRITAVTEGGAESPLAVHLGQAISKGDRMDYAIQKATELGVAAITPLYTEHGDVRLKGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +   +SA EQC    +P ++PP TL+  L   D   ++V    T        
Sbjct: 124 EAKKLAHWQAVAVSACEQCGRSRVPTVHPPQTLDAWLARRDETLRLVLHPSTD------T 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                + +  VA+L+GPEGG    E +T  +  F   L+LGPRILR++TA V A+ L+Q 
Sbjct: 178 TWRHASDVARVALLVGPEGGLSPNEIDTARAADFA-ALTLGPRILRTETAPVVALTLLQY 236

Query: 240 ICGD 243
             GD
Sbjct: 237 HFGD 240


>gi|294649934|ref|ZP_06727326.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824163|gb|EFF82974.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 239

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L      + +   +H+   VLR KE +  + FNGK GE+L  ++ + K   
Sbjct: 1   MNRFYIETELNTGNTIELTESVFHHWVRVLRAKEQEQAIFFNGKGGEYLVTLTEINKKNA 60

Query: 67  FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                Q     +T   +V       K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  LVSIDQFNKLDRTAPFNVVLGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +D  R+  I+A EQC +  +P I  P +L   +K+     + V A     +   L
Sbjct: 121 RDQKKLDHWRSVAIAACEQCGMNRVPEILAPISLNDWVKSELPTSRFVLAPNKDQTNILL 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                    P++A+L+GPEGG    E ET +   F     +G R+LR++TA V A++++ 
Sbjct: 181 ------NSTPDIALLVGPEGGLSETEIETANQYQF-KNWCIGDRVLRTETAPVVALSILN 233

Query: 239 AIC 241
              
Sbjct: 234 YHF 236


>gi|212217753|ref|YP_002304540.1| 16S ribosomal RNA methyltransferase RsmE [Coxiella burnetii
           CbuK_Q154]
 gi|212012015|gb|ACJ19395.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
          Length = 270

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ + K  
Sbjct: 31  RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 90

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121
           +   ++ +   +T+ S  ++      ++ ++DY IQK+VE+G+  I P+IT    T+   
Sbjct: 91  VEITIDSKEAGRTESSLFIELGQGIFRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 150

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +   +   IS  EQ     +P +    +L   L        +V        +NSL   
Sbjct: 151 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 207

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L+QA  
Sbjct: 208 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 264

Query: 242 GD 243
           GD
Sbjct: 265 GD 266


>gi|150390795|ref|YP_001320844.1| hypothetical protein Amet_3045 [Alkaliphilus metalliredigens QYMF]
 gi|149950657|gb|ABR49185.1| protein of unknown function DUF558 [Alkaliphilus metalliredigens
           QYMF]
          Length = 254

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 7   LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FV      +        GD   ++  VLR+  GD + + +G+  E++ +I  + K 
Sbjct: 1   MNRFFVVPSQVNQQARTISIVGDDVKHIGKVLRLVVGDLVEVCDGQALEYIGRIDEISKE 60

Query: 65  -IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +   +E Q    T+    V+      K  +++ +IQK+ EMG+  I PV+T  T     
Sbjct: 61  QVTLSIEKQENIFTEPPIQVRLYQGIPKATKMELIIQKTTEMGISDIIPVMTDRTIVQFN 120

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172
             ++    ++R +     A++Q     +P I+ P T    L+  + N   V A E     
Sbjct: 121 NEKDREKKVERWQKIADEASKQSKRGKIPRIHIPMTYTKALEACNENDLNVLAYEKEKTM 180

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           G +  +  L  I  + ++ I IGPEGG+  +E E   S   V  ++LGPRILR++TA  A
Sbjct: 181 GLKALIASLVEITEVKSIGIWIGPEGGFTGKEIEKALSHD-VRSITLGPRILRTETAGFA 239

Query: 233 AMALVQAICGD 243
            ++++    GD
Sbjct: 240 VLSMLMYELGD 250


>gi|89074101|ref|ZP_01160600.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34]
 gi|89050037|gb|EAR55563.1| hypothetical protein SKA34_22077 [Photobacterium sp. SKA34]
          Length = 225

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQS 80
            S D  +++  V+RM+ G  +L+F+G + E+ + I+   K    +VE QSR +       
Sbjct: 2   LSDDAANHVGRVMRMQAGQELLMFDGSNAEFPAVITNASKK-SVEVEIQSRVENNIESPL 60

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134
           D+       + +++++ IQKSVE+G+  I P+I+         +     +++ +   I+A
Sbjct: 61  DIHLGQVISRGDKMEFTIQKSVELGVNTITPLISERCGVKLNAERFEKKLEQWQKIAIAA 120

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQC    +P I P   LE          ++        S N+L        + N+ +LI
Sbjct: 121 CEQCGRNVVPTIRPVMKLEQWCAEEYDGLKLNLHPRAKYSINTLPT-----PVTNLRLLI 175

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG  +EE        F   + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 GPEGGLSAEEIGMTEEYKFDE-ILLGPRVLRTETTAMTAITALQVRFGD 223


>gi|294501300|ref|YP_003565000.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium QM B1551]
 gi|294351237|gb|ADE71566.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium QM B1551]
          Length = 250

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      +     + D  H+++ V+RM EG   +  N +    L KI  +  +  
Sbjct: 1   MQRYFLPNDQFQEQSVIVTQDDAHHISRVMRMNEGSQFIACNEQGQAALCKIENISANEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E+ S  +     V  +    K ++L+ +IQK  E+G     P I   +      +
Sbjct: 61  KASIIEWISEEKELPVHVTIVNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   +DR       AAEQ     +P +  P + + L++        V A E    +   
Sbjct: 121 KSQKKLDRWNKIAKEAAEQSHRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGET 180

Query: 179 EKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             LH    A+    +V +++GPEGG   +E E L    F      GPRILR++TA + A+
Sbjct: 181 SHLHAVLSALKPGNSVLVVVGPEGGLTEQEVEVLEENEFTIS-GFGPRILRAETAPLYAL 239

Query: 235 ALVQA 239
           + +  
Sbjct: 240 SAISY 244


>gi|325983172|ref|YP_004295574.1| ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
           AL212]
 gi|325532691|gb|ADZ27412.1| Ribosomal RNA small subunit methyltransferase E [Nitrosomonas sp.
           AL212]
          Length = 248

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R +    +      + S +  H+   VLR+K G+ I +FNG  GE+ + I  + KS    
Sbjct: 4   RFYHPEEITPGKIIELSAENKHHATRVLRLKNGNPITIFNGLGGEFSAHIEAISKSSATV 63

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           +   Y    +     ++   +     ++D++IQKSVE+G+  I+PV T  +      + +
Sbjct: 64  LIDAYHHTDRESPLSIELAQAICINEKMDWIIQKSVELGITRIQPVFTARSIVHLSDERS 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSL 178
           +  +   +   ISA EQC    LP + P   L   L      H    V    +  + N L
Sbjct: 124 YKRLQHWKKIIISACEQCGRNCLPQVLPLIPLAEWLSQKKTSHCANDVHLMLSTRTTNGL 183

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + +   A   N+ ++IGPEGG+ +EE+  +    F+ PL LG RILR+++AA+A +A +Q
Sbjct: 184 KNISKPAADANITLVIGPEGGFTAEEETAISYSGFI-PLRLGKRILRTESAALATIAAMQ 242

Query: 239 AICGDW 244
           A+ GD+
Sbjct: 243 ALWGDY 248


>gi|164685878|ref|ZP_01945479.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165918716|ref|ZP_02218802.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|164601398|gb|EAX33970.2| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165917544|gb|EDR36148.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 244

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            ++R++    L + +        YHYL +VLR++EG  I+LFNG    +  +I+ + K  
Sbjct: 5   RIQRIYYPDQLSVDSTVTLDSRNYHYLLNVLRLREGHKIILFNGDGNNYGGRITRIQKKQ 64

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY--TQNTH 121
           +   ++ +   +T+ S  ++      ++ ++DY IQK+VE+G+  I P+IT    T+   
Sbjct: 65  VEITIDSKEAGRTESSLFIELGQGIFRSEKMDYAIQKAVELGVNRIVPLITERTSTKPKT 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +   +   IS  EQ     +P +    +L   L        +V        +NSL   
Sbjct: 125 QKLAHWQGVLISGCEQSGRCCIPELMQAQSLSDWLSQKREGLSLVCHPNA---QNSLADF 181

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +    + +LIGPEGG   +E +      F   L LGPRILR++TA V A++L+QA  
Sbjct: 182 KTTS--QRITLLIGPEGGLSDDEVQRATQSGF-QVLFLGPRILRTETATVTALSLIQAYF 238

Query: 242 GD 243
           GD
Sbjct: 239 GD 240


>gi|254464533|ref|ZP_05077944.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
           Y4I]
 gi|206685441|gb|EDZ45923.1| conserved hypothetical protein TIGR00046 [Rhodobacterales bacterium
           Y4I]
          Length = 221

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83
             DQ HYL  V+R+  G  + LFNGKDGEWL++++  GK       + Q++      D+ 
Sbjct: 2   DRDQAHYLFGVMRLAAGAAVALFNGKDGEWLAEVAEAGKRGGTLVCQEQTKPLQLPPDLW 61

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            +F+PIK  R D++++K+ EMG   I PV T +T +     DR++ + + AAEQC    +
Sbjct: 62  LLFAPIKKARTDFIVEKAAEMGAARILPVQTEFTNSERIRQDRLQAHAVEAAEQCGGTYV 121

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +     L  LL  W    Q++F DE     N+L+           AILIGPEGG+   
Sbjct: 122 PEVADSQKLSRLLDQWPRERQLMFCDEAEVG-NALQLAAETQKDVPWAILIGPEGGFSEA 180

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E++ LH+LP    +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 181 ERKRLHALPQSHVVSLGPRILRADTAAVAAMTLWQQALGDW 221


>gi|90409107|ref|ZP_01217229.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3]
 gi|90309781|gb|EAS37944.1| hypothetical protein PCNPT3_05034 [Psychromonas sp. CNPT3]
          Length = 275

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 19/251 (7%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+      R +      +  + + + +   ++ HVLR+KEG NI+LFNG  G++ + +  
Sbjct: 34  MRY----PRFYDPQSFSLHNEFELADNVAQHI-HVLRLKEGLNIILFNGLGGQFTATLIN 88

Query: 61  VGK-SIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           V K S   K+   +++  +    +       +  R++++IQKSVE+G+  I P+++    
Sbjct: 89  VKKRSCTVKITAFTQTDNESPLHLHLGQVISRGERMEFIIQKSVELGVNEITPLLSERCG 148

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                +       + +   I+A EQ     +P ++PP  ++          Q+       
Sbjct: 149 VKVNVERMAKKHQQWQKIAIAACEQSGRNIVPIVHPPQQMQQWCTQSTDALQLTLHPRAL 208

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S  +L       +I N+ +LIGPEGG    E     +L F   L LGPR+LR++TA + 
Sbjct: 209 LSIKTLPD-----NISNIRLLIGPEGGLSDGEINLTKTLNFTETL-LGPRVLRTETATLT 262

Query: 233 AMALVQAICGD 243
           A++ +Q   GD
Sbjct: 263 AISALQFRFGD 273


>gi|239627767|ref|ZP_04670798.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517913|gb|EEQ57779.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 249

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   FV     +    + +G   +++ + LRMK G+ +L+ +G   ++   +S +     
Sbjct: 1   MHHFFVAPAQVMGDCIRITGPDVNHMKNALRMKPGEEVLISDGTGTDYRCALSSLDSDCV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR------YTQ 118
               V      +   S +       K+++++ +IQK+VE+G   I PV T+        +
Sbjct: 61  EARIVSVDRDGRELPSRIWLFQGLPKSDKMELIIQKAVELGAACIVPVSTKNAVVKLDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175
                  R +    SAA+Q     +P +    TL      ++      +++  +   G E
Sbjct: 121 KEEAKRKRWQAIAESAAKQSGRSLMPEVMGLMTLGQAFDYIEKEQFALRLIPYEHEAGME 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            S ++L  +    ++A+ IGPEGG+   E         V P+SLG RILR++TA +A ++
Sbjct: 181 GSRQELSRVGPGQDIAVFIGPEGGFDEAEINLALKKG-VRPVSLGKRILRTETAGLAMLS 239

Query: 236 LVQAIC 241
           ++    
Sbjct: 240 VLMMRL 245


>gi|260556741|ref|ZP_05828959.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260410000|gb|EEX03300.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 240

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + D    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPASKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|89056403|ref|YP_511854.1| 16S ribosomal RNA methyltransferase RsmE [Jannaschia sp. CCS1]
 gi|88865952|gb|ABD56829.1| protein of unknown function DUF558 [Jannaschia sp. CCS1]
          Length = 245

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/237 (39%), Positives = 133/237 (56%), Gaps = 1/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLFVD PL        S D  +YL +V+R+  G  + LFNG DGEW ++++  GK     
Sbjct: 8   RLFVDHPLGEAQSVPVSRDHANYLFNVMRLDAGAGVALFNGTDGEWRAEVAAKGKRGGVL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             + Q+  Q    D+  +F+PIK  R D++++K+ E+G+  + PV T  T       D++
Sbjct: 68  VCKEQTAPQVMPPDMWLLFAPIKKARTDFIVEKAAELGVARVCPVRTERTNAERIRQDKL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +    +LE +L  WD    +VFADE     +S       A  
Sbjct: 128 QAHAMEAAEQCGGTYVPPVEDIRSLEKVLDGWDDRRALVFADEAEAGRSSSLAAVLAAAP 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  AILIGPEGG+   E+  L ++P V  LSLGPRILR+DTAAVAA+ L Q   GDW
Sbjct: 188 PPAAILIGPEGGFSDAERARLRAMPNVHVLSLGPRILRADTAAVAALTLWQEHVGDW 244


>gi|306841708|ref|ZP_07474395.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306288238|gb|EFM59622.1| conserved hypothetical protein [Brucella sp. BO2]
          Length = 242

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/249 (42%), Positives = 145/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYLAHVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELQAGVSFDAGAQAAHYLAHVLRMKEGDEVLVFNGRDGEWRASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      D
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGILQPVITQHTQVPRLGTD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L LP        +     WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLALPDCREALRFDRFRDQWDTSRRLIFCDEGHESDDPLSILAGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|222084972|ref|YP_002543501.1| hypothetical protein Arad_1026 [Agrobacterium radiobacter K84]
 gi|221722420|gb|ACM25576.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 145/226 (64%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFV   +      +A  +Q++YLA+VLRM++G  +L+FNG+DGEW ++IS+
Sbjct: 1   MRANFRMQRLFVVSDIKANAGIEADQEQFNYLANVLRMEDGAELLIFNGRDGEWKARISF 60

Query: 61  VG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      ++R Q   SD+ Y+F+P+K  RLDY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PSRKRILMTPIEETRPQPAPSDLHYLFAPLKVGRLDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N+D+VR   I AAEQC IL +P +  P  L  LL+ W    +I++ DE    +N L 
Sbjct: 121 KITNLDKVRANVIEAAEQCGILGIPDVAEPVKLADLLERWPRERRIIYCDEGDAGQNPLP 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L  I    ++A+L+GPEGG+  EE+  L SL FVT + LGPRILR
Sbjct: 181 LLAKITE-KHLALLVGPEGGFSEEERALLRSLDFVTAIPLGPRILR 225


>gi|294010080|ref|YP_003543540.1| hypothetical protein SJA_C1-00940 [Sphingobium japonicum UT26S]
 gi|292673410|dbj|BAI94928.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 253

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 4/238 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RL V+  L         G+  HYL  V+R+K  D +LLF+G+ GEW +K   + K  + 
Sbjct: 18  PRLHVETQLGEGVSVPVDGNPAHYLISVMRVKADDIVLLFDGRSGEWAAKARDIRKRDLV 77

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  ++R      D     +PI+  R+D + +K+ E+G+  ++PV+TR       N+DR
Sbjct: 78  LEVVSRTRPPEDVPDFWLCCAPIRKGRIDLVAEKACELGVARLQPVLTRRAVVDKLNLDR 137

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +  + + AAEQC    LP +     L+ LL++W     + FADE+ G E   + L A  H
Sbjct: 138 LYAHLVEAAEQCGRTALPELGQMAKLDALLRDWPEGRWLFFADES-GGEPLADTLKA--H 194

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               A LIGPEGG+   E+E +  +    P+SLGPRILR++TAA+AA +    I GDW
Sbjct: 195 PGPAAFLIGPEGGFDPAEREAIRRVAKAIPVSLGPRILRAETAAIAATSAWMTINGDW 252


>gi|323527358|ref|YP_004229511.1| hypothetical protein BC1001_3037 [Burkholderia sp. CCGE1001]
 gi|323384360|gb|ADX56451.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV  PL      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  + +   
Sbjct: 1   MPRFFVGTPLSPDDIVQLPDDVVRHVL-VLRLQTGDSIVLFNGEGGEYSAELVAIERRAV 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R         +         +++D++I+K+VE+G  +  P+ T  +      +
Sbjct: 60  TVKIREFRDIEVEPPYRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCG 173
                         ++ EQC    LP + P   +   L            +I+ +     
Sbjct: 120 RALRRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRVPAGDELRILLSPRASI 179

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  L A      V +L+GPEGG+ + E+       F   + LGPR+LR++TA +A 
Sbjct: 180 H---FSALPASPPKGPVTVLVGPEGGFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGIAV 235

Query: 234 MALVQAICGDW 244
           ++ + A  G W
Sbjct: 236 LSALAATWGGW 246


>gi|94501841|ref|ZP_01308353.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65]
 gi|94426062|gb|EAT11058.1| hypothetical protein RED65_14462 [Oceanobacter sp. RED65]
          Length = 241

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 17/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW-LSKISYVG-K 63
            + R++   PL             H++  VLRM+ G  + +FNG    +  + I +   K
Sbjct: 2   RIPRIYTPQPLGEHNLIDLDDASAHHVGKVLRMEAGRQLKVFNGSGHRYFDATIVHADRK 61

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            ++ ++ E  + S      +       K +++++ IQK+VE+G+  I P+ + +      
Sbjct: 62  KVQVRLGESHASSTESPLSIHLGQVMSKGDKMEFTIQKAVELGVTDITPLWSEHCDVKLN 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +       +     ISA EQ     +P ++P   +E  L N + + + +        + 
Sbjct: 122 QERLEKKHKQWLGIIISACEQSGRDVIPHLHPTIKIEDWLANMETDVKWLL-------DP 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L +     +VAI +GPEGG+   E +      F + L +GPR+LR++TAA+ A+ +
Sbjct: 175 GAEPLQSKVAPKSVAIAVGPEGGFSEGEVKLAQQQGFQSQL-IGPRVLRTETAALTAITI 233

Query: 237 VQAICGDW 244
           +Q+  GD+
Sbjct: 234 LQSRWGDF 241


>gi|329888452|ref|ZP_08267050.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328847008|gb|EGF96570.1| RNA methyltransferase, RsmE family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 133/239 (55%), Gaps = 3/239 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + RL V   L        + DQ  YL  V+R+K GD +L+FNG+DGEW   ++ V  K +
Sbjct: 1   MIRLHVQGDLAPGAVVAPTLDQSRYLTQVMRLKAGDELLVFNGRDGEWRVSVAEVLKKGV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             + E Q R Q    D++ I + +K  R++ +++K+ E+G   +R  +T  T      +D
Sbjct: 61  ILRAEEQMRPQVYGPDLELIVAVVKKARVETIVEKAAELGAKRVRLALTHRTNADRLRLD 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+      AAEQ   L +P +  P  L+ LL  W+   +++F DET G+          A
Sbjct: 121 RLDAIAEEAAEQTGRLDVPVVDDPVKLDALLDGWEAGRRLMFCDETGGA--PAASALTQA 178

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                AILIGPEGG+  EE E L SLPF T +SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 179 GDGKWAILIGPEGGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 237


>gi|299769311|ref|YP_003731337.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp.
           DR1]
 gi|298699399|gb|ADI89964.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter sp.
           DR1]
          Length = 240

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ +S + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTLENFNPNNRNAPFKAVLGQVMSKGDRMDYAIQKATELGVSKIQLLTSDRCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + +    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLNEWLSSSELPQSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|209886372|ref|YP_002290229.1| hypothetical protein OCAR_7260 [Oligotropha carboxidovorans OM5]
 gi|209874568|gb|ACI94364.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 246

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 131/221 (59%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RLFVD PL    +   + +Q HYL +VLR+   D +L+FNG+DGEW ++I+   +  + 
Sbjct: 9   PRLFVDAPLGAGREVALAREQGHYLGNVLRLSASDTVLVFNGRDGEWRAQITGRKRLEQL 68

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q+R Q    D+  +F+P+K  RLDYM+QK+VEMG   + P +T++TQ +  N++R+
Sbjct: 69  TPLEQTRPQDPPCDLHLLFAPLKHARLDYMVQKAVEMGASRLTPTLTQFTQVSRINLERM 128

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC IL LP I  P  L   L   D    +VF DE     + L  L   A+ 
Sbjct: 129 RANAIEAAEQCGILNLPEIDEPLPLTGRLAERDGKRLLVFCDEAAPQASPLAALKEAAND 188

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             + +LIGPEGG+  +E+  L + P +  LSLGPRILR+DT
Sbjct: 189 GGLDVLIGPEGGFSEDERAALLAQPRLVRLSLGPRILRADT 229


>gi|317405816|gb|EFV86104.1| hypothetical protein HMPREF0005_02771 [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D PL    +        H+   VLR++ G+ ++LFNG+ GE+ + +   GK+   
Sbjct: 4   PRFFCDAPLSAGARIALPEALAHHAIRVLRLRAGEPMVLFNGQGGEYPAVLEIEGKAGFA 63

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
           ++  +  R       +  +      +++D++++K+VE+G   + P+  + +         
Sbjct: 64  QLGAFDPREAELAGRITLVQGLPAGDKMDWVVEKAVELGAAHVCPIAAQRSVLQLAGPRL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +   +    SAAEQC    L  +  P  L   L       +++   +     +   +
Sbjct: 124 EKRVAHWQRIAQSAAEQCGRNRLMAVDAPMALADWLAQPADGLRLLCHPDADA--DLAGR 181

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A   + ++ +L+GPEGG+  +E         V  +  GPR+LR++TA +A ++   A+
Sbjct: 182 LGATPGLQSLTLLVGPEGGWSDKELALAREAG-VQAVRFGPRVLRTETAGLALISAAGAL 240

Query: 241 CG 242
            G
Sbjct: 241 LG 242


>gi|134094087|ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas
           arsenicoxydans]
 gi|133737990|emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 241

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +    L I           H++  V+R+  GD I LFNG+ GE+ + IS + K   
Sbjct: 1   MPRFYCPQALVIGAVVTLPEHVAHHI-QVIRLSAGDAITLFNGEGGEYTATISTIEKKRV 59

Query: 67  FKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                  + R       +    +  + +++D++I+K+VE+G  A++P+ ++        +
Sbjct: 60  TAEIKIFEPREVELPYAITLAQALPEASKMDWIIEKAVELGAHALQPLASQRCVVRLSAE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                M   +   I+A+EQ     L  +  P          D + +I+ +      E SL
Sbjct: 120 RAAKKMQHWQGIIIAASEQSGRNRLTTLAEPADFNQWATQQDLHVRIMLSPRA---EQSL 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     +VA++IGPEGG+  +E+    +      LS+GPR+LR++TA +AA+A + 
Sbjct: 177 SDWARHHPPQSVALMIGPEGGFTEKEETQAIANG-ALMLSMGPRVLRTETAGMAAIAALN 235

Query: 239 AICG 242
           A+ G
Sbjct: 236 AVWG 239


>gi|295677690|ref|YP_003606214.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002]
 gi|295437533|gb|ADG16703.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1002]
          Length = 246

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FVD  L          D   ++A VLR++ GD+++LFNG+ GE+ +++  V + S 
Sbjct: 1   MPRFFVDALLYPDDVIALPDDVVRHVA-VLRLQPGDSLVLFNGRGGEYGAELVEVERRSA 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R K+ E+++        +         +++D++I+K+VE+G     P+ T  +      +
Sbjct: 60  RVKIGEFRAVEVEPPYRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATARSVVRLTGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCG 173
                    +    ++ EQC    LP + P   +   L     +      +++ +     
Sbjct: 120 RAQRRQQHWQGVVRASCEQCGRNRLPDVTPVGEIGPWLDTLSREPAPDELRLLLSPRASI 179

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  L        V +LIGPEGG  ++E+       F T + LGPR+LR++TA +A 
Sbjct: 180 G---FAALPDAPPPGGVTLLIGPEGGLSADEEAAAVEQGF-TAVGLGPRVLRTETAGIAV 235

Query: 234 MALVQAICGDW 244
           +A + A  G W
Sbjct: 236 LAALAARWGGW 246


>gi|297584653|ref|YP_003700433.1| hypothetical protein Bsel_2365 [Bacillus selenitireducens MLS10]
 gi|297143110|gb|ADH99867.1| protein of unknown function DUF558 [Bacillus selenitireducens
           MLS10]
          Length = 250

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 109/245 (44%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64
           ++R FV+     +     +GD  H+++ V+RM +GD I+    +G  G    + +  G+ 
Sbjct: 1   MQRYFVEADQMKEDLFILTGDDAHHISKVMRMTDGDRIICCMPDGSCGTATIQSTAEGRV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 +   +     +V       K ++L+ +IQK+ E+G+ ++ PV    +      +
Sbjct: 61  HAELETWLKETSEMPVEVTLAQGLPKGDKLELIIQKATELGVSSVIPVQMSRSIAKIDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R R     AAEQ     +P I  P +   +    +    ++ A E  G   + 
Sbjct: 121 KAGKKVVRWRKIAKEAAEQAHRNRVPCISEPVSFTRVQGLVEEYDLVIAAYEEEGKAGNH 180

Query: 179 EK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L+ +     + ++IGPEGG+  EE E L     V  +S+GPRILR++TA +  +
Sbjct: 181 HALPVLLNGLLPGQRILVIIGPEGGFSPEEIEKLERAG-VRSVSIGPRILRTETAPLYVL 239

Query: 235 ALVQA 239
           A V  
Sbjct: 240 AAVSY 244


>gi|220932114|ref|YP_002509022.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H
           168]
 gi|219993424|gb|ACL70027.1| conserved hypothetical protein TIGR00046 [Halothermothrix orenii H
           168]
          Length = 249

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 121/247 (48%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R FV             G+ Y+++ + LR+  GD +++  G   ++++ I  + ++ I
Sbjct: 1   MHRFFVSEEQIRDDLVIIKGNDYNHIVNSLRLNPGDKLIVCPGNCRDYVATIEEIKENQI 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+  + +++ + S ++    +  K  ++D +IQK+ E+G+ +I P+ T  T      +
Sbjct: 61  TGKIIKEYKNRNEPSLNITLAQALPKKRKMDLVIQKATEIGVRSIIPLKTTRTIVRLNKK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 DR +     AA+Q     +P +    +L+ L +   +   I+   E    +N  
Sbjct: 121 KERKKTDRWQKIAKEAAKQSGRGRIPTVERVYSLKELTQFKSNFDLIIIPWEEEQGKNLK 180

Query: 179 EKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             L    ++ I  + ++IGPEGG+  EE + +  L  + P++LGPRILR++TA +  + +
Sbjct: 181 NVLSTVNVSEISKILVIIGPEGGFPPEEIKFIEQLGGI-PITLGPRILRTETAGLVVLTM 239

Query: 237 VQAICGD 243
           +    GD
Sbjct: 240 LLYESGD 246


>gi|240114827|ref|ZP_04728889.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260441357|ref|ZP_05795173.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
           DGI2]
 gi|268600483|ref|ZP_06134650.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291044717|ref|ZP_06570426.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268584614|gb|EEZ49290.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291011611|gb|EFE03607.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 241

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      N +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSENTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+  
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAITA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|254503148|ref|ZP_05115299.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii
           DFL-11]
 gi|222439219|gb|EEE45898.1| conserved hypothetical protein TIGR00046 [Labrenzia alexandrii
           DFL-11]
          Length = 264

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/230 (41%), Positives = 147/230 (63%), Gaps = 6/230 (2%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           K    ++RLF+   L    + +A   Q +YL +VLR+K+GD +L+FNG DGEWL+KI   
Sbjct: 15  KYEFKMQRLFLRHILADGARIEADRGQANYLLNVLRLKDGDYVLVFNGSDGEWLAKIQSS 74

Query: 62  GKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G+     ++  ++R QT  +D+ Y+F+P+K  RLDYM+QK+VEMG G++ PV+T++TQ++
Sbjct: 75  GRRACSLQLMERTRDQTAPNDLIYMFAPLKHARLDYMVQKAVEMGAGSLMPVMTQHTQSS 134

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCGSENS 177
             N++R+    I AAEQC +L++P +  P +L+ +L  W       +++F DE   + N 
Sbjct: 135 RVNVERMEANVIEAAEQCGVLSVPTVLSPMSLKDVLTAWPEAHAGRKLLFCDEGEETNNP 194

Query: 178 LEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           L  L  +     P +AILIGPEGG+  +E+  L  L FVTP+ LGPRILR
Sbjct: 195 LLTLVQLKENGPPPLAILIGPEGGFSKDERGLLKDLDFVTPIPLGPRILR 244


>gi|160895341|ref|ZP_02076112.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50]
 gi|156863034|gb|EDO56465.1| hypothetical protein CLOL250_02900 [Clostridium sp. L2-50]
          Length = 248

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--K 63
           + R FVDF   +       +G+  +++ +VLR+K  D I++ +G+  ++  +IS +   K
Sbjct: 1   MNRFFVDFDGRVFDKSIDITGEDVNHIKNVLRLKVNDEIIISDGRGRDYRCQISVMDHEK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +   ++        ++++       K ++++++IQK+VE+G+  I PV+T+ T      
Sbjct: 61  VVADILDVCDNFAELETEITLFQGFPKADKMEWIIQKTVELGVTRIVPVMTKRTVVKLDA 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
           +      +R +   ++AA+Q     +P +  P T +  L      +  ++  +E  G   
Sbjct: 121 KKAGKKTERYQAIALAAAKQSGRGVIPEVTAPVTWKEALAMAKELDMNMIPYEEAEGVAY 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S E   +I    ++ I IGPEGG+  EE      +     ++LG RILR++TA +A M++
Sbjct: 181 SKEVFASIKGKKSLGIFIGPEGGFAGEEVVAATDMG-AKMVTLGHRILRTETAGMAVMSI 239

Query: 237 VQAIC 241
           +    
Sbjct: 240 IMFEL 244


>gi|193077877|gb|ABO12758.2| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978]
          Length = 240

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + D    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|237747297|ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378648|gb|EEO28739.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 243

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 15/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RLF DFPL +        D   ++  V+R+  G+ I LFNG+ GE+ ++I   G++ R
Sbjct: 1   MTRLFCDFPLAVGACLDLPKDTARHIM-VVRLSRGEAITLFNGQGGEYRARILETGRN-R 58

Query: 67  FKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            + E  S S        ++  +    +  ++D++I+K+ E+G+  I P+ T+ +      
Sbjct: 59  VRAEIVSFSPHEVELPYEISLVQGIPEAGKMDWIIEKAAELGVHRIVPLATQRSVVRVNA 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + R ++  +SA+EQC    L  I  P   +  L+N     +I+F+       +S
Sbjct: 119 DRIEKRLARWQSIVVSASEQCGRNRLLAIGQPVNFDAYLQNSPEPSKIMFSPRAS---HS 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L           +++LIGPEGG+ +EE+E       VT LS+GPRILR++TA +AA++ +
Sbjct: 176 LASWATGQKPHAISLLIGPEGGFSAEEEELARQKG-VTFLSMGPRILRTETAGLAAVSAI 234

Query: 238 QAIC 241
            AI 
Sbjct: 235 NAIW 238


>gi|254496687|ref|ZP_05109550.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254354115|gb|EET12787.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 242

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++             S +   ++A VLRM+ G+ + LF G + E+ + I  V K     
Sbjct: 5   RIYQPGSYQSNELLALSPEASQHVAVVLRMQIGEQLTLFCGDNREFTATIEAVKKKQVMV 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 + ++     +    +  K  R++ ++QK+VE+G+  I P+I+         +  
Sbjct: 65  TVNAVTAINKESPLAIHLAQAISKGERMELVMQKAVELGVTRITPIISERCVVKLDQERM 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + + +   I+A EQ    T+P I+PP TL   L+      +++      G++N  + 
Sbjct: 125 GKKLHQWQAIVIAACEQSGRNTVPVIHPPLTLARYLQEESAQLKLILHP--GGNKNWRDY 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               +   N+A+LIGPEGG    E  +  +  F  PLSLGPRILR++TAA+ A++++QA+
Sbjct: 183 TFTQS---NIALLIGPEGGLSDAEVHSASAQGF-QPLSLGPRILRTETAAITALSVLQAV 238

Query: 241 CGD 243
            GD
Sbjct: 239 AGD 241


>gi|169632941|ref|YP_001706677.1| hypothetical protein ABSDF1185 [Acinetobacter baumannii SDF]
 gi|169151733|emb|CAP00535.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 240

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +  +LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQAILFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPVDRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + D    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPVSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|220920410|ref|YP_002495711.1| hypothetical protein Mnod_0365 [Methylobacterium nodulans ORS 2060]
 gi|219945016|gb|ACL55408.1| protein of unknown function DUF558 [Methylobacterium nodulans ORS
           2060]
          Length = 267

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/243 (42%), Positives = 139/243 (57%), Gaps = 7/243 (2%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-R 66
            RLF+D P+    +      Q +YL  VLR  EGD +L+FNG+DGEW ++I   G+    
Sbjct: 9   PRLFLDLPMREGMRHSLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWRAEIQPTGRKAGD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             +  Q+R QT   ++ Y+F+P+K  RLDY+ QK+VEMG   IRPVITR TQ     +DR
Sbjct: 69  LILREQTRPQTPPGNLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC ILT+P I     L   L   +    +VF DE     + +  L     
Sbjct: 129 LRANAIEAAEQCGILTIPEIAEAAPLPAALSALEAERLLVFCDEDAPVADPIMTLRQAGA 188

Query: 187 IPN------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                    +A++IGPEGG+  EE+  +   P    LSLGPRILR+DTAAVA +ALVQA+
Sbjct: 189 GREGNGGLPLAVVIGPEGGFTPEERALILDRPNTVRLSLGPRILRADTAAVAVLALVQAV 248

Query: 241 CGD 243
            GD
Sbjct: 249 LGD 251


>gi|170740484|ref|YP_001769139.1| hypothetical protein M446_2244 [Methylobacterium sp. 4-46]
 gi|168194758|gb|ACA16705.1| protein of unknown function DUF558 [Methylobacterium sp. 4-46]
          Length = 265

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 140/249 (56%), Gaps = 13/249 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-R 66
            RLF+D P+           Q +YL  VLR  EGD +L+FNG+DGEW ++I   G+    
Sbjct: 9   PRLFLDVPMAEGVVHGLDRAQANYLLGVLRRGEGDGVLVFNGRDGEWWAEIRPTGRKAGD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             +  ++R QT+  D+ Y+F+P+K  RLDY+ QK+VEMG   IRPVITR TQ     +DR
Sbjct: 69  LVLRRRTRPQTEPGDLHYLFAPLKAARLDYVAQKAVEMGASLIRPVITRRTQGDRIKLDR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   + AAEQC IL +P I     L   L   + +  +VF DE     + +  L     
Sbjct: 129 LRANAVEAAEQCGILAIPEIAEAAPLTEALAALEADRLLVFCDEDAPVRDPVAALRQGVA 188

Query: 187 IP------------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            P             +A++IGPEGG+  EE+  +   P    LSLGPRILR+DTAAVA +
Sbjct: 189 RPPAGAGRGGNVPLPLAVVIGPEGGFTPEERALILERPTTIRLSLGPRILRADTAAVAVL 248

Query: 235 ALVQAICGD 243
           ALVQA+ GD
Sbjct: 249 ALVQAVLGD 257


>gi|240015737|ref|ZP_04722277.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA6140]
          Length = 241

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      N +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSENTRLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|291615399|ref|YP_003525556.1| hypothetical protein Slit_2944 [Sideroxydans lithotrophicus ES-1]
 gi|291585511|gb|ADE13169.1| protein of unknown function DUF558 [Sideroxydans lithotrophicus
           ES-1]
          Length = 245

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 12/245 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R +   PL + T  +   +  H+ + VLR++ GD + +F+G      + I+ +      
Sbjct: 4   PRFYCPPPLPLATNFELPPEAAHHASRVLRLRVGDAVQIFDGLGNALDATINAINGKHVL 63

Query: 68  KVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
               Q+    Q     +    +   + ++D+++QK+ E+G   I PV T  +        
Sbjct: 64  LGNLQTFMGQQESGLHIALAQAMCTSEKMDWVVQKATELGAAEIIPVQTLRSVARLSSPR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +  R   +SA EQC   TLP +  P  L   L++  H     F     G+ N   
Sbjct: 124 AEKRAEHWRNVAVSACEQCGRNTLPQLQTPQELGTWLEDVRHTAGGKFILLPGGAINL-- 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                       +LIGPEGG+ ++E        F+ P+ LGPR+LR++TAA+A +A +Q 
Sbjct: 182 -QSQPRPQGRATLLIGPEGGFTADEANIAQQAGFI-PILLGPRVLRTETAALAGIAALQT 239

Query: 240 ICGDW 244
           + GD+
Sbjct: 240 LWGDF 244


>gi|260549771|ref|ZP_05823988.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260407288|gb|EEX00764.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 240

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIESFNPANRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + +    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLNEWLSSSELPVSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLSGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|23099420|ref|NP_692886.1| hypothetical protein OB1965 [Oceanobacillus iheyensis HTE831]
 gi|22777649|dbj|BAC13921.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 255

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 15/249 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++R FV      +   +  GD  H++  V+R + G+ ++  +      L+ I  +    +
Sbjct: 1   MQRYFVSQENVTENSIRIIGDDVHHIQRVMRAQVGEKLICVSDNGRAALTYIIKLSDDYV 60

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
             ++E +   S      V       K ++ D ++QK  E+G  A  P     +       
Sbjct: 61  DVEIEKWLEESNELPVSVTIAQGIPKGDKFDLILQKGTELGADAFIPFQAERSVALWNDE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG---- 173
           +  H  + R +     A+EQ     +P ++    L+ +L         +FA E       
Sbjct: 121 KKYHKKVKRFQKILKEASEQSHRNRIPSLHSVMNLKQILDEASAYTVKLFAYEEEAKTEK 180

Query: 174 -SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S N +  L  I     + + IGPEGG+  +E + L    F+ P+ LG RILR++TAA+ 
Sbjct: 181 MSSNLVNTLQNILSHDKIILCIGPEGGFSIKEADQLRENGFI-PIRLGKRILRTETAALY 239

Query: 233 AMALVQAIC 241
           A++ +    
Sbjct: 240 ALSSISYQL 248


>gi|262376600|ref|ZP_06069828.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308310|gb|EEY89445.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R ++D  L I    + +   +H+   VLR + G++  LFNG+ GE+   ++ V K   
Sbjct: 1   MPRFYIDADLTIDVSLELTETVFHHWVKVLRAQVGESATLFNGQGGEYDVTLTEVAKKSA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                 +   ++T +          K +R+DY IQK+VE+G+  I+ + + + +      
Sbjct: 61  TVSVNAFNPANRTPKFQALLGQVMSKGDRMDYAIQKAVELGVSEIQLLTSDHCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +D  +   I+A EQC +  +P I  P +LE  L     N ++V A     ++   
Sbjct: 121 RDQKKLDHWQGIAIAACEQCGLNIVPEILAPMSLEKWLNTELPNTKLVLAPNKDETDVLA 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +         ++A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++ 
Sbjct: 181 DATL------DLALLIGPEGGLSEAEISAANQKGFLN-WCIGERVLRTETAPVVALSILN 233

Query: 239 AIC 241
            + 
Sbjct: 234 YVL 236


>gi|59802454|ref|YP_209166.1| hypothetical protein NGO2160 [Neisseria gonorrhoeae FA 1090]
 gi|240079873|ref|ZP_04724416.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240127370|ref|ZP_04740031.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268596016|ref|ZP_06130183.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268685742|ref|ZP_06152604.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293397817|ref|ZP_06642023.1| ribosomal RNA small subunit methyltransferase E [Neisseria
           gonorrhoeae F62]
 gi|59719349|gb|AAW90754.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268549804|gb|EEZ44823.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268626026|gb|EEZ58426.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291611763|gb|EFF40832.1| ribosomal RNA small subunit methyltransferase E [Neisseria
           gonorrhoeae F62]
          Length = 241

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      N +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSENTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|110803459|ref|YP_699307.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium perfringens
           SM101]
 gi|110683960|gb|ABG87330.1| RNA methyltransferase, RsmE family [Clostridium perfringens SM101]
          Length = 250

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F    +   T  K +G+   ++  VLR+K G+ +++ N +  E+L ++  V K  +
Sbjct: 1   MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             K+ E    +     ++       K  ++D ++QK VE+G+  I P IT       +  
Sbjct: 61  SIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVLEIIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+    + A +Q     +P +  P   + +L+  D    +V   E          
Sbjct: 121 FKKLDRLNKIALEACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAM 180

Query: 181 LHAIAH---IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +++I +   I NV I++GPEGG+   E E L        ++LGPRILR++TA    ++L+
Sbjct: 181 VNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKG-AHIVTLGPRILRTETAGFTCISLI 239

Query: 238 QAICGD 243
           Q   GD
Sbjct: 240 QYELGD 245


>gi|293609672|ref|ZP_06691974.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828124|gb|EFF86487.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + +    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|261493725|ref|ZP_05990243.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494547|ref|ZP_05991031.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309796|gb|EEY11015.1| hypothetical protein COI_0333 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310615|gb|EEY11800.1| hypothetical protein COK_2126 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 225

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 13/228 (5%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83
            S D  +++  VLRMK+G+ I+LF+G +  + + +  V K         S    ++S++ 
Sbjct: 2   LSEDAANHVGRVLRMKQGEQIILFDGSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLP 61

Query: 84  YIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAA 135
                +  + +R+++ IQKSVE+G+  I P+ +         +     + + +   I+A 
Sbjct: 62  IHLGQVISRGDRMEFTIQKSVELGVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAAC 121

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQC    +P I P   L    K  D   ++        +   L  +        V +LIG
Sbjct: 122 EQCGRNEIPEIRPIMKLTDWCKEQDDMLKLNLHPRAKYTIRELPNV----PKAGVRLLIG 177

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            EGG  +EE     S  F T + LG R+LR++TA++AA+  +Q   GD
Sbjct: 178 SEGGLSAEEIAMTESEGF-TEVLLGKRVLRTETASLAAITALQVCFGD 224


>gi|328545108|ref|YP_004305217.1| hypothetical protein SL003B_3491 [polymorphum gilvum SL003B-26A1]
 gi|326414850|gb|ADZ71913.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1]
          Length = 252

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 98/233 (42%), Positives = 149/233 (63%), Gaps = 6/233 (2%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +     +RLF+   L    Q +A   Q +YL +VLR+ + D +L+FNG+DGEWL++I+  
Sbjct: 3   RYDFRTQRLFLRHGLADGGQVEADRAQANYLLNVLRLADDDRVLVFNGRDGEWLAEIAAA 62

Query: 62  G-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G K+   ++  ++R QT Q D+ Y+F+P+K  RLDYM+QK+VEMG GA+RPV+TR+T  +
Sbjct: 63  GRKACTLRLVERTRPQTPQPDLHYLFAPLKHARLDYMVQKAVEMGAGALRPVMTRHTHAS 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETCGSENS 177
             N++R+    + AAEQC +++LP +  P  L+ +L  W   D   +++F DE   S + 
Sbjct: 123 RINLERMEANVVEAAEQCGVISLPDVRAPAALDAVLAAWPQADAGRRLLFCDEGEESHSP 182

Query: 178 LEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L  L  +A      +A+L+GPEGG+  EE+  L  LPFV P+ LGPRILR+DT
Sbjct: 183 LPVLARLAGEGPSPLALLVGPEGGFSKEERALLRGLPFVVPIPLGPRILRADT 235


>gi|240013291|ref|ZP_04720204.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240120363|ref|ZP_04733325.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 241

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|325122892|gb|ADY82415.1| hypothetical protein BDGL_001829 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ +S + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLSEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPANRDAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + +    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLSSSELPQSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|325204878|gb|ADZ00332.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           M01-240355]
          Length = 241

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLADIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|90419943|ref|ZP_01227852.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335984|gb|EAS49732.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 280

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 91/219 (41%), Positives = 139/219 (63%), Gaps = 2/219 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIR 66
            RL++D  L  +T   A+  Q +YL +V+R+ EG  +L FNG+DGEW  ++     K + 
Sbjct: 41  PRLYLDTDLVAETPVPATPVQANYLLNVMRLGEGAQVLAFNGRDGEWRCELVKAAKKKLD 100

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                + R QT  +D+ Y+F+P+K  RLDYM+QK+VEMG G ++PV+T++ Q T  N +R
Sbjct: 101 LVPRERVRDQTPPADLHYLFAPLKHARLDYMVQKAVEMGAGVLQPVMTQHVQATRLNTER 160

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC IL++P    P     LL  WD   +++F DE   + + ++ L A+  
Sbjct: 161 MRANAIEAAEQCGILSIPECREPVKFNDLLDRWDSGRRLIFCDERADAASPIDTLRALPE 220

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            P+ A++IGPEGG+ ++E+E L++  FVT +SLGPRILR
Sbjct: 221 GPH-ALVIGPEGGFSADERERLNAADFVTAISLGPRILR 258


>gi|169795277|ref|YP_001713070.1| hypothetical protein ABAYE1140 [Acinetobacter baumannii AYE]
 gi|184158858|ref|YP_001847197.1| hypothetical protein ACICU_02538 [Acinetobacter baumannii ACICU]
 gi|213158057|ref|YP_002320108.1| hypothetical protein AB57_2769 [Acinetobacter baumannii AB0057]
 gi|215482810|ref|YP_002325013.1| RNA methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301346012|ref|ZP_07226753.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
           baumannii AB056]
 gi|301510423|ref|ZP_07235660.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
           baumannii AB058]
 gi|301595608|ref|ZP_07240616.1| ribosomal RNA small subunit methyltransferase E [Acinetobacter
           baumannii AB059]
 gi|332850384|ref|ZP_08432704.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013150]
 gi|332871823|ref|ZP_08440246.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013113]
 gi|169148204|emb|CAM86067.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183210452|gb|ACC57850.1| uncharacterized protein conserved in bacteria [Acinetobacter
           baumannii ACICU]
 gi|213057217|gb|ACJ42119.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|213988086|gb|ACJ58385.1| RNA methyltransferase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730655|gb|EGJ61966.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013150]
 gi|332731152|gb|EGJ62452.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013113]
          Length = 240

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPVNRNAPFKALLGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P  L   L + D    + V A E       
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPIALHEWLNSSDLPVSKFVLAPEKEQK--- 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G RILR++TA V A++++
Sbjct: 178 -DVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRILRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|239998111|ref|ZP_04718035.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240112081|ref|ZP_04726571.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240124855|ref|ZP_04737741.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492891|ref|ZP_05106062.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268593962|ref|ZP_06128129.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598139|ref|ZP_06132306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268683436|ref|ZP_06150298.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|226511931|gb|EEH61276.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547351|gb|EEZ42769.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268582270|gb|EEZ46946.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268623720|gb|EEZ56120.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|317165554|gb|ADV09095.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 241

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|332875286|ref|ZP_08443118.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6014059]
 gi|323518770|gb|ADX93151.1| hypothetical protein ABTW07_2727 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736543|gb|EGJ67538.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6014059]
          Length = 240

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L + +  + +   +H+   VLR +  +   LFNG+ GE+L  ++ + K   
Sbjct: 1   MNRFFIETELTVGSTIQLTESVFHHWVRVLRAQLQEQATLFNGQGGEYLVTLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L + D    + V A E    +  
Sbjct: 121 RDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPTSKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|209966873|ref|YP_002299788.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum centenum
           SW]
 gi|209960339|gb|ACJ00976.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 260

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 135/237 (56%), Gaps = 2/237 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLFVD PL         G + HYL  VLRM+ G+ +L FNG+DGEWL++++ +GKS    
Sbjct: 8   RLFVDAPLSEGAAVPLEGGRAHYLRTVLRMQPGERVLAFNGRDGEWLAEVAQLGKSGGTL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               + R QT +     +F+P+K  R D + +K+ E+G   + PV TR T     N++R+
Sbjct: 68  TALRRERDQTGEEGPWLLFAPLKGGRSDSVAEKATELGAAVLHPVFTRRTDVGRVNLERL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               + AAEQC+ L++P +     L   L+ WD    +  A E+  +  ++  + A    
Sbjct: 128 AANAVEAAEQCERLSVPEVREACPLFKALEGWDPARVLFVAAESGQAMPAVSAVTAQRGR 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P   +L GPEGG+   E + L  LPFV P+ LGPR+LR+DTAA A +A+ QA+ GDW
Sbjct: 188 PAAWLL-GPEGGFDRAELDGLLHLPFVVPVGLGPRVLRADTAAFAVLAVWQALAGDW 243


>gi|146342924|ref|YP_001207972.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium sp.
           ORS278]
 gi|146195730|emb|CAL79757.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 249

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 102/237 (43%), Positives = 149/237 (62%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RLFVD PL          +Q +YL +VLR+  GD +L+FNG++GEW + I+   ++   
Sbjct: 9   PRLFVDAPLIEGGAVALDRNQSNYLGNVLRLGAGDQVLVFNGREGEWQATIAGRKRADLL 68

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            ++ + R Q +  D+ Y+F+P+K  RLDY++QK+VEMG   ++PV+TR+TQ +  N +R+
Sbjct: 69  TIQQRLRPQDQLPDITYVFAPLKHARLDYIVQKAVEMGAAVLQPVLTRHTQVSRLNGERM 128

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC IL+L  +  P  LE  L+    +  +VF DE     + ++ L   A  
Sbjct: 129 RANVIEAAEQCGILSLAEVRDPVPLERFLRERMASRLLVFCDEAAEIADPVQALRGAAAN 188

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +LIGPEGG+ +EE+E L     VT L+LGPRILR+DTA VAA+AL+QA  GDW
Sbjct: 189 AGIDLLIGPEGGFAAEERELLLRQRQVTRLALGPRILRADTAGVAALALLQATLGDW 245


>gi|325131649|gb|EGC54355.1| hypothetical protein TIGR00046 [Neisseria meningitidis M6190]
 gi|325137512|gb|EGC60095.1| hypothetical protein TIGR00046 [Neisseria meningitidis ES14902]
 gi|325141520|gb|EGC63990.1| hypothetical protein TIGR00046 [Neisseria meningitidis 961-5945]
 gi|325199017|gb|ADY94473.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           G2136]
          Length = 241

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLADIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|312110171|ref|YP_003988487.1| hypothetical protein GY4MC1_1064 [Geobacillus sp. Y4.1MC1]
 gi|311215272|gb|ADP73876.1| protein of unknown function DUF558 [Geobacillus sp. Y4.1MC1]
          Length = 249

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R FV             GD YH++ HV+RM++G  ++         L +I  +  + +
Sbjct: 1   MQRYFVPDDQVENDHLIIQGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +VE     QT+     YI     K ++L+ +IQK  E+G  +  P +   +      +
Sbjct: 61  IVRVEEWINEQTELPVQIYIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
             +  ++R +     AAEQ     +P I+ P T++ L++        +FA E    +   
Sbjct: 121 KANKKLERWKKIAKEAAEQSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNH 180

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L  + H  ++  + GPEGG+  EE E L    F +  SLGPRILR++TA +  +
Sbjct: 181 RTLAAILRQMKHGQSLLAVFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           A      
Sbjct: 240 AAASYQF 246


>gi|312795128|ref|YP_004028050.1| surface protein [Burkholderia rhizoxinica HKI 454]
 gi|312166903|emb|CBW73906.1| surface protein [Burkholderia rhizoxinica HKI 454]
          Length = 271

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 18/250 (7%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
            R FV  PL          D   ++ HVLR++ GD  +LFNG+ G++ +++  + K S  
Sbjct: 27  PRFFVPMPLHSGHSMPLPDDVVRHM-HVLRLQAGDKAILFNGEGGQFDAELLQLDKRSAT 85

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            +V  + +R       V         +++D++++K++E+G+ ++ P++T  +      + 
Sbjct: 86  VQVGRFDAREVEPPYRVVLAQGIAGGDKMDWLLEKAIELGVASVIPLVTARSVVRLTGER 145

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGS 174
                   +    +A EQC    LP + PPT +   L++      D+  +++ +      
Sbjct: 146 AARRHAHWQALVRAACEQCGRNQLPDVAPPTDVMAWLESSVALPRDNALRLLLSPRA--- 202

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E     L   A    V ++IGPEGG  + E+    S  F+ PL LGPR+LR++TA +A +
Sbjct: 203 ERPFAALPDTAPAAPVIVMIGPEGGLSATEEAAAISHGFM-PLGLGPRVLRTETAGIAVL 261

Query: 235 ALVQAICGDW 244
           A + A  G W
Sbjct: 262 AALAARWGGW 271


>gi|326797241|ref|YP_004315061.1| ribosomal RNA small subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
 gi|326548005|gb|ADZ93225.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
          Length = 243

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++VD  L   T+       + +   VLR+KEG  I+LFNG  GE+ + +  V K  
Sbjct: 2   RIPRIYVDIDLTEHTEIILPDSAFQHCCKVLRLKEGHAIILFNGDGGEYDATLYNVQKRA 61

Query: 66  RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
                   R         V    S  +  R+DY IQK+VE G+  I+P+ +   +     
Sbjct: 62  ASAQLTTYRVLENESPLKVTIGQSLSRGERMDYAIQKAVESGVFRIQPLFSERCEVKLQE 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +   +   ISAAEQC    +P I  P  L   ++  +   +I     +    + 
Sbjct: 122 DRMEKRLKHWQQVAISAAEQCGRGVVPKILEPINLLDWVEKCNEMLKITLHHHSAKPIHD 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E+        ++A+LIGPEGG    E E      F   ++LGPR+LR++TA V A+  +
Sbjct: 182 FER----PPENSIALLIGPEGGLTDIEVEKASLFGF-QSIALGPRVLRTETAPVVALTTL 236

Query: 238 QAICGD 243
             + GD
Sbjct: 237 NLMWGD 242


>gi|295399227|ref|ZP_06809209.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978693|gb|EFG54289.1| protein of unknown function DUF558 [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 249

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R FV             GD YH++ HV+RM++G  ++         L +I  +  + +
Sbjct: 1   MQRYFVPDDQVENDHLIIQGDDYHHIVHVMRMEKGSKLICVLSCHKTALCQIEQITNERV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +VE     QT+     YI     K ++L+ +IQK  E+G  +  P +   +      +
Sbjct: 61  IVRVEEWINEQTELPIQIYIAHGLPKGDKLELVIQKGTELGAASFIPFMAARSIVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
             +  ++R +     AAEQ     +P I+ P T++ L++        +FA E    +   
Sbjct: 121 KANKKLERWKKIAKEAAEQSHRGKIPDIHAPMTIDELVEFAKIADYRLFAYEEEAKQRNH 180

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L  + H  ++  + GPEGG+  EE E L    F +  SLGPRILR++TA +  +
Sbjct: 181 RTLAAILRQMKHGQSLLAVFGPEGGFSGEEVELLKQHGFFS-CSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           A      
Sbjct: 240 AAASYQF 246


>gi|114800139|ref|YP_760086.1| 16S ribosomal RNA methyltransferase RsmE [Hyphomonas neptunium ATCC
           15444]
 gi|114740313|gb|ABI78438.1| conserved hypothetical protein TIGR00046 [Hyphomonas neptunium ATCC
           15444]
          Length = 256

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 14/255 (5%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
            + + RLFVD PL          +Q +YL  VLR+++G ++ LFNG+DGEW + +     
Sbjct: 1   MATIPRLFVDAPLAEAGAVALDDEQSNYLLRVLRLEDGASVRLFNGRDGEWTATVHKTSA 60

Query: 63  KSIRFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           K        Q+R+Q  Q  + +  +F+P+K ++ D +++K+ E+G   IRPV+T  TQ  
Sbjct: 61  KRAEATPSRQTRTQPGQIGTRLTLLFAPVKKDQTDLILEKATELGAARIRPVLTERTQTR 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--------- 171
               DR R   + AAEQ + L LP I    +L+  L   +    ++F DE          
Sbjct: 121 TVRADRFRKIALEAAEQTERLDLPEILDLASLDAALDALEPGTAVIFCDEAGDEAEAPWG 180

Query: 172 --CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
              G    + ++       + AIL GPEGG+   E+  L       P+SLGPRILR++TA
Sbjct: 181 GQAGRARPMLEVLEELKGRSAAILTGPEGGFTPAERAFLRGRAETWPVSLGPRILRAETA 240

Query: 230 AVAAMALVQAICGDW 244
           A++AM L QA+CGDW
Sbjct: 241 AISAMTLWQAVCGDW 255


>gi|325201437|gb|ADY96891.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           M01-240149]
 gi|325207417|gb|ADZ02869.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           NZ-05/33]
          Length = 241

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|147677216|ref|YP_001211431.1| 16S ribosomal RNA methyltransferase RsmE [Pelotomaculum
           thermopropionicum SI]
 gi|146273313|dbj|BAF59062.1| Uncharacterized protein conserved in bacteria [Pelotomaculum
           thermopropionicum SI]
          Length = 249

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 9/245 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV        +   +G    ++  VLR+  GD + + +G+   + + I   G +  
Sbjct: 1   MPRFFVSPEQIKDGRIIITGPDVVHITRVLRLGRGDCLTVLDGRGRSYEAVIEKAGAAEV 60

Query: 67  FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             V     +        V  +    + +++D+++QK  E+GM  + P+I R +       
Sbjct: 61  VCVAGSVTAAGGLPAVKVTLVQGIPRGDKMDFIVQKGTELGMHRLIPLICRRSVVKLEGD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   ++R R   + A++QC    +P +  P   + +L         +   E    E   
Sbjct: 121 KSFRRLERWRRIALEASKQCRRPDVPEVDAPAGWDRVLAGMPPEAAALIPWEEEDGETLK 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L        V + IGPEGG+   E +   ++  V P++LGPRILR++TA +A + +V 
Sbjct: 181 DFLRRSLPKEEVYVFIGPEGGFDPGEVDKARAVG-VRPVTLGPRILRTETAGLAVLVMVL 239

Query: 239 AICGD 243
              GD
Sbjct: 240 YQWGD 244


>gi|194100123|ref|YP_002003263.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria gonorrhoeae
           NCCP11945]
 gi|240122667|ref|ZP_04735623.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268681265|ref|ZP_06148127.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|193935413|gb|ACF31237.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268621549|gb|EEZ53949.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 241

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVDLPDNIVRHL-NVLRIRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|91785218|ref|YP_560424.1| hypothetical protein Bxe_A0561 [Burkholderia xenovorans LB400]
 gi|91689172|gb|ABE32372.1| Conserved hypothetical protein 46 [Burkholderia xenovorans LB400]
          Length = 251

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV  PL      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  V + S 
Sbjct: 6   MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + ++ E+++        +         +++D++I+K+VE+G  A  P+ T  +      +
Sbjct: 65  KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLTGE 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                    +    ++ EQC    LP + P   +   L        + + +I+ +     
Sbjct: 125 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPRAS- 183

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              S   L A      V +L+GPEGG+ + E+       F T + LGPR++R++TA +A 
Sbjct: 184 --ISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAGIAV 240

Query: 234 MALVQAICGDW 244
           ++ + A  G W
Sbjct: 241 LSALAAGWGGW 251


>gi|262368644|ref|ZP_06061973.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316322|gb|EEY97360.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 238

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 17/242 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R F++  L +    + +   +H+   VLR + G+   LFNG+ GE+   +S V K   
Sbjct: 1   MPRFFMEAELNVDHTVELTETVFHHWVKVLRAQVGETATLFNGQGGEYEVTLSDVAKKSA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                 +   ++T            K +R+DY+IQK+VE+G+  I+ + +   +      
Sbjct: 61  SVQVTAFNPTNRTPAFKALLGQVMSKGDRMDYVIQKAVELGVSEIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +D  +   I+A EQC +  +P I  P +LE  L +     ++V A          
Sbjct: 121 RDQKKIDHWQGIAIAACEQCGMNLVPKILAPVSLEKWLASELPATRLVLAPNK------- 173

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           EKL  +AH  PN+A+LIGPEGG    E  T +   F++   +G R+LR++TA V A++++
Sbjct: 174 EKLDVLAHATPNIALLIGPEGGLSEAEIITANEHGFIS-WCIGERVLRTETAPVVALSIL 232

Query: 238 QA 239
             
Sbjct: 233 NY 234


>gi|240117029|ref|ZP_04731091.1| 16S rRNA m3U1498 methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268602715|ref|ZP_06136882.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268586846|gb|EEZ51522.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 241

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTARLTVLEKHRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTRLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|94311915|ref|YP_585125.1| 16S ribosomal RNA methyltransferase RsmE [Cupriavidus metallidurans
           CH34]
 gi|93355767|gb|ABF09856.1| conserved hypothetical protein DUF558 [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 12/247 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R FVD  L   T  +       +   VLR+  GD I LFNG+ G   + ++ +GK    
Sbjct: 3   PRFFVDAALAADTVLELPDAVVRH-VQVLRLAPGDAITLFNGQGGSHPATLTEIGKRHAS 61

Query: 68  KVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
                + +        V         +++D++I+K+VE+G+ AI+P+    +      + 
Sbjct: 62  ATLGTHDASEAETPFAVTLAQGLAGGDKMDWLIEKAVELGVSAIQPLQAARSVVRLSGER 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSL 178
                   +    +A EQC    LP + P   LE  L +      ++  +     S   L
Sbjct: 122 ATKRQAHWQALIEAACEQCGRNRLPALAPVANLESWLTSVPATAARLALSPRASASLPEL 181

Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +    A     V +LIGPEGG   EE++      F+  +SLGPRILR++TA +  +A +
Sbjct: 182 AQAEREAWRAGGVTLLIGPEGGLSPEEEDRARRAGFI-GVSLGPRILRTETAGLTCLATL 240

Query: 238 QAICGDW 244
            AI G +
Sbjct: 241 NAILGGF 247


>gi|23010926|ref|ZP_00051451.1| COG1385: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 250

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/240 (45%), Positives = 142/240 (59%), Gaps = 4/240 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIR 66
            RLFV+  L           Q +YL  VLR  E D +LLFNG+DGEW ++I   G KS  
Sbjct: 9   PRLFVESDLAEGLILPLERAQANYLLTVLRRSETDPVLLFNGRDGEWRAEIVPQGRKSAD 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +V  ++R Q    D+ Y+F+P+KT RLDYM QK+VEMG G IRPV TR+TQ     ++R
Sbjct: 69  LRVVTRTRPQPAPPDLHYLFAPLKTGRLDYMAQKAVEMGAGLIRPVFTRFTQGERIKLER 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL---EKLHA 183
           +R   + AAEQC IL++P I  P  L   L        +VF DE     + +        
Sbjct: 129 LRANAVEAAEQCGILSIPEIAEPARLPACLDALAPERLLVFCDEDAPVSDPVAALRAAAD 188

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            AH P +A+L+GPEGG+H EE+  + + P    LSLGPRILR+DTAAVA + LVQA+ GD
Sbjct: 189 PAHPPPLAVLVGPEGGFHEEERALIAARPNTVALSLGPRILRADTAAVAVLTLVQAVLGD 248


>gi|296160467|ref|ZP_06843283.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1]
 gi|295889216|gb|EFG69018.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV  PL      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  V + S 
Sbjct: 1   MPRFFVGTPLQSDDIMQLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + ++ E+++        +         +++D++I+K+VE+G  A  P+ T  +      +
Sbjct: 60  KVRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                    +    ++ EQC    LP + P   +   L        + + +I+ +     
Sbjct: 120 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDLRILLSPRAS- 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              S   L A      V +L+GPEGG+ + E+       F T + LGPR++R++TA +A 
Sbjct: 179 --ISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGF-TAVGLGPRVMRTETAGIAV 235

Query: 234 MALVQAICGDW 244
           ++ + A  G W
Sbjct: 236 LSALAAGWGGW 246


>gi|254804259|ref|YP_003082480.1| hypothetical protein NMO_0244 [Neisseria meningitidis alpha14]
 gi|304388478|ref|ZP_07370582.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091]
 gi|254667801|emb|CBA03770.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
 gi|304337534|gb|EFM03699.1| 16S rRNA methyltransferase RsmE [Neisseria meningitidis ATCC 13091]
          Length = 241

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|293376255|ref|ZP_06622498.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909]
 gi|325845140|ref|ZP_08168449.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1]
 gi|292645147|gb|EFF63214.1| RNA methyltransferase, RsmE family [Turicibacter sanguinis PC909]
 gi|325488805|gb|EGC91205.1| RNA methyltransferase, RsmE family [Turicibacter sp. HGF1]
          Length = 248

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R F+        Q + + +  H++A V+RM+ G+ I++ N     +   I+ V    +
Sbjct: 1   MQRYFLKNHQFQAKQVRITDEDAHHIARVMRMEVGERIIVCNEDKECYYLTITAVTPDEV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++ E          +V       K ++ +++IQK+ E G     PV           +
Sbjct: 61  TGEIGEAIESDTELPIEVTIAQGLPKGDKFEWVIQKATECGATNFMPVSMERCVVKLDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R       AAEQ     +P ++   T +  L+   H    +FA E    +  L
Sbjct: 121 KEVKKVERWNKIAKEAAEQSHRQVVPKVHSVHTFKAFLEQSKHYDVCLFAYEETAKQGEL 180

Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L      I     + +L+GPEGG   +E + L    F  P +LGPRILR++TA + A+
Sbjct: 181 AQLKQTLENIKPGATLLLLVGPEGGVGEKEVDLLIQHGF-KPCALGPRILRTETAPIYAL 239

Query: 235 ALVQAIC 241
           + +    
Sbjct: 240 SAISFAL 246


>gi|225574856|ref|ZP_03783466.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037930|gb|EEG48176.1| hypothetical protein RUMHYD_02934 [Blautia hydrogenotrophica DSM
           10507]
          Length = 246

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           +KR F       + +   +G+  +++  VLRM+EG+ + + +G+  E+  +I  +    I
Sbjct: 1   MKRFFAKPEQIDEREIHITGEDVNHIRQVLRMREGEELWVSDGEKKEYHCRIKDFQQDEI 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             ++ Y   S     S +       K ++++ +IQK+VE+G   + PV T          
Sbjct: 61  LLEILYAQESDYELPSRIYLFQGLPKGDKMELIIQKAVELGAFEVIPVATSRCVVKLDKK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                 +R +    +AA+Q   L +P I+P  +L   L      + +++  +   G   +
Sbjct: 121 KAAKKQERWQEIARNAAKQSRRLLVPQIHPVCSLREALDYSGSLDVKLLPYELAKGMRQT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  I    ++ I IGPEGG+  EE E   ++  V P++LG RILR++TA +  ++++
Sbjct: 181 KETLAGIKRGQSIGIFIGPEGGFAPEEVEQAMAVG-VEPITLGKRILRTETAGMTVLSIL 239

Query: 238 QAICGD 243
                D
Sbjct: 240 MFQLED 245


>gi|21232316|ref|NP_638233.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767551|ref|YP_242313.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188990664|ref|YP_001902674.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. campestris str. B100]
 gi|21114084|gb|AAM42157.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572883|gb|AAY48293.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732424|emb|CAP50618.1| Conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 244

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R +V  PL          +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSYVALPLHSGGDVTLPEESANHLLRVLRLREGDACVLFNGDGSDYHARITVAGKRE 61

Query: 66  RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
              V  +    S      +  +    +  ++D ++QK+ E+G+ A+ PV    T+     
Sbjct: 62  ARAVVERVEAVSNEPPLAITLLQGIARGEKMDLILQKATELGVTAVVPVNAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 M   R+  +SA EQ     +P + PP++L+   +  D     +  D     E+ 
Sbjct: 122 ARLEKRMAHWRSVIVSACEQSGRARIPSLAPPSSLQDAARASDAQALRLTLD--PHGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A+     + + IGPEGG+   ++ TL    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-AVQPGQELIVAIGPEGGWSPRDRTTLGEAGF-TGLRLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|266621760|ref|ZP_06114695.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM
           13479]
 gi|288866557|gb|EFC98855.1| RNA methyltransferase, RsmE family [Clostridium hathewayi DSM
           13479]
          Length = 245

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 116/241 (48%), Gaps = 10/241 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +   FV+     +     +G   +++ +VLRMK G+ +L+ NG D +++ ++  +   ++
Sbjct: 1   MYHFFVNQEQIGQDTVTVTGPDVNHIKNVLRMKPGEEVLISNGVDKDYVCRLQTITSDAV 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++   +   T+  +         K+++++++IQK+VE+G+  + PV TR T      +
Sbjct: 61  TAEIVTVTEGGTELPAKFYLFQGLPKSDKMEFLIQKAVELGVYQVIPVETRRTVVKLDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENS 177
                + R    + SAA+Q   L +P +    T +  L       + I+  +   G  ++
Sbjct: 121 KVEAKVRRWNAVSESAAKQSKRLIIPEVTGVMTFQEALNYAGGFDKNIIPFEHAEGMADT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                 I    +  I IGPEGG+  EE         V P++LG RILR++TA +A ++++
Sbjct: 181 KAYFAGIRPGMSCGIFIGPEGGFEDEEISQASEAG-VKPVTLGKRILRTETAGLAVLSVL 239

Query: 238 Q 238
            
Sbjct: 240 M 240


>gi|229163256|ref|ZP_04291211.1| RNA methyltransferase, RsmE [Bacillus cereus R309803]
 gi|228620319|gb|EEK77190.1| RNA methyltransferase, RsmE [Bacillus cereus R309803]
          Length = 249

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R++     AAEQ     +P ++ P + + LL   +     + A E    +   
Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSNEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEIAMLREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|239827772|ref|YP_002950396.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. WCH70]
 gi|239808065|gb|ACS25130.1| protein of unknown function DUF558 [Geobacillus sp. WCH70]
          Length = 249

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R FV        +    GD YH++  V+RM++G  ++     +   L KI  +  + +
Sbjct: 1   MQRYFVSDDQVKNDRLIIQGDDYHHIVRVMRMEKGSELICVLPSNKAVLCKIEQITNEHV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +V      QT+     YI     K ++L+++IQK  E+G  +  P +   +      +
Sbjct: 61  IVRVVKWIDEQTELPIQIYIAHGLPKGDKLEFVIQKGTELGASSFIPFVAARSIVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
             +  ++R +     AAEQ     +P ++ P T+  L++        VFA E    + + 
Sbjct: 121 KANKKLERWKKIAKEAAEQSHRGKIPDVHAPMTIHELIEFAKTVDYRVFAYEEEAKQGNH 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + L A+        ++  + GPEGG+  EE E      F +  SLGPRILR++TA +  +
Sbjct: 181 QTLAAVFQQMKRGHSLLAVFGPEGGFSDEEVELFKHHGFFS-CSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           A+     
Sbjct: 240 AVASYQF 246


>gi|310643066|ref|YP_003947824.1| protein [Paenibacillus polymyxa SC2]
 gi|309248016|gb|ADO57583.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 254

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 15/250 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+     ++     +G+   ++A V+R + GD I++ +G   E L+ +  + +   
Sbjct: 1   MQRYFIPAEQFLEDHVIVTGEDARHIAKVMRGRSGDKIIVSDGVSREALAALDTIEQDHV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                +    T +  VQ   +    K ++++ ++QK  E+G     P ++  T      +
Sbjct: 61  KATIIEPLEMTSEPYVQITIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P +  P T + LL ++     I +  E        
Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEVSAPLTWKELLASFAGYDLICYCYEKEQGRQLR 180

Query: 179 EKLHAIA------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + +   A        P V +++GPEGG+   E              LG RILR++TA + 
Sbjct: 181 DVIQPFAGHWASTDKPRVLVVVGPEGGFTEAESLEAEQAG-AQSTGLGRRILRAETAGMV 239

Query: 233 AMALVQAICG 242
           A+A +    G
Sbjct: 240 ALACILYETG 249


>gi|14026505|dbj|BAB53102.1| mll6903 [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/220 (45%), Positives = 138/220 (62%), Gaps = 2/220 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++RLFV   L    +  A   Q HYL HVLR+ EG  ILLFNG+DGEW + I+   K  +
Sbjct: 1   MQRLFVPDDLGPDAEFDADQQQSHYLIHVLRLGEGAEILLFNGRDGEWSAAIAAKSKKAV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           R +V+   R Q    D+ Y F+P+K  RLDY++QK+VEMG G ++PVIT++TQ    ++D
Sbjct: 61  RLRVQTLQRPQPPLPDLIYCFAPLKQGRLDYLVQKAVEMGAGILQPVITQHTQVAKPSID 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   + AAEQC IL +P +      E LL  WD   ++VF DE   + N L  L A+ 
Sbjct: 121 RLRANVVEAAEQCGILAVPEVREAEKFERLLAGWDKERRLVFCDEDASTNNPLPALRAVK 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
               +A+L+GPEGG+  +E++ L +LPFVT + LGPRILR
Sbjct: 181 E-KKLALLVGPEGGFSDDERKMLRALPFVTAIPLGPRILR 219


>gi|262278363|ref|ZP_06056148.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258714|gb|EEY77447.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 240

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F++  L +    + +   +H+   VLR +  +   LFNG+ GE+L+ ++ + K   
Sbjct: 1   MNRFFIETELTVGLTIQLTETVFHHWVRVLRAQLQEQATLFNGQGGEYLATLTEINKKNA 60

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F          +             K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVTIESFNPTNRSAPFKAVLGQVMSKGDRMDYAIQKATELGVSQIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  +   I+A EQC +  +P +  P +L   L +      + V A E    +  
Sbjct: 121 RDQKKLDHWQAIAIAACEQCGLNLVPEVLAPISLSEWLSSTQLPASKFVLAPE----KEQ 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++TA V A++++
Sbjct: 177 KDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|170695362|ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M]
 gi|170139762|gb|EDT07944.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M]
          Length = 246

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV   L      +   D   ++  VLR++ GD+I+LFNG+ GE+ ++++ + +   
Sbjct: 1   MPRFFVGTSLSPDDIVQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELAAIERRAV 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R         +         +++D++I+K+VE+G  +  P+ T  +      +
Sbjct: 60  TVKIREFRDIEVETPYRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCG 173
                         ++ EQC    LP + P   +   L            +I+ +     
Sbjct: 120 RAARRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLSAMPRVPAGDELRILLSPRAS- 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  L A      V +L+GPEGG+ + E+       F   + LGPR+LR++TA +A 
Sbjct: 179 --IPFSALPAAPPKGPVTVLVGPEGGFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGMAV 235

Query: 234 MALVQAICGDW 244
           ++ + A  G W
Sbjct: 236 LSALAAGWGGW 246


>gi|229543807|ref|ZP_04432866.1| protein of unknown function DUF558 [Bacillus coagulans 36D1]
 gi|229324946|gb|EEN90622.1| protein of unknown function DUF558 [Bacillus coagulans 36D1]
          Length = 250

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R F+D P   + + + SG+ YH++A V+RM  G         +   + +I  + G ++
Sbjct: 1   MQRYFLDRPYRGEQEIRLSGENYHHIARVMRMSVGSRFYGVFSDEKVCICEIGEITGDAV 60

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
             ++  +++  +     V       K ++L+++IQK  E+G     P      V+   T+
Sbjct: 61  VARITGWETAVKELPVHVTVSCGLPKADKLEWIIQKGTELGAFQFLPFLAERSVVKWDTK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGS--- 174
                 +R +     AAEQ     LP I PP + + L++    +  ++V  +E       
Sbjct: 121 KEAKKRERWQKIAQEAAEQSHRSHLPEISPPVSFQQLIEESHTYQYKLVAFEENAKEGEQ 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E L  ++   NV  + GPEGG   +E   L +  FV+   LGPRILR++TA +  +
Sbjct: 181 HRFAELLSNMSEGGNVLAVFGPEGGLSLDEIRRLEAAGFVS-CGLGPRILRAETAPLYVL 239

Query: 235 ALVQAIC 241
           + +    
Sbjct: 240 SAISYHF 246


>gi|121635582|ref|YP_975827.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18]
 gi|120867288|emb|CAM11059.1| hypothetical protein NMC1899 [Neisseria meningitidis FAM18]
          Length = 241

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     +++S++ K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLSFLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|261363907|ref|ZP_05976790.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996]
 gi|288567910|gb|EFC89470.1| 16S rRNA methyltransferase RsmE [Neisseria mucosa ATCC 25996]
          Length = 241

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R ++   L      +   +   +L +VLR++ G+ ++LFNG    + +++  + K   
Sbjct: 1   MSRFYLPDALYAGQVVELPDNVVRHL-NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  +         +  + S     R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  CAEVLREEETDNESPLKITLVQSVSSGERMDFTLQKSVELGVVAIQPVISERCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P       LK        +       S N  
Sbjct: 120 RADKRVARWQEIVVSACEQSGRNIVPEVRPLLPYREALKQMSSETTKLLM-----SLNRA 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + L A+     ++  ++GPEGG+  EE++      F   ++LG R+LR++TA++AA+A +
Sbjct: 175 QSLRAVKPFSDDLIFMVGPEGGWTDEEEQLAFEAGF-QSVTLGKRVLRTETASLAAIAAM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|73542528|ref|YP_297048.1| hypothetical protein Reut_A2843 [Ralstonia eutropha JMP134]
 gi|72119941|gb|AAZ62204.1| Conserved hypothetical protein 46 [Ralstonia eutropha JMP134]
          Length = 249

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 14/249 (5%)

Query: 8   KRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            R FV   D  L   T          +   VLR+  GD I LF+G+ G   + +  +GK 
Sbjct: 3   PRFFVGSADAALAAGTDFDLPEAVVRH-VQVLRLAPGDAITLFDGRGGSHAATLLDLGKR 61

Query: 65  IRFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                  E  +        V         +++D++I+K+VE+G+ AI+P+    +     
Sbjct: 62  HALARVGERDNTETEPPFRVMLAQGLAGGDKMDWLIEKAVELGVTAIQPLQAARSVVRLS 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                      +    +A EQC    LP + P T L+  L+      +++ +     S  
Sbjct: 122 GDRAQKRQAHWQALVEAACEQCGRNRLPAVAPVTNLDTWLRAAGEGNRLLVSPRADQSLP 181

Query: 177 SLEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +    + ++ +   V +LIGPEGG   EE++      F T +SLGPRILR++TA +A +A
Sbjct: 182 AYAAANRVSLLAGGVTLLIGPEGGLAPEEEDAALHAGF-TAVSLGPRILRTETAGLACLA 240

Query: 236 LVQAICGDW 244
            + A+ G +
Sbjct: 241 TLNALLGGF 249


>gi|292493337|ref|YP_003528776.1| hypothetical protein Nhal_3352 [Nitrosococcus halophilus Nc4]
 gi|291581932|gb|ADE16389.1| protein of unknown function DUF558 [Nitrosococcus halophilus Nc4]
          Length = 243

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   PL I +          ++  VLR++ G  + LF+G+  E+ + +  V K  
Sbjct: 2   RVPRIYSSLPLSIGSSVVLDERALQHVVRVLRLRAGAELWLFDGRGTEYRAVLETVEKRS 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E   R+     D+       +  R+DY +QK+VE+G+  I P+ T  +      
Sbjct: 62  AEARILERMERNVESPLDIILGQGISRGERMDYALQKAVELGVSGIVPLFTERSAVHLSG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R   ISA EQC     P +  P +L   L +      ++       S   
Sbjct: 122 ERLEKRLRHWRGVVISACEQCGRNYTPGVDTPRSLAAFLGDCHAGLAVLLDPR---SHRP 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+ L +      + +LIGPEGG    E +      F+  +SLGPR+LR++TA VAA+  +
Sbjct: 179 LKTLPSPL-GKRLILLIGPEGGLSEVEVKEAQQAGFI-DVSLGPRVLRTETATVAALTAL 236

Query: 238 QAICGD 243
           Q + GD
Sbjct: 237 QLLWGD 242


>gi|167757694|ref|ZP_02429821.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704]
 gi|167664576|gb|EDS08706.1| hypothetical protein CLOSCI_00024 [Clostridium scindens ATCC 35704]
          Length = 245

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64
           ++  FV        +    G   +++ +VLRM+ G+ + + +G + ++   +     G++
Sbjct: 1   MQHFFVTPSQVEGERIYIEGSDVNHMKNVLRMRPGEAVAISDGDNLKYRCVVEGYEEGRA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +    +           +       K ++++ ++QK+VE+G   + PV TR +      +
Sbjct: 61  VLAIQQRMPVDTELPCRIILFQGLPKQDKMELIVQKAVELGASQVVPVATRRSVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                + R +    SAA+Q     +P +    + +  L+   + +  ++  +   G E +
Sbjct: 121 KAAKKLQRWQQIAESAAKQAGRGYIPQVSSVLSYQEALEKAGELDVLLIPYELAEGMEEA 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + + +IA   +V I IGPEGG+  EE +          ++LG RILR++TA +A ++++
Sbjct: 181 RKVVASIAQGQSVGIFIGPEGGFEKEEVDAAIRQG-AKAITLGRRILRTETAGLAILSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFRL 243


>gi|295706647|ref|YP_003599722.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium DSM 319]
 gi|294804306|gb|ADF41372.1| ribosomal RNA small subunit methyltransferase E [Bacillus
           megaterium DSM 319]
          Length = 250

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      +     + D  H+++ V+RM EG   +  N +    L +I  +  +  
Sbjct: 1   MQRYFLPNDQFQEQSVIVTQDDAHHISRVMRMNEGSQFIACNEQGQAALCEIENISANEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E+ S  +     V  +    K ++L+ +IQK  E+G     P I   +      +
Sbjct: 61  KASIIEWISEEKELPVHVTIVNGLPKGDKLELIIQKGTELGAYKFIPFIAARSVVKWDDK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   +DR       AAEQ     +P +  P + + L++        V A E    +   
Sbjct: 121 KSQKKVDRWNKIAKEAAEQSHRTIVPAVEAPISFKKLVEISGDYTHKVVAYEERAKQGET 180

Query: 179 EKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             LH    A+    +V +++GPEGG   +E   L    F      GPRILR++TA + A+
Sbjct: 181 SHLHAVLSALKPGHSVLVVVGPEGGLTEQEVGVLEENEFTIS-GFGPRILRAETAPLYAL 239

Query: 235 ALVQA 239
           + +  
Sbjct: 240 SAISY 244


>gi|16079598|ref|NP_390422.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310469|ref|ZP_03592316.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314792|ref|ZP_03596597.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319715|ref|ZP_03601009.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323992|ref|ZP_03605286.1| 16S rRNA m3U1498 methyltransferase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730989|sp|P54461|RSME_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|1303811|dbj|BAA12467.1| YqeU [Bacillus subtilis]
 gi|1890060|dbj|BAA12079.1| YqeU [Bacillus subtilis]
 gi|2634990|emb|CAB14486.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 256

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD-FPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     I+       +G++ H++ +V+RM EGD I+  +    E   ++  V K
Sbjct: 1   MQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60

Query: 64  SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                  +E+ + ++     V       K ++L+++IQK  E+G  A  P     +    
Sbjct: 61  DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    + + LL+      + V A E    +
Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 180

Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             +    AI        ++ I+ GPEGG    E E L     VT   LGPRILR++TA +
Sbjct: 181 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 240 YALSAISY 247


>gi|225076881|ref|ZP_03720080.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens
           NRL30031/H210]
 gi|224951767|gb|EEG32976.1| hypothetical protein NEIFLAOT_01932 [Neisseria flavescens
           NRL30031/H210]
          Length = 241

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 120/247 (48%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKS 64
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG    + +  ++    ++
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  ++       ++  + +     R+D+ +QKSVE+G+  IRPVI+         +
Sbjct: 60  SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +   +SA EQ     +P + P TT    L+        +       S N  
Sbjct: 120 RAEKRVERWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQLPQETTKLLM-----SLNRA 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +KL  +      V  ++GPEGG+  +E++      F   ++LG R+LR++TA++AA+A +
Sbjct: 175 QKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIAAM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|52081092|ref|YP_079883.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
           ATCC 14580]
 gi|52786471|ref|YP_092300.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus licheniformis
           ATCC 14580]
 gi|319644950|ref|ZP_07999183.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2]
 gi|52004303|gb|AAU24245.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52348973|gb|AAU41607.1| YqeU [Bacillus licheniformis ATCC 14580]
 gi|317392759|gb|EFV73553.1| hypothetical protein HMPREF1012_00216 [Bacillus sp. BT1B_CT2]
          Length = 255

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     +         G+  H++A V+RM  GD ++       E   +I  V K
Sbjct: 1   MQRYFIEQSKQEVTAAPAFSIKGEDVHHIATVMRMSPGDEVICCAKDGHEAKCRIESVTK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT- 120
                   +   +T++  VQ   +    K ++L+++IQK  E+G  +  P     +    
Sbjct: 61  EEVLLSVIEWTGETRELPVQIHIANGLPKGDKLEWIIQKGTELGASSFIPFQASRSVVKL 120

Query: 121 -----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                    +R       AAEQ     +P + P  T + LL++ +   + V A E    +
Sbjct: 121 DEKKAKKKRERWAKIAKEAAEQSHRNAIPDVAPVHTFQRLLESLEDFDKCVVAYEESSKQ 180

Query: 176 NSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
               +    L +++   +V ++ GPEGG+  EE E L          LGPRILR++TA +
Sbjct: 181 GETSRFQSVLKSLSEGSSVLMVFGPEGGFTEEEIEALKEKG-ALACGLGPRILRAETAPL 239

Query: 232 AAMALVQA 239
            A+A V  
Sbjct: 240 YALAAVSY 247


>gi|307941761|ref|ZP_07657116.1| surface protein [Roseibium sp. TrichSKD4]
 gi|307775369|gb|EFO34575.1| surface protein [Roseibium sp. TrichSKD4]
          Length = 252

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/228 (40%), Positives = 147/228 (64%), Gaps = 6/228 (2%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
              ++RLF+   L    + +A   Q +YL +VLR+K+GD +L F+G++GEWL++I   G 
Sbjct: 5   EFKMQRLFLRHILADGARIEADRSQANYLLNVLRLKDGDKVLAFDGQNGEWLTEIKVTGR 64

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           K+   ++  Q+R Q K +D+ Y+F+P+K  RLDYM+QK+VEMG+G+++PV+T++TQ +  
Sbjct: 65  KACVLELVEQTRPQEKSADLLYLFAPLKHARLDYMVQKAVEMGVGSLQPVMTQHTQTSRV 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLE 179
           N++R+    I AAEQC +L++P +  P  L+ LL NW        ++F DE   + N L 
Sbjct: 125 NLERMEANVIEAAEQCGVLSVPGVVEPEPLKALLANWPEKHPGRVLLFCDEGSETTNPLG 184

Query: 180 KLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L  +  A   ++A+L+GPEGG+ +EE+  LH   FV  + LGPRILR
Sbjct: 185 DLAKLVEAKPESIALLVGPEGGFSTEERSILHQSDFVVSIPLGPRILR 232


>gi|321312028|ref|YP_004204315.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5]
 gi|320018302|gb|ADV93288.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis BSn5]
          Length = 256

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD-FPLCIKTQ--GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     I+       +G+  H++ +V+RM EGD I+  +    E   ++  V K
Sbjct: 1   MQRYFIELTKQQIEEAPAFSITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60

Query: 64  SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                  +E+ + ++     V       K ++L+++IQK  E+G  A  P     +    
Sbjct: 61  DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    + + LL+      + V A E    +
Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 180

Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             +    AI        ++ I+ GPEGG    E E L     V P  LGPRILR++TA +
Sbjct: 181 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGV-PCGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 240 YALSAISY 247


>gi|255065808|ref|ZP_05317663.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256]
 gi|255050126|gb|EET45590.1| 16S rRNA methyltransferase RsmE [Neisseria sicca ATCC 29256]
          Length = 241

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R ++   L      +   +   +L +VLR++ G+ ++LFNG    + +++  + K   
Sbjct: 1   MSRFYLPDDLYAGQVVELPDNVVRHL-NVLRVRCGEEVVLFNGNGKAYPARLDVLEKRRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  +         +  + S     R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  CAEVLREEEADNESPLKITLVQSVSSGERMDFTLQKSVELGVVAIQPVISERCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P       LK        +       S N  
Sbjct: 120 RADKRVARWQEIVVSACEQSGRNIVPEVRPLLPYREALKQMSSETTKLLM-----SLNRA 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + L  +     ++  ++GPEGG+  EE+       F   ++LG R+LR++TA++AA+A +
Sbjct: 175 QSLRTVKPFSDDLIFMVGPEGGWTDEEERMAFEAGF-QSVTLGKRVLRTETASLAAIAAM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|194017737|ref|ZP_03056347.1| protein YqeU [Bacillus pumilus ATCC 7061]
 gi|194010637|gb|EDW20209.1| protein YqeU [Bacillus pumilus ATCC 7061]
          Length = 256

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F+D     +  K     +G+  H+L++V+RMK G  IL       E LSKI  + K
Sbjct: 1   MQRYFIDLTKEEVIAKGSIVINGEDVHHLSNVMRMKAGQEILCLTTDGFEGLSKIDTITK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
                      +Q ++  V+   +    K ++L+ +IQK  E+G  A  P     +    
Sbjct: 61  EEVICHVEGWTNQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITKI 120

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             + +H   +R       AAEQ     +P + P +T + L +      + V A E    E
Sbjct: 121 DQKKSHKKRERWEKIAKEAAEQSYRNIIPRVDPVSTFKELTQLAGEFDKCVVAYEESSKE 180

Query: 176 NSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
               +    L  +     + ++ GPEGG   +E E L +   V    LGPRILR++TA +
Sbjct: 181 GEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETHGAV-ICGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 240 YALSAISY 247


>gi|153828383|ref|ZP_01981050.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876092|gb|EDL74227.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 243

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGFGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSINT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTE 225


>gi|228999104|ref|ZP_04158686.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17]
 gi|228760721|gb|EEM09685.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock3-17]
          Length = 249

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+         +  GD  H++A V+RM  GD+I          +  I+ +     
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAMCTIAEITSEFV 59

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  DSAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R++     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L A+     + ++ GPEGG   EE   L    F+ P SLGPRILR++TA + A+
Sbjct: 180 ANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|325127441|gb|EGC50371.1| hypothetical protein TIGR00046 [Neisseria meningitidis N1568]
          Length = 241

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLADIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|15640496|ref|NP_230123.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153823176|ref|ZP_01975843.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229509057|ref|ZP_04398545.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           B33]
 gi|229519725|ref|ZP_04409168.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC9]
 gi|229606238|ref|YP_002876886.1| 16S ribosomal RNA methyltransferase RsmE [Vibrio cholerae MJ-1236]
 gi|254850701|ref|ZP_05240051.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744284|ref|ZP_05418237.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera
           CIRS 101]
 gi|9654895|gb|AAF93642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126519302|gb|EAZ76525.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229344414|gb|EEO09389.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           RC9]
 gi|229353982|gb|EEO18916.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           B33]
 gi|229368893|gb|ACQ59316.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholerae
           MJ-1236]
 gi|254846406|gb|EET24820.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738224|gb|EET93616.1| ribosomal RNA small subunit methyltransferase E [Vibrio cholera
           CIRS 101]
          Length = 243

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++   P+        S D   ++  VLRM+ G  +LLF+G   E+ + IS VGK  
Sbjct: 2   RIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQ 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E    S     D+       + +++++ IQKSVE+G+  I P+++         
Sbjct: 62  VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   ISA EQC   T+P I P   LE          ++        S N+
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNT 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           L        +  V +LIGPEGG  +EE +      F   L LGPR+LR++
Sbjct: 182 LPT-----PVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTE 225


>gi|229006652|ref|ZP_04164286.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4]
 gi|228754513|gb|EEM03924.1| RNA methyltransferase, RsmE [Bacillus mycoides Rock1-4]
          Length = 249

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+         +  GD  H++A V+RM  GD+I          +  I+ +     
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAMCTIAEITSEFV 59

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  DSAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R++     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMNSDYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L A+     + ++ GPEGG   EE   L    F+ P SLGPRILR++TA + A+
Sbjct: 180 ANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|229086882|ref|ZP_04219041.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44]
 gi|228696392|gb|EEL49218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-44]
          Length = 249

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+         +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAMCTIDEITSEFV 59

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  DSTIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R++     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPDVHAPASFKQLLAMSSDYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  + H   + I+ GPEGG   +E   L    F+ P SLGPRILR++TA + A+
Sbjct: 180 ANFAKALTTLEHGQKLLIVFGPEGGLSEDEISALREYKFL-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|15677755|ref|NP_274919.1| hypothetical protein NMB1925 [Neisseria meningitidis MC58]
 gi|7227182|gb|AAF42254.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254670885|emb|CBA07409.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|316985547|gb|EFV64494.1| RNA methyltransferase family protein [Neisseria meningitidis
           H44/76]
 gi|325133384|gb|EGC56048.1| hypothetical protein TIGR00046 [Neisseria meningitidis M13399]
 gi|325139579|gb|EGC62119.1| hypothetical protein TIGR00046 [Neisseria meningitidis CU385]
 gi|325143638|gb|EGC65957.1| hypothetical protein TIGR00046 [Neisseria meningitidis M01-240013]
 gi|325200977|gb|ADY96432.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           H44/76]
 gi|325206833|gb|ADZ02286.1| conserved hypothetical protein TIGR00046 [Neisseria meningitidis
           M04-240196]
          Length = 241

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|23464129|gb|AAN33944.1| conserved hypothetical protein TIGR00046 [Brucella suis 1330]
          Length = 242

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 145/249 (58%), Gaps = 22/249 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R +V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRPYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  +LDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGQLDYMMQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMA 235
             P+  +LIGPEGG+  EE++ LH LPFVT + LGPRILR                    
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA---------- 229

Query: 236 LVQAICGDW 244
           LVQA+ GDW
Sbjct: 230 LVQAVLGDW 238


>gi|190575526|ref|YP_001973371.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas
           maltophilia K279a]
 gi|190013448|emb|CAQ47083.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 245

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R  +D  L          +  ++L  V+R++EGD  +LFNG   ++ + ++  GK  
Sbjct: 2   RVTRCPIDLALHSGQTVTLPEETANHLVRVMRLREGDTCVLFNGDGHDYSATLTAAGKRE 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           ++ +++  Q+        +  +    +  ++D ++QK+ E+G+ AI PV    T+     
Sbjct: 62  VQVRIDAVQAVDNESPLAITLLQGIARGEKMDLILQKATELGVSAIVPVNAERTEVKLDV 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +        SA  Q     +P +  P +L         +   +  D      + 
Sbjct: 122 ARAEKRVAHWNNVVTSACGQSGRARIPQVGSPVSLAQAATTLPADTLRLTLD--PHGAHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A A    + I IGPEGG+   +++ L +  F   L LGPRILR++TA +AA+A +
Sbjct: 180 LSTLDA-APTGGIVIAIGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           QA  GD
Sbjct: 238 QARLGD 243


>gi|21243796|ref|NP_643378.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109388|gb|AAM37914.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R +VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L +     ++ + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LGTLASSIQ-QHIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|157693044|ref|YP_001487506.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus pumilus
           SAFR-032]
 gi|157681802|gb|ABV62946.1| hypothetical protein BPUM_2277 [Bacillus pumilus SAFR-032]
          Length = 256

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F+D     +  K      G+  H+L++V+RMK G  IL       E LSKI  + K
Sbjct: 1   MQRYFIDLTKEEVIAKGAIVIKGEDVHHLSNVMRMKAGQEILCLTTDGFEALSKIDTITK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
                      +Q ++  V+   +    K ++L+ +IQK  E+G  A  P     +    
Sbjct: 61  EEVLCHLEGWTNQDRELPVRVTIASGLPKGDKLELIIQKGTELGASAFIPFQAARSITKL 120

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             + +H   DR       AAEQ     +P +YP +T + L +      + V A E    E
Sbjct: 121 DQKKSHKKRDRWEKIAKEAAEQSYRNIIPHVYPVSTFKELTQLASEFDKCVVAYEESSKE 180

Query: 176 NSLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
               +    L  +     + ++ GPEGG   +E E L +L  V    LGPRILR++TA +
Sbjct: 181 GEQSRFQTVLQQMKGGQTLLVVFGPEGGLAEKEIEALETLGAV-ICGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 240 YALSAISY 247


>gi|228993054|ref|ZP_04152977.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442]
 gi|228766702|gb|EEM15342.1| RNA methyltransferase, RsmE [Bacillus pseudomycoides DSM 12442]
          Length = 249

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+         +  GD  H++  V+RM  GD+I          +  I+ +     
Sbjct: 1   MQRYFVEEKYVNDASIRIVGDDVHHIVRVMRMSVGDHIYCCV-NGKTAMCTIAEITSEFV 59

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  DSAIVEWGEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R++     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLKKIVKEAAEQSHRSEIPAVHAPASFKQLLAMSSDYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L A+     + ++ GPEGG   EE   L    F+ P SLGPRILR++TA + A+
Sbjct: 180 ANFAKALTALERGQKLLVVFGPEGGLSEEEISALREHKFI-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|326386680|ref|ZP_08208302.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208995|gb|EGD59790.1| 16S ribosomal RNA methyltransferase RsmE [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 255

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 4/238 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV  PL         G Q HYL  V+R+  GD ++L +   GEW ++   VGK  + 
Sbjct: 17  PRLFVTGPLGDGVSVTIEGGQAHYLVRVMRIAPGDVVVLCDDATGEWATQAGPVGKRDLV 76

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                + R +    D     + +K +R D +++K+ E+G+  +RP++ R       N +R
Sbjct: 77  LTCTTRLREREDVPDFWLCPALLKKDRFDLVLEKASELGVARLRPMLARRCVADKLNPER 136

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R   I AAEQC    LP    P  +E LL +W  +  + FADE  G+  +       AH
Sbjct: 137 ARATLIEAAEQCARTALPQCDAPVRIEALLADWPQDRTLFFADENGGAPAAAS---FAAH 193

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                +L+GPEGG+   E+  + + P   P++LGPRILR +TAA+AA +L   +CGDW
Sbjct: 194 PGPAGLLVGPEGGFDEAERAAIRAHPAAVPITLGPRILRGETAAIAATSLWMGLCGDW 251


>gi|291484991|dbj|BAI86066.1| hypothetical protein BSNT_03788 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 256

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD-FPLCIKTQ--GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     I+       +G+  H++ +V+RM EGD I+  +    E   ++  V K
Sbjct: 1   MQRYFIELTKQQIEEAPAFSITGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60

Query: 64  SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                  +E+ ++++     V       K ++L+++IQK  E+G  A  P     +    
Sbjct: 61  DKVSCLVIEWTNKNRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    + + LL+      + V A E    +
Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 180

Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             +    AI        ++ I+ GPEGG    E E L     VT   LGPRILR++TA +
Sbjct: 181 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 240 YALSAISY 247


>gi|261379381|ref|ZP_05983954.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703]
 gi|284797829|gb|EFC53176.1| 16S rRNA methyltransferase RsmE [Neisseria subflava NJ9703]
          Length = 241

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKS 64
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG    + +  ++    ++
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  ++       ++  + +     R+D+ +QKSVE+G+  IRPVI+         +
Sbjct: 60  SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P TT    L+        +       S N  
Sbjct: 120 RAEKRVARWQEIVVSACEQSGRNIVPKVLPLTTYAQALQQLPQETTKLLM-----SLNRA 174

Query: 179 EKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +KL  +      V  ++GPEGG+  +E++      F   ++LG R+LR++TA++AA+A +
Sbjct: 175 QKLSDVQPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIAAM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|258516359|ref|YP_003192581.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780064|gb|ACV63958.1| protein of unknown function DUF558 [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 257

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 12/248 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R++V        Q   +G +  ++  VLR+  GD + + +G+ G + ++I+   K   
Sbjct: 1   MTRVYVPPTRIKGRQACITGTEMEHVNRVLRLAAGDEVTIIDGEGGVFSARITGKNKEKV 60

Query: 67  FKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           F                +  +    K++++D ++QK  E+G+  + P+           +
Sbjct: 61  FCEITAEGLPDNEPPVKITLVQGLPKSDKMDLIVQKGTELGLSTLIPLQCERAIVRLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175
                 +R +   + AA+QC     P +    + + +L++       +   E     G +
Sbjct: 121 KAAQRQERWQRIAMEAAKQCKRGKHPSVERAMSWQEVLESLPEKALCLLPWEEETARGLK 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +  + L A      + I IGPEGG+   E         V P+SLGPRILR++TA +A ++
Sbjct: 181 SLRDNLEAKVPPFEIYIFIGPEGGFTRSEAAQARQYG-VIPVSLGPRILRTETAGIAVLS 239

Query: 236 LVQAICGD 243
           ++    GD
Sbjct: 240 IIMYEFGD 247


>gi|254281685|ref|ZP_04956653.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219677888|gb|EED34237.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 242

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 18/247 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R+F D PL    +     +   ++  VLR+  G  + +FNG   ++ + I+ V K  
Sbjct: 2   RTPRIFADLPLAQGAEFTLPDNASLHIGRVLRLDSGQPLTVFNGDGEDYHATITTVTKR- 60

Query: 66  RFKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
              +E     +   T   +V+   +  K +R D+ +QK+ E+G+  I P+++   +    
Sbjct: 61  SVSIEVHSVATNGTTSPLEVELGLALSKGDRFDWAVQKATELGVAHITPLVSERVEVRLN 120

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                          ISA EQC   TL  +  PT L   L+  +   ++V    +  +  
Sbjct: 121 PQREEKKRTHWHNIVISACEQCGRSTLAGVSSPTQLRPWLERVEAPLKLVLDHRSATALP 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                        VA+LIGPEGG    E E   +  F   L LGPR+LR++TA V A+++
Sbjct: 181 E-------EKPDRVALLIGPEGGLTESELELAEASGF-QRLQLGPRVLRTETAPVVALSV 232

Query: 237 VQAICGD 243
           +    GD
Sbjct: 233 LGNRWGD 239


>gi|331015976|gb|EGH96032.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 275

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 17/230 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++  +   Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VRVQLTERFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   ISA EQC    +P I+PP  L   +K  + + ++V           
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHPPMPLADWIKLTEADLKLVLHP-------V 173

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            E L + A   ++A LIGPEGG +  E +   +  F     LGPR+LR++
Sbjct: 174 AEPLTSHAKPASLAFLIGPEGGLNDAEVDQAQNAGF-HAARLGPRVLRTE 222


>gi|229174986|ref|ZP_04302505.1| RNA methyltransferase, RsmE [Bacillus cereus MM3]
 gi|228608447|gb|EEK65750.1| RNA methyltransferase, RsmE [Bacillus cereus MM3]
          Length = 249

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAICSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL   +     + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSNEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE  TL    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|225568735|ref|ZP_03777760.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM
           15053]
 gi|225162234|gb|EEG74853.1| hypothetical protein CLOHYLEM_04814 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64
           ++  FV             G   +++ +VLRMK G+ + + +G + ++L  +     G++
Sbjct: 1   MQHFFVTPFQVGNGYIFIEGQDVNHMKNVLRMKPGEELTVSDGDNRKFLCAVDRYEEGQA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +      +       S +       K ++++ ++QK+VE+G+  + PV+TR +      +
Sbjct: 61  VLKICREEMSDTELASRICLFQGLPKQDKMELIVQKAVELGVSEVVPVMTRRSVVRLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177
                ++R ++   SA++Q     +P + P       L+       ++   E   G + +
Sbjct: 121 KAARKVERWQSIAGSASKQAGRGYIPKVAPVAGFGEALRQASAMDVLLIPYELAEGMQET 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              + +I    +V + IGPEGG+  EE E       V P++LG RILR++TA +  ++++
Sbjct: 181 KRVISSIVPGQSVGVFIGPEGGFEREEVELAVEAGAV-PITLGRRILRTETAGLTTLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFHL 243


>gi|229577456|ref|YP_001126527.2| 16S ribosomal RNA methyltransferase RsmE [Geobacillus
           thermodenitrificans NG80-2]
          Length = 258

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV            SGD  H+++ V+RMK GD I          + +I  +     
Sbjct: 1   MQRYFVSDRERQGENVVISGDDAHHISRVMRMKPGDAIACVFPDGRTAVCQIEQIANEQV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                Q + + ++  V+   +    K  + + +IQK  E+G     P +   +      +
Sbjct: 61  CARIVQWKEEGRELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175
                ++R +     AAEQ +   LP +  P +L+ L+   +     +FA E     G  
Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRH 180

Query: 176 NSLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            SL  L A +    ++  + GPEGG+  EE E L    F+ P SLGPRILR++TA +  +
Sbjct: 181 ASLPALLADLQPGSSLLAVFGPEGGFSREEAEQLKQSGFL-PCSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           A      
Sbjct: 240 AAASYEW 246


>gi|163745648|ref|ZP_02153008.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45]
 gi|161382466|gb|EDQ06875.1| hypothetical protein OIHEL45_08655 [Oceanibulbus indolifex HEL-45]
          Length = 219

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQY 84
            +Q HYL  V+R   G  +LLFNG+DGEWL++++  GK         Q+R      D+  
Sbjct: 3   REQAHYLFGVMRQALGAGVLLFNGRDGEWLAEVTEAGKRGGVLTCVEQTRPLQMPPDLWL 62

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLP 144
           +F+PIK  R D++++K+ EMG   I PV+T +T        R++ + + AAEQC    +P
Sbjct: 63  LFAPIKKTRTDFIVEKAAEMGASRIVPVMTEFTNAGRVQQTRLQAHAVEAAEQCGGTYVP 122

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +     L  LL  WD + QI+F DE    E+    L A A  P  AILIGPEGG+   E
Sbjct: 123 EVAEAEKLGRLLDRWDTSRQIMFCDEALAGESG--ALPADAQGP-WAILIGPEGGFSEAE 179

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +  LH       ++LGPRILR+DTAAVAAM + Q   GDW
Sbjct: 180 RMRLHGFDHAHAVTLGPRILRADTAAVAAMTMWQQALGDW 219


>gi|254519874|ref|ZP_05131930.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913623|gb|EEH98824.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 250

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F      I  + K  GD   +L  VLR+ EGD I+L N    E+L+ IS + K  +
Sbjct: 1   MHKFFTPKENFIDNEAKILGDDVKHLYKVLRLNEGDKIVLNNCDGEEFLASISTITKQEV 60

Query: 66  RFKVEYQSRSQTKQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
             ++E + +   + S   Y      K  ++D ++QK  E+G+    P +T       +  
Sbjct: 61  IVEIEEKLQINNESSVKIYLFQGLPKAQKMDLIVQKGTELGITEFIPTLTDRVDIKLKGD 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+    + AA+Q     +P +  P + +  L   ++   ++   E   +      
Sbjct: 121 FKKLDRLNRIALEAAKQSKRSIIPNVVDPISFDEALDKMNNLDMVIVPYENAENFGIKTL 180

Query: 181 LH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +        I  V IL+GPEGG+  +E   L        ++LG RILR++TA   A +L
Sbjct: 181 FNHTDLDRTKIKTVGILVGPEGGFEEDEINRLKENGAY-IVTLGSRILRTETAGFVATSL 239

Query: 237 VQAICGD 243
           VQ   GD
Sbjct: 240 VQYELGD 246


>gi|294627316|ref|ZP_06705902.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294667456|ref|ZP_06732673.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598398|gb|EFF42549.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292602789|gb|EFF46223.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R +VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARARVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L +      + + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LGTLASSIQ-QYIVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|254421059|ref|ZP_05034783.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas
           sp. BAL3]
 gi|196187236|gb|EDX82212.1| conserved hypothetical protein TIGR00046, putative [Brevundimonas
           sp. BAL3]
          Length = 298

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 48/288 (16%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
            + + RL V  PL        + DQ  YL  V+R+K GD +L+FNG+DGEW   ++ V  
Sbjct: 10  KADMIRLHVPSPLAAAAAVAPTLDQSRYLTQVMRLKVGDELLVFNGRDGEWRCTVAEVLK 69

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           K +  + E Q+R QT   D++ I + +K  R++ +++K+ E+G   +R V+T+ T     
Sbjct: 70  KGVILRAEEQARPQTYGPDLELIVAVVKKARVETIVEKAAELGARRVRLVLTKRTNADRI 129

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            +DR+      AAEQ   L +P +  P  L+ LL  W+   +++F DET G   ++  L 
Sbjct: 130 RLDRLDAIAEEAAEQTGRLDVPPVDDPVKLDALLDEWEAGRRLMFCDET-GGAPAMRALA 188

Query: 183 AIAH----------------------------------------------IPNVAILIGP 196
             +                                                P  +ILIGP
Sbjct: 189 PYSPSPLRGGALARSDDGVGRAEQPDALPGPAHPASAAPSPPSPDGEGEGQPKWSILIGP 248

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG+  EE E L SLPF T +SLGPRILR+DTAA+AAM L QA  GDW
Sbjct: 249 EGGFSPEEGERLRSLPFTTAVSLGPRILRADTAAIAAMTLWQAAVGDW 296


>gi|309379533|emb|CBX21899.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 241

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|308069954|ref|YP_003871559.1| hypothetical protein PPE_03203 [Paenibacillus polymyxa E681]
 gi|305859233|gb|ADM71021.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 254

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 15/250 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+     ++     +G+   ++A V+R + GD I++ +G   E L  +  + +   
Sbjct: 1   MQRYFIPAEQFLEDHVIVAGEDARHIAKVMRGRSGDKIIVSDGVSREALVALDTIEQDHV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                +    T +  VQ   +    K ++++ ++QK  E+G     P ++  T      +
Sbjct: 61  TATIIEPLKMTSEPYVQVTIAQSLPKGDKMETVMQKCTEIGATGFVPFLSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P I  P T + LL ++     I +  E    +   
Sbjct: 121 KEGKRLERWRKIVKEAAEQSHRNRIPEISAPMTWKELLASFAGYDLICYCYEKEQGKQLR 180

Query: 179 EKLHAIAHI------PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + +  +A        P V +++GPEGG+   E              LG RILR++TA +A
Sbjct: 181 DVIQPLAEQWASTDMPRVLLVVGPEGGFTEAESLEAEQAG-AQSTGLGRRILRAETAGMA 239

Query: 233 AMALVQAICG 242
           A+A +    G
Sbjct: 240 ALACILYETG 249


>gi|150015721|ref|YP_001307975.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902186|gb|ABR33019.1| protein of unknown function DUF558 [Clostridium beijerinckii NCIMB
           8052]
          Length = 255

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F +     +T+GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  + KS  
Sbjct: 1   MHKFFTEPHNISETEGKILGDDVKHIYKVLRLSEGEEVVLNNCEGIEYLGEIETITKSEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
               ++    +   +  V       K  ++D ++QK  E+G+    PV T       +  
Sbjct: 61  IVKIIKRLDINNESKVKVHLFQGLPKGQKMDLIVQKGTELGVSEFIPVTTARVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              +DR+    + A +Q     +P +         +        I+   E     G +  
Sbjct: 121 FKKLDRLNRIALEACKQSKRSVIPQVKEVIDFNEAINELKKMDLIIVPYENAEDFGIKTL 180

Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           + KL      +  I NV ILIGPEGG+   E + L        ++LG RILR++TA   A
Sbjct: 181 VRKLERDSVDLDTINNVGILIGPEGGFEESEIDDLKEQGAY-IVTLGNRILRTETAGFTA 239

Query: 234 MALVQAICGD 243
            AL+Q   GD
Sbjct: 240 TALIQYELGD 249


>gi|325135519|gb|EGC58137.1| hypothetical protein TIGR00046 [Neisseria meningitidis M0579]
          Length = 241

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R  +   L +        +   +L +VLR++  +NI LFNGK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFNGKGKAHAARLTVLEKRRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  ++       ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  GAEILHEETADAESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|50085384|ref|YP_046894.1| hypothetical protein ACIAD2284 [Acinetobacter sp. ADP1]
 gi|49531360|emb|CAG69072.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 243

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 16/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L + T    +   +H+   VLR +  D  + FNG+ GE+   +  + K   
Sbjct: 1   MNRFYIEADLSVNTDTLLTESVFHHWVRVLRAQVNDCAIFFNGQGGEYQVTLQEINKKNA 60

Query: 67  FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
                Q     +T            K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  TVSIDQFNPVDRTPAFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                +D  ++  I+A EQC +  +P I PP +L   +      N ++V A E    +N 
Sbjct: 121 RDQKKIDHWQSIAIAACEQCGMNRVPEILPPVSLNEWINTATLPNTKLVLAPEKEQ-QNV 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+   +      +A+LIGPEGG    E    ++  F+    +G R+LR++TA V A++++
Sbjct: 180 LKNAQS-----ELALLIGPEGGLSENEIIAANNKGFIN-WCIGERVLRTETAPVVALSIL 233

Query: 238 QAIC 241
               
Sbjct: 234 NYRF 237


>gi|87121181|ref|ZP_01077072.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121]
 gi|86163673|gb|EAQ64947.1| hypothetical protein MED121_11304 [Marinomonas sp. MED121]
          Length = 244

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++VD PL   +        + ++  VLR+K   +++LFNG+ G++ +K+  V K  
Sbjct: 2   RIPRIYVDLPLQESSVFDLPQASFQHVCKVLRLKNDYSLILFNGQGGQYQAKLINVEKRS 61

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                + YQ+        V    +  +  R+DY IQK+VE G+  I+P+ +         
Sbjct: 62  AQVEVLNYQALENESPIKVTLGQTLSRGERMDYAIQKAVEAGVHRIQPLFSERCEVKLNT 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   +   ISAAEQ     +P +  P  L     N     +I     +    + 
Sbjct: 122 ERLDKKIQHWQQIAISAAEQSGRGHVPEVLSPINLLDWTSNCKDMLKITMHHHSAKPISE 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + +         V++LIGPEGG    E E      F  P++LG R+LR++TA V  +  +
Sbjct: 182 MSE----PEDKAVSVLIGPEGGLTESEVEASIQHGF-QPVALGSRVLRTETAPVVILTCI 236

Query: 238 QAICGD 243
             + GD
Sbjct: 237 NLLWGD 242


>gi|78048759|ref|YP_364934.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325925762|ref|ZP_08187135.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118]
 gi|78037189|emb|CAJ24934.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543819|gb|EGD15229.1| hypothetical protein TIGR00046 [Xanthomonas perforans 91-118]
          Length = 244

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     LP +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVAVPQGLQDAAQASDAHALRLTLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L +     +V + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LGTLASSIQ-QHVVVAIGPEGGWSPRDRALLAEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|58426003|gb|AAW75040.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 267

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 25  RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 84

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 85  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 144

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +      
Sbjct: 145 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 204

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L    A +   ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A 
Sbjct: 205 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 259

Query: 237 VQAICGD 243
           +Q+  GD
Sbjct: 260 LQSRFGD 266


>gi|299134206|ref|ZP_07027399.1| protein of unknown function DUF558 [Afipia sp. 1NLS2]
 gi|298590953|gb|EFI51155.1| protein of unknown function DUF558 [Afipia sp. 1NLS2]
          Length = 255

 Score =  247 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 93/229 (40%), Positives = 128/229 (55%), Gaps = 1/229 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+      RLFVD PL    +     +Q HYL +VLR+  GD+IL+FNG DGEW ++I  
Sbjct: 2   MQRDFKSPRLFVDAPLDAGGRVALEREQGHYLGNVLRLGTGDSILVFNGHDGEWRAQIEG 61

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
             +     +  Q+R Q    D+  +F+P+K  RLDYM+QK+VEMG   + P +T++TQ +
Sbjct: 62  RKRPEHLTLTEQTRPQETPCDLHLLFAPLKHARLDYMVQKAVEMGASLLAPTLTQFTQVS 121

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
             N +R+R   I AAEQC IL LP I  P  L   L   D    ++F DE     + L  
Sbjct: 122 RVNTERMRANAIEAAEQCGILNLPGINEPQPLARRLSERDGQRLLIFCDEAAPQCDPLAA 181

Query: 181 L-HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L         + +L+GPEGG+  EE+  L   P +  LSLGPRILR+DT
Sbjct: 182 LGMGAGKTKGLDVLVGPEGGFSEEERALLLRQPRLMRLSLGPRILRADT 230


>gi|119503497|ref|ZP_01625580.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium
           HTCC2080]
 gi|119460559|gb|EAW41651.1| hypothetical protein MGP2080_03120 [marine gamma proteobacterium
           HTCC2080]
          Length = 243

 Score =  247 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 16/243 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67
           RL+    L    + +   +  H+L  VLR + GDNI LF G   +W   +S V K S+  
Sbjct: 5   RLYTKQSLESGNKVELEAEVAHHLVKVLRARVGDNITLFTGTGLDWQCCVSEVHKRSVTL 64

Query: 68  KVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNT 120
            V   S   T+            K +R D+ IQK+ E G+  I P+ +            
Sbjct: 65  SVGGASNPNTESPLKTHLGLCLSKGDRFDWAIQKATEAGVATITPLYSDRVDVKLPADRI 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +   +    SA EQC    +P I+ PT L    +      ++               
Sbjct: 125 PKRIAHWQQIVRSACEQCGRAIVPQIFDPTPLSNWAQEQVSEAKLFLHHRESAMLP---- 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              +    ++A+L+GPEGG    ++       F+  + LGPR+LR++TA + A++++ A 
Sbjct: 181 ---VTRPTSIALLVGPEGGLSETDRGYASDAGFI-GVKLGPRVLRTETAPLVALSILGAR 236

Query: 241 CGD 243
            GD
Sbjct: 237 WGD 239


>gi|304403938|ref|ZP_07385600.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus
           YK9]
 gi|304346916|gb|EFM12748.1| protein of unknown function DUF558 [Paenibacillus curdlanolyticus
           YK9]
          Length = 254

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 15/250 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R FV      +T     GD  H+ + V+RM+ GD+ ++ +G   E ++K + +   + 
Sbjct: 1   MQRYFVPTSQFDETTVTLLGDDAHHASRVMRMRSGDSFIVSDGAGREAIAKATSIAADRI 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
               VE  +  +     +    S  K ++++ +IQK  E+G  A  P  +         +
Sbjct: 61  EADIVEKLAGDREPAWQITIAQSLPKGDKMELIIQKGTEIGAYAFVPFESERMIVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R       AAEQ     +P I  P + + L+ +      ++F  E  G   S 
Sbjct: 121 KEAKRLERWEKIAKEAAEQAHRSRIPAIAKPASWKQLVGSIGEYDLVLFCYEEEGRSGSG 180

Query: 179 EKLH------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             L       A      V +++GPEGG+   E         V  + LG RILR++TA + 
Sbjct: 181 SGLRDAVRPIADRSNARVLVVVGPEGGFTESEAADASGAGAV-VVGLGKRILRTETAGLV 239

Query: 233 AMALVQAICG 242
           A+  +    G
Sbjct: 240 ALTALLYESG 249


>gi|163942067|ref|YP_001646951.1| hypothetical protein BcerKBAB4_4162 [Bacillus weihenstephanensis
           KBAB4]
 gi|229135136|ref|ZP_04263937.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196]
 gi|163864264|gb|ABY45323.1| protein of unknown function DUF558 [Bacillus weihenstephanensis
           KBAB4]
 gi|228648313|gb|EEL04347.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST196]
          Length = 249

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEW-LSKISY--VG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK  E  +++I+   V 
Sbjct: 1   MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P     +     
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175
            +     ++R+R     AAEQ     +P ++ P++ + LL         + A E    + 
Sbjct: 118 AKKADKKVERLRKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYDVCLVAYEEEAKQG 177

Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              N  + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + 
Sbjct: 178 EKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236

Query: 233 AMALVQAIC 241
           A++      
Sbjct: 237 ALSAASYHF 245


>gi|289667429|ref|ZP_06488504.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 244

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     +P +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A +   ++ + IGPEGG+   ++  L    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-ASSVQQHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|228923064|ref|ZP_04086356.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836562|gb|EEM81911.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 249

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTTIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|84623346|ref|YP_450718.1| hypothetical protein XOO_1689 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|229558004|ref|YP_200425.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84367286|dbj|BAE68444.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +      
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L    A +   ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A 
Sbjct: 182 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 236

Query: 237 VQAICGD 243
           +Q+  GD
Sbjct: 237 LQSRFGD 243


>gi|307730990|ref|YP_003908214.1| hypothetical protein BC1003_2971 [Burkholderia sp. CCGE1003]
 gi|307585525|gb|ADN58923.1| protein of unknown function DUF558 [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R FV   L      +   D   ++  VLR++ GD+I+LFNG+ GE+ +++  + +  I
Sbjct: 1   MPRFFVGTSLSPDGVLQLPDDVVRHVL-VLRLQVGDSIVLFNGEGGEYSAELVTIERRAI 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             KV E++         +         +++D++I+K+VE+G  +  P+ T  +      +
Sbjct: 60  TVKVREFRDIEVEPPYRLSLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCG 173
                         ++ EQC    LP + P   +   L            +I+ +     
Sbjct: 120 RALRRHTHWEGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRLPAADELRILLSPRAS- 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                  L   A    V +L+GPEGG+ + E+       F   + LGPR+LR++TA +A 
Sbjct: 179 --IQFSALPTTAPKGPVTVLVGPEGGFSAAEEAAAMDHGF-QAVGLGPRVLRTETAGIAV 235

Query: 234 MALVQAICGDW 244
           ++ + A+ G W
Sbjct: 236 LSALAAMWGGW 246


>gi|161869288|ref|YP_001598455.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
           053442]
 gi|161594841|gb|ABX72501.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S     R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|288939950|ref|YP_003442190.1| hypothetical protein Alvin_0191 [Allochromatium vinosum DSM 180]
 gi|288895322|gb|ADC61158.1| protein of unknown function DUF558 [Allochromatium vinosum DSM 180]
          Length = 248

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 11/247 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            L RL VD  L    +      Q  +   VLR++    ++LFNG   ++ + +   G+  
Sbjct: 2   RLTRLHVDLDLRPGAEIDLPSAQARHAVQVLRLERDAPLVLFNGDGHDYSACLVEPGRDR 61

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           +R  VE +   +   + D+       K  R+D+ IQK+VE+G+  I P+ TR  Q     
Sbjct: 62  VRVLVESRGDPELESRLDIHLALGISKGERMDFAIQKAVELGVTRITPLFTRRAQVRLDG 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++  +   ++A EQ     LP + P   LE  L+    +           +E +
Sbjct: 122 ARLDKRLEHWQGVVVAACEQSGRRRLPTLEPAGGLEAWLETAHGDGFAGGLLLDPLAERA 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A      + +LIGPEGG    E+E      F   + LGPRILR++TA +AA+A++
Sbjct: 182 LPALPA--PESGLTLLIGPEGGLDPREREAARRHGF-QGVRLGPRILRTETAPLAAIAVI 238

Query: 238 QAICGDW 244
           QA+ GD+
Sbjct: 239 QALWGDF 245


>gi|210610069|ref|ZP_03288248.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787]
 gi|210152680|gb|EEA83686.1| hypothetical protein CLONEX_00434 [Clostridium nexile DSM 1787]
          Length = 245

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV      +      G   +++ +VLRMK G+ + + +G + ++L +I  +     
Sbjct: 1   MHQFFVTPMQVKEDHIYIEGLDVNHIKNVLRMKVGEALKVSDGNNRKYLCEIESMTAQQV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE Q       S +       K+++++ ++QK+VE+G   I PV T+        +
Sbjct: 61  CVRIVEEQQVDTELPSKIYLFQGLPKSDKMELIVQKAVELGAYEIIPVATKRAVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177
                ++R R    S A+Q     +P +    + +  L        ++   E   G + +
Sbjct: 121 KALKKVERWRGIAESGAKQSGRNVIPKVTNVMSYKDALTYARGLDILLIPYELAEGMKET 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +  I    +V I IGPEGG+ ++E E   +      ++LG RILR++TA +  ++++
Sbjct: 181 KQVIEEIKRGQSVGIFIGPEGGFETQEVEDAIANG-ARAITLGKRILRTETAGLTTLSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|261393256|emb|CAX50882.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPENIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|241759555|ref|ZP_04757658.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114]
 gi|241320112|gb|EER56473.1| RNA methyltransferase, RsmE family [Neisseria flavescens SK114]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG    + +    + K   
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKAYPALPEVLEKRCA 59

Query: 67  FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                +  +       ++  + +     R+D+ +QKSVE+G+  IRPVI+         +
Sbjct: 60  SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P  T    L+        +       S N  
Sbjct: 120 RAEKRVARWQEIVVSACEQSGRNIVPKVLPLMTYAQALQQLPQETAKLLM-----SLNRA 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +KL  +      V  ++GPEGG+  +E++      F   ++LG R+LR++TA++AA+A +
Sbjct: 175 QKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIATM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|206969964|ref|ZP_03230918.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134]
 gi|228954597|ref|ZP_04116621.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071816|ref|ZP_04205030.1| RNA methyltransferase, RsmE [Bacillus cereus F65185]
 gi|229081573|ref|ZP_04214070.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2]
 gi|229180588|ref|ZP_04307930.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W]
 gi|229192522|ref|ZP_04319484.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876]
 gi|206735652|gb|EDZ52820.1| RNA methyltransferase, RsmE family [Bacillus cereus AH1134]
 gi|228590946|gb|EEK48803.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 10876]
 gi|228603012|gb|EEK60491.1| RNA methyltransferase, RsmE [Bacillus cereus 172560W]
 gi|228701729|gb|EEL54218.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-2]
 gi|228711295|gb|EEL63256.1| RNA methyltransferase, RsmE [Bacillus cereus F65185]
 gi|228805043|gb|EEM51638.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 249

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|167630502|ref|YP_001681001.1| hypothetical protein HM1_2440 [Heliobacterium modesticaldum Ice1]
 gi|167593242|gb|ABZ84990.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 254

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 111/254 (43%), Gaps = 17/254 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           + R   +       +     ++  +L+ VLR++ GD +L F+G+  E+ + ++ +   K+
Sbjct: 1   MYRFLFEPRNLTGARVCLDREESQHLSKVLRLRAGDAVLAFDGQGNEYEAIVAEINGDKA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
               +     S+     +  +    K  +++ +IQK+ E+G+  I PV+T  +       
Sbjct: 61  FLESLRPTGASREAPIRLWLLQGVAKGEKMELVIQKATELGVEKIFPVLTERSVVRFDAA 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 DR +     AA+QC    +P +  P     ++ +WD    ++   E    +   
Sbjct: 121 KAKERRDRWQKIAREAAKQCWRTVIPEVQLPAAWAEVITDWDMTMPLLIPWEKEQGKGLK 180

Query: 179 EKLHAIA--------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           + L  +             + + IGPEGG  + E          T +SLGPRILR++TA 
Sbjct: 181 QVLTVLKKEGLLHDSPAKVIGLAIGPEGGLTAAEVALARDRGART-VSLGPRILRTETAG 239

Query: 231 VAAMALVQAICGDW 244
           +AA+A +    GDW
Sbjct: 240 IAALAAIMYELGDW 253


>gi|298369579|ref|ZP_06980896.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282136|gb|EFI23624.1| RNA methyltransferase, RsmE family [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L          +   +L HVLR+K  + I+LFNG    + +++  + K   
Sbjct: 1   MPRFYLSEVLSAGRAVSLPDNVVRHL-HVLRLKPDEEIVLFNGDGKAYPARLGVLEKRRA 59

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  +        ++  + +     R+D+ +QKSVE+G+G IRPV++         +
Sbjct: 60  TAEILREEEADNESPLNITLVQAVSSGERMDFTLQKSVELGVGEIRPVLSERCVVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ    T+P + P  + +  L+        +       S  + 
Sbjct: 120 RAAKRVARWQEIVVSACEQSGRNTVPQVLPLVSYQEALRQMPSEKTKLLM-----SVRNA 174

Query: 179 EKLHAIAHIPNVAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +KL+ I    +  I  +GPEGG+   E++      F   ++LGPR+LR++TA++AA+A +
Sbjct: 175 QKLNRITPSSDGLIFMVGPEGGWTESEEQQAFGAGF-QAVTLGPRVLRTETASLAAIAAM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|319639002|ref|ZP_07993760.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102]
 gi|317399906|gb|EFV80569.1| hypothetical protein HMPREF0604_01384 [Neisseria mucosa C102]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS--KISYVGKS 64
           + R +VDF L   +  +   +   +L +VLR+K  + I+LFNG    + +  ++    ++
Sbjct: 1   MPRFYVDFALSPDSVVELPDNVVRHL-NVLRVKNTEEIVLFNGNGKSYPALPEVLEKRRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  ++       ++  + +     R+D+ +QKSVE+G+  IRPVI+         +
Sbjct: 60  SVRILREEATDNESPLNITLVQAVSAAERMDFTLQKSVELGVAEIRPVISERCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P TT    L+        +       S N  
Sbjct: 120 RAEKRVARWQEIVVSACEQSGRNIVPRVLPLTTYAQALRQLPQETAKLLM-----SLNRA 174

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +KL  +      V  ++GPEGG+  +E++      F   ++LG R+LR++TA++AA+A +
Sbjct: 175 QKLSDVRPQSGKVVFMVGPEGGWTEKEEQQAFDAGF-QSVTLGKRVLRTETASLAAIAAM 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTLWGDF 240


>gi|332975772|gb|EGK12653.1| RsmE family RNA methyltransferase [Desmospora sp. 8437]
          Length = 248

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 116/244 (47%), Gaps = 11/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++R F+D       +    GD  H++ +V+RM+ GD ++  + +  ++L+++  V +   
Sbjct: 1   MQRYFIDSTQIGPDRITVRGDDVHHIKNVMRMRAGDRLICCDSRGTDYLAELETVSEGEA 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R ++  +  S+   +  V    S  K ++ ++++QK  E+G  +  P I+  T      +
Sbjct: 61  RCRILERMPSRGEPRFRVAVAASLTKGDKWEWVLQKGTELGAASFLPFISARTVVKWDGK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R +     AAEQ     +P +        LL+ +    +++FA E  G   SL
Sbjct: 121 KADKKKERWQRIAKEAAEQSHRGQIPHVETVMDWRSLLERFPAFDRVLFAYEKGG--RSL 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             +        + ++IGPEGG+   EK    +   V+ + LGPRILR++TA +A ++ + 
Sbjct: 179 GAVLREVTGERMLVVIGPEGGFTETEKSEAVAAGAVS-IHLGPRILRAETAPLALLSCIH 237

Query: 239 AICG 242
              G
Sbjct: 238 YSYG 241


>gi|308390021|gb|ADO32341.1| hypothetical protein NMBB_2198 [Neisseria meningitidis alpha710]
 gi|325129462|gb|EGC52292.1| hypothetical protein TIGR00046 [Neisseria meningitidis OX99.30304]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAARLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S     R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I      +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAPLAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|294787701|ref|ZP_06752945.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC
           29453]
 gi|294483994|gb|EFG31677.1| RNA methyltransferase, RsmE family [Simonsiella muelleri ATCC
           29453]
          Length = 239

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 16/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R +    L   ++     +   ++ HVLR++ G+ I LFNG    + +++  + K   
Sbjct: 1   MPRFYFPVNLIPDSEWTLPDNLVRHI-HVLRLRVGEQITLFNGDGAAYSAQLLQLEKRHA 59

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +V ++    T+    ++ + +     R+D+ IQKSVE+G+ AI+PV++  +      +
Sbjct: 60  TCRVLFRQPENTESPLSIKLVQAISSGERMDFTIQKSVELGVVAIQPVMSERSVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   ISA EQC   T+P I P  + E  L+       I+       S    
Sbjct: 120 RADKRVQRWQEIAISACEQCGRNTIPDILPIVSFEQYLRQKSDELHILM------SLRQA 173

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L  +     V ++IG EGG+   E+    S      + LG R+LR++TA++AA+A +Q
Sbjct: 174 RSLKDLPTPTRVTLMIGAEGGWTQAEENAAFSAN-CQAVVLGKRVLRTETASLAAIAAMQ 232

Query: 239 AICGDW 244
            + GD+
Sbjct: 233 TLWGDF 238


>gi|229129591|ref|ZP_04258560.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4]
 gi|229152513|ref|ZP_04280704.1| RNA methyltransferase, RsmE [Bacillus cereus m1550]
 gi|228630944|gb|EEK87582.1| RNA methyltransferase, RsmE [Bacillus cereus m1550]
 gi|228653859|gb|EEL09728.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-Cer4]
          Length = 249

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDTCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|297529333|ref|YP_003670608.1| hypothetical protein GC56T3_0989 [Geobacillus sp. C56-T3]
 gi|297252585|gb|ADI26031.1| protein of unknown function DUF558 [Geobacillus sp. C56-T3]
          Length = 258

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV            SGD  H++A V+RMK GD I+         + +I  +     
Sbjct: 1   MQRYFVSGQAQQGGIVAISGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHV 60

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
                Q + +       +       K  + + +IQK  E+G     P      V+    +
Sbjct: 61  QVRIVQWKEERSELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +     AAEQ +   +P +  P +   LL         +FA E        
Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTVVPDVRAPLSFVELLAFGQTVDVRLFAYEKEARNARH 180

Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             L A    +     +  + GPEGG+  EE E L    F +P SLGPRILR++TA +  +
Sbjct: 181 AALPALLSRLRPGGALLAVFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYEW 246


>gi|229031960|ref|ZP_04187946.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271]
 gi|228729350|gb|EEL80341.1| RNA methyltransferase, RsmE [Bacillus cereus AH1271]
          Length = 249

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE  TL    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITTLREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|253997349|ref|YP_003049413.1| hypothetical protein Mmol_1984 [Methylotenera mobilis JLW8]
 gi|253984028|gb|ACT48886.1| protein of unknown function DUF558 [Methylotenera mobilis JLW8]
          Length = 244

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 112/246 (45%), Gaps = 16/246 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R +   PL +      S     +    LR+  GD+ +LFNG    +   ++ + K+    
Sbjct: 5   RFYTHSPLALGASVLLSESAAAHATRALRLSVGDDAILFNGDGVNYNCTLTEIKKNSVTA 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           +     +       ++  + +    +R+D+ IQK+VE+G+ +I+P+ ++ +      +  
Sbjct: 65  MVNGATAVHNESPLNITLVQAISSGDRMDFTIQKAVELGVKSIQPISSKRSVVKLSGERA 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSENSL 178
               +  +   ISA EQ     +P +  P +LE  L N     N +I+         N +
Sbjct: 125 EKRTEHWQNIAISACEQSGRAYVPKVLTPISLEQWLGNNPAANNTRILLNPIGAVRLNEI 184

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            K         + +LIG EGG   EE +   +  F + + LGPRILR++TAA+ A+A +Q
Sbjct: 185 AK-----PTGEIQLLIGAEGGLSQEEIDLATAHNFQSIV-LGPRILRTETAALTAIAAMQ 238

Query: 239 AICGDW 244
              GD+
Sbjct: 239 LAWGDF 244


>gi|218233104|ref|YP_002369120.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus B4264]
 gi|228960579|ref|ZP_04122227.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229051300|ref|ZP_04194818.1| RNA methyltransferase, RsmE [Bacillus cereus AH676]
 gi|229111784|ref|ZP_04241331.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15]
 gi|229148158|ref|ZP_04276464.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24]
 gi|296504805|ref|YP_003666505.1| surface protein [Bacillus thuringiensis BMB171]
 gi|218161061|gb|ACK61053.1| RNA methyltransferase, RsmE family [Bacillus cereus B4264]
 gi|228635298|gb|EEK91822.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST24]
 gi|228671658|gb|EEL26955.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-15]
 gi|228722058|gb|EEL73485.1| RNA methyltransferase, RsmE [Bacillus cereus AH676]
 gi|228799092|gb|EEM46061.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325857|gb|ADH08785.1| surface protein [Bacillus thuringiensis BMB171]
          Length = 249

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDACLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|332285304|ref|YP_004417215.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7]
 gi|330429257|gb|AEC20591.1| hypothetical protein PT7_2051 [Pusillimonas sp. T7-7]
          Length = 247

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R +   PL   T  +      H+   VLR+K G +I+LF+G+ G++ + +   GK  
Sbjct: 5   AISRFYCATPLLPNTSIELPAALAHHAVRVLRLKTGSDIILFDGQGGQYTATLEITGKQA 64

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++  Y+         +  +      +++D++++K+VE+G   I P+  + +      +
Sbjct: 65  HARLGGYEPVEAELTGHITLVQGIPSGDKMDWVVEKAVELGASRIVPLAAQRSVLQLSGE 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENS 177
                +D  R  + +A+EQC    +  +  P TL+  +   D +   I+F       + +
Sbjct: 125 RLRKRLDHWRRISQAASEQCGRNRIMEVASPLTLQQYIAASDADPASILFCHPGSSRKLA 184

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L A     ++ +++GPEGG+  EE   +     +TP+  G R+LR++TA +A +A V
Sbjct: 185 QAALEA---GNSLTLVVGPEGGWSDEELALMAKHQ-LTPVGFGARVLRTETAGLALIAAV 240

Query: 238 QAICG 242
             + G
Sbjct: 241 STLRG 245


>gi|158320271|ref|YP_001512778.1| hypothetical protein Clos_1236 [Alkaliphilus oremlandii OhILAs]
 gi|158140470|gb|ABW18782.1| protein of unknown function DUF558 [Alkaliphilus oremlandii OhILAs]
          Length = 256

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 17/253 (6%)

Query: 7   LKRLFV--DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FV  +       +     +   +++ VLR+KE D + + +G+  E++  I+ + K+
Sbjct: 1   MHRFFVMPNQVNLTSGEIVIHDEDVKHISKVLRLKEKDIVEICDGESKEYICSIASIHKN 60

Query: 65  IRFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                  + R  +Q    +V       K  ++D +IQK+ E+G+  I PV+   T     
Sbjct: 61  EVVLSIEEERKSTQEASVEVVLYQGVPKGAKMDLIIQKTTELGIKEIIPVMMERTVVQFD 120

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172
             ++    ++R +     AA+Q     +P I+ P + +  +++   N   +   E     
Sbjct: 121 SPKDEVKKVERWQKIAEEAAKQSKRGMIPKIHLPMSFKDAIEDSRKNALNIMPYENEENR 180

Query: 173 GSENSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           G +N ++ L     A I  + + IGPEGG+   E         + P++LGPRILR++TA 
Sbjct: 181 GFKNIIKNLSKEDQASIKKIGVWIGPEGGFEESEVVKAIENG-IHPVTLGPRILRTETAG 239

Query: 231 VAAMALVQAICGD 243
              ++LV    GD
Sbjct: 240 FTMLSLVMYELGD 252


>gi|229013531|ref|ZP_04170665.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048]
 gi|228747768|gb|EEL97637.1| RNA methyltransferase, RsmE [Bacillus mycoides DSM 2048]
          Length = 249

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEW-LSKISY--VG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK  E  +++I+   V 
Sbjct: 1   MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P     +     
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175
            +     ++R++     AAEQ     +P ++ P++ + LL         + A E    + 
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYDVCLVAYEEEAKQG 177

Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              N  + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + 
Sbjct: 178 EKSNFAKSLATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236

Query: 233 AMALVQAIC 241
           A++      
Sbjct: 237 ALSAASYHF 245


>gi|229062009|ref|ZP_04199335.1| RNA methyltransferase, RsmE [Bacillus cereus AH603]
 gi|229169059|ref|ZP_04296775.1| RNA methyltransferase, RsmE [Bacillus cereus AH621]
 gi|228614468|gb|EEK71577.1| RNA methyltransferase, RsmE [Bacillus cereus AH621]
 gi|228717318|gb|EEL68991.1| RNA methyltransferase, RsmE [Bacillus cereus AH603]
          Length = 249

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEW-LSKISY--VG 62
           ++R FV+     +T  +  GD  H++A V+RM  GD+I    NGK  E  +++I+   V 
Sbjct: 1   MQRYFVEEKYVNETSIRIMGDDVHHIARVMRMSAGDHIYCCVNGKTAECSIAEITSEFVD 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            +I   VE+   S      V       K ++L+ + QK  E+G  A  P     +     
Sbjct: 61  TTI---VEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWD 117

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175
            +     ++R++     AAEQ     +P ++ P++ + LL         + A E    + 
Sbjct: 118 AKKADKKVERLKKIVKEAAEQSHRSEIPEVHVPSSFKQLLSMSSEYDVCLVAYEEEAKQG 177

Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              N  + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + 
Sbjct: 178 EKSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLY 236

Query: 233 AMALVQAIC 241
           A++      
Sbjct: 237 ALSAASYHF 245


>gi|86139068|ref|ZP_01057639.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193]
 gi|85824299|gb|EAQ44503.1| hypothetical protein MED193_10953 [Roseobacter sp. MED193]
          Length = 259

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 127/257 (49%), Gaps = 30/257 (11%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQ 76
                    +Q HYL  V+R + G  + LFNG DGEW ++++  GK         QS++ 
Sbjct: 3   AGQSIPLEKEQAHYLFGVMRQRLGGAVALFNGFDGEWQAEVTEAGKRGGTLTCVAQSKTL 62

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
               D+  IF+PIK  R D++++K+ EMG   I PV T YT +     DR++ + + AAE
Sbjct: 63  QMPPDLWLIFAPIKKARTDFIVEKAAEMGAARILPVGTDYTNSERIRQDRLQAHAVEAAE 122

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC------------------------ 172
           QC    +P +     L  LL +W    Q++F DE                          
Sbjct: 123 QCGGTYVPEVCDLQKLSQLLDHWPDERQLMFCDEAEVGQRRFLEVARGSAGPEGGREAPA 182

Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
                G++ S  +      +   AILIGPEGG+  +E++ LH++     +SLGPRILR+D
Sbjct: 183 LGGGTGADRSASEPFGKLSLQPWAILIGPEGGFSDKERKRLHAMAQAHVVSLGPRILRAD 242

Query: 228 TAAVAAMALVQAICGDW 244
           TAAVAAM L Q   GDW
Sbjct: 243 TAAVAAMTLWQQTLGDW 259


>gi|323702403|ref|ZP_08114068.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532709|gb|EGB22583.1| protein of unknown function DUF558 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 246

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 9/244 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD           +G    +++ VLRM  GD + + +G+   + ++I+ + K   
Sbjct: 1   MARFFVDPQDIKGDTAIITGPDVKHISKVLRMGNGDRLTILDGRGLVFTAEITGMTKDEV 60

Query: 67  FKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                  +         V  +    K ++++ +IQK  E+G+  I P+    +      +
Sbjct: 61  TCHLLGPEVAPAEPNLKVTLVQGLPKGDKMETIIQKCTELGIYQIIPLAAARSVVRLDGK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R +   + AA+QC    +P +     L  ++     N   V A E    ++  
Sbjct: 121 KAAERQQRWQRVAMEAAKQCRRPVIPRVQKLCQLTEVISMIPTNALGVIAWEDEKQQSLR 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L  +     + I IGPEGG+  EE   L    +   ++LGPRILR++TA   A+ +V 
Sbjct: 181 QLLQGVTMPEEIYIFIGPEGGFDPEEVARLSQRGWPN-VTLGPRILRTETAGPTALTMVL 239

Query: 239 AICG 242
              G
Sbjct: 240 YHYG 243


>gi|228910148|ref|ZP_04073967.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200]
 gi|228849431|gb|EEM94266.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 200]
          Length = 249

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPDQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|311108286|ref|YP_003981139.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762975|gb|ADP18424.1| RNA methyltransferase family protein [Achromobacter xylosoxidans
           A8]
          Length = 243

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 106/230 (46%), Gaps = 10/230 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D PL    +        H+   VLR++ G+ + LFNG+ GE+ + +   GK+   
Sbjct: 4   PRFFCDIPLTAGARVALPDALAHHALRVLRLRAGEAVALFNGQGGEYPATLEVDGKAGFA 63

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
           ++ ++  R       +  +      +++D++++K+VE+G   + P+  + +         
Sbjct: 64  QLGQFLPREAELAGRITLVQGLPSGDKMDWVVEKAVELGAARVCPIAAQRSVLQLSGPRL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +   +    SA+EQC    L  +  P TL   L+      +++   E   S++    
Sbjct: 124 DKRVAHWQRIAQSASEQCGRNRLMAVDAPFTLADWLQQPADGLRLMCHPEA--SDDLAGA 181

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           L A+ ++  + +L+GPEGG+  +E         V  +  GPR+LR++TA 
Sbjct: 182 LRAVPNLQALTLLVGPEGGWSDKELAQAREAG-VQAVRFGPRVLRTETAG 230


>gi|331091342|ref|ZP_08340182.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404503|gb|EGG84047.1| hypothetical protein HMPREF9477_00825 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 245

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64
           +   FV        +    G   +++ +VLRMK+G+ + + +G + +++ +I      K 
Sbjct: 1   MHHFFVTPNQVSGEEIYIEGSDVNHICNVLRMKKGEKLQISDGNNKKYICRIEDMTAEKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
           +   VE +       S +       K++++++++QK+VE+G   I PV T+         
Sbjct: 61  LLQIVEEKLGDTELSSKIYLFQGLPKSDKMEWIVQKAVELGAYEIIPVSTKRAVVKLDAK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                ++R  +     A+Q     +P +    T    L   +  +  +V  +   G + +
Sbjct: 121 KAAKKVERWNSIAEGGAKQSGRTVIPKVREVMTYREALAYAETLDIVLVPYELAEGMDKT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E +  I    +V I IGPEGG+  EE E    +    P++LG RILR++TA +  ++++
Sbjct: 181 KEFIGQIEKGQSVGIFIGPEGGFEKEEVEQAMEMG-AEPITLGKRILRTETAGLTVLSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|319787981|ref|YP_004147456.1| hypothetical protein Psesu_2392 [Pseudoxanthomonas suwonensis 11-1]
 gi|317466493|gb|ADV28225.1| protein of unknown function DUF558 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 243

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V+ PL   +         ++L  VLR++EG++ +LFNG   ++ ++++ V K  
Sbjct: 2   RLTRCHVELPLQPGSTITLPEHAANHLVRVLRLREGESCVLFNGDGHDYAARLASVTKRE 61

Query: 66  R--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +   +        +  +    +  ++D ++QK+ E+G+ AI PV    T      
Sbjct: 62  VSAEVLSATAVDNESPLRIVLLQGIARGEKMDLILQKATELGVAAIVPVNGERTEVRLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   R+   SA EQ     +P + PP +LE        +   +  D     E+ 
Sbjct: 122 ERAQKRLAHWRSVVESACEQSGRARVPEVQPPASLETAAATLPGDALRLLLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  +   A    V + IGPEGG+   +++ L +  F + L LGPR+LR++TA +AA+A +
Sbjct: 180 LASMQPDAST--VVVAIGPEGGWSPRDRQALQAAGF-SGLRLGPRVLRTETAGLAAIAAL 236

Query: 238 QAICGD 243
           QA  GD
Sbjct: 237 QARFGD 242


>gi|166712896|ref|ZP_02244103.1| hypothetical protein Xoryp_15990 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 244

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL  + +   S +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCEQEVALSEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +      
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L    A +   ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A 
Sbjct: 182 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 236

Query: 237 VQAICGD 243
           +Q+  GD
Sbjct: 237 LQSRFGD 243


>gi|229198439|ref|ZP_04325143.1| RNA methyltransferase, RsmE [Bacillus cereus m1293]
 gi|228584942|gb|EEK43056.1| RNA methyltransferase, RsmE [Bacillus cereus m1293]
          Length = 249

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  HTAIVEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|217961801|ref|YP_002340371.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus AH187]
 gi|228987562|ref|ZP_04147680.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229141049|ref|ZP_04269591.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26]
 gi|217064535|gb|ACJ78785.1| RNA methyltransferase, RsmE family [Bacillus cereus AH187]
 gi|228642327|gb|EEK98616.1| RNA methyltransferase, RsmE [Bacillus cereus BDRD-ST26]
 gi|228772160|gb|EEM20608.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 249

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVETSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|304321780|ref|YP_003855423.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis
           HTCC2503]
 gi|303300682|gb|ADM10281.1| hypothetical protein PB2503_11169 [Parvularcula bermudensis
           HTCC2503]
          Length = 262

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/258 (34%), Positives = 132/258 (51%), Gaps = 24/258 (9%)

Query: 8   KRLFV--DFPL--CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            RLFV  D  L           G Q+HYL HVLR+ +   +LLF+G+ GEW + I+   K
Sbjct: 6   PRLFVGGDAALTLAPDRVIPIEGAQWHYLHHVLRLDQNAPVLLFDGRSGEWAAAITIASK 65

Query: 64  SI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120
                 VE Q+R  T  S +   F+P+K +  + +IQK  E+G+   RPV T  T     
Sbjct: 66  KHGVLTVERQTRPMTPPSPLTLYFAPLKKDPTELIIQKGTELGITDFRPVRTDRTIVPKA 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--------- 171
               DR+ +  + AAEQC+ L  P I+P  +L+ L+        +V+ DE          
Sbjct: 126 GLKDDRLASIAVEAAEQCERLDTPTIHPLISLQDLIAAPPSC--LVYCDEAGDDPSARWG 183

Query: 172 ------CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                  G+  +L            A+LIGPEGG+   E++TL +LP    +SLGPR+LR
Sbjct: 184 GPSGHGEGAAAALLTRQESLAGSPGALLIGPEGGFTPTERQTLRALPGTLAVSLGPRVLR 243

Query: 226 SDTAAVAAMALVQAICGD 243
           ++TAA+ A++L QA+ GD
Sbjct: 244 AETAALVAISLWQAVLGD 261


>gi|319651611|ref|ZP_08005738.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2]
 gi|317396678|gb|EFV77389.1| hypothetical protein HMPREF1013_02350 [Bacillus sp. 2_A_57_CT2]
          Length = 249

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F +     +      G+  H++  V+RMKEGD I+  +      L  I+ +     
Sbjct: 1   MQRYFTENA-VKENVFLIKGEDRHHIVKVMRMKEGDQIICVDQSQNSALCAIAEITDEHV 59

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
               V++   S    +++  +    K ++L+++IQK  E+G     P      V+    +
Sbjct: 60  AAEVVQWIEGSSELPANITIVSGLPKGDKLEWIIQKGTELGAHRFIPFTSARSVVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH--NCQIVFADETCGSEN 176
            +    +R +     AAEQ     +P ++ P  L+ LLK         I F +E    E+
Sbjct: 120 KSVKKAERWQKIAKEAAEQSHRTMVPEVFAPLDLKSLLKLSGDYSYKLIAFEEEAKQGED 179

Query: 177 SL--EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           S+  + L ++    ++ ++ GPEGG    E   L    FV    LGPRILR++TA +  +
Sbjct: 180 SVLYKTLTSMNKGQSLMVVFGPEGGLSDNEVSLLQEAGFV-ACGLGPRILRTETAPLYLL 238

Query: 235 ALVQAIC 241
           + V    
Sbjct: 239 SAVSYHF 245


>gi|296333298|ref|ZP_06875751.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675197|ref|YP_003866869.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149496|gb|EFG90392.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413441|gb|ADM38560.1| methylase of U1498 in 16S rRNA [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 256

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 103/248 (41%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++       +      +G+  H++ +V+RM EGD I+  +    E   ++  V K
Sbjct: 1   MQRYFIELTKQQMEEAPAFSVTGEDVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 60

Query: 64  SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                  VE+   ++     V       K ++L+++IQK  E+G  A  P     +    
Sbjct: 61  DNVSCLVVEWTDENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    + + LL+      + V A E    +
Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEVPQVMDVHSFQQLLQRMQDFDKCVVAYEESSKK 180

Query: 176 NSLEKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             +    A    +    ++ I+ GPEGG    E E L       P  LGPRILR++TA +
Sbjct: 181 GEISAFSAVVRRLPKGSSLLIVFGPEGGLTEAEVERLTEKD-SMPCGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 240 YALSAISY 247


>gi|300118699|ref|ZP_07056427.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1]
 gi|298723948|gb|EFI64662.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus SJ1]
          Length = 249

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSVGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      +       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|229157925|ref|ZP_04285998.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342]
 gi|228625533|gb|EEK82287.1| RNA methyltransferase, RsmE [Bacillus cereus ATCC 4342]
          Length = 249

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHTPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|42783438|ref|NP_980685.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus cereus ATCC
           10987]
 gi|42739367|gb|AAS43293.1| conserved hypothetical protein TIGR00046 [Bacillus cereus ATCC
           10987]
          Length = 249

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|261418481|ref|YP_003252163.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus sp. Y412MC61]
 gi|319767558|ref|YP_004133059.1| hypothetical protein GYMC52_2535 [Geobacillus sp. Y412MC52]
 gi|261374938|gb|ACX77681.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC61]
 gi|317112424|gb|ADU94916.1| protein of unknown function DUF558 [Geobacillus sp. Y412MC52]
          Length = 258

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV            SGD  H++A V+RMK GD I+         + +I  +     
Sbjct: 1   MQRYFVSGQAQQGGIVAISGDDAHHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHV 60

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
                Q + +       +       K  + + +IQK  E+G     P      V+    +
Sbjct: 61  QARIVQWKEERSELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +     AAEQ +   +P +  P +   LL         +FA E        
Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARH 180

Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             L A    +     +  + GPEGG+  EE E L    F +P SLGPRILR++TA +  +
Sbjct: 181 AALPALLSRLRPGGALLAVFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYEW 246


>gi|229019535|ref|ZP_04176352.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273]
 gi|229025777|ref|ZP_04182176.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272]
 gi|228735485|gb|EEL86081.1| RNA methyltransferase, RsmE [Bacillus cereus AH1272]
 gi|228741791|gb|EEL91974.1| RNA methyltransferase, RsmE [Bacillus cereus AH1273]
          Length = 249

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65
           ++R FV+     +T+ +  GD  H++  V+RM  GD+I    NGK  E    I+ +    
Sbjct: 1   MQRYFVEEKHVSETKIRIVGDDVHHIGRVMRMSAGDHIYCCVNGKTAE--CSIAEITSEF 58

Query: 66  R--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                VE+   S      V       K ++L+ + QK  E+G  A  P     +      
Sbjct: 59  VDTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDA 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-- 175
           +     ++R++     AAEQ     +P ++ P + + LL   +     + A E    +  
Sbjct: 119 KKADKKVERLKKIVKEAAEQSHRSEIPEVHAPASFKQLLAMSNEYDVCLVAYEEEAKQGE 178

Query: 176 --NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             N  + L  I     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A
Sbjct: 179 KSNFAKALATIKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYA 237

Query: 234 MALVQAIC 241
           ++      
Sbjct: 238 LSAASYHF 245


>gi|313905332|ref|ZP_07838698.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6]
 gi|313469802|gb|EFR65138.1| protein of unknown function DUF558 [Eubacterium cellulosolvens 6]
          Length = 246

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F      I  +   +GD  +++ +VLRMK+G+ IL+  G + E+   IS + +   
Sbjct: 1   MYRFFTGREQIIDGKVHITGDDVNHIRNVLRMKKGETILISCGDEWEYTCSISELSEDEI 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + Q   +  +S +       K+++++ +IQK+VE+G   + PV ++        +
Sbjct: 61  LADVTDAQKPGKELRSKIYLFQCLPKSDKMETVIQKAVELGAFEVVPVSSKRCIVKLDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                + R      SAA+Q   + +P ++        L+     + +++  +   G   +
Sbjct: 121 RGKQKVARWNGIAESAAKQAKRMIIPTVHEILGFREALEMAKEMDVKLIPYEMESGMSRT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E   +I    ++A+LIGPEGG+   E E      F + ++LG RILR++TA +  ++++
Sbjct: 181 REIFSSIEPGQSIAVLIGPEGGFDEAEVELAKEAGF-SSITLGRRILRTETAGMTTLSIL 239

Query: 238 QAIC 241
             + 
Sbjct: 240 MYLL 243


>gi|254521669|ref|ZP_05133724.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
 gi|219719260|gb|EED37785.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
          Length = 245

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R  +D  L          +  ++L  V+R++EGD  +LFNG   ++ + ++  GK  
Sbjct: 2   RVTRCPIDLALYSGQTLTLPEETANHLVRVMRLREGDACVLFNGDGHDYSATLTVAGKRE 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           ++ +++   R   +    +  +    +  ++D ++QK+ E+G+ AI PV    T+     
Sbjct: 62  VQVRIDAVERVDNESPLAITLLQGIARGEKMDLILQKATELGVAAIIPVNAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +        SA  Q     +P +  P +L         +   +  D      + 
Sbjct: 122 ARAEKRVAHWNNVVTSACGQSGRARIPQVGSPLSLAQAAATLPADTLRLTLD--PQGAHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L   A    + I IGPEGG+   +++ L +  F   L LGPRILR++TA +AA+A +
Sbjct: 180 LSTLDG-APTGGIVIAIGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           QA  GD
Sbjct: 238 QARLGD 243


>gi|229324846|ref|YP_496229.2| hypothetical protein Saro_0950 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 249

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 4/239 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV+ PL    +    G Q HYL  V+R+  GD ++L +   GEW+S+++ VGK  + 
Sbjct: 13  PRLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLV 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            ++E ++R + +  D     + +K    D +++K+ E+G   + PV+TR       N +R
Sbjct: 73  LEIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            RT  + AAEQC    LP +     L+ LL++W     + FADE  G   +        H
Sbjct: 133 ARTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGGIPAAAAF---SLH 189

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
               A+L+GPEGG+   E+  + + P    ++LGPRILR +TA++A M L   + GDW+
Sbjct: 190 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 248


>gi|218132834|ref|ZP_03461638.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991707|gb|EEC57711.1| hypothetical protein BACPEC_00695 [Bacteroides pectinophilus ATCC
           43243]
          Length = 245

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   F              G   ++L +VLR+K G+ I+L +G + ++   IS +     
Sbjct: 1   MYHFFARQENIYDDHILIDGADVNHLKNVLRIKCGEKIILSSGDNVDYYCTISEINDDSV 60

Query: 67  FKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
                E  +R +   S +       K ++++ +IQK+VE+G   I PV  +       ++
Sbjct: 61  IASIDETDTRGRELPSRIYLFQGLPKGDKMELIIQKAVELGAYGIIPVAMKRSVMKLDSK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177
                + R    + SAA+Q     +P ++   T     +       ++   E   G + +
Sbjct: 121 KAESKVKRWNAISESAAKQSKRSIIPAVHDVMTFAQAAEYAKTLDMVLLPYECADGMQAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +KL +I    ++ I IGPEGG+   E    H   F   ++LG RILR++TA +  ++++
Sbjct: 181 KDKLSSIKPGSSIGIFIGPEGGFDGSELTIAHDAGF-DVITLGRRILRTETAGMMLLSVL 239

Query: 238 QAICGD 243
                D
Sbjct: 240 MYQLED 245


>gi|328957459|ref|YP_004374845.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp.
           17-4]
 gi|328673783|gb|AEB29829.1| ribosomal RNA small subunit methyltransferase E [Carnobacterium sp.
           17-4]
          Length = 253

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 15/249 (6%)

Query: 7   LKRLFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F+   L          SGD +H++  V+RMK    + L       ++++I+ + + 
Sbjct: 1   MQRYFLKEDLTDYKNQTISISGDAFHHMVKVMRMKVDHRVYLVTKGQKAFIARINAIEEK 60

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
                 VE   R Q    +V       K ++LD +IQK  E+G  A  P      +    
Sbjct: 61  EVQLNWVEDDLRQQELPIEVTIASGLPKGDKLDLIIQKGTELGASAFIPFAGSFSITKWD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-- 174
           T+     ++R++     AAEQ     +P I   ++++ L++   +    + A E      
Sbjct: 121 TKKAVKKIERLQKIAQEAAEQSHRTKIPTIESLSSVKQLVEMKGNFDVCLVAYEESAKAG 180

Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             +N ++ L  +     + I+ GPEGG   EE +      F+ P +LGPRILR++TA + 
Sbjct: 181 EDQNFVKGLKQVPVGGKLLIIFGPEGGLSKEEVDAFLQNGFL-PCALGPRILRTETAPLY 239

Query: 233 AMALVQAIC 241
           A+A      
Sbjct: 240 ALAATSYHF 248


>gi|218767503|ref|YP_002342015.1| 16S ribosomal RNA methyltransferase RsmE [Neisseria meningitidis
           Z2491]
 gi|121051511|emb|CAM07805.1| hypothetical protein NMA0528 [Neisseria meningitidis Z2491]
 gi|319409765|emb|CBY90071.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F T ++LG RILR++T A+AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFDAGFQT-VTLGKRILRTETVALAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|324328215|gb|ADY23475.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 249

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  HTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSHEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|158521743|ref|YP_001529613.1| hypothetical protein Dole_1732 [Desulfococcus oleovorans Hxd3]
 gi|158510569|gb|ABW67536.1| protein of unknown function DUF558 [Desulfococcus oleovorans Hxd3]
          Length = 245

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D           +G   +++ +VLRMK GD I LFNG   E+   I  V  S  
Sbjct: 1   MRRFFIDAAAAAGAICPITGPDANHIKNVLRMKPGDAIWLFNGAGMEFKGVIHSVD-SEA 59

Query: 67  FKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             VE     S +      +    + +K  ++D +++++ E+G+    PV T+ T      
Sbjct: 60  VTVEITGAFSCATESPIRLTLAQAFLKDKKMDALVRQATELGVTRWIPVFTQRTIPRPDA 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
           +     M+R +     + +QC    LP I PP   E LL   D  + +I+FAD      N
Sbjct: 120 RRVSSRMERWQAIAAESLKQCGRGRLPEIEPPILFEDLLSRSDDWSLKIIFADAKAPGLN 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                   A +  V ++IGPEGG+  EE +      F+   SLGPRIL++DTA V A A+
Sbjct: 180 DTLP-SQEATVRRVLVMIGPEGGFTPEEIDRAIKKGFIAA-SLGPRILKADTATVGACAI 237

Query: 237 VQAICGD 243
           VQ + GD
Sbjct: 238 VQHLLGD 244


>gi|323704198|ref|ZP_08115777.1| protein of unknown function DUF558 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536264|gb|EGB26036.1| protein of unknown function DUF558 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 10/248 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            S ++RLF+          +  GD  H++  VLR++ G ++++ NG   ++ + I  +  
Sbjct: 1   MSAVRRLFIKDEDIKDGIVRIYGDDAHHIKDVLRLRIGTDLVVSNGV-KQYNASILSIES 59

Query: 64  SIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
           +      V+   +      +V       K++++D ++QK  E+G+  I PV T ++    
Sbjct: 60  TSVLLKIVDELHQVVESSINVTLFQGLPKSDKMDLIVQKCTEIGIKKIVPVETEFSIIKV 119

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             ++    ++R    +  A++Q   L +P +  P +    +   +     V   E   + 
Sbjct: 120 KEKSIGNKINRWNKISQEASKQSGRLIVPEVLEPISFTIAVNYINEFDLCVMPYERETNV 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              + L       N+ I IGPEGG+   E +T      V  ++LGPRILR++TA + A +
Sbjct: 180 RLKDVLKENNGAKNICIFIGPEGGFSHSEVDTATKNGAV-IVTLGPRILRTETAGIVAGS 238

Query: 236 LVQAICGD 243
           ++    GD
Sbjct: 239 IILYELGD 246


>gi|238924264|ref|YP_002937780.1| hypothetical protein EUBREC_1902 [Eubacterium rectale ATCC 33656]
 gi|238875939|gb|ACR75646.1| protein of unknown function DUF558 [Eubacterium rectale ATCC 33656]
          Length = 246

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 9/240 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + + FV+           +G   +++ +VLRMK G+ I + +     +   IS V    +
Sbjct: 1   MYQFFVEEEQVHSDSISITGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSVLDDEV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQ 118
              ++    + T+    +       K ++++ +IQK+VE+G+  I PV      +    +
Sbjct: 61  IAAIDSADETGTELDNHIVLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177
                + R +    SAA+Q     +P +  P T +  LK   + +  +V  +   G + +
Sbjct: 121 KAAKKLQRWQAIAESAAKQSKRTVIPTVKQPVTYKEALKIASELDSTLVPYENERGMDAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E +  +     + +++GPEGG+  EE   +     +  +SLG RILR++TA +AA+A++
Sbjct: 181 REIMGQLKAGQTIGVVVGPEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240


>gi|325914126|ref|ZP_08176479.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539629|gb|EGD11272.1| hypothetical protein TIGR00046 [Xanthomonas vesicatoria ATCC 35937]
          Length = 244

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLRCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRE 61

Query: 66  RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
              +  ++   S      +  +    +  ++D ++QK+ E+G+ AI PV    T+     
Sbjct: 62  ARALIERADMLSNESPLRITLLQGIARGEKMDLILQKATELGVTAIVPVNAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +   R   +SA EQ     +P +  P  L+   +  D   + +  D     E+ 
Sbjct: 122 ARMEKRVAHWRNVVVSACEQSGRARVPTVAAPLGLQEAAQTSDPQVRRLTLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A      + + IGPEGG+   ++ TL    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LSTLRADVE-QGLIVAIGPEGGWSPRDRATLADAGF-TGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           QA  GD
Sbjct: 238 QARFGD 243


>gi|289664251|ref|ZP_06485832.1| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 244

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLIRSHVALPLHCDQEVALPEESANHLLRVLRLREGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             T   +   R+  +SA EQ     +P +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARTEKRIAHWRSVVVSACEQSGRARIPTVAAPLGLQEAAQASDAHALRLTLD--PQGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A +   ++ + IGPEGG+   ++  L    F T L LGPRILR++TA +AA+A +
Sbjct: 180 LGTL-ASSVQQHIVVAIGPEGGWSPRDRALLADAGF-TGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|262372152|ref|ZP_06065431.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262312177|gb|EEY93262.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 239

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 15/243 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +++  L      + +   +H+   VLR K  +  + FNGK GE+   ++ + K   
Sbjct: 1   MNRFYIETELNTGNTIELTESVFHHWVRVLRAKVQEKAIFFNGKGGEYRVTLTEINKKNA 60

Query: 67  FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           F       +  +T    V       K +R+DY IQK+ E+G+  I+ + +   +      
Sbjct: 61  FVSVDHFEAIDRTAPFKVILGQVMSKGDRMDYAIQKATELGVTTIQLLTSDRCEMRLKYD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +D  ++  ++A EQC +  +P +  P ++E  ++      + V A         L
Sbjct: 121 RDQKKLDHWQSVAVAACEQCGMNIVPKVLAPISIEEWIQTDLPISRFVMAPNKDQKNVLL 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +        P +A+LIGPEGG    E    +   FV    +G R+LR++TA V A++++ 
Sbjct: 181 DA------QPELALLIGPEGGLSESEIRLSNQHGFVN-WCIGDRVLRTETAPVVALSILN 233

Query: 239 AIC 241
              
Sbjct: 234 YHF 236


>gi|322383638|ref|ZP_08057389.1| 16S ribosomal RNA methyltransferase RsmE-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151850|gb|EFX44793.1| 16S ribosomal RNA methyltransferase RsmE-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 255

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 16/251 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+       T  +  GD  H+L  V+R + G+ I++ +G   E L++I+ V K++ 
Sbjct: 1   MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R  T +  +Q   +    K ++++ +IQK  E+G     P ++  T      +
Sbjct: 61  TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R +     AAEQ     +P +    + + +L+            E   S    
Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVVEGVHSWKQILEQAARMDAAWICYEKEDSLQIR 180

Query: 179 EKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           + L     +         + +++GPEGG+  +E E          + LG RILR++TAA+
Sbjct: 181 DALFQADALKRNDDKPVRIMLIVGPEGGFTEKEIEQAEESG-CLSIGLGTRILRTETAAM 239

Query: 232 AAMALVQAICG 242
             +  +    G
Sbjct: 240 VGLTCILYETG 250


>gi|229358034|ref|YP_001914280.2| 16S ribosomal RNA methyltransferase RsmE [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 244

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V  PL    +     +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRD 61

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R  VE  +  S      +  +    +  ++D ++QK+ E+G+ AI PVI   T+     
Sbjct: 62  ARALVERVEPLSNESPLRITLMQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     LP +  P  L+   +  D H  ++    +      
Sbjct: 122 ARTEKRVAHWRSVVVSACEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLG 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L    A +   ++ + IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A 
Sbjct: 182 TL----ASSIPQHIVVAIGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAA 236

Query: 237 VQAICGD 243
           +Q+  GD
Sbjct: 237 LQSRFGD 243


>gi|301055803|ref|YP_003794014.1| RNA methyltransferase [Bacillus anthracis CI]
 gi|300377972|gb|ADK06876.1| RNA methyltransferase [Bacillus cereus biovar anthracis str. CI]
          Length = 249

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVDETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|206978414|ref|ZP_03239283.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97]
 gi|206743370|gb|EDZ54808.1| RNA methyltransferase, RsmE family [Bacillus cereus H3081.97]
          Length = 249

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVETSSELSVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|295092115|emb|CBK78222.1| RNA methyltransferase, RsmE family [Clostridium cf. saccharolyticum
           K10]
          Length = 247

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +   FVD           +G   +++ +VLRMK G+ +L+ NG+D ++L ++S +    +
Sbjct: 1   MYHFFVDRSQIHPEHITITGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEV 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++  +    T+  + V       K ++++ +IQK+VE+G   I PV +R        +
Sbjct: 61  EAEIIREKEETTELPARVCLFQGLPKGDKMELIIQKAVELGAYQIIPVASRRAVVKLDKK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R    + SAA+Q     +P I P       L      +   +  +   G E  
Sbjct: 121 KEEAKLRRWNAISESAAKQSKRRIIPQIAPVMEFREALSAVSGFDLACIPYECESGMEAV 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +        +A+ IGPEGG+   E E       V P+SLG RILR++TA +  ++++
Sbjct: 181 RKFVGQADAGQRIAVFIGPEGGFEEAEVEAAVQAG-VVPVSLGKRILRTETAGLCMLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 AFKL 243


>gi|49187206|ref|YP_030458.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Sterne]
 gi|49481319|ref|YP_038366.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321684|ref|ZP_00394643.1| COG1385: Uncharacterized protein conserved in bacteria [Bacillus
           anthracis str. A2012]
 gi|165872033|ref|ZP_02216673.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           A0488]
 gi|167634645|ref|ZP_02392965.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442]
 gi|167638597|ref|ZP_02396873.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193]
 gi|170687378|ref|ZP_02878595.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465]
 gi|170707490|ref|ZP_02897944.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389]
 gi|177653268|ref|ZP_02935520.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174]
 gi|190566983|ref|ZP_03019899.1| RNA methyltransferase, RsmE family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034476|ref|ZP_03101885.1| RNA methyltransferase, RsmE family [Bacillus cereus W]
 gi|196039365|ref|ZP_03106671.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99]
 gi|218905448|ref|YP_002453282.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820]
 gi|227817087|ref|YP_002817096.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC
           684]
 gi|228916943|ref|ZP_04080504.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935631|ref|ZP_04098445.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948024|ref|ZP_04110309.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229077351|ref|NP_846759.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Ames]
 gi|229093381|ref|ZP_04224486.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42]
 gi|229123850|ref|ZP_04253043.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201]
 gi|229220844|ref|YP_021182.2| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           'Ames Ancestor']
 gi|229600789|ref|YP_002868600.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248]
 gi|254684068|ref|ZP_05147928.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721902|ref|ZP_05183691.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           A1055]
 gi|254736416|ref|ZP_05194122.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741454|ref|ZP_05199141.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Kruger B]
 gi|254750892|ref|ZP_05202931.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Vollum]
 gi|254757780|ref|ZP_05209807.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus anthracis str.
           Australia 94]
 gi|49181133|gb|AAT56509.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           Sterne]
 gi|49332875|gb|AAT63521.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164712164|gb|EDR17701.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           A0488]
 gi|167513445|gb|EDR88815.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0193]
 gi|167530097|gb|EDR92832.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0442]
 gi|170127734|gb|EDS96607.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0389]
 gi|170668573|gb|EDT19319.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0465]
 gi|172081550|gb|EDT66622.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0174]
 gi|190561974|gb|EDV15943.1| RNA methyltransferase, RsmE family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993018|gb|EDX56977.1| RNA methyltransferase, RsmE family [Bacillus cereus W]
 gi|196029992|gb|EDX68593.1| RNA methyltransferase, RsmE family [Bacillus cereus NVH0597-99]
 gi|218534944|gb|ACK87342.1| RNA methyltransferase, RsmE family [Bacillus cereus AH820]
 gi|227006628|gb|ACP16371.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. CDC
           684]
 gi|228659564|gb|EEL15211.1| RNA methyltransferase, RsmE [Bacillus cereus 95/8201]
 gi|228689975|gb|EEL43778.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-42]
 gi|228811610|gb|EEM57946.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823991|gb|EEM69809.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842664|gb|EEM87751.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265197|gb|ACQ46834.1| RNA methyltransferase, RsmE family [Bacillus anthracis str. A0248]
 gi|269850267|gb|AAP28245.2| RNA methyltransferase, RsmE family [Bacillus anthracis str. Ames]
          Length = 249

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|302874303|ref|YP_003842936.1| hypothetical protein Clocel_1419 [Clostridium cellulovorans 743B]
 gi|307689431|ref|ZP_07631877.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium cellulovorans
           743B]
 gi|302577160|gb|ADL51172.1| protein of unknown function DUF558 [Clostridium cellulovorans 743B]
          Length = 248

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV+     +      G+   ++  VLR+K GD + + +    E+ +K++ + K   
Sbjct: 1   MHKFFVEPSEIAEGIVTIEGEDVKHIYKVLRLKVGDIVNINDCNGTEYNAKLTSIDKKEV 60

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTH 121
               +E    +      +       K  ++DY++QK  E+G+ A  PV T       +  
Sbjct: 61  KAEIIETLDSNNESPIKIVLYQGMPKATKMDYIVQKGTEVGINAFIPVNTERVVVNTSEF 120

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLE 179
             +DR+      AA+Q     +P ++ P   E LLK  +    IV   E        +L 
Sbjct: 121 KKLDRLNRIAKEAAKQSKRTIIPKVHEPIEFEELLKELEEYSLIVVPYENAENFGIKNLA 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K      + +VAI+IGPEGG+   E E L S+     ++LGPRILR++TA V   +L+  
Sbjct: 181 KGVKKEEVDSVAIIIGPEGGFEDSEIERLKSIN-AHIVTLGPRILRTETAGVVCASLIMY 239

Query: 240 ICGD 243
             GD
Sbjct: 240 ELGD 243


>gi|154248025|ref|YP_001418983.1| 16S ribosomal RNA methyltransferase RsmE [Xanthobacter
           autotrophicus Py2]
 gi|154162110|gb|ABS69326.1| protein of unknown function DUF558 [Xanthobacter autotrophicus Py2]
          Length = 242

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
              +RL+VD  L        + +Q HY+A+V+R+  G ++LLFNG+DGEW + +++   +
Sbjct: 6   FRAQRLYVDAELGPDASVLLAPEQAHYVANVIRLAVGQDLLLFNGRDGEWRATRVAGGKR 65

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            +RF+V  Q R Q +   ++Y F+P+K  RLDYM+QK+VEMG G + PVITRYTQ +  N
Sbjct: 66  DVRFEVSAQVRPQPEAPTLEYAFAPLKHARLDYMVQKAVEMGAGVLSPVITRYTQVSRIN 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           +DR+    + AAEQC IL+LP +  P  L   L        +VF DE     + +  L  
Sbjct: 126 LDRMAANAVEAAEQCGILSLPHVAEPRPLAQWLDALPAERVLVFCDEAAADHDPIHALRT 185

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               P V++LIGPEGG+  +E+  +   P    LSLGPRILR+DT
Sbjct: 186 APSGP-VSVLIGPEGGFSPDERALI--APRAVTLSLGPRILRADT 227


>gi|87134653|gb|ABD25395.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 258

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 4/239 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV+ PL    +    G Q HYL  V+R+  GD ++L +   GEW+S+++ VGK  + 
Sbjct: 22  PRLFVEMPLDQGMRLPVDGQQAHYLGKVMRVSTGDAVMLCDDATGEWVSRVAEVGKRDLV 81

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            ++E ++R + +  D     + +K    D +++K+ E+G   + PV+TR       N +R
Sbjct: 82  LEIERRTRPREEVPDFWLCAALLKKPNFDLVLEKATELGAARVVPVVTRRCVADKLNPER 141

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            RT  + AAEQC    LP +     L+ LL++W     + FADE  G   +        H
Sbjct: 142 ARTIMVEAAEQCARTALPSLGETVKLDQLLRDWPEGRTLFFADENGGIPAAAAF---SLH 198

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
               A+L+GPEGG+   E+  + + P    ++LGPRILR +TA++A M L   + GDW+
Sbjct: 199 CGPAALLVGPEGGFDETERSAIRAHPAAVGIALGPRILRGETASIAGMGLWMGLQGDWF 257


>gi|217969920|ref|YP_002355154.1| 16S ribosomal RNA methyltransferase RsmE [Thauera sp. MZ1T]
 gi|217507247|gb|ACK54258.1| protein of unknown function DUF558 [Thauera sp. MZ1T]
          Length = 246

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 9/246 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R      L    +        H+   VLR+++G+ ++LF+G  GE  ++++  GK++ 
Sbjct: 2   ISRFHFPDRLPAGGEVALPEALAHHALRVLRLRDGEAVVLFDGSGGEVDARLAVRGKAVF 61

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            ++ E ++  +     +  + +    +++D+++QK+VE+G+ AI+PV    +      + 
Sbjct: 62  ARLGEARAVERESPLRIVLVQALASGDKMDWVVQKAVELGVHAIQPVQAERSVLRLAAER 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +   I+A EQC    +P I P   L   L         V A     +    +
Sbjct: 122 ADKRVAHWQQVAIAACEQCGRNRVPEIRPLQPLAHWLGAHRAAPGYVLAPGYVLAPGGAK 181

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                    + V +L+GPEGG+   E     +      + LGPR+LR++TA +AA+A +Q
Sbjct: 182 GFADEPEPKDEVHLLVGPEGGWSEGEMAAFDAAG-CRRVRLGPRVLRTETAGLAAVAALQ 240

Query: 239 AICGDW 244
           A  GD+
Sbjct: 241 ARWGDY 246


>gi|283796176|ref|ZP_06345329.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1]
 gi|291076395|gb|EFE13759.1| RNA methyltransferase, RsmE family [Clostridium sp. M62/1]
 gi|295115547|emb|CBL36394.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium
           SM4/1]
          Length = 247

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +   FVD           +G   +++ +VLRMK G+ +L+ NG+D ++L ++S +    +
Sbjct: 1   MYHFFVDRSQIHPEHITITGPDVNHIRNVLRMKTGEQVLISNGEDRDYLCRLSRIDPDEV 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++  +    T+  + V       K ++++ +IQK+VE+G   I PV ++        +
Sbjct: 61  EAEIIREKEETTELPARVCLFQGLPKGDKMELIIQKAVELGAYQIIPVASKRAVVKLDKK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R    + SAA+Q     +P I P       L      +   +  +   G E  
Sbjct: 121 KEEAKLRRWNAISESAAKQSKRRIIPQIAPVMEFREALSAVSGFDLACIPYECESGMEAV 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +        +A+ IGPEGG+   E E       V P+SLG RILR++TA +  ++++
Sbjct: 181 RKFVGQADAGQRIAVFIGPEGGFEEAEVEAAVQAG-VVPVSLGKRILRTETAGLCMLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 AFKL 243


>gi|217979033|ref|YP_002363180.1| protein of unknown function DUF558 [Methylocella silvestris BL2]
 gi|217504409|gb|ACK51818.1| protein of unknown function DUF558 [Methylocella silvestris BL2]
          Length = 253

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 4/231 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RL+VD PL  + +      Q +YL + LR+K+G  IL FNG+DGEW ++I   
Sbjct: 3   RYDFASPRLYVDAPLAPQARVSLEAPQVNYLRNALRLKDGAEILAFNGRDGEWRARIETE 62

Query: 62  GK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G+ S     + Q R Q    D+ Y+F+P+K  RLDYM+QK+VEMG G +RPV+TR TQ  
Sbjct: 63  GRRSTVLAADQQLRPQPPPFDLHYLFAPLKHARLDYMVQKAVEMGAGQLRPVLTRRTQAE 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
             N+DR+R   I AAEQC +L++  I  P  L+  L  W  +  +VF DE    ++ +  
Sbjct: 123 RINLDRMRANAIEAAEQCGVLSVAEIIAPIRLDAALAQWSPDRLLVFCDEDAPEQDPVAA 182

Query: 181 LHAIA---HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L A         +A+LIGPEGG+  +E++ L + P    LSLGPR+LR+DT
Sbjct: 183 LRAARESNPGGGLAVLIGPEGGFDEDERKALLAAPRTVRLSLGPRVLRADT 233


>gi|163758378|ref|ZP_02165466.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43]
 gi|162284667|gb|EDQ34950.1| hypothetical protein HPDFL43_02095 [Hoeflea phototrophica DFL-43]
          Length = 250

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  L+RL++D PL  + +     +Q HYL  VLRM E   +L+FNG+DGE+LS +  
Sbjct: 7   MRANFKLQRLYLDAPLVPRQRAAMRKEQAHYLLTVLRMAEDQQVLVFNGRDGEFLSALKP 66

Query: 61  VGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K     ++  Q+R Q     + ++F+P+K  RL+Y++QK+ EMG+  I P  T +TQ 
Sbjct: 67  LSKKAAELEIVEQTRPQPPLPRLDFLFAPLKVGRLEYLVQKATEMGVRQITPAFTDHTQL 126

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N  R+    + AAEQC  L +P +     L+ LL  WD   +I+F +E+    N  +
Sbjct: 127 HKVNAARLEANILEAAEQCGNLAIPQLQEAQKLDALLDGWDPARRIIFCNESQAGNNPTD 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            L A+    ++A+L+GPEGG+   E+E L +LPF+T + LGPRILR
Sbjct: 187 ILSAVEE-RDLALLVGPEGGFSDRERERLLALPFLTAIPLGPRILR 231


>gi|307611825|emb|CBX01538.1| hypothetical protein LPW_32251 [Legionella pneumophila 130b]
          Length = 242

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM+ G+ + LFNG + E+ + I  V K   F 
Sbjct: 5   RIYQPGEYQPGQLLELSPEAGQHVGVVLRMEPGEQLTLFNGDNKEFTASIEMVKKKQVFV 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                   ++     +    +  K  R++ ++QKS E+G+  I P+IT         +  
Sbjct: 65  RIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSAELGVACITPIITERCQVKIDKEKM 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              M +     I A EQC    +P +  P  L+  ++    + +++       +      
Sbjct: 125 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            H     P+VA++IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA 
Sbjct: 185 QH-----PDVALIIGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAA 238

Query: 241 CGD 243
            GD
Sbjct: 239 GGD 241


>gi|27382634|ref|NP_774163.1| 16S ribosomal RNA methyltransferase RsmE [Bradyrhizobium japonicum
           USDA 110]
 gi|27355806|dbj|BAC52788.1| blr7523 [Bradyrhizobium japonicum USDA 110]
          Length = 252

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 144/241 (59%), Gaps = 1/241 (0%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
               RLFVD PL    +     DQ +YL +VLR+  G  +L FNG+DGEW + I    + 
Sbjct: 7   FRAPRLFVDAPLAQDARVPLDRDQSNYLGNVLRLAAGAEVLAFNGRDGEWQAAIEGRKRP 66

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
               +  Q+R Q + +D+ Y+F+P+K  RLDYM+QK++EMG   ++PV+TR+TQ +  N 
Sbjct: 67  DGLVILQQTRPQDRLADLTYVFAPLKHARLDYMVQKAIEMGAAGLQPVLTRFTQASRVNT 126

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R+R   + A+EQC IL++  +  P  LE  L        ++F DE    EN ++ L   
Sbjct: 127 ERMRANVVEASEQCGILSIATVAEPVPLERFLSQRAAGRLLIFCDEAAEVENPVQSLQGA 186

Query: 185 AH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                 + +LIGPEGG+  EE+  L   P +  L+LGPRI+R+DTAAVAA+ALVQ + GD
Sbjct: 187 REAGQGIDVLIGPEGGFAEEERALLLRQPKILRLALGPRIMRADTAAVAALALVQTVLGD 246

Query: 244 W 244
           W
Sbjct: 247 W 247


>gi|205374146|ref|ZP_03226946.1| 16S rRNA m3U1498 methyltransferase [Bacillus coahuilensis m4-4]
          Length = 248

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+        + +  GD +H++  V+RMKEGD+ L     +   + KI  +     
Sbjct: 1   MQRYFLQTD--SNERVRVKGDDFHHMIRVMRMKEGDSFLSVFQDNKSAICKIEEISNDSL 58

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
               VE++  S      +  +    K ++L+ +IQK  E+G     P      ++    +
Sbjct: 59  TASVVEWELNSTEMPVRITIVSGLPKGDKLESIIQKGTELGATEFIPFKATRSIVKWDDK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176
             H  ++R       AAEQ    T+PFI  P TL+ +L+    N    + F +E    E+
Sbjct: 119 KAHKKIERFEKIAKEAAEQSHRRTIPFISEPKTLKQILQTVPSNAVKLVAFEEEAKQGES 178

Query: 177 S--LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           S   E+L  + +  ++ ++ GPEGG   EE   L +  F++   LGPRILR++TA + A+
Sbjct: 179 SQFKEELQKVQNGDHIMMIFGPEGGLTEEEVHELKNHDFIS-CGLGPRILRTETAPLYAL 237

Query: 235 ALVQAIC 241
           A +    
Sbjct: 238 AAISYEL 244


>gi|291525040|emb|CBK90627.1| RNA methyltransferase, RsmE family [Eubacterium rectale DSM 17629]
          Length = 246

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 112/240 (46%), Gaps = 9/240 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + + FV+           +G   +++ +VLRMK G+ I + +     +   IS +    +
Sbjct: 1   MYQFFVEEEQVHSDSISITGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQ 118
              ++    + T+    +       K ++++ +IQK+VE+G+  I PV      +    +
Sbjct: 61  IAAIDSADETGTELDNHIVLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177
                + R +    SAA+Q     +P +  P T +  LK   + +  +V  +   G + +
Sbjct: 121 KAAKKLQRWQAIAESAAKQSKRTVIPTVKQPVTYKEALKIASELDITLVPYENERGMDAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E +  +     + +++GPEGG+  EE   +     +  +SLG RILR++TA +AA+A++
Sbjct: 181 REIMGQLKAGQTIGVVVGPEGGFAPEEIALVDENATMHRISLGRRILRTETAGLAALAML 240


>gi|153815335|ref|ZP_01968003.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756]
 gi|317501690|ref|ZP_07959881.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088425|ref|ZP_08337340.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847397|gb|EDK24315.1| hypothetical protein RUMTOR_01569 [Ruminococcus torques ATCC 27756]
 gi|316896941|gb|EFV19021.1| RsmE family RNA methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408192|gb|EGG87680.1| hypothetical protein HMPREF1025_00923 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 255

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F +     +++    G   +++ +VLRMK G+++ + +G+   +L  ++   K   
Sbjct: 1   MQQFFAEPSWITESEILIRGADLNHMKNVLRMKVGEDVRINDGQGTTYLCCLNRYEKDQA 60

Query: 67  FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               ++         S++       K +++++++QKSVE+G   I P   + +      +
Sbjct: 61  VLDVFRKLDTETELPSEIILFQGLPKGDKMEWIVQKSVELGAHKIVPFSAKRSVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 +R +     AAEQ     +P +    +    L+  +  +  ++  +   G   +
Sbjct: 121 KAVKKQERWQLIAKGAAEQSGRGVIPEVCGVCSFTEALEQAESLDVVLIPYELEEGMAET 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  +  I    +V I IGPEGG+   E           P++LG RILR++TA +  ++++
Sbjct: 181 VRVIEQIEPGQSVGIFIGPEGGFEEAEVLRAKEKG-ARPVTLGKRILRTETAGLTTLSIL 239

Query: 238 QA 239
             
Sbjct: 240 MY 241


>gi|71898620|ref|ZP_00680790.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
 gi|71731567|gb|EAO33628.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
          Length = 244

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
              ++E  S         +  + +  +  ++D ++QK+ E+G+ AI PV T        +
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAITRGEKMDLIVQKATELGVVAIVPVDTERSGVRLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +       ISA EQC    +P +  P  L+ L +  D +   +  D    SE+ 
Sbjct: 122 ERVAKRLAHWNNVVISACEQCGRTRVPEVQMPCALQVLPEILDPDTLRLILD--PKSEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A+A++
Sbjct: 180 LSTLSRLTPVE-VTIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAVL 237

Query: 238 QAICGD 243
           QA  GD
Sbjct: 238 QAQLGD 243


>gi|228941478|ref|ZP_04104028.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228967380|ref|ZP_04128414.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228974408|ref|ZP_04134976.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981003|ref|ZP_04141305.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407]
 gi|228778663|gb|EEM26928.1| RNA methyltransferase, RsmE [Bacillus thuringiensis Bt407]
 gi|228785244|gb|EEM33255.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792306|gb|EEM39874.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228818128|gb|EEM64203.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942094|gb|AEA17990.1| surface protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 249

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD I          +  I  +     
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|71275479|ref|ZP_00651765.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon]
 gi|71900654|ref|ZP_00682779.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
 gi|170729396|ref|YP_001774829.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M12]
 gi|71163779|gb|EAO13495.1| Conserved hypothetical protein 46 [Xylella fastidiosa Dixon]
 gi|71729589|gb|EAO31695.1| Conserved hypothetical protein 46 [Xylella fastidiosa Ann-1]
 gi|167964189|gb|ACA11199.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 244

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
              ++E  S         +  + +  +  ++D ++QK+ E+G+ AI PV T        +
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAIARGEKMDLIVQKATELGVVAIVPVDTERSGVRLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSEN 176
           +     +       +SA EQC    +P +  P  L+ L +  D +  +++   ++    +
Sbjct: 122 ERVAKRLAHWNNVVVSACEQCGRTRVPEVQMPRALQALPEILDPDTLRLILDPKSEHRLS 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +L  +A    V I IGPEGG+   + E L    F+   SLGPRILR++TA + A+A+
Sbjct: 182 TLSRLTPVA----VTIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAV 236

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 237 LQAQLGD 243


>gi|118479479|ref|YP_896630.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus thuringiensis
           str. Al Hakam]
 gi|225866292|ref|YP_002751670.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102]
 gi|229186551|ref|ZP_04313712.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1]
 gi|118418704|gb|ABK87123.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225790106|gb|ACO30323.1| RNA methyltransferase, RsmE family [Bacillus cereus 03BB102]
 gi|228596810|gb|EEK54469.1| RNA methyltransferase, RsmE [Bacillus cereus BGSC 6E1]
          Length = 249

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      +       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFMTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|149186955|ref|ZP_01865263.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21]
 gi|148829344|gb|EDL47787.1| hypothetical protein ED21_24936 [Erythrobacter sp. SD-21]
          Length = 239

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 4/230 (1%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFV   L         G+Q +YLA V+R+ +GD ++L +   GEW+++++  GK  + 
Sbjct: 13  PRLFVSDELGTGRIVCIEGNQANYLARVMRVGKGDAVILCDDVTGEWIARVTEAGKRRVE 72

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            KVE   R + +  D     + +K +R D +++KS E+G+ AI PVITR       N +R
Sbjct: 73  LKVEDHLRPREEVPDFWLCPALLKKDRFDVVLEKSTELGVAAIHPVITRRCVADKLNGER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
             T    AAEQC    LP +  P  L+ LL++W  +  + FADE  G   +    +A   
Sbjct: 133 ASTIVTEAAEQCARTALPQVAEPVKLDALLRDWPEDRILFFADEEGGEPAADAFCYADGP 192

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               A+L GPEGG+   E+  + + P   P+SLGPRILR +TAA+A +A+
Sbjct: 193 A---ALLTGPEGGFDDAERAAIRAHPAARPISLGPRILRGETAALAGIAV 239


>gi|52141192|ref|YP_085637.1| hypothetical protein BCZK4058 [Bacillus cereus E33L]
 gi|51974661|gb|AAU16211.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 249

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKHVNETSIRIVGDDVHHIARVMRMSVGDHIYCCV-NGRTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEITVLREHNFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|228929355|ref|ZP_04092379.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830306|gb|EEM75919.1| RNA methyltransferase, RsmE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 249

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGRTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTMMKPGQKLLIVFGPEGGLAEEEIIVLREHNFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|218899479|ref|YP_002447890.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842]
 gi|218543817|gb|ACK96211.1| RNA methyltransferase, RsmE family [Bacillus cereus G9842]
          Length = 249

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD I          +  I  +     
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|323141893|ref|ZP_08076754.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT
           12067]
 gi|322413640|gb|EFY04498.1| RNA methyltransferase, RsmE family [Phascolarctobacterium sp. YIT
           12067]
          Length = 247

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV  P          G    +++ VLRM+ G  + + +      L++IS +     
Sbjct: 1   MHRFFV--PQLYNETMTIEGVDARHISKVLRMQPGAQLQIVSDDGVSALAEISAIDSECV 58

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
               +E  + S      +       K  +++++IQK+VEMG  ++ PV   ++       
Sbjct: 59  TVHCLEKLAESHEPAVRLILAQGLAKGEKMEFIIQKAVEMGAYSVVPVAMEHSVVRLDGA 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R +    SAA+Q     +P + P  T+  +L   D   +I+  +       + 
Sbjct: 119 KAAKKVERWQKIAESAAKQSKRDIIPEVQPVQTMAQMLAANDCATKIIAYECEDKKSLKA 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L++  A   + ++ ++IGPEGG    E ET  +   V P+SLG RILR++TA + A++ 
Sbjct: 179 ALKEAQAKGALTDLLLIIGPEGGISEAELETARAAGAV-PVSLGRRILRAETAGLVAISA 237

Query: 237 VQAICGD 243
           +    GD
Sbjct: 238 IFYETGD 244


>gi|325922372|ref|ZP_08184146.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865]
 gi|325547154|gb|EGD18234.1| hypothetical protein TIGR00046 [Xanthomonas gardneri ATCC 19865]
          Length = 244

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  V  PL    +     +  ++L  VLR++EGD  +LFNG   ++ ++I+  GK  
Sbjct: 2   RLTRSHVALPLHCDQEVTLPEESANHLLRVLRLREGDACILFNGDGSDYHARITLAGKRE 61

Query: 66  RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
              +  +++         +  I    +  ++D ++QK+ E+G+ AI PV    T+     
Sbjct: 62  ARAMLERAQPLCNESPLSITLIQGIARGEKMDLILQKATELGVAAIVPVNAERTEVKLDP 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +   R+  ISA EQ     +P +  P  L+   +  D +   +  D     E+ 
Sbjct: 122 ARMEKRVTHWRSVVISACEQSGRARVPTVAAPLGLQDAAQASDPHALRLTLD--PHGEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L  +A    V + IGPEGG+   ++  L    F + L LGPRILR++TA +AA+A +
Sbjct: 180 LATLP-VAAQQRVIVAIGPEGGWSPRDRAILGEAGF-SGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           Q+  GD
Sbjct: 238 QSRFGD 243


>gi|254492173|ref|ZP_05105347.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxidans
           DMS010]
 gi|224462498|gb|EEF78773.1| conserved hypothetical protein TIGR00046 [Methylophaga thiooxydans
           DMS010]
          Length = 242

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R F       +         + +   VLR+K+G  I LFNGK  E+ + +++V +  
Sbjct: 2   RIPRFFCPELDASQRVLPLPEAVHRHAIQVLRLKQGARIQLFNGKGLEYQATLTHVERKR 61

Query: 66  RFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
                 E  +++     ++  +    +  R+D+ IQK+VE+G+  I PV+T         
Sbjct: 62  SEAELGEQLTQASESPLNITLLQGISRGERMDFAIQKAVELGVNQIIPVMTERCNVQLKH 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +   +   +SA EQ     LP +     ++  L +     ++V   +     N 
Sbjct: 122 DRIEKRLAHWQGVIVSACEQSGRAVLPTLSEVVDMQNALNSTADTMKLVLDPQAQTRFND 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+    +       +LIGPEGG   +E +   S  F T +  GPRILR++TA+ AA+A+V
Sbjct: 182 LQAATQL------TLLIGPEGGLTDDEVKMATSSGF-TAVQFGPRILRTETASTAALAVV 234

Query: 238 QAICGD 243
           Q++ GD
Sbjct: 235 QSLWGD 240


>gi|313669146|ref|YP_004049430.1| hypothetical protein NLA_18700 [Neisseria lactamica ST-640]
 gi|313006608|emb|CBN88073.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 241

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R  +   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MPRFHLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHAAQLTVLEKRRA 59

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++ ++  + T+   ++  I S     R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILHEETADTESPLNITLIQSISSGERMDFTLQKSVELGVTAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+  + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVSPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TA +AA+A 
Sbjct: 174 ACKLSDIRHPSGAIVFMVGPEGGWTEQEEQYAFDAGF-QAVTLGKRILRTETAPLAAIAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|154482579|ref|ZP_02025027.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC
           27560]
 gi|149736604|gb|EDM52490.1| hypothetical protein EUBVEN_00246 [Eubacterium ventriosum ATCC
           27560]
          Length = 245

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R FV      +      G   +++ +VLRMK+G+ IL+ +G+D E++  I  +  + +
Sbjct: 1   MYRFFVKKDQIQEDAVIIIGSDVNHIKNVLRMKKGETILISDGEDREYVCTIDELENEQV 60

Query: 66  RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R K+E  +  ++     V    +  K ++++ +IQK +E+G   I PV T+        +
Sbjct: 61  RAKIEDVNGVAKELPIKVTLFQALPKGDKMETVIQKMIELGAYEIVPVFTKRCIVKLDNK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                  R  +   SAA+Q     +P +  P T +  LK  +  +  ++  +      ++
Sbjct: 121 KAVSKTKRWNSIAESAAKQSKRGIIPKVSMPVTYKEALKMAEAMDMVLIPYENAENMAHT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +  I     V I IGPEGG+  EE E   +      ++LG RILR++TA +A M+++
Sbjct: 181 RQVVSQIKTGMTVGIFIGPEGGFAEEEVEQAINTGAY-DITLGKRILRTETAGMALMSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFET 243


>gi|311069145|ref|YP_003974068.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942]
 gi|310869662|gb|ADP33137.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus atrophaeus 1942]
          Length = 256

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     +        +G+  H++ +V+RM  GD I+  +    E   ++  V K
Sbjct: 1   MQRYFIELTKQQMEAGPAFMITGEDVHHITNVMRMSAGDEIICCSLDGHEAKCELQSVSK 60

Query: 64  SIRFKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                +  E+   ++     V       K ++L+++IQK  E+G     P     +    
Sbjct: 61  EKVACLVSEWTGANRELPIKVHIASGLPKGDKLEWIIQKGTELGSSMFLPFQAARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P + P  T + LL       + V A E    +
Sbjct: 121 DDKKAKKKRERWTKIAKEAAEQSYRNEIPDVAPVHTFQQLLSKVQDFDKCVVAYEESSKQ 180

Query: 176 N----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                 +  L ++    ++ I+ GPEGG    E E L     V P  LGPRILR++TA +
Sbjct: 181 GETSALVSVLSSLPDQSSLLIIFGPEGGLTESEVEQLKDKGAV-PCGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A+  V  
Sbjct: 240 YALGAVSY 247


>gi|52843130|ref|YP_096929.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52630241|gb|AAU28982.1| hypothetical protein lpg2936 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 244

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F 
Sbjct: 7   RIYQPGEYQPGQLLELSPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIERVKKKQVFV 66

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                   ++     +    +  K  R++ ++QKS E+G+  I P+IT         +  
Sbjct: 67  RIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSAELGVACITPLITERCQVKIDKEKM 126

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              M +     I A EQC    +P +  P  L+  ++    + +++       +      
Sbjct: 127 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 186

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  P+VA++IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA 
Sbjct: 187 -----QPPDVALIIGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAA 240

Query: 241 CGD 243
            GD
Sbjct: 241 GGD 243


>gi|291557449|emb|CBL34566.1| RNA methyltransferase, RsmE family [Eubacterium siraeum V10Sc8a]
          Length = 257

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D           + +   ++A VLRM++GD  ++ +    ++L ++S        
Sbjct: 17  PRFFSDTIDENDRIIYMNDEDSKHIAQVLRMRKGDKAIICDKNGHDYLCELSSADNKNSV 76

Query: 68  K---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +   ++ +  S     ++    +  K ++LD+++QK+ E+G   I P +++        +
Sbjct: 77  EFAILDKKDNSAEPDIEITLYQAIPKNDKLDFIVQKATELGAVRIVPFMSKRCVSRPDAK 136

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +    + R++     A++QC    +P + P T  +  + + D +   +   E  G + S 
Sbjct: 137 SADKKVQRLQRIAYEASKQCGRGKIPGVMPFTDFKSAVNSIDSDTLPIIFYECGGKKLSE 196

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L        +A+ IG EGG+  EE +   S    T + LG RILR +TA VAA+A++ 
Sbjct: 197 LDLS----YKKIAVFIGSEGGFEKEEVDYALSKG-ATAVHLGERILRCETAPVAALAVLM 251

Query: 239 AICG 242
            + G
Sbjct: 252 NLTG 255


>gi|172056822|ref|YP_001813282.1| hypothetical protein Exig_0784 [Exiguobacterium sibiricum 255-15]
 gi|171989343|gb|ACB60265.1| protein of unknown function DUF558 [Exiguobacterium sibiricum
           255-15]
          Length = 248

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+           S D  H++ +V+RM  GD IL+ +G    +  ++  + K   
Sbjct: 1   MQRYFVEQTARAGNTFTLSKDDAHHIKNVMRMDVGDEILVLDGTG-LFRCRLEQLDKQTA 59

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
               +E           V   ++  K ++++ + QK+ E+G+  +      R V     +
Sbjct: 60  VAELLEELPIETELPIHVTIAYALPKGDKVELVAQKATELGVSRLLVFESARSVSKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R++  +  AAEQ     LP I    T + +L+        + A E    E   
Sbjct: 120 KIPKKLERLQKISKEAAEQSYRAHLPTIEY-VTYDEVLQCAADYTACLIAYEESAKEGEA 178

Query: 179 EK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L  +    ++ ++IGPEGG    E   L +  FV P SLG RILR++TA +  +
Sbjct: 179 AAFASTLSRLQSGDSLLVVIGPEGGLTETEVTRLTAGGFV-PASLGRRILRTETAPLYVL 237

Query: 235 ALVQAIC 241
           + V    
Sbjct: 238 SAVSYHF 244


>gi|210623864|ref|ZP_03294099.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275]
 gi|210153290|gb|EEA84296.1| hypothetical protein CLOHIR_02050 [Clostridium hiranonis DSM 13275]
          Length = 256

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FVD       +      G+   ++  VLR +EG+ + + +G+D E++ +I  + K 
Sbjct: 7   MDRFFVDKNNINLEENTCIIEGEDVKHITKVLRYREGEKLEICDGEDNEYVGEIKSMSKE 66

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                 ++ +   +  +  V+      K  +++Y++QK  E+G   I  V T+ +     
Sbjct: 67  EVCLDIIDKRDIKRESKLRVRVYQGMPKGPKMEYILQKLTEVGTDEIILVDTKRSVAKVD 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     ++R       AA+Q     +P +    + +  L++   N   +   E   +  
Sbjct: 127 GKKEDKKLERWERIIYEAAKQSKRGKIPTLKGVLSFKEALEDMKRNDYNICPYEDERNIP 186

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++++  +  I ++ I IGPEGG   EE + L        ++LGPRILR++TA+  A AL
Sbjct: 187 LVKEIRGL-DIESIGIFIGPEGGIADEEIDALKENG-AKVVTLGPRILRTETASTVASAL 244

Query: 237 VQAICGD 243
           VQ   GD
Sbjct: 245 VQYELGD 251


>gi|54295775|ref|YP_128190.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens]
 gi|53755607|emb|CAH17109.1| hypothetical protein lpl2865 [Legionella pneumophila str. Lens]
          Length = 244

 Score =  242 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F 
Sbjct: 7   RIYQPGEYQPGQFLELSPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIEMVKKKQVFV 66

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                   ++     +    +  K  R++ ++QKS E+G+  I P+IT         +  
Sbjct: 67  RIASVLEVNRESPLKIHLAQAISKGERMEMVMQKSAELGVACITPIITERCQVKIDKEKM 126

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              M +     I A EQC    +P +  P  L+  ++    + +++       +      
Sbjct: 127 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 186

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  P+VA++IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA 
Sbjct: 187 -----QPPDVALIIGPEGGFSDEEIRLTSGHGFL-PLSLGPRVLRTETAAITALSVLQAA 240

Query: 241 CGD 243
            GD
Sbjct: 241 GGD 243


>gi|148361269|ref|YP_001252476.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby]
 gi|148283042|gb|ABQ57130.1| hypothetical protein LPC_3243 [Legionella pneumophila str. Corby]
          Length = 242

 Score =  242 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F 
Sbjct: 5   RIYQPGEYQPGQVLELSPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTASIERVKKKQVFV 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                   ++     +    +  K  R++ ++QKS E+G+  I P+IT         +  
Sbjct: 65  RIASVLEVNRESPLKIHLAQAISKGERMEVVMQKSAELGVACITPIITERCQVKIDKEKM 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              M +     I A EQC    +P +  P  L+  ++    + +++       +      
Sbjct: 125 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  P+VA++IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA 
Sbjct: 185 -----QPPDVALIIGPEGGFSDEEITLTSGYGFL-PLSLGPRVLRTETAAITALSVLQAA 238

Query: 241 CGD 243
            GD
Sbjct: 239 GGD 241


>gi|187935444|ref|YP_001885097.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B
           str. Eklund 17B]
 gi|187723597|gb|ACD24818.1| conserved surface protein [Clostridium botulinum B str. Eklund 17B]
          Length = 254

 Score =  242 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 14/250 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F        ++GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  VGK   
Sbjct: 1   MHKFFTSACNITGSEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
               +E  S +   + ++       K  ++D ++QK  E+G+    P+IT       +  
Sbjct: 61  IVNILEELSTNNESRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              ++R+    + AA+Q     +P +      +  L        I+   E     G ++ 
Sbjct: 121 FKKLERLNRIALEAAKQSKRSIIPNVREVVEFDEALNELQGLDLILVPYENAENFGFKSL 180

Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +++L      +  I N+ I+IGPEGG+   E ETL        ++LG RILR++TA   A
Sbjct: 181 VKELSDKNVDLNSIENIGIVIGPEGGFEESEIETLK-HKGAYIITLGNRILRTETAGFVA 239

Query: 234 MALVQAICGD 243
            +L+Q    D
Sbjct: 240 TSLIQYELAD 249


>gi|182680714|ref|YP_001828874.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa M23]
 gi|182630824|gb|ACB91600.1| protein of unknown function DUF558 [Xylella fastidiosa M23]
          Length = 242

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+   
Sbjct: 1   MSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRREA 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
             ++E  S         +  + +  +  ++D ++QK+ E+G+ AI PV T        ++
Sbjct: 61  WARIEGVSEVCNESPLAITLVQAITRGEKMDLIVQKATELGVVAIVPVDTERSGVRLDSE 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +       ISA EQC    +P +  P  L+ L +  D +   +  D    SE+ L
Sbjct: 121 RVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILD--PKSEHRL 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A+A++Q
Sbjct: 179 STLSRLTPVE-VIIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAVLQ 236

Query: 239 AICGD 243
           A  GD
Sbjct: 237 AQLGD 241


>gi|84786494|gb|ABC62676.1| hypothetical protein ELI_02920 [Erythrobacter litoralis HTCC2594]
          Length = 260

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 25/257 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FKVEY 71
             P+   T     G+  HYL  V+R+  GD ++L +   GEW  K++ V K I   +   
Sbjct: 2   PEPIAAGTAVTVDGNAAHYLGKVMRVSAGDAVILCDDATGEWACKVTDVEKRIVTLEPVE 61

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT 131
           + R + +  D     + +K +R D +++K+ E+G+ AIRPV+TR       N +R R   
Sbjct: 62  KLREREQVPDFWLCPALLKKDRFDLVLEKATELGVRAIRPVVTRRCVADKLNAERARAIV 121

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--------------------- 170
             AAEQC    LP +  P  L+ LL++W  +  + FADE                     
Sbjct: 122 TEAAEQCARTALPELAEPVKLDSLLRDWPEDRALFFADELGGAPAGEAFVTYSESLRRQG 181

Query: 171 -TCGSENSLEKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
              G +  L+   A         A+LIGPEGG+   E++ + + P    ++LGPRILR +
Sbjct: 182 PQAGKDPHLDDQAARGPRLRGGAALLIGPEGGFDDAERKAIRAHPQARAITLGPRILRGE 241

Query: 228 TAAVAAMALVQAICGDW 244
           TAA+AA AL     GDW
Sbjct: 242 TAAIAATALWMGTVGDW 258


>gi|310826526|ref|YP_003958883.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612]
 gi|308738260|gb|ADO35920.1| hypothetical protein ELI_0908 [Eubacterium limosum KIST612]
          Length = 245

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           + R FV             G+ + ++  VLR+++ + I + +G+  ++++ +  VGK   
Sbjct: 1   MHRFFVSPGQIEDGLVTIEGEDFKHITKVLRLRDDEAIEVCDGRGTDYIACVETVGKDSL 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----Q 118
             R      SR +T    V       K  +++ +IQK VE G  +I P  +  T      
Sbjct: 61  KGRILESRPSRGETDSLRVTLFQGVPKGQKMESVIQKCVEAGAASIVPFTSERTVVKLGD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R +     AA+Q     +P +   TTL  +    D+   ++ A E     +  
Sbjct: 121 KEEKKTRRWQRVAYEAAKQSKRGIIPHVAEVTTLSAVADTLDNYDLVLIAYEGEEESSLK 180

Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + +  +      +A++IGPEGG+   E   +      + +SLG RILR++TA V  +A +
Sbjct: 181 DVISCLEFDPERIAVIIGPEGGFAPAEVAMIEEAGGYS-VSLGRRILRTETAGVVLLAQL 239

Query: 238 QAICGD 243
                D
Sbjct: 240 NFFYED 245


>gi|115522898|ref|YP_779809.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris BisA53]
 gi|115516845|gb|ABJ04829.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           BisA53]
          Length = 258

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 96/229 (41%), Positives = 134/229 (58%), Gaps = 2/229 (0%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           ++     RLFVD PL   TQ   + +Q +YL +VLR+  G  +L FNG DGEW + I   
Sbjct: 3   QLDFRSPRLFVDAPLVAGTQVPLTREQANYLGNVLRLSPGGRVLAFNGSDGEWQALIVGG 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +  R ++  Q+R Q +  DV Y ++P+K  RLDYM+QK+VE+G  A+ PV+TR+TQ T 
Sbjct: 63  KRLERLEMLLQTRPQDRLPDVTYAYAPLKHARLDYMVQKAVELGAAALVPVLTRFTQATR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            N +R+R   I AAEQC IL+L  +  PT LE  L   D    +VF DE     + +  L
Sbjct: 123 VNTERMRANVIEAAEQCGILSLAAVEEPTKLERWLTARDGQRLLVFCDEDAEIADPVAAL 182

Query: 182 HAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                     + +LIGPEGG+  EE++ L   P V  L+LGPRI+R+DT
Sbjct: 183 AGARDRAQAGIDVLIGPEGGFAEEERDLLLRQPSVLRLALGPRIMRADT 231


>gi|304316647|ref|YP_003851792.1| hypothetical protein Tthe_1189 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778149|gb|ADL68708.1| protein of unknown function DUF558 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 240

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 111/232 (47%), Gaps = 8/232 (3%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQT 77
               + +GD  H++  VLR K G  +++ NGK+   +S +     S+  K+  + ++   
Sbjct: 8   DGIVRINGDDAHHIIDVLRFKIGTKLIISNGKNQYIVSILDIENSSVILKIIEEYNQVVE 67

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131
              ++       K++++D +IQK  E+G+  I PV T ++      +N +  ++R +  +
Sbjct: 68  SPINITLYQGLPKSDKMDLIIQKCTEIGIKKIVPVETEFSTIKIKEKNIYNKINRWKKIS 127

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           + A++Q     +P +  P   +  L++ +     +   E   +    + L    +  N+ 
Sbjct: 128 LEASKQSGRSIVPDVLVPVGFKDALESLNEFDLCLIPYEKETNMRLKDVLKKNFNAKNIC 187

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + IGPEGG+   E         + P++LGPRILR++TA +   +++    GD
Sbjct: 188 VFIGPEGGFSENEIMAAIEYGAI-PVTLGPRILRTETAGIVTSSIILYELGD 238


>gi|167564119|ref|ZP_02357035.1| hypothetical protein BoklE_16297 [Burkholderia oklahomensis EO147]
          Length = 253

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 18/253 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S + R FVD  L          D   +   VLR+  GD + LFNG  G++ +++  + K 
Sbjct: 6   SAIPRFFVDAELQSDATLALPADVARH-VQVLRLAAGDAVTLFNGAGGQYRAEVVELDKR 64

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   +          +  +      +++D++I+K+VE+G  AI P+ T        
Sbjct: 65  AALVRIGAFTPADVEAPYRITLVQGIAGGDKMDWLIEKAVELGAAAIAPLSTARGVVRLS 124

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADET 171
            +     +   +    ++ EQC    +P + P   +   L            +++ +   
Sbjct: 125 GERAQKRVAHWQAVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELRLMLSPRA 184

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                    L  +     V +LIGPEGG   +E+E      F + + LGPR+LR++TA +
Sbjct: 185 SVG---FADLPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFAS-ILLGPRVLRTETAGI 240

Query: 232 AAMALVQAICGDW 244
           A +A + A  G W
Sbjct: 241 AMLAALAARWGGW 253


>gi|241664175|ref|YP_002982535.1| hypothetical protein Rpic12D_2592 [Ralstonia pickettii 12D]
 gi|240866202|gb|ACS63863.1| protein of unknown function DUF558 [Ralstonia pickettii 12D]
          Length = 249

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R FVD PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + K   
Sbjct: 3   LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINKRDA 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
              +   ++  T+    +         +++D++I+K+VE+G+ A+ P+ T         +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAVTPLQTERAVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176
                +   +    +A EQC    +P + P +TL   L         +++ +     S  
Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVAPVSTLREWLAAARSTDAPRVLLSPRGTQSLT 181

Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                         + +LIGPEGG   +E+    S  F+ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|317128303|ref|YP_004094585.1| hypothetical protein Bcell_1591 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473251|gb|ADU29854.1| protein of unknown function DUF558 [Bacillus cellulosilyticus DSM
           2522]
          Length = 250

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++R F++  +  +     SGD   +++ V+RM++GDNI+        +   IS +  S I
Sbjct: 1   MQRYFINPQMFHEDHVVISGDDAKHISRVMRMEQGDNIICCTTSGVCYECVISEMKDSYI 60

Query: 66  RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +E Q  +S     +V       K ++ +++IQK  E+G     P     +      +
Sbjct: 61  YATIEKQESKSVELPVNVTIGHGLPKGDKFEWVIQKGTELGAKNFLPFEAERSIVKLDKK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +DR       AAEQ     LP +        LL + D    ++ A E     +  
Sbjct: 121 KADKKIDRWNKIAKEAAEQSHRQQLPKVMEVQRFSQLLDHVDGYSYVLVAYEEAAKNDEK 180

Query: 179 EK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +    L  +    ++  L GPEGG+   E   L          LGPRILRS+TA +  +
Sbjct: 181 SQLFSVLQEVKKGESILFLFGPEGGFSDREINELTKKG-ALICGLGPRILRSETAPLYGL 239

Query: 235 ALVQAIC 241
             +    
Sbjct: 240 TAISYHL 246


>gi|187930070|ref|YP_001900557.1| hypothetical protein Rpic_3002 [Ralstonia pickettii 12J]
 gi|187726960|gb|ACD28125.1| protein of unknown function DUF558 [Ralstonia pickettii 12J]
          Length = 249

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R FVD PL   T          ++ HVLR+  GD+I LF+G   E+ +++  + K   
Sbjct: 3   LPRFFVDTPLAPNTTVTLDESVTRHI-HVLRLAAGDDICLFDGSGYEFRARLDAINKRDA 61

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               V+        +  +         +++D++I+K+VE+G+ A+ P+ T         +
Sbjct: 62  TASLVDATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERGVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176
                +   +    +A EQC    +P + P  TL   L         +++ +     S  
Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPVVAPVATLREWLATAKSTDAPRVLLSPRGAQSLT 181

Query: 177 SLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                     + + + +LIGPEGG   +E+    +  F+ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAVQSRTRIVGSGIVLLIGPEGGLSPDEEALAEAAGFL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|169349834|ref|ZP_02866772.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552]
 gi|169293402|gb|EDS75535.1| hypothetical protein CLOSPI_00572 [Clostridium spiroforme DSM 1552]
          Length = 246

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 11/240 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D  L  K     +G+  H+L +V+R K G+ I+  +     +L  +  + + + 
Sbjct: 1   MQRYFIDEDLKDKDCLILTGNDLHHLKNVMRSKNGEKIICIDINGMVYLCVLDDLDQGLI 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
             VE    +     +V  +++  K ++ + ++QK+ E+G+  I P+ITR           
Sbjct: 61  KIVEELDENNELDVEVTLVYALPKGDKFELVLQKTTELGVSRIVPLITRRCVVKSDKAKF 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE---NS 177
              + R       A +Q     +P I     L+  LK +  +  +V  +E   ++     
Sbjct: 121 SKKLTRYEKILKEATQQSRRNKVPEIVNVIKLDE-LKEYLGDYNLVAYEEKAKNDTDFAL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  +     + I++G EGG+  EE   + S+  +   SLG RILRS+TA +  ++++
Sbjct: 180 KECLKQLNPGDKITIIVGSEGGFDYEEISMMESMN-INACSLGKRILRSETAPLYLLSVI 238


>gi|251779327|ref|ZP_04822247.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083642|gb|EES49532.1| conserved surface protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 254

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 14/250 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F        T+GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  VGK   
Sbjct: 1   MHKFFTSACNITGTEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIESVGKQEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
               +E  S +   + ++       K  ++D ++QK  E+G+    P+IT       +  
Sbjct: 61  IVNILEELSTNNESRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              ++R+    + AA+Q     +P +      +  L        I+   E     G ++ 
Sbjct: 121 FKKLERLNRIALEAAKQSKRSIIPNVREVVEFDEALNELQRLDLILVPYENAENFGFKSL 180

Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +++L      +  I N+ ++IGPEGG+   E ETL        ++LG RILR++TA   A
Sbjct: 181 VKELSDKNVDLNSIENIGVVIGPEGGFEESEIETLK-HKGAYIITLGNRILRTETAGFVA 239

Query: 234 MALVQAICGD 243
            +L+Q    D
Sbjct: 240 TSLIQYELAD 249


>gi|229075985|ref|ZP_04208958.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18]
 gi|228707097|gb|EEL59297.1| RNA methyltransferase, RsmE [Bacillus cereus Rock4-18]
          Length = 249

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G+ A  P     +      +
Sbjct: 60  ETAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGVAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|229098782|ref|ZP_04229720.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29]
 gi|228684626|gb|EEL38566.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-29]
          Length = 249

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  ETAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|28198087|ref|NP_778401.1| hypothetical protein PD0156 [Xylella fastidiosa Temecula1]
 gi|28056147|gb|AAO28050.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|307579179|gb|ADN63148.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 244

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
              ++E  S         +  + +  +  ++D ++QK+ E+G+ AI PV T        +
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAITRGEKMDLIVQKATELGVVAIVPVDTERSGVRLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +       ISA EQC    +P +  P  L+ L +  D +   +  D    SE+ 
Sbjct: 122 ERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQVLPEILDPDTLRLILD--PKSEHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L  +  +  V I IGPEGG+   + E L    F+   SLGPRILR++TA + A+A++
Sbjct: 180 LSTLSRLTPVE-VIIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAVL 237

Query: 238 QAICGD 243
           QA  GD
Sbjct: 238 QAQLGD 243


>gi|163791113|ref|ZP_02185532.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7]
 gi|159873585|gb|EDP67670.1| hypothetical protein CAT7_03214 [Carnobacterium sp. AT7]
          Length = 253

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 15/249 (6%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F+   L           GD +H++  V+RMK G  + L       ++++I+ +   
Sbjct: 1   MQRYFLKDDLTDYQNQTISIDGDSFHHMVKVMRMKVGHRVYLVTKDQKAFIAEINAIEDQ 60

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRY 116
                 VE   R Q    +V       K ++LD +IQK  E+G  A  P      +    
Sbjct: 61  DVLLNWVEDDLRQQELPIEVTIASGLPKGDKLDLIIQKGTELGAHAFIPFAGSFSITKWD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-- 174
            +      +R++     AAEQ     +P + P ++++ L++  +     + A E      
Sbjct: 121 AKKAAKKTERLQKIAQEAAEQSHRTKIPTVQPLSSVKQLVEMKNQFDVCLVAYEESAKAG 180

Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             +N ++ L  +     + I+ GPEGG   EE +      F+ P +LGPRILR++TA + 
Sbjct: 181 EDQNFVKGLKLLPAGGKLLIVFGPEGGLSKEEVDAFIESGFL-PCALGPRILRTETAPLY 239

Query: 233 AMALVQAIC 241
           A+A      
Sbjct: 240 ALAATSYHF 248


>gi|20807439|ref|NP_622610.1| hypothetical protein TTE0958 [Thermoanaerobacter tengcongensis MB4]
 gi|20515963|gb|AAM24214.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 245

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++++FV+            G  +H+L HVLR K GD I++ +  + E L +I  + K   
Sbjct: 1   MRKIFVEKGKIKGKFAYVDGKDFHHLIHVLRYKVGDKIVVSDMAE-EHLGRIEKIEKDRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           I F  E    +     +V      +K +++D ++QK  E+G+  I P ++ ++       
Sbjct: 60  ILFLEEKMEGNAESPLEVFLFQGILKADKMDLIVQKCTEIGVKRIIPFVSEFSVVDIKRA 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N    ++R +  +  A +Q     +P I  P + +  ++        +   E    +   
Sbjct: 120 NIDKKVERWKKISEEACKQSGRNIIPEISAPVSFKEAIEKAMECDLAIIPYEKEEKKRLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L  +     + I IGPEGG+  +E E   +   + P++LGPRILR++TAA+A  A+V 
Sbjct: 180 EVLKDVEDAKKIGIFIGPEGGFSQKEIEKAINNG-IVPVTLGPRILRAETAAIAVSAIVM 238

Query: 239 AICGD 243
              GD
Sbjct: 239 YQLGD 243


>gi|89100454|ref|ZP_01173316.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911]
 gi|89084797|gb|EAR63936.1| hypothetical protein B14911_05471 [Bacillus sp. NRRL B-14911]
          Length = 248

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F +       +   +GD +H++  V+RMKEGD+I+         + +I  +     
Sbjct: 1   MQRYFTNRD--KDGRFIIAGDDFHHITRVMRMKEGDSIICAVRGGRSAVCRIEEITDEQV 58

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               V+++  S              K ++L+ +IQK  E+G     P     +      +
Sbjct: 59  IAEVVQWKEASSELPIKAAIASGLPKGDKLELIIQKGTELGASVFIPFTAARSIVKWDEK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                 +R +     AAEQ      P +  P +++ L+       + V A E    +   
Sbjct: 119 KAGKKTERWQKIAKEAAEQSHRDLQPDVLQPVSMKELIDLGKGYDRKVIAYEEDAKDGES 178

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 L  +    ++ ++ GPEGG   +E   L    F++   LGPRILR++TA + A+
Sbjct: 179 SAFASLLSGMEKGQSLLMVFGPEGGLSEKEVALLKDNGFLS-CGLGPRILRTETAPLYAL 237

Query: 235 ALVQAIC 241
           A V    
Sbjct: 238 AAVSYHF 244


>gi|229104942|ref|ZP_04235598.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28]
 gi|228678436|gb|EEL32657.1| RNA methyltransferase, RsmE [Bacillus cereus Rock3-28]
          Length = 249

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  ETAIVEWVEVSSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEVAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|299822883|ref|ZP_07054769.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816412|gb|EFI83650.1| RsmE family RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 252

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 14/248 (5%)

Query: 7   LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R FVD  L             +H+LA V+RM  GD + +    +    ++I  V   K
Sbjct: 1   MQRYFVDQVLTTDDDPIYIEAADHHHLARVMRMTTGDQVYIVFADNQFCTAEIVSVSEDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
           ++   VE+Q+ +      +       K ++L++++QK  E+G  +       R ++    
Sbjct: 61  TLLKLVEWQTNNPELPIAITIASGLPKGDKLEWIVQKGTELGADSFIAFPSDRSIVKWDA 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           + T    +R++     AAEQ   + +P I    + + L +       +V A E     N 
Sbjct: 121 KKTEKKRERLQKIAKEAAEQSHRVHVPTITTLASGKQLAERCGEYDAVVVAYEESAKANE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L     A+     + ++ GPEGG   +E +   +        LGPRILR++TA +  
Sbjct: 181 KAVLASVFAALRPGMRLLVIFGPEGGISEQEIQLFKAQK-AHFAGLGPRILRTETAPLYL 239

Query: 234 MALVQAIC 241
           +A      
Sbjct: 240 LAAASYQF 247


>gi|56421036|ref|YP_148354.1| 16S ribosomal RNA methyltransferase RsmE [Geobacillus kaustophilus
           HTA426]
 gi|56380878|dbj|BAD76786.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 258

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 96/247 (38%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV            SGD  +++A V+RMK GD I+         + +I  +     
Sbjct: 1   MQRYFVSGQAQQGGIVAISGDDAYHIARVMRMKPGDGIICVFPDGRTAVCEIEQIANEHV 60

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
                Q + +       +       K  + + +IQK  E+G     P      V+    +
Sbjct: 61  QARIVQWKEERSELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFEAARSVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +     AAEQ +   +P +  P +   LL         +FA E        
Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTVVPDVRAPLSFVELLSFGQTVDVRLFAYEKEARNARH 180

Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             L A    +     +  + GPEGG+  EE E L    F +P SLGPRILR++TA +  +
Sbjct: 181 AALPALLSRLRPGGALLAVFGPEGGFSPEEAEQLRQHGF-SPCSLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYEW 246


>gi|325295443|ref|YP_004281957.1| ribosomal RNA small subunit methyltransferase E [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065891|gb|ADY73898.1| Ribosomal RNA small subunit methyltransferase E [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 241

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 18/246 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R  VD            G +  +   VLR+++GD I++F+G+  E+L++I      S+
Sbjct: 1   MQRFKVDK--VGNGVAYLRGQEARHALKVLRLRKGDEIIIFDGEGREYLAEIEAASPTSV 58

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           R KV E  + ++              K  + +  IQK+ E+G+  I PV+ + +      
Sbjct: 59  RLKVLEEININRDSHLKTTLYMGLTNKLQKFELAIQKATELGVTEIIPVVCKRSSNAQNI 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +N    + R     ++AA+QC    LP ++ P  L  +    + +   V  ++   S   
Sbjct: 119 KNWDNKLRRWEEIVVNAAKQCGRNILPIVHSPVKLPEI--ENNSDLLFVLWEKGGKSLKD 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E   A     +V++++GPEGG+  EE E L    F  P+ LG RILR++TAA+A M LV
Sbjct: 177 YESFSA----SSVSLIVGPEGGFDKEEIEILKEKGF-KPIYLGKRILRAETAAIAGMTLV 231

Query: 238 QAICGD 243
           Q + GD
Sbjct: 232 QFLWGD 237


>gi|270158328|ref|ZP_06186985.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289163426|ref|YP_003453564.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498
           methyltransferase) [Legionella longbeachae NSW150]
 gi|269990353|gb|EEZ96607.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288856599|emb|CBJ10406.1| Ribosomal RNA small subunit methyltransferase E (16S rRNA m3U1498
           methyltransferase) [Legionella longbeachae NSW150]
          Length = 242

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 118/243 (48%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM+EG+++ LF G + E+ + I  V K     
Sbjct: 5   RIYQPGNYDTGQLLELSPEASQHVGVVLRMQEGEHLTLFCGDNREFDAIIETVKKKQVIV 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           V    +  S+     +    +  K  R+++++QK+VE+G+ +I P++T         +  
Sbjct: 65  VVGSIKKVSRESPLTIHLAQAISKGERMEWVMQKAVELGVASITPILTERCVVKLDQERM 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + + +   I+A EQ    ++P ++ P TL   L+      + +       +      
Sbjct: 125 TKKLHQWQAIVIAACEQSGRNSVPQVHAPVTLSRYLEEIQAELKFILHPGQNKTWRDYTF 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                 + ++ +LIGPEGG   +E +      F  PLSLGPRILR++TAA+ A++++QA+
Sbjct: 185 -----KVADIVLLIGPEGGLSEQEVQYTSKHGF-QPLSLGPRILRTETAAITALSVLQAV 238

Query: 241 CGD 243
            GD
Sbjct: 239 GGD 241


>gi|85858413|ref|YP_460615.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB]
 gi|85721504|gb|ABC76447.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
          Length = 274

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 8/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           + RL+    L +  +   S +  HY+  V RMK G  + LF+G+  E+ + I  +  +  
Sbjct: 16  IPRLYYPCVLTVGDRCFLSEEHLHYVRSVQRMKPGSRLSLFDGRGQEYTAVIVDISAERA 75

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             ++  +  +  + + +  I +  K  ++D+++QK+ E+G+  I P  +  +      + 
Sbjct: 76  LAEIIDRKSAPERPARITLIQALPKGQKMDFIVQKATELGVDEILPFSSERSIPRLPPEK 135

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R R     AA QC    +P I    +   +LK  D +   +   E    +   +
Sbjct: 136 ARLKTERWRKIAGEAARQCRRSDVPNIPEIQSFAGILKAADADSLKMIFWEEESRQGLKD 195

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L   +     +IL+GPEGG  SEE E   +  FV+ +SLG +IL+ +TAAVA +A++Q 
Sbjct: 196 LLKKFSGTCIFSILVGPEGGLTSEEVEAATAAGFVS-VSLGKQILKLETAAVAILAIIQY 254

Query: 240 ICG 242
             G
Sbjct: 255 EVG 257


>gi|296108607|ref|YP_003620308.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650509|gb|ADG26356.1| hypothetical protein lpa_04293 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 242

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F 
Sbjct: 5   RIYQPGEYQPGQVLELSPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFV 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                   ++     +    +  K  R++ ++QKS E+G+  I P+IT         +  
Sbjct: 65  RIASVLEVNRESPLKIHLAQAISKGERMEVVMQKSAELGVACITPIITERCQVKIDKEKM 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              M +     I A EQC    +P +  P  L+  ++    + +++       +      
Sbjct: 125 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  P+VA++IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA 
Sbjct: 185 -----QPPDVALIIGPEGGFSDEEITLTSGYGFL-PLSLGPRVLRTETAAITALSVLQAA 238

Query: 241 CGD 243
            GD
Sbjct: 239 GGD 241


>gi|83941416|ref|ZP_00953878.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36]
 gi|83847236|gb|EAP85111.1| hypothetical protein EE36_04268 [Sulfitobacter sp. EE-36]
          Length = 220

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQ 83
              Q HYL  V+R   G ++LLFNG DGEW ++++  GK         Q++      D+ 
Sbjct: 2   DKAQAHYLFGVMRQSVGASVLLFNGIDGEWRAEVAEAGKRGGVLACAEQTKPLHMPPDLW 61

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            IF+PIK  R D++++K+ EMG   I PV + +T       DR++ + + AAEQC    +
Sbjct: 62  LIFAPIKKARTDFIVEKAAEMGARRIVPVQSEFTNAGRVQRDRLQAHAVEAAEQCGGTFV 121

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +     L+ L+  W+    ++F DE    E   E+  A A     AILIGPEGG+   
Sbjct: 122 PEVADMVRLDRLIDRWEPERSLMFCDEALAGE---EEGLASARPGPWAILIGPEGGFSDS 178

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E+  L  L +  P++LGPRILR+DTAAVAAM L Q   GDW
Sbjct: 179 ERARLRGLDWSRPVALGPRILRADTAAVAAMTLWQKTLGDW 219


>gi|54298937|ref|YP_125306.1| 16S ribosomal RNA methyltransferase RsmE [Legionella pneumophila
           str. Paris]
 gi|53752722|emb|CAH14157.1| hypothetical protein lpp3004 [Legionella pneumophila str. Paris]
          Length = 244

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R++           + S +   ++  VLRM++G+ + LFNG + E+ + I  V K   F 
Sbjct: 7   RIYQPGEYQPGQVLELSPEAGQHVGVVLRMEQGEQLTLFNGDNQEFTAFIERVKKKQVFV 66

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                   ++     +    +  K  R++ ++QKS E+G+  I P+IT         +  
Sbjct: 67  RIASVLEVNRESPLKIHLAQAISKGERMEVVMQKSAELGVACITPIITERCQVKIDKEKM 126

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              M +     I A EQC    +P +  P  L+  ++    + +++       +      
Sbjct: 127 AKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPV 186

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  P+VA++IGPEGG+  EE        F+ PLSLGPR+LR++TAA+ A++++QA 
Sbjct: 187 -----QPPDVALIIGPEGGFSDEEITLTSGYGFL-PLSLGPRVLRTETAAITALSVLQAA 240

Query: 241 CGD 243
            GD
Sbjct: 241 GGD 243


>gi|257095553|ref|YP_003169194.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048077|gb|ACV37265.1| protein of unknown function DUF558 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 254

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 16/247 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R     PL +  Q         +   VLR++ GD + LF G  GE+ ++I+ + + +R 
Sbjct: 5   PRFHCPVPLAVGAQVDLPEVVAQHAVKVLRLRRGDAVTLFTGAGGEYSARIAGIER-LRV 63

Query: 68  KVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            VE      T+      +  + +    +++D  +QK+VE+G+    PVI+R +      Q
Sbjct: 64  SVEILQWLPTERESPLSITLVQALQAGDKMDMTVQKAVELGVDRFVPVISRRSVVRLADQ 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSEN 176
                 +  R    ++ EQC    LP +  P +LE  L         +++ A        
Sbjct: 124 RALRRAEHWRGVVAASCEQCGRNRLPEVAIPESLEHWLMRPPPPGVLRLLLAPVASY--- 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           SL  L   +   ++ +L+G EGG   EE        F++ + LGPRILR++TA +AA+A 
Sbjct: 181 SLAMLSGPSADGHIELLVGAEGGLAPEEVRLAALAGFLS-VRLGPRILRTETAGLAALAA 239

Query: 237 VQAICGD 243
           +Q + GD
Sbjct: 240 IQFLWGD 246


>gi|229117808|ref|ZP_04247172.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3]
 gi|228665605|gb|EEL21083.1| RNA methyltransferase, RsmE [Bacillus cereus Rock1-3]
          Length = 249

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKHVSEAKIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFV 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  ETAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEVPEVHAPASFKQLLSMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV   SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFVL-CSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|228902836|ref|ZP_04066980.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222]
 gi|228856792|gb|EEN01308.1| RNA methyltransferase, RsmE [Bacillus thuringiensis IBL 4222]
          Length = 249

 Score =  240 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD I          +  I  +     
Sbjct: 1   MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGPRILR++TA + A+
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PSSLGPRILRTETAPLYAL 238

Query: 235 ALVQAIC 241
           +      
Sbjct: 239 SAASYHF 245


>gi|15894567|ref|NP_347916.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium
           acetobutylicum ATCC 824]
 gi|15024214|gb|AAK79256.1|AE007641_2 Uncharacterized conserved protein, ortholog of YQEU B.subtilis
           [Clostridium acetobutylicum ATCC 824]
 gi|4104515|gb|AAD02055.1| unknown [Clostridium acetobutylicum DSM 1731]
 gi|325508699|gb|ADZ20335.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 250

 Score =  240 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV             GD   ++  VLR+K G+ + + +    E+L +I  + K   
Sbjct: 1   MHKFFVGAENICDNTAYIYGDDVKHIYKVLRLKVGEKVSINDCNSHEFLGEIEQINKENV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QN 119
               +E    +     +V       K  ++D ++QK+ E+G+  I P+IT+       ++
Sbjct: 61  KVKIIENLDINNESPLNVYLYQGFPKAAKMDIIVQKNTELGIREIIPLITQRVVVKNEKS 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR       AA+Q     +P +    +    ++       ++   E        +
Sbjct: 121 ELKKVDRWNRIAFEAAKQSKRSVIPKVKDIASFNSAIEELKEMDLVLVPYENQEKVGMKK 180

Query: 180 KLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              AI    I NVAI+IGPEGG+   E E L  +     ++LGPRILR++TA +   +LV
Sbjct: 181 VAAAIEKNKIKNVAIVIGPEGGFEETEIEELKKIGAY-IITLGPRILRTETAGLVCTSLV 239

Query: 238 QAICGD 243
                D
Sbjct: 240 MYELSD 245


>gi|114567095|ref|YP_754249.1| hypothetical protein Swol_1575 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338030|gb|ABI68878.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 248

 Score =  240 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 105/246 (42%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           + R FV              +Q  ++  VLR+K GD + +F+G   E+  ++    + I 
Sbjct: 1   MPRFFVSADNIKGNSVLIDEEQTRHIEKVLRLKSGDIVKVFDGNGNEYQVRLQEKKQKIL 60

Query: 66  -RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +  ++ ++    ++  +    ++ ++D++IQK+VE+G+ ++ P+ + ++      +
Sbjct: 61  QAEILAQETTAEDLAINLTLVQGIARSEKMDFIIQKAVELGVRSLIPLQSEHSVARFDKE 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA--DETCGSEN 176
                + R +     A +QC    +P + P      L+        ++    +       
Sbjct: 121 KEGKKIKRWQKIAQEACKQCGRNHIPEVKPILDFPALMAQIGDKPALLCYEQEREAYFRT 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L +         + ++IGPEGG+   E E      +     LGPR LR++TA++ A  +
Sbjct: 181 LLREQRENFCTQGLFLIIGPEGGFSPAEVEIARRQGWFIA-GLGPRTLRTETASLLACGI 239

Query: 237 VQAICG 242
           +    G
Sbjct: 240 IMYEYG 245


>gi|323443249|gb|EGB00867.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           O46]
          Length = 250

 Score =  240 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  ITVDLKEKQNINTELPVDVTICSGLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|313618886|gb|EFR90752.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua
           FSL S4-378]
          Length = 255

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV++ L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
                V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLLLQEVN-AKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|16800575|ref|NP_470843.1| 16S ribosomal RNA methyltransferase RsmE [Listeria innocua
           Clip11262]
 gi|16413980|emb|CAC96738.1| lin1507 [Listeria innocua Clip11262]
          Length = 255

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV++ L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
                V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L      +    +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSVLTNLFQTMKPGQSVLCIFGPEGGISEKELLLLQEVN-AKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|309783107|ref|ZP_07677826.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA]
 gi|308918215|gb|EFP63893.1| RNA methyltransferase, RsmE family [Ralstonia sp. 5_7_47FAA]
          Length = 249

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R FVD PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + K   
Sbjct: 3   LPRFFVDTPLAPNTTVTLPEAVTRHI-HVLRLAVGDDVCLFDGSGHEFRARLDAINKRDA 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
              +   ++  T+    +         +++D++I+K+VE+G+ A+ P+ T         +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVNAVAPLQTERAVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176
                +   +    +A EQC    +P + P +TL   L         +++ +     S  
Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVAPVSTLREWLAAARSTDAPRVLLSPRGTQSLT 181

Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                         + +LIGPEGG   +E+    S  F+ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAVQSRTRIEGSGIVLLIGPEGGLSPDEEALAESAGFL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|113869103|ref|YP_727592.1| 16S ribosomal RNA methyltransferase RsmE [Ralstonia eutropha H16]
 gi|113527879|emb|CAJ94224.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 250

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 15/250 (6%)

Query: 8   KRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            R FV   D  L  ++          +   VLR+  GD + LF+G+ G   + +  +GK 
Sbjct: 3   PRFFVGGTDTVLAAESDFPLPEPVVRH-VQVLRLVPGDAMTLFDGRGGSHAATLVELGKR 61

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   + +        V         +++D++I+K+VE+G+ AI+P+    +     
Sbjct: 62  HALARIGAHDAAEAEPPFRVTLAQGLAGGDKMDWLIEKAVELGVTAIQPLQASRSVVRLS 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSE 175
            +  H      +    +A EQC    LP + P    E  L        +++ +     S 
Sbjct: 122 GERAHKRHAHWQALVQAACEQCGRNRLPEVAPVANFETWLAQSAAGGARLLVSPRATHSL 181

Query: 176 NS-LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            + + +         V +LIGPEGG   +E++    + F T +SLGPRILR++TA +A +
Sbjct: 182 PAFIAEQRESLLAGGVTLLIGPEGGLAPDEEQAARQVGF-TGVSLGPRILRTETAGLACL 240

Query: 235 ALVQAICGDW 244
           A + A+ G +
Sbjct: 241 ATLNALLGGF 250


>gi|188588657|ref|YP_001920258.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498938|gb|ACD52074.1| conserved surface protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 254

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 14/250 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F        T+GK  GD   ++  VLR+ EG+ ++L N +  E+L +I  VGK   
Sbjct: 1   MHKFFTSACNITGTEGKILGDDVKHIYKVLRLNEGEKVVLNNCEGKEYLGEIQSVGKQEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
               +E  S +   + ++       K  ++D ++QK  E+G+    P+IT       +  
Sbjct: 61  IVNILEELSTNNESRVNITLFQGLPKGQKMDLIVQKGTELGIKEFVPIITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSENS 177
              ++R+    + AA+Q     +P +         L        I+   E     G ++ 
Sbjct: 121 FKKLERLNRIALEAAKQSKRSIIPNVREVVEFNEALNELQRLDLILVPYENAENFGFKSL 180

Query: 178 LEKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +++L      +  I N+ ++IGPEGG+   E ETL        ++LG RILR++TA   A
Sbjct: 181 VKELSDKNVDLNSIENIGVVIGPEGGFEESEIETLK-HKGAYIITLGNRILRTETAGFVA 239

Query: 234 MALVQAICGD 243
            +L+Q    D
Sbjct: 240 TSLIQYELAD 249


>gi|225387763|ref|ZP_03757527.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme
           DSM 15981]
 gi|225046138|gb|EEG56384.1| hypothetical protein CLOSTASPAR_01533 [Clostridium asparagiforme
           DSM 15981]
          Length = 247

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 113/245 (46%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +   FV+       Q + +G   +++ +VLRM+ G+   L +G   + L  +  +  +S+
Sbjct: 1   MHHFFVEPEQIRDGQVRITGPDVNHMKNVLRMRPGEEF-LVSGGGNDLLCAVESLDVQSV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR------YTQN 119
             ++  +  S+   + +       K+++++ +IQK+VE+G   I PV T+        + 
Sbjct: 60  GARILGEQPSRELPAGIWLFQGLPKSDKMELIIQKAVELGAAGIIPVATKNAVVKLDAKK 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD---HNCQIVFADETCGSEN 176
               + R +    SAA+Q     +P I    + +  +   D    + +++  +   G E 
Sbjct: 120 EESRLRRWQAIAESAAKQSKRSLVPEIGRVLSFKEAVARMDRDGFDLRLLPYENERGMEA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           + E    +     +A+ IGPEGG+   E     S   + P+SLG RILR++TA +A +A 
Sbjct: 180 TREAFTRVREAKRIAVFIGPEGGFDETEVNLARSAD-ILPVSLGKRILRTETAGLAVLAA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LMLRL 243


>gi|229825010|ref|ZP_04451079.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC
           49176]
 gi|229790757|gb|EEP26871.1| hypothetical protein GCWU000182_00359 [Abiotrophia defectiva ATCC
           49176]
          Length = 246

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 11/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           +   F+D           +G   +++ +VLRMKE D I L  G    + + IS     + 
Sbjct: 1   MSNFFIDSGNIDGENAYVTGSDVNHIKNVLRMKESDEIKLSAGDGLLYTATISEFLPDRI 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
           +   ++ +       + +       K ++++ +IQK+VE+G+  I PV+ + T       
Sbjct: 61  VCRIIDCEGGKSELPAKIVLFQGLPKKDKMELIIQKAVELGVSEIVPVMMKRTIVKFEDN 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
           +     ++R RT +++AA+Q     +P +    T    +K  +     ++  +   G + 
Sbjct: 121 KKEQKKLERWRTISLTAAKQSGRAVVPEVSDFITFNEAVKRAEGLEYNLIPYENEKGMDK 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           + E +  + +  ++ I IGPEGG   +E E   +     P+SLG RILR++TA +A +++
Sbjct: 181 ARELIKEVKNKKSIGIFIGPEGGISEDELELAINAG-AKPISLGNRILRTETAGLALVSV 239

Query: 237 VQAI 240
           +   
Sbjct: 240 IAFE 243


>gi|33592148|ref|NP_879792.1| hypothetical protein BP0998 [Bordetella pertussis Tohama I]
 gi|33571792|emb|CAE41299.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332381564|gb|AEE66411.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS]
          Length = 246

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 9/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R + D  L             H+   VLR++ G  ++LF+G  GE+ + +   GK+  
Sbjct: 3   LPRFYCDARLAPGECVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAW 62

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
            ++  +  R       +  +      +++D++++K+VE+G   + P+  + +        
Sbjct: 63  AQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGAR 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +    +AAEQC    L  +  P  L   L         +         +   
Sbjct: 123 AEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAPGAALRLLCHPE-AELDLAG 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L   A   ++ +L+GPEGG+  EE E   +   V  +  GPR+LR++TA +A +A V A
Sbjct: 182 ALARHAAHDDICLLVGPEGGWSDEELEQARAAG-VQAVRFGPRVLRTETAGIALIAAVSA 240

Query: 240 ICG 242
           I G
Sbjct: 241 IRG 243


>gi|46907698|ref|YP_014087.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093476|ref|ZP_00231239.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 4b H7858]
 gi|226224071|ref|YP_002758178.1| hypothetical protein Lm4b_01480 [Listeria monocytogenes Clip81459]
 gi|254824471|ref|ZP_05229472.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254932655|ref|ZP_05266014.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254991899|ref|ZP_05274089.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           FSL J2-064]
 gi|46880967|gb|AAT04264.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018152|gb|EAL08922.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876533|emb|CAS05242.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584214|gb|EFF96246.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593708|gb|EFG01469.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|328465513|gb|EGF36742.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           1816]
 gi|332311912|gb|EGJ25007.1| Protein YqeU [Listeria monocytogenes str. Scott A]
          Length = 255

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++  V+RMKE D + +        ++ I+ +    
Sbjct: 1   MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
            F   V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L      +    +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|33595836|ref|NP_883479.1| hypothetical protein BPP1163 [Bordetella parapertussis 12822]
 gi|33600365|ref|NP_887925.1| hypothetical protein BB1379 [Bordetella bronchiseptica RB50]
 gi|33565915|emb|CAE36464.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|33567964|emb|CAE31877.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 246

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 9/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R + D  L    +        H+   VLR++ G  ++LF+G  GE+ + +   GK+  
Sbjct: 3   LPRFYCDARLAPGERVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAW 62

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
            ++  +  R       +  +      +++D++++K+VE+G   + P+  + +        
Sbjct: 63  AQLGAHVPREAELPGRITLVQGLPAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGAR 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +    +AAEQC    L  +  P  L   L         +         +   
Sbjct: 123 AEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLAQAPGAALRLLCH-PQAELDLAG 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L   A   ++ +L+GPEGG+  EE E   +   V  +  GPR+LR++TA +A +A V A
Sbjct: 182 ALARHAAHDDICLLVGPEGGWSDEELEQARAAG-VQAVRFGPRVLRTETAGIALIAAVSA 240

Query: 240 ICG 242
           I G
Sbjct: 241 IRG 243


>gi|254827758|ref|ZP_05232445.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258600138|gb|EEW13463.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 255

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++  V+RMKE D + +        ++ I+ +    
Sbjct: 1   MQRYFVTNELENDNDTLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
            F   +++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VFLNVLKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L      +    +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|194290708|ref|YP_002006615.1| 16S ribosomal RNA methyltransferase rsme [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224543|emb|CAQ70554.1| conserved hypothetical protein, DUF558 [Cupriavidus taiwanensis LMG
           19424]
          Length = 253

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 18/253 (7%)

Query: 8   KRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            R FV   D  L  ++          + A VLR+  GD I LF+G+ G   + +  +GK 
Sbjct: 3   PRFFVGGADAVLAAESDFPLPEPVVRH-AQVLRLAPGDAITLFDGRGGSHAATLVELGKR 61

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   + +        V         +++D++I+K+VE+G+ AI+P+    +     
Sbjct: 62  HALARIGAHDAAEAEPPFRVTLAQGLAGGDKMDWLIEKAVELGVAAIQPLQASRSVVRLS 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETC 172
            +         +    +A EQC    LP +   T L+  L       +   +++ +    
Sbjct: 122 GERAQKRQSHWQALVQAACEQCGRNRLPAVAEVTNLDTWLARVAQSGNGGTRLLLSPRAA 181

Query: 173 GSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            +  +L      A + + V +LIGPEGG   EE++      F T +SLGPRILR++TA +
Sbjct: 182 QALPALVAERREALLADGVTLLIGPEGGLAPEEEQAALQAGF-TGVSLGPRILRTETAGL 240

Query: 232 AAMALVQAICGDW 244
           A +A + A+ G +
Sbjct: 241 ACLATLNALLGGF 253


>gi|167571263|ref|ZP_02364137.1| hypothetical protein BoklC_15582 [Burkholderia oklahomensis C6786]
          Length = 253

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 18/253 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S + R FVD  L          D   +   VLR+  GD + LFNG  G++ ++   + K 
Sbjct: 6   SAIPRFFVDAELQSDATLALPADVARH-VQVLRLAAGDAVTLFNGAGGQYRAEFVELDKR 64

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   +          +         +++D++I+K+VE+G  AI P+ T        
Sbjct: 65  AALVRIGAFTPADVEAPYRITLAQGIAGGDKMDWLIEKAVELGAAAIAPLSTARGVVRLS 124

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADET 171
            +     +   +    ++ EQC    +P + P   +   L            +++ +   
Sbjct: 125 GERAQKRVAHWQGVVRASCEQCGRNRVPDVAPVRDIHAWLAALPAAPAPDELRLMLSPRA 184

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                    L  +     V +LIGPEGG   +E+E      F + + LGPR+LR++TA +
Sbjct: 185 SVG---FADLPGMPPAGGVTLLIGPEGGLAPDEEEAARERGFAS-ILLGPRVLRTETAGI 240

Query: 232 AAMALVQAICGDW 244
           A +A + A  G W
Sbjct: 241 AMLAALAARWGGW 253


>gi|194366854|ref|YP_002029464.1| 16S ribosomal RNA methyltransferase RsmE [Stenotrophomonas
           maltophilia R551-3]
 gi|194349658|gb|ACF52781.1| protein of unknown function DUF558 [Stenotrophomonas maltophilia
           R551-3]
          Length = 245

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 12/246 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R  +D  L          +  ++L  V+R++EGD  +LFNG   ++ + ++  GK  
Sbjct: 2   RVTRCPIDLALHSGQTVTLPEETANHLVRVMRLREGDTCVLFNGDGHDYSATLTVAGKRE 61

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           ++ +++      T+    +  +    +  ++D ++QK+ E+G+ AI PV    T+     
Sbjct: 62  VQVRIDAVQAIDTESPLAITLLQGIARGEKMDLILQKATELGVAAIVPVNAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +        SA  Q     +P + PP +L         +   +  D      + 
Sbjct: 122 ARAEKRVAHWNNVVTSACGQSGRARIPQVGPPLSLAQAAAALPVDTLRLTLD--PQGAHR 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L  L A A    + I IGPEGG+   +++ L +  F   L LGPRILR++TA +AA+A +
Sbjct: 180 LSTLDA-APGGGIVIAIGPEGGWSPRDRDQLAAAGF-QGLQLGPRILRTETAGLAAIAAL 237

Query: 238 QAICGD 243
           QA  GD
Sbjct: 238 QARLGD 243


>gi|254852095|ref|ZP_05241443.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300765613|ref|ZP_07075592.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|258605395|gb|EEW18003.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300513714|gb|EFK40782.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
          Length = 255

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++  V+RMKE D + +        ++ I+ +    
Sbjct: 1   MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
            F   V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VFLNLVKWLKEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L      +    +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|317133522|ref|YP_004092836.1| protein of unknown function DUF558 [Ethanoligenens harbinense
           YUAN-3]
 gi|315471501|gb|ADU28105.1| protein of unknown function DUF558 [Ethanoligenens harbinense
           YUAN-3]
          Length = 239

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 15/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           + R F       +T G  +G    ++A VLRM+ GD + + +    ++L +I S    ++
Sbjct: 1   MPRFFTQD--VDETHGCITGADAAHIARVLRMRPGDKLTVCDLAGSDYLCEILSAAPDAV 58

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             +V E +         V       K ++++ ++QKSVE+G+  + PV+T    +     
Sbjct: 59  ELRVLEKRPTIAEPSVHVTLFQGLPKADKMELIVQKSVELGVSRVVPVLTARCVSRPDRA 118

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R +     AA+Q     LP +          +      + V   E  G  +  
Sbjct: 119 TLAKKTARWQKIAAEAAKQSGRGRLPVVGEAVDFSAAARELAGMERGVLFYEKGGDAH-- 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L     +  + + IGPEGG+  EE      L  V   +LGPRILR++TA +  ++++ 
Sbjct: 177 --LGVWNGVREIGVCIGPEGGFADEEVALAGELG-VRVCTLGPRILRTETAPLCVLSVIM 233

Query: 239 AICG 242
              G
Sbjct: 234 YATG 237


>gi|15836795|ref|NP_297483.1| 16S ribosomal RNA methyltransferase RsmE [Xylella fastidiosa 9a5c]
 gi|9104989|gb|AAF83003.1|AE003872_14 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 244

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 14/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  V+ PL +  +        ++L  VLR+ EGD  +LFNG   ++L+++   G+  
Sbjct: 2   RLSRCHVNVPLILGNEIILPELVANHLLRVLRLCEGDTCVLFNGDGHDYLARLIATGRRE 61

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
              ++E  S         +  + +  +  ++D + QK+ E+G+ AI PV T        +
Sbjct: 62  AWARIEGVSEVCNESPLAITLVQAIARGEKMDLIAQKATELGVVAIVPVDTERSGVRLDS 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSEN 176
           +     +       ISA EQC    +P +  P  L+ L +       +++   ++    +
Sbjct: 122 ERVAKRLAHWNNVVISACEQCGRTRVPEVQMPRALQALPEILHPDTLRLILDPKSEHRLS 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +L +L  +A    V I IGPEGG+   + E L    F+   SLGPRILR++TA + A+A+
Sbjct: 182 TLSRLTPVA----VTIAIGPEGGWSPRDLEILKDAGFI-GFSLGPRILRTETAGLTAIAV 236

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 237 LQAQLGD 243


>gi|313623733|gb|EFR93877.1| ribosomal RNA small subunit methyltransferase E [Listeria innocua
           FSL J1-023]
          Length = 255

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTNELENDNDTLTITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEDE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
                V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVVPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSVLASLFQTMKPGQSVLCIFGPEGGISEKELLLLQEVN-AKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|291531082|emb|CBK96667.1| RNA methyltransferase, RsmE family [Eubacterium siraeum 70/3]
          Length = 257

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 14/244 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D           + +   ++A VLRM++GD  ++ +    ++L ++S        
Sbjct: 17  PRFFSDTIDENDRIIYMNDEDSKHIAQVLRMRKGDKAIICDKNGHDYLCELSSAENKSAI 76

Query: 68  K---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +   ++ +        ++    +  K ++LD+++QK+ E+G   I P +++        +
Sbjct: 77  EFGILDKKDNLAEPDVEITLFQAVPKNDKLDFIVQKATELGAMRIVPFLSKRCVSRPDTK 136

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +    + R++     A++QC    +P + P T  +  + + D +   +   E  G + S 
Sbjct: 137 SADKKVQRLQRIAYEASKQCGRGKIPGVMPFTDFKSAVNSIDSDTLPIIFYECGGKKLSE 196

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L        +A+ IG EGG+  EE +   S    T + LG RILR +TA VAA+A++ 
Sbjct: 197 LDLS----YKKIAVFIGSEGGFEKEEVDYALSKG-ATAVHLGERILRCETAPVAALAVLM 251

Query: 239 AICG 242
            + G
Sbjct: 252 NLTG 255


>gi|333029175|ref|ZP_08457236.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           coprosuis DSM 18011]
 gi|332739772|gb|EGJ70254.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           coprosuis DSM 18011]
          Length = 231

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 9/236 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +   +      I    +   D+  + + VLR+ EGD+I L +GK   + ++I+    K  
Sbjct: 1   MPIFYTP---NIDQIKELPSDEAKHCSRVLRLTEGDHITLTDGKGNFYEAEITLTTPKKC 57

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
            F +         +  +     P K  +R +++ +K+ E+G      +  ++++      
Sbjct: 58  LFNILETHTPTPPKVYIHLAMGPTKNMDRNEWVAEKATEIGFNEFTFLNCQFSERKIIKT 117

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DRV    +SA +Q    TLP +   T  +  +     N Q   A     ++  L++L+ I
Sbjct: 118 DRVEKILVSAMKQSKRATLPKLNEMTPFKTFITQ-PFNGQKFIAHCYKENQELLKELYTI 176

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               N  ILIGPEG +  EE +      F  P+SLG   LR++TAA+ A + +  +
Sbjct: 177 --GENALILIGPEGDFSPEEIQLALDNGF-QPISLGDSRLRTETAAIFACSTINIL 229


>gi|260589081|ref|ZP_05854994.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583]
 gi|260540501|gb|EEX21070.1| RNA methyltransferase, RsmE family [Blautia hansenii DSM 20583]
          Length = 246

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+       Q   SG   +++ +VLRMK  + IL+ +G+D E+   I  +G+   
Sbjct: 1   MYRFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEI 60

Query: 67  FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                  Q       S +       K+++++ +IQK+VE+G+  + PV    ++     +
Sbjct: 61  LAHIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVA---SKRAVVKL 117

Query: 125 D---------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGS 174
           D         R +  + SAA+Q   + +P I    + +  +        ++F  E   G 
Sbjct: 118 DKKKEEKKITRWQAISESAAKQSKRMYVPEITNVMSFQQAVDYAGKLDIVLFPYELADGM 177

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + + E +  I    +V I IGPEGG+   E            ++LG RILR++TA +  +
Sbjct: 178 KKTKEIIGKIKPGQSVGIFIGPEGGFEESEVALAKEKADAQVITLGKRILRTETAGLTVL 237

Query: 235 ALVQAIC 241
           A++    
Sbjct: 238 AILMYTL 244


>gi|23016538|ref|ZP_00056293.1| COG1385: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 254

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 22/247 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL        + DQ HYLA V+R + G+ +LLFNG DGEW ++I+ + K+    
Sbjct: 11  RLFVDAPLSEGVAVALTRDQTHYLASVMRAELGEMVLLFNGTDGEWAARIAALPKAGAAL 70

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V E Q+R Q  + D+  + +P+K +R D +++K+ E+G+  + PV TR T     N DR+
Sbjct: 71  VPERQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSLLMPVFTRRTNAGRVNTDRL 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R + I AAEQC+ L++P +  P  L+ +L +W  +  ++F DE          L+ +   
Sbjct: 131 RAHLIEAAEQCERLSVPQLSEPCPLDKVLADWPTDRILLFLDEGGSGIPLAHVLNGM-PG 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMALV 237
             +A+L+GPEGG+ +EE+  + S  F   + LGPRILR                    +V
Sbjct: 190 EKLALLVGPEGGFDAEERRLIGSKSFARAVGLGPRILRAETAAIAALA----------VV 239

Query: 238 QAICGDW 244
           QA+ GDW
Sbjct: 240 QALTGDW 246


>gi|116872901|ref|YP_849682.1| hypothetical protein lwe1485 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741779|emb|CAK20903.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 255

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 14/248 (5%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++  V+RMKE D + +        ++ I+ +    
Sbjct: 1   MQRYFVTNELENDHDTIFITGENFHHITRVMRMKEADQVFIVFPSKKTCVATITAINDEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                V++   +     ++       K ++L+ +IQKS E+G     P     +      
Sbjct: 61  VVLNLVKWLEENTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVAKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P +    + + L+ N  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVQYAASFKELMLNHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   +E   L      T   LGPRILR++TA +  
Sbjct: 181 DSALPSLFQTMKKGQSVLCIFGPEGGISEKELILLQDAN-TTLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAIC 241
           ++      
Sbjct: 240 LSAASFYF 247


>gi|284801857|ref|YP_003413722.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578]
 gi|284994999|ref|YP_003416767.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923]
 gi|284057419|gb|ADB68360.1| hypothetical protein LM5578_1612 [Listeria monocytogenes 08-5578]
 gi|284060466|gb|ADB71405.1| hypothetical protein LM5923_1564 [Listeria monocytogenes 08-5923]
          Length = 255

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTSELENDNDTLAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
                V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L      +    +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|315645962|ref|ZP_07899083.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453]
 gi|315278723|gb|EFU42037.1| hypothetical protein PVOR_10924 [Paenibacillus vortex V453]
          Length = 256

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 108/252 (42%), Gaps = 17/252 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        + + +GD   ++  V+R + GD +++ +G   E + +I  +  +  
Sbjct: 1   MQRYFVTPAQFEGDRVEITGDDARHITKVMRGRLGDKLIVSDGVSREAMVEIESLEAASV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           F V  +S     +  +Q   +    K ++++ +IQK  E+G  +  P ++  T      +
Sbjct: 61  FAVVIESMEMRNEPRLQVTIAQSLPKGDKMETVIQKCTEIGAVSFAPFLSERTIVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P +  P +   LL  +     + F  E        
Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRVPSVEQPLSWRNLLAAFSSYDAVCFCYEKEHGSQLR 180

Query: 179 EKL-----HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           + L      A+    +   + +++GPEGG+  EE         V+ + LG RILR +TA 
Sbjct: 181 DVLKPFVEQALPESGSQACLLLVVGPEGGFTEEECRAAEDAGAVS-VGLGRRILRCETAG 239

Query: 231 VAAMALVQAICG 242
           + A+A      G
Sbjct: 240 MTALACALYESG 251


>gi|322417811|ref|YP_004197034.1| hypothetical protein GM18_0269 [Geobacter sp. M18]
 gi|320124198|gb|ADW11758.1| protein of unknown function DUF558 [Geobacter sp. M18]
          Length = 246

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  F+        +   +G+ Y ++A VLR+K+G  + L +         I  VG K++
Sbjct: 1   MRSFFLGDNTVCDGEATVTGELYRHMARVLRLKQGAEVELIDADGRRHAGVIEEVGAKAL 60

Query: 66  RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
             ++   S    ++    V       K  +LD ++QK  E+G+  +      R V+    
Sbjct: 61  TVRITVSSAPPREEPGLQVTLYQGLPKGEKLDLILQKCTELGVAEVVTFDAARSVVKLRG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           + T     R       AA Q    T P +    TL+ +LK+  H  +++   E       
Sbjct: 121 EKTASKQARYEKIVQEAARQSGRCTPPRVAIGGTLKEVLKDAGHTVKLLLW-EGEEKTTL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L       +VA+++GPEGG  +EE E   +  F TP++LG RILR++TA +A ++++
Sbjct: 180 RDCLGKYEAPESVAVVVGPEGGLSAEEVEQALACGF-TPVTLGKRILRTETAGLAMISIL 238

Query: 238 QAICGD 243
           Q   GD
Sbjct: 239 QFHWGD 244


>gi|118594425|ref|ZP_01551772.1| hypothetical protein MB2181_02115 [Methylophilales bacterium
           HTCC2181]
 gi|118440203|gb|EAV46830.1| hypothetical protein MB2181_02115 [Methylophilales bacterium
           HTCC2181]
          Length = 246

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 19/250 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +KR +    L +      S    H+  +V+R+K  D I+LFN    ++ ++I  + K+ R
Sbjct: 1   MKRFYHPDALELDQIANLSKVAAHHATNVMRLKLSDKIILFNNDVYDFGAEIIRISKN-R 59

Query: 67  FKVEYQSRSQTKQS---DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +V  QS+   ++     ++ I S   T ++D++IQKSVE+G+  I P+ ++ +      
Sbjct: 60  VEVVIQSKIANRKDSDLKIRLIQSISSTEKMDWIIQKSVELGVHTIVPIFSQRSIIKLNN 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCG 173
                 +   +    SA EQC    +P I+ P   +    N       + +++ +     
Sbjct: 120 DRAEKKLSHWKQIIQSACEQCGRSKVPEIFIPKKFDAFWSNETISNKDHLKLILSPLA-- 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +NS   +  I     + I+IGPEGG+  EE        F+ P  +GPRILR++TA +A 
Sbjct: 178 -KNSFRTISTIKPSA-IDIMIGPEGGFSEEEVVNAEKNGFI-PFEIGPRILRTETAPLAM 234

Query: 234 MALVQAICGD 243
           +AL+Q   GD
Sbjct: 235 LALLQYKYGD 244


>gi|40889937|pdb|1VHK|A Chain A, Crystal Structure Of An Hypothetical Protein
 gi|40889938|pdb|1VHK|B Chain B, Crystal Structure Of An Hypothetical Protein
 gi|40889939|pdb|1VHK|C Chain C, Crystal Structure Of An Hypothetical Protein
 gi|40889940|pdb|1VHK|D Chain D, Crystal Structure Of An Hypothetical Protein
          Length = 268

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD-FPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           L+R F++     I+       +G++ H++ +V R  EGD I+  +    E   ++  V K
Sbjct: 3   LQRYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSK 62

Query: 64  SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                  +E+ + ++     V       K ++L+++IQK  E+G  A  P     +    
Sbjct: 63  DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 122

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    + + LL+      + V A E    +
Sbjct: 123 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQ 182

Query: 176 NSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             +    AI        ++ I+ GPEGG    E E L     VT   LGPRILR++TA +
Sbjct: 183 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGVT-CGLGPRILRTETAPL 241

Query: 232 AAMALVQA 239
            A++ +  
Sbjct: 242 YALSAISY 249


>gi|83746774|ref|ZP_00943822.1| surface protein [Ralstonia solanacearum UW551]
 gi|207744320|ref|YP_002260712.1| hypothetical protein RSIPO_02511 [Ralstonia solanacearum IPO1609]
 gi|83726543|gb|EAP73673.1| surface protein [Ralstonia solanacearum UW551]
 gi|206595725|emb|CAQ62652.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 249

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 117/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R ++D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +   
Sbjct: 3   LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINRRDA 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   ++  T+    +         +++D++I+K+VE+G+ AI P+ T         +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAITPLQTERGVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176
                +   +    +A EQC    +P + P TTL   L     +   +++ +     S  
Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQSLT 181

Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                         + +LIGPEGG   +E+    +  ++ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|167750969|ref|ZP_02423096.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702]
 gi|167656148|gb|EDS00278.1| hypothetical protein EUBSIR_01954 [Eubacterium siraeum DSM 15702]
          Length = 257

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D           + +   ++A VLRM++GD  ++ +    ++L ++S +      
Sbjct: 17  PRFFSDTIDENDRIIYMNDEDSKHIAQVLRMRKGDKAIICDKNGHDYLCELSSLENKNAI 76

Query: 68  K---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +   ++ +        ++    +  K ++LD+++QK+ E+G   I P +++        +
Sbjct: 77  EFGILDKKDNLAEPDVEITLFQAVPKNDKLDFIVQKATELGAVRIVPFLSKRCVSRPDAK 136

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +    + R++     A++QC    +P + P T  +  + + D +   +   E  G + S 
Sbjct: 137 SADKKVQRLQRIAYEASKQCGRGKIPGVMPFTDFKSAVNSIDSDTLPIIFYECGGKKLSE 196

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L        +A+ IG EGG+  EE +   S    T + LG RILR +TA VAA+A++ 
Sbjct: 197 LDLS----YKKIAVFIGSEGGFEKEEVDYALSKG-ATAVHLGERILRCETAPVAALAVLM 251

Query: 239 AICG 242
            + G
Sbjct: 252 NLTG 255


>gi|323440475|gb|EGA98187.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           O11]
          Length = 250

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  ITVDLKEKQNINTELPVDVTICSGLIKGDKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           +  +   
Sbjct: 239 LGAISYE 245


>gi|88798495|ref|ZP_01114079.1| hypothetical protein MED297_05539 [Reinekea sp. MED297]
 gi|88778595|gb|EAR09786.1| hypothetical protein MED297_05539 [Reinekea sp. MED297]
          Length = 245

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 15/238 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
           P  I    +     + +L  VLR+K+G +I +FNG+   + ++++ VGK        +  
Sbjct: 13  PGLIDQAVELPSSVFQHLIKVLRLKDGADIQVFNGRGDRFRAELTEVGKKQASARLLEQL 72

Query: 75  SQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
             T +  +      +  K +R DY +QK+ E+G+ +I P+ + +       +     M  
Sbjct: 73  DATPEPQLHTHLGLVMSKGDRFDYALQKATELGVTSITPLTSEHCDLRLNAERQTKKMAH 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +    SA EQC   T+P +YP   L   ++  D + Q++        +   E       
Sbjct: 133 WQGVIESACEQCYRDTVPILYPVRALRDWVEIQDSDVQLILHTAAQAPDWPEE------S 186

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             +V+ LIGPEGG   +E +      F++   LGPRILR++TA V  ++L+Q   GD+
Sbjct: 187 PQSVSFLIGPEGGLSDDEVQWSLKNDFMS-WQLGPRILRTETAPVVMLSLLQNKWGDF 243


>gi|297170744|gb|ADI21766.1| uncharacterized protein conserved in bacteria [uncultured gamma
           proteobacterium HF0130_22O14]
          Length = 246

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 20/253 (7%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+    ++R  VD     K+  + +G+Q HY+  VLR++ GD ++LF+G   EW +KI  
Sbjct: 1   MR-KKRIQRFHVDQIDNSKSHLEIAGEQSHYVTRVLRLQTGDRMILFDGSGSEWTAKIID 59

Query: 61  VGKSIRFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
             K  R  +E + R+   +    ++  I S  ++ R+D ++QKS E+G+  I PV +  T
Sbjct: 60  T-KRNRLLLELEERATPDRESPINLTLIQSISRSQRMDLVMQKSTELGVTRIVPVFSTNT 118

Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADE 170
                       ++  R   ISA+EQ     +P +  P  LE   LK +  +  I    +
Sbjct: 119 IVKMNEDKIEKKINHWRNILISASEQSGRTKIPDLISPIQLETECLKRYKSDLSIF--YD 176

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           T G ++     +   +  ++  +IGPEGG+  +EK+      ++   S GPR+LR++TA 
Sbjct: 177 TTGKDS-----YDANNPKDITAVIGPEGGFTEDEKQIAIDAGYMVMQS-GPRLLRTETAP 230

Query: 231 VAAMALVQAICGD 243
           + A++++Q + GD
Sbjct: 231 IMALSILQYLYGD 243


>gi|332293484|ref|YP_004432093.1| protein of unknown function DUF558 [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171570|gb|AEE20825.1| protein of unknown function DUF558 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 234

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 6/230 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  + +             D+  ++  VLR K GD I L NG    + + ++       
Sbjct: 1   MQLFYSETLTIDSDTYTLPKDESKHVIRVLRKKTGDAIHLTNGHGYLFNAIVAEENPNKC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           R ++E  S  + +   +    +P K  +R ++ ++K+ E+G+  I P++  +++      
Sbjct: 61  RLQIESYSYQEPRNYKLHLAVAPTKLNDRFEWFLEKATEIGITEITPLLCDHSERKVIKE 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R      SA +Q     LP +   T+    + + +H    +   E    E+  + L   
Sbjct: 121 ERFMKIIQSAMKQSLHYHLPKMNALTSFSDFVGHQNHEDTFIAHCEDLKKESLKDYL--- 177

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               +  ILIGPEG +   E E       + P+SLG   LR++TAA+ A 
Sbjct: 178 KPNKSYTILIGPEGDFSPAEIELALKQG-IIPVSLGKSRLRTETAAIVAC 226


>gi|167754795|ref|ZP_02426922.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402]
 gi|237735918|ref|ZP_04566399.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705627|gb|EDS20206.1| hypothetical protein CLORAM_00299 [Clostridium ramosum DSM 1402]
 gi|229381663|gb|EEO31754.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 245

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 9/241 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  L  K Q     D  H++  V+R   GD I+  +     +   I  +   + 
Sbjct: 1   MQRYFINEDLTSKQQLILPDDDLHHVKKVMRNINGDEIICIDNAGQVYYGVIEDIEIGLV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
              +    +     ++  +++  K ++ + ++QK+ E+G+  I P+ T+        Q  
Sbjct: 61  KIDKRLEENNELDVEITLVYALPKGDKFELVLQKATELGVKRIVPIQTKRCVVKMDEQKF 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--SL 178
              + R R     AAEQ     +P I     LE L +    +  + F +     E+    
Sbjct: 121 AKKITRYRKILKEAAEQSWRNFIPEITNVIKLEQLDQYLGDHNLVAFEELAKQGEHMVLK 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L  ++    + I++G EGG+  +E E ++ L  +   SLG RILRS+TA +  ++++ 
Sbjct: 181 QTLDQLSSGDKITIVVGSEGGFELDEIEMMNKLG-IKACSLGKRILRSETAPLYFLSVIG 239

Query: 239 A 239
            
Sbjct: 240 Y 240


>gi|154504512|ref|ZP_02041250.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149]
 gi|153794994|gb|EDN77414.1| hypothetical protein RUMGNA_02016 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++  FV             G   +++ HVLRMK G+ + + +  + ++L +I  +  + +
Sbjct: 1   MQNFFVYDSQVQGENIYIEGTDVNHIVHVLRMKVGEEVSVHDDVNRKYLCRIEKLLEERV 60

Query: 66  RFKVEYQSRSQTKQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +  Q  S T+ S   Y      K ++++++IQK VE+G+ AI PV T+        +
Sbjct: 61  VLSIVEQQESDTELSCPIYLFQGLPKGDKMEWIIQKCVELGVHAIVPVATKRAVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                ++R      SAA+Q     +P + P    +  L+     + +++  ++  G   +
Sbjct: 121 KAQKKVNRWNAIAESAAKQSGRGIVPEVLPVMKWKEALEYARQLDVKMIPYEKAAGINAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + + +++   +V I IGPEGG+   E E    +  V P++LG RILR++TA +  ++++
Sbjct: 181 KQLIASVSFGQSVGIFIGPEGGFEEAEVEAAKEIGAV-PVTLGRRILRTETAGMTILSIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MYHL 243


>gi|327440958|dbj|BAK17323.1| uncharacterized protein [Solibacillus silvestris StLB046]
          Length = 247

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD           SG+   +++ V+RM  G+ I++ +  +  ++ +I  + + +R
Sbjct: 1   MQRYFVDTVEKDMDHFIISGENARHISKVMRMTAGEEIIVVH-DNVAYVCEIIELDQDVR 59

Query: 67  FKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            K    +  S      V       K ++L+ + QK+ E+GM A+ P     +      + 
Sbjct: 60  VKKTGTTIPSPEMPVQVDIACGLPKGDKLELIAQKATELGMHALIPFAAERSIVKWDDKK 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL- 178
              N +R++  +  AAEQ     +P +  P + + L++ + +   +  ADE      +  
Sbjct: 120 AKKNQERLQKISQEAAEQSHRTYVPDVVQPISFKQLVQTFSNYDAVYIADEEDAKLANRT 179

Query: 179 ---EKLHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              +KL ++     P +  + GPEGG    E          T +SLGPRILR++TA + A
Sbjct: 180 TFKQKLQSLNKENTPRILCIFGPEGGISRHESAVFLEAGAQT-MSLGPRILRAETAPLYA 238

Query: 234 MALVQAIC 241
           ++ +    
Sbjct: 239 LSAISYEF 246


>gi|221140003|ref|ZP_03564496.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|269941067|emb|CBI49451.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302751407|gb|ADL65584.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329314253|gb|AEB88666.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 250

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKAAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|295092931|emb|CBK82022.1| RNA methyltransferase, RsmE family [Coprococcus sp. ART55/1]
          Length = 252

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           + R FVD     I T    +G   +++ +VLR+K G  I + NG+  ++   IS +G+  
Sbjct: 1   MNRFFVDVDGRDIGTDISITGGDVNHIKNVLRLKVGQEITVSNGRGRDYTCSISELGRDE 60

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--- 120
           +   VE  + +      +V       K++++D ++QK VE+G+  I PV T  T      
Sbjct: 61  VLCHVEDVNDNFAELPVEVTLFQGYPKSDKMDLIVQKMVELGVCRIVPVFTARTIVKLDA 120

Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSEN 176
                  +R R    SAA+Q     +P I  P T    ++     +  I+  +E  G   
Sbjct: 121 KKAAKKTERCRIIAESAAKQSGRGIVPEITEPVTFAQAIEMAKTLDMNIIPYEEAEGLAK 180

Query: 177 SLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           S + +  +        ++ + IGPEGG+  EE E   +      ++LG RILR++TA +A
Sbjct: 181 SRQIIADVTAPSSARRSLGVFIGPEGGFAREEVEQAMAAG-AECITLGHRILRTETAGLA 239

Query: 233 AMALVQ 238
            M+++ 
Sbjct: 240 VMSIIM 245


>gi|254515811|ref|ZP_05127871.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR5-3]
 gi|219675533|gb|EED31899.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR5-3]
          Length = 245

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 21/248 (8%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F    L          +   ++A  LRM+  D + LFNG   E    I+ + K  R 
Sbjct: 4   PRFFTAQALSEGASIVLEKEPSRHIAKALRMRVEDTLCLFNGNGVEARGLITAIDKD-RV 62

Query: 68  KVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            V     S+       D   I +  + +R+D ++QK+ E+G+  I P+I+  T      +
Sbjct: 63  SVSLHDLSEPPRESPLDTVLIIALSRGDRMDTVVQKATELGVSEIWPMISERTGVRLDGE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSE 175
                 +      ISA EQC    LP I  P +    L      D + ++V      G+ 
Sbjct: 123 RLSKKQEHWGRVAISACEQCGRNRLPLIAAPVSYAETLSRAAQQDASLRLVLHP--LGNA 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L +        ++ +L+GPEGG   +E        F T   LGPRILR++TA +A +A
Sbjct: 181 EPLPE-----QCRSLIMLVGPEGGLSDQEVAGACDAGF-TAFQLGPRILRTETAPLAGLA 234

Query: 236 LVQAICGD 243
           + QA  GD
Sbjct: 235 VAQARWGD 242


>gi|297539576|ref|YP_003675345.1| hypothetical protein M301_2406 [Methylotenera sp. 301]
 gi|297258923|gb|ADI30768.1| protein of unknown function DUF558 [Methylotenera sp. 301]
          Length = 244

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 12/244 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F    L I    K S +   +    LR+  GD I LFNG   ++  ++  V KS    
Sbjct: 5   RFFSTEDLVIGATVKLSENAATHATRALRLNAGDLIHLFNGDGFDYACELIVVKKSEVIA 64

Query: 69  VE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                Q+R      ++  +      +R+DY IQK+VE+G+  I+P+ T  +      +  
Sbjct: 65  KINASQARDTESPLNITLLQGISSGDRMDYSIQKAVELGVKQIQPIATERSVVKLSAERA 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++  +   ISA EQC   T+P +  P TL   L +   +          G++   E 
Sbjct: 125 EKRLEHWQNIVISACEQCGRATIPQVLAPKTLANWLSSNSASSATRILLNPIGAKRLAEL 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                    + +LIG EGG    E     S  F + + LGPRILR++TA   A+A +Q++
Sbjct: 185 ---DKPSGEIQLLIGAEGGLSQAEINLALSQDFQSVI-LGPRILRTETAGPTAIATLQSL 240

Query: 241 CGDW 244
            GD+
Sbjct: 241 WGDF 244


>gi|293400698|ref|ZP_06644843.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305724|gb|EFE46968.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 258

 Score =  237 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+  PL +    +   +Q H++ HV+RMK  + I L +GK   + + + +    + 
Sbjct: 1   MQQYFLHKPLQVHDLVEMEPEQAHHIQHVMRMKPDEIIRLADGKGHMYYAHVVFRDHKVF 60

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             V+ +    T+   D+      IK  + D+++QKS E+G+  I P  +  T      + 
Sbjct: 61  ACVDEEMEDHTRTPVDMILAQGLIKKEKWDFLLQKSAELGVQRIIPFTSSRTVVKTKDEK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENS 177
                 R       A EQC   TL  +  P +   L+K  +     + A E     S + 
Sbjct: 121 VDKKRLRWNKILQEACEQCKRSTLVALDSPKSFAELIKASEDADVKLIAYERADVKSAHV 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L        V I++G EGG+  +E   L  + F   +SLG RILR++TAA++ +A +
Sbjct: 181 KEVLQKYPAPHKVFIVVGCEGGFSEDEVIQLEEVGF-HRVSLGARILRAETAALSLLACI 239

Query: 238 Q 238
            
Sbjct: 240 S 240


>gi|329851437|ref|ZP_08266194.1| RNA methyltransferase, RsmE family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840283|gb|EGF89855.1| RNA methyltransferase, RsmE family protein [Asticcacaulis
           biprosthecum C19]
          Length = 248

 Score =  237 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/248 (35%), Positives = 137/248 (55%), Gaps = 11/248 (4%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           + RLF+     P         + DQ  YLA V+R+   D + +FNG+DGEW +++S VGK
Sbjct: 1   MIRLFISETTPPFAEGLSVILNPDQSRYLAAVMRLSVDDTVSIFNGRDGEWGARLSEVGK 60

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             ++  +  Q+R Q          + IK + L+Y+++K+ E+G G I+ + TR T  +H 
Sbjct: 61  KAVKLDLIEQTRPQPTGQGPILAVALIKRSALEYIVEKATELGAGTIQLLTTRRTNASHT 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----- 177
           N++R+ +    +AEQ + L +P I  P  L+  L       +++F DE    E +     
Sbjct: 121 NVERLVSIAKESAEQTERLDVPEILAPVKLDRFLAAA-AFDRLIFGDENSTHEGTRETLP 179

Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ L   A +    ILIGPEGG+  +E+  L   P   P++LGPRILR+DTAA++A+ L
Sbjct: 180 LLQALKTTAAVERSVILIGPEGGFDDDERLALRGRPDCIPVNLGPRILRADTAAISALTL 239

Query: 237 VQAICGDW 244
            QA+ GDW
Sbjct: 240 YQAVVGDW 247


>gi|269469135|gb|EEZ80680.1| hypothetical protein Sup05_0073 [uncultured SUP05 cluster
           bacterium]
          Length = 238

 Score =  237 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 15/241 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+ +  L +           H+L  VLR  +G NI LFNG    + +K+    K     
Sbjct: 5   RLYQNTLLKVGDHLILDEYCSHHLIKVLRFPQGKNITLFNGDGINYSAKVISSKKKCEVL 64

Query: 69  VEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +  + ++ ++   ++       K  ++D++IQK+VE+G+  I P+++ +       +   
Sbjct: 65  ILTKEQNLSESKLNLTLAQGIAKGEKMDFLIQKAVELGVNKIVPIMSEHCVVKLKGEKLT 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
                 +     A EQ     +P +  P TL   L     N  I+          S + L
Sbjct: 125 KRQLHWQKIVFGACEQSGRSIVPNVETPITLNDFLDQTTTNGFILHH-------RSTQTL 177

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             + H+    ILIGPEGG   +E E   S  +   L LG R+LR++TA++ A+A +Q + 
Sbjct: 178 LELEHMNEATILIGPEGGLSEKEIEQATSSGY-QSLLLGSRVLRTETASLVAIANMQLLW 236

Query: 242 G 242
           G
Sbjct: 237 G 237


>gi|21283258|ref|NP_646346.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49486412|ref|YP_043633.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|21204698|dbj|BAB95394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244855|emb|CAG43316.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|329733247|gb|EGG69584.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 250

 Score =  237 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   K
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|57651970|ref|YP_186474.1| hypothetical protein SACOL1634 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161276|ref|YP_494232.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195386|ref|YP_500190.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221692|ref|YP_001332514.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|258450594|ref|ZP_05698656.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262049150|ref|ZP_06022027.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30]
 gi|262051237|ref|ZP_06023461.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3]
 gi|282920126|ref|ZP_06327851.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           A9765]
 gi|284024636|ref|ZP_06379034.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus 132]
 gi|57286156|gb|AAW38250.1| conserved hypothetical protein TIGR00046 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127250|gb|ABD21764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202944|gb|ABD30754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374492|dbj|BAF67752.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|257861752|gb|EEV84551.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259160874|gb|EEW45894.1| hypothetical protein SA930_1668 [Staphylococcus aureus 930918-3]
 gi|259162819|gb|EEW47384.1| hypothetical protein SAD30_0307 [Staphylococcus aureus D30]
 gi|282594474|gb|EFB99459.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           A9765]
 gi|315198727|gb|EFU29055.1| hypothetical protein CGSSa01_09404 [Staphylococcus aureus subsp.
           aureus CGS01]
          Length = 250

 Score =  237 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|83309343|ref|YP_419607.1| 16S ribosomal RNA methyltransferase RsmE [Magnetospirillum
           magneticum AMB-1]
 gi|82944184|dbj|BAE49048.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
          Length = 252

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 2/218 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFV+ PL        + DQ HYLA V+R   G+ +LLFNG+DGEWL++I+ + K+    
Sbjct: 11  RLFVEAPLSAGMAVALTRDQTHYLASVMRAAVGELVLLFNGRDGEWLARIAALAKAGAAL 70

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V E Q+R Q  + D+  + +P+K +R D +++K+ E+G+  + PV TR T     N DR+
Sbjct: 71  VPESQTRPQAPEPDLWLLAAPLKKDRTDLVVEKAAELGVSRLWPVFTRRTNAGRVNADRL 130

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             + + AAEQC+ LT+P +  P  L+ +L  W     ++F DE  G     E L+ ++  
Sbjct: 131 HAHLVEAAEQCERLTVPDLAEPAALDKVLAGWPAERVLLFLDEGGGGVPLAEVLNGLS-G 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +A+L+GPEGG+  EE+  + S PF   + LGPRILR
Sbjct: 190 QKLALLVGPEGGFDGEERRLIASRPFARAVGLGPRILR 227


>gi|82751180|ref|YP_416921.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           RF122]
 gi|82656711|emb|CAI81138.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 250

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   K
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q+ +     DV      IK ++ ++++QK+ E+G  +   V   ++      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMEHSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|238561245|ref|ZP_00442303.2| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse
           4]
 gi|121227903|gb|ABM50421.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei
           SAVP1]
 gi|126242088|gb|ABO05181.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10247]
 gi|238524927|gb|EEP88357.1| RNA methyltransferase, RsmE family [Burkholderia mallei GB8 horse
           4]
          Length = 246

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 18/235 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K   
Sbjct: 1   MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRGA 59

Query: 67  FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 ++         V         +++D++I+K+VE+G+ A+ P+ T         +
Sbjct: 60  LARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                +   R    ++ EQC    LP I P    +  L        D   +++ +     
Sbjct: 120 RADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRLLLSPRASV 179

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                  L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 180 ---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 230


>gi|282916847|ref|ZP_06324605.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus D139]
 gi|283770653|ref|ZP_06343545.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319334|gb|EFB49686.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460800|gb|EFC07890.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus H19]
          Length = 250

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   K
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNNQTVYLCEIADITSDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|217964384|ref|YP_002350062.1| protein YqeU [Listeria monocytogenes HCC23]
 gi|217333654|gb|ACK39448.1| protein YqeU [Listeria monocytogenes HCC23]
 gi|307571051|emb|CAR84230.1| conserved hypothetical protein [Listeria monocytogenes L99]
          Length = 255

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTNELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
                V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     A EQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEATEQSHRTVIPEVHYAASFKELMYDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLHLQEVN-AKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|290894231|ref|ZP_06557200.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556228|gb|EFD89773.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 255

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTNELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
                V++         ++       K ++L+ +IQKS E+G     P      V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVITAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLHLQEVN-AKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|15924567|ref|NP_372101.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927157|ref|NP_374690.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus N315]
 gi|148268061|ref|YP_001247004.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394129|ref|YP_001316804.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156979895|ref|YP_001442154.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253316052|ref|ZP_04839265.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006363|ref|ZP_05144964.2| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793653|ref|ZP_05642632.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258411047|ref|ZP_05681327.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258420149|ref|ZP_05683104.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258437409|ref|ZP_05689393.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258443615|ref|ZP_05691954.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446822|ref|ZP_05694976.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448736|ref|ZP_05696848.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258453553|ref|ZP_05701531.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269203205|ref|YP_003282474.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282893078|ref|ZP_06301312.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8117]
 gi|282928210|ref|ZP_06335815.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A10102]
 gi|296275801|ref|ZP_06858308.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MR1]
 gi|13701375|dbj|BAB42669.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247348|dbj|BAB57739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741130|gb|ABQ49428.1| protein of unknown function DUF558 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946581|gb|ABR52517.1| protein of unknown function DUF558 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722030|dbj|BAF78447.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257787625|gb|EEV25965.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257840197|gb|EEV64661.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257843860|gb|EEV68254.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257848614|gb|EEV72602.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851021|gb|EEV74964.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854397|gb|EEV77346.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858014|gb|EEV80903.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257864284|gb|EEV87034.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262075495|gb|ACY11468.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590017|gb|EFB95099.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A10102]
 gi|282764396|gb|EFC04522.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8117]
 gi|285817259|gb|ADC37746.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus 04-02981]
 gi|312829965|emb|CBX34807.1| RNA methyltransferase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129856|gb|EFT85846.1| hypothetical protein CGSSa03_02183 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727099|gb|EGG63555.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 250

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   K
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|220929216|ref|YP_002506125.1| hypothetical protein Ccel_1795 [Clostridium cellulolyticum H10]
 gi|219999544|gb|ACL76145.1| protein of unknown function DUF558 [Clostridium cellulolyticum H10]
          Length = 245

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 11/239 (4%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEY 71
                  +     + + +L  VLR +  D + +  G   ++  +I  +  S  +    + 
Sbjct: 3   ESQIGDGRVNIIEEDFQHLKKVLRAQIKDELTVCCG-GFDYTVEIEEIKNSSIVCVITDI 61

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNM 124
                     V       K+++++ +IQK VE+G+  I PV+T          ++    +
Sbjct: 62  NKNYTESSLKVTLFQGLPKSDKMELIIQKCVELGVWEIVPVMTERCVSRINTDKDAQNKL 121

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            R +     AA+QC+   +P I+ P T +  ++        V   E   +      +   
Sbjct: 122 ARWQKIAREAAKQCNRGIIPNIHYPITFKEAVEMASQAELSVIPYEKESAVGLKNVVARY 181

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             I + +I+IGPEGG+  +E +       V  +SLGPRILR++TA + +++L+    GD
Sbjct: 182 QGITSGSIIIGPEGGFEEKEVKMAEDRG-VKKISLGPRILRTETAGMVSLSLMMYELGD 239


>gi|288555682|ref|YP_003427617.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4]
 gi|288546842|gb|ADC50725.1| RNA methyltransferase, RsmE [Bacillus pseudofirmus OF4]
          Length = 250

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++R FV       +    +GD   ++A V+RM+EG+ I++ N      L+K+  + +S I
Sbjct: 1   MQRYFVSEDQLNGSIVTITGDDVKHIARVMRMQEGEEIIVSNNAGRTVLAKLKKLSESDI 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
           + +V  +   +T+    V       K ++L+ + QK  E+G+   +P     +       
Sbjct: 61  QAEVLEELDPKTELPIKVTVAQGLPKGDKLELITQKGTELGVSCFQPFQASRSIVKWDMK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R+      AAEQ     +P I    +   LL+  +     + A E        
Sbjct: 121 KAKKKVERLEKIAKEAAEQSYREIIPTIKEAASFTQLLETIESYTHTIVAYEESAKTGEA 180

Query: 179 EKLH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             LH     +    +V I+IGPEGG   EE   L     V    LGPRI+R++TA +  M
Sbjct: 181 SNLHNVLNQVKSGDSVLIVIGPEGGLTEEEVSALEGKGAVL-CGLGPRIIRTETAPLYVM 239

Query: 235 ALVQAIC 241
           A +    
Sbjct: 240 AAISYHL 246


>gi|186477349|ref|YP_001858819.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phymatum
           STM815]
 gi|184193808|gb|ACC71773.1| protein of unknown function DUF558 [Burkholderia phymatum STM815]
          Length = 251

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 19/257 (7%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+    + R FV  P           +   +   VLR++ GD + LFNG  GE+ ++I  
Sbjct: 1   MRT-FLMPRFFVGTPFKTDDIVSLPDEVNRH-VRVLRLQPGDTVSLFNGDGGEYGAEIVD 58

Query: 61  VGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           + +   I   V ++         +        ++++D++I+K+ E+G     P+ T  + 
Sbjct: 59  MDRHGTIVRIVGFRDIECEPPYRLTLAQGIAGSDKMDWLIEKATELGACEFVPLTTTRSV 118

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVF 167
                +         +    ++ EQC    LP + P   L   L        D   +++ 
Sbjct: 119 VRLAGERAQRRQVHWQRIVQASCEQCGRNRLPQVMPTRELATWLSTMPKEPVDGELRLLL 178

Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           +            L          +L+GPEGG+ + E+    +  F T + LGPR+LR++
Sbjct: 179 SPRASV---PFSALPVEPPKVRALVLVGPEGGFSAAEEAAAAAHGF-TAVGLGPRVLRTE 234

Query: 228 TAAVAAMALVQAICGDW 244
           TA +A ++ + A  G W
Sbjct: 235 TAGIAVLSALAARWGGW 251


>gi|207721568|ref|YP_002252007.1| hypothetical protein RSMK01827 [Ralstonia solanacearum MolK2]
 gi|206586729|emb|CAQ17314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 249

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R ++D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +   
Sbjct: 3   LPRFYIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINRRDA 61

Query: 66  RFKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   ++  T+   V          +++D++I+K+VE+G+ AI P+ T         +
Sbjct: 62  TASLADATQPDTEARYVITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176
                +   +    +A EQC    +P + P TTL   L     +   +++ +     S  
Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTAAKASGRARVMLSPRGSQSLT 181

Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                         + +LIGPEGG   +E+    +  ++ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|167825846|ref|ZP_02457317.1| hypothetical protein Bpseu9_19397 [Burkholderia pseudomallei 9]
          Length = 251

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 18/239 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 195

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA 
Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTETAG 250


>gi|49483825|ref|YP_041049.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257425702|ref|ZP_05602126.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428363|ref|ZP_05604761.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431000|ref|ZP_05607380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433688|ref|ZP_05610046.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436602|ref|ZP_05612646.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904159|ref|ZP_06312047.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905986|ref|ZP_06313841.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908896|ref|ZP_06316714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911215|ref|ZP_06319017.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914384|ref|ZP_06322170.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919353|ref|ZP_06327088.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924678|ref|ZP_06332346.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958341|ref|ZP_06375792.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503458|ref|ZP_06667305.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510475|ref|ZP_06669181.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293531015|ref|ZP_06671697.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428155|ref|ZP_06820787.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|49241954|emb|CAG40649.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271396|gb|EEV03542.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275204|gb|EEV06691.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278430|gb|EEV09066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281781|gb|EEV11918.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283953|gb|EEV14076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313513|gb|EFB43908.1| hypothetical protein SARG_02226 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317163|gb|EFB47537.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus C427]
 gi|282321565|gb|EFB51890.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324910|gb|EFB55220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327160|gb|EFB57455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331278|gb|EFB60792.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595777|gb|EFC00741.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790490|gb|EFC29307.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920283|gb|EFD97349.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095124|gb|EFE25389.1| hypothetical protein SCAG_01980 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466839|gb|EFF09359.1| 16S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128513|gb|EFG58147.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|315195480|gb|EFU25867.1| hypothetical protein CGSSa00_07415 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 250

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   K
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|315652517|ref|ZP_07905501.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485233|gb|EFU75631.1| RsmE family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 245

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +   FV+           SG   +++ +VLRMK G+ +L+    D ++L KI  +    +
Sbjct: 1   MYHFFVEEEQVNGENAYISGSDVNHIVNVLRMKIGEELLISVKGDWDYLCKIEEIENDRV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             K+      +     +  +    K+++++ +IQK++E+G+  I PV T         + 
Sbjct: 61  NLKLLESMEQRELPIKLTLLQGIPKSDKIEMIIQKAIELGVSEIIPVKTNRVVVRIDKKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178
           T   ++R      SAA+Q     +P +  P TL+  L+   D+  +++  +   G + + 
Sbjct: 121 TQAKVNRWNAIAQSAAKQSKRSIIPKVLNPQTLDNALEIVKDYGVKLLPYENADGIKKTK 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L+++    N+A+ IGPEGG+   E +      F   ++LG RILR++TA +A ++ + 
Sbjct: 181 DILNSLNSKNNIAVFIGPEGGFEEAEVKKSTDSGF-EVITLGKRILRTETAGLALLSNIM 239

Query: 239 AIC 241
              
Sbjct: 240 IRL 242


>gi|291529135|emb|CBK94721.1| RNA methyltransferase, RsmE family [Eubacterium rectale M104/1]
          Length = 246

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 111/240 (46%), Gaps = 9/240 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + + FV+           +G   +++ +VLRMK G+ I + +     +   IS +    +
Sbjct: 1   MYQFFVEEEQVHSDSISITGGDVNHIKNVLRMKNGEKIRVSSKSGQAYFCHISSILDDEV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
              ++    + T+    +       K ++++ +IQK+VE+G+  I PV  +       + 
Sbjct: 61  IAAIDSADETGTELDNHIVLYQGLPKGDKMELIIQKAVELGVSEIVPVAMKNCVVKLDDK 120

Query: 125 ------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENS 177
                  R +    SAA+Q     +P +  P T +  LK   + +  +V  +   G + +
Sbjct: 121 KAAKKLQRWQAIAESAAKQSKRTVIPTVNQPVTYKEALKIASELDITLVPYENERGMDAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E +  +     + +++GPEGG+  EE   +     +  +SLG RILR++TA +AA+A++
Sbjct: 181 REIMGQLKAGQTIGVVVGPEGGFAPEEIALVDEHATMHRISLGRRILRTETAGLAALAML 240


>gi|222151476|ref|YP_002560632.1| hypothetical protein MCCL_1229 [Macrococcus caseolyticus JCSC5402]
 gi|222120601|dbj|BAH17936.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 245

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F+D    I    + SG D  H++ +V+R + GD +++ N  +   + +I  +   I
Sbjct: 1   MQRYFLDVKSVINETYQISGKDDVHHIKNVMRQQTGDKVIV-NFTNATMICEIIDIQTEI 59

Query: 66  RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K +E           V      +K ++ ++MIQK+ E+G  +  P ++  T      +
Sbjct: 60  TVKPIEDIDILTEMPVSVTIASGLLKNDKYEWMIQKATELGATSFIPFVSERTIVKVDEK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R       AAEQ     +P I    + + L K  +    ++ A E       +
Sbjct: 120 KFQKKVERFTKIVKEAAEQSYRQIVPSIEFVASGKALAKKLEAFDHVLIAYEETAKSGEI 179

Query: 179 ----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               E L  + H   V ++ GPEGG    E            + LGPRILR++TA + A+
Sbjct: 180 KRFTEALQDVKHGDKVCVIFGPEGGLSEAEVAQF----GSKVIGLGPRILRAETAPLYAL 235

Query: 235 ALVQAIC 241
           + +    
Sbjct: 236 SAMSFHF 242


>gi|283470856|emb|CAQ50067.1| protein YqeU [Staphylococcus aureus subsp. aureus ST398]
          Length = 250

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +++ +   K
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEVADITSDK 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|77163661|ref|YP_342186.1| hypothetical protein Noc_0123 [Nitrosococcus oceani ATCC 19707]
 gi|254435009|ref|ZP_05048516.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani
           AFC27]
 gi|76881975|gb|ABA56656.1| 16S rRNA m(3)U-1498 methyltransferase [Nitrosococcus oceani ATCC
           19707]
 gi|207088120|gb|EDZ65392.1| conserved hypothetical protein TIGR00046 [Nitrosococcus oceani
           AFC27]
          Length = 243

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L I +          Y+  VLR++ G  + LF+G+  E+ + +  + K  
Sbjct: 2   RVPRVYFPLSLSIGSSVSLDERALQYVIRVLRLRLGAQLRLFDGRGAEYQAVLETIEKRA 61

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +E           +       +  R+DY +QK+VE+G+  I P++T  +      
Sbjct: 62  VKVRILERIEHHVESPLHIILGQGISRGERMDYALQKAVELGVSRIIPLLTERSAVNLSA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   +   ISA EQC    +P +  P  L   L++ DH    V  D    S   
Sbjct: 122 ERAEKRLRHWQGVIISACEQCGRNYIPPVDTPRPLADFLRD-DHRGLAVLLD--PRSRRP 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L+ L  +     + +LIGPEGG +  E +      F+  + LGPRILR++TA VAA+  +
Sbjct: 179 LKALP-LPLDNRLIVLIGPEGGLNKGEAKQAQQADFI-GVCLGPRILRTETATVAALTAL 236

Query: 238 QAICGD 243
           Q + GD
Sbjct: 237 QLLWGD 242


>gi|302333253|gb|ADL23446.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 250

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDQ 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|332971497|gb|EGK10447.1| 16S rRNA methyltransferase RsmE [Kingella kingae ATCC 23330]
          Length = 240

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L    +         ++  VLR+  GD+++LF+G+     + ++ +GK   
Sbjct: 1   MPRFYLPN-LPDAGELNLPDCIVRHI-QVLRLNVGDDLILFDGRGKRVHATLTELGKRKA 58

Query: 67  FKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 +     +S   +  + +     R+D+ IQKSVE+G+ +I P+ +         +
Sbjct: 59  ACTLAPTEQINSESALSIHLLQAISSGERMDFTIQKSVELGVASITPIWSERCVVKLQGE 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   ISA EQC    +P + P    +  +K        +       S    
Sbjct: 119 RADKRVQRWQDIAISACEQCGRDIVPEVRPIVRFDDYIKQMPREQLHLLM-----SLQQA 173

Query: 179 EKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + L A+   P  V ++IGPEGG+ + E++      F   + LG R+LR++TA++AA+A +
Sbjct: 174 KSLQAMQPAPQTVYLMIGPEGGWTAAEEQAALDAGFQAIV-LGKRVLRTETASLAAIAAM 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QTLWGDF 239


>gi|319400913|gb|EFV89132.1| RNA methyltransferase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 250

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F++              + YH++ +V+R KEG NI++    +  +  KI  +  +S
Sbjct: 1   MQRYFMNQSADENQCFFIENKEDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQS 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           I  K+E + +  T+   ++      IK ++ ++MIQK+ EMG      V    +      
Sbjct: 61  IEIKLEEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLND 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + R +     AAEQ   LT+P I   + L+ +    +    ++ A E       
Sbjct: 121 SKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMINQYDYVLIAYEEQAKHGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + +        V I+ GPEGG    E      +   T + LGPRILR++TA + A
Sbjct: 181 LSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEIALFDDVS--TIVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ V   
Sbjct: 239 LSAVSYE 245


>gi|302671977|ref|YP_003831937.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316]
 gi|302396450|gb|ADL35355.1| hypothetical protein bpr_I2622 [Butyrivibrio proteoclasticus B316]
          Length = 250

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 7   LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLF---NGKDGEWLSKISYV 61
           +   FV+           + +G+ Y+++A+VLRM++G+   +    + +  E   +I  +
Sbjct: 1   MYHFFVESSQVTPDFKTVEITGNDYNHIANVLRMQKGEQFSVSIRDDDEGKEIFYEIEDI 60

Query: 62  GKSIRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117
             S         +       S +       K ++++ +IQK+VE+G   I P+ T+    
Sbjct: 61  TDSSVIGHLCFIEKVGNELPSKIYLFQGLPKVDKMELIIQKAVELGAFQIVPMSTKRCVV 120

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETC 172
               +     + R +  + +AA+Q     +P +  P T++  ++   D + +I+  +   
Sbjct: 121 KLDDKKAENKIKRWQAISEAAAKQSKRAIIPEVTMPMTMKQAVEFAKDMDVKIIPYENAK 180

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           G E +   +  I    N+A+ IGPEGG+  +E +       + P++LG RILR++TA   
Sbjct: 181 GIEETKRIIENIKPGQNIAVFIGPEGGFSEQEIDLCREND-IMPITLGKRILRTETAGFT 239

Query: 233 AMALVQAIC 241
            ++ +    
Sbjct: 240 IISWLMYHL 248


>gi|167586100|ref|ZP_02378488.1| hypothetical protein BuboB_12224 [Burkholderia ubonensis Bu]
          Length = 255

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD ++LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVEAALSAGAVLALPADVARH-AQVLRLQPGDALVLFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ AI P+ T        
Sbjct: 67  SAVAQLDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAIAPLSTSRGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P    +  L        D   +++ +   
Sbjct: 127 GERAEKRVAHWRGIVRASCEQCGRNRVPDVAPVRGFDAWLDALPAARADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L       +V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 SM---PFASLPDAPPAASVTLLIGPEGGLSPDEEHAARTHGF-TALSLGPRVLRTET 239


>gi|311031620|ref|ZP_07709710.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus sp. m3-13]
          Length = 253

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 17/254 (6%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKIS 59
           MKI   ++R FV+     ++    +G+  H++  V+RM E D +L    +  +  L KI+
Sbjct: 1   MKI---VQRYFVNSNQIDESSISITGEDVHHITRVMRMNEDDQLLCSCSETRQTALCKIA 57

Query: 60  YVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
            +   +     VE+          V       K ++L+ +IQK  E+G  +  P     +
Sbjct: 58  EITNDMVVTDIVEWIKAETEIPVRVSIANGLPKGDKLELVIQKGTELGAESFIPFNAARS 117

Query: 118 QNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171
                       ++R       AAEQ     +P +  P TL  LL+        + A E 
Sbjct: 118 IVKWDEKKGKKKVERWNKIAKEAAEQSHRSMVPVVEEPATLAQLLEKSRDYTYKIVAYEE 177

Query: 172 CGSENS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
              E         L  +    ++  + GPEGG   +E + L    FV P +LGPRILR++
Sbjct: 178 SAKEGESSAFANTLKNMKPGESILCVFGPEGGLAQKEIDKLVEHGFV-PCALGPRILRTE 236

Query: 228 TAAVAAMALVQAIC 241
           TA +  +A +    
Sbjct: 237 TAPLYVLAAISYHF 250


>gi|206561729|ref|YP_002232494.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
           J2315]
 gi|198037771|emb|CAR53715.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 246

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FVD  L          D   +   VLR++ GD + LF+G  G++ +++  V K S 
Sbjct: 1   MPRFFVDAALRADATLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKRSA 59

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +V+ ++         V         +++D++I+K+VE+G+ A+ P+ T         +
Sbjct: 60  LVQVDSFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                +   R    ++ EQC    +P + P       L        D   +++ +     
Sbjct: 120 RADKRVAHWRGVVRASCEQCGRNRVPDVAPVIGFSAWLDALPAAPADGELRLLLSPRAS- 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                  L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 179 --IPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARARGF-TALSLGPRVLRTET 230


>gi|91978577|ref|YP_571236.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris BisB5]
 gi|91685033|gb|ABE41335.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           BisB5]
          Length = 251

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/230 (39%), Positives = 130/230 (56%), Gaps = 3/230 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RLFVD  L    +     DQ +YL +VLR+  G  +L FNG+DGEW + I+  
Sbjct: 3   RYDFRSPRLFVDAALAPGARVPLDRDQSNYLGNVLRLGAGAPVLTFNGRDGEWRAAIAGR 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +    +V  Q+R Q +  D+ Y+F+P+K +RLDYM QK+VEMG G ++PV+TR+TQ   
Sbjct: 63  KRPEELEVTDQTRPQDRLPDLTYVFAPLKHSRLDYMTQKAVEMGAGRLQPVLTRHTQVHR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEK 180
            N DR+R   I AAEQC IL++  +     LE  L    D    + F DE     + +  
Sbjct: 123 LNTDRMRANAIEAAEQCGILSVAAVEESIALERWLAARADGGRLLAFCDEDAEIADPVAA 182

Query: 181 LHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L          + +L+GPEGG+ +EE+E L   P +  L+LGPRI+R+DT
Sbjct: 183 LQGARATAAQGIDLLVGPEGGFSNEERELLLRQPNILRLALGPRIMRADT 232


>gi|326561136|gb|EGE11501.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 7169]
          Length = 247

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 18/242 (7%)

Query: 7   LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL    I           H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118
           KS   K++ Y   ++T            + +R+DY IQK+ EMG+  I  + +   Q   
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120

Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +   ++  ++A EQC +  +P I  P  L+  + N     ++V A     SE
Sbjct: 121 KYDRDFKKIAHWQSVAVAACEQCGMNIVPNIIAPILLDEWVANCQDELKLVLA----LSE 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           N+    + I    N+++LIG EGG    E +      FV P  +G R+LR++TA V A++
Sbjct: 177 NN-PAFNKILP-KNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVVALS 233

Query: 236 LV 237
            +
Sbjct: 234 AL 235


>gi|296444351|ref|ZP_06886316.1| protein of unknown function DUF558 [Methylosinus trichosporium
           OB3b]
 gi|296257998|gb|EFH05060.1| protein of unknown function DUF558 [Methylosinus trichosporium
           OB3b]
          Length = 247

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 1/219 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           +RLFVD  L    +    GD+ +YL +VLR++EGD +LLFNG+DGEWL+++  V + S  
Sbjct: 9   QRLFVDERLEAGARMIPDGDRLNYLLNVLRLREGDGVLLFNGRDGEWLARLEKVTRRSAE 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                ++R QT   D+ Y F+P+K  RLDYM QK+ EMG   + P+ITR TQ    N+ R
Sbjct: 69  LVATTRAREQTAPCDLHYCFAPLKHARLDYMAQKATEMGASRLVPIITRRTQARRVNLTR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   I AAEQC +L +P +    +L+  L     +  +VF DE     + +  L A   
Sbjct: 129 LRANAIEAAEQCGVLGVPEVAEEVSLDAFLAGLCASRLLVFCDEAAEIADPVAALRAAPE 188

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              +A++IGPEGG+  EE+  + S   V  L+LGPRILR
Sbjct: 189 HEGIAVIIGPEGGFDEEERRAILSAGKVARLALGPRILR 227


>gi|313200262|ref|YP_004038920.1| hypothetical protein MPQ_0502 [Methylovorus sp. MP688]
 gi|312439578|gb|ADQ83684.1| conserved hypothetical protein [Methylovorus sp. MP688]
          Length = 243

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 13/245 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D PL   +         ++   VLR++ GD + LFNG   ++ ++I  + K+   
Sbjct: 4   PRFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDALRLFNGDGHDYSAEIETIRKNEVI 63

Query: 68  KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
               Q  + S   +  +         +R+D+ IQKSVE+G+  I+P+ ++ +        
Sbjct: 64  VKTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHTIQPISSQRSVVKLSGDR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +  +   ISA EQ     LP +   T+L   L +       +  D    +   L+
Sbjct: 124 ADKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQ 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L        + +LIGPEGG  SEE     S  F T + LGPRILR++TAA+AA+A +  
Sbjct: 182 DLP--LPQGPICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINT 238

Query: 240 ICGDW 244
           + GD+
Sbjct: 239 VWGDF 243


>gi|229597247|ref|YP_001897009.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia phytofirmans
           PsJN]
          Length = 251

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV  PL  +       D   ++  VLR++ GD+I+LFNG+ GE+ +++  V + S 
Sbjct: 6   MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 64

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+ E++         +         +++D++I+K+VE+G  +  P+ T  +       
Sbjct: 65  MVKIREFRDIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGD 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                    +    ++ EQC    LP + P   +   L +      + + +I+ +     
Sbjct: 125 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSPRAS- 183

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              S   L +      V +L+GPEGG+ + E+    +  F T + LGPR++R++TA +A 
Sbjct: 184 --ISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETAGIAV 240

Query: 234 MALVQAICGDW 244
           ++ + A  G W
Sbjct: 241 LSALAAGWGGW 251


>gi|328474981|gb|EGF45775.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           220]
          Length = 255

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++  V+RMKE D + +        ++ I+ +    
Sbjct: 1   MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFPSKKTCIAAITAINDDE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYT 117
            F   V++         ++       K ++L+ +IQK  E+G     P      V+    
Sbjct: 61  VFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKRTELGAHKFIPYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L      +    +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEVN-AKLAGLGPRILRTETAPLYC 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|182418451|ref|ZP_02949745.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666873|ref|ZP_04526858.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377833|gb|EDT75377.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237658072|gb|EEP55627.1| conserved surface protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 253

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 14/250 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F +     +  G   G+   ++  VLR+ EG+ I+L N +  E+L KI+ + KS  
Sbjct: 1   MHKFFTEPYNINENVGIIVGEDVKHIYKVLRLSEGEEIILNNCEGIEYLGKINSINKSEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
               ++    +      +       K  ++D ++QK  E+G+    P IT       +  
Sbjct: 61  IVDIIQKLDTNNESDIKIYLFQGLPKGQKMDLIVQKGTELGINEFIPTITDRVDVKLKGE 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------- 173
              +DR+    + A++Q     +P +      E  + N ++   ++   E          
Sbjct: 121 FKKLDRLNRIALEASKQSKRSIIPKVKEVINFEEAMLNLENMDLVIVPYENAENFGVKTL 180

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +   E+   +++I NV I+IGPEGG+  +E + L +      ++LG RILR++TA   A
Sbjct: 181 MKKLREEKEDLSYIHNVGIVIGPEGGFEEDEIKELSNRGAY-IVTLGRRILRTETAGFTA 239

Query: 234 MALVQAICGD 243
            AL+Q    D
Sbjct: 240 TALIQYELSD 249


>gi|260567973|ref|ZP_05838442.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 4 str. 40]
 gi|261753715|ref|ZP_05997424.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 3 str. 686]
 gi|260154638|gb|EEW89719.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 4 str. 40]
 gi|261743468|gb|EEY31394.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella suis
           bv. 3 str. 686]
          Length = 235

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/238 (42%), Positives = 138/238 (57%), Gaps = 22/238 (9%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
                 A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +  +   Q+R Q
Sbjct: 5   AGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQ 64

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
            K S++ Y F+P+K  +LDYM+QK+VEMG G ++PVIT++TQ      +R+R   I AAE
Sbjct: 65  PKPSELIYCFAPLKQGQLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAE 124

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC +L+LP        +  L  WD + +++F DE   S++ L  L  +   P+  +LIGP
Sbjct: 125 QCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGP 183

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAAMALVQAICGDW 244
           EGG+  EE++ LH LPFVT + LGPRILR                    LVQA+ GDW
Sbjct: 184 EGGFSEEERQLLHRLPFVTAIPLGPRILRADTAAVAAMA----------LVQAVLGDW 231


>gi|242373882|ref|ZP_04819456.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           M23864:W1]
 gi|242348436|gb|EES40038.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           M23864:W1]
          Length = 253

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           +L+R F++       +      +  H++ HV+R KEG++I++       +  +I  +  +
Sbjct: 3   NLQRYFINQNADENQRFFIEDREDVHHITHVMRYKEGNHIIITFSDKKVYKCEIISINDN 62

Query: 65  -IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
            I  ++ E Q  +      +      IK ++ ++MIQK+ EMG          R VI   
Sbjct: 63  NIELRLDEKQDINTELPQHITICSGLIKADKYEWMIQKATEMGASEFIAVGMDRSVIKLN 122

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  +DR +     AAEQ   LT+P IY  + L+ +    +H   ++ A E      
Sbjct: 123 ESKVAKKIDRWQKIIKEAAEQSYRLTIPNIYFKSNLKAIYDMINHYDYVLIAYEEQAKHG 182

Query: 177 SLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L      L        V ++ GPEGG   +E          T + LGPRILR++TA + 
Sbjct: 183 DLSHFKHILKQFESQDRVLMIFGPEGGLSDKEVSLFQEHS--TLVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ V   
Sbjct: 241 ALSAVSFE 248


>gi|52210978|emb|CAH36966.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 246

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 18/235 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K   
Sbjct: 1   MPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKRGA 59

Query: 67  FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 ++         V         +++D++I+K+VE+G+ A+ P+ T         +
Sbjct: 60  LARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                +   R    ++ EQC    LP I P    +  L        D   +++ +     
Sbjct: 120 RADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRASV 179

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                  L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 180 ---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 230


>gi|187716561|gb|ACD17785.1| protein of unknown function DUF558 [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 18/251 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV  PL  +       D   ++  VLR++ GD+I+LFNG+ GE+ +++  V + S 
Sbjct: 1   MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+ E++         +         +++D++I+K+VE+G  +  P+ T  +       
Sbjct: 60  MVKIREFRDIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGD 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCG 173
                    +    ++ EQC    LP + P   +   L +      + + +I+ +     
Sbjct: 120 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSPRAS- 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              S   L +      V +L+GPEGG+ + E+    +  F T + LGPR++R++TA +A 
Sbjct: 179 --ISFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGF-TAVGLGPRVMRTETAGIAV 235

Query: 234 MALVQAICGDW 244
           ++ + A  G W
Sbjct: 236 LSALAAGWGGW 246


>gi|92118652|ref|YP_578381.1| 16S ribosomal RNA methyltransferase RsmE [Nitrobacter hamburgensis
           X14]
 gi|91801546|gb|ABE63921.1| protein of unknown function DUF558 [Nitrobacter hamburgensis X14]
          Length = 261

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 94/251 (37%), Positives = 135/251 (53%), Gaps = 21/251 (8%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
               RL+VD PL    +     +Q +YL +VLR+  G N+L+FNG+DGEW + IS   + 
Sbjct: 6   FRSPRLYVDAPLEPGGKVPLDRNQGNYLGNVLRLGSGANVLVFNGRDGEWRAAISGRKRP 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
               +   +R+Q +  D+ Y+F+P+K  RLDYM+QK+VEMG+ A++PV+TR+TQ    N 
Sbjct: 66  ECLDIVAAARAQDRLPDLHYVFAPLKHARLDYMVQKAVEMGVSALQPVLTRFTQVARVNG 125

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R+R   I AAEQC IL+L  +  P TL+  L        +V  DE     N    L  +
Sbjct: 126 ERMRANVIEAAEQCGILSLAAVEEPVTLDRWLGRRAPERLLVLCDEAALVTNPAAALEPM 185

Query: 185 AHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR----------SDTAAVAA 233
                 + +L+GPEGG+  +E+  L + P    LSLGPRILR                  
Sbjct: 186 RGAAHGIDVLVGPEGGFAEDERANLLNQPNTLRLSLGPRILRADTAAVAAIA-------- 237

Query: 234 MALVQAICGDW 244
             LVQ + GDW
Sbjct: 238 --LVQTVLGDW 246


>gi|91776603|ref|YP_546359.1| hypothetical protein Mfla_2251 [Methylobacillus flagellatus KT]
 gi|91710590|gb|ABE50518.1| 16S rRNA m(3)U-1498 methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 245

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 13/245 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R +    L    +   +G+   + +  LRM+ GD+ +LFNG    +LS+++ + K    
Sbjct: 4   PRFYHPGALIPGNETALAGNAASHASKALRMQVGDHAILFNGDGHNYLSRLTSIRKQEVI 63

Query: 68  --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +E Q         +    +    +R+D+ IQK+VEMG+ +I+P+ ++ +      + 
Sbjct: 64  AEVLEAQPCPTESPLKITLAQAISSGDRMDFTIQKAVEMGVSSIQPIFSQRSIVKLTGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +  +   ISA EQ     +P + P   L   L           A  T      L 
Sbjct: 124 AEKRREHWQNVAISACEQSGRAYIPPVAPAINLSEWLAQKPGAD----AYITLAPGAPLT 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                +   ++ +LIGPEGG    E        F T + +GPRILR++TAA+AA+A +Q 
Sbjct: 180 LPQLTSPTRHICLLIGPEGGLADHEIALAAQHGF-TLVRMGPRILRTETAAIAAIASMQT 238

Query: 240 ICGDW 244
           + GD+
Sbjct: 239 LWGDF 243


>gi|229828427|ref|ZP_04454496.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM
           14600]
 gi|229793021|gb|EEP29135.1| hypothetical protein GCWU000342_00488 [Shuttleworthia satelles DSM
           14600]
          Length = 246

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 8/243 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           ++++FVD            G+   +L  V+R++ G+ + +      ++   +  V +   
Sbjct: 1   MQQVFVDARQVNDEIVTIQGEDARHLGRVVRIRPGEEVRVSVRGGRDYYGHVLMVDREEM 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             K+  ++ S      +    +  K +R++ +I+K+VE+G+  I PV TRY       + 
Sbjct: 61  TVKLVEEAASTELAQKICLFQAIPKGDRMETVIEKAVELGVYEIVPVETRYCVVRLDEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178
                +R +    +AA Q     +P I P T  +  L +  D +  ++  +   G + + 
Sbjct: 121 KARKRERWQAIAANAARQSKRSIIPRIAPVTPYQKALDDAGDADLVLLPYENARGMQATG 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L A+AH   + I IGPEGG+ ++E +       +  +SLG RILR+DTAA+AAM +V 
Sbjct: 181 EALTAVAHAGGIGIFIGPEGGFAADEIKAAQGKDNIRVISLGRRILRTDTAAIAAMTMVM 240

Query: 239 AIC 241
             C
Sbjct: 241 MAC 243


>gi|304393152|ref|ZP_07375080.1| surface protein [Ahrensia sp. R2A130]
 gi|303294159|gb|EFL88531.1| surface protein [Ahrensia sp. R2A130]
          Length = 255

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/229 (37%), Positives = 138/229 (60%), Gaps = 5/229 (2%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +I    +R F    L      +    + +++ +VLRM +GD +LLFNG+DGEW + +   
Sbjct: 13  RIDFTTRRFFTPEALGAGGHIEPGRAEANHVLNVLRMGDGDPLLLFNGRDGEWRATVQRE 72

Query: 62  G-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           G K   F +  Q+R Q +   ++ +F+P+K  RL+YMIQK+VEMG G ++PV+T YTQ  
Sbjct: 73  GRKKATFVLGEQTRVQPELPTLRLLFAPLKQARLEYMIQKAVEMGAGHLQPVMTAYTQMR 132

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENSLE 179
             N++R+ T+ + AA+QC +L LP +Y   +++  + +      ++F DE   G+  +L+
Sbjct: 133 KVNIERMETHVVEAAQQCGVLALPQVYDVLSMQDAVADC---GTVIFCDEMEAGTGGALD 189

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            L  +     +A+LIGPEGG+  EE+E LH+   V  + LGPRILR+DT
Sbjct: 190 ILRDLTITAPLAVLIGPEGGFSPEEREWLHAQSHVHAIPLGPRILRADT 238


>gi|290968566|ref|ZP_06560104.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781219|gb|EFD93809.1| RNA methyltransferase, RsmE family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 241

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++++F DFPL  + + + +G    ++  VLR   GD I + +     +  +I  + G S 
Sbjct: 1   MRKIFTDFPL--EARFELNGADARHVLVVLRHGVGDRIAVTDSTGTTYACRIDSIAGHSA 58

Query: 66  RFKVEYQSRSQT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
              VE +   +T +   V      +K ++ +++IQK+ E+G+  I PV   +        
Sbjct: 59  VLTVEERLSCRTQETGKVVLAAGLLKNDKFEWLIQKATELGVHTIIPVQMEHCVVKLNDN 118

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R R   + AA+QC    +P I        L + +  +  ++  +       SL
Sbjct: 119 HRSGKFERWRRIAVEAAKQCGRDDVPIIREVMPFTELFQAYGTSRFVIPYERET---TSL 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLH-SLPFVTPLSLGPRILRSDTAAVAAMALV 237
            ++       +V + IGPEGG+  +E         +   +SLG RILR++TAA+A+++++
Sbjct: 176 AEVCHEVQQGDVVLCIGPEGGFSPKEIAYAVSQAAWCRTVSLGKRILRAETAALASLSIL 235

Query: 238 QAICG 242
               G
Sbjct: 236 MYERG 240


>gi|253998192|ref|YP_003050255.1| hypothetical protein Msip34_0480 [Methylovorus sp. SIP3-4]
 gi|253984871|gb|ACT49728.1| protein of unknown function DUF558 [Methylovorus sp. SIP3-4]
          Length = 243

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 13/245 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F D PL   +         ++   VLR++ GD + LFNG   ++ ++I  + K+   
Sbjct: 4   PRFFSDVPLTSNSSITLPATAANHAIKVLRLQVGDTLRLFNGDGHDYSAEIETIRKNEVI 63

Query: 68  KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
               Q  + S   +  +         +R+D+ IQKSVE+G+ AI+P+  + +        
Sbjct: 64  VKTGQAVAVSNESRLKITLAQGISAGDRMDFTIQKSVELGIHAIQPISCQRSVVKLSGDR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +  +   ISA EQ     LP +   T+L   L +       +  D    +   L+
Sbjct: 124 ADKRREHWQNVAISACEQSGRAFLPEVGQATSLAKWLSSAPPFATRITLDPLASTR--LQ 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  I   P + +LIGPEGG  SEE     S  F T + LGPRILR++TAA+AA+A +  
Sbjct: 182 DLP-IPQGP-ICLLIGPEGGLTSEEIAMAASQGF-TGVQLGPRILRTETAALAALAAINT 238

Query: 240 ICGDW 244
             GD+
Sbjct: 239 AWGDF 243


>gi|119899122|ref|YP_934335.1| 16S ribosomal RNA methyltransferase RsmE [Azoarcus sp. BH72]
 gi|119671535|emb|CAL95448.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 243

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 111/245 (45%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R      L    +        H+   VLRM++G+ I+LF+G   E  + +   GKS  
Sbjct: 2   ISRFHFPGVLPRHGETALPDAVAHHATRVLRMRDGEPIVLFDGSGAEAEATLVLRGKSAA 61

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             +  Y+   +    D+  + +    +++D+++QK+VE+G  A++P+    +      + 
Sbjct: 62  ALISAYREVDRESPLDLVLVQALATGDKMDWIVQKAVELGARAVQPIQAERSVLRLAGER 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +  +   + A EQ     +P +    +L+  L     +   V       +   L 
Sbjct: 122 ATRRREHWQQVAVGACEQSGRNRIPEVGEILSLQAYLAAAREDRATVRCVLDPAAAQGLS 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L   A    + +L+GPEGG+  +E     +    TP+ LGPR+LR++TA +A +A +QA
Sbjct: 182 ALPRPAGA--LHLLVGPEGGWSDDEL-AACAAAHCTPVGLGPRVLRTETAGLAMLAALQA 238

Query: 240 ICGDW 244
             GD+
Sbjct: 239 RWGDF 243


>gi|53725660|ref|YP_104018.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei ATCC
           23344]
 gi|124384319|ref|YP_001027236.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC
           10229]
 gi|126452434|ref|YP_001067709.1| hypothetical protein BURPS1106A_3472 [Burkholderia pseudomallei
           1106a]
 gi|166998553|ref|ZP_02264411.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20]
 gi|229008328|ref|YP_991742.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei
           SAVP1]
 gi|229027672|ref|YP_001082829.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia mallei NCTC
           10247]
 gi|242315666|ref|ZP_04814682.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b]
 gi|254178856|ref|ZP_04885510.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
           10399]
 gi|254202737|ref|ZP_04909100.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH]
 gi|254208079|ref|ZP_04914429.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU]
 gi|254299290|ref|ZP_04966740.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           406e]
 gi|52429083|gb|AAU49676.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
           23344]
 gi|124292339|gb|ABN01608.1| RNA methyltransferase, RsmE family [Burkholderia mallei NCTC 10229]
 gi|126226076|gb|ABN89616.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
           1106a]
 gi|147746984|gb|EDK54061.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei FMH]
 gi|147751973|gb|EDK59040.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei JHU]
 gi|157808975|gb|EDO86145.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           406e]
 gi|160694770|gb|EDP84778.1| conserved hypothetical protein TIGR00046 [Burkholderia mallei ATCC
           10399]
 gi|242138905|gb|EES25307.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1106b]
 gi|243065237|gb|EES47423.1| RNA methyltransferase, RsmE family [Burkholderia mallei PRL-20]
          Length = 255

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239


>gi|304380834|ref|ZP_07363494.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|304340561|gb|EFM06495.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
          Length = 253

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   
Sbjct: 3   NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +     
Sbjct: 63  KIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    + 
Sbjct: 123 EAKAAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + 
Sbjct: 183 ELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ +   
Sbjct: 241 ALSAISYE 248


>gi|77965940|gb|ABB07320.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia sp. 383]
          Length = 262

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 15  AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARLVEIDKR 73

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  SALAQIDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 S---IPFTSLPDAPPAATVTLLIGPEGGLSPDEENAARARGF-TALSLGPRVLRTET 246


>gi|254454094|ref|ZP_05067531.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 238]
 gi|198268500|gb|EDY92770.1| conserved hypothetical protein TIGR00046 [Octadecabacter
           antarcticus 238]
          Length = 209

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 6/211 (2%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           +R+  G ++ LFNG+DGEW ++++   K         Q++      D+  +F+PIK +R 
Sbjct: 2   MRLDVGADVSLFNGRDGEWHAQVAAASKKNGVLDCIVQTKPLQLPPDLWLVFAPIKKDRT 61

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
            ++++K+ E+G   I PV T YTQ+      DR++ + + AAEQC    +P +       
Sbjct: 62  SFIVEKAAELGAARIVPVQTEYTQSANRVRQDRLQAHALEAAEQCGGTYVPEVAEIQKFA 121

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
            +   WD   +I+F DET   + ++            AILIGPEGG+  +E+E L+ +  
Sbjct: 122 KMFNRWDPTRRILFCDETMVGQGAV----IPTGEGPWAILIGPEGGFSDKERERLNGMAC 177

Query: 214 VTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              +SLGPRILR+DTAAVAAM L Q   GDW
Sbjct: 178 AHAISLGPRILRADTAAVAAMTLWQQALGDW 208


>gi|282875997|ref|ZP_06284864.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           SK135]
 gi|281295022|gb|EFA87549.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           SK135]
          Length = 250

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F++              + YH++ +V+R KEG NI++    +  +  KI  +  +S
Sbjct: 1   MQRYFMNQSADENQCFFIENKEDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQS 60

Query: 65  IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           I  K VE Q  +     ++      IK ++ ++MIQK+ EMG      V    +      
Sbjct: 61  IEIKLVEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLND 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + R +     AAEQ   LT+P I   + L+ +         ++ A E       
Sbjct: 121 SKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + +        V I+ GPEGG    E      +   T + LGPRILR++TA + A
Sbjct: 181 LSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ V   
Sbjct: 239 LSAVSYE 245


>gi|284048078|ref|YP_003398417.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM
           20731]
 gi|283952299|gb|ADB47102.1| protein of unknown function DUF558 [Acidaminococcus fermentans DSM
           20731]
          Length = 244

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV             G   H++ HVLRMK G+ + + +      + KI+  G++  
Sbjct: 1   MYRFFVPRDF--GETMSIDGQDAHHITHVLRMKLGEQLQIVSLDQVAAVMKITGFGENRV 58

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
               VE   +S      V  I    K ++L+++IQK++E+G+  IRP I  ++       
Sbjct: 59  DLALVETLEKSHEPSVKVTLIQGLPKQDKLEWVIQKAIELGVTEIRPAIMDHSVVKVDPA 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R +    +AA+Q     +P +  P     ++       +IV A E   +    
Sbjct: 119 KAAKKQERWQKIAEAAAKQSKRDIIPQVALPAKFRDIVTQCPAELKIV-AYEVEDTRGIR 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L A      +A LIGPEGG   +E      L +   +SLGPRI+R++TAA+A +  + 
Sbjct: 178 EVLAAHKDARTIAFLIGPEGGISKDEFALTQELGW-HSVSLGPRIMRTETAALATLTAIM 236

Query: 239 AICG 242
              G
Sbjct: 237 YETG 240


>gi|167747076|ref|ZP_02419203.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662]
 gi|317471891|ref|ZP_07931226.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|167654036|gb|EDR98165.1| hypothetical protein ANACAC_01788 [Anaerostipes caccae DSM 14662]
 gi|316900664|gb|EFV22643.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 245

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F++            GD  +++ +VLRMK G+ +LL +    E+ S++  + G  I
Sbjct: 1   MYRFFIEECQVDGAYIWVEGDDVNHIRNVLRMKAGERVLLCSESGMEYESELVSLEGDKI 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + ++ +        ++ +       K +++D +IQK++E+G   I PV  +        +
Sbjct: 61  QARILDIHGAESELKTRIVLFQGLPKGDKMDLVIQKAIELGASEIVPVKMKRCVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 +R     +SAA+Q     +P +    +     +     +  +V  +   G E S
Sbjct: 121 KARKKTERWNAVALSAAKQSKRGMIPRVSRVYSFHEAAEMARGLSMVLVPYEAAEGMEYS 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +  +    +V I IGPEGG+   E E L        LSLG RILR++TA +A ++++
Sbjct: 181 RQLVKEVKGRESVGIFIGPEGGFEPAEIEELRESGG-QILSLGKRILRTETAGMAMLSVL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFEL 243


>gi|315924412|ref|ZP_07920634.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622291|gb|EFV02250.1| RsmE family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 245

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV        Q    G+++ + A  +R+++ +   + +G   ++   I+   K   
Sbjct: 1   MHRFFVKPEQIHGDQIIIDGEEFKHAAKAVRIRDNELFEVCDGSGFDYHCLITCREKEQL 60

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
             V  + R         V       K  ++D ++QK+ E+G+ ++ P ++ +        
Sbjct: 61  TAVIQEKRPSAGELPYTVTLFQGLPKGQKMDEIVQKNTELGISSVVPFVSAFCVAKLEEP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   R +     AA+Q     +P ++ P   + + +       ++ A E       
Sbjct: 121 DKVARKCGRWQRIAFEAAKQSKRGKIPQVHEPVAFQRMCEIAADFDLVIIAYEHEMDRPL 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L       N+A+++G EGG+  EE E L +      +SLG RILR++TA +  +A +
Sbjct: 181 QTVLEGRTQYRNIAVIVGSEGGFSREEVERLEAAG-AKSVSLGRRILRTETAGMVLLAQI 239

Query: 238 QAICG 242
               G
Sbjct: 240 NYAFG 244


>gi|167920517|ref|ZP_02507608.1| hypothetical protein BpseBC_18364 [Burkholderia pseudomallei
           BCC215]
          Length = 249

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 18/238 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 195

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++TA
Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTETA 249


>gi|253733172|ref|ZP_04867337.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207704|ref|ZP_06924139.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911785|ref|ZP_07129228.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|253728712|gb|EES97441.1| 16S rRNA m3U1498 methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887721|gb|EFH26619.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886031|gb|EFK81233.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 253

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   
Sbjct: 3   NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +     
Sbjct: 63  KIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    + 
Sbjct: 123 EAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + 
Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ +   
Sbjct: 241 ALSAISYE 248


>gi|282600332|ref|ZP_05973903.2| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541]
 gi|282565567|gb|EFB71102.1| 16S rRNA methyltransferase RsmE [Providencia rustigianii DSM 4541]
          Length = 210

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95
           M  G  I LF+G +  + ++I+   K   F     S    ++S +      +  +  +++
Sbjct: 1   MSVGQKIELFDGSNHTFSAEITEATKKSVFVHIESSTLDDRESPLDIHLGQVMSRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKSVE+G+  I P+++         +     + + +   I+A EQC    +P I P 
Sbjct: 61  FTIQKSVELGVNTITPLLSERCGVRLDGERLEKKLQQWQKIAIAACEQCGRNRIPEIRPV 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
            +LE      D   +I        S N+L      A + +V +LIGPEGG  +EE     
Sbjct: 121 QSLEAWCAENDGAFKINLHPRASHSVNTLP-----ADLKHVRLLIGPEGGLSTEEIAMTA 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +  F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 NYQF-TDILLGPRVLRTETTALTAITALQVRLGD 208


>gi|161509805|ref|YP_001575464.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848608|ref|ZP_06789354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A9754]
 gi|160368614|gb|ABX29585.1| hypothetical protein USA300HOU_1578 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|294824634|gb|EFG41057.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A9754]
 gi|320140538|gb|EFW32392.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144075|gb|EFW35844.1| RNA methyltransferase, RsmE family [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 253

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   
Sbjct: 3   NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +     
Sbjct: 63  KIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    + 
Sbjct: 123 EAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + 
Sbjct: 183 ELSNFKQTLQQFNAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ +   
Sbjct: 241 ALSAISYE 248


>gi|154686804|ref|YP_001421965.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
           amyloliquefaciens FZB42]
 gi|154352655|gb|ABS74734.1| YqeU [Bacillus amyloliquefaciens FZB42]
          Length = 256

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     +      + +G+  H++A+V+RM  GD I+  +    E L  +  V K
Sbjct: 1   MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSK 60

Query: 64  SI--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                   E+   ++     ++      K ++L+++IQK  E+G     P     +    
Sbjct: 61  DHISCSIAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    T   LL+  ++  + V A E    +
Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ 180

Query: 176 NS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                   +L ++    ++ I+ GPEGG    E   L     V    LGPRILR++TA +
Sbjct: 181 GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVL-CGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ V  
Sbjct: 240 YALSAVSY 247


>gi|196231634|ref|ZP_03130492.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428]
 gi|196224487|gb|EDY18999.1| protein of unknown function DUF558 [Chthoniobacter flavus Ellin428]
          Length = 249

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R ++        +      + H+   VLRMK GD   LFNG+  E   +I+ V K  I
Sbjct: 1   MPRFYIAPHAWNPDKLALDHGETHHALDVLRMKAGDRATLFNGQGAEATVEIASVDKGKI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------ 119
             K    S+S+     +    +  K   +D +++K+ E+G   I P+++  T        
Sbjct: 61  ALKKISVSKSEPIGCQIVLGQAIPKGKNMDLIVEKATELGAAGIVPLLSERTVVRCDEGE 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                ++ +   I AA+QC    LP ++ P + +   ++ +    ++ A     S +  E
Sbjct: 121 ALAKREKWQRVAIEAAKQCGQNWLPTVFKPQSPKDFFQSGEKFDLMLIASLQPDSRHVKE 180

Query: 180 KLHAI-----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            L             V +L+GPEG +   E     +     P++LGP ILRS+TAA+  +
Sbjct: 181 VLAEAGASGKKKPARVLVLVGPEGDFTPAEVNLAKNAG-CRPVTLGPIILRSETAAIYCL 239

Query: 235 ALVQAIC 241
           +++    
Sbjct: 240 SVLSHEL 246


>gi|329896498|ref|ZP_08271556.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC3088]
 gi|328921715|gb|EGG29088.1| Ribosomal RNA small subunit methyltransferase E [gamma
           proteobacterium IMCC3088]
          Length = 216

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI-- 89
           +  VLR+K G  + LFNG    +  ++    K I       +++   +S ++     +  
Sbjct: 1   MLKVLRLKTGAPLELFNGDGNNYQCELLDSAKRIATIRVLSAKANPTESSLRSRLGIVVS 60

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTL 143
           K +R+D+++QK+ E+G+  I P+ +         +             +SA EQ     +
Sbjct: 61  KGDRMDFVVQKATELGIHEIYPLTSERCDVKLNAERAEKRQQHWSKVAVSACEQSGRSVI 120

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P I P  ++   +   + + + V        ++  E         +VAIL+GPEGG    
Sbjct: 121 PRIAPIQSIHQWISEVNADLKWVLHHRASAEKSPTEA-------QSVAILVGPEGGLSET 173

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           E E      F+  + LGPR+LR++TA + A++++Q   GD+
Sbjct: 174 EVELALQHKFIPTV-LGPRVLRTETAPLVALSVLQQRYGDF 213


>gi|313637806|gb|EFS03151.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri
           FSL S4-171]
          Length = 255

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F+D  +  + +  + +G+ +H++  V+RMKEGD + +   ++   ++KI  +    
Sbjct: 1   MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +  ++  +  +Q   +    K ++L+Y+IQKS E+G     P     +      
Sbjct: 61  VILNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR++     AAEQ     +P ++   +L+ LL   +    IV A E    E  
Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V ++ GPEGG   +E   L  L  V    LGPRILR++TA +  
Sbjct: 181 DRTLASLFKEAVPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|228473117|ref|ZP_04057874.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275699|gb|EEK14476.1| RNA methyltransferase, RsmE family [Capnocytophaga gingivalis ATCC
           33624]
          Length = 243

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 6/240 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++  + D       +     ++ +++  VLR K GD + + +G+   + ++I Y+  K  
Sbjct: 1   MQLFYNDSLYPQVQEVTFDKEESNHIHKVLRKKTGDLLFITDGRGYLYEAQIQYITDKKC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
              +   S + T    +    +P K   R ++ ++K+ E+G+  + P++  +++      
Sbjct: 61  TAHILSHSLAPTPAYHLHIAVAPTKMNERYEWFLEKATEIGVHEVTPILCDHSERKTIKT 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLEKLH 182
           +R     +SA +Q      P + PP +L   L   + N   + V   +       L++L 
Sbjct: 121 ERFEKILLSAMKQSLQCYKPQLNPPISLLEWLDTIESNSVGKYVAHCQEGARVLLLDRLE 180

Query: 183 AIAH-IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            +     N+ +LIGPEG +   E +   S  F+ P+SL P  LR++TAA+ A + +  I 
Sbjct: 181 ELPQETTNLWVLIGPEGDFSQREIQKACSKGFL-PISLSPNRLRTETAAIVACSCISDIF 239


>gi|171992137|gb|ACB63056.1| protein of unknown function DUF558 [Burkholderia ambifaria MC40-6]
          Length = 262

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          +   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 15  AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 73

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                              V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 SV---PFASLPDAPPAAEVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246


>gi|291541829|emb|CBL14939.1| RNA methyltransferase, RsmE family [Ruminococcus bromii L2-63]
          Length = 242

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F +  +         G+   +++ VLRM+ GD+I L +    ++  KIS + +  +   
Sbjct: 4   FFTEKNIF-GNNYTLVGENAKHISKVLRMRTGDDITLVSPNKTQYECKISLITQGEVTVD 62

Query: 69  VEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +  Q   + +    V    +  K +++D+++QK  E+G+  I P+I+         ++  
Sbjct: 63  IISQKPCENEPDVFVTLYQALPKGDKMDFIVQKCTELGISRIVPMISARCVSRPDEKSLK 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
              +R +   + AA Q     +P + P  + +   +    N + VF  E  G   S+ K+
Sbjct: 123 KKCERWQKIALQAAMQSRRGIIPEVTPCISFKEATEQTKQNEKTVFFYEMGGE--SVRKI 180

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                   V + IG EGG+   E +++ ++      +LG RILR++TA +AA++++    
Sbjct: 181 LNGTKPKTVGMFIGSEGGFEQSEVDSVTAIGG-QAATLGKRILRAETAPLAALSIIMYET 239

Query: 242 GDW 244
            ++
Sbjct: 240 DNF 242


>gi|170701111|ref|ZP_02892086.1| protein of unknown function DUF558 [Burkholderia ambifaria
           IOP40-10]
 gi|170133972|gb|EDT02325.1| protein of unknown function DUF558 [Burkholderia ambifaria
           IOP40-10]
          Length = 262

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 15  AAVPRFFVEAALRADATLTLPADVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 73

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                              V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAMPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 S---IPFASLPDAPPAAAVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246


>gi|295406700|ref|ZP_06816505.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8819]
 gi|297245718|ref|ZP_06929583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8796]
 gi|294968447|gb|EFG44471.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8819]
 gi|297177369|gb|EFH36621.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           aureus A8796]
          Length = 253

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   
Sbjct: 3   NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +     
Sbjct: 63  KIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    + 
Sbjct: 123 EAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + 
Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ +   
Sbjct: 241 ALSAISYE 248


>gi|313633215|gb|EFS00088.1| ribosomal RNA small subunit methyltransferase E [Listeria seeligeri
           FSL N1-067]
          Length = 255

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++R F+D  +  + +  + +G+ +H++  V+RMKEGD + +   ++   ++KI  +  + 
Sbjct: 1   MQRYFIDKTIENEQEPIRITGENFHHMTRVMRMKEGDQVFIVFPRNQTAIAKIISIAAEE 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   V+      T+    +       K ++L+Y+IQKS E+G     P     +      
Sbjct: 61  VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPFKAERSVVKWEE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR++     AAEQ     +P ++   +L+ LL   +    IV A E    E  
Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNNQFDYIVVAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V ++ GPEGG   +E   L  L  V    LGPRILR++TA +  
Sbjct: 181 DRTLASLFKEAVPNQSVLVVFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|313608746|gb|EFR84566.1| ribosomal RNA small subunit methyltransferase E [Listeria
           monocytogenes FSL F2-208]
          Length = 255

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTNELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
                V++         ++       K ++L+ +IQKS E+G          R V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFITYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   +E   L  +       LGPRILR++TA +  
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEKELLHLQEVN-AKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|229260091|ref|YP_367964.2| hypothetical protein Bcep18194_A3719 [Burkholderia sp. 383]
          Length = 255

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AQVLRLQPGDVLALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  SALAQIDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDTLPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 S---IPFTSLPDAPPAATVTLLIGPEGGLSPDEENAARARGF-TALSLGPRVLRTET 239


>gi|299065688|emb|CBJ36861.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
           [Ralstonia solanacearum CMR15]
          Length = 249

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R  +D PL   T          ++ HVLR+  GD I LF+G   E+ +++  + +   
Sbjct: 3   LPRFHIDSPLAPHTTVTLPESVTRHI-HVLRLAVGDEICLFDGSGQEFRARLDAINRRDA 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   ++  T+    +         +++D++I+K+VE+G+ AI P+ T         +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   +    +A EQC    +P + P   L   L     + +        GS+   
Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPTVSPVAPLRDWLAAAKASERARVMLSPRGSQPLT 181

Query: 179 E-KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +  + +   I +  + +LIGPEGG   +E+    +  ++ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAVQSRGRIGSAGIELLIGPEGGLSPDEEALAEAAGYL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|242242852|ref|ZP_04797297.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           W23144]
 gi|242233694|gb|EES36006.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           W23144]
          Length = 253

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +L+R F++              + YH++ +V+R KEG NI++    +  +  KI  +  +
Sbjct: 3   NLQRYFMNQSADENQCFFIDNKEDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQ 62

Query: 64  SIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           SI  K+E + +  T+   ++      IK ++ ++MIQK+ EMG      V    +     
Sbjct: 63  SIEIKLEEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLN 122

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  + R +     AAEQ   LT+P I   + L+ +         ++ A E      
Sbjct: 123 VSKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + +        V I+ GPEGG    E      +   T + LGPRILR++TA + 
Sbjct: 183 ELSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEIALFGDVS--TLVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ V   
Sbjct: 241 ALSAVSYE 248


>gi|86141368|ref|ZP_01059914.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831927|gb|EAQ50382.1| hypothetical protein MED217_05102 [Leeuwenhoekiella blandensis
           MED217]
          Length = 237

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 10/232 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++  +         +     D+  ++  VLR + GD + + NG    + ++I     S  
Sbjct: 1   MQLFYHPEIAAEAKEATFPKDESKHIVKVLRKRTGDVLDITNGSGNFFKAEIISASPSNC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+   +  Q     +    +P K  +R +  ++K+ E+G+  I P+I  +++      
Sbjct: 61  TVKILEVTSEQPLPYHLHLAVAPTKLNDRFELFLEKATEIGISEISPIICDHSERKVIKE 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSLEKL 181
           +R      SA +Q     +P +    +    L   K ++ +  I   +ET    N     
Sbjct: 121 ERYERIIQSAMKQSLKAHIPKLNEAQSFSDFLETTKTFNGDRFIAHCEET----NRFSLK 176

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             +    +V ILIGPEG +   E E      F +P+ LG   LR++TAA+ A
Sbjct: 177 QKLQPKRDVLILIGPEGDFSPSEIEQAIQAGF-SPVMLGESRLRTETAAIVA 227


>gi|260775560|ref|ZP_05884457.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608741|gb|EEX34906.1| ribosomal RNA small subunit methyltransferase E [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 210

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           MK G  +LLF+G   E+ + I  V K        E   RS     D+       +  +++
Sbjct: 1   MKVGQEVLLFDGYGAEFPAVIEEVSKKSVTVNITERVERSSESPLDLHLGQVISRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKSVE+G+  I P+I+         +     + + +   ISA EQ     +P I P 
Sbjct: 61  FTIQKSVELGVNTITPLISERCGVKLDQKRFEKKLAQWQKVAISACEQSGRNIVPQIRPI 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             L+          ++        S N+L      A +  V +LIGPEGG  +EE E   
Sbjct: 121 MQLDEWCAEDYDGLKLNLHPRAKYSINTLP-----APVEKVRLLIGPEGGLSAEEIEKTR 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F   L LGPR+LR++TAA+ A+  +Q   GD
Sbjct: 176 EYQFEETL-LGPRVLRTETAALTAITALQVRFGD 208


>gi|126730424|ref|ZP_01746235.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37]
 gi|126709157|gb|EBA08212.1| hypothetical protein SSE37_11729 [Sagittula stellata E-37]
          Length = 247

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 81/218 (37%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL VD PL  +     S DQ HYL  V+R++ G  + LFNG+DGEW ++++  GK     
Sbjct: 13  RLCVDQPLAEEQAVALSRDQAHYLFGVMRLERGARVALFNGRDGEWAAEVADAGKRGGTL 72

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               +  +Q    D+  +F+P+K  R D++++K+VEMG+  I PV T +T +    +D+ 
Sbjct: 73  VCRDRQAAQGTPPDLWLLFAPVKKARTDFIVEKAVEMGVRRILPVQTDFTNSERLRVDKQ 132

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + + AAEQC    +P +     LE LL  WD   QI+F DET     ++  L  +   
Sbjct: 133 QAHAVEAAEQCGATFVPEVAEMARLERLLSEWDTTRQILFCDETAAGAPTI--LGGLEPG 190

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           P  A+LIGPEGG+   E+  L  +     +SLGPRILR
Sbjct: 191 P-WAVLIGPEGGFSDRERARLAEMDCARAVSLGPRILR 227


>gi|209521966|ref|ZP_03270631.1| protein of unknown function DUF558 [Burkholderia sp. H160]
 gi|209497600|gb|EDZ97790.1| protein of unknown function DUF558 [Burkholderia sp. H160]
          Length = 232

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 18/236 (7%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV-EYQSRSQTKQ 79
                D   +   VLR++ GD+++LFNG+ GE+ +++  V + S R K+ ++++      
Sbjct: 2   IALPDDVVRH-VTVLRLQPGDSLVLFNGQGGEYGAELVEVERRSARVKIRDFRAVEVEPP 60

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133
             +         +++D++I+K+VE+G     P+ T  +      +         +    +
Sbjct: 61  YRLTLAQGIAGGDKMDWLIEKAVELGASGFVPLATVRSVVRLTGERAQRRQQHWQGVVRA 120

Query: 134 AAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           + EQC    LP + P       L     +      +++ +        S   L       
Sbjct: 121 SCEQCGRNRLPEVMPVQDFGAWLDTLSREPAPDELRLLLSPRAS---ISFAALPDAPPRG 177

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            V +LIGPEGG  ++E+    +  F T L LGPR+LR++TA +A +A + A  G W
Sbjct: 178 RVTLLIGPEGGLSADEEAAAVAQGF-TALGLGPRVLRTETAGIAVLAALSARWGGW 232


>gi|255659202|ref|ZP_05404611.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM
           20544]
 gi|260848654|gb|EEX68661.1| RNA methyltransferase, RsmE family [Mitsuokella multacida DSM
           20544]
          Length = 248

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 16/249 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++RLF    L      +  G   H+L HV+R K G  +++ + ++     +++       
Sbjct: 1   MRRLFYKGILA--DTIEIRGADAHHLMHVMRAKPGQEVIVVDDENQVARMEMTRFTSDAV 58

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE           +      +K +++D+++QK+VE+G+  I PV +         +
Sbjct: 59  TMELVERLDADTESPIQLGLAMCLLKADKMDFVVQKAVELGVNCIVPVASHNCVVRYDAK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCGS 174
                  R +     AA+QC    L  ++P  TL+  L +     D + + +F  E   +
Sbjct: 119 KAKQRQQRWQKIADEAAKQCGRTVLVKVFPIETLKDFLSHAWYEDDMDSEFLFCYENEEN 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +  + L          +LIGPEGG+  EE E +        ++LGPRILR++TAAVA +
Sbjct: 179 VSVRDCLQRTTS-ERYMLLIGPEGGFTLEEAEAVVKAGG-QSVTLGPRILRAETAAVAGL 236

Query: 235 ALVQAICGD 243
           ++VQ   GD
Sbjct: 237 SIVQYEKGD 245


>gi|297590879|ref|ZP_06949517.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297575765|gb|EFH94481.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437954|gb|ADQ77025.1| RsmE family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 253

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   
Sbjct: 3   NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +     
Sbjct: 63  KIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    + 
Sbjct: 123 EAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAHEEEAKDG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + 
Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ +   
Sbjct: 241 ALSAISYE 248


>gi|76812178|ref|YP_334841.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
           1710b]
 gi|226196890|ref|ZP_03792469.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pakistan 9]
 gi|229269497|ref|YP_109550.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
           K96243]
 gi|254190942|ref|ZP_04897448.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259381|ref|ZP_04950435.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a]
 gi|76581631|gb|ABA51106.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           1710b]
 gi|157938616|gb|EDO94286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225931150|gb|EEH27158.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           Pakistan 9]
 gi|254218070|gb|EET07454.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 1710a]
          Length = 255

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239


>gi|302385307|ref|YP_003821129.1| protein of unknown function DUF558 [Clostridium saccharolyticum
           WM1]
 gi|302195935|gb|ADL03506.1| protein of unknown function DUF558 [Clostridium saccharolyticum
           WM1]
          Length = 245

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +   FV      ++  +  G   +++ +VLRM  G+ IL+ NG D ++L +I  V    +
Sbjct: 1   MHHFFVSQDQIEESFIRILGPDVNHIKNVLRMGAGEEILVSNGVDKDYLCQILDVASAEV 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+       T+  + +       K ++++ +IQK+VE+G+  I PV T+        +
Sbjct: 61  TAKILSVEEGGTELPARLYLFQGLPKGDKMELIIQKAVELGVYQIIPVETKRAVVRLDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENS 177
                + R R  + SAA+Q   L +P +    T    L        IV   +       +
Sbjct: 121 KEESKLRRWRAVSESAAKQSGRLIIPEVAGVMTFPEALAFGKELDMIVIPFEHAKDMAKT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L +I    +V I IGPEGG+   E +    L     ++LG RILR++TA +A ++++
Sbjct: 181 KEILSSIRPGMSVGIFIGPEGGFEDSEMDLAERLG-AKQITLGKRILRTETAGLAIVSVL 239

Query: 238 QAICGD 243
                D
Sbjct: 240 AFQLED 245


>gi|157844011|gb|ABV84512.1| hypothetical protein RMA_0218 [Rickettsia massiliae MTU5]
          Length = 283

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + + D  HY+  VLR+K  D + LFNG DGE+L++I+ 
Sbjct: 41  MKYN----RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIND 96

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK+ +  +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR  Q 
Sbjct: 97  IGKNNLSVRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQF 156

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    +NS+ 
Sbjct: 157 RSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSIL 214

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           ++ +     ++ I++GPEGG+ ++E E L S      +SLG  ILR++TAA+ A  +VQ 
Sbjct: 215 RISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITA--IVQV 272

Query: 240 IC 241
             
Sbjct: 273 RL 274


>gi|83720201|ref|YP_441739.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
           thailandensis E264]
 gi|257137908|ref|ZP_05586170.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
           thailandensis E264]
 gi|83654026|gb|ABC38089.1| conserved hypothetical protein TIGR00046 [Burkholderia
           thailandensis E264]
          Length = 256

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 9   AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKR 67

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   +          V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 68  GALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 127

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADET 171
            +     +   R    ++ EQC    +P + P    +  L            +++ +   
Sbjct: 128 GERADKRVSHWRGVVRASCEQCGRNRVPGVAPVRGFDAWLDALPDAPAAGELRLLLSPRA 187

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L       +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 188 SV---PFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFA-ALSLGPRVLRTET 240


>gi|114319523|ref|YP_741206.1| hypothetical protein Mlg_0361 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225917|gb|ABI55716.1| 16S rRNA m(3)U-1498 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 248

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 16/246 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-- 66
           R+ VD PL          +   +L    R++ GD ++LF+G+ GE+ +++  + +     
Sbjct: 5   RIHVDTPLAAGATLTLPAETTQHL-KAFRLRPGDELVLFDGRGGEYRARLEALERREARL 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
             + +    +     +  +    +  R+D+ +QK+VE+G+  I PV T            
Sbjct: 64  ALLGHHPVERESPLALTLVQGVARGERMDFTVQKAVELGVRRIVPVFTDNGVVRLEARRR 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENS 177
                  +   ++A EQC    +P + PP  L  +   L   +    +V    T G  + 
Sbjct: 124 EKRRQHWQRVAVAACEQCGRNRVPEVAPPRPLAEVWPELAGGEAGQGLVL---TPGGRSL 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                A   +    +LIGPEGG    E           P+ LGPRILR++TA + A+A +
Sbjct: 181 RALADAHPELRRAWLLIGPEGGLSDAEVARACEAG-AEPVGLGPRILRTETAGITALAAL 239

Query: 238 QAICGD 243
           Q + GD
Sbjct: 240 QLLHGD 245


>gi|223985669|ref|ZP_03635717.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM
           12042]
 gi|223962360|gb|EEF66824.1| hypothetical protein HOLDEFILI_03023 [Holdemania filiformis DSM
           12042]
          Length = 258

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++++F+     + +  +    Q H+L  VLRMKEG+ + + + +   +   +   G+  
Sbjct: 21  NMQQIFIQQKTHVGSVIEPDPQQRHHLQRVLRMKEGETLRVIDAEGAVFCGVLDGAGQ-- 78

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
               E     +     +  +   IK  R D+++QK  E+G+  I P  +        +  
Sbjct: 79  IQITELLDEDRELPVTLTLVAGLIKGERWDWLLQKCTELGVSRIVPFQSSRTVVKLESDK 138

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R +     A++QC     P +  P  L            + + DE         
Sbjct: 139 VDKKLERWQKIVQEASQQCKRTQRPQVCAPIELADAGAWRSEQNFVAYEDEALHGGLLSA 198

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +L       +V ++IGPEGG+   E E L +  +    SLG RILR++TAAVAA+ L  A
Sbjct: 199 QLE---KGRSVTLVIGPEGGFSPAEIERLQTQGY-RCCSLGKRILRAETAAVAAVCLAGA 254

Query: 240 IC 241
           + 
Sbjct: 255 VL 256


>gi|325287492|ref|YP_004263282.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
           lytica DSM 7489]
 gi|324322946|gb|ADY30411.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
           lytica DSM 7489]
          Length = 235

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 8/237 (3%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++ LF +  L    +Q     ++  ++  VLR  EGD + + NG    + +KI     K 
Sbjct: 1   MQ-LFYNSTLDNSISQFVFPPEESKHIVKVLRKVEGDELYITNGNGYLFTAKIMVADVKK 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            + ++  + +       +    +P K  +R ++ ++K+ E+G+  I P+I  +++     
Sbjct: 60  CKAQITSKEKKHRPMHWLHIAVAPTKMNDRFEWFLEKATEIGVDEITPIICDHSERKVLK 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R+     SA +Q     LP +  P      +   +H   +  A   C  E  +E    
Sbjct: 120 LERMEKVLQSAMKQSLQTYLPKLNAPIPYAEFV-QKEHKDLLFIAH--CEEEEKVELKRR 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +A   +V ILIGPEG + S E +  +   F+ P+SLG   LR++TAA+ A A V  I
Sbjct: 177 VAADKDVTILIGPEGDFSSAEIKQAYVNGFI-PVSLGKNRLRTETAAIVACATVAMI 232


>gi|258424005|ref|ZP_05686887.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257845626|gb|EEV69658.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 250

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R      I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVSSKIILTFNDQTVYLCEIADITSDK 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    +  
Sbjct: 121 AKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + A
Sbjct: 181 LSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|291533062|emb|CBL06175.1| RNA methyltransferase, RsmE family [Megamonas hypermegale ART12/1]
          Length = 246

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65
           ++RLF+D  L      K  GD   +L + +R++      + + +     +K IS    ++
Sbjct: 1   MRRLFIDECLSEDITIK--GDDAKHLLYAMRVRPEQVFTIVDKESKVAQAKVISCTSDTV 58

Query: 66  RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           + K+    +        +V       K +++++++QK+VE+G  ++ PV++ +       
Sbjct: 59  QLKLLQYIEDADTEAPIEVVVAQCLPKGDKMEFIVQKAVELGAASVVPVVSHHCVVKYDE 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       + +     A +QC     P +    +LE L +++    + +  +     E S
Sbjct: 119 KKKLARQQKWQKIADEAVKQCGRTIKPTVEAIVSLEQLAQDYTDYARFICYE--AEDEQS 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +++   A      ILIGPEGG+  EE +      F   +S+G RILR++TA++AA+ +V
Sbjct: 177 FKEMLQSADSKKYLILIGPEGGFAPEEVQLCKDAGF-KSISMGKRILRAETASIAALTIV 235

Query: 238 QAICGD 243
               GD
Sbjct: 236 MYEKGD 241


>gi|83589451|ref|YP_429460.1| hypothetical protein Moth_0587 [Moorella thermoacetica ATCC 39073]
 gi|83572365|gb|ABC18917.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 246

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 8/240 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+   +         G+  H+   VLR+++G++I L +     + ++I  + +  +   
Sbjct: 5   FFLPIVVAPGETVLLEGENAHHAIRVLRLRQGESITLADSNGQGYRAEIVAITEGRVAAA 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           ++    S   +  V       K +++D +I+K  E+G+  I  + T  +      Q    
Sbjct: 65  IKDPLDSPEPRVRVTLYQGWPKGDKMDLIIEKCTELGVDRIVVLATERSIPRPDQQTCAR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
             +R +    +AA Q     +P +  P  L   L     +  ++   E   + +    L 
Sbjct: 125 RRERWQQKAHAAARQSRRHRIPVVDGPLGLAEALVKLRPDTLLLVPWEEERTRDLKSILA 184

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +     +A+LIGPEGG    E +       + PL+LGPRILR++TA +A +A +    G
Sbjct: 185 TVPADRELALLIGPEGGLSRAEVDLACRFGGL-PLTLGPRILRTETAGLACLAAIMYAMG 243


>gi|27468182|ref|NP_764819.1| hypothetical protein SE1264 [Staphylococcus epidermidis ATCC 12228]
 gi|57867034|ref|YP_188721.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
           epidermidis RP62A]
 gi|251810994|ref|ZP_04825467.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|293366462|ref|ZP_06613139.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315728|gb|AAO04863.1|AE016748_97 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637692|gb|AAW54480.1| conserved hypothetical protein TIGR00046 [Staphylococcus
           epidermidis RP62A]
 gi|251805504|gb|EES58161.1| protein of hypothetical function DUF558 [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|291319231|gb|EFE59600.1| RsmE family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 253

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +L+R F++              + YH++ +V+R KEG NI++    +  +  KI  +  +
Sbjct: 3   NLQRYFMNQSADENQCFFIENKEDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQ 62

Query: 64  SIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           SI  K VE Q  +     ++      IK ++ ++MIQK+ EMG      V    +     
Sbjct: 63  SIEIKLVEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLN 122

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  + R +     AAEQ   LT+P I   + L+ +         ++ A E      
Sbjct: 123 DSKVEKKLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + +        V I+ GPEGG    E      +   T + LGPRILR++TA + 
Sbjct: 183 ELSQFKQTIKQFKTQDRVLIIFGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ V   
Sbjct: 241 ALSAVSYE 248


>gi|300703042|ref|YP_003744644.1| ribosomal RNA small subunit methyltransferase e (rsme) [Ralstonia
           solanacearum CFBP2957]
 gi|299070705|emb|CBJ42000.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
           [Ralstonia solanacearum CFBP2957]
          Length = 249

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 115/249 (46%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R ++D  L   T          ++ HVLR+  GD++ LF+G   E+ +++  + +  +
Sbjct: 3   LPRFYIDSLLAPHTTVTLPESVARHI-HVLRLAVGDDVQLFDGSGLEFRARLDAINRRDV 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   ++  T+    +         +++D++I+K+VE+G+ AI P+ T  +      +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERSVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGSEN 176
                +   +    +A EQC    +P + P TTL   L         +++ +     S  
Sbjct: 122 RAAKRVQHWQALVQAACEQCGRARVPAVSPVTTLRDWLTVAKASDRARVMLSPRGSQSLT 181

Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                         + +LIGPEGG   +E+    +  ++ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAAQSRERIDSAGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            +    G++
Sbjct: 241 ALHTALGEF 249


>gi|323143545|ref|ZP_08078222.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066]
 gi|322416608|gb|EFY07265.1| 16S rRNA methyltransferase RsmE [Succinatimonas hippei YIT 12066]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQ 79
           +   S +   +L  VLR KEGD   +F+G   E+ +K+   G     ++ E  + S    
Sbjct: 2   EITLSENGSGHLCRVLRFKEGDLFNIFDGIGHEFKAKLVRSGNKAAAQILETVANSSESP 61

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133
             ++      + +++D  +QK+VE+G+  I P+ +         + +   +D  +   +S
Sbjct: 62  LQIELGQVISRGDKMDLTVQKAVELGIFEITPLTSIRCNVKLDEKRSFKKVDSWQKIAVS 121

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           A EQ     +P +   T L+           +     +     +L+   A      + +L
Sbjct: 122 ACEQSGRSFVPKVNEITDLKTWCSKDREALNLTLDPLSSLRLKNLKPTAA-----KIRLL 176

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG   +E        F+  +SLGPRILR++TAA+ A++++ +  GD
Sbjct: 177 IGPEGGLSQDEINDAAENGFI-GVSLGPRILRTETAALVALSILGSHFGD 225


>gi|126439667|ref|YP_001060446.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia pseudomallei
           668]
 gi|237813838|ref|YP_002898289.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
           MSHR346]
 gi|254199135|ref|ZP_04905550.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13]
 gi|126219160|gb|ABN82666.1| 16S rRNA methyltransferase RsmE [Burkholderia pseudomallei 668]
 gi|169656965|gb|EDS88362.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei S13]
 gi|237506144|gb|ACQ98462.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei
           MSHR346]
          Length = 255

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239


>gi|229220687|ref|YP_620039.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
           AU 1054]
 gi|229220796|ref|YP_834281.2| hypothetical protein Bcen2424_0635 [Burkholderia cenocepacia
           HI2424]
          Length = 255

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           + + R FVD  L          D   +   VLR++ GD + LF+G  G++ +++  V K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 66

Query: 64  SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           S   +V+  +         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 S---SPFASLPDAPPAAAVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 239


>gi|105891901|gb|ABF75066.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116646747|gb|ABK07388.1| protein of unknown function DUF558 [Burkholderia cenocepacia
           HI2424]
          Length = 262

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           + + R FVD  L          D   +   VLR++ GD + LF+G  G++ +++  V K 
Sbjct: 15  AAVPRFFVDAALRADATLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 73

Query: 64  SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           S   +V+  +         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVAGFNAWLDALPAAPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 S---SPFASLPDAPPAAAVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 246


>gi|51473368|ref|YP_067125.1| hypothetical protein RT0159 [Rickettsia typhi str. Wilmington]
 gi|51459680|gb|AAU03643.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 240

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 135/241 (56%), Gaps = 8/241 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ +   D  HY+  VLR+K  D++ +FNG DGE+L+ I+ 
Sbjct: 1   MKYN----RIYINSHLAENSKIELVRDNVHYVKTVLRLKINDSLRIFNGSDGEFLAHITK 56

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK+ I   +  Q +    +  +    + IK+++L  +I  + ++G+  I P+IT   Q 
Sbjct: 57  IGKNNISVVLTEQLKKAYIEPALTLAVAIIKSDKLMLIINMATQLGITKIIPLITSRCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + L  P I    TL+  LK   +N  I++A+E    +NS+ 
Sbjct: 117 KTVNIERLIKCVIEATEQSERLNPPIIEHAITLKDYLK--KNNNLILYANEHEKVKNSIL 174

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           ++ ++    ++AI+IGPEGG+ ++E E L        +SLG  ILR++TAA+  +A V+ 
Sbjct: 175 RISSLLA-NDIAIIIGPEGGFTNDELELLALYKNTQSISLGSNILRTETAAITVIAQVRL 233

Query: 240 I 240
           +
Sbjct: 234 L 234


>gi|229597240|ref|YP_001807272.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria
           MC40-6]
          Length = 255

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          +   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 66

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                              V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 SV---PFASLPDAPPAAEVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 239


>gi|150025667|ref|YP_001296493.1| hypothetical protein FP1617 [Flavobacterium psychrophilum JIP02/86]
 gi|149772208|emb|CAL43684.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 234

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 8/231 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +         +     ++  ++  VLR  EGD + + NG    + +K+     K  
Sbjct: 1   MQLFYNPEINTELKEFSFDKEESKHIIKVLRKTEGDILHVTNGLGNLFSTKVILASEKKC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+E     Q     +    +P K  +R ++ ++K+ EMG+  I P+I   ++      
Sbjct: 61  TVKIETTETYQPTDFYIHLAVAPTKMNDRFEWFLEKATEMGVHEITPIICDRSERKIVKN 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHA 183
           +R     +SA +Q     LP +  P + +  + +  D N  I   +ET    N     + 
Sbjct: 121 ERFDKIILSAMKQSLQFFLPKLNEPISFKDFINEQHDGNLCIAHCEET----NKKLLKNT 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           I       ILIGPEG +  +E +   +  ++ P+SLG   LR++TAAV A 
Sbjct: 177 IKAKEKYTILIGPEGDFSEKEIQLALANNYI-PVSLGNTRLRTETAAVVAC 226


>gi|217420819|ref|ZP_03452324.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           576]
 gi|217396231|gb|EEC36248.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           576]
          Length = 255

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTTRGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239


>gi|332531193|ref|ZP_08407106.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC
           19624]
 gi|332039300|gb|EGI75713.1| 16S ribosomal RNA methyltransferase RsmE [Hylemonella gracilis ATCC
           19624]
          Length = 248

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 19/246 (7%)

Query: 7   LKRLFVDFP----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           + R          L    + +   +   +   VLR++ GD + LFNG+ GEW + +  +G
Sbjct: 1   MPRFHCPEEPSSVLRAGGEVELPPETARH-VQVLRLQPGDTLTLFNGRSGEWTATVLRMG 59

Query: 63  K-SIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
           + S+  +V++    + +   DV          R+D++++K+VE+G+ +I+P+ T  +   
Sbjct: 60  RASVTVRVDHHHAVEREAPLDVHLAVGMPANERMDWLVEKAVELGVASIQPLQTERSVLR 119

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADET 171
              +         +   I+A EQC    LP ++    L+ +        Q   ++  D+ 
Sbjct: 120 LSGERALKKQLHWQGIAIAACEQCGRNRLPPVHAVRPLQDVAAWSPPEVQRRFVLSLDDD 179

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           C   +  + L +     +V +L GPEGG    E++   +  F  P+SLG R LR++TA +
Sbjct: 180 CVPIS--QVLASRGSTGSVLLLSGPEGGLSPTEEQAARAAGF-QPVSLGQRTLRAETAPL 236

Query: 232 AAMALV 237
           AA+A++
Sbjct: 237 AALAVL 242


>gi|221133775|ref|ZP_03560080.1| hypothetical protein GHTCC_02514 [Glaciecola sp. HTCC2999]
          Length = 244

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 14/231 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R+FV  PL +        +  H+L +VLR+K+   ++LFNG   E+ ++I+ V K  
Sbjct: 2   RITRVFVPEPLIVDAALTIDNESAHHLINVLRVKQDQPLVLFNGDGNEYSAQINEVHKRK 61

Query: 66  RFKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                    +     +  +       K +R++ ++QK+ E+G+  I P+IT+        
Sbjct: 62  VIVNVDAKLAIGAESKFPIHLGQGIAKGDRMETVLQKATELGVTEITPIITQRCNVKLSP 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + +     I A EQ     LP ++PP TL    K      +I F       +  
Sbjct: 122 ERWAKKLVQWEKVIIGACEQSGRNVLPILHPPITLSEWCKQSTEQYRITFDPHA---QQH 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L+ L    H   + ILIGPEGG+   E        F T + +GPR+LR++T
Sbjct: 179 LQALPVTQHG--IRILIGPEGGFSEAETYGAEQTGFNT-VKIGPRVLRTET 226


>gi|257084824|ref|ZP_05579185.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992854|gb|EEU80156.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 250

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K   K + + YH++  V+RM   D   L        L++I  +  +  
Sbjct: 1   MQRYFIKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  ++  +   +    +V       K ++L++++QK  E+G            V+    +
Sbjct: 61  YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++     AAEQ      P +      + ++  +D    ++ A E    +   
Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDTYDTVLVAYEESAKQGEK 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +         + +L GPEGG+  +E E            LGPRILR++TA +  +
Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SAVSY 244


>gi|134280575|ref|ZP_01767286.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           305]
 gi|134248582|gb|EBA48665.1| conserved hypothetical protein TIGR00046 [Burkholderia pseudomallei
           305]
          Length = 255

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         ++++++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMEWVIEKAVELGVAAVAPLSTARGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239


>gi|289423857|ref|ZP_06425650.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus
           anaerobius 653-L]
 gi|289155634|gb|EFD04306.1| ribosomal RNA small subunit methyltransferase E [Peptostreptococcus
           anaerobius 653-L]
          Length = 258

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 21/256 (8%)

Query: 7   LKRLFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           + R FVD    I TQ +     GD   +++ VLR   GD + + +G++ E++ +I  + K
Sbjct: 1   MDRFFVDRE-NIDTQARNLVILGDDVKHISKVLRYSVGDELEVCDGQNKEYICRIDSMDK 59

Query: 64  SIR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
           +      +E +   +     ++      K+ +++ ++QK  E G+  I  V T  +    
Sbjct: 60  TEIGLSIIEEKDVDRESPIRIKLYQGLPKSTKMEIILQKLTECGVAEIILVNTARSVVNI 119

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             + +   +DR +     AA+Q     +P +    + +  L++ + N   +   E  GS 
Sbjct: 120 DDKKSEKKLDRWQRIVYEAAKQSKRGIIPDLKGIYSFKEALRDMEVNDINIMPYEEEGSL 179

Query: 176 NSLEKLHA------IAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
              + L +      I    +  + I IGPEGG+  +E   +        + +GPRI R++
Sbjct: 180 GIKDLLRSEGIQQIIKENKSATIGIFIGPEGGFTEDENAKVKEAGG-HSVKMGPRIFRTE 238

Query: 228 TAAVAAMALVQAICGD 243
           TA++ A ++     GD
Sbjct: 239 TASIVATSICLYELGD 254


>gi|253732230|ref|ZP_04866395.1| protein of hypothetical function DUF558 [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724019|gb|EES92748.1| protein of hypothetical function DUF558 [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 253

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 15/248 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           +++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +   
Sbjct: 3   NVQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSD 62

Query: 64  SIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
            I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +     
Sbjct: 63  KIAVDLKEKQNINTELSVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLN 122

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +     AAEQ   L +P I   + L+ +    D+   I+ A E    + 
Sbjct: 123 EAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDG 182

Query: 177 SL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L    + L        V ++ GPEGG    E     +    T + LGPRILR++TA + 
Sbjct: 183 ELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTS--TVVGLGPRILRAETAPLY 240

Query: 233 AMALVQAI 240
           A++ +   
Sbjct: 241 ALSAISYE 248


>gi|332520272|ref|ZP_08396734.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4]
 gi|332043625|gb|EGI79820.1| protein of unknown function DUF558 [Lacinutrix algicola 5H-3-7-4]
          Length = 234

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +       + Q   S ++  ++  VLR ++GD + + NGK   + + I     KS 
Sbjct: 1   MQLFYSPDISKNQDQFTFSKEESRHIVKVLRKRDGDILHITNGKGDVFTAVILIAAIKSC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             +++          ++    +P K  +R ++ ++K+ E+G+ +I P+I  +++      
Sbjct: 61  TVEIKEVVTQNPLNYNLHLAVAPTKMNDRYEWFLEKATEIGISSITPIICDHSERKVIKE 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DR      SA +Q     LP + P    +  LK  D N  +  A     ++ SL+K+  +
Sbjct: 121 DRFEKILQSAMKQSLSAYLPKLNPAIAFKEFLKQ-DFNSALYIAHCEETNKKSLKKV--L 177

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               ++ ILIGPEG + ++E E   +  ++ P++LG   LR++TAA+ A 
Sbjct: 178 QTNTDITILIGPEGDFSTKEIELALANNYI-PVTLGETRLRTETAAIVAC 226


>gi|222053521|ref|YP_002535883.1| protein of unknown function DUF558 [Geobacter sp. FRC-32]
 gi|221562810|gb|ACM18782.1| protein of unknown function DUF558 [Geobacter sp. FRC-32]
          Length = 246

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--- 63
           ++R  VD       +   +G  Y ++A VLR+K+G  ++L +G+ GE+   I  +     
Sbjct: 1   MRRFIVDKRDIDDAEAVITGYLYRHMAKVLRLKQGTAVMLTDGEGGEYEGVIESIDSTSL 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +R               +       K ++L+Y++QK  E+G   I P     +      
Sbjct: 61  RVRVVRRETLMVDDGGPQITIYQGLPKGDKLEYILQKCTELGAAGIVPFAASRSIARISP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q +   +DR +     AA Q    T+P +     L  +L+   H+ +++  +E   +   
Sbjct: 121 QRSAGRVDRWQKIAAEAARQSRRATVPRVSLADDLSQVLQLAQHSVKLLLWEEEKANL-L 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  ++   ++ +LIGPEGG+  EE     S  F+ P+S+G RI+R++TA++  ++++
Sbjct: 180 RETLSGLSAPNDIGVLIGPEGGFSPEEAAAASSAGFI-PISMGRRIVRTETASLIILSIL 238

Query: 238 QAICGD 243
           Q   GD
Sbjct: 239 QYHWGD 244


>gi|70726340|ref|YP_253254.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447064|dbj|BAE04648.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 250

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 107/247 (43%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D       +   +  +  H++ +V+R   G+ I++       + S+I  +  +S
Sbjct: 1   MQRYFIDQNADESQRFFITNKEDIHHITNVMRNTIGNQIIITFKDKIVFKSEIITIENES 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I  K+  Q    ++    V      IK ++ +++IQK+ E+G  +   V    +      
Sbjct: 61  IEIKLIEQIDINSELPVQVTICSGLIKADKYEWLIQKATELGADSFIVVEMDRSVVKLTP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I   + L  +    +H   I+ A E       
Sbjct: 121 NKVQKKLERWQKIIKEAAEQSYRLIIPNIIFKSNLNEIYDTINHYDYILLAYEDEAKRGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +    E L        + ++ GPEGG+  +E   L+   F   + LGPRILR++TA + A
Sbjct: 181 VSLFKETLKKFKTNDRILLIFGPEGGFSEKEITLLNETSFN--VGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|17547482|ref|NP_520884.1| hypothetical protein RSc2763 [Ralstonia solanacearum GMI1000]
 gi|17429785|emb|CAD16470.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 249

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 118/249 (47%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R  +D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +   
Sbjct: 3   LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGQEFRARLDAINRRDA 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   ++  T+    +         +++D++I+K+VE+G+ AI P+ T         +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQTERGVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   +    +A EQC    +P + P   L   L     + +        GSE   
Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPAVSPVAPLRDWLAAAKASARARVMLSPRGSEPLT 181

Query: 179 E-KLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +  + +   I +  + +LIGPEGG   +E+    +  ++ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAVQSRERIGSAGIELLIGPEGGLSPDEEALAEAAGYL-PLTLGRRILRTESAALVAVS 240

Query: 236 LVQAICGDW 244
            + A+ G++
Sbjct: 241 ALHAVLGEF 249


>gi|255656430|ref|ZP_05401839.1| hypothetical protein CdifQCD-2_12199 [Clostridium difficile
           QCD-23m63]
 gi|296450123|ref|ZP_06891884.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08]
 gi|296878504|ref|ZP_06902509.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07]
 gi|296260886|gb|EFH07720.1| RsmE family RNA methyltransferase [Clostridium difficile NAP08]
 gi|296430311|gb|EFH16153.1| RsmE family RNA methyltransferase [Clostridium difficile NAP07]
          Length = 252

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 12/248 (4%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FV+              G+   +++ VLR K G+ + + +  + E++ +I  + KS
Sbjct: 1   MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRYKPGEKLEICDKNNNEYICEIVNIDKS 60

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           I     +E    ++  +  ++      K  +++ ++QK  E+G+  I  V T+ +     
Sbjct: 61  IVNLNILEKVDINRESELKIRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVAKVD 120

Query: 123 NM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           +       +R       AA+Q     +P +    T +  L++   N   +   E   +  
Sbjct: 121 DKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLTFKEALEDMKKNNINICPYENERTVP 180

Query: 177 SLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               L    ++I +V I IGPEGG+  EE E +        +SLGPRILR++TA+V A  
Sbjct: 181 MKHALQNCDSNIDSVGIFIGPEGGFSEEEIEQIQKNN-CNVVSLGPRILRTETASVVAST 239

Query: 236 LVQAICGD 243
           +      D
Sbjct: 240 IALYELSD 247


>gi|313897356|ref|ZP_07830899.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2]
 gi|312957726|gb|EFR39351.1| RNA methyltransferase, RsmE family [Clostridium sp. HGF2]
          Length = 252

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+           + +Q H++  V+RM++GD I + +      L+++ Y  +   
Sbjct: 1   MQQYFVNTLAMPGELIPMTKEQTHHIRRVMRMQQGDVIRVADNSGRVLLAEVEYHQEEAA 60

Query: 67  FKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            +V  + R       ++      IK  + DY++QKS E+G+  I P ++         + 
Sbjct: 61  ARVVREVRDCSQTSVELILAQGMIKGEKWDYLLQKSAELGVAEIIPFVSSRCVVKIKDEK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-CGSENSL 178
           +   + R       A EQC   TL  + PP T    L   D + +++  ++  C SE   
Sbjct: 121 SEKKIVRWNKILCEACEQCKRSTLVRLQPPCTFSQ-LSQIDADLRLIAYEDADCKSERLC 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E L A      V +++G EGG+ ++E E L +  F   +SLG RILR++TAA++ +
Sbjct: 180 EVLRAHPSPKRVLMVVGSEGGFSADEVEALTATGF-HRVSLGGRILRAETAAISLL 234


>gi|163795742|ref|ZP_02189707.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199]
 gi|159179038|gb|EDP63573.1| hypothetical protein BAL199_07568 [alpha proteobacterium BAL199]
          Length = 253

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 3/217 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RL+V  PL           Q HYL  VLR+  G+ + LFNG+DGEWL++I  +GK     
Sbjct: 8   RLYVTAPLAEGAVIGLESAQAHYLRSVLRLGPGEAVALFNGRDGEWLARIDGIGKGWASL 67

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            V  Q+  Q  + D+   F+PIK  R+D+  QK+ E+G   + PV+TR+T     N DR+
Sbjct: 68  VVANQTHPQCPEPDLWLAFAPIKRARIDFTAQKATELGASLLWPVMTRHTMVDRVNTDRL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH- 186
               I AAEQ D LT+P +  PT+L+ L+  W  +  ++  DE+       E L A    
Sbjct: 128 TANAIEAAEQSDRLTVPEVREPTSLDKLIAEWPEDRALLLCDESGTGLGIAEALAAAGPS 187

Query: 187 -IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222
                  +IGPEGG+  EE + L  LPFVT + LGPR
Sbjct: 188 VRRRAGFVIGPEGGFAQEELDRLRKLPFVTAVGLGPR 224


>gi|56963427|ref|YP_175158.1| hypothetical protein ABC1662 [Bacillus clausii KSM-K16]
 gi|56909670|dbj|BAD64197.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 248

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+          + +GD   ++  V+RM+ GD ++  N      L ++S    S  
Sbjct: 1   MQRYFIKNEQLTNEVVEITGDDAAHITKVMRMQAGDEVICVNEDGKAVLVQLSQFDPSSV 60

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQ 118
               +            V       K ++L+ ++QK  E+G  A  P      ++    +
Sbjct: 61  KGTVLNEMDNETELPIRVTVAQGLPKGDKLETIVQKGTELGAYAFAPFSASRSIVKWDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R++     AAEQ   L +P +  P  L+ + +   H    +  DE    +   
Sbjct: 121 KGAKKTERLQKIAKEAAEQAHRLFVPNVAKPVPLKVVAEALTHYDVCIVCDEEEAKQGEK 180

Query: 179 EKLHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             L      +    ++ +++GPEGG   EE   L +   V+  S+GPRI+R++TAA+  +
Sbjct: 181 ANLKRAFAMLKPGLSLLVIVGPEGGLTREEVALLSAKGAVS-CSIGPRIVRTETAAMYVL 239

Query: 235 ALVQAIC 241
           A +    
Sbjct: 240 AALSYQF 246


>gi|300690423|ref|YP_003751418.1| ribosomal RNA small subunit methyltransferase E (rsmE) [Ralstonia
           solanacearum PSI07]
 gi|299077483|emb|CBJ50108.1| putative ribosomal RNA small subunit methyltransferase E (rsmE)
           [Ralstonia solanacearum PSI07]
          Length = 249

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 13/249 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R  +D PL   T          ++ HVLR+  GD++ LF+G   E+ +++  + +   
Sbjct: 3   LPRFHIDSPLAPHTTVTLPESVARHI-HVLRLAVGDDVCLFDGSGREFRARLDAINRRDA 61

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   ++  T+    +         +++D++I+K+VE+G+ AI P+           +
Sbjct: 62  TASLADATQPDTEARYAITLAQGIAGGDKMDWLIEKAVELGVHAIAPLQAERGVVRLSGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSEN 176
                +   +    +A EQC    +P + P  TL   L         +++ +     S  
Sbjct: 122 RAVKRVQHWQALVQAACEQCGRARVPAVSPVATLRDWLAAAKTSDRARVMLSPRGSQSLT 181

Query: 177 SLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                         + +LIGPEGG   +E+    +  ++ PL+LG RILR+++AA+ A++
Sbjct: 182 QWAAQSRERIDSTGIELLIGPEGGLSPDEESLAEAAGYL-PLTLGRRILRTESAALVAIS 240

Query: 236 LVQAICGDW 244
            + AI G++
Sbjct: 241 ALHAILGEF 249


>gi|315635117|ref|ZP_07890395.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393]
 gi|315476079|gb|EFU66833.1| 16S rRNA methyltransferase RsmE [Aggregatibacter segnis ATCC 33393]
          Length = 211

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           M+ GD + LF+G +  + + I+ + K       +  Q   +     +       +  R++
Sbjct: 1   MQPGDQLELFDGSNHIYQAVINAITKKSVDVDILSRQLDDRESPLAIHLGQVISRGERME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKSVE+G+  I P+ +         +     + + +   I+A EQC   T+P I P 
Sbjct: 61  FTIQKSVELGVNVITPLWSERCGVKLDGERMEKKIQQWQKIAIAACEQCGRNTIPEIRPL 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             L+      D   ++        S  +L  +        V +LIG EGG   +E     
Sbjct: 121 MKLQQWCAEPDDALKLNLHPRASYSIRTLPAISKA----GVRLLIGSEGGLSPQEIAQTE 176

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              FV  + LG R+LR++TAA+AA+  +Q   GD
Sbjct: 177 EHGFVE-VLLGKRVLRTETAAMAAITALQVCFGD 209


>gi|161986456|ref|YP_311922.2| 16S ribosomal RNA methyltransferase RsmE [Shigella sonnei Ss046]
          Length = 244

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 19/249 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN---GKDGEWLSKISYVG 62
            + R++    L   +      D  ++     R   G      N   G    + ++I+   
Sbjct: 2   RIPRIYHPETLTSPSHIALCEDAANHNRA--RTGHGARGRGCNCLKGTTQVFDAEITSAS 59

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
           K        + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +      
Sbjct: 60  KKSVEVNVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVK 119

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +  +  + + +   I+A EQC    +P I P   LE      D   ++        S
Sbjct: 120 LDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNS 179

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 180 INTLPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAI 233

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 234 TALQVRFGD 242


>gi|224476685|ref|YP_002634291.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421292|emb|CAL28106.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 250

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F++    I  +   +  +  H+++ V+R +  D I++       +  KI  +    
Sbjct: 1   MQRYFINQNADINQRFFITEKEDIHHISTVMRNQPNDFIIVTFNHGKVYKCKIISIHNEE 60

Query: 66  RFKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +          +V      +K ++ ++++QK  E+G     PV    +      
Sbjct: 61  IEIELNEELNSDTELPVEVTICSGLLKADKYEWLLQKCTELGASHFIPVQMDRSIVKLNQ 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + R       AAEQ   L +P     + L+ +  N D    ++ A E    E  
Sbjct: 121 NKIEKKLVRWNKIVKEAAEQSYRLIIPTFEFISNLKQVYVNIDKYDYVLVAYEDAAKEGE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +    + L        + I+ GPEGG   EE            + LG RILR++TA + A
Sbjct: 181 ISQLKKTLQQFQSGNRILIVFGPEGGLSEEEVALF--QGNSEIVGLGKRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|238021924|ref|ZP_04602350.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147]
 gi|237866538|gb|EEP67580.1| hypothetical protein GCWU000324_01828 [Kingella oralis ATCC 51147]
          Length = 239

 Score =  232 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++  PL   T      +   ++ HVLR+  GDNI LFNG   ++ + +  +GK   
Sbjct: 1   MPRFYLPAPLAPHTTFSLPDNIVRHI-HVLRLNAGDNITLFNGTGSDFDATLQEIGKRHA 59

Query: 67  FKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                  R    +S  ++  + +     R+D+ +QKSVE+G+ AI+P+I+          
Sbjct: 60  ECHITAQRQPENESALNITLVQAVSSGERMDFTLQKSVELGVRAIQPMISERCVVRLSGD 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   I+A EQ     +P + P  +    L+       ++       S    
Sbjct: 120 RADKRVQRWQDIVIAACEQSGRSIVPTVLPIVSFSDYLRQMPPELHLMM------SLRRA 173

Query: 179 EKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + L  IA +  ++ ++IGPEGG+   E++       V  ++LG R+LR++TAA+AAMA +
Sbjct: 174 QALRDIAPVSQSLRLMIGPEGGWTPAEEQAALDAG-VQTITLGKRVLRTETAAMAAMAAM 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QVLWGDF 239


>gi|167904305|ref|ZP_02491510.1| hypothetical protein BpseN_18786 [Burkholderia pseudomallei NCTC
           13177]
          Length = 262

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVIRLS 135

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 195

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 248


>gi|257416411|ref|ZP_05593405.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158239|gb|EEU88199.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 250

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K   K + + YH++  V+RM   D   L        L++I  +  +  
Sbjct: 1   MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  ++  +   +    +V       K ++L++++QK  E+G            V+    +
Sbjct: 61  YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++     AAEQ      P +      + ++  +D    ++ A E    +   
Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPTVSLVKKTQEIIAQFDSYDTVLVAYEESAKQGEK 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +         + +L GPEGG+  +E E            LGPRILR++TA +  +
Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SAVSY 244


>gi|171320065|ref|ZP_02909134.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5]
 gi|171094694|gb|EDT39739.1| protein of unknown function DUF558 [Burkholderia ambifaria MEX-5]
          Length = 262

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          +   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 15  AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 73

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                    +         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  NALAQIEAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTVRGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L +      D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDSLPPAPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 S---IPFVSLPDAPPATAVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246


>gi|308174332|ref|YP_003921037.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7]
 gi|307607196|emb|CBI43567.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens DSM 7]
          Length = 256

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 103/248 (41%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     +        +G+  H++A+V+RM  G  I+  +    E L  +  + K
Sbjct: 1   MQRYFIELTKQEMDETPDFHITGEDVHHIANVMRMSAGGRIICCSKDGHEALCLLKEISK 60

Query: 64  SI--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                   E+   ++     ++      K ++L+++IQK  E+G     P     +    
Sbjct: 61  DHISCSVAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    T   LL+  ++  + V A E    +
Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ 180

Query: 176 NS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                   +L ++    ++ I+ GPEGG    E + L     V    LGPRILR++TA +
Sbjct: 181 GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ V  
Sbjct: 240 YALSAVSY 247


>gi|328554279|gb|AEB24771.1| 16S ribosomal RNA methyltransferase RsmE [Bacillus
           amyloliquefaciens TA208]
 gi|328912676|gb|AEB64272.1| methylase of U1498 in 16S rRNA [Bacillus amyloliquefaciens LL3]
          Length = 256

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 16/248 (6%)

Query: 7   LKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           ++R F++     +        +G+  H++A+V+RM  G  I+  +    E L  +  V K
Sbjct: 1   MQRYFIELTKQEMDESPDFHITGEDVHHIANVMRMSAGGRIICCSKDGHEALCLLKEVSK 60

Query: 64  SI--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                   E+   ++     ++      K ++L+++IQK  E+G     P     +    
Sbjct: 61  DHISCSVAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL 120

Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            +       +R       AAEQ     +P +    T   LL+  ++  + V A E    +
Sbjct: 121 DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ 180

Query: 176 NS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                   +L ++    ++ I+ GPEGG    E + L     V    LGPRILR++TA +
Sbjct: 181 GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVQQLSEKGAVL-CGLGPRILRTETAPL 239

Query: 232 AAMALVQA 239
            A++ V  
Sbjct: 240 YALSAVSY 247


>gi|316932695|ref|YP_004107677.1| hypothetical protein Rpdx1_1321 [Rhodopseudomonas palustris DX-1]
 gi|315600409|gb|ADU42944.1| protein of unknown function DUF558 [Rhodopseudomonas palustris
           DX-1]
          Length = 257

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 3/230 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RLFVD  L    Q     DQ +YL +VLR+  G ++L FNG+DGEW + I+  
Sbjct: 3   RYDFRSPRLFVDATLAPGAQVPLERDQSNYLGNVLRLGAGADVLTFNGRDGEWRATIAGR 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +    +V  Q+R Q +  DV Y+F+P+K  RLDYM QK+VEMG G +RPV+T++TQ   
Sbjct: 63  KRPEALEVAEQTRPQDRLPDVAYVFAPLKHARLDYMAQKAVEMGAGRLRPVLTQHTQVHR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSL-- 178
            N DR+R   I AAEQC IL+L  +  P  L+  L         +VF DE     + +  
Sbjct: 123 LNTDRMRANVIEAAEQCGILSLAEVGEPIGLDRFLAGRASGERLLVFCDEDAEIADPVAA 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                 A    V +L+GPEGG+ +EE++ L   P +  L+LGPRI+R+DT
Sbjct: 183 LAAARPAATKGVDLLVGPEGGFSAEERDVLLKQPNILRLALGPRIMRADT 232


>gi|73856980|gb|AAZ89687.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 253

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 19/249 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN---GKDGEWLSKISYVG 62
            + R++    L   +      D  ++     R   G      N   G    + ++I+   
Sbjct: 11  RIPRIYHPETLTSPSHIALCEDAANHNRA--RTGHGARGRGCNCLKGTTQVFDAEITSAS 68

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
           K        + +   ++S +      +  +  ++++ IQKS+E+G+  I P+ +      
Sbjct: 69  KKSVEVNVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVK 128

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +  +  + + +   I+A EQC    +P I P   LE      D   ++        S
Sbjct: 129 LDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNS 188

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+L        +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+
Sbjct: 189 INTLPL-----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAI 242

Query: 235 ALVQAICGD 243
             +Q   GD
Sbjct: 243 TALQVRFGD 251


>gi|299531912|ref|ZP_07045312.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni
           S44]
 gi|298720087|gb|EFI61044.1| 16S ribosomal RNA methyltransferase RsmE [Comamonas testosteroni
           S44]
          Length = 246

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 121/252 (48%), Gaps = 24/252 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60
           + R     PL I  +         +   VLR + GD I LF G+       GE+ + I++
Sbjct: 1   MPRYHCPIPLHIGNELDLPAGAARH-VQVLRHQPGDVITLFEGQTGNGFTGGEFQATITH 59

Query: 61  VGKS-IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           +G+S +  +V+  S ++ + +  V  +       R+D++++K+ E+G+ +I+PV+   + 
Sbjct: 60  MGRSDVGVRVDSHSPAEREAERVVHLVVGMPANERMDWLVEKATELGVASIQPVMAARSV 119

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFA 168
                      ++R ++  +SA EQC    +P I+ P  L   L++ D       ++V  
Sbjct: 120 LKLKGDRADKKIERWQSIAVSACEQCGRNQVPVIHAPLPLADWLRSKDAPATDTTRLVL- 178

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                 E +     A      V +L GPEGG  ++E++      +  P SLG R+LR++T
Sbjct: 179 ---SLREGNQPLRTAAGDAQTVWVLHGPEGGLTAQEEDWALEQGW-KPASLGSRVLRAET 234

Query: 229 AAVAAMALVQAI 240
           A+VAA++L+   
Sbjct: 235 ASVAALSLLALE 246


>gi|256961537|ref|ZP_05565708.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256952033|gb|EEU68665.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 250

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K   K + + YH++  V+RM   D+  L        L++I  +  +  
Sbjct: 1   MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  ++  +   +    +V       K ++L++++QK  E+G            V+    +
Sbjct: 61  YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++     AAEQ      P +      + ++  +D    ++ A E    +   
Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +         + +L GPEGG+  +E E            LGPRILR++TA +  +
Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SAVSY 244


>gi|73662489|ref|YP_301270.1| 16S ribosomal RNA methyltransferase RsmE [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495004|dbj|BAE18325.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 250

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++R F+D    +  +   +     H++++V+R +  D I++       +  K+  +G + 
Sbjct: 1   MQRYFIDQNADVNQRFCITDQGDIHHISNVMRHQVDDYIIITFADHYVYKCKLVNIGAEG 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   +E +    T+   +V      IK+++ ++M+QKS E+G      V  + +      
Sbjct: 61  IMVSLEERIDVDTELPQNVTICSGLIKSDKYEWMLQKSTELGASEFIAVGMKRSVVKITE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   L +P I    TL  +LK+      I+ A E       
Sbjct: 121 NKIAKKLERWQKIIKEAAEQSYRLAIPTIQYQATLNDVLKSTKTYDYILIAYEDAAKSGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           + +  ++         V I+ GPEGG   +E   L  + +   + LGPRILR++TA +  
Sbjct: 181 VSQFKSLVQQFKPNDKVLIIFGPEGGLDEDEVSLLQDVGYQ--IGLGPRILRAETAPLYV 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSALSFE 245


>gi|229594326|ref|YP_001499059.2| 16S ribosomal RNA methyltransferase RsmE [Rickettsia massiliae
           MTU5]
          Length = 243

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + + D  HY+  VLR+K  D + LFNG DGE+L++I+ 
Sbjct: 1   MKYN----RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIND 56

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK+ +  +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR  Q 
Sbjct: 57  IGKNNLSVRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRRCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    +NS+ 
Sbjct: 117 RSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEDNSIL 174

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           ++ +     ++ I++GPEGG+ ++E E L S      +SLG  ILR++TAA+ A  +VQ 
Sbjct: 175 RISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGRNILRAETAAITA--IVQV 232

Query: 240 IC 241
             
Sbjct: 233 RL 234


>gi|255972384|ref|ZP_05422970.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975487|ref|ZP_05426073.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256619449|ref|ZP_05476295.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256762904|ref|ZP_05503484.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256853489|ref|ZP_05558859.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256959288|ref|ZP_05563459.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257079354|ref|ZP_05573715.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257082206|ref|ZP_05576567.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257090256|ref|ZP_05584617.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257422237|ref|ZP_05599227.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294779744|ref|ZP_06745131.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1]
 gi|300860530|ref|ZP_07106617.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD
           Ef11]
 gi|255963402|gb|EET95878.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968359|gb|EET98981.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256598976|gb|EEU18152.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684155|gb|EEU23850.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256711948|gb|EEU26986.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256949784|gb|EEU66416.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256987384|gb|EEU74686.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256990236|gb|EEU77538.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256999068|gb|EEU85588.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257164061|gb|EEU94021.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294453118|gb|EFG21533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis PC1.1]
 gi|295113239|emb|CBL31876.1| RNA methyltransferase, RsmE family [Enterococcus sp. 7L76]
 gi|300849569|gb|EFK77319.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TUSoD
           Ef11]
 gi|323481110|gb|ADX80549.1| RNA methyltransferase family protein [Enterococcus faecalis 62]
 gi|327535490|gb|AEA94324.1| RsmE family RNA methyltransferase [Enterococcus faecalis OG1RF]
          Length = 250

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K   K + + YH++  V+RM   D   L        L++I  +  +  
Sbjct: 1   MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  ++  +   +    +V       K ++L++++QK  E+G            V+    +
Sbjct: 61  YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++     AAEQ      P +      + ++  +D    ++ A E    +   
Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +         + +L GPEGG+  +E E            LGPRILR++TA +  +
Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SAVSY 244


>gi|115350589|ref|YP_772428.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia ambifaria
           AMMD]
 gi|115280577|gb|ABI86094.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia ambifaria AMMD]
          Length = 255

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L R FV+  L          +   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AALPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDTLALFDGSGGQYRARLVEIDKR 66

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                              V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  NALAQIEAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAPVRGFGAWLDTLPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 S---IPFASLPDAPPAAAVTLLIGPEGGLSPDEENVARAHGF-TALSLGPRVLRTET 239


>gi|160872460|ref|ZP_02062592.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159121259|gb|EDP46597.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 241

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 119/246 (48%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKS 64
            L R++    L        S +  H+L  VLR++ GD  ++FNG+ GE+ + I   +  +
Sbjct: 2   RLTRIYQAHALNTGQIISLSQEAAHHLIRVLRLQVGDECIIFNGQAGEFQATIIERIKTT 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            R K+ E+ + ++     +  + + + ++++DY++QK+VE+G+  + P++T ++      
Sbjct: 62  ARVKLGEFNAINRESPLQITLVQAILHSDKMDYLLQKAVELGVTHVIPLLTAHSTLKLTP 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                     +     A EQ     +P +  P T +  +       +I+           
Sbjct: 122 DRWEKRYVHWQGVMRGACEQSGRTRIPILENPMTFDVAMMALKAETRIILQPAAKKM--- 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              LH++     V + IGPEGG+   E ++   + F   + +GPR+LRS+TA V AM+L+
Sbjct: 179 ---LHSLPFCQRVVLCIGPEGGWSLNELDSAQKMGF-QAMKMGPRVLRSETAGVVAMSLL 234

Query: 238 QAICGD 243
           Q + GD
Sbjct: 235 QGLYGD 240


>gi|264680843|ref|YP_003280753.1| hypothetical protein CtCNB1_4711 [Comamonas testosteroni CNB-2]
 gi|262211359|gb|ACY35457.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 246

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 16/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60
           + R     PL I  +         +   VLR + GD I LF G+       GE+ + I++
Sbjct: 1   MPRYHCPIPLHIGNELDLPAGAARH-VQVLRHQPGDVITLFEGQTGNGFTGGEFQATITH 59

Query: 61  VGKS-IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           +G+S +  +V+  S ++ + +  V  +       R+D++++K+ E+G+ +I+PV+   + 
Sbjct: 60  MGRSDVGVRVDSHSPAEREAARAVHLVVGMPANERMDWLVEKATELGVASIQPVMAARSV 119

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                      ++R ++  +SA EQC    +P I+ P  L   L++ D            
Sbjct: 120 LKLKGDRADKKIERWQSIAVSACEQCGRNQVPVIHAPLPLADWLRSKDAPATDATRLVLS 179

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             E +     A      V +L GPEGG  ++E++      +  P SLG R+LR++TA+VA
Sbjct: 180 LREGNQPLRTAAGDAQAVWVLHGPEGGLTAQEEDLALEQGW-KPASLGSRVLRAETASVA 238

Query: 233 AMALV 237
           A++L+
Sbjct: 239 ALSLL 243


>gi|227552631|ref|ZP_03982680.1| protein of hypothetical function DUF558 [Enterococcus faecium
           TX1330]
 gi|257888142|ref|ZP_05667795.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896967|ref|ZP_05676620.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378677|ref|ZP_06624836.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1]
 gi|227178257|gb|EEI59229.1| protein of hypothetical function DUF558 [Enterococcus faecium
           TX1330]
 gi|257824196|gb|EEV51128.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833532|gb|EEV59953.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|292642717|gb|EFF60868.1| RNA methyltransferase, RsmE family [Enterococcus faecium PC4.1]
          Length = 254

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K      G+ YH++  V+RM+  D + L        +++I+ + +   
Sbjct: 1   MQRYFLKESYEPKDHFILKGETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
           +  +++ +   +   S +       K  +LD++IQKS E+G  A         V+    +
Sbjct: 61  YLKEIKKEENQKELPSSITIASGYPKGEKLDWVIQKSTELGAQAFIGFPASASVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                  R+      AAEQ     +P +    T   L +  D    ++ A E    +   
Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEK 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L        +  + GPEGG   EE +       +    LGPRILR++TA +  +
Sbjct: 181 SNVAKILSETKPGSRILAVFGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYQW 246


>gi|300925058|ref|ZP_07140976.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1]
 gi|300418804|gb|EFK02115.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 182-1]
          Length = 210

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLD 95
           M  G  + LF+G +  + ++I+   K  +  KV E Q   +     +       +  +++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQLDDRESPLHIHLGQVMSRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKS+E+G+  I P+ +         +  +  + + +   I+A EQC    +P I P 
Sbjct: 61  FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPA 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             LE      D   ++        S N+L        +  V +LIGPEGG  ++E     
Sbjct: 121 MDLEAWCAEQDEGLKLNLHPRASNSINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|227888501|ref|ZP_04006306.1| protein of hypothetical function DUF558 [Escherichia coli 83972]
 gi|300900237|ref|ZP_07118421.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1]
 gi|300928111|ref|ZP_07143656.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1]
 gi|300954208|ref|ZP_07166673.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1]
 gi|300980098|ref|ZP_07174841.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1]
 gi|301049259|ref|ZP_07196232.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1]
 gi|301643701|ref|ZP_07243740.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1]
 gi|227834770|gb|EEJ45236.1| protein of hypothetical function DUF558 [Escherichia coli 83972]
 gi|300298955|gb|EFJ55340.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 185-1]
 gi|300318792|gb|EFJ68576.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 175-1]
 gi|300356253|gb|EFJ72123.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 198-1]
 gi|300409355|gb|EFJ92893.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 45-1]
 gi|300463877|gb|EFK27370.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 187-1]
 gi|301077903|gb|EFK92709.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 146-1]
 gi|315289506|gb|EFU48901.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 110-3]
 gi|315293940|gb|EFU53292.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 153-1]
 gi|324011803|gb|EGB81022.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 60-1]
          Length = 210

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLD 95
           M  G  + LF+G +  + ++I+   K  +  KV E Q   +     +       +  +++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKS+E+G+  I P+ +         +  +  + + +   I+A EQC    +P I P 
Sbjct: 61  FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPA 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             LE      D   ++        S N+L        +  V +LIGPEGG  ++E     
Sbjct: 121 MDLEAWCAEQDEGLKLNLHPRASNSINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|221640498|ref|YP_002526760.1| 16S ribosomal RNA methyltransferase RsmE [Rhodobacter sphaeroides
           KD131]
 gi|221161279|gb|ACM02259.1| Hypothetical Protein RSKD131_2399 [Rhodobacter sphaeroides KD131]
          Length = 224

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 14/223 (6%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           +R+  G  + LFNG+DGEW ++++  GK         Q+       D+  +F+PIK  R 
Sbjct: 1   MRLARGAAVSLFNGRDGEWRAEVAETGKRGGTLLCTDQTAPLRLPPDLWLLFAPIKKART 60

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           D++++K+ EMG   I PV TR+T +     DR++ + + AAEQC    +P +    +LE 
Sbjct: 61  DFIVEKAAEMGAARILPVQTRFTNSERIRQDRLQAHAVEAAEQCGGTFVPEVADLASLER 120

Query: 155 LLKNWDHNCQIVFADETCGSENS-------------LEKLHAIAHIPNVAILIGPEGGYH 201
           LL +W    +I++ DE+     +              E+          AILIGPEGG+ 
Sbjct: 121 LLADWPAERRIMWCDESLVGARAGLLEAAGGFEARGFEEGPKRPSPGPWAILIGPEGGFS 180

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            EE+  L  +  V P+SLGPRILR+DTAAVAA+ L Q++ GDW
Sbjct: 181 EEEQARLRRMEQVVPVSLGPRILRADTAAVAALTLWQSVLGDW 223


>gi|29376497|ref|NP_815651.1| hypothetical protein EF1975 [Enterococcus faecalis V583]
 gi|227519317|ref|ZP_03949366.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX0104]
 gi|256964753|ref|ZP_05568924.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257419655|ref|ZP_05596649.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|29343961|gb|AAO81721.1| conserved hypothetical protein TIGR00046 [Enterococcus faecalis
           V583]
 gi|227073246|gb|EEI11209.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX0104]
 gi|256955249|gb|EEU71881.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257161483|gb|EEU91443.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 250

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K   K + + YH++  V+RM   D   L        L++I  +  +  
Sbjct: 1   MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  ++  +   +    +V       K ++L++++QK  E+G            V+    +
Sbjct: 61  YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++     AAEQ      P +      + ++  +D    ++ A E    +   
Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEK 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +         + +L GPEGG+  +E E            LGPRILR++TA +  +
Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239

Query: 235 ALVQA 239
           ++V  
Sbjct: 240 SVVSY 244


>gi|221213199|ref|ZP_03586174.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD1]
 gi|221166651|gb|EED99122.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD1]
          Length = 255

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   +          V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  SALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L +      D   +++ +   
Sbjct: 127 GERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDSLPPAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 S---IPFASLPDAPPAAPVTLLIGPEGGLSPDEEAAARARGF-TALSLGPRVLRTET 239


>gi|89891576|ref|ZP_01203080.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
 gi|89516123|gb|EAS18786.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
          Length = 234

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 8/235 (3%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++ LF +  L    T      ++  ++  VLR   GD I + +G+   +   I+++    
Sbjct: 1   MQ-LFYNSQLDTHSTSFTLDREESKHVFKVLRKNIGDIINITDGRGNLYHGTINHITSNR 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               + +     T    +    +P K  +R+++ ++K+ EMG+  I P+++++++    N
Sbjct: 60  CDLDIAFAEAYPTHDYYLHIAIAPTKMNDRMEWFLEKATEMGISRITPILSQHSERQKIN 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           +DR     +SA +Q      P +   T  E  +   + + + +   E  G +N L+ L  
Sbjct: 120 LDRFNRIIVSAMKQSLQFHKPELDALTNFEDFINAKNVSDKFIAHCED-GDKNHLKNL-- 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           I    +  +LIGPEG +  +E E      F  P+SLG   LR++TA V   A + 
Sbjct: 177 IHKGNSTTVLIGPEGDFTPQEIEMALKNDF-KPVSLGSTRLRTETAGVYTAATLN 230


>gi|323490055|ref|ZP_08095276.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis
           MPA1U2]
 gi|323396351|gb|EGA89176.1| 16S ribosomal RNA methyltransferase RsmE [Planococcus donghaensis
           MPA1U2]
          Length = 245

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  +        +GD   ++A V+R   GDN++    ++  + ++I      + 
Sbjct: 1   MQRYFIEGKVPDNRIVAITGDDAKHIAKVMRQTVGDNLIAVI-EEQAYDAEILSTDFDVE 59

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            K+             V       K ++LD + QK+ E+GM A+ P     +        
Sbjct: 60  IKIGNKIETLVELPKKVTIACGLPKGDKLDLITQKATELGMYALLPFSAERSIVKWDNAK 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-- 177
           +   + R++     AAEQ     +P ++   + + L+   +    ++ A E    +    
Sbjct: 120 SDKKIGRLQKIAKEAAEQSHRTHIPEVHNIHSFKQLISKAEAYDVVIVAYEEEARQGDRT 179

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              E + ++    +V ++ GPEGG    E + L +   +   SLGPRILR++TA + A++
Sbjct: 180 RFAEIIKSLYDKDSVLLVFGPEGGISDAEVQALKNFGAIFT-SLGPRILRTETAPLYALS 238

Query: 236 LVQAIC 241
            +    
Sbjct: 239 AISYEF 244


>gi|86130519|ref|ZP_01049119.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85819194|gb|EAQ40353.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 233

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 9/231 (3%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++ LF    L I+ T      D+  ++  VLR + GD I L NG    + +++       
Sbjct: 1   MQ-LFYSKSLDIESTSYTLPKDESKHVIRVLRKQPGDTIYLTNGNGYLFTAQVYDANPNK 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
            +  +   +  + +   +    +P K  +R ++ ++K+ E+G+  I P++  +++     
Sbjct: 60  CKLSITSHTYQEPRDYKLHLAVAPTKLNDRFEWFLEKATEIGVTEITPLLCDHSERKVIK 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R      SA +Q     LP + P T  +  + N   N  I   ++   S         
Sbjct: 120 EERFLKILQSAMKQSLHYHLPKLNPLTPFKDFITNAHSNTFIAHCEDDTKS----LLKSE 175

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           ++   +  ILIGPEG + + E +       +TP+SLG   LR++TAA+ A 
Sbjct: 176 LSPATDCTILIGPEGDFSTTEIQQALQKN-ITPVSLGHSRLRTETAAIVAC 225


>gi|53802677|ref|YP_112559.1| hypothetical protein MCA0018 [Methylococcus capsulatus str. Bath]
 gi|53756438|gb|AAU90729.1| conserved hypothetical protein TIGR00046 [Methylococcus capsulatus
           str. Bath]
          Length = 243

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 15/246 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + RL++  PL         G++ HYL  VLR+K G ++ +FNG+ GE+ ++I    +  
Sbjct: 2   RISRLYLPVPLASGADVVLDGERAHYLRTVLRLKRGFDLTVFNGEGGEFAARIGVCHREA 61

Query: 66  RFKVEYQSRSQTKQSD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                   R   ++S   V+      +  R+D  IQK+VE+G+GAI P+ T         
Sbjct: 62  VSLTVGAHRPDDRESRLDVRLGLGISRGERMDLAIQKAVELGVGAITPLFTERCVVQLDG 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++  R    +A EQ     +P +  P +LE  L       +I            
Sbjct: 122 ERKAQRLEHWRRVVWAACEQSGRNRVPEVLEPRSLEAWLPEA-AGLRICLDPHAVHGLRE 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        + +V +L GPEGG+   E++   +  FV P+ LGPR+LR++TAA+AA+A +
Sbjct: 181 LA-----PPVGSVTLLSGPEGGFSDAERDMAVAAAFV-PIRLGPRVLRTETAALAALAAI 234

Query: 238 QAICGD 243
           Q + GD
Sbjct: 235 QTLWGD 240


>gi|305666561|ref|YP_003862848.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170]
 gi|88708830|gb|EAR01065.1| hypothetical protein FB2170_09846 [Maribacter sp. HTCC2170]
          Length = 235

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 6/236 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +        +Q   S ++ +++  VLR KE D +L+ NGK   + +KI     K  
Sbjct: 1   MQLFYNPRLDNSASQFVFSPEESNHIIKVLRKKEDDILLITNGKGYMFEAKIILANAKKC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           + ++   ++   K      + +P K  +R ++ ++K+ E+G+  I P+I   ++      
Sbjct: 61  KAQITSTTKKHRKMYWFHLVVAPTKSNDRFEWFLEKATEIGVDEITPIICDNSERKIIKP 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R+     SA +Q     LP + P  + +  + N       +     C  E  LE    +
Sbjct: 121 ERMEKVLQSAMKQSLQAYLPKLNPAVSYKEFMGNSREGLLFIAH---CDEEEKLELKRRV 177

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           A   +V +LIGPEG +  +E E+ +   ++ P+SLG   LR++TAA+ A   V  I
Sbjct: 178 APDKDVTVLIGPEGDFSRKEIESAYENGYL-PVSLGRNRLRTETAAIVACTTVNLI 232


>gi|146296762|ref|YP_001180533.1| hypothetical protein Csac_1755 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410338|gb|ABP67342.1| protein of unknown function DUF558 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 242

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   F++    +      +  D  +++  VLR +EG+ + L +G   ++ +KI  + K  
Sbjct: 1   MPIFFIESKNIVNDIAYITDKDDLNHVVKVLRKREGEVLNLCDGI-YDYKAKILEISKDK 59

Query: 65  IRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E +  +Q   Q DV      IK  ++D +IQK+ E+G+  + PVI++      ++
Sbjct: 60  IKVAIEEKVLNQREPQKDVFLFQCIIKNQKMDIIIQKATELGVKVLIPVISKRVVIDISE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +     A +QC     P I  P  +  +    D    ++   E    EN  
Sbjct: 120 KEEKKIQRWQRIAKEAQKQCLRPYSPQIQRPIEIGRVKDFLDELDLLIIPYE---KENKK 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L   ++I  V ILIGPEGG+  +E E    L  V  +SLG RILRS+TAA++ +++V 
Sbjct: 177 TYLDINSNINRVGILIGPEGGFEEDEIEIFKDLQKVRIVSLGKRILRSETAAISVISIVM 236

Query: 239 AICG 242
            + G
Sbjct: 237 HLLG 240


>gi|110832950|ref|YP_691810.1| hypothetical protein ABO_0090 [Alcanivorax borkumensis SK2]
 gi|110646061|emb|CAL15537.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 240

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R F D    +    +      H++  VLRM   D +++FNG+ GEWL++IS + K    
Sbjct: 3   RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAINKKAVC 62

Query: 68  KVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
                   + + + +    +   IK  R+DY IQK+ E+G  A+  + T         + 
Sbjct: 63  IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +   ISA EQC +  +P ++   +L   L +     +++        E S  
Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHP----GEKSFS 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              A+     +A+L GPEGG+ ++E +      F +P +LG R+LR++TA VA +A + A
Sbjct: 179 A-AALQGQTELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALWA 236

Query: 240 ICG 242
             G
Sbjct: 237 WHG 239


>gi|161525920|ref|YP_001580932.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans
           ATCC 17616]
 gi|189349361|ref|YP_001944989.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia multivorans
           ATCC 17616]
 gi|160343349|gb|ABX16435.1| protein of unknown function DUF558 [Burkholderia multivorans ATCC
           17616]
 gi|189333383|dbj|BAG42453.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 254

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 17/236 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   +          V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  SALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK----NWDHNCQIVFADETC 172
            +     +   R    ++ EQC    +P +         L       D   +++ +    
Sbjct: 127 GERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLPPPADGELRLLLSPRAS 186

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                   L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 ---IPFASLPDAPPAAPVTLLIGPEGGLSPDEEAAARARGF-TALSLGPRVLRTET 238


>gi|257087179|ref|ZP_05581540.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256995209|gb|EEU82511.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 250

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K   K + + YH++  V+RM   D   L        L++I  +  +  
Sbjct: 1   MQRYFMKEDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  ++  +   +    +V       K ++L++++QK  E+G            V+    +
Sbjct: 61  YFKEISKEEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++     AAEQ      P +      + ++  +D    ++ A E    +   
Sbjct: 121 KRAAKEKRLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEK 180

Query: 179 EKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +L  +         + +L GPEGG+  +E E            LGPRILR++TA +  +
Sbjct: 181 SQLAQVLSTCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLL 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SAVSY 244


>gi|10945822|gb|AAG24651.1| unknown [Alcanivorax borkumensis]
          Length = 240

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R F D    +    +      H++  VLRM   D +++FNG+ GEWL++IS + K    
Sbjct: 3   RRFFDDQNFHVGQLVELGASASHHIGKVLRMAVADELVVFNGRGGEWLARISAISKKAVC 62

Query: 68  KVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
                   + + + +    +   IK  R+DY IQK+ E+G  A+  + T         + 
Sbjct: 63  IEPLTFTDEDRCAPLAVTVALPMIKGERMDYAIQKATELGATALVILDTERCEVRLKGER 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   +   ISA EQC +  +P ++   +L   L +     +++        E S  
Sbjct: 123 QEKKLGHWQQVAISACEQCGLNRVPVVHGVLSLRDWLTSDLPALKLIAHP----GEKSFS 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              A+     +A+L GPEGG+ ++E +      F +P +LG R+LR++TA VA +A + A
Sbjct: 179 A-AALQGQTELALLTGPEGGFSNDELQQAADAGF-SPFALGNRVLRAETAPVALLAALWA 236

Query: 240 ICG 242
             G
Sbjct: 237 WHG 239


>gi|300815584|ref|ZP_07095808.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1]
 gi|300906490|ref|ZP_07124185.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1]
 gi|300401733|gb|EFJ85271.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 84-1]
 gi|300531513|gb|EFK52575.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 107-1]
 gi|324017218|gb|EGB86437.1| 16S rRNA methyltransferase RsmE [Escherichia coli MS 117-3]
          Length = 210

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95
           M  G  + LF+G +  + ++I+   K        + +   ++S +      +  +  +++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKS+E+G+  I P+ +         +  +  + + +   I+A EQC    +P I P 
Sbjct: 61  FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPA 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             LE      D   ++        S N+L        +  V +LIGPEGG  ++E     
Sbjct: 121 MDLEAWCAEQDEGLKLNLHPRASNSINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|238026201|ref|YP_002910432.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia glumae BGR1]
 gi|237875395|gb|ACR27728.1| Hypothetical protein bglu_1g05320 [Burkholderia glumae BGR1]
          Length = 253

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 17/236 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S + R FVD PL   ++     +   +   VLR++ GD + LF+G  G++ +++  +GK 
Sbjct: 6   SAIPRFFVDRPLQADSEVMLPAEVARH-VQVLRLEPGDPLTLFDGTGGQYRAELVELGKR 64

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                 V + +R       V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 65  NAVARTVGFDARELETPYRVTLAQGIAGGDKMDWLIEKAVELGVTALAPLSTARGVVRLS 124

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETC 172
            +     +   +    +A EQC    +P + P   L   L       D   +++ +    
Sbjct: 125 GERADKRVAHWQGVVRAACEQCGRNRVPAVAPIAELSAWLDALPPAADAELRLMLSPRAS 184

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +   L A A    V +LIGPEGG    E++      F   + LG R+LR++T
Sbjct: 185 ---IAFAALPATAPAGTVTLLIGPEGGLSPAEEDAARKHGFQAIV-LGARVLRTET 236


>gi|268609141|ref|ZP_06142868.1| hypothetical protein RflaF_06546 [Ruminococcus flavefaciens FD-1]
          Length = 240

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 14/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F +     +     +G   +++   LRMK+G+ I +      ++   I+ +     
Sbjct: 1   MPRFFTNE--INEDNIVLTGSDANHIGRSLRMKKGEEITVC-CNGIDYNCTIASITADSV 57

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +   VE    +     +V    +  K ++L+Y+IQKSVE+G+  I PV+TR        +
Sbjct: 58  YLDLVEKHPCAAEPDINVTLFQAVPKLDKLEYIIQKSVELGVSRIVPVLTRRCISRPDEK 117

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +    + R+      AA+Q     +P + P  + +  L   +   + +   E  G  +  
Sbjct: 118 DFAKKLPRLNKIAAEAAKQSGRGMIPEVTPVVSFKQSLAMMEELDRNILLYEEQGGRSFG 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E       + +  I+IG EGG+  EE E + +   V  + LG RILR +TA + A++++ 
Sbjct: 178 EV--DFEGVKSAGIIIGSEGGFDQEEAEAMVNSGAVR-VWLGKRILRCETAPITALSILM 234

Query: 239 AIC 241
            + 
Sbjct: 235 FLT 237


>gi|253574632|ref|ZP_04851972.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845678|gb|EES73686.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 267

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 15/250 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD       +   +G+   ++  V+R K GD +++ +G   E L++I+ +     
Sbjct: 14  MQRYFVDPAQFGDREVTIAGEDARHIGRVMRSKPGDKLIVSDGISREVLAEITIIEPQQV 73

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
               +E  + S      V    S  K ++++ +IQK  E+G  +  P ++        ++
Sbjct: 74  TAAIIEELAASGEPWFQVTVAQSLPKGDKMETVIQKCTEIGAASFLPFLSERTIVQYDSK 133

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +     AAEQ     +P +  P   + LL    +   +    E        
Sbjct: 134 KEEKRLTRWQKIAKEAAEQAHRSKIPAVELPVKWDKLLVELKNYDLVCLCYEKEDGRQLR 193

Query: 179 EKLHAI------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + L              VA+++GPEGG+    +           + LG RILR++TAA+A
Sbjct: 194 DVLKPFVTGLTPERTVKVAVVVGPEGGFTEA-EVEEAEAAGAVSVGLGRRILRTETAAMA 252

Query: 233 AMALVQAICG 242
           A+  +    G
Sbjct: 253 ALTCIMYESG 262


>gi|58002818|gb|AAW61712.1| Hypothetical protein GOX1976 [Gluconobacter oxydans 621H]
          Length = 254

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 2   KIHSHL----KRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW 54
           +    +     RL+V                  Q HYL +V+R   G  + +FN +DGEW
Sbjct: 9   RYRKRMNRSDPRLYVPASETAFVEGQTIPLPSGQAHYLGNVMRQGVGSAVRVFNERDGEW 68

Query: 55  LSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113
            ++I+ + K      +    R+      V+ +F+P+K +  + +I+   E+G+   RPV+
Sbjct: 69  AAEIASLKKDKGSVLLHRCERTPAPTDGVELLFAPLKRDATELVIRMGTELGVTRFRPVV 128

Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
           T  T     N++R+      AAEQC+ L +P I PP +L  +L  W  +  +  A E   
Sbjct: 129 TERTNTHRLNLERLSLIATEAAEQCERLDIPEILPPESLRVVLAGWPDDRPLFAALERRP 188

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            E+        A +   A+LIGPEGG+   E E L     V  LSLGP +LR++TA  A 
Sbjct: 189 GED--------AGVQAAALLIGPEGGFSEAEVELLRRHAAVHALSLGPLVLRAETAVCAG 240

Query: 234 MALVQAICGD 243
           ++ + A   D
Sbjct: 241 LSRLAARAED 250


>gi|257899573|ref|ZP_05679226.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257837485|gb|EEV62559.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 254

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K      G+ YH++  V+RM+  D + L        +++I+ + +   
Sbjct: 1   MQRYFLKESYEPKDHFILKGETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
           +  +++ +   +   S +       K  +LD++IQKS E+G  A         V+    +
Sbjct: 61  YLKEIKKEENQKELPSSITIASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                  R+      AAEQ     +P +    T   L +  D    ++ A E    +   
Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKRDLFERLDDYDMVLVAYEESAKQGEK 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L        +  + GPEGG   EE +       +    LGPRILR++TA +  +
Sbjct: 181 SNVAKILSETKPGSRILAVFGPEGGLSHEEIDYFVEHKGIL-CGLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYQW 246


>gi|188521803|gb|ACD59748.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 227

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVE-YQSRSQTKQS 80
               +  ++L  VLR+++GD  +LFNG   ++ ++I+  GK   R  VE  +  S     
Sbjct: 2   ALPEESANHLLRVLRLRQGDACILFNGDGSDYHARITVAGKRDARALVERVEPLSNESPL 61

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISA 134
            +  +    +  ++D ++QK+ E+G+ AI PVI   T+       T   +   R+  +SA
Sbjct: 62  RITLMQGIARGEKMDLILQKTTELGVAAIVPVIAERTEVKLDAARTEKRVAHWRSVVVSA 121

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            EQ     LP +  P  L+   +  D H  ++    +      +L    A +   ++ + 
Sbjct: 122 CEQSGRARLPSVATPLGLQDAAQASDTHALRLTLDPQGEHRLGTL----ASSIPQHIVVA 177

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+   ++ TL    F + L LGPRILR++TA +AA+A +Q+  GD
Sbjct: 178 IGPEGGWSPRDRATLAEAGF-SGLQLGPRILRTETAGLAAIAALQSRFGD 226


>gi|254180624|ref|ZP_04887222.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655]
 gi|184211163|gb|EDU08206.1| RNA methyltransferase, RsmE family [Burkholderia pseudomallei 1655]
          Length = 255

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I      +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIALVRGFDAWLDALPATPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L A     +V +LIGPEGG   +E++   +  F   LSLGPR+LR++T
Sbjct: 187 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARGFA-ALSLGPRVLRTET 239


>gi|169832194|ref|YP_001718176.1| hypothetical protein Daud_2054 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169639038|gb|ACA60544.1| protein of unknown function DUF558 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 249

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 10/247 (4%)

Query: 6   HLKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            + R+FV         +   +GD   +L  VLR+  G  +LL +G    + ++I  V + 
Sbjct: 2   RIPRVFVPPGRWRGREEAWITGDDARHLTRVLRLAAGSELLLLDGSGRAYAAEIREVDRD 61

Query: 65  IRFKVEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
               V            ++     S  K +R++ ++QK+ E+G+ AI PVI+  T     
Sbjct: 62  GVRAVITGPAELPADPGLRVTLVPSLAKGDRMEDLVQKATEVGVAAIVPVISERTVVRLT 121

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     ++R R     AAEQC    +P ++     E  LK         F  E      
Sbjct: 122 PEKAGRRVERWRRIATEAAEQCRRPLVPDVHGVCRFEDALKRLPAGGAAFFLWEEERGTG 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L + A +  V +  GPEGG+  EE     +   V+ +SLGPR+LR+DTA V A+AL
Sbjct: 182 LKQALRSRAPVREVFLFTGPEGGFTPEEAAAATARGAVS-VSLGPRLLRTDTAGVVAVAL 240

Query: 237 VQAICGD 243
           V    GD
Sbjct: 241 VLYEWGD 247


>gi|293556305|ref|ZP_06674890.1| protein YqeU [Enterococcus faecium E1039]
 gi|291601564|gb|EFF31831.1| protein YqeU [Enterococcus faecium E1039]
          Length = 254

 Score =  230 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K      G+ YH++  V+RM+  D + L        +++I+ + +   
Sbjct: 1   MQRYFLKESYESKDHFVLEGENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
           +  +++ +   +   S +       K  +LD+++QKS E+G  A         V+    +
Sbjct: 61  YLKEIKKEENQKELPSSITIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                  R+      AAEQ     +P +    T + L +  D    ++ A E    +   
Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEK 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+ + L        +  + GPEGG   +E +       +    LGPRILR++TA +  +
Sbjct: 181 SNAAKILSETKPDSRILAVFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYQW 246


>gi|330686119|gb|EGG97740.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU121]
          Length = 250

 Score =  230 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKS 64
           ++R F++       +   +  +  H++ +V+R  EG  I++       +  KI +   + 
Sbjct: 1   MQRYFINQNADESQRFFITNKEDIHHIKNVMRHSEGQLIVITFNDQNVYTCKIIHLADQE 60

Query: 65  IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  + +E Q         +      IK ++ ++MIQK+ E+G      V  + +      
Sbjct: 61  VEVELIEKQDIDTELPQHITICSGLIKADKYEWMIQKATELGASGFIAVEMQRSIVKLNH 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   LT+P I   +  + +    +    ++ A E       
Sbjct: 121 TKVSKKLERWQKIIKEAAEQSYRLTIPHISYLSNSKSICDIINQYDYVLVAYEEEAKHGE 180

Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +      L        V ++ GPEGG   EE   L S      + LGPRILR++TA +  
Sbjct: 181 ISHFKHMLKQFKPQDRVLLIFGPEGGLSDEEVSMLKSHS--QLVGLGPRILRAETAPLYT 238

Query: 234 MALVQAI 240
           +  +   
Sbjct: 239 LGALSYE 245


>gi|254246356|ref|ZP_04939677.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184]
 gi|124871132|gb|EAY62848.1| hypothetical protein BCPG_01097 [Burkholderia cenocepacia PC184]
          Length = 267

 Score =  230 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           + + R FVD  L          D   +   VLR++ GD + LF+G  G++ +++  V K 
Sbjct: 20  AAVPRFFVDAALRADAPLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 78

Query: 64  SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           S   +V+  +         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 79  SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 138

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L        D   +++ +   
Sbjct: 139 GERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLSPRA 198

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 199 S---SPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 251


>gi|149372812|ref|ZP_01891833.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49]
 gi|149354509|gb|EDM43074.1| hypothetical protein SCB49_12654 [unidentified eubacterium SCB49]
          Length = 236

 Score =  230 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 6/234 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +    L   T+     D+  ++  VLR KEGD + + NG+   + ++I     KS    
Sbjct: 4   FYQQGILPTATEIVFDKDESRHIHKVLRKKEGDQLHITNGEGYLFTTEILSSNPKSCIAT 63

Query: 69  VEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V   S  Q     +    +P K  +R ++ ++K+ E+G+  I P+I  +++      +R 
Sbjct: 64  VTETSLEQPLPYQLHMAVAPTKLNDRFEWFLEKATEIGITEITPIICDHSERKVIKKERY 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAH 186
               +SA +Q     LP +    T    +K + D N + +   E   ++ +L+  + I  
Sbjct: 124 EKIIVSAMKQSLSCYLPKLNDAITFTAFMKLSHDENFKSIAHCENEPTKKALK--NCIKP 181

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             +  +LIGPEG +  +E +      F T +SLG R LR++TAA+ A      +
Sbjct: 182 NFDSLLLIGPEGDFSKKEIKQAKDKDF-TEVSLGDRRLRTETAAIVACHTFSVL 234


>gi|289550652|ref|YP_003471556.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180184|gb|ADC87429.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           lugdunensis HKU09-01]
          Length = 250

 Score =  230 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 21/250 (8%)

Query: 7   LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F++       +      +  H++ +V+R   GD+I++       +  +I+ +    
Sbjct: 1   MQRYFINENADDGQRFFIRDKNDRHHIINVMRNCVGDHIIITFQNQSVFECEITDINDEY 60

Query: 66  -----RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVIT 114
                + K++  +        V      IK ++ ++M+QK+ E+G            V+ 
Sbjct: 61  IQIMPKVKLDIHT---ELPLYVTICSGLIKADKYEWMLQKATELGANEFWAVDMARSVVK 117

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
                    +DR +     AAEQ   LT+P +   + L+ +     H   I+ A E    
Sbjct: 118 LNQTKAMKKIDRWQKIVKEAAEQSYRLTIPSVKYMSNLKSVYDKISHYDYILIAYEEQAK 177

Query: 175 ENS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +N      + L        V ++ GPEGG    E E          + LGPRILR++TA 
Sbjct: 178 QNERSHFRQLLQCFKPNDRVLMIFGPEGGLTESEIEMFKDNS--HTVGLGPRILRAETAP 235

Query: 231 VAAMALVQAI 240
           + A++ +   
Sbjct: 236 LYALSAMSYE 245


>gi|260062552|ref|YP_003195632.1| 16S ribosomal RNA methyltransferase RsmE [Robiginitalea biformata
           HTCC2501]
 gi|88784119|gb|EAR15289.1| hypothetical protein RB2501_13214 [Robiginitalea biformata
           HTCC2501]
          Length = 235

 Score =  230 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 6/236 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +   +         Q   + ++  ++  VLR K GD + + NGK   ++++I     +  
Sbjct: 1   MNYFYHPLLDTSVNQFSFTPEESRHIVKVLRKKAGDQLHITNGKGYLFVAEILEANPERC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+    +   K   +    +P K  +R ++ ++K+ E+G+  I PVI + ++     M
Sbjct: 61  MGKLLETRKFHPKMYSLHVAVAPTKKTDRFEWFLEKATEIGIDRITPVICQRSERRKLPM 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R++     A +Q     LP +  P  L   L+      + +     C  +  ++    +
Sbjct: 121 ERMQRVVQEAMKQSLRTYLPELEEPVALREFLEREQPVLKFIAH---CEEDEKMDLKRRV 177

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           A   +V ILIGPEG +  +E +      F+ P+SLG   LR++TAA+ A   V  I
Sbjct: 178 AADKDVIILIGPEGDFTHDEIQMACEKGFI-PVSLGEYRLRTETAALVACTTVNLI 232


>gi|292571762|gb|ADE29677.1| hypothetical protein rpr22_CDS160 [Rickettsia prowazekii Rp22]
          Length = 236

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 139/241 (57%), Gaps = 8/241 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + + D  HY+  VLR+K  D++ +FNG DGE+L++I+ 
Sbjct: 1   MKYN----RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQ 56

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK+ +   ++ Q +    +S +    + IK+++L   I  + ++G+  I P+ITR  Q 
Sbjct: 57  IGKNNLSVVLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + L  P I    TL+  LK   +N  I++A+E    ++S+ 
Sbjct: 117 RTVNIERLMKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEHEKVKHSIL 174

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            + ++    ++AI+IGPEGG+ ++E E L        +SLG  ILR++TAA++ ++ V+ 
Sbjct: 175 HISSLLS-KDIAIIIGPEGGFTNDELELLALYNNTQSISLGSNILRTETAAISLISQVRL 233

Query: 240 I 240
           +
Sbjct: 234 L 234


>gi|229260084|ref|YP_001118455.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia
           vietnamiensis G4]
          Length = 255

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD ++LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  NALAQLDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPEVAAVRGFGAWLDALPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 S---IPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 239


>gi|229597239|ref|YP_001763902.2| 16S ribosomal RNA methyltransferase RsmE [Burkholderia cenocepacia
           MC0-3]
          Length = 255

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           + + R FVD  L          D   +   VLR++ GD + LF+G  G++ +++  V K 
Sbjct: 8   AAVPRFFVDAALRADAPLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 66

Query: 64  SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           S   +V+  +         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 187 S---SPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 239


>gi|126663640|ref|ZP_01734636.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38]
 gi|126624223|gb|EAZ94915.1| hypothetical protein FBBAL38_11239 [Flavobacteria bacterium BAL38]
          Length = 234

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 7   LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++ LF +  +           ++  ++  VLR KEGD I + NG    + S+I     K 
Sbjct: 1   MQ-LFYNSEIKQGDSTYFFDKEESKHIVKVLRKKEGDTIFITNGLGFLFESEIILASEKK 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              K+  ++  +          +P K  +RL++ ++K+ E+G+  I P+I  +++   Y 
Sbjct: 60  CEVKIAKETFQEPVAFYTHIAVAPTKMNDRLEWFLEKATEIGIDEITPIICDHSERKVYK 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLH 182
           +DR      +A +Q     LP I  PT+L   +K N++    I   +ET          +
Sbjct: 120 IDRAEKIIQAAMKQSLHYYLPKINEPTSLSQFVKLNFEGQKFIAHCEETDKK----SFKN 175

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            I H   + ILIGPEG + ++E     +  F+ P++LG   LR++TAA+ A   +
Sbjct: 176 EIKHNEKITILIGPEGDFSTKEINLAIANQFI-PVTLGNTRLRTETAALVACHTI 229


>gi|169815197|gb|ACA89780.1| protein of unknown function DUF558 [Burkholderia cenocepacia MC0-3]
          Length = 262

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           + + R FVD  L          D   +   VLR++ GD + LF+G  G++ +++  V K 
Sbjct: 15  AAVPRFFVDAALRADAPLALPADVARH-VQVLRLQPGDVLALFDGTGGQYRARLVEVDKR 73

Query: 64  SIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           S   +V+  +         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  SALVQVDTFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L        D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPDVAAVAGFNAWLDALPAAPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 S---SPFASLPDAPPAATVTLLIGPEGGLSPDEEHAARARGF-TALSLGPRVLRTET 246


>gi|160915014|ref|ZP_02077227.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991]
 gi|158432813|gb|EDP11102.1| hypothetical protein EUBDOL_01021 [Eubacterium dolichum DSM 3991]
          Length = 266

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 11/244 (4%)

Query: 1   MKIHSH---LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57
           M        +++ F      I      + +Q H+++HVLRM+E D + + + ++  + + 
Sbjct: 10  MMYDYRGDFMQQYFYSKRAQINDYIVLNDEQAHHVSHVLRMRENDVVRIVDKENTMFFAH 69

Query: 58  ISYVGKSIRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
           + + GK +   ++ +    T+    +  +   IK  + DY++QKS E+G+  I P  +  
Sbjct: 70  LLFEGKKVIAHLDQKIEDHTRNAVRITLLQGMIKKEKWDYVLQKSAELGVDCIVPFTSSR 129

Query: 117 T------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE 170
           T      +     + R     + A EQC   TL  +  P  L+   +       I + D 
Sbjct: 130 TVVKAKEERMDKKLLRWNKILLEACEQCKRSTLVDLKEPCLLKDAARYKSELNIIAYEDA 189

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
              SE     L     I +V I IG EGG+  EE   L  + +   +SLG RILR++TAA
Sbjct: 190 DATSEKLHRLLAKYPKISSVTIAIGSEGGFSKEEVSMLMEMGY-HRVSLGARILRAETAA 248

Query: 231 VAAM 234
           +AA+
Sbjct: 249 LAAI 252


>gi|56750741|ref|YP_171442.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus
           PCC 6301]
 gi|81299617|ref|YP_399825.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus elongatus
           PCC 7942]
 gi|56685700|dbj|BAD78922.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168498|gb|ABB56838.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 243

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 6/240 (2%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +   L+RL++        +   + DQ HYL  VLR+K GD   + +G+ G W +++    
Sbjct: 1   MARELRRLWLPPEQLQGDRWSLTADQRHYLQRVLRLKPGDRCAVIDGQGGLWTAELG--D 58

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120
           +   F V         Q  +  I S  K    D +I+++ E+G+  I+PVI+  +Q    
Sbjct: 59  RDQLFPVGAVPVLPPAQPRLTLIQSLPKQG-FDEVIRQATELGVTTIQPVISDRSQVRPE 117

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               DR R   I A+EQ + L LP + P       +     +             N L  
Sbjct: 118 AQKTDRWRKIAIEASEQSERLYLPQLEPIRLWSEAIAQIPADSLRCICLARRSLPNLLPW 177

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A     ++AI IGPEGG+   E E   ++ + TP+SLG  ILR+ TA + A++L QA+
Sbjct: 178 LQAQPAWTDLAIAIGPEGGWSDAEIEQAIAVGW-TPVSLGSSILRAVTAPIVALSLAQAV 236


>gi|221202461|ref|ZP_03575492.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2M]
 gi|221208082|ref|ZP_03581087.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2]
 gi|221171985|gb|EEE04427.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2]
 gi|221177634|gb|EEE10050.1| conserved hypothetical protein TIGR00046 [Burkholderia multivorans
           CGD2M]
          Length = 255

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDPLALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   +          V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALAQIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L        D   +++ +   
Sbjct: 127 GERAEKRVAHWRGVVRASCEQCGRNRVPDVAAVRAFAAWLDGLAPAPVDGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   EE+    +  F T LSLGPR+LR++T
Sbjct: 187 S---IPFASLPDAPPAAPVTLLIGPEGGLSPEEEAAARARGF-TALSLGPRVLRTET 239


>gi|134137877|gb|ABO53620.1| 16S rRNA m(3)U-1498 methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 262

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FV+  L          D   + A VLR++ GD ++LF+G  G++ +++  + K 
Sbjct: 15  AAVPRFFVEATLRAGATLALPADVARH-AQVLRLEPGDALVLFDGSGGQYRAQLVEIDKR 73

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 74  NALAQLDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLTTARGVVKLS 133

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P +         L        D   +++ +   
Sbjct: 134 GERADKRVAHWRGVVRASCEQCGRNRVPEVAAVRGFGAWLDALPAAPADGELRLLLSPRA 193

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    L        V +LIGPEGG   +E+    +  F T LSLGPR+LR++T
Sbjct: 194 S---IPFASLPDQPPAATVTLLIGPEGGLSPDEENAARAHGF-TALSLGPRVLRTET 246


>gi|324994345|gb|EGC26259.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK678]
          Length = 250

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+        +     D   ++  V+R+K GD ++L      + L+++    +   
Sbjct: 1   MQQYFIKGNPQSPLEVT-DKDTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNT 120
             VE  + +      V       K ++L+++ QK+ E+G  AI        V     +  
Sbjct: 60  EIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADRSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               +++      AAEQ     +P I         L       +I+ A E    E     
Sbjct: 120 AKKSEKLEKIAQGAAEQSKRNLIPEIRLFDKKADFLAALADFDRIIVAYEESAKEGETAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +  L  +     V  + GPEGG   +E         V+   LGPRILR++TA + A+  
Sbjct: 180 LVRALSGLEAGAKVLFIFGPEGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALTA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSVLL 243


>gi|229557995|ref|YP_192368.2| 16S ribosomal RNA methyltransferase RsmE [Gluconobacter oxydans
           621H]
          Length = 250

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 2   KIHSHLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
           +++    RL+V                  Q HYL +V+R   G  + +FN +DGEW ++I
Sbjct: 9   RMNRSDPRLYVPASETAFVEGQTIPLPSGQAHYLGNVMRQGVGSAVRVFNERDGEWAAEI 68

Query: 59  SYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
           + + K      +    R+      V+ +F+P+K +  + +I+   E+G+   RPV+T  T
Sbjct: 69  ASLKKDKGSVLLHRCERTPAPTDGVELLFAPLKRDATELVIRMGTELGVTRFRPVVTERT 128

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                N++R+      AAEQC+ L +P I PP +L  +L  W  +  +  A E    E+ 
Sbjct: 129 NTHRLNLERLSLIATEAAEQCERLDIPEILPPESLRVVLAGWPDDRPLFAALERRPGED- 187

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  A +   A+LIGPEGG+   E E L     V  LSLGP +LR++TA  A ++ +
Sbjct: 188 -------AGVQAAALLIGPEGGFSEAEVELLRRHAAVHALSLGPLVLRAETAVCAGLSRL 240

Query: 238 QAICGD 243
            A   D
Sbjct: 241 AARAED 246


>gi|309775549|ref|ZP_07670549.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916643|gb|EFP62383.1| RNA methyltransferase, RsmE family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 254

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+           + +Q H++  V+RM++GD I + +      L+++ +    ++
Sbjct: 8   MQQYFVNTLAQPGETIAMTSEQAHHIRRVMRMQQGDVIRVADNSGQIMLAEVEFQKDGVQ 67

Query: 67  FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             +  +    +K S ++      IK  + DY++QKS E+G   I P ++           
Sbjct: 68  AHILKELCDHSKTSVELVLAQGMIKGEKWDYLLQKSAELGAAEIIPFVSSRCVVKIKDDK 127

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG-SENSL 178
           T     R       A EQC   TL  +  P      LK    + +++  ++    SE   
Sbjct: 128 TEKKTARWNKILCEACEQCKRSTLVQLKEPCAFSD-LKEIPADLRLIAYEDADQCSERLC 186

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + L A   I  V +++G EGG+ +EE   L S  F   +SLG RILR++TAA++ +
Sbjct: 187 DVLRAHPSIRRVLMVVGSEGGFSAEEVAELVSCGF-HRVSLGGRILRAETAALSLL 241


>gi|291519248|emb|CBK74469.1| RNA methyltransferase, RsmE family [Butyrivibrio fibrisolvens 16/4]
          Length = 243

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65
           ++++FV+    I  +   +G   H+L  V+R++ G+ I +       ++ ++S  + K +
Sbjct: 1   MQQVFVNE-QPIDGKFNITGQDAHHLTKVVRLRPGEKIRVSVSDGSNYICEVSDYIEKDL 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              V  +  S    + +    +  K +R++ +I+K VE+G   I PV  +        + 
Sbjct: 60  VATVVEEVPSTELPNKIYLFQAIPKGDRMETIIEKCVELGAYEIIPVEMKNCIVKLDDKK 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-GSENSL 178
               ++R ++   SAAEQ     +P I+   + +   +       I+   E+  G +++ 
Sbjct: 120 KKSKVERYQSIAKSAAEQSKRSIIPGIHSVMSFKEAFEYAKALDVILLPFESKNGMKDTY 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L  +    ++ + IGPEGG+   E E +     V  +SLG RILR+DTAA+ +++++ 
Sbjct: 180 DCLAGLKKGQSIGVFIGPEGGFAPNEIEMVEDS--VQLISLGHRILRTDTAAICSLSMLM 237

Query: 239 AICGDW 244
             C ++
Sbjct: 238 LKCEEF 243


>gi|293571365|ref|ZP_06682396.1| protein YqeU [Enterococcus faecium E980]
 gi|291608581|gb|EFF37872.1| protein YqeU [Enterococcus faecium E980]
          Length = 254

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K      G+ YH++  V+RM+  D + L        +++I+ + +   
Sbjct: 1   MQRYFLKESYEPKDNFILKGETYHHIVRVMRMEPKDEVFLAFNDQIAVVAEITKITEDAV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
           +  +++ +   +   S +       K  +LD++IQKS E+G  A         V+    +
Sbjct: 61  YLKEIKKEENQKELPSSITIASGYPKGEKLDWIIQKSTELGAQAFLGFPASASVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                  R+      AAEQ     +P +    T   L +  D    ++ A E    +   
Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKRDLFERLDDYDVVLVAYEESAKQGEK 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N  + L        +  + GPEGG   EE         +    LGPRILR++TA +  +
Sbjct: 181 SNVAKILSETKPGSRILAVFGPEGGLSHEEINYFVEHKGIL-CGLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYQW 246


>gi|300310746|ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1]
 gi|300073531|gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R  +   L I +         H++ HVLR++ GD I LFNG+ GE+ + +S V K   
Sbjct: 1   MPRFHLPQALGIGSDLVLPEQIAHHI-HVLRLQPGDAITLFNGEGGEYTATLSAVEKKRA 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 +  R       +    +  +  ++D++++K+VE+G  A++P+  +        +
Sbjct: 60  HAQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                    +    +AAEQC    LP +   T  +  +   D + +I+ +         L
Sbjct: 120 RAEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPR---GAEPL 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                      V +++GPEGG+  EE+E   +      LS+G R+LR++T
Sbjct: 177 SGWARHHPPQAVTLVVGPEGGFSDEEEELACAQG-ALMLSMGSRVLRTET 225


>gi|154251112|ref|YP_001411936.1| hypothetical protein Plav_0656 [Parvibaculum lavamentivorans DS-1]
 gi|154155062|gb|ABS62279.1| protein of unknown function DUF558 [Parvibaculum lavamentivorans
           DS-1]
          Length = 264

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 8/225 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           RL+++ PL    +     DQ HYL +VLRM EG  +LLFNG+DGEW ++I+    K+   
Sbjct: 21  RLYIEEPLNAGARLTLERDQSHYLVNVLRMGEGAAVLLFNGRDGEWAARIAEAHKKNCVL 80

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++  Q+R Q    D+  +F+P+K  RLD++ QK+ EMG   I+PVIT  T  T    +R+
Sbjct: 81  ELTAQTRVQEPLPDIWLLFAPVKKARLDFIAQKATEMGAAVIQPVITERTVVTRLKDERL 140

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLHAI 184
           +   + AAEQC ++ +P +     L  LL  W+      +I+F DE+     + E L  +
Sbjct: 141 QANAVEAAEQCGLVAVPEVREAEKLGSLLARWEEAAPGRRILFCDESEEPGAAREALARL 200

Query: 185 A----HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           A        +AILIGPEGG+  +E++ L        LSLGPRI+R
Sbjct: 201 AEEGWRGAPLAILIGPEGGFSPKERDMLRGRKDTAVLSLGPRIMR 245


>gi|302391394|ref|YP_003827214.1| hypothetical protein Acear_0607 [Acetohalobium arabaticum DSM 5501]
 gi|302203471|gb|ADL12149.1| protein of unknown function DUF558 [Acetohalobium arabaticum DSM
           5501]
          Length = 248

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 9/245 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   FV+     + Q + +GD   ++   LR+  GD I + +GK   ++ +I+  G  + 
Sbjct: 1   MHHFFVEPDYITEGQVRITGDDVKHITKSLRLGPGDEISVADGKGRRYMVEIAETGNGLV 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
                +        + +V  +    K+ ++D +++K  E+G+  + P  T+ +       
Sbjct: 61  LGNIKEEFRSKVEPEVEVTLLQGLPKSRKMDLIVEKCTELGIDKVIPAETKRSVVKLKPS 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R +    +AA+Q     +P +     L  L +       I+   E   + +  
Sbjct: 121 KAKRRRKRWQRKAEAAAKQSKRARIPAVGQLMNLTDLSEIATDYDLILLPWEEESTSSVK 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E L + A I  V I+IGPEGG+ +EE ET   L     +SLGPRILR++TA +  ++LV 
Sbjct: 181 EVLGSAAAIEKVLIIIGPEGGFTAEEVETAKQLG-AKSVSLGPRILRTETAGLTTLSLVL 239

Query: 239 AICGD 243
              GD
Sbjct: 240 YELGD 244


>gi|81428349|ref|YP_395349.1| hypothetical protein LSA0735 [Lactobacillus sakei subsp. sakei 23K]
 gi|78609991|emb|CAI55039.1| Hypothetical protein LCA_0735 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 251

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 108/247 (43%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---K 63
           ++R F++  + +    + +G+  H++  V+RM+ GD I +   ++  +++++       K
Sbjct: 1   MQRYFIEETVTVGQSLQLTGETAHHMLKVMRMQVGDQIEIVTPEELAFITQLQSADATQK 60

Query: 64  SIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                VE           +   +    K ++ D+++QK  ++G        ++++     
Sbjct: 61  QATVTVESAVETDVELPIETTIVCGLSKGDKTDWIVQKGTQLGAHRFIFCNSQFSVARWD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     + R++     AAEQ     +P I    +L  + +       + + +     E+
Sbjct: 121 AKKQVKKLARLQKIAQEAAEQAHRTHVPVIEWRASLTAIAEESADIKLVAYEESAKAGEH 180

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              ++ L +     ++  + GPEGG   +E E L +  F+    LGPRILR++TA +  +
Sbjct: 181 GQLVQSLQSAQPGQSLICVFGPEGGIAPKEIEALQAAGFLLA-GLGPRILRAETAPLYLL 239

Query: 235 ALVQAIC 241
           + +  + 
Sbjct: 240 SAISYVT 246


>gi|289434752|ref|YP_003464624.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170996|emb|CBH27538.1| diacylglycerol kinase domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 255

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++R F+D  +  + +  + +G+ +H++  V+RMKEGD + +    +   ++KI  +  + 
Sbjct: 1   MQRYFIDKTIENELEPIRITGENFHHMTRVMRMKEGDQVFIVFPSNQTAIAKIISIAAEE 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +   V+      T+    +       K ++L+Y+IQKS E+G     P     +      
Sbjct: 61  VMLNVDKWLNEDTELPIQITIASGLPKGDKLEYIIQKSTELGAHEFIPYKAERSVVKWEE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR++     AAEQ     +P ++   +L+ LL        IV A E    E  
Sbjct: 121 KKVTKKIDRLQKIAQEAAEQSHRTIVPKVHFAASLKELLLTNKQFDYIVVAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V ++ GPEGG   +E   L  L  V    LGPRILR++TA +  
Sbjct: 181 DRMLASLFKETVPNQSVLVIFGPEGGISEKELHLLQELN-VKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFFF-DLY 250


>gi|325693858|gb|EGD35777.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK150]
          Length = 250

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPSQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK  E+G  AI        V     + 
Sbjct: 59  LEILEELADNTELPVQVIIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P I         L       +I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKEGEST 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +A    V  + GPEGG   +E         V+   LGPRILR++TA + A+ 
Sbjct: 179 VLVRALSGLAAGAKVLFIFGPEGGLSPDEIAAFRQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|326791224|ref|YP_004309045.1| ribosomal RNA small subunit methyltransferase E [Clostridium
           lentocellum DSM 5427]
 gi|326541988|gb|ADZ83847.1| Ribosomal RNA small subunit methyltransferase E [Clostridium
           lentocellum DSM 5427]
          Length = 246

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV+     + +    G   +++ +VLR+  G  IL+ N +  ++   I  +   + 
Sbjct: 1   MAKFFVNSEDVFENEIHIKGTDVNHIKNVLRLPVGKEILINNRQGKDYKCIIKLIDTDLV 60

Query: 67  FKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
                    +T +  VQ     S IK  +++++IQK++E+G+  I P+IT          
Sbjct: 61  TADIIGELEETTEPAVQTVLFQSLIKGEKMEFVIQKAIEIGVTVIIPIITERCIVKLESD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           + T    +R +    SAA+Q     +P +  P T +  L       ++            
Sbjct: 121 KKTKSKCERWQKIAESAAKQSKRGIVPEVLWPMTFKEALTYAKQQLEVSCIPFENEHAYH 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++         ++ I IGPEGG+  EE     +   ++P++LG RILRS+TA +  +A +
Sbjct: 181 IKTYLKNCKAKSIGIFIGPEGGFTDEEVLLASTFQ-ISPITLGKRILRSETAGLVTLANI 239

Query: 238 QAICG 242
               G
Sbjct: 240 MYEMG 244


>gi|320355424|ref|YP_004196763.1| hypothetical protein Despr_3346 [Desulfobulbus propionicus DSM
           2032]
 gi|320123926|gb|ADW19472.1| protein of unknown function DUF558 [Desulfobulbus propionicus DSM
           2032]
          Length = 260

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F           + SG +  ++A VLR+K G  + LF+G+     + +  VGK   
Sbjct: 1   MRRFFFPHHAHSGDLIELSGAEARHIASVLRLKPGQAVELFDGQGQVCAAVLQTVGKHQV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN---TH 121
                  R++     V    +   +K  ++D ++QK+ E+G  A  PV++ Y +N     
Sbjct: 61  TARVTAIRNERPAVSVPLTLAQCLLKGKKMDLLVQKATELGAQAFMPVVSAYCENHGDRD 120

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           +  +R +   I A +QC       I P   L+    ++      + A E  G   +    
Sbjct: 121 HQRERWQRIMIEACKQCHRSNPMAILPVARLDQ--ADFTPYDHRLAAWE--GERQAALPT 176

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             I H   + + +GPEGG H ++   L    F TP SLG  ILR +TAA+AA+++VQ + 
Sbjct: 177 RFIDHPGPLCLFLGPEGGLHDDDLRLLTQWSF-TPFSLGRHILRGETAALAALSIVQYLS 235

Query: 242 G 242
           G
Sbjct: 236 G 236


>gi|86748970|ref|YP_485466.1| 16S ribosomal RNA methyltransferase RsmE [Rhodopseudomonas
           palustris HaA2]
 gi|86571998|gb|ABD06555.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 251

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 3/230 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RLF+D  L    +   + DQ +YL +VLR+  G  +L FNG+DGEW + ++  
Sbjct: 3   RYEFRSPRLFLDAALVAGARVPLNRDQSNYLGNVLRLSSGAPVLAFNGRDGEWRAVLAGR 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            +    +V  Q+R Q +  D+ Y F+P+K  RLDYM QK+VEMG G ++PV+TR+TQ   
Sbjct: 63  KRPEELEVAEQTRPQDRLPDLTYAFAPLKHARLDYMAQKAVEMGAGRLQPVLTRHTQVHR 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEK 180
            N +R+R   I AAEQC IL+L  +  P  LE  L+   +    +VF DE     + +  
Sbjct: 123 LNTERMRANVIEAAEQCGILSLAGVEEPVALERWLETRAESGRLLVFCDEDAEVADPVAA 182

Query: 181 LHAIAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L          + +L+GPEGG+ ++E++ L   P +  L+LGPRI+R+DT
Sbjct: 183 LQGARPAAAQGIDLLVGPEGGFAADERDVLLRQPNILRLALGPRIMRADT 232


>gi|157825352|ref|YP_001493072.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia akari str.
           Hartford]
 gi|157799310|gb|ABV74564.1| hypothetical protein A1C_01170 [Rickettsia akari str. Hartford]
          Length = 254

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 137/245 (55%), Gaps = 11/245 (4%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +    R++++  L   ++ + + D  HY+  VLR+K  D + +FNG +GE+L+ I+ 
Sbjct: 1   MRFN----RIYINSRLAENSKIELASDHVHYVKTVLRLKVNDGLRIFNGTEGEFLAHITA 56

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK +I  +++ Q +    +S +    + IK ++L   I  + ++G+  I P+IT   Q 
Sbjct: 57  IGKHNISVRLKEQLKKPYTESALTLAVAIIKQDKLMLAINMATQLGITKIIPLITSRCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + L  P I    T++  LK   HN  +++A+E    ENS+ 
Sbjct: 117 RTVNIERLTKCVIEATEQSERLIPPIIEKAITIQDCLK--KHNNFMLYANEHEKEENSIL 174

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           ++ ++    N+AI+IGPEGG+ ++E E L S      +SLG  ILR++TA + A  +VQ 
Sbjct: 175 RISSLLD-NNIAIIIGPEGGFTNDELELLASYKNTKSVSLGSNILRAETAVITA--IVQV 231

Query: 240 -ICGD 243
            + G 
Sbjct: 232 KLLGR 236


>gi|259046670|ref|ZP_05737071.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259036835|gb|EEW38090.1| RsmE family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 249

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   +   T   + S +Q H L  V+RMK  +   + +      + ++  +    
Sbjct: 1   MQRYFVKGIVSETTHSLEFSKEQIHQLKKVMRMKVEEQFEVVDENSTLAIVELVCLEPFE 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119
              ++  ++               K ++LD+++QK+ E+G+  I P      V+      
Sbjct: 61  VRVIKTLNQKVELPVFTAIAVGLSKGDKLDWIVQKATELGVNEIIPIEMSRNVVKWNKDK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE---- 175
                +R++     A+EQ   L LPF+    T++ L++      Q + A E    E    
Sbjct: 121 ASKKTERLQKIAEEASEQSHRLKLPFVSEVMTIDSLIEYTKTYHQKLIAYEEAAKEGERV 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             ++ L A+     +  + GPEGG   +E   L    F T  SLGPRILR++TA + A++
Sbjct: 181 QLVKSLQALKEGEKIVFVFGPEGGIDEKEVAKLQMNEFHT-CSLGPRILRAETAPLYALS 239

Query: 236 LVQAIC 241
            +   C
Sbjct: 240 ALSYQC 245


>gi|69247931|ref|ZP_00604547.1| Conserved hypothetical protein 46 [Enterococcus faecium DO]
 gi|257880295|ref|ZP_05659948.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257882150|ref|ZP_05661803.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257890954|ref|ZP_05670607.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894209|ref|ZP_05673862.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614757|ref|ZP_05712527.1| hypothetical protein EfaeD_03512 [Enterococcus faecium DO]
 gi|260562402|ref|ZP_05832916.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261209224|ref|ZP_05923616.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566140|ref|ZP_06446575.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293560713|ref|ZP_06677192.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|293566148|ref|ZP_06678551.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|294614194|ref|ZP_06694114.1| protein YqeU [Enterococcus faecium E1636]
 gi|294618772|ref|ZP_06698299.1| protein YqeU [Enterococcus faecium E1679]
 gi|294622231|ref|ZP_06701291.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|314938567|ref|ZP_07845851.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04]
 gi|314940912|ref|ZP_07847818.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C]
 gi|314948067|ref|ZP_07851469.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082]
 gi|314952049|ref|ZP_07855072.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A]
 gi|314991930|ref|ZP_07857385.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B]
 gi|314995188|ref|ZP_07860302.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01]
 gi|68194633|gb|EAN09120.1| Conserved hypothetical protein 46 [Enterococcus faecium DO]
 gi|257814523|gb|EEV43281.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257817808|gb|EEV45136.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257827314|gb|EEV53940.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830588|gb|EEV57195.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073326|gb|EEW61667.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260076770|gb|EEW64505.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162085|gb|EFD09950.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291590074|gb|EFF21866.1| conserved hypothetical protein [Enterococcus faecium E1071]
 gi|291592970|gb|EFF24559.1| protein YqeU [Enterococcus faecium E1636]
 gi|291594960|gb|EFF26310.1| protein YqeU [Enterococcus faecium E1679]
 gi|291598273|gb|EFF29366.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|291605304|gb|EFF34759.1| conserved hypothetical protein [Enterococcus faecium E1162]
 gi|313590597|gb|EFR69442.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a01]
 gi|313593514|gb|EFR72359.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133B]
 gi|313595839|gb|EFR74684.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133A]
 gi|313600270|gb|EFR79113.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133C]
 gi|313642124|gb|EFS06704.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0133a04]
 gi|313645483|gb|EFS10063.1| RNA methyltransferase, RsmE family [Enterococcus faecium TX0082]
          Length = 254

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K      G+ YH++  V+RM+  D + L        +++I+ + +   
Sbjct: 1   MQRYFLKESYESKDYFVLEGENYHHIVRVMRMEPEDEVFLAFNDQIAIVAEITEITEEAV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
           +  +++ +   +   S +       K  +LD+++QKS E+G  A         V+    +
Sbjct: 61  YLKEIKKEENQKELPSSITIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                  R+      AAEQ     +P +    T + L +  D    ++ A E    +   
Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEK 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+ + L        +  + GPEGG   +E +       +    LGPRILR++TA +  +
Sbjct: 181 SNAAKILSETKPDSRILAVFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYQW 246


>gi|114763454|ref|ZP_01442861.1| hypothetical protein 1100011001336_R2601_17754 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543992|gb|EAU47003.1| hypothetical protein R2601_17754 [Roseovarius sp. HTCC2601]
          Length = 208

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 4/210 (1%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           +RM  G  ILLFNG DGEW ++I+  GK       + Q+R+Q    D+  +F+PIK  R 
Sbjct: 1   MRMATGGEILLFNGHDGEWRAEITEAGKKAGTAVCDTQTRAQAMPPDLWLLFAPIKKART 60

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           D++++K+VE+G+  I PV T++T +     DR++ + + AAEQC  L +P +     L+ 
Sbjct: 61  DFIVEKAVELGVRRILPVQTQFTNSERIRQDRLQAHALEAAEQCGALFVPEVAELVRLDR 120

Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
           LL +W     ++F DE      +     A A     A+LIGPEGG+   E+  L  +   
Sbjct: 121 LLADWPDERGLLFCDEAEAGSRAGALASAPAPS---AVLIGPEGGFSDAERTRLGRMEQT 177

Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             ++LGPRILR+DTAAVAA+ L Q+  GDW
Sbjct: 178 RVIALGPRILRADTAAVAALTLWQSQSGDW 207


>gi|21672668|ref|NP_660735.1| hypothetical protein BUsg395 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25009589|sp|Q8K9E4|RSME_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|21623305|gb|AAM67946.1| hypothetical 26.9 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 246

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +   + R+++ + L I      S    HY+  VLRMK+ D + +FN  +  + S+I  + 
Sbjct: 1   MKKRIPRIYIKYFLQINQVISLSKSYTHYIKKVLRMKKKDKLEIFNNTNYIFFSEILEIN 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
                 +  + + +  +S +      +  K  ++++ IQKSVE+G+  I P+ + Y    
Sbjct: 61  NHTIEIIILKKQIKNLESPLLIHLGQVISKNEKMNFSIQKSVELGVNTITPLFSEYCNFQ 120

Query: 121 H------YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCG 173
           +                IS+ EQC    +P I  P  +    K  +++  +IVF+     
Sbjct: 121 NKLICFPKKKIHWENIVISSCEQCHRNNIPEIKNPEYILPWCKRTYENETKIVFSPSATF 180

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           + N L +      I  V +LIG EGG+   E E +    F+ P+ LGPRILR++TA +AA
Sbjct: 181 TINELPE-----KINCVRLLIGSEGGFSFLEIEKIIQYGFI-PIKLGPRILRTETAVIAA 234

Query: 234 MALVQAICGD 243
           +  +Q   GD
Sbjct: 235 ITALQIKFGD 244


>gi|146302321|ref|YP_001196912.1| hypothetical protein Fjoh_4594 [Flavobacterium johnsoniae UW101]
 gi|146156739|gb|ABQ07593.1| protein of unknown function DUF558 [Flavobacterium johnsoniae
           UW101]
          Length = 235

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 108/231 (46%), Gaps = 8/231 (3%)

Query: 7   LKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           ++ LF +  +   T+      ++  ++  VLR K+ D + + NG+   + ++I+      
Sbjct: 1   MQ-LFYNPDIDETTESFSFDKEESKHIIKVLRKKDSDILHVTNGQGLLFETEITLASDNK 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               V    +S   +  +    +P K  +R ++ ++K+ E+G+  I P+I   ++    N
Sbjct: 60  CIVSVLSIKKSPEPKFRLHLAVAPTKMNDRFEWFLEKATEIGIQEITPIICDRSERKVIN 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R     +SA +Q + + LP +    + +  +K  +   Q +   E    ++  E L +
Sbjct: 120 LERFEKIVLSAMKQSNEMFLPKLNDAVSFKEFIKQKNQGLQFIAHCEETDKKSLKESLKS 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                NV +LIGPEG +  +E        +  P++LG   LR++TAAV A 
Sbjct: 180 ---NENVTLLIGPEGDFSEKEIALALENNY-KPVTLGNTRLRTETAAVVAC 226


>gi|319789344|ref|YP_004150977.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1]
 gi|317113846|gb|ADU96336.1| protein of unknown function DUF558 [Thermovibrio ammonificans HB-1]
          Length = 239

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 18/246 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R  VD      +     G +  +   VLR+K+GD I++F+G+  E+ + I      S+
Sbjct: 1   MRRFKVDS--IKGSVAYLRGQEARHALKVLRLKKGDEIIVFDGEGKEYSAVIEAASPTSV 58

Query: 66  RFK-VEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           + K VE  + ++    +         K  + +  +QK  E+G+  I PV+   +      
Sbjct: 59  KLKIVEEINVNRDSPLNSTLYMGLTNKLQKFELALQKVTELGVTRIVPVVCARSSTAQLV 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +N    M R +   ++AA+QC    LP +  P  L  +    D + + V  ++   S  +
Sbjct: 119 KNWSGKMRRWQEIVVNAAKQCGRSVLPELLEPVPLPEVED--DSDLKFVLWEKGGKSLKN 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +   A     +V++L+GPEGG    E E L S  F  P+ LG RILR++TAA+A + LV
Sbjct: 177 YQDYVA----SSVSLLVGPEGGLEKGEIELLESKGF-KPIYLGKRILRAETAAIAGVTLV 231

Query: 238 QAICGD 243
           Q I GD
Sbjct: 232 QFIWGD 237


>gi|227872816|ref|ZP_03991130.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268]
 gi|227841343|gb|EEJ51659.1| protein of hypothetical function DUF558 [Oribacterium sinus F0268]
          Length = 254

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 120/249 (48%), Gaps = 15/249 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           +   FV      + +    G+ +H+L  VLR + G+ IL+ +G+  ++  +I S+  +  
Sbjct: 1   MHHFFVSKEEIGEEKILLRGENFHHLHKVLRGQIGEKILISDGEGVDYQCEIQSFSEEEA 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
              + ++       + +  + +  K ++++++IQK+VE+G+ A+ P+ ++ T        
Sbjct: 61  VLSICFREEPHELPAKIILLQALPKGDKMEWIIQKAVELGISALIPLESKNTVMKLKEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178
               + R ++   SAA+Q     LP +      +       D + +++  +   G   + 
Sbjct: 121 EEKKISRWQSIMDSAAKQSKRSILPKMENGMGWKEAFSYVKDCDFKLLPYENERGVIPTR 180

Query: 179 EKLHAI------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E L  +          ++A+ IGPEGG+  EE E      F+ P+SLG RILR++TAA+ 
Sbjct: 181 EILAKMEAAVKGKKNCSIALCIGPEGGFTKEEVEQAMGEGFL-PISLGKRILRTETAAIT 239

Query: 233 AMALVQAIC 241
           A++L+    
Sbjct: 240 ALSLIMMQL 248


>gi|291543373|emb|CBL16482.1| RNA methyltransferase, RsmE family [Ruminococcus sp. 18P13]
          Length = 239

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 15/244 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F+        Q   +G+  H++   LRM+ G+ + +  G   ++  +I  + G  +
Sbjct: 1   MPRFFLPA--LDPVQPVITGEDAHHIGFSLRMRPGEQLTVCAG-GVDYDCRIREITGDCV 57

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             +V+ Q+    + +  +    +  KT++L+ ++QK+VE+G   I PV+TR   +     
Sbjct: 58  YLEVQGQAPCAAEPTVALTLYQALPKTDKLEQIVQKAVELGAARIVPVLTRRCISRPDPG 117

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R++    +AA+Q     +P +    T    L+        V   E  G   S+
Sbjct: 118 QFSKKQQRLQKIAHAAAKQAGRGIIPEVGGMLTFSQALEELGGQQLPVMLYEAGGV--SM 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +L  +    ++ +L+G EGG+  EE         + P+ LGPRILR +TA + A++L+ 
Sbjct: 176 SQL-TVPRTGSIGVLVGSEGGFDPEEAAQARLAG-IQPVWLGPRILRCETAPLTALSLLM 233

Query: 239 AICG 242
            + G
Sbjct: 234 YLSG 237


>gi|261313181|ref|ZP_05952378.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella
           pinnipedialis M163/99/10]
 gi|261302207|gb|EEY05704.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Brucella
           pinnipedialis M163/99/10]
          Length = 204

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 86/205 (41%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++RL+V+  L       A     HYL HVLRMKEGD +L+FNG+DGEW + +   G K +
Sbjct: 1   MQRLYVENELRAGVSFDAGAQAAHYLTHVLRMKEGDEVLVFNGRDGEWKASLQPEGRKRL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +   Q+R Q K S++ Y F+P+K  RLDYM+QK+VEMG G ++PVIT++TQ      +
Sbjct: 61  LLEPLEQTRPQPKPSELIYCFAPLKQGRLDYMVQKAVEMGAGVLQPVITQHTQVPRLGTE 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+R   I AAEQC +L+LP        +  L  WD + +++F DE   S++ L  L  + 
Sbjct: 121 RIRANAIEAAEQCGVLSLPDCREALRFDRFLDQWDTSRRLIFCDEGHESDDPLSILTGLE 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHS 210
             P+  +LIGPEGG+  EE++ LH 
Sbjct: 181 PGPS-GLLIGPEGGFSEEERQLLHR 204


>gi|121534804|ref|ZP_01666624.1| protein of unknown function DUF558 [Thermosinus carboxydivorans
           Nor1]
 gi|121306599|gb|EAX47521.1| protein of unknown function DUF558 [Thermosinus carboxydivorans
           Nor1]
          Length = 244

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 17/231 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++R F   PL   ++   +GD  H++A VLR+K GD I++         ++I  V G S+
Sbjct: 1   MRRFFFPGPLA--SEMIITGDDGHHIARVLRLKPGDYIIVAGQDGQACKAEIISVDGSSV 58

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           +    +  + S     +V       K +++D++IQK+VE+G+  I P+ T YT       
Sbjct: 59  KVACRQALTESNEPPVEVWLAQGLPKGDKMDFIIQKAVELGVTRILPIETAYTVVRYDAG 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD--ETCGSEN 176
                 +R +     AA+QC    +P +    T   LLK       I+  +    CG + 
Sbjct: 119 KKAARRERWQKIAYEAAKQCGRAAVPEVASVQTFSSLLKMTLPETVIMLYEGQPACGLKQ 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           +L     +    +  +LIGPEGG+  +E            +++GPRILR++
Sbjct: 179 ALR----MTPSESYLLLIGPEGGFSPDEVLLCRQRG-AQIVTMGPRILRTE 224


>gi|326335942|ref|ZP_08202119.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691906|gb|EGD33868.1| RsmE family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 268

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 101/235 (42%), Gaps = 6/235 (2%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
            ++  + +             ++  ++  VLR K GD + + +G+   +   I  +  K 
Sbjct: 25  EMQLFYHENLSPESNLILLDKEESTHIHRVLRRKIGDLLYITDGRGNLYEGVIQDINDKK 84

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               ++  + +      +    +P K   R ++ ++K+ E+G+  I P+I  +++     
Sbjct: 85  CSIVIQSCTLTPPLPYQLHLAVAPTKMNERYEWFLEKATEIGVHEITPIICEHSERKTVK 144

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-EKLH 182
           ++R     +SA +Q      P +  P  +   L N  H      A    G +  L +KL 
Sbjct: 145 IERFEKIILSAMKQSLQCFRPILNKPINMLNWLDNNIHEKNRFIAHCQEGKKELLFDKLS 204

Query: 183 A--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                +I ++ I+IGPEG +  +E +      F +P+ L    LR++TAA+ A +
Sbjct: 205 TSYHNNIRDILIIIGPEGDFSEKEIQKAIQKNF-SPVILSSNRLRTETAAIVACS 258


>gi|297617813|ref|YP_003702972.1| hypothetical protein Slip_1648 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145650|gb|ADI02407.1| protein of unknown function DUF558 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 253

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           L R FV             GD+  +L+ VLR+  GD +L+ +G   E L ++    K  I
Sbjct: 4   LHRFFVAHERIKDGYVIIEGDEAKHLSKVLRLGPGDEVLVCDGSGKELLVRLETAEKGLI 63

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           + +V  Q+  + +    V  +    K  ++D+++QK+VE+G+  I PV+T         +
Sbjct: 64  KGRVVNQNHPEREPGLTVGLVQGVGKGEKMDFIVQKAVELGISRIYPVMTDRGTVRLDGE 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
              + + R       A +QC    +P I   T L  ++        + F +       + 
Sbjct: 124 RAFHRVQRWEKIAKEACKQCGRTVVPEIKGITDLTVVMDECRDIPGLFFYEGEWKRPLKT 183

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L +   I     V + IG EGG+   E ET      +    LGPRILR++TAA+AA+  
Sbjct: 184 ILRENARILRDRGVILYIGAEGGFSLREAETARKRG-ILMAGLGPRILRTETAALAAITA 242

Query: 237 VQAICGD 243
           V    GD
Sbjct: 243 VMYELGD 249


>gi|312864025|ref|ZP_07724261.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis
           F0396]
 gi|322517605|ref|ZP_08070473.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|311100438|gb|EFQ58645.1| RNA methyltransferase, RsmE family [Streptococcus vestibularis
           F0396]
 gi|322123770|gb|EFX95348.1| RsmE family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 247

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+              D   ++ +V+R+ E D ++L      ++L++++     + 
Sbjct: 1   MQQYFIKG-QMENPVIIKDKDTVKHMFNVMRLAEDDQVVLVFEDGIKYLARVTDRENHVL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+ + QK+ E+G  AI        V+    +  
Sbjct: 60  EVIEVLNENVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWGFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P +         L   D+  +I  A E       L  
Sbjct: 120 AKKEDKLDKIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELAT 179

Query: 181 LHA----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E +       V  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELAHVESGQKILFIFGPEGGISPSEIDAFEEAGGVK-VGLGPRIMRTETAPLYALSS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|315658147|ref|ZP_07911019.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496476|gb|EFU84799.1| RsmE family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 253

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 21/251 (8%)

Query: 6   HLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L+R F++       +      +  H++ +V+R   GD+I++       +  +I+ +   
Sbjct: 3   KLQRYFINENADDGQRFFIRDKNDRHHIINVMRNCVGDHIIITFQNQSVFECEITDINDE 62

Query: 65  I-----RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVI 113
                 + K++  +        V      IK ++ ++M+QK+ E+G            V+
Sbjct: 63  YIQIMPKVKLDIHT---ELPLYVTICSGLIKADKYEWMLQKATELGANEFWAVDMARSVV 119

Query: 114 TRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
                     +DR +     AAEQ   LT+P +   + L+ +     H   I+ A E   
Sbjct: 120 KLNQTKAMKKIDRWQKIVKEAAEQSYRLTIPSVKYMSNLKAVYDKISHYDYILIAYEEQA 179

Query: 174 SENS----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            +N      + L       +V ++ GPEGG    E E          + LGPRILR++TA
Sbjct: 180 KQNERSHFRQLLQCFKPNDHVLMIFGPEGGLTESEIEMFKDNS--HTVGLGPRILRAETA 237

Query: 230 AVAAMALVQAI 240
            + A++ +   
Sbjct: 238 PLYALSAMSYE 248


>gi|148266299|ref|YP_001233005.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter uraniireducens
           Rf4]
 gi|146399799|gb|ABQ28432.1| protein of unknown function DUF558 [Geobacter uraniireducens Rf4]
          Length = 246

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R  +   +    +   SGD + ++A VLR+K G +++L +G   E    I+ VG KS+
Sbjct: 1   MRRFILADSIINDGKVTVSGDLFRHMAKVLRLKAGTSVILADGAGRECTGVITAVGAKSL 60

Query: 66  RFKVEYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             +VE    + T      +       K ++L++++QK  E+G+  I P     +      
Sbjct: 61  EIRVEEGPAAPTGDNGPRITLYQGMPKGDKLEFIVQKCTELGVAEIVPFTAARSIAKVTH 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q     ++R R     AA Q    T+P +     L  +L+   H+ +++  +E  G+   
Sbjct: 121 QRGMERIERWRRIATEAARQSKRRTVPQVTLAENLSEVLQAAQHSVKLLLWEEEQGNR-L 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  +    ++A+L+GPEGG  +EE     +  F+ PLSLG RI+R++TA +  ++++
Sbjct: 180 KETLSGLPIPESIAVLVGPEGGLTAEEAAAASACGFI-PLSLGKRIVRTETAGIIILSIL 238

Query: 238 QAICGD 243
           Q   GD
Sbjct: 239 QFYWGD 244


>gi|326566657|gb|EGE16798.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 12P80B1]
          Length = 241

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 19/248 (7%)

Query: 7   LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL    I           H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118
           KS   K++ Y   ++T            + +R+DY IQK+ EMG+  I  + +   Q   
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120

Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +   ++  ++A EQC +  +P I  P  L+  + N     ++V A     + 
Sbjct: 121 KYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +  KL       N+++LIG EGG    E +      FV P  +G R+LR++TA V A++
Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVVALS 233

Query: 236 LVQAICGD 243
            +  + G 
Sbjct: 234 AL-TLFGR 240


>gi|239637611|ref|ZP_04678583.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           warneri L37603]
 gi|239596829|gb|EEQ79354.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           warneri L37603]
          Length = 250

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F++       +   +  +  H++ +V+R  EG  I+        +  +I ++G   
Sbjct: 1   MQRYFINQNADESQRFFITNKEDIHHIKNVMRQCEGQQIVTTFNDQNVYTCEIIHIGDQE 60

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
                +E Q         +      IK ++ ++MIQK+ E+G          R ++   +
Sbjct: 61  IEIELIEKQDIDTELPQHITICSGLIKADKYEWMIQKATELGASEFIAVEMQRSIVKLNS 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   LT+P I   +  + +    +    ++ A E       
Sbjct: 121 TKASKKLERWQKIIKEAAEQSYRLTIPHISYLSNSKLICDIINQYDCVLVAYEEEAKHGE 180

Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +      L        V ++ GPEGG   EE   L   P    + LGPRILR++TA +  
Sbjct: 181 ISHFKHMLKQFKPQDRVLLIFGPEGGLSDEEVSMLK--PHSQLVGLGPRILRAETAPLYT 238

Query: 234 MALVQAI 240
           +  +   
Sbjct: 239 LGALSYE 245


>gi|269837717|ref|YP_003319945.1| hypothetical protein Sthe_1689 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786980|gb|ACZ39123.1| protein of unknown function DUF558 [Sphaerobacter thermophilus DSM
           20745]
          Length = 249

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 13/235 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67
           R ++  PL        + +Q    A VLR+  G  ++LFNG   E    I     + +  
Sbjct: 7   RFYLPAPLPPGESVALTEEQARQAARVLRLAPGAPVVLFNGDGQEVPGTIEDCAPRRVTV 66

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           ++ E ++        +    + IK +R D+++QK  E+G+  I P+ T  T      +  
Sbjct: 67  RLGEPRAGRSCPVPAIHVAQALIKADRFDWVVQKVTELGVARITPLATSRTVVSLPVERA 126

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +R +   + AAEQ   +T+P I  P TL+ LL        +V  +      + +  
Sbjct: 127 RQRRERWQRIAVEAAEQSGRVTIPEIDEPATLDDLLPLMARIPALVCWENEAMPLHRVR- 185

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              +     + ++IGPEGG+  EE          T +SLGP ILRS+TAA+AA+A
Sbjct: 186 ---LPTAGPLLVVIGPEGGFTREEIAAAVDAGART-VSLGPLILRSETAALAALA 236


>gi|223044376|ref|ZP_03614410.1| protein YqeU [Staphylococcus capitis SK14]
 gi|222442245|gb|EEE48356.1| protein YqeU [Staphylococcus capitis SK14]
          Length = 250

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           ++R F++       +      +  H++ +V+R  EGD++++       +  +I  +  + 
Sbjct: 1   MQRYFINQSADKLQRFFIENKEDIHHIKNVMRYSEGDSVIVTFLDQTVYKCQIKALNDNY 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
           +  +++ +    T+    +      IK ++ ++MIQK+ EMG          R V+    
Sbjct: 61  VELELKDKQNIDTELPQHITICSGLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   LT+P IY  + L+ +     H   ++ A E       
Sbjct: 121 SKVAKKLERWQKIIKEAAEQSYRLTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGD 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + +        V ++ GPEGG   +E          T + LGPRILR++TA + A
Sbjct: 181 LSHFKQIIKQFKTQDRVLMIFGPEGGLSDKEVSLFSENS--TLVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ V   
Sbjct: 239 LSAVSFE 245


>gi|126700066|ref|YP_001088963.1| hypothetical protein CD2449 [Clostridium difficile 630]
 gi|254976043|ref|ZP_05272515.1| hypothetical protein CdifQC_12049 [Clostridium difficile QCD-66c26]
 gi|255093431|ref|ZP_05322909.1| hypothetical protein CdifC_12334 [Clostridium difficile CIP 107932]
 gi|255101609|ref|ZP_05330586.1| hypothetical protein CdifQCD-6_12419 [Clostridium difficile
           QCD-63q42]
 gi|255307478|ref|ZP_05351649.1| hypothetical protein CdifA_12867 [Clostridium difficile ATCC 43255]
 gi|255315176|ref|ZP_05356759.1| hypothetical protein CdifQCD-7_12527 [Clostridium difficile
           QCD-76w55]
 gi|255517845|ref|ZP_05385521.1| hypothetical protein CdifQCD-_12086 [Clostridium difficile
           QCD-97b34]
 gi|255650961|ref|ZP_05397863.1| hypothetical protein CdifQCD_12291 [Clostridium difficile
           QCD-37x79]
 gi|260684030|ref|YP_003215315.1| hypothetical protein CD196_2295 [Clostridium difficile CD196]
 gi|260687690|ref|YP_003218824.1| hypothetical protein CDR20291_2342 [Clostridium difficile R20291]
 gi|115251503|emb|CAJ69336.1| putative methyltransferase [Clostridium difficile]
 gi|260210193|emb|CBA64400.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213707|emb|CBE05588.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 252

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 12/248 (4%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FV+              G+   +++ VLR K G+ + + +  + E++ +I  + KS
Sbjct: 1   MDRFFVEKNNINLQDKTCTIEGEDVKHISKVLRCKLGEKLEICDKNNNEYICEIMNIDKS 60

Query: 65  IR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           I     +E    ++  +  V+      K  +++ ++QK  E+G+  I  V T+ +     
Sbjct: 61  IVNLEILEKVDINRESELKVRLYQGLPKAPKMEMILQKLTEVGVEEIILVQTKRSVVKVD 120

Query: 123 NM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           +       +R       AA+Q     +P +    + +  L++   N   +   E   + +
Sbjct: 121 DKKEDKKFERWERIIYEAAKQSKRGKIPKLRGVLSFKEALEDMKKNNVNICPYENERTVS 180

Query: 177 SLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               L    ++I +V I IGPEGG+  EE E +        +SLGPRILR++TA+V A  
Sbjct: 181 IKHALKKCDSNIDSVGIFIGPEGGFSEEEIEQIQKNN-CNVVSLGPRILRTETASVVAST 239

Query: 236 LVQAICGD 243
           +      D
Sbjct: 240 IALYELSD 247


>gi|229822870|ref|ZP_04448940.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271]
 gi|229787683|gb|EEP23797.1| hypothetical protein GCWU000282_00160 [Catonella morbi ATCC 51271]
          Length = 255

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 18/252 (7%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKS 64
           ++R F+D   L ++       D   +   V+R + G    L  G    +L+++   V + 
Sbjct: 1   MQRYFIDQTGLLVQDLVSLKADDSRHFLRVMRSQPGAKAWLVTGDGQCYLAQLEGEVDRL 60

Query: 65  IRFKVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITR 115
            +F++        +     +V       K ++LDY++QK  E G    +P      V+  
Sbjct: 61  AQFRLLELQAEADRVELPVEVTIACGLSKNDKLDYIVQKGTECGASHFQPLALSRDVVKW 120

Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
            ++     +DR++     AAEQC  L +P +  P +L  LL         + A E    +
Sbjct: 121 DSKKAGQRLDRLQKIAKEAAEQCHRLRIPQVAQPLSLAQLLAQSADYDACLVAYEEDAKQ 180

Query: 176 NSLEKLHAI------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +L              V ++ G EGG   EE   L    F T ++LGPRILR++TA
Sbjct: 181 GEHSRLRQACQALKGQAGAKVLVVFGSEGGLAPEEVSQLCEAGFQT-VALGPRILRAETA 239

Query: 230 AVAAMALVQAIC 241
            +  ++ +    
Sbjct: 240 PIYFLSALSYAL 251


>gi|307243293|ref|ZP_07525460.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM
           17678]
 gi|306493311|gb|EFM65297.1| RNA methyltransferase, RsmE family [Peptostreptococcus stomatis DSM
           17678]
          Length = 258

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 19/255 (7%)

Query: 7   LKRLFVDF-PLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FV+   L +        G+   +++ VLR  +GD I + +    E+L +I  + K+
Sbjct: 1   MDRFFVEPGQLNLGDKTLYIEGEDVKHISKVLRYDQGDEIEVCDSNKHEYLCRIESIDKT 60

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                 VE    ++  +  V       K+ +++ ++QK  E G+  I  V TR +     
Sbjct: 61  RINLSIVEEIDINRESRVRVSLYQGLPKSTKMEIILQKLTEAGVDEIVLVNTRRSVVNIK 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                   DR       AA+QC    +P +    + E  L++   N   +   E   S  
Sbjct: 121 GDKADKKFDRWERIIYEAAKQCKRGLIPKLRGILSFEEALEDMGKNDINICPYEDEKSLG 180

Query: 177 SLEKLHAIAHIP--------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             E L                V I IGPEGG+  EE + +     +  +++GPRI R++T
Sbjct: 181 IKEALQTDLVKNIIDKKDEVRVGIFIGPEGGFTQEENDMVKEAG-IASVTMGPRIFRTET 239

Query: 229 AAVAAMALVQAICGD 243
           A++ A A+     GD
Sbjct: 240 ASIVATAITLYELGD 254


>gi|289209554|ref|YP_003461620.1| hypothetical protein TK90_2394 [Thioalkalivibrio sp. K90mix]
 gi|288945185|gb|ADC72884.1| protein of unknown function DUF558 [Thioalkalivibrio sp. K90mix]
          Length = 255

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 14/252 (5%)

Query: 1   MKIHSHLKRLFV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           M+      RL + D  L       AS D+ HY  +VLR+K      +F+G+  E+ +++ 
Sbjct: 1   MRC----PRLLINDTDLAAGQSIPASQDRLHYATNVLRLKNDAACRVFDGQGNEFHARLE 56

Query: 60  YVGK-SIRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
             G+ S  F +  ++ + T     ++ +    + + +D  +QK+VE+G+  IRPV+   +
Sbjct: 57  VTGRRSGTFHLGDRAAAPTTPARPIELLQGIARGDHMDLAVQKAVELGISVIRPVLCERS 116

Query: 118 QNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171
           ++                   +AAEQC    LP + PP TL+  L        +V  ++ 
Sbjct: 117 RSAAAHRGLDKRQAHWAGIIQAAAEQCGRNELPLLVPPATLDEALDASSPGLDLVADEQG 176

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                +L+          V ILIGPEGG   EE+    +  F   +++GPR LR++TAA+
Sbjct: 177 PPLSGALDSFGKGGTSGRVRILIGPEGGLTDEERIQARNAGF-QAVAMGPRTLRTETAAI 235

Query: 232 AAMALVQAICGD 243
           + + LVQ   GD
Sbjct: 236 SLLTLVQWRLGD 247


>gi|228476013|ref|ZP_04060721.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           hominis SK119]
 gi|228269836|gb|EEK11316.1| ribosomal RNA small subunit methyltransferase E [Staphylococcus
           hominis SK119]
          Length = 250

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           ++R F++       +   +  +  H++ +V+R   G+ I++       ++S+I+ +  + 
Sbjct: 1   MQRYFINQNADSHQRFFITNEEDIHHIKNVMRNTVGNKIIINFNDKKVFISEITNINSNQ 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +           DV      IK ++ ++++QKS E+G      V    +      
Sbjct: 61  IEVLPINQLDIDTELPVDVTICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +DR +     AAEQ   L +P +   + L+ +    ++   ++ A E       
Sbjct: 121 NKVQKKIDRWQKIVKEAAEQSYRLVIPDVKFQSNLKVIYDTINNYDYVLIAYEDEAKHGE 180

Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             +    L+       V I+ GPEGG+  +E +    +     + LGPRILR++TA + A
Sbjct: 181 KSRFKNILNNFQTNDRVLIIFGPEGGFSDKEIDLFREVS--LNVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISFE 245


>gi|310815076|ref|YP_003963040.1| hypothetical protein EIO_0578 [Ketogulonicigenium vulgare Y25]
 gi|308753811|gb|ADO41740.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 244

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 3/216 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLFVD PL        + DQ +YL +V+R++ G  + L NG+DGEW + +    K     
Sbjct: 6   RLFVDHPLGPGQTVPLNADQANYLFNVMRLQPGTVLSLINGRDGEWDASVVSAAKRHGTL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
               Q++      D+   F+PIK  R D++I+K+ E+G   + P+++ +T +    +DR+
Sbjct: 66  LASRQTKPLQLPPDLWLAFAPIKKTRTDFIIEKATELGTARMIPILSDHTNSERVRVDRL 125

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           + + I A EQC    LP +  P  L   L ++     + F DE    + S     A A  
Sbjct: 126 QAHVIEAVEQCGGTALPEVADPVALSAFLDHFPAGRTLWFCDEALVGQPS--GFPADATA 183

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
               ILIGPEGG+ + E++ L +LPF   ++LGPRI
Sbjct: 184 GPACILIGPEGGFSARERDRLRTLPFARSIALGPRI 219


>gi|314933750|ref|ZP_07841115.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87]
 gi|313653900|gb|EFS17657.1| RNA methyltransferase, RsmE family [Staphylococcus caprae C87]
          Length = 250

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           ++R F++       +      +  H++ +V+R  EGD++++       +  +I  +  + 
Sbjct: 1   MQRYFINQSADKLQRFFIENKEDIHHIKNVMRYSEGDSVIVTFLNQTVYKCQIKALNDNY 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
           +  +++ +   +T+    +      IK ++ ++MIQK+ EMG          R V+    
Sbjct: 61  VELELKDKQNIETELPQHITICSGLIKADKYEWMIQKATEMGANEFIAVGMDRSVVKLNE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +     AAEQ   LT+P IY  + L+ +     H   ++ A E       
Sbjct: 121 SKVAKKLERWQKIIKEAAEQSYRLTIPNIYFKSNLQEIYDIISHYDYVLIAYEEQAKHGD 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L    + +        V ++ GPEGG   +E          T + LGPRILR++TA + A
Sbjct: 181 LSHFKQIIKQFKTQDRVLMIFGPEGGLSDKEVSLFSENS--TLVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ V   
Sbjct: 239 LSAVSFE 245


>gi|241761515|ref|ZP_04759602.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753879|ref|YP_003226772.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373823|gb|EER63356.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553242|gb|ACV76188.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 256

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L RL+V+  L ++        Q HYL  V+R K G  ++LF+   GEWL ++   G K +
Sbjct: 12  LPRLYVEEKLSLEAVITPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           + K+ +    +    D+  + +PIK  R+D++ +K+ E+G+  I PVIT+ T     N++
Sbjct: 72  QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++ + + AAEQC   +L  +    +L+ LL  W  +  + FADET G E  +E L    
Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                AIL+GPEGG+  +E++ ++++    P+SLGPRILR
Sbjct: 191 MA--AAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILR 228


>gi|298290358|ref|YP_003692297.1| hypothetical protein Snov_0345 [Starkeya novella DSM 506]
 gi|296926869|gb|ADH87678.1| protein of unknown function DUF558 [Starkeya novella DSM 506]
          Length = 260

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 92/222 (41%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
              +RL+VD  L   T  +   D+ HY+A V+R++ G  + LFNG+DGEW +     G+ 
Sbjct: 15  FRAQRLYVDDDLGEGTLVRLDRDRAHYVADVIRLEVGGALHLFNGRDGEWRAVREPAGRR 74

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               + E + R Q + +D+ Y+F+P+K  RLDYM+QK+VEMG G + PV+TR TQ +  N
Sbjct: 75  EAVLRCEARLRRQAEPADLDYVFAPLKHARLDYMVQKAVEMGAGRLVPVMTRRTQASRVN 134

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R+R   I AAEQC IL+LP +  P+ L   L +     ++VF DE     + L +L  
Sbjct: 135 TERMRANVIEAAEQCGILSLPAVLEPSALARWLADLAPERRLVFCDEAAPEADPLAELRE 194

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
               P +A+LIGPEGG+  EE+  L + P    LSLGPRILR
Sbjct: 195 AVAGP-LAVLIGPEGGFDEEERRLLKARPGTIVLSLGPRILR 235


>gi|163857938|ref|YP_001632236.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella petrii DSM
           12804]
 gi|163261666|emb|CAP43968.1| conserved hypothetical protein [Bordetella petrii]
          Length = 243

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F D PL    +        H+   VLR++ G  I+LFNG  GE+ + +   GK   
Sbjct: 3   LPRFFCDTPLSPGVRLPLPTALAHHAVRVLRLRAGAAIVLFNGGGGEYPATLEIEGKDAW 62

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
            ++ ++  R       +  +      +++D++++K+VE+G   + P+  + +        
Sbjct: 63  ARLGDFDPRDAELAGRIVLVQGLPSGDKMDWVVEKAVELGASRVSPIAAQRSVLQLSGAR 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +        +A+EQC    L  +  P TL   L       +++   E    +   +
Sbjct: 123 LEKRVAHWARIAQAASEQCGRNRLMAVDAPATLRDWLDQPADGLRLLCHPEA--GQGLAD 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            L A   +  +++L+GPEGG+   E         V  +  GPR+LR++
Sbjct: 181 ALAAQPGLRQLSLLVGPEGGWSDAELALAAERG-VQAVRYGPRVLRTE 227


>gi|323137857|ref|ZP_08072932.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242]
 gi|322396860|gb|EFX99386.1| protein of unknown function DUF558 [Methylocystis sp. ATCC 49242]
          Length = 246

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           +RLFV+  L          +  +YL +VLR++EGD I+LFNG+DGE+ +++  V + S R
Sbjct: 9   QRLFVESALAPGADVLPPAEALNYLLNVLRLREGDPIVLFNGRDGEFRAELREVTRRSAR 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V  Q R QT ++D+ Y F+P+K  RLDYM QK+ EMG G + PV+TR TQ    N  R
Sbjct: 69  LAVGAQLRPQTPRADLDYCFAPLKQARLDYMAQKATEMGAGRLLPVVTRRTQVRRVNTSR 128

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   + AAEQC +L +P +     L   L  +     +VF DE     N +  L A   
Sbjct: 129 LRANAVEAAEQCGVLAVPEVGEAADLPEFLAGFPAGRLLVFCDEDAPIANPVAAL-AGRE 187

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              +++L+GPEGG+   E+E++  LP V  LSLGPR+LR
Sbjct: 188 GEGISLLVGPEGGFDDVERESIARLPNVVRLSLGPRVLR 226


>gi|224541750|ref|ZP_03682289.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525354|gb|EEF94459.1| hypothetical protein CATMIT_00922 [Catenibacterium mitsuokai DSM
           15897]
          Length = 244

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 9/245 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+           A    Y ++  V+RM++G++++  +      L +I  + + + 
Sbjct: 1   MQRYFIKNNYRQNDIIIADDSMYKHMTKVMRMEKGEHVICIDEDKHVCLCEIIDLKQGLL 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
              E    +     +V  ++   K+++ +++IQK+ E+G+  I P+    +         
Sbjct: 61  QIKEELQENNELDVEVTLVYGLPKSDKFEFVIQKATELGVTRIVPLRASRSIVKMDETRF 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           +   +R       A+EQC    +P I PP  L  L         + + +E+   E+    
Sbjct: 121 NKKKERFVRIAQEASEQCHRQIVPEITPPIQLSQLKDYLSEVNVVAYEEESKNGEHHAFT 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               A   ++ I++GPEGG+  +E E +  +  V P S+G RILRS+TA +  ++++   
Sbjct: 181 KALDALHTSITIIVGPEGGFDLQEVEKMQVMG-VVPCSIGNRILRSETAPLYMLSVIGYR 239

Query: 241 --CGD 243
              GD
Sbjct: 240 RELGD 244


>gi|295398031|ref|ZP_06808087.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294973789|gb|EFG49560.1| RsmE family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 254

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 17/254 (6%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKS 64
           ++R F++   + +  Q +   + YH++ +V+RM+ GD ++L    +  ++ + IS  GK 
Sbjct: 1   MQRYFIEEETVQLNDQIEMDKEAYHHMLNVMRMQIGDQVMLVTQTEQVFIGELISDQGKK 60

Query: 65  IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              + VE +   +    D        K ++LD ++QK+ E+G   I PV  RY+      
Sbjct: 61  AVLRLVELREEIKEIPVDTTLFVGLPKGDKLDLIVQKATELGARHIVPVAMRYSVTKWDQ 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR++     AAEQ     +P I    ++  +        Q+  A E       
Sbjct: 121 KKAGKKIDRLKKIAKEAAEQSHRTFVPTIEDLHSVSMVKNRLGEFDQVCVAYEEVAKSGE 180

Query: 178 LEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAVA 232
              L     ++     +A + GPEGG HS+E       L  V    LGPRILR++TA + 
Sbjct: 181 AALLAKTYASLKAKDRIAFITGPEGGIHSDEIADFTDGLDHVHLCGLGPRILRTETAPLY 240

Query: 233 AMALVQA---ICGD 243
            ++ +     + GD
Sbjct: 241 LLSSLSFATELLGD 254


>gi|148543950|ref|YP_001271320.1| hypothetical protein Lreu_0719 [Lactobacillus reuteri DSM 20016]
 gi|184153346|ref|YP_001841687.1| hypothetical protein LAR_0691 [Lactobacillus reuteri JCM 1112]
 gi|227364863|ref|ZP_03848910.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           MM2-3]
 gi|325682512|ref|ZP_08162029.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530984|gb|ABQ82983.1| protein of unknown function DUF558 [Lactobacillus reuteri DSM
           20016]
 gi|183224690|dbj|BAG25207.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070126|gb|EEI08502.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           MM2-3]
 gi|324978351|gb|EGC15301.1| RsmE family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 246

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 14/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+       +     +  H+L  V+R + G  + L       +L+ +S    +  
Sbjct: 1   MQRYFVNA--TPADEVTLPPEAAHHLLKVMRAEVGTTVELVLADHCVYLATLSATEPTAT 58

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            K+  +  + ++    V       K   + + ++QK+ E+G   I       +       
Sbjct: 59  LKINQKLDADSELPVSVTLACGLPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGN 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                ++R++    SAAEQ     +P +     L+ LL N+    +IV  +E+     + 
Sbjct: 119 KQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLANYPATERIVAWEESAKQGETS 178

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              ++ +A+    ++  + GPEGG    E   ++    V    LGPRILR++TA +  MA
Sbjct: 179 ALAQQFNALKPGDSILAVFGPEGGLSENEIAKMNEAG-VVAAGLGPRILRTETAPLYFMA 237

Query: 236 LVQA 239
            +  
Sbjct: 238 AISY 241


>gi|324990424|gb|EGC22362.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK353]
 gi|327459571|gb|EGF05917.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1]
 gi|327490771|gb|EGF22552.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 250

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              VE  + +      V       K ++L+++ QK+ E+G  AI        V     + 
Sbjct: 59  LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L       +I+ A E    E    
Sbjct: 119 LGKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                L  +     V  + GPEGG   +E +       V+   LGPRILR++TA + A+ 
Sbjct: 179 ALFRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|161506354|ref|YP_001573466.1| hypothetical protein SARI_04551 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867701|gb|ABX24324.1| hypothetical protein SARI_04551 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 210

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95
           M  G  + LF+G +  + ++I    K        +     ++S +      +  +  +++
Sbjct: 1   MGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVMSRGEKME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKS+E+G+  I P+ +         +  +    + +   I+A EQC    +P I PP
Sbjct: 61  FTIQKSIELGVSLITPLFSERCGVKLDSERLNKKRQQWQKIAIAACEQCGRNRVPEIRPP 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             LE      D   ++        S N+L        +  V +LIGPEGG  ++E     
Sbjct: 121 MALEAWCAEQDSGLKLNLHPRAHASINTLPL-----PVERVRLLIGPEGGLSADEIAMTA 175

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 RYQF-TDILLGPRVLRTETTALTAITALQVRFGD 208


>gi|254429679|ref|ZP_05043386.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881]
 gi|196195848|gb|EDX90807.1| conserved hypothetical protein TIGR00046 [Alcanivorax sp. DG881]
          Length = 239

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 16/233 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R F D         +      H++  VLRM  GD +++FNG+ GEWL+ I+ + K    
Sbjct: 3   RRFFDDQDFLSGQAVELGASASHHIGKVLRMAVGDELVVFNGRGGEWLASIAAISKKA-V 61

Query: 68  KVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            +E Q      +T    V      IK  R+DY IQK+ E+G G +  + T         +
Sbjct: 62  TIEPQAFTDEDRTAPLAVTVALPMIKGERMDYAIQKATELGAGELVILDTERCEVRLKGE 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +   +   ISA EQC +  +P +    +L   L +     +++          + 
Sbjct: 122 RQDKKLAHWQQVAISACEQCGMNRVPAVRGVLSLRDWLASDLPALKLIAHPGEKPFSPA- 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
               A+   P +A+L GPEGG+  +E +      F TP +LG R+LR++TA V
Sbjct: 181 ----ALQTQPALALLTGPEGGFSDDELQRAADAGF-TPFALGNRVLRAETAPV 228


>gi|163788243|ref|ZP_02182689.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium
           ALC-1]
 gi|159876563|gb|EDP70621.1| hypothetical protein FBALC1_07678 [Flavobacteriales bacterium
           ALC-1]
          Length = 234

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 8/231 (3%)

Query: 7   LKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++ LF +  +    T      ++  ++  VLR K+GD + + NG    + +++S    K 
Sbjct: 1   MQ-LFYNSNISENDTHFSFDKEESRHIVKVLRKKDGDKLHITNGNGWLFEAELSIADIKH 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               +  ++    +  ++    SP K  +R ++ ++K+ E+G+  I P+I  +++     
Sbjct: 60  CSVSINSKTLQGKRSYNLHLAVSPTKMNDRYEWFLEKATEIGIETITPIICDHSERKVVK 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R      SA +Q     LP +  P   +  + N D + Q   A      + SL+    
Sbjct: 120 TERFEKIIQSAMKQSLQCYLPKLNAPIAFKDFI-NEDFSGQKFIAHCEETDKKSLK--SQ 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           I+   +  ILIGPEG +  +E E      ++ P++LG   LR++TAA+ A 
Sbjct: 177 ISKNKDCTILIGPEGDFSVKEIEMALQHNYI-PVTLGETRLRTETAAIVAC 226


>gi|332878544|ref|ZP_08446264.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683445|gb|EGJ56322.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 242

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 7/232 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +        +      ++  ++A VLR K+GD + + NGK   +  ++S+   K  
Sbjct: 1   MQLFYHPNIDKNTSNCFFDKEESQHIAKVLRKKQGDTLHITNGKGFLFEGQLSFASPKQC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
              +        +   +  + +P K   R ++ ++K+ E+G+  I P+I ++++ T   +
Sbjct: 61  EVSILKCQEQIHRPYHLHLVVAPTKMNERYEWFLEKATEIGIDEITPIICQHSERTSLKL 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLH 182
           +R     +SA +Q     LP +  P T     K    D + + +   +          L 
Sbjct: 121 ERFEKIILSAMKQSLQCYLPTLNSPITSAAFFKQMMTDTSDKYIAHCQENEKILLSNALT 180

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            ++    + ILIGPEG +  EE  T  +  F  P+SLG   LR++TAA+ A 
Sbjct: 181 PLSE--RITILIGPEGDFSEEEISTAIAQGF-RPISLGDTRLRTETAAIVAC 229


>gi|296112908|ref|YP_003626846.1| putative RNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295920602|gb|ADG60953.1| putative RNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326567975|gb|EGE18072.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis BC1]
 gi|326577430|gb|EGE27314.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis O35E]
          Length = 247

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 18/242 (7%)

Query: 7   LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL    I           H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118
           KS   K++ Y   ++T            + +R+DY IQK+ EMG+  I  + +   Q   
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120

Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +   ++  ++A EQC +  +P I  P  L+  + N     ++V A     + 
Sbjct: 121 KYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +  KL       N+++LIG EGG    E +      FV P  +G R+LR++TA V A++
Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVVALS 233

Query: 236 LV 237
            +
Sbjct: 234 AL 235


>gi|260888226|ref|ZP_05899489.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC
           35185]
 gi|330838435|ref|YP_004413015.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas
           sputigena ATCC 35185]
 gi|260862060|gb|EEX76560.1| RNA methyltransferase, RsmE family [Selenomonas sputigena ATCC
           35185]
 gi|329746199|gb|AEB99555.1| Ribosomal RNA small subunit methyltransferase E [Selenomonas
           sputigena ATCC 35185]
          Length = 261

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 128/248 (51%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           ++R+F++  +    + +  G   H+L  V+R K G+ +L+ +G  G   ++++ +    +
Sbjct: 1   MRRVFLEGEIADTMEVR--GADAHHLQRVMRAKLGEKLLVADGAGGSAEAEVAGFADGRV 58

Query: 66  RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + + V   S +   Q++++      K +R+D+++QK+ E+G+  IRPV+++        +
Sbjct: 59  QLRFVRRLSEAAESQAEIELFQCLPKGDRMDFIVQKTTELGVACIRPVLSQNVVVRYDEK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSE 175
                ++R +     AA+QC    +P + P   L   ++     ++  ++ F +     E
Sbjct: 119 KARARVERWQKIAAEAAKQCGRTRIPEVMPIVPLRAAMEGQGAAEYALRLFFYEMEERRE 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L  + + +    + +L+GPEGG+   E +   +  F + ++LG RILR DTAA+ A+A
Sbjct: 179 --LRTVLSDSEARRIFMLVGPEGGFDEAEAQLAVAHGF-SAVTLGRRILRVDTAAIVALA 235

Query: 236 LVQAICGD 243
           LVQ   GD
Sbjct: 236 LVQYEKGD 243


>gi|332364867|gb|EGJ42636.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 247

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              VE  + +      V       K ++L+++ QK+ E+G  AI        V     + 
Sbjct: 59  LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L       +I+ A E    E    
Sbjct: 119 LGKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                L  +     V  + GPEGG   +E +       V+   LGPRILR++TA + A+ 
Sbjct: 179 ALFRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|163754910|ref|ZP_02162031.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1]
 gi|161324977|gb|EDP96305.1| hypothetical protein KAOT1_02812 [Kordia algicida OT-1]
          Length = 235

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 6/230 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +             S ++  ++  VLR KE D + + NGK   + + I+    K+ 
Sbjct: 1   MQLFYTPEITSETKNYTFSKEESRHIVRVLRKKEDDILHITNGKGYIFSAIITVADQKNC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K++       K   +    +P K  +R ++ ++K+ E+G+  I P+I  +++      
Sbjct: 61  MVKIQSFEFQPQKSYKLHLAVAPTKMNDRYEWFLEKATEIGIDTITPIICDHSERKVIKA 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R      SA +Q      P + P  +    +         +   E    ++  E L   
Sbjct: 121 ERFEKIIQSATKQSLSAYFPKLKPAISFSNFISTHTDEQLFIAHCEENEKQSLKEALKI- 179

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               +V ILIGPEG + ++E +      ++ P++LG   LR++TAA+ A 
Sbjct: 180 --QKDVTILIGPEGDFSTKEIQLALDHNYI-PVTLGETRLRTETAAIVAC 226


>gi|78224577|ref|YP_386324.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter metallireducens
           GS-15]
 gi|78195832|gb|ABB33599.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 263

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 109/245 (44%), Gaps = 11/245 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           +R             +  GD + ++  VLR+K    + L +G   E    I  +G+  + 
Sbjct: 4   RRFMAPGADLAGESVRIEGDLFRHMVKVLRLKIDTRVRLADGHGVECAGIIQEIGRDHLT 63

Query: 67  FKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             VE +           +  I    K  +++ ++QK  E+G+  + P     +       
Sbjct: 64  VAVEERHAVAPVGGSLRITLIQGLPKGEKMELILQKGTELGVNEVVPFQADRSVSRIPAD 123

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +     AA Q   L +P +     ++  +++ DH+ +++  +E   +    
Sbjct: 124 RQDERLRRWQRIAAEAARQAGRLDIPTVQLAQGMDEAVRDTDHDLKLLLWEEERAT-TLQ 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             ++      ++A+++GPEGG   EE ET     F+ P++LG RILR++TA +A +A++Q
Sbjct: 183 GAINVRPRPASIAVIVGPEGGLTREEAETARRTGFI-PVTLGRRILRTETAGIALLAILQ 241

Query: 239 AICGD 243
            + GD
Sbjct: 242 YLYGD 246


>gi|255693403|ref|ZP_05417078.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM
           17565]
 gi|260620787|gb|EEX43658.1| RNA methyltransferase, RsmE family [Bacteroides finegoldii DSM
           17565]
          Length = 232

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80
           +   ++  +   VLR+  GD I L +GK   + ++I+    K     + E   +      
Sbjct: 14  ELPDEEAQHCIRVLRLNIGDEITLTDGKGNFYKAEITAATNKRCLVAIKETVFQEPLWPC 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA +Q  
Sbjct: 74  HLHIGMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              LP +   T  +  + + +     I    E  G +  L+ +  +    +  +LIGPEG
Sbjct: 134 KARLPKLNEMTDFDKFITREFKGQKFIAHCYE--GDKPLLKNI--LKPGEDALVLIGPEG 189

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  EE +      FV P+SLG   LR++TAA+AA  ++ 
Sbjct: 190 DFSEEEVKKAIEQGFV-PISLGKSRLRTETAALAACHILN 228


>gi|319892635|ref|YP_004149510.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162331|gb|ADV05874.1| Ribosomal RNA small subunit methyltransferase E [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464327|gb|ADX76480.1| ribosomal RNA small subunit methyltransferase E, probable
           [Staphylococcus pseudintermedius ED99]
          Length = 250

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 101/247 (40%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--K 63
           ++R F++       +   + +   H++  V+R   GD +++       +  KI  +   +
Sbjct: 1   MQRYFLNENAEQHQRFFITNNNDIHHIKSVMRQNVGDALIINFLNAVTYRCKIIDIEAQR 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
                VE          ++      IK ++ ++++QK+ E+G  +       R V+    
Sbjct: 61  ITIETVERIEVETELPLNITICSGLIKGDKYEWLLQKATELGATSFIITQMDRSVVKLNQ 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q     ++R +     AAEQ     +P +   + L  +         ++ A E    +N 
Sbjct: 121 QKAAKKVERWQKIVKEAAEQSYRQAVPQVKFVSNLHEIYDMIGQYDCVLMAYEAAAKQNE 180

Query: 178 L----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                ++L    H  +V +L GPEGG+   E      +     + LGPRILR++TA + A
Sbjct: 181 RALFKQQLRQFKHGSHVLLLFGPEGGFSENEIALFEDV--AQSVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISYE 245


>gi|254447345|ref|ZP_05060811.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium
           HTCC5015]
 gi|198262688|gb|EDY86967.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium
           HTCC5015]
          Length = 245

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 14/244 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRF 67
           RL+ D  L +  +        H+L  VLR  +G  +LLFN + D E+ +++    K    
Sbjct: 5   RLYCDQVLNVGDEVTLDAVTSHHLCTVLRAHQGSIVLLFNNREDAEYEAELIKPHKKNAC 64

Query: 68  KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
               Q     +     +       + +R+D+ IQK+ EMG   I PV+   +      + 
Sbjct: 65  VRLTQRVECFRESSLYIHLYQGVSRGDRMDFAIQKATEMGAHEITPVLCERSQIKLSGER 124

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                   +   ISA +Q     L  +      +  L   D     +F D          
Sbjct: 125 GEKKRAHWQQIIISACQQSGRCRLAKLNAVQHFQEALLQRDAQSVGLFLDTQTSQSGDA- 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              A+     V + IGPEGG+   E +       +  +SLGPRILR++TAA+AA+   Q 
Sbjct: 184 ---ALRQAQRVDLWIGPEGGFDPTEVQAAQDQG-LASVSLGPRILRTETAAIAALTYCQL 239

Query: 240 ICGD 243
           I GD
Sbjct: 240 ISGD 243


>gi|257885342|ref|ZP_05664995.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821198|gb|EEV48328.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 254

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+      K      G+ YH++  V+RM+  D + L        +++I+ + +   
Sbjct: 1   MQRYFLKESYESKDYFVLEGENYHHIVRVMRMEPEDEVFLAFNDRIAIVAEITEITEEAV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
           +  +++ +   +   S +       K  +LD+++QKS E+G  A         V+    +
Sbjct: 61  YLKEIKKEENQKELPSSITIASGYPKGEKLDWIVQKSTELGAQAFLGFPASASVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                  R+      AAEQ     +P +    T + L +  D    ++ A E    +   
Sbjct: 121 KRMKRQQRLEKIAQEAAEQSHRQIVPSVELLETKQDLFERLDDYDVVLVAYEESAKQGEK 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N+ + L        +  + GPEGG   +E +       +    LGPRILR++TA +  +
Sbjct: 181 SNAAKILSETKPDSRILAVFGPEGGLSRDEVDYFVEHKGIL-CGLGPRILRTETAPLYLL 239

Query: 235 ALVQAIC 241
           +      
Sbjct: 240 SAASYQW 246


>gi|314936302|ref|ZP_07843649.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp.
           hominis C80]
 gi|313654921|gb|EFS18666.1| RNA methyltransferase, RsmE family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 250

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 103/247 (41%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKAS-GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           ++R F++       +   +  +  H++ +V+R   G+ I++       ++S+I+ +  + 
Sbjct: 1   MQRYFINQNADSHQRFFITNEEDIHHIKNVMRNTVGNKIIINFNDKKVFISEITNINSNQ 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                +           DV      IK ++ ++++QKS E+G      V    +      
Sbjct: 61  IEILPINQLDIDTELPVDVTICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQE 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +DR +     AAEQ   L +P +   + L+ +    ++   ++ A E       
Sbjct: 121 NKVQKKIDRWQKIVKEAAEQSYRLVIPDVKFQSNLKVIYDTINNYDYVLIAYEDEAKHGE 180

Query: 178 LEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             +    L+       V I+ GPEGG+  +E +    +     + LGPRILR++TA + A
Sbjct: 181 KSRFKNILNNFQTNDRVLIIFGPEGGFSDKEIDLFREVS--LNVGLGPRILRAETAPLYA 238

Query: 234 MALVQAI 240
           ++ +   
Sbjct: 239 LSAISFE 245


>gi|56552450|ref|YP_163289.1| 16S ribosomal RNA methyltransferase RsmE [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544024|gb|AAV90178.1| protein of unknown function DUF558 [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 256

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L RL+V+  L ++        Q HYL  V+R K G  ++LF+   GEWL ++   G K +
Sbjct: 12  LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           + K+ +    +    D+  + +PIK  R+D++ +K+ E+G+  I PVIT+ T     N++
Sbjct: 72  QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++ + + AAEQC   +L  +    +L+ LL  W  +  + FADET G E  +E L    
Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADET-GGEPMIEALSKRK 190

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                AIL+GPEGG+  +E++ ++++    P+SLGPRILR
Sbjct: 191 MA--AAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILR 228


>gi|169334045|ref|ZP_02861238.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258762|gb|EDS72728.1| hypothetical protein ANASTE_00438 [Anaerofustis stercorihominis DSM
           17244]
          Length = 249

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 115/244 (47%), Gaps = 15/244 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R F         +     +   ++   LRMKEGDNI + +    ++  ++    +++
Sbjct: 10  KMPRFFCINK--ENDRFYLDKEDSKHIIKSLRMKEGDNITICDKNGYDYECELIIDSENV 67

Query: 66  RFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + K+  +  + T+    +    +  K+++ + ++QK+VE+G+  I P++T         +
Sbjct: 68  QGKIISKKENDTEPNVKITLYQALPKSDKFETIVQKTVELGIYEIVPIMTNRCISRPDKK 127

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
           +    ++R       AA+Q     +P +    T +  +K   D + +I+F +   G EN 
Sbjct: 128 SMKKKIERYNKIAFEAAKQSGRGIIPRVRDMITFKEAIKEIKDFDMKILFYEN--GGENL 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +      ++ ++A ++G EGG+ + E +       VT + LG RILR +TA +AA++ +
Sbjct: 186 KD--FKYENLNDIAFIVGSEGGFDALEAKYAKENE-VTLMGLGKRILRCETAPIAALSAL 242

Query: 238 QAIC 241
             + 
Sbjct: 243 MLLT 246


>gi|253698878|ref|YP_003020067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sp. M21]
 gi|251773728|gb|ACT16309.1| protein of unknown function DUF558 [Geobacter sp. M21]
          Length = 246

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  F+            +G+ Y ++A VLR+KEG  + L           +  VG K +
Sbjct: 1   MRSFFLGDNAVCGDSVTITGELYRHMARVLRIKEGSEVELIENGGARHRGTVEEVGAKKL 60

Query: 66  RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
             ++        ++    +  +    K  +LD ++QK  E+G+  +      R V+  + 
Sbjct: 61  TVRISASVAPSAEEPGLRITLLQGMPKGEKLDLILQKCTELGVAEVVVFDAARSVVKLHG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             +   + R       AA Q    + P +    TL  +L +  H  +++   E       
Sbjct: 121 DRSAARLSRYEKIVQEAARQSGRHSSPKVALGGTLAEVLADSSHEVKLLL-YEGEEKTTL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +   A+    +VA+++GPEGG   EE     +  F TP++LG RILR++TA +A ++++
Sbjct: 180 HDCFGAVVAPKSVAVVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSIL 238

Query: 238 QAICGD 243
           Q   GD
Sbjct: 239 QFHWGD 244


>gi|226324635|ref|ZP_03800153.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758]
 gi|225207083|gb|EEG89437.1| hypothetical protein COPCOM_02420 [Coprococcus comes ATCC 27758]
          Length = 245

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   FV        + +  G   +++ +VLRMK  +   + +G+   +L ++    + + 
Sbjct: 1   MHHFFVTPQQISGDKIRIEGGDVNHMKNVLRMKLHEKAEISDGESRTYLCEVEAYEEDVA 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
               +E         S +       K+++++ ++QK+VE+G+  + PV  + +       
Sbjct: 61  VLHILEEMEADTEPASKLYLFQGLPKSDKMELIVQKAVELGVYQVIPVAMKRSVVRLDDK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 DR  +   SAA+Q     +P +  P + +  LK  +  +  ++  +   G E +
Sbjct: 121 KAAKKADRWNSIAESAAKQAGRSRIPEVTMPLSYKEALKMAEELDVTLLPYELAGGMEVT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E +  I    +V I IGPEGG+  EE +   S+     ++LG RILR++TA +A +A++
Sbjct: 181 REVIRQIKSGQSVGIFIGPEGGFEPEEVDAAVSMG-ARVITLGRRILRTETAGLATLAIL 239

Query: 238 QAIC 241
               
Sbjct: 240 MFEL 243


>gi|323345370|ref|ZP_08085593.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093484|gb|EFZ36062.1| RsmE family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 248

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 8/240 (3%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
            ++  +V        Q +   D+  +   VLR+K GD   L +G    + ++++    K 
Sbjct: 3   EMRYFYVP---DAGRQTELPPDEAAHALRVLRLKAGDEFFLMDGAGSFFRAELTVTSAKR 59

Query: 65  IRFKVE-YQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             + V+    +++T    +    +P K   R++++++K+ E+G   +  +  R+++    
Sbjct: 60  CMYAVKAVLPQTKTWNGHIHLAIAPTKMMERMEWLVEKATEIGFDELSLLDCRFSERRQV 119

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKL 181
              R+    +SA +Q      P ++  T  +  +++       I    +    E+  +KL
Sbjct: 120 KTARLEKIVVSAVKQSRKPWKPLVHEMTDFKTFVESRQKGRYFIAHCYDDVPKEDLYDKL 179

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +   +V +LIGPEG +  EE           P+SLG   LR++TA + A+++ Q   
Sbjct: 180 TKHSGNEDVTVLIGPEGDFSIEEVNFALEHG-CEPVSLGASRLRTETAGLLAVSMAQLAF 238


>gi|148380908|ref|YP_001255449.1| hypothetical protein CBO2956 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934252|ref|YP_001385216.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934969|ref|YP_001388685.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A
           str. Hall]
 gi|148290392|emb|CAL84519.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152930296|gb|ABS35796.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930883|gb|ABS36382.1| RNA methyltransferase, RsmE family [Clostridium botulinum A str.
           Hall]
          Length = 252

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 28/256 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K  +
Sbjct: 1   MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
             K+  Q     +   ++       K+ ++D ++QKS E+G+  I PVIT   +      
Sbjct: 61  VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLK 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P +  P     LL+       IV   E+  +     
Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180

Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            +  I +                         +   E   L  +     ++LGPRI R++
Sbjct: 181 LIKNIEYEKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231

Query: 228 TAAVAAMALVQAICGD 243
           TA +   +++    GD
Sbjct: 232 TAGIVCASIISYELGD 247


>gi|170756725|ref|YP_001782589.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum B1
           str. Okra]
 gi|226950382|ref|YP_002805473.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A2
           str. Kyoto]
 gi|169121937|gb|ACA45773.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum B1
           str. Okra]
 gi|226842685|gb|ACO85351.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A2
           str. Kyoto]
          Length = 252

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 28/256 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K  +
Sbjct: 1   MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
             K+  Q     +   ++       K+ ++D ++QKS E+G+  I P+IT   +      
Sbjct: 61  VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P +  P     LL+       IV   E+  +     
Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180

Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            +  I +                         +   E   L  +     ++LGPRI R++
Sbjct: 181 LIKNIEYKKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231

Query: 228 TAAVAAMALVQAICGD 243
           TA +   +++    GD
Sbjct: 232 TAGIVCASIISYELGD 247


>gi|168181642|ref|ZP_02616306.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf]
 gi|237796409|ref|YP_002863961.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum Ba4
           str. 657]
 gi|182675193|gb|EDT87154.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Bf]
 gi|229262623|gb|ACQ53656.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum Ba4
           str. 657]
          Length = 252

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 28/256 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K  +
Sbjct: 1   MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
             K+  Q     +   ++       K+ ++D ++QKS E+G+  I PVIT   +      
Sbjct: 61  VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPVITERVEVKASLK 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P +  P     LL+       IV   E+  +     
Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEETKGMDLIVVPYESKENYGIKS 180

Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            +  I +                         +   E   L  +     ++LGPRI R++
Sbjct: 181 LIKNIEYEKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231

Query: 228 TAAVAAMALVQAICGD 243
           TA +   +++    GD
Sbjct: 232 TAGIVCASIISYELGD 247


>gi|170758760|ref|YP_001788269.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405749|gb|ACA54160.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum A3
           str. Loch Maree]
          Length = 252

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 100/256 (39%), Gaps = 28/256 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K  +
Sbjct: 1   MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
             K+  Q     +   ++       K+ ++D ++QKS E+G+  I P+IT   +      
Sbjct: 61  VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P +  P     LL+       IV   E+  +     
Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPNVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180

Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            + +I +                         +   E   L  +     ++LGPRI R++
Sbjct: 181 LIKSIEYEKENIKNIGIIIGPEGG--------FEESEIRALEKIK-AQIVTLGPRIFRTE 231

Query: 228 TAAVAAMALVQAICGD 243
           TA +   +++    GD
Sbjct: 232 TAGIVCASIISYELGD 247


>gi|77920669|ref|YP_358484.1| hypothetical protein Pcar_3079 [Pelobacter carbinolicus DSM 2380]
 gi|77546752|gb|ABA90314.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 244

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           + R F+   +        + +   ++A VLR+  G  ILL +G       +I ++  KS 
Sbjct: 1   MHRFFIAPDVLRHDHIALTDEILRHMA-VLRLARGAEILLLDGLGNLCHCRIDHLDRKSG 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              V  +   Q     V+ + +  K ++++ ++QK  E+G+    P+ T  +      + 
Sbjct: 60  SAMVLSRCTQQETAFPVELMQALPKADKMELVLQKGTELGITGFTPLQTSRSVPRLKPER 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R       AA QC    LP +     L+  L       +++  +E       L+
Sbjct: 120 ETQRHQRWLRIIREAARQCRRPLLPSLAAIRPLDEALGQCRSELRLMLWEE---GSQPLD 176

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +         A+LIGPEGG+  EE ET     FV P+  GPRILRS+TA  AA  ++Q 
Sbjct: 177 AVLPERIPAGAAVLIGPEGGFSREEAETARQHGFV-PVLFGPRILRSETAGFAAATILQY 235

Query: 240 ICGD 243
             GD
Sbjct: 236 RYGD 239


>gi|240145922|ref|ZP_04744523.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82]
 gi|257201987|gb|EEV00272.1| RNA methyltransferase, RsmE family [Roseburia intestinalis L1-82]
          Length = 251

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 112/245 (45%), Gaps = 17/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FV+     K      G   +++ +VLRMK G+ I +       +  +I+ +  S +
Sbjct: 1   MYQFFVESGQIGKDSVMIEGSDVNHIKNVLRMKPGEKIRISGPARENYFCEIAEIEDSFV 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           R  +  +  + T+  + +       K ++++ +IQK+VE+G+  I PV  +        +
Sbjct: 61  RASILEKDETGTELPNRIYLFQGLPKNDKMELIIQKAVELGVYEIIPVAMKNCV---VKL 117

Query: 125 D---------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGS 174
           D         R +    SAA+Q     +P +  P + +  +      + ++V  +   G 
Sbjct: 118 DAKKAAAKTARWQGIAESAAKQSKRSLIPKVSEPVSYKEAVAYAMKLDQKLVPYENERGM 177

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             + E + A+    ++ I IGPEGG+  EE E +     +  +SLG RILR++TA    +
Sbjct: 178 AATREAVEAVRPGESIGIFIGPEGGFAPEEIEAVK--GEMKLISLGSRILRTETAGFTTL 235

Query: 235 ALVQA 239
           A++  
Sbjct: 236 AILMY 240


>gi|157150621|ref|YP_001451092.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075415|gb|ABV10098.1| conserved hypothetical protein TIGR00046 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 247

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 14/245 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KE D + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEDDQVTLVFDDGVKRLARVLDSSQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK+ E+G  AI        V     + 
Sbjct: 59  LEILEELADNSELPVRVTIASGFPKGDKLEFIAQKATELGASAIWGFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L        IV A E    E    
Sbjct: 119 LDKKTEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAQLAQFDTIVVAYEESAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +A    V  + GPEGG   +E +  H    V+   LGPRILR++TA +  + 
Sbjct: 179 ALVRALSGLAAGAKVLFIFGPEGGLSPDEIDAFHQAGAVSA-GLGPRILRAETAPLYVLT 237

Query: 236 LVQAI 240
            V  +
Sbjct: 238 AVSVL 242


>gi|194467763|ref|ZP_03073749.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23]
 gi|194452616|gb|EDX41514.1| protein of unknown function DUF558 [Lactobacillus reuteri 100-23]
          Length = 246

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 14/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+       +     +  H+L  V+R + G ++ L       +L+ +S    +  
Sbjct: 1   MQRYFVNA--TPADEVTLPSEAAHHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTAT 58

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            K+  +  + ++    V       K   + + ++QK+ E+G   I       +       
Sbjct: 59  LKINQKLDADSELPVSVTLACGIPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGN 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                ++R++    SAAEQ     +P +     L+ LL N+    +IV  +E+     + 
Sbjct: 119 KQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLANYPATERIVAWEESAKQGETS 178

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              ++ +A+    ++  + GPEGG    E   ++    V    LGPRILR++TA +  MA
Sbjct: 179 ALAQQFNALKPGDSILAVFGPEGGLSENEIAKMNEAG-VVAAGLGPRILRTETAPLYFMA 237

Query: 236 LVQA 239
            +  
Sbjct: 238 AISY 241


>gi|325689540|gb|EGD31545.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK115]
          Length = 250

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 20/249 (8%)

Query: 7   LKRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ F+      PL          D   ++  V+R+K GD +        + L+++    
Sbjct: 1   MQQYFIKGNPQTPL-----VVTDKDTAKHMFSVMRLKAGDQVTFVFDDGVKRLARVLDPS 55

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
           +     VE  + +      V       K ++L+++ QK+ E+G  AI        V    
Sbjct: 56  QQSLEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWGFPADWSVAKWD 115

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +      +++      AAEQ     +P I         L       +I+ A E    E 
Sbjct: 116 GKKLAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKVDFLAALTDFDRIIVAYEELAKEG 175

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                +  L  +A    V  + GPEGG   +E         V+   LGPRILR++TA + 
Sbjct: 176 ESAALVRALSGLAAGAKVLFIFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLY 234

Query: 233 AMALVQAIC 241
           A+  V  + 
Sbjct: 235 ALTAVSVLL 243


>gi|260583902|ref|ZP_05851650.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC
           700633]
 gi|260158528|gb|EEW93596.1| RNA methyltransferase, RsmE family [Granulicatella elegans ATCC
           700633]
          Length = 250

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F++     +  +     DQ H++  V+RM   ++  + +  +  +++KI+ +    
Sbjct: 1   MQRYFINQVVQSVGEKISVLKDQEHHMLKVMRMNIEESCEVVDENEQLYIAKITQLSPFE 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV------ITRYTQN 119
               E++ +      DV       K ++L+ ++QK+ E+G+  I PV      +      
Sbjct: 61  LRIEEHKEQQVELPIDVTIFVGLSKGDKLETIVQKATELGVHTIVPVEMKRNMVKWTKDK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF--LLKNWDHNCQIVFADETCGSENS 177
           +   ++R++     AAEQ   L +P +    TL+   +L        + F +     E +
Sbjct: 121 SQKKIERLQKIAQEAAEQSHRLHVPKVLDLMTLKESVVLAKQSTKALVAFEEVAKEGEAA 180

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             ++ L ++    ++A   GPEGG+  +E E L+S   V   +LGPRILR++TA + A+A
Sbjct: 181 VFVQTLTSLQKGDSIAFYFGPEGGFDLQEIEYLNSQE-VHSCALGPRILRAETAPMYALA 239

Query: 236 LVQAIC 241
            V    
Sbjct: 240 AVSYHF 245


>gi|120436000|ref|YP_861686.1| 16S ribosomal RNA methyltransferase RsmE [Gramella forsetii KT0803]
 gi|117578150|emb|CAL66619.1| protein containing DUF558 [Gramella forsetii KT0803]
          Length = 237

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 5/230 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +         Q     D+  ++  VLR  EGD + + NG      ++I     K  
Sbjct: 1   MQLFYNPEISEKDKQIIFPKDESKHIVKVLRKSEGDILNITNGNGLLINAEIIKADIKQC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             KV    +       V  I +P K  +R ++ ++K++E+G+  I P+I  +++     +
Sbjct: 61  LAKVISVEKQPAPPYYVHMIVAPTKMNDRYEWFLEKAMEIGVHEITPIICDHSERKVVKL 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R      SA +Q     +P +  P      +       + +   E    +N L+  + I
Sbjct: 121 NRFERVLQSAMKQSLHYRMPKLNDPINFSDFIATEIEGSKYIAHCEEETGKNYLQ--NEI 178

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               N+ ILIGPEG +  EE E   +  +   +SLG   LR++TAA+ A 
Sbjct: 179 IPGENINILIGPEGDFSKEEIEKAINKGW-NAVSLGDSRLRTETAAIVAC 227


>gi|323353566|ref|ZP_08088099.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66]
 gi|322121512|gb|EFX93275.1| RsmE family RNA methyltransferase [Streptococcus sanguinis VMC66]
          Length = 250

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 20/249 (8%)

Query: 7   LKRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ F+      PL +        D   ++  V+R+KEGD + L      + L+++    
Sbjct: 1   MQQYFIKGSPQSPLAVT-----DKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPS 55

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
           +     +E  + +      V       K ++L+++ QK  E+G  AI        V    
Sbjct: 56  QQSLEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWD 115

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +      +++      AAEQ     +P I         L       +I+ A E      
Sbjct: 116 GKKLAKKSEKLEKIAQGAAEQSKRNLIPEIRLFNKKADFLATLADFDRIIVAYEESAKAG 175

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                +  L  +A    V  + GPEGG   +E         V+   LGPRILR++TA + 
Sbjct: 176 ETAALVSALSGLAAGAKVLFIFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLY 234

Query: 233 AMALVQAIC 241
           A+  V  + 
Sbjct: 235 ALTAVSVLL 243


>gi|325688555|gb|EGD30572.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 250

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    + I
Sbjct: 1   MQQYFIKGSPQSP--LLVTDKDTAKHMFSVMRLKEGDQVTLVFDDGMKRLARVLDPSQQI 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              VE  + +      V       K ++L+++ QK+ E+G  AI        V     + 
Sbjct: 59  LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGTSAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +                  I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFQAALADFDCIIIAYEESAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +A    V  + GPEGG   EE         V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLAAGAKVLFIFGPEGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|332886055|gb|EGK06299.1| hypothetical protein HMPREF9456_00173 [Dysgonomonas mossii DSM
           22836]
          Length = 234

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 10/234 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +    L      +   ++  +   VLR KEGD I L +GK   + ++I           
Sbjct: 6   FYTPDILSNP---ELPLEEAQHCIKVLRKKEGDEIFLTDGKGSFYDAEIIQANPKHCHVN 62

Query: 70  EYQSRSQTKQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             ++  Q K    ++   F+P K  +R+++  +K+ E+G+    P++  +++     + R
Sbjct: 63  ILKTIVQPKNWKCNIHIAFAPTKNIDRIEWFAEKATEIGVDRFSPLLCHHSERREIKLQR 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    +SA +Q     LP +    +    +K  D   Q   A      + SL+  + +  
Sbjct: 123 IEKILVSAMKQSQKAILPQLDEMQSFSKFVKQ-DFEAQKFIAHCYPSEKKSLKDAYKL-- 179

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             NV ILIGPEG +  +E E      F  P++LG   LR++TAA+AA   +  +
Sbjct: 180 GENVLILIGPEGDFSEQEVEEAMKNGF-QPVTLGESRLRTETAALAACHSIHVL 232


>gi|168179387|ref|ZP_02614051.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
           NCTC 2916]
 gi|182669772|gb|EDT81748.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
           NCTC 2916]
 gi|322807273|emb|CBZ04847.1| ribosomal RNA small subunit methyltransferase E [Clostridium
           botulinum H04402 065]
          Length = 252

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 28/256 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K  +
Sbjct: 1   MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
             K+  Q     +   ++       K+ ++D ++QKS E+G+  I P+IT   +      
Sbjct: 61  VVKILEQVEVNNENPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P +  P     LL+       IV   E+  +     
Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180

Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            +  I +                         +   E   L  +     ++LGPRI R++
Sbjct: 181 LIKNIEYEKENIKNIGIIIGPEGG--------FEESEIRALEEIK-AQIVTLGPRIFRTE 231

Query: 228 TAAVAAMALVQAICGD 243
           TA +   +++    GD
Sbjct: 232 TAGIVCASIISYELGD 247


>gi|325266078|ref|ZP_08132764.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394]
 gi|324982716|gb|EGC18342.1| 16S rRNA methyltransferase RsmE [Kingella denitrificans ATCC 33394]
          Length = 241

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R ++   L  + +         ++ HVLR++ GD I+LF+G+     + +  V K   
Sbjct: 1   MPRFYLPQ-LPNQGELALPESIVRHI-HVLRLQAGDEIVLFDGQGMRVAATLQQVEKRKA 58

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              ++    S ++    +  I +     R+D+ +QKSVE+G+ +I PV++         +
Sbjct: 59  ACTIDSFLESDSESPLRIHLIQAVSSGERMDFTLQKSVELGVASITPVLSERCVVRLQGE 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQC    +P + P   L   L+       +        +++  
Sbjct: 119 RADKRVQRWQEIAVSACEQCGRDIVPPVRPILRLADYLRQAAAEDGLKLLMSLQNAQSLR 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           EK  A      V +LIGPEGG+ + E++      F   ++LG RILR++TA++AA+A +Q
Sbjct: 179 EKQPAQRP---VYLLIGPEGGWTAAEEQAAVQAGF-EAITLGKRILRTETASLAAIAAMQ 234

Query: 239 AICGDW 244
            + GD+
Sbjct: 235 TLWGDF 240


>gi|315499603|ref|YP_004088406.1| hypothetical protein Astex_2610 [Asticcacaulis excentricus CB 48]
 gi|315417615|gb|ADU14255.1| protein of unknown function DUF558 [Asticcacaulis excentricus CB
           48]
          Length = 248

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/250 (35%), Positives = 138/250 (55%), Gaps = 15/250 (6%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           + RLF+     P         + DQ  Y+A V+R+ +GD I +FNG+DGEW  ++  V K
Sbjct: 1   MIRLFIAETTPPFAEGLIFPLNPDQARYVAAVMRLGDGDEISVFNGRDGEWRGRLQAVSK 60

Query: 64  S-IRFKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
             +  ++  Q+R Q    +    + + +K  RL+ +I+K+ E+G+G I+ +ITR T   H
Sbjct: 61  KHVHVELIAQARPQPAAGNAPKLLIALVKRGRLETIIEKATELGVGEIQLLITRRTNADH 120

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------ 175
            N+ R++     AAEQ + L +P +  P  LE  LK       +++ DE    E      
Sbjct: 121 TNLARLQLIAQEAAEQTERLDVPQVLAPVKLEVYLKAASET--LIYGDEDSTHETGERTI 178

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              LE L  +     V+ILIGPEGG+ + E++TL   P    ++LGPRILR+DTAA++A+
Sbjct: 179 SPMLEALSGLGEGA-VSILIGPEGGFDAVERQTLSVQPNTVAVNLGPRILRADTAAISAL 237

Query: 235 ALVQAICGDW 244
            L QA+ GDW
Sbjct: 238 TLYQAVRGDW 247


>gi|257870868|ref|ZP_05650521.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257805032|gb|EEV33854.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 251

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++     K      G+ +H++  V+RM   D + L        L+KI  + + + 
Sbjct: 1   MQRYFLNEDYEAKPVYVVEGEPFHHMVRVMRMVPDDCVYLVFQDQVAILAKIQQIDEQVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIR------PVITRYTQ 118
             +E +   Q K+  +    +    K ++L+ ++QK  E+G            V+    +
Sbjct: 61  HLIEVEKEQQDKELPIHVTIASGYPKGDKLELIVQKGTELGAAKFIGFPAQSSVVKWDHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---- 174
                  R++     AAEQ     +P I    + + L  +  +   ++ A E        
Sbjct: 121 KLQKKQQRLQKIAQEAAEQAQRQRVPIIQLAASDKELWDSLSNYDYVIVAYEESAKSGEN 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              ++ L   A    +  + GPEGG    E     S   V    LGPRILR++TA    +
Sbjct: 181 AKLIDILSKAAPGSKILAIFGPEGGLTPAEITRAESQGAV-ICGLGPRILRTETAPFYFL 239

Query: 235 ALVQAIC 241
           + V  + 
Sbjct: 240 SAVSVLT 246


>gi|153940109|ref|YP_001392233.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium botulinum F
           str. Langeland]
 gi|152936005|gb|ABS41503.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str.
           Langeland]
 gi|295320231|gb|ADG00609.1| RNA methyltransferase, RsmE family [Clostridium botulinum F str.
           230613]
          Length = 252

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 98/256 (38%), Gaps = 28/256 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV     I  +    GD   ++  VLR++ GD I + N +  E+  +I  + K   
Sbjct: 1   MHKFFVPAENIIDEKAIIDGDDVKHIYKVLRLECGDAININNCQGKEYKGEIESIDKKSV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
               +E    +     ++       K+ ++D ++QKS E+G+  I P+IT   +      
Sbjct: 61  VVKILEQVEVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEVKASLK 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P +  P     LL+       IV   E+  +     
Sbjct: 121 EFKKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKGMDLIVVPYESKENYGIKS 180

Query: 180 KLHAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            + +I +                         +   E   L  +     ++LGPRI R++
Sbjct: 181 LVKSIEYEKENIKNIGIIIGPEGG--------FEESEIRALEKIK-AQIVTLGPRIFRTE 231

Query: 228 TAAVAAMALVQAICGD 243
           TA +   +++    GD
Sbjct: 232 TAGIVCASIISYELGD 247


>gi|301309334|ref|ZP_07215276.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3]
 gi|300832423|gb|EFK63051.1| RNA methyltransferase, RsmE family [Bacteroides sp. 20_3]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 10/237 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +      I  + +   ++  +   VLR+ EGD I+L +G+   + + IS    K  
Sbjct: 1   MQIFYTP---DITIKPELPEEEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPKHC 57

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              + E   +      ++    +P K  +R+++ ++K+ E+G+ AI  +  R+++     
Sbjct: 58  EVTLLESWKQPDLWNFNLHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIK 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+    +SA +Q    TLP +   T  +  +     + +   A    G +  L+  H 
Sbjct: 118 PIRLEKILVSAMKQSQKATLPALEGMTDFKKFVAT-PFDGRKFIAHCEEGEKPLLK--HT 174

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                N  ILIGPEG +  EE +      F  P+SLG   LR++TAA+ A   +  +
Sbjct: 175 YQPGENALILIGPEGDFSPEEIKLAQENGF-EPISLGESRLRTETAALVACHTIHVL 230


>gi|238917092|ref|YP_002930609.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750]
 gi|238872452|gb|ACR72162.1| hypothetical protein EUBELI_01162 [Eubacterium eligens ATCC 27750]
          Length = 245

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           +   F +      +     G   +++ +VLR KEGD +L+ +G + ++   I+ +    I
Sbjct: 1   MYHFFAEHENIHDSYIDIVGSDVNHIKNVLRFKEGDKLLISSGDNVDYECSIASMSDEYI 60

Query: 66  RFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
           R  +  +    +   S +       K ++++ +IQK+VE+G  ++ PV  + +       
Sbjct: 61  RADILSKDEQGKELPSRIILFQGLPKADKMELIIQKAVELGAYSVVPVAMKRSVVKLDAK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE-TCGSENS 177
                ++R     +SAA+Q      P +    T +  L+      +++   E   G E +
Sbjct: 121 KAKAKVERWNGIALSAAKQSKRSIQPEVTEVMTFKQALEYAGKLDKLLLPYECAEGMEKT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +  I H  +V I IGPEGG+   E +   +      ++LG RILR++TA +  ++++
Sbjct: 181 RKVIEEIGHGESVGIFIGPEGGFDRSELDEAVNAG-CEIITLGKRILRTETAGMMLLSVL 239

Query: 238 QA 239
             
Sbjct: 240 MY 241


>gi|295134596|ref|YP_003585272.1| RNA methyltransferase [Zunongwangia profunda SM-A87]
 gi|294982611|gb|ADF53076.1| RNA methyltransferase [Zunongwangia profunda SM-A87]
          Length = 237

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 101/236 (42%), Gaps = 5/236 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  F         Q   S ++  ++  VLR  EG  + + NGK   + ++I     K  
Sbjct: 1   MQLFFQPDIEESAQQIVFSREESKHIIKVLRRSEGALLKVTNGKGLLFTAQIINADIKQC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+    +       +    +P K  +R ++ ++K+ E+G+  I PVI  +++     +
Sbjct: 61  VAKIIDTEKQAKPNYWLHLAVAPTKMNDRYEWFLEKATEIGVDEITPVICEHSERKVVKL 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DR      SA +Q     +P +  P      ++      + +   E       L+  HA 
Sbjct: 121 DRYERVLQSAMKQSLHFRMPKLNEPVDFTAFIEKQFEAEKFIAHCEDDQPRVLLQ--HAA 178

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             + +  ILIGPEG +  EE     +  F +P+SLG   LR++TAA+ A   +  +
Sbjct: 179 TAVADTLILIGPEGDFSPEEIRLALTNKF-SPVSLGSNRLRTETAAIVACHTINLL 233


>gi|329904946|ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547805|gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 242

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R     PL I        +  H++  V+R++ G  + LFNG   E+++ +S + K  R
Sbjct: 1   MPRFHCPLPLAIGDILVLPDNVAHHI-QVIRLQAGSMVTLFNGDGNEYVATLSVLEKK-R 58

Query: 67  FKVEYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             VE +    RS      +    +  + +++D++I+K+VE+G   I+P+  +        
Sbjct: 59  VTVEIKTCTERSVELPYAITLAQALPEASKMDWIIEKAVELGAAGIQPLSAQRCVVRLSA 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +         +   +SA+EQ     L  + P +     +   D + +I+        + S
Sbjct: 119 ERAEKRQLHWQGIIVSASEQSGRNRLAQLAPVSDFSRWIAQQDIHKRILLTPRA---DQS 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L           V +LIGPEGG   +E+    +   +  LS+GPR+LR++T
Sbjct: 176 LADWARHQPPQAVTLLIGPEGGLSDDEENLAIAHGAI-ALSMGPRVLRTET 225


>gi|189467796|ref|ZP_03016581.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM
           17393]
 gi|189436060|gb|EDV05045.1| hypothetical protein BACINT_04188 [Bacteroides intestinalis DSM
           17393]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I+T+ +   ++  +   VLR+  GD I L +GK   + ++IS    K     + E   + 
Sbjct: 9   IQTRAELPEEEAQHCIRVLRLNIGDQITLTDGKGYFYRAEISAATNKRCMVNILETIYQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++     ++R+    +SA
Sbjct: 69  PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKIERISKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     +       Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFIAQ-PFKGQKFIAHCYEGEKPLLKDV--LRKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      F TP+SLG   LR++TAA+ A  ++ 
Sbjct: 186 GPEGDFSEEEVQKAIENGF-TPISLGKSRLRTETAALVACHILN 228


>gi|225027417|ref|ZP_03716609.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353]
 gi|224955244|gb|EEG36453.1| hypothetical protein EUBHAL_01673 [Eubacterium hallii DSM 3353]
          Length = 248

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 110/246 (44%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKS 64
           + + F+      + +         +++ +VLRMK+G+ + L    K  E++  I  +   
Sbjct: 1   MYQFFIQPDSIKEEEIWIADPQDVNHIRNVLRMKKGEKVSLCCEAKGKEYICSIEEIESD 60

Query: 65  IR--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120
           I     ++    S+     +       K+++++ +IQK+VE+G+  I P+ T+       
Sbjct: 61  IVKAAIIDINGESRELPVKITLFQGLPKSDKMELIIQKAVELGVAEIVPMATKRAVVKLD 120

Query: 121 ----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSE 175
                  + R      SAA+Q     +P + P  + +  ++     +  ++  ++  G  
Sbjct: 121 AKKAAKKVQRWNEIAKSAAKQSKRGLIPEVKPVMSFKEAVEYGKSMDMLLIPYEDAKGIA 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +S E +  +    ++ I IGPEGG+  EE           P++LG RILR++TA +  ++
Sbjct: 181 HSREVVETVKDKKSLGIYIGPEGGFPEEEVSLAMKAG-AEPVTLGHRILRTETAGMTLLS 239

Query: 236 LVQAIC 241
           ++  + 
Sbjct: 240 ILMFML 245


>gi|332288757|ref|YP_004419609.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis
           UMN179]
 gi|330431653|gb|AEC16712.1| 16S ribosomal RNA methyltransferase RsmE [Gallibacterium anatis
           UMN179]
          Length = 210

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLD 95
           MK G+ + LF+G +  + + I+ + K         +    ++S +      +  +  R++
Sbjct: 1   MKVGEALELFDGSNHIYPAVITEISKKQITVALQNAIFDDRESPLNIHLGQVISRGERME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           + IQKSVE+G+  I P+ +         +     + + +   I+A EQC    +P I P 
Sbjct: 61  FTIQKSVELGVKTITPLWSERCGVKLDAERMEKKIQQWQKIAIAACEQCGRNIIPEIRPL 120

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             L+      D   ++        S   L           V +LIG EGG   +E E   
Sbjct: 121 MKLQDWCAENDGMLKLNLHPRASQSIKQLPP----PPAAGVRLLIGSEGGLSEQEIEQTV 176

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F T + LG R+LR++TA++ A++ +Q   GD
Sbjct: 177 QQGF-TEVLLGKRVLRTETASLVAISALQICFGD 209


>gi|37523950|ref|NP_927327.1| hypothetical protein gll4381 [Gloeobacter violaceus PCC 7421]
 gi|35214956|dbj|BAC92322.1| gll4381 [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 15/239 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLF+D         +    Q HYL  VLR+++G + ++ +G    W + +   G ++R  
Sbjct: 6   RLFLDPVQFSGDTARLDPAQSHYLRQVLRLRDGASCIVGDGLGNTWQATL--AGDTVRLG 63

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
                R+      V    +  K +R D+++QKS E+G   I P++   +  Q       R
Sbjct: 64  -SLLPRTGELPLPVTIACAVPKGDRWDWLLQKSTELGADRIVPLVCERSVVQPDAKRHKR 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +     AAEQ +   LP + PP      L++     +++     C +      L     
Sbjct: 123 WQAIVREAAEQSERAVLPVVEPPALFGMFLRHPARGTRLI-----CTARGVRPPLLNYLP 177

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
              + +L GPEGG+   E        +    SLG RILR++TA + A+  + A    WY
Sbjct: 178 AAALTLLFGPEGGFSETEVAAATDAGY-QVCSLGSRILRTETAPLLALGWIAA----WY 231


>gi|150008444|ref|YP_001303187.1| 16S ribosomal RNA methyltransferase RsmE [Parabacteroides
           distasonis ATCC 8503]
 gi|255014179|ref|ZP_05286305.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. 2_1_7]
 gi|256841572|ref|ZP_05547079.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262383279|ref|ZP_06076415.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298376306|ref|ZP_06986262.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19]
 gi|149936868|gb|ABR43565.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737415|gb|EEU50742.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262294177|gb|EEY82109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298267343|gb|EFI09000.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_19]
          Length = 232

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 10/237 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +      I  + +   ++  +   VLR+ EGD I+L +G+   + + IS    K  
Sbjct: 1   MQIFYTP---DIAIKPELPEEEAGHCIRVLRLGEGDEIVLTDGQGSFYKAAISRAHPKHC 57

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              + E   +      ++    +P K  +R+++ ++K+ E+G+ AI  +  R+++     
Sbjct: 58  EVTLLESWKQPDLWNFNLHIAIAPTKNMDRMEWFVEKATEIGINAITCLNCRFSERKEIK 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+    +SA +Q    TLP +   T  +  +     + +   A    G +  L+  H 
Sbjct: 118 PIRLEKILVSAMKQSQKATLPALEGMTDFKKFVAT-PFDGRKFIAHCEEGEKPLLK--HT 174

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                N  ILIGPEG +  EE +      F  P+SLG   LR++TAA+ A   +  +
Sbjct: 175 YQPGENALILIGPEGDFSPEEIKLAQENGF-EPISLGESRLRTETAALVACHTIHVL 230


>gi|206890400|ref|YP_002249400.1| hypothetical protein THEYE_A1605 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206890475|ref|YP_002249450.1| hypothetical protein THEYE_A1657 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742338|gb|ACI21395.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742413|gb|ACI21470.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 236

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 9/235 (3%)

Query: 9   RLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           RL V           + S +   YL +VLR   GD + +FNGK   + +KI  +      
Sbjct: 5   RLCVQHCEFFPGKILELSNEDRKYLFNVLRCHPGDTLSIFNGKGKSFHAKIIDL--KTIE 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDR 126
            ++ +         +    + +K  ++D +IQK+ E+G+  I P ++          + R
Sbjct: 63  ILQEEELHTEDVFSITLCQALLKGEKMDMIIQKATELGVKKIIPFVSDRCIVRHTRKIGR 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                  A+EQ     +P I        L+KN D+   I+F ++       ++ +  + H
Sbjct: 123 WEKIAKEASEQSHRSIVPEISNVINFSELIKNIDNG--ILFWEKATS--PLIQTISEVNH 178

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             N+ +LIGPEGG+  EE      +  +   SLG RIL+++TA++ ++ALV  + 
Sbjct: 179 DKNIFLLIGPEGGFSQEEVSQAEKMN-IKTASLGKRILKAETASIVSVALVSFLL 232


>gi|327468704|gb|EGF14183.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 250

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++   G+  
Sbjct: 1   MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLIFDDGMKRLARVLDPGQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK  E+G  AI        V     + 
Sbjct: 59  LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P I         L       +I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKVDFLAALTDFDRIIVAYEESAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG   +E +       ++   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAISA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|224538561|ref|ZP_03679100.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519829|gb|EEF88934.1| hypothetical protein BACCELL_03455 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 244

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 12/233 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68
            +      I+T+ +   ++  +   VLR+  GD I L +GK   + ++IS    K     
Sbjct: 16  FYTP---DIQTRAELPEEEAQHCVRVLRLNIGDQITLTDGKGNFYRAEISAATNKRCMVN 72

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           + E   +       +    +P K  +R ++  +K+ E+G   +  +  R+++      +R
Sbjct: 73  ILETIYQEPLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTER 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIA 185
           +    +SA +Q     LP +   T     +   +     I    E  G +  L+ +    
Sbjct: 133 ISKILVSAIKQSLKARLPQLNEMTDFNKFITQPFKGQKFIAHCYE--GEKPLLKDV--FR 188

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              +  +LIGPEG +  +E +      F TP+SLG   LR++TAA+ A   + 
Sbjct: 189 KGEDALVLIGPEGDFSEKEVQKAIENGF-TPISLGKSRLRTETAALVACHTLN 240


>gi|315640054|ref|ZP_07895179.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315484182|gb|EFU74653.1| RsmE family RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 257

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 101/246 (41%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F++        + + +G+ +H++  V+RM+ G+++ L    D    ++I  V    
Sbjct: 1   MQRYFLNESYNESVHEYEVTGEPFHHMIRVMRMEAGNHVYLVFANDMSLEAEIREVKADA 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
                V  +   +     V       K ++L++++QK  E+G            ++    
Sbjct: 61  VMLKPVAIEQLQRELPIKVTIASGFPKGDKLEWIVQKGTELGAAQFLAYPAKTSIVKWDP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-- 175
           +      +R++     AAEQ      P +    T   LL   +    ++ A E    +  
Sbjct: 121 KKRQKKQERLQKIAQEAAEQSHRQVCPTVELFATQSDLLAAMETADCVLVAYEESAKKGE 180

Query: 176 --NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
               ++    +A   ++ +L GPEGG+  EE E   +   +    LGPRILR++TA +  
Sbjct: 181 HAQLVQTFRKVAPGQHLMVLFGPEGGFLPEEIERFVAAGAIC-CGLGPRILRTETAPLYV 239

Query: 234 MALVQA 239
           +     
Sbjct: 240 LGAASY 245


>gi|225010758|ref|ZP_03701227.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-3C]
 gi|225005129|gb|EEG43082.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-3C]
          Length = 237

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 5/232 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFK 68
            +             S ++  +   VLR K GD I L NGK      +IS   GK+++  
Sbjct: 4   FYAPCFTAEDNSVALSQEESKHATKVLRKKTGDLIHLTNGKGLMAQGEISDTAGKTVQVS 63

Query: 69  VEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +        K   +    +P K  +R ++ ++K+ E+G+ +I P+I   ++      +R 
Sbjct: 64  LIEIHLQTPKPYSLDLYVAPTKMNDRYEWFLEKATEIGLSSITPIICDQSERKVIKAERY 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               +SA +Q     LP ++P  +L+  L       ++    E    + +L  L      
Sbjct: 124 EKVLLSAMKQSLQAYLPLLHPAISLKKCLDQDISGEKLFAHCEADKMKTALNSLD--LKN 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             ++I IGPEG +   E +         P+S G   LR++TAA+ A A V A
Sbjct: 182 KKLSIFIGPEGDFSLSEIKKAIEKG-CKPVSFGNTRLRTETAALYACASVAA 232


>gi|29349736|ref|NP_813239.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253569899|ref|ZP_04847308.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384009|ref|ZP_06993570.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14]
 gi|29341646|gb|AAO79433.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840280|gb|EES68362.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263613|gb|EFI06476.1| RNA methyltransferase, RsmE family [Bacteroides sp. 1_1_14]
          Length = 232

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 7/226 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKV-EYQSRS 75
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+    K     + E   + 
Sbjct: 9   IQKNYELPEEEAQHCTRVLRLGIGDEITLTDGKGHFYKAEITVATNKRCLVAIKETIFQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R +++ +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILISA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T  +  +   +   Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMTDFDKFIAQ-EFQGQKFIAHCYEGEKPQLKNV--LKAGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEG +  EE +      F TP+SLG   LR++TAA+ A   +  +
Sbjct: 186 GPEGDFSEEEVKKAIECGF-TPISLGKSRLRTETAALVACHTMNLL 230


>gi|6580788|gb|AAF18294.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 256

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           L RL+V+  L ++        Q HYL  V+R K G  ++LF+   GEWL ++   G K +
Sbjct: 12  LPRLYVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHL 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           + K+ +    +    D+  + +PIK  R+D++ +K+ E+G+  I PVIT+ T     N++
Sbjct: 72  QLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLE 131

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R++ + + AAEQC   +L  +    +L  LL  W  +  + FADET G E  +E L    
Sbjct: 132 RLQAHIVEAAEQCGRTSLSEVTEACSLISLLAEWPEDRALFFADET-GGEPMIEALSKRK 190

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                AIL+GPEGG+  +E++ ++++    P+SLGPRILR
Sbjct: 191 MA--AAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILR 228


>gi|325290539|ref|YP_004266720.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965940|gb|ADY56719.1| Ribosomal RNA small subunit methyltransferase E [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 245

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R  +      +      G++ H+L  VLR+  G+ IL F+     W   I  + K   
Sbjct: 1   MHRFRISS--IDQDYFLIDGEELHHLTRVLRLGPGEEILGFDHSGRLWRGAIREINKEQA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           +   +  +      +  V  I    K  +++ +IQK  E+GM  + P+ TR +       
Sbjct: 59  VCSVIRAEIPETEAKVKVYLIVGLSKGEKMELVIQKGTELGMTGLIPLRTRRSVMKLEGT 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +DR R     A +QC  +  P + P    + L      + Q +   E   + +  
Sbjct: 119 KAEERVDRWRKIAGEAVKQCGRVIQPAVAPVLDWQDLPAYLPADTQWLIPFEGEKTVSLK 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L +      +A++IGPEGG+  +E            +SLG RILR++TAA+AA+ +V 
Sbjct: 179 ACLKSFDPSLPMALIIGPEGGFEPQEVLWAKEKLGAKSISLGSRILRAETAAIAALTIVL 238

Query: 239 AICGD 243
           A  GD
Sbjct: 239 AFYGD 243


>gi|224500510|ref|ZP_03668859.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes Finland
           1988]
          Length = 255

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTSELENDNDTLAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
                V++         ++       K ++L+ +IQKS E+G          R V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDFVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   + +  L          LGPRILR++TA +  
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEK-ELLLLEEANAKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|270293092|ref|ZP_06199303.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143]
 gi|270279071|gb|EFA24917.1| RNA methyltransferase, RsmE family [Streptococcus sp. M143]
          Length = 251

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 12/248 (4%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           + +++++ FV          +   +   ++  V+R+KEGD + L      + L+++  V 
Sbjct: 1   MEANMQQYFVKGSPISPVTIE-DKETSKHMFQVMRLKEGDEVTLVFEDGIKRLARVLNVE 59

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
                 +E  + +      V       K ++L+++ QK  E+G   I        V    
Sbjct: 60  ARQFELLEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWD 119

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     ++++    + AAEQ     +P I         L   D    IV A E    E 
Sbjct: 120 GKKLGKKVEKLEKIALGAAEQSKRNLVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEG 179

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                L+ +  +A    +  + GPEGG    E E+  +   V    LGPRILR++TA + 
Sbjct: 180 EASALLQAVTGLATGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLY 238

Query: 233 AMALVQAI 240
           A++ +  +
Sbjct: 239 ALSALSVL 246


>gi|319796621|ref|YP_004158261.1| hypothetical protein Varpa_5998 [Variovorax paradoxus EPS]
 gi|315599084|gb|ADU40150.1| protein of unknown function DUF558 [Variovorax paradoxus EPS]
          Length = 246

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 16/242 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R     PL              +   VLRM+ GD + LF+G  GE+ + I  +G+S  
Sbjct: 1   MPRFHCSVPLSPGAAFALPPGAARH-VQVLRMQPGDALTLFDGAGGEYEATIERMGRSDV 59

Query: 67  FKVEYQSRSQTKQSD--VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
                      +++   V          R+D++++K+ E+G+ +I+P+ T +       +
Sbjct: 60  SVTVGVHHPVEREATRAVHLAVGMPANERMDWLVEKATELGVASIQPLATAHGVLRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE----FLLKNWDHNCQIVFADETCGS 174
                        I+A EQC    +P I+P  +      ++    D      F       
Sbjct: 120 RAEKKRAHWEAIAIAACEQCGRNRVPVIHPVRSFSGNSGWIDAQQDEGATARFVLSLAEG 179

Query: 175 ENSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              +E   A       +V +L GPEGG  + E++   +  F  P++LG R+LR++TAA+ 
Sbjct: 180 TQGIEAASAAHAPDNRDVRVLSGPEGGLSAAEEQEAIARGFA-PVTLGLRVLRAETAALV 238

Query: 233 AM 234
           A+
Sbjct: 239 AL 240


>gi|330813642|ref|YP_004357881.1| ribosomal RNA small subunit methyltransferase E [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486737|gb|AEA81142.1| ribosomal RNA small subunit methyltransferase E [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 238

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 7   LK---RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVG 62
           ++   R+F+   L    + +   DQ HY+++V+R+K GD +LLFNG DGE+L K++    
Sbjct: 1   MQKKIRIFLSERLEENNKIELGKDQSHYISNVMRLKSGDELLLFNGIDGEFLGKVAGSEK 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           K    +V  + R Q+K S++   F P+K  RLD++IQK  E+G+ +  PVI+ +T   + 
Sbjct: 61  KQTIIQVHAKQRDQSKPSNISLAFCPLKGQRLDFLIQKCTEVGLKSFIPVISDHTIVRNV 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N +R++   I ++EQ D L +P +     LE  L        ++F D +  + +  + + 
Sbjct: 121 NENRLKKIIIESSEQSDQLHIPQVLSALNLEEFLHFLKKEDVVLFGDISSKNNDLTQLIE 180

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                 N  + IGPEG +  +E+E +         SLG  ILRS+TAA+A + L+  + 
Sbjct: 181 D--KSKNYILFIGPEGDFSPKEREIILKNVKFKSFSLGKNILRSETAAIAGLVLLNFLL 237


>gi|326404264|ref|YP_004284346.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301]
 gi|325051126|dbj|BAJ81464.1| hypothetical protein ACMV_21170 [Acidiphilium multivorum AIU301]
          Length = 226

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRS 75
                   S  Q HYL  V+R + GD +L+FN   GE+ + I  + +     V   ++R+
Sbjct: 2   SPGATLATSAAQAHYLGAVMRRRAGDRLLVFNAGSGEFAATIGALDRRAATLVLGARTRA 61

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135
              + D    F+P++ +  + +++K+ E+G+  + PV+T  TQ      DR+      AA
Sbjct: 62  PEPEPDCWLCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARLRADRLAAIATEAA 121

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           EQ + LT+P I  P  L   L ++  + ++  A       ++   L     +   A+L+G
Sbjct: 122 EQSERLTIPDIAEPAPLAAFLASFPPSRRLFVA----AERHAAPPLSPADPLQPHALLVG 177

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           PEGG   EE + +    FV+P++LGPRILR++TAA+A +A + A
Sbjct: 178 PEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLARLLA 221


>gi|88802426|ref|ZP_01117953.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P]
 gi|88781284|gb|EAR12462.1| hypothetical protein PI23P_07550 [Polaribacter irgensii 23-P]
          Length = 235

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 7   LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++ LF +  + I T +      +  ++  VLR   GD + + NGK   +  +I +   K 
Sbjct: 1   MQ-LFYNSEIAINTTEITFDKIESKHIVRVLRKTTGDILKITNGKGYLFDVEICFANDKK 59

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              K+   + + +     +    +P K  +R+++ ++K+ E+G+  I P+I   ++  + 
Sbjct: 60  CTAKIIKAEEKPKPWNYSLHIAIAPTKNNDRIEWFLEKATEIGIDEITPIICSNSERRYV 119

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            +DR      +A +Q    TLP I  P      +K  D +  I  A      +N ++ + 
Sbjct: 120 KIDRFEKIIQAAMKQSLKCTLPKINEPIKFNDFIKQ-DFDGTICIAHCEDQEKNFIKSV- 177

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +     + ILIGPEG +  +E        F  P+SLG   LR++TA + A+ +V  I
Sbjct: 178 -VQTSEKITILIGPEGDFSLDEIAKALDKKF-KPISLGKSRLRTETAGIVAVNIVSFI 233


>gi|332358563|gb|EGJ36387.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 250

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 14/245 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              VE  + +      V       K ++L+++ QK+ E+G  AI        V     + 
Sbjct: 59  LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGASAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SE 175
                +++      AAEQ     +P +         L        IV A E       S 
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFEKKSDFLNQLAQFGTIVVAYEESAKAGESA 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG   EE         V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAI 240
            V  +
Sbjct: 238 AVSVL 242


>gi|299783149|gb|ADJ41147.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 244

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDXATAEV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +          +V       K   + + ++QK+ E+G   I    +  +      Q 
Sbjct: 61  KVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               ++R++    +AAEQ     +P +     L+ LL  +  + ++V  +E+        
Sbjct: 121 QGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGERAA 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  MA 
Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239

Query: 237 VQAIC 241
           V    
Sbjct: 240 VSYHF 244


>gi|255007829|ref|ZP_05279955.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis
           3_1_12]
 gi|313145535|ref|ZP_07807728.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134302|gb|EFR51662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 229

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS    K     + E   + 
Sbjct: 9   IQTNAELPEEEAQHCVRVLRLTAGDEITLTDGKGNFYRAEISAATNKRCLVNIKETIHQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K  +R +++ +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWEGHLHIAMAPTKNMDRNEWLAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     ++  D + Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPRLNEMTDFNSFIEK-DFSGQKFIAHCYEGEKPLLKDV--LKKGEDTLVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      F+ P+SLG   LR++TAA+ A   + 
Sbjct: 186 GPEGDFSEEEVKKAIEKGFI-PISLGKSRLRTETAALVACHTMN 228


>gi|126660243|ref|ZP_01731359.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110]
 gi|126618482|gb|EAZ89235.1| hypothetical protein CY0110_06779 [Cyanothece sp. CCY0110]
          Length = 241

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R+ ++           + +Q HYL +VLR+KE    ++ +G++  +++KI+     I   
Sbjct: 4   RIIIEPTQKQGDMITLTPEQKHYLKNVLRLKEDSQFIVVDGQNNTYIAKINDDNGQI--- 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           +E  +       +V  + +  K    D +I+   E+G+  I PVI++ T  + + + ++R
Sbjct: 61  IEQLNEQTELPINVTLMIALPKGKGFDEVIRSCTELGINTIIPVISQRTLLKPSSHKLER 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     A EQ +   +P I  P +    LK      Q  +   T      L        
Sbjct: 121 WRKIVKEATEQSERQLVPNILEPISFSEALKKVKQTNQNYYICVTRKKAKHLLTYLLETT 180

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
             ++ I  G EGG+  +E     +  F+ P++LGPRILR+ TA +  ++LV ++   ++
Sbjct: 181 TNSITIATGCEGGWTEKEINEAINSGFI-PVTLGPRILRAVTAPLVTLSLVASVTEKYH 238


>gi|168334726|ref|ZP_02692858.1| hypothetical protein Epulo_06900 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 256

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 10/239 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + + FVD               +H++ +V+R K GD +L+ + ++G +   ++ +  + I
Sbjct: 12  MPKYFVDKSNIKDATIVIEDRNFHHIKNVMRAKIGDQLLVGDKENGMYKCFVAEISANFI 71

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
              +     + T+ +    +F+P IK ++++++IQK+VE+G+  I P+ T++        
Sbjct: 72  TANIVEVFAADTEPAVDIVLFAPLIKGDKMEWVIQKAVEIGIAKIIPIYTQHCVVKLESE 131

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R      SAA+Q        +  P      ++  D     +          +
Sbjct: 132 KKIASKVERWNKIAESAAKQSGRGITVAVAEPMKFADAMEFADAALDAIAIPYEKEDTQT 191

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +K+       ++ I +GPEGG+ +EE            ++LG RILRS+TA++ A AL
Sbjct: 192 FKKMLRENQFTSLGIFVGPEGGFAAEEIAIAEKFG-AMVVTLGKRILRSETASIVATAL 249


>gi|330815513|ref|YP_004359218.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3]
 gi|327367906|gb|AEA59262.1| hypothetical protein bgla_1g05690 [Burkholderia gladioli BSR3]
          Length = 253

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 17/236 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           S + R FVD PL  +       +   +   VLR++ GD + LF+G  G++ +++  +GK 
Sbjct: 7   SAVPRFFVDVPLADQASIVLPAEVARH-VQVLRLEPGDALTLFDGSGGQYRAELVEIGKR 65

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                 + +++R       +         +++D++I+K+VE+G+  + P+ T        
Sbjct: 66  TAVARTLAFEARELETPYRITLAQGIAGGDKMDWLIEKAVELGVAGVAPLSTSRGVVRLS 125

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETC 172
            +     +   +    +A EQC    +P +   +     L       +   +++ +    
Sbjct: 126 GERADKRVAHWQGVVRAACEQCGRNRVPAVAAVSDYAAWLAALPSPVEGEVRLMLSPRAS 185

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +  +L   A    + +LIGPEGG    E++      F   + LG R+LR++T
Sbjct: 186 ---IAFAELPKQAPTGEIRLLIGPEGGLSPAEEDAARECGFQAIV-LGARVLRTET 237


>gi|222112634|ref|YP_002554898.1| 16S ribosomal RNA methyltransferase rsme [Acidovorax ebreus TPSY]
 gi|221732078|gb|ACM34898.1| protein of unknown function DUF558 [Acidovorax ebreus TPSY]
          Length = 242

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R     PL    Q         +   VLR++ GD + LFNG+ GEW + ++++G+S +
Sbjct: 1   MPRFHCPLPLAADAQLTLPPTAARH-VQVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDV 59

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + +V   S  + + +  V  +       R+D++++K+ E+G  +I+P+    +      +
Sbjct: 60  QVQVGSHSAVEREAARAVHLVVGMPANERMDWLVEKATELGAASIQPIAAARSVLKLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
                    +   ++A EQC    +P ++ P +L   L+    +     A     S    
Sbjct: 120 RAAKRQQHWQAIAVAACEQCGRNRVPSVHAPLSLADWLRQPPADALAPDAARLLLSLRSG 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           S     A A    V +L GPEGG  ++E++   +  F  P SLG R+LR++TA+V
Sbjct: 180 SRPLREAAAEAGAVWVLHGPEGGLTAQEEDAALAQGFA-PASLGARVLRAETASV 233


>gi|307707102|ref|ZP_07643899.1| RNA methyltransferase family protein [Streptococcus mitis SK321]
 gi|307617628|gb|EFN96798.1| RNA methyltransferase family protein [Streptococcus mitis SK321]
          Length = 247

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGVKRLARVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQILAFPSDWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIQLFENKADFLAQLDQFDSIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGGKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|218129752|ref|ZP_03458556.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697]
 gi|317475901|ref|ZP_07935157.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987862|gb|EEC54187.1| hypothetical protein BACEGG_01331 [Bacteroides eggerthii DSM 20697]
 gi|316907934|gb|EFV29632.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 232

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I++  +   ++  +   VLR++ GD + L +GK   + ++IS            ++  QT
Sbjct: 9   IQSHAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNLLETIPQT 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERIAKILISA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     +     N +   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFISQ-PFNGRKFIAHCYEGDKPLLKDI--VRKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      F  P+SLG   LR++TAA+ A  ++ 
Sbjct: 186 GPEGDFSEEEVKKAIENGF-EPISLGRSRLRTETAALVACHILN 228


>gi|308272138|emb|CBX28745.1| hypothetical protein N47_L13430 [uncultured Desulfobacterium sp.]
          Length = 259

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++  ++D            G    ++ +VLR+K GD+I LF+    ++ ++I  V  +  
Sbjct: 1   MRLFYIDQSEIASQNPAIKGSDARHIINVLRLKPGDHIELFDESGIKYKARIVAVSSARV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                   +QT +S ++ I +   +K  ++D +I++  E+G+    P I+  +      +
Sbjct: 61  EVSVVGQSNQTVESFLEIIVAQSFLKEAKMDNLIRQLTELGITKWIPFISERSVSRPDDK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R  +    AA+QC       I    + + LL++       +   E   +   +
Sbjct: 121 RLLNRSKRWESIAKEAAKQCKRAKTTIIEKTVSFKELLESKQEFDLKIIFWENEKNLLDI 180

Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           + L A     I  + I++GPEGG+   E E      F+T   LGPRILR++TA+V+A  L
Sbjct: 181 KNLTATHQKDINKILIILGPEGGFTISEIEKAKESGFLTA-GLGPRILRAETASVSACTL 239

Query: 237 VQAICGD 243
           +Q + GD
Sbjct: 240 IQFLFGD 246


>gi|322386664|ref|ZP_08060289.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269337|gb|EFX52272.1| RsmE family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 247

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 20/249 (8%)

Query: 7   LKRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ F+      PL +K       D   ++  V+R+KEGD + L      + L+ +    
Sbjct: 1   MQQYFIKGNPQSPLVVK-----DKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLAHVLEPS 55

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
           +     +E  + +      V       K ++L+++ QK+ E+G  AI        V    
Sbjct: 56  QQSLEILEELADNTELPVQVTIASGFPKGDKLEFITQKATELGANAIWAFPADWSVAKWD 115

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           ++      +++      AAEQ     +P +    T    L       +IV A E    E 
Sbjct: 116 SKKLAKKSEKLEKIAQGAAEQSKRNMIPEVRLFDTKADFLAVLADFDRIVVAYEESAKEG 175

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                ++ +  +     +  + GPEGG   +E         V+   LGPRILR++TA + 
Sbjct: 176 ETAALVQAVKGLDKGDKLLFIFGPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLY 234

Query: 233 AMALVQAIC 241
           A+  V  + 
Sbjct: 235 ALTAVSVML 243


>gi|86134044|ref|ZP_01052626.1| protein of unknown function (DUF558) [Polaribacter sp. MED152]
 gi|85820907|gb|EAQ42054.1| protein of unknown function (DUF558) [Polaribacter sp. MED152]
          Length = 235

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 12/239 (5%)

Query: 7   LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++ LF +  L  +T Q      +  ++  VLR KEGD + + NGK   + ++I++   K 
Sbjct: 1   MQ-LFYNAELIKETTQIIFDKIESRHIVKVLRKKEGDILKITNGKSYLFDAEITFASDKK 59

Query: 65  IRFKVEYQSRS-QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              +++  +   +     +    +P K  +R ++ ++K+ E+G+  I P+I   ++    
Sbjct: 60  CIVQIKSATEKLKPWPYYLHIAIAPTKNNDRTEWFLEKATEIGIDEITPIICSNSERRVV 119

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R      SA +Q    TLP +         ++      + +   E    +NSL+ + 
Sbjct: 120 KLERFEKIIQSAMKQSLKFTLPKLNKAIKFNEFIQQDIPGLKCIAHCEDQ-EKNSLKLV- 177

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA---MALVQ 238
              +   + ILIGPEG +  +E +   +  F TP+SLG   LR++TAA+ A   ++LVQ
Sbjct: 178 -AKNTDKITILIGPEGDFSVDEIKKALNANF-TPISLGESRLRTETAALVAVNTISLVQ 234


>gi|285018976|ref|YP_003376687.1| hypothetical protein XALc_2213 [Xanthomonas albilineans GPE PC73]
 gi|283474194|emb|CBA16695.1| hypothetical protein XALc_2213 [Xanthomonas albilineans]
          Length = 243

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            L R  VD PL    +     +   +L  VLR++EGD  +LFNG   ++ +++   GK  
Sbjct: 2   RLTRCHVDLPLHTGAEVALPEEVAGHLLRVLRLREGDRCVLFNGNGCDYDAELLPTGKRG 61

Query: 66  RFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
                  +R    +S +    +    +  ++D ++QK+ E+G+ AI P+    T+     
Sbjct: 62  ASARIGVARPVDNESSLAITLLQGVARGEKMDLILQKATELGVSAIVPIWAERTEVKLDA 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             T   +   R+  +SA EQ     +P +  P    +      D  C+++        E 
Sbjct: 122 QRTDKRVAHWRSVVVSACEQSGRARVPSLSAPLALADAARAAADSPCRLILDP---QGEQ 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L  L  I +   + I IGPEGG+   ++ TL S  F+  L LGPRILR++TA++AA+A 
Sbjct: 179 RLRTLDFIGNA--ITIAIGPEGGWSPRDRTTLESAGFL-GLRLGPRILRTETASLAAIAA 235

Query: 237 VQAICGD 243
           +QA  GD
Sbjct: 236 LQAHGGD 242


>gi|319937482|ref|ZP_08011887.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1]
 gi|319807322|gb|EFW03931.1| hypothetical protein HMPREF9488_02723 [Coprobacillus sp. 29_1]
          Length = 244

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D       + +     + ++  V+R   GD ++        ++ +I  +   + 
Sbjct: 1   MQRYFIDEKCLKDEEIRIDAYNHKHMQRVMRYHNGDQVICILPSAKTYIYEIIDIETGLL 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            +VE    +     +V  I+   K+++ ++++QK+ E+G+  I P +++ +      +  
Sbjct: 61  KRVEELHENHELDVNVTLIYGLPKSDKFEWVLQKATELGVKRIVPFLSKRSIIKTDAKTF 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +R +     A+EQ     +P +    T++  L  +  +  +V  +E          
Sbjct: 121 SKKEERYQRILKEASEQSYRQMIPELTQLITIKD-LSQYLSDINLVAYEEASKRGEECCF 179

Query: 181 LHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             A+      + I++GPEGG+   E E + +L  +   SLG RILRS+TA +  ++++  
Sbjct: 180 ASALKQNYQTLTIIVGPEGGFDQSEIEQMKALG-IQECSLGKRILRSETAPLYMLSVIGY 238


>gi|299535791|ref|ZP_07049112.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1]
 gi|298728991|gb|EFI69545.1| hypothetical protein BFZC1_07198 [Lysinibacillus fusiformis ZC1]
          Length = 264

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           ++R F++  +      + SG+   ++  V+RMK+GDNI++   ++  ++  I  + G  +
Sbjct: 20  MQRYFIETAI---ENARISGEDARHIERVMRMKQGDNIVVV-AQNTAYICTIEGFEGDEV 75

Query: 66  RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +   Q+  S      V       K ++L+ + QK+ E+GM A+ P     +      +
Sbjct: 76  VIEATGQTIPSPELPIQVTVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDKK 135

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                 +R++     AAEQ     +P ++ P + + L++  D    +  ADE        
Sbjct: 136 KGAKKQERLQKIAKEAAEQAHRTHIPTVFEPISFKQLVQQIDQFDAVFIADEEDAKAEKR 195

Query: 178 ---LEKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
               EKL  +      ++ I+ GPEGG   +E E L      T +SLGPRILR++TA + 
Sbjct: 196 TRFAEKLKNVYDKKSKSMLIIFGPEGGISRQESEALLQAGAQT-MSLGPRILRAETAPLY 254

Query: 233 AMALVQAIC 241
           A++ +    
Sbjct: 255 ALSAISYEF 263


>gi|221069844|ref|ZP_03545949.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1]
 gi|220714867|gb|EED70235.1| protein of unknown function DUF558 [Comamonas testosteroni KF-1]
          Length = 246

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 121/249 (48%), Gaps = 24/249 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60
           + R     PL +  +         +   VLR + GD I LF G+       GE+ + I+ 
Sbjct: 1   MPRYHCPIPLHLGDELDLPAGAARH-VQVLRHQPGDIITLFEGQTGNGFTGGEFQATITR 59

Query: 61  VGKS-IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           +G+S +  +V+  S ++ + +  V  +       R+D++++K+ E+G+ +I+PV+   + 
Sbjct: 60  MGRSDVGVRVDSHSPAEREAARAVHLVVGMPANERMDWLVEKATELGVASIQPVMAARSV 119

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFA 168
                      ++R ++  +SA EQC    +P I+ P +L   L++         ++V +
Sbjct: 120 LKLKGDRADKKIERWQSIAVSACEQCGRNQVPVIHAPLSLADWLRSKQAPAADAARLVLS 179

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    +   +A A    V +L GPEGG  ++E++      +  P SLG R+LR++T
Sbjct: 180 LREGNQPLRIAAGNAHA----VWVLHGPEGGLTAQEEDWALEQGW-KPASLGSRVLRAET 234

Query: 229 AAVAAMALV 237
           A+VA ++L+
Sbjct: 235 ASVATLSLL 243


>gi|329725434|gb|EGG61917.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU144]
 gi|329735250|gb|EGG71542.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU045]
 gi|329737441|gb|EGG73695.1| RNA methyltransferase, RsmE family [Staphylococcus epidermidis
           VCU028]
          Length = 245

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK-VEYQSRSQTKQSDVQ 83
            + YH++ +V+R KEG NI++    +  +  KI  +  +SI  K VE Q  +     ++ 
Sbjct: 16  KEDYHHIVNVMRYKEGQNIIVTFSDENVFKCKIISINDQSIEIKLVEKQQINTELPQNIT 75

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQ 137
                IK ++ ++MIQK+ EMG      V    +            + R +     AAEQ
Sbjct: 76  ICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNDSKVEKKLSRWQKIIKEAAEQ 135

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAIL 193
              LT+P I   + L+ +         ++ A E       L    + +        V I+
Sbjct: 136 SYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHGELSQFKQTIKQFKTQDRVLII 195

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            GPEGG    E      +   T + LGPRILR++TA + A++ V   
Sbjct: 196 FGPEGGLSDSEISLFGDVS--TIVGLGPRILRAETAPLYALSAVSYE 240


>gi|313203702|ref|YP_004042359.1| hypothetical protein Palpr_1227 [Paludibacter propionicigenes WB4]
 gi|312443018|gb|ADQ79374.1| protein of unknown function DUF558 [Paludibacter propionicigenes
           WB4]
          Length = 233

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +V   L          ++  +   VLRM+ GD I + +G  G + + IS    K   F+
Sbjct: 4   FYVPN-LSAG--YVLPEEESKHAVKVLRMQVGDAISVVDGVGGFYNALISNPHPKHCEFE 60

Query: 69  VEYQSRSQ-TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           ++        +   +    +P K   RL++ I+K+ E+G+  I P+I R+++      +R
Sbjct: 61  IKKTILEFGKRDYKIHIAIAPTKNIERLEWFIEKATEIGIDQITPIICRFSERKIVKAER 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    +SAA+Q      P + P  T + L+   + + + +     C  E+     + I  
Sbjct: 121 LEKIIVSAAKQSLKAYFPILNPLCTFDELINKHNASQKFIAH---CYEEDKKLLQNEIQK 177

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             +V ILIGPEG +  EE ++     F+ P+SLG   LR++TA V A 
Sbjct: 178 SSDVLILIGPEGDFSKEEVQSAILHDFI-PVSLGESRLRTETAGVVAC 224


>gi|114328853|ref|YP_746009.1| 16S ribosomal RNA methyltransferase RsmE [Granulibacter
           bethesdensis CGDNIH1]
 gi|114317027|gb|ABI63087.1| surface protein [Granulibacter bethesdensis CGDNIH1]
          Length = 250

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RL +D  L           + HYL  V+R   GD + LFN  DGEW + I  + +     
Sbjct: 16  RLHMDHALRGGEHLTLDTARAHYLGTVMRRGVGDALSLFNATDGEWRAVIERIDRKGATL 75

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q RS   +     +F+ +K    + ++QK+ E+G+  + PV+T  T     N  R+
Sbjct: 76  SLTEQIRSPVPEEGPWLVFALLKRTNTELVVQKATELGVSRLIPVMTTRTNAERINAARL 135

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               + AAEQC+ L++P +  P  L  LL++W  + ++  A E        +  HA    
Sbjct: 136 EAIAVEAAEQCERLSIPVLQAPQPLPALLRDWPEDRRLYAAIERS------DVAHARGVA 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              A+L GPEGG+  +E   L S   V P+SLG  +LR++TAA+A +AL+ A
Sbjct: 190 GPSALLTGPEGGFAEQELVMLRSHAHVIPVSLGRTVLRAETAAIAGLALLTA 241


>gi|16803510|ref|NP_464995.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           EGD-e]
 gi|47095422|ref|ZP_00233032.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224501590|ref|ZP_03669897.1| 16S rRNA m3U1498 methyltransferase [Listeria monocytogenes FSL
           R2-561]
 gi|254829771|ref|ZP_05234426.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           10403S]
 gi|254898364|ref|ZP_05258288.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           J0161]
 gi|254912144|ref|ZP_05262156.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936472|ref|ZP_05268169.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|5689042|dbj|BAA82792.1| orf29 [Listeria monocytogenes]
 gi|16410899|emb|CAC99548.1| lmo1470 [Listeria monocytogenes EGD-e]
 gi|47016243|gb|EAL07166.1| conserved hypothetical protein TIGR00046 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609065|gb|EEW21673.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293590116|gb|EFF98450.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 255

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 15/252 (5%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R FV   L         +G+ +H++A V+RMKE D + +        ++ I+ + +  
Sbjct: 1   MQRYFVTSELENDNDTLAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITAINEEE 60

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
                V++         ++       K ++L+ +IQKS E+G          R V+    
Sbjct: 61  VLLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R++     AAEQ     +P ++   + + L+    H   ++ A E    E  
Sbjct: 121 KKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFGHVHYDFVIAAYEESAREGE 180

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              L ++        +V  + GPEGG   + +  L          LGPRILR++TA +  
Sbjct: 181 DSALASLFQTMKPGQSVLCIFGPEGGISEK-ELLLLEEANAKLAGLGPRILRTETAPLYV 239

Query: 234 MALVQAICGDWY 245
           ++       D Y
Sbjct: 240 LSAASFYF-DLY 250


>gi|319945702|ref|ZP_08019953.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319748062|gb|EFW00305.1| RsmE family RNA methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 249

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGLASSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEARQL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  EIIEELTDNVELPIHVAIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D   +IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNFVPSITLFEKKADFLAQLDQFDRIVVAYEESAKEGESAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +  +     V  + GPEGG    E E+  +        LGPRILR++TA + A++ 
Sbjct: 180 LVQAVSGLEKGSKVLFIFGPEGGLSPAEIESFEAKGAALA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSVVT 243


>gi|306829961|ref|ZP_07463148.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427972|gb|EFM31065.1| RsmE family RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 247

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KEGD I L      + L+++  V     
Sbjct: 1   MQQYFVKGNATSPVTIE-DKETSKHMFQVMRLKEGDEITLVFDDGIKRLARVLDVETRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELADNVELPVQVTTASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++++    + AAEQ     +P +         L  +D    IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSVKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAA 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     V  + GPEGG    E ++  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIQAVSGLEKGSKVLFIFGPEGGLSPAEIKSFEAKGAVLA-GLGPRILRAETAPLYAVSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|124007911|ref|ZP_01692612.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123986673|gb|EAY26463.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 238

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GK 63
            L +LF   P     Q   S ++  +   VLRMK+ D + L +GK   +L+KI+     K
Sbjct: 3   KLSQLFY-SPQTTHQQAILSEEESRHCVKVLRMKKNDELHLTDGKGNLFLAKIAEPHHKK 61

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
            +   V    ++      +    +P K  +R+++ ++KSVE G+  I  V    ++    
Sbjct: 62  CVLDIVRTIEQTPAPLYHIHVAIAPTKNIDRIEWFVEKSVEFGIQQISFVQCNRSERKQV 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R++   +SA +Q     +P I    + +  + N   +     A    G    L+ + 
Sbjct: 122 KLPRIQKIALSAMKQSLKFFMPQINEMVSFKSFMANLTPDETRYVAHLNEGERVFLKDVA 181

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                    ILIGPEG +  +E     +  F   +SLG   LR++TA +AA  L+ 
Sbjct: 182 Q--KHQKYCILIGPEGDFTPDEVTLALNNEF-KAVSLGNSRLRTETAGIAACHLLN 234


>gi|260662210|ref|ZP_05863106.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
 gi|260553593|gb|EEX26485.1| RNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
          Length = 249

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +          +V       K   + + ++QK+ E+G   I    +  +      Q 
Sbjct: 61  KVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               ++R++    +AAEQ     +P +     L+ LL  +  + ++V  +E+        
Sbjct: 121 QGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTIFSFDHRVVAWEESAKQGERAA 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  MA 
Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239

Query: 237 VQAIC 241
           V    
Sbjct: 240 VSYHF 244


>gi|329114600|ref|ZP_08243359.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter
           pomorum DM001]
 gi|326696080|gb|EGE47762.1| Ribosomal RNA small subunit methyltransferase E [Acetobacter
           pomorum DM001]
          Length = 257

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 3   IHSHLKRLFVDFPLCIKT-----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57
             +HL RL+ + P  +           + DQ  YL  VLR K GD++ +FN K GEWL++
Sbjct: 6   ATAHLPRLY-NAPETLGDAQTGLTLPIAPDQARYLGTVLRKKTGDHVRIFNAKSGEWLAR 64

Query: 58  ISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
           I+ + K    F +E+Q RS T Q  +   F+ +K +  D  ++   E+G+    P+IT  
Sbjct: 65  ITEIRKDKGFFALEHQLRSPTPQPALVLAFALLKRDATDLALRMGTELGVTHFVPLITER 124

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           T     N DR+      A EQC+   +P I  P +    L +W    ++  A E   +  
Sbjct: 125 TNTHRINPDRLHAIATEATEQCERFDVPHIESPQSFTDFLASWPQEHRLFAAIERGENRA 184

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                L   AH  +   L+GPEGG    E + +     +TP+SLGP +LR+DTA  A +A
Sbjct: 185 IHTPALLPDAHAGD-GFLVGPEGGLSDRECQMMLKYSCITPISLGPLVLRADTAVAAGLA 243

Query: 236 LV 237
           L+
Sbjct: 244 LI 245


>gi|227824690|ref|ZP_03989522.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905189|gb|EEH91107.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 247

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF- 67
           R F+  P       + +G   H++ HVLRMK GD + + +      + KI+   K     
Sbjct: 6   RFFLGKPFA--DTLEVTGQDAHHMGHVLRMKVGDEVQIVSLDQIAAVMKITAFSKDAVTL 63

Query: 68  -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
             V     +      V       K ++++++IQK++E+G+  I+PV   +         T
Sbjct: 64  ETVRILEENHEPTVRVTLYQGLPKQDKMEWIIQKAIELGISEIQPVSMAHCVVRLDEGKT 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R +    +AA+Q     +P I  P  +   L + + + +++ A E     +    
Sbjct: 124 AKKLERWQKIAEAAAKQSKRDIVPVIKAPLPVALALTSCEADLKLM-AYEVEEEGSLRRT 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L       ++A+LIGPEGG   +E +   +  +   +SLGPRILR++T
Sbjct: 183 LQKTPDAKSIALLIGPEGGISGDEFDLAAAHDW-QSVSLGPRILRTET 229


>gi|213963907|ref|ZP_03392153.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno]
 gi|213953416|gb|EEB64752.1| RNA methyltransferase, RsmE family [Capnocytophaga sputigena Capno]
          Length = 241

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 9/239 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +        T      ++  ++  VLR K GD + + NGK   + +++ +   K  
Sbjct: 3   IQLFYHPALQLDSTNCFFDKEESQHIVKVLRKKVGDVLHITNGKGQLFEAQLDFASPKQC 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             ++   +    +   +  + +P K   R ++ ++K+ E+G+  I P+I  +++ T   +
Sbjct: 63  EVRILKCTTQSPRSYYLHLVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKV 122

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKL 181
           +R     +SA +Q     LP +  P       K    +     I    E    E  L   
Sbjct: 123 ERFEKILLSAMKQSLQCYLPKLNAPIASSQFFKAMKTDTSAKYIAHCYEN---EKRLFSR 179

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                   + +LIGPEG + + E  T     FV P+SLG   LR++TAAV A   V  +
Sbjct: 180 TLTPFPERITVLIGPEGDFSTTELNTALQQAFV-PISLGDTRLRTETAAVVACHTVAVL 237


>gi|121596395|ref|YP_988291.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax sp. JS42]
 gi|120608475|gb|ABM44215.1| protein of unknown function DUF558 [Acidovorax sp. JS42]
          Length = 242

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R     PL              +   VLR++ GD + LFNG+ GEW + ++++G+S +
Sbjct: 1   MPRFHCPLPLAADALLTLPPTAARH-VQVLRLQPGDAVTLFNGEGGEWSATVTHMGRSDV 59

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           + +V   S  + + +  V  +       R+D++++K+ E+G  +I+P+    +      +
Sbjct: 60  QVQVGSHSAVEREAARAVHLVVGMPANERMDWLVEKATELGAASIQPIAAARSVLKLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
                    +   ++A EQC    +P ++ P +L   L+    +     A     S    
Sbjct: 120 RAAKRQQHWQAIAVAACEQCGRNRVPSVHAPLSLADWLRQPPADALAPDAARLLLSLRSG 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           S     A A    V +L GPEGG  ++E++   +  F  P SLG R+LR++TA+V
Sbjct: 180 SRPLREAAAQGGAVWVLHGPEGGLTAQEEDAALAQGFA-PASLGARVLRAETASV 233


>gi|319778530|ref|YP_004129443.1| Ribosomal RNA small subunit methyltransferase E [Taylorella
           equigenitalis MCE9]
 gi|317108554|gb|ADU91300.1| Ribosomal RNA small subunit methyltransferase E [Taylorella
           equigenitalis MCE9]
          Length = 244

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 11/240 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F   PL I +  K   D  ++    LR+KEG  I LF+G + E+   IS+      F
Sbjct: 4   PRFFYTLPLEIGSTIKLPKDITNHAGRSLRLKEGTKISLFSGDNTEYHGTISFNSSDAFF 63

Query: 68  KVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            VE  +  S+     +         +++D++I+K+VE+G+    P+I + +      +  
Sbjct: 64  NVEDIKEISRELPLRIGLAQGLATGDKMDFIIEKAVEIGVSDFYPIIAKRSVLKLNNEKF 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +       ISA+EQC    +  ++ P  +   ++N   +  ++   +    +++   
Sbjct: 124 EKKLAHWSRIIISASEQCGRNKIMQLHQPQDINEFIQNTSDSLYLIAHPDA---QSNFLG 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                   N  +LIGPEGG+ S E E L        +SLG R+LR++TA +  ++ + AI
Sbjct: 181 TAETEDFDNSIVLIGPEGGWDSTELEKLRKEN-SRLISLGQRVLRTETAGIVTVSYLTAI 239


>gi|167752853|ref|ZP_02424980.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216]
 gi|167659922|gb|EDS04052.1| hypothetical protein ALIPUT_01114 [Alistipes putredinis DSM 17216]
          Length = 253

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 7/237 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +   P  +  +   S ++  +   VLRM  G+ + + +G+   +  +I     K  
Sbjct: 1   MQLFY--APDIVPPEYTLSEEESKHCIRVLRMACGEELHITDGRGNLYRCEIVDDNPKRC 58

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
           R +V +  S        +    +P K  +R ++ ++K+ E+G+  I P+ T +++     
Sbjct: 59  RVRVRDTNSEFGKLPYRLTMAVAPTKNNDRFEWFLEKATEIGVAEIIPLATEHSERRTLK 118

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLH 182
            +R      +A +Q      P ++  T L  ++K  +D    I   D    +       H
Sbjct: 119 PERENKVITAAVKQSLKAYHPRLHEITPLRQVIKQPFDGQKFIAHCDAPRSALGKAFLPH 178

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +    +V +LIGPEG +  EE +      F   ++LG + LR++TAAV A ALV A
Sbjct: 179 ILHKGGDVLVLIGPEGDFSPEEIDLAVRGGF-REITLGSQRLRTETAAVMATALVAA 234


>gi|282877983|ref|ZP_06286792.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310]
 gi|281299984|gb|EFA92344.1| RNA methyltransferase, RsmE family [Prevotella buccalis ATCC 35310]
          Length = 241

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 106/236 (44%), Gaps = 7/236 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF- 67
           R F        T+     ++  +   VLR+K GD I L +G+   + + ++         
Sbjct: 5   RYFYVPNAAQATELPL--EEARHAVSVLRLKAGDEIFLMDGEGSFYQANVTLAATKHCMY 62

Query: 68  -KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             V+   + +T +  V    +P K  +R+++MI+K  E+G   I  +  R+++     +D
Sbjct: 63  DIVKALPQQKTWKGHVHLAIAPTKMMDRMEWMIEKMTEVGFDEITFLDCRFSERKKLRID 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAI 184
           R+    I+A +Q      P ++P  + +  + +  +    I         ++ L ++   
Sbjct: 123 RLEKIVIAAMKQSRKAWKPVVHPIMSFQDFVNQQREGGLYIAHCYTEIARKDFLSEIQQA 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               ++ +L+GPEG +  +E +      F + +SLG   LR++TA + ++ + Q +
Sbjct: 183 NDQQDITMLVGPEGDFSMDEVKQALEKGF-SSVSLGQNRLRTETAGLVSIVMSQVV 237


>gi|291166400|gb|EFE28446.1| RNA methyltransferase, RsmE family [Filifactor alocis ATCC 35896]
          Length = 247

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           + R +VD P   K        ++  ++  VLR   GD + +F+   GE+++KIS +  K 
Sbjct: 1   MDRFYVDHPF--KEHAFLDDIEEIKHITKVLRFSVGDYVEIFDSVQGEYIAKISAIDSKR 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
           I F ++ +         V       K +R++++IQKS E+G+  I PV  + +    +  
Sbjct: 59  IYFDIQKELPKSKSNIFVTLYQGIAKGHRMEFLIQKSTELGVDTIIPVRFQRSVAKLEKD 118

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADET------CG 173
              + R     + A++QC    +  +        L      ++  + F +E         
Sbjct: 119 DKKIQRWNKICLEASKQCKRNKISCVKNAIDFSELSSELLKNDLNLFFYEEEHNLTLKSY 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +  L ++  + +  ++ I++GPEGG   +EK+ L S   +  LSLG RILR++T +VA 
Sbjct: 179 LKEQLNRIKVLQNGVSIGIIVGPEGGITEQEKDILVSEG-IPSLSLGKRILRTETVSVAV 237

Query: 234 MALVQAIC 241
           ++++    
Sbjct: 238 LSMLHYEL 245


>gi|260892511|ref|YP_003238608.1| protein of unknown function DUF558 [Ammonifex degensii KC4]
 gi|260864652|gb|ACX51758.1| protein of unknown function DUF558 [Ammonifex degensii KC4]
          Length = 251

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 10/230 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++R+FV      +T+     ++ HYL  VLR++ GD + + +G+       I    +  +
Sbjct: 1   MRRVFVLPEELGETKVILPPEESHYLLSVLRLRAGDRVAVHDGEGRARAGIILRESRGRV 60

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
             ++ EY S        V       K  ++D ++QK+ E+G+  I P++T         +
Sbjct: 61  EVELGEYLSLPPEPPVFVTLFQGIPKGEKMDLVVQKATELGVSRIVPLLTERVVVQWDGE 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R +     A  QC   T+P I   T+L   L+  +     +   E   + +  
Sbjct: 121 RARKRRERWQRLAREAVRQCGRSTVPRIKEVTSLPQALEELEPETVGIMPWEGERNLSLR 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             LH+  H   VA+ IGPEGG+   E         V  ++LGPRILR++T
Sbjct: 181 SCLHS-RHPRRVALFIGPEGGFSEREVALARERG-VFTVTLGPRILRTET 228


>gi|296877184|ref|ZP_06901224.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           15912]
 gi|296431704|gb|EFH17511.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           15912]
          Length = 247

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGLASSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVESRQL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D   +IV A E    E     
Sbjct: 120 SKKVEKLEKIALGAAEQSKRNLVPSITLFEKKADFLAQLDQFDRIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ L  +     +  + GPEGG    E E+  +   +    LGPRILR++TA + A++ 
Sbjct: 180 LIQSLTGLEAGSKLLFIFGPEGGLSPAEIESFEAKGAILA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSVVT 243


>gi|184155285|ref|YP_001843625.1| hypothetical protein LAF_0809 [Lactobacillus fermentum IFO 3956]
 gi|183226629|dbj|BAG27145.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 249

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +          +V       K   + + ++QK+ E+G   I    +  +      Q 
Sbjct: 61  KVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               ++R++    +AAEQ     +P +     L+ LL  +  + ++V  +E+        
Sbjct: 121 QGKKVERLQKIANAAAEQSHRNQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGERAA 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  MA 
Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239

Query: 237 VQAIC 241
           V    
Sbjct: 240 VSYHF 244


>gi|329924040|ref|ZP_08279303.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5]
 gi|328940879|gb|EGG37187.1| RNA methyltransferase, RsmE family [Paenibacillus sp. HGF5]
          Length = 256

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 17/252 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        + + +GD   ++A V+R + GD +++ +G   E L +I  +     
Sbjct: 1   MQRYFVTPAQFEGDRVEITGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSV 60

Query: 67  FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           F V  +    SQ  +  V    S  K ++++ +IQK  E+G  +  P ++  T      +
Sbjct: 61  FAVVIEPMEMSQEPRLQVSIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P +  P T + LL  +     + F  E        
Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLR 180

Query: 179 --------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                   + L   A   ++ +++GPEGG+  E +           + LG RILR +TA 
Sbjct: 181 DVLKPFAEQALRESAKPASLLLVVGPEGGFTEE-ECRAAEAAGAVAVGLGRRILRCETAG 239

Query: 231 VAAMALVQAICG 242
           + A+A      G
Sbjct: 240 MTALACALYESG 251


>gi|261405594|ref|YP_003241835.1| hypothetical protein GYMC10_1745 [Paenibacillus sp. Y412MC10]
 gi|261282057|gb|ACX64028.1| protein of unknown function DUF558 [Paenibacillus sp. Y412MC10]
          Length = 256

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        + + +GD   ++A V+R + GD +++ +G   E L +I  +     
Sbjct: 1   MQRYFVTPAQFEGDRVEITGDDARHIAKVMRGRLGDKLIVSDGVSREALMEIERIDAGSV 60

Query: 67  FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           F V  +    SQ     V    S  K ++++ +IQK  E+G  +  P ++  T      +
Sbjct: 61  FAVVIEPMEMSQEPLLQVSIAQSLPKGDKMETVIQKCTEIGAVSFVPFLSERTIVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     AAEQ     +P +  P T + LL  +     + F  E        
Sbjct: 121 KEGKRLERWRKIAKEAAEQAHRNRIPSVEQPLTWKNLLAAFSGYDAVYFCYEKEQGSQLR 180

Query: 179 --------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                   + L   A   ++ +++GPEGG+  E +           + LG RILR +TA 
Sbjct: 181 DVLKPFAEQALRESAKPASLLLVVGPEGGFTEE-ECRAAEAAGAVAVGLGRRILRCETAG 239

Query: 231 VAAMALVQAICG 242
           + A+A      G
Sbjct: 240 MTALACALYESG 251


>gi|296313945|ref|ZP_06863886.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC
           43768]
 gi|296839486|gb|EFH23424.1| 16S rRNA methyltransferase RsmE [Neisseria polysaccharea ATCC
           43768]
          Length = 241

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++   L +        +   +L +VLR++  +NI LF+GK     ++++ + K   
Sbjct: 1   MSRFYLPENLSVGQTVALPDNIVRHL-NVLRVRPNENITLFDGKGKAHTAQLTVLEKRRA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                           ++  I S    +R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  KAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVELGITAIQPVISERCIVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P       L      + +++       S N 
Sbjct: 120 RAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKMPSESTKLIM------SINR 173

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I H    +  ++GPEGG+  +E++      F   ++LG RILR++TAA+AA+A 
Sbjct: 174 ARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAALAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|187735952|ref|YP_001878064.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426004|gb|ACD05283.1| protein of unknown function DUF558 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 245

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R F+          +  GD+ H+ A VLR+K+GD+ ++F+G      + ++   +S  
Sbjct: 1   MARFFLPPSEWAAPAWELRGDEAHHAAKVLRLKQGDSCIVFDGCGRAAHAVVAEPPRSSG 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN----- 119
           +      +       + +    +  K   +D +IQKSVE+G+ AI P++T  T       
Sbjct: 61  VLLVPGEECPPSPPVAHLTLCQAVPKGANMDLIIQKSVELGVSAIVPLVTDRTIVRLNAR 120

Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  + +   + A +QC   TLP +  P      L+        + A    G     
Sbjct: 121 EAEAKRQKWQRIALEACKQCGQNTLPEVALPVPFAEWLRGGIPEGLNIIASLAPGVRPVR 180

Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           E L       + + ++L+GPEG +   E        FV P++LGP +LR +TAA   +A 
Sbjct: 181 EVLETARSRSVRHASLLVGPEGDFTDRETAMALEAGFV-PVTLGPIVLRVETAAFFGLAA 239

Query: 237 VQAIC 241
           ++   
Sbjct: 240 MRYAL 244


>gi|237715604|ref|ZP_04546085.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408613|ref|ZP_06085159.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646252|ref|ZP_06723905.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a]
 gi|294808155|ref|ZP_06766923.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298481449|ref|ZP_06999641.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22]
 gi|229444313|gb|EEO50104.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353478|gb|EEZ02572.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638385|gb|EFF56750.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CC 2a]
 gi|294444662|gb|EFG13361.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295086912|emb|CBK68435.1| RNA methyltransferase, RsmE family [Bacteroides xylanisolvens XB1A]
 gi|298272313|gb|EFI13882.1| RNA methyltransferase, RsmE family [Bacteroides sp. D22]
          Length = 232

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80
           +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  +      
Sbjct: 14  ELPEEEAQHCTRVLRLGIGDEITLTDGKGNFYKAEITVATNKRCFVTIKETIFQEPLWPC 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q  
Sbjct: 74  HLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP +      +  ++  +   Q   A    G +  L+ +  +    +  +LIGPEG 
Sbjct: 134 KARLPKLNEMIEFDPFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 191 FSEEEVKKAIEQGFV-PISLGKSRLRTETAALVACHTLN 228


>gi|283479683|emb|CAY75599.1| UPF0088 protein yggJ [Erwinia pyrifoliae DSM 12163]
          Length = 205

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)

Query: 44  ILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKS 101
           + LF+G    + ++I    K         SR  +++S +      +  +  ++++ IQK+
Sbjct: 2   LELFDGTGLVFAAEIIQADKKNVCVKINASREDSRESPLHLHLGQVMSRGEKMEFTIQKA 61

Query: 102 VEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155
           VE+G+  I P+ +         +     + + +   I+A EQC    +P +     L+  
Sbjct: 62  VELGVNVITPLFSERCGVKLDAERLAKKIQQWQKIAIAACEQCGRNGIPEVRNAMALDAW 121

Query: 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVT 215
               +   ++        S N+L        +  V +LIGPEGG  ++E        F T
Sbjct: 122 CAEPEPGLKLNLHPRAKHSINTLPL-----PVERVRLLIGPEGGLSADEITMTAQHGF-T 175

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGD 243
            + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 176 DILLGPRVLRTETTALTAITALQVRFGD 203


>gi|312864411|ref|ZP_07724644.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415]
 gi|311100132|gb|EFQ58343.1| RNA methyltransferase, RsmE family [Streptococcus downei F0415]
          Length = 248

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 20/246 (8%)

Query: 7   LKRLFV----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           +++ FV    + PL IK       D   ++  V+R+K  D + L      + L+++  V 
Sbjct: 1   MQQYFVKGRPENPLTIK-----DKDTLKHMFQVMRLKADDKVTLVFDDGIKRLARVLNVD 55

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
                 ++    +      V       K ++LD++ QK+ E+G  AI        V+   
Sbjct: 56  SQTFEILQGLEDNVELPVSVTIASGFPKGDKLDWLTQKATELGADAIWAFPADWSVVKWD 115

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +      D++    + AA+Q     LP +      + LLK      +I  A E      
Sbjct: 116 GKKLAKKEDKLAKIALGAAQQSKRNRLPQVKLFEKKKDLLKQLPDFDKIFLAYEESAKAG 175

Query: 177 SLEK----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            L      L        +  + GPEGG   +E         + P+ LGPRI+R++TA + 
Sbjct: 176 ELSTLASSLRQSQSGDKLLFIFGPEGGISPQELAEFEKSGAI-PVGLGPRIMRAETAPLY 234

Query: 233 AMALVQ 238
           A++ V 
Sbjct: 235 ALSAVS 240


>gi|312898001|ref|ZP_07757410.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis
           F0359]
 gi|310620926|gb|EFQ04477.1| RNA methyltransferase, RsmE family [Megasphaera micronuciformis
           F0359]
          Length = 243

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++LF DFP  I+ +   S +   ++  VLR   GD + + +G    +   I+       
Sbjct: 1   MRKLFTDFP--IEGEFYLSPEDSRHVVRVLRHVTGDVLTVSDGTGIAYTCLIADTAGERA 58

Query: 67  F---KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     +T++ ++    + +K +R D+++QK+ E+G+  + P+  ++       
Sbjct: 59  LMRPLKKIVPEDETERHELILAAALLKNDRFDWLVQKATELGVDRVVPIQMKHCVVKLDE 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       R +   + AA+QC    +P +    TL+ L++ +D     +  +   G E +
Sbjct: 119 KRRKERCARWQKIALEAAKQCGRTRVPSVDEVRTLKELIQEYDRYFFFIPYE---GEEKA 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLH-SLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  A   +  I IGPEGGY  EE E L  S      +SLG RI+R++TAA+AA ++
Sbjct: 176 ARIAVERAAGEDTVICIGPEGGYAPEEIEELTSSCEQYAVVSLGKRIMRAETAALAACSV 235

Query: 237 VQAICG 242
           +    G
Sbjct: 236 IMYERG 241


>gi|260171577|ref|ZP_05757989.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides sp. D2]
 gi|293370883|ref|ZP_06617428.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f]
 gi|315919891|ref|ZP_07916131.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634099|gb|EFF52643.1| RNA methyltransferase, RsmE family [Bacteroides ovatus SD CMC 3f]
 gi|313693766|gb|EFS30601.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 232

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80
           +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  +      
Sbjct: 14  ELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQEPLWPC 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q  
Sbjct: 74  HLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP +      +  ++  +   Q   A    G +  L+ +  +    +  +LIGPEG 
Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 191 FSEEEVKKAIERGFV-PISLGKSRLRTETAALVACHTLN 228


>gi|325697805|gb|EGD39689.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK160]
          Length = 250

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+K GD + L      + L+++   G   
Sbjct: 1   MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKAGDQVTLVFDDGIKRLAQVLDSGHQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK+ E+G  A+        V     + 
Sbjct: 59  LEILEELADNTELPVQVTIASGFPKGDKLEFITQKATELGACALWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L       +I+ A E    E    
Sbjct: 119 LGKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKAAFLAVLADFDRIIVAYEESAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                L  +     V  + GPEGG   +E +       V+   LGPRILR++TA + A+ 
Sbjct: 179 ALFRALSGLEAGAKVLFIFGPEGGLSPDEIDAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|150006102|ref|YP_001300846.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides vulgatus ATCC
           8482]
 gi|254883488|ref|ZP_05256198.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775280|ref|ZP_06740803.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510]
 gi|319641723|ref|ZP_07996406.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A]
 gi|149934526|gb|ABR41224.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836281|gb|EET16590.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450857|gb|EFG19334.1| RNA methyltransferase, RsmE family [Bacteroides vulgatus PC510]
 gi|317386697|gb|EFV67593.1| hypothetical protein HMPREF9011_02004 [Bacteroides sp. 3_1_40A]
          Length = 233

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I +  +   ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + 
Sbjct: 9   IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           +     +    +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA
Sbjct: 69  KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q    T+P +   T     + + D   Q   A    G +  L+ +  +    +  ++I
Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKPLLKDI--LRSGEDALVMI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEG +  EE     +  F  P+SLG   LR++TAA+ A   +  +
Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230


>gi|319765029|ref|YP_004128966.1| hypothetical protein Alide_4381 [Alicycliphilus denitrificans BC]
 gi|330827224|ref|YP_004390527.1| ribosomal RNA small subunit methyltransferase E [Alicycliphilus
           denitrificans K601]
 gi|317119590|gb|ADV02079.1| protein of unknown function DUF558 [Alicycliphilus denitrificans
           BC]
 gi|329312596|gb|AEB87011.1| Ribosomal RNA small subunit methyltransferase E [Alicycliphilus
           denitrificans K601]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 15/240 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R      L    +         +   VLR++ GD + LFNG+ GEW + ++ +G+S +
Sbjct: 1   MPRFHCPLSLAAGARIALPPTAARH-VQVLRLQPGDALTLFNGEGGEWTATVARMGRSDV 59

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +V   +  + + +  V  +       R+D++++K+ E+G  +I+P+    +      +
Sbjct: 60  EVEVGAHAPVEREAARAVHLVVGMPANERMDWLVEKATELGAASIQPIAAARSVLKLAGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177
                    +   ++A EQC    +P +  P  L   L+       ++V        + +
Sbjct: 120 RAAKRQQHWQAIAVAACEQCGRNRVPPVAAPLLLSDWLRQSAPEGARLVL----SLRDGA 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                A      V +L GPEGG  ++E++   +  F  P SLG R+LR++TA+VAA+A++
Sbjct: 176 RALREAAGGAGAVWVLHGPEGGLTAQEEDAALAQGF-EPASLGARVLRAETASVAALAVL 234


>gi|160887114|ref|ZP_02068117.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483]
 gi|156107525|gb|EDO09270.1| hypothetical protein BACOVA_05130 [Bacteroides ovatus ATCC 8483]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80
           +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  +      
Sbjct: 14  ELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQEPLWPC 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q  
Sbjct: 74  HLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP +      +  ++  +   Q   A    G +  L+ +  +    +  +LIGPEG 
Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 191 FSEEEVKKAIERGFV-PISLGKSRLRTETAALVACHTLN 228


>gi|309388922|gb|ADO76802.1| protein of unknown function DUF558 [Halanaerobium praevalens DSM
           2228]
          Length = 253

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           + R F+D    I  +   SG+ Y++L + LR+  GD ++L +G   +  ++I +Y  +S 
Sbjct: 1   MHRFFIDQSTEIGKKVFISGNDYNHLKNSLRLDLGDRVILSDGNGFDLEAEIITYQTESA 60

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             K+  + +S+ +    V       K +++D +++K+ E+G   + P+ ++ T       
Sbjct: 61  ELKILTKEKSKVEPKIKVWLAQGLPKKSKMDLIVEKATEIGFSGLIPLESKRTIVKYNQK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSE 175
                  R +    +AA+Q     +P I        ++   + +D+   +++ DE   + 
Sbjct: 121 KKAKKRSRWQRVAEAAAKQSGRAVIPKIKNFCNSNNIKSFKEKFDY-VLVLWEDEKKTTI 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            S  K + IA    + ++IGPEGG+   E            ++LGPRILR++TA + A+ 
Sbjct: 180 KSFFKENEIAAEAKILLIIGPEGGFSEAEVNRFEQKLEAEIITLGPRILRTETAGIVALT 239

Query: 236 LVQA---ICGD 243
            + +     GD
Sbjct: 240 AILSEKGELGD 250


>gi|56476009|ref|YP_157598.1| 16S ribosomal RNA methyltransferase RsmE [Aromatoleum aromaticum
           EbN1]
 gi|56312052|emb|CAI06697.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 241

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 13/229 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R F   PL    + +      H+   VLR+++GD ++LF+G+ GE  +++   G+  +
Sbjct: 3   ISRFFFPCPLPDSGEIELPDALAHHALRVLRLRDGDPLVLFDGRGGELAARLQVRGRDAL 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             + EY +  +     +  + +     ++D+++QK+VE+G  A+ P+           + 
Sbjct: 63  AVRDEYHALERESPLSLVLVQALASGEKMDWIVQKAVELGTSALVPLQAERCVLKLSGER 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            H  +   R   ISA EQ     +P I P T L   L +     ++V          SL 
Sbjct: 123 AHKRVAHWRQVAISACEQSGRNRVPEIEPITGLREYLASAAVGSRLVLTPVEGRRLASLA 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +  A  H     +L+GPEGG+  EE     +   V P+ LGPR+LR++T
Sbjct: 183 RPDAALH-----LLVGPEGGWSDEELAMCRAAGCV-PVGLGPRVLRTET 225


>gi|148244283|ref|YP_001218977.1| hypothetical protein COSY_0119 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326110|dbj|BAF61253.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 238

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+ +  L I  +         +LA  LR  +G  I LFNG    +L+ I  V      +
Sbjct: 5   RLYQNISLKINKKLVLDEYASCHLAKALRFLQGQEITLFNGDGRNYLATIVRVKNYCEVE 64

Query: 69  VEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +   + + ++ Q ++  +    K  ++D++ QKSVE+G+  I P+ + Y       +   
Sbjct: 65  IHTCTHNNSESQLNITLVQGITKGEKMDFLTQKSVELGVNRIIPIFSEYCVIHLQDEKLQ 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             M+R +   I A EQ     +P +      E  + N       +       S      L
Sbjct: 125 KRMERWQKIIIGACEQSGRSVIPSLVLAMNFEDFV-NTKFGNGFILHHRAKYS------L 177

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +  +    I+IGPEGG   +E    +     + + LG RILR++TA++A +A +Q + 
Sbjct: 178 LEMNKVNQATIIIGPEGGLSDQEIANANEQGAQSLV-LGSRILRAETASLATIANMQLLW 236

Query: 242 G 242
           G
Sbjct: 237 G 237


>gi|160889128|ref|ZP_02070131.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492]
 gi|317480687|ref|ZP_07939774.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
 gi|156861135|gb|EDO54566.1| hypothetical protein BACUNI_01549 [Bacteroides uniformis ATCC 8492]
 gi|316903194|gb|EFV25061.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
          Length = 232

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+   +   ++  +   VLR++ GD ++L +GK   + ++IS            ++  Q 
Sbjct: 9   IQAHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T     +   +     I    E  G +  L+ +  +    +  +L
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYE--GEKPLLKDM--VHPGEDALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           IGPEG +  EE        F+ P+SLG   LR++TAA+ A  ++ 
Sbjct: 185 IGPEGDFSEEEVRKATENGFI-PISLGKSRLRTETAALVACHILN 228


>gi|332358374|gb|EGJ36199.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK49]
          Length = 250

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 14/245 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGMKRLARVLDPSQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK  E+G   I        V     + 
Sbjct: 59  LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASGIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SE 175
                +++      AAEQ     +P I         L       +I+ A E       S 
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRFFDKKADFLAALTDFDRIIVAYEESAKAGESA 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG   EE         V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAI 240
            V  +
Sbjct: 238 AVSVL 242


>gi|322377483|ref|ZP_08051974.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334]
 gi|321281683|gb|EFX58692.1| RNA methyltransferase, RsmE family [Streptococcus sp. M334]
          Length = 247

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPIQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++++    + AAEQ     +P I         L  +D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIKLFEKKADFLAQFDQFDSIIVAYEESAKEGEAAA 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQTVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|312870591|ref|ZP_07730705.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3]
 gi|311093866|gb|EFQ52196.1| RNA methyltransferase, RsmE family [Lactobacillus oris PB013-T2-3]
          Length = 251

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 13/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+              D  H+LA VLR + G+ + L       +L++++ +  +  
Sbjct: 1   MQRYFLAAEPSNDA-LTLPRDVAHHLATVLRAQPGEQVELVLADHRAYLAEVTTIQPATT 59

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            K+  Q    ++   +V  +    K   + ++++QK+ E+G   I    +  +       
Sbjct: 60  VKLVKQLPGNSELPVEVTLLCGLPKTKEKPEWIVQKATELGATTIAFFESERSISHWAAN 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                + R++     AAEQ      P +     L   L       ++V  +E+     + 
Sbjct: 120 KRERKLARLQKIADGAAEQSHRNYQPRVAYYENLTAALAANPAPIRLVAWEESAKQGETS 179

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              + L  +     V  + GPEGG  + E E + +   V P+ LGPRILR++TA +  ++
Sbjct: 180 ALAQVLTKLTAGEQVVAIFGPEGGLTTGEVERMQAAG-VVPVGLGPRILRTETAPLYFLS 238

Query: 236 LVQAIC 241
            V  +C
Sbjct: 239 AVSYVC 244


>gi|294084693|ref|YP_003551451.1| hypothetical protein SAR116_1124 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664266|gb|ADE39367.1| protein of unknown function DUF558 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 253

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+VD PL        + +Q HYL +V+R+  G  I LFNG+DGEW   I  + K   + 
Sbjct: 13  RLYVDAPLQASGFVTVTKEQAHYLGNVMRLPLGTVIALFNGQDGEWHGVIDALDKQGGQI 72

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q+R QT   D+  +F+P+K  RLD++ QK+ E+G   I PV T + Q +    +R+
Sbjct: 73  ALTDQTRPQTNSPDLWLLFAPVKKARLDFIAQKASELGASRIWPVRTEFCQISRVKDERL 132

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---ENSLEKLHAI 184
               I AAEQ + L +  I     L   L   + +  +++ DE        N    L AI
Sbjct: 133 AANAIEAAEQTERLDVARIMKFEKLATALAEREDDRLLIWCDEASAGAANHNITTALAAI 192

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                 AILIGPEGG+   E++ L  +      SLGPRILR
Sbjct: 193 DPPKKAAILIGPEGGFSPAERKVLTQVDNCLTTSLGPRILR 233


>gi|325679801|ref|ZP_08159372.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8]
 gi|324108471|gb|EGC02716.1| RNA methyltransferase, RsmE family [Ruminococcus albus 8]
          Length = 241

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R FV+            G    ++   LRM+ GD + +   +  +++ +I  +     
Sbjct: 1   MPRFFVEREDINDHTALIRGADAVHIGRSLRMRLGDELTVC-CEGRDYICRIDTISDEQC 59

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              V      Q   ++ +    +  K ++LD ++QKSVE+G   I PV+T         +
Sbjct: 60  TLTVLSSGEGQGEPKTRLTLYQAVPKGDKLDTIVQKSVELGAAEIVPVLTARCVSRPDEK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +     +R+    + AA+QC    +P +    +L+   K    +   +   E  GS  S 
Sbjct: 120 SFRKKRERLSRIALEAAKQCGRSIVPEVGEMISLDECAKRLGRHETGLICYEKGGSPLS- 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                 A   ++ + IG EGG+  EE E   +      + +G RILR +TA +AA+A++ 
Sbjct: 179 --ETVPADTGDIGVFIGSEGGFDEEEVEKCRANG-AKVIGMGSRILRCETAPLAAIAIIM 235

Query: 239 AICG 242
            + G
Sbjct: 236 NLTG 239


>gi|265755568|ref|ZP_06090189.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234174|gb|EEZ19767.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 233

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I +  +   ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + 
Sbjct: 9   IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           +     +    +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA
Sbjct: 69  KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q    T+P +   T     + + D   Q   A    G +  L+ +  +    +  ++I
Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKLLLKDI--LRSGKDALVMI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEG +  EE     +  F  P+SLG   LR++TAA+ A   +  +
Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230


>gi|307709666|ref|ZP_07646118.1| RNA methyltransferase family protein [Streptococcus mitis SK564]
 gi|307619564|gb|EFN98688.1| RNA methyltransferase family protein [Streptococcus mitis SK564]
          Length = 247

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFEDGIKRLARVLDVETRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPAVWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L  +D    IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNMVPSIKLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|262276809|ref|ZP_06054602.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114]
 gi|262223912|gb|EEY74371.1| RNA methyltransferase, RsmE family [alpha proteobacterium HIMB114]
          Length = 234

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/238 (35%), Positives = 136/238 (57%), Gaps = 10/238 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67
           RLF    L  K      GD YHYL++V+R + G +I LFN  +GE+L +I     K +  
Sbjct: 5   RLFFIESLEEKKTINIIGDDYHYLSNVMRCEVGSDIFLFNENNGEYLCRIIEKNKKKLIL 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +V  ++  +  Q+++  IF P K+++LD +IQK  E+G+ +  PVI+ +T+N   N++R+
Sbjct: 65  EVIQKAEYEKIQNNINLIFCPPKSHKLDTLIQKCTEIGVKSFIPVISDHTENRKLNLNRI 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R     + EQ + L +P I+ P + +  L    +  ++ FAD    S+ +L KL  I   
Sbjct: 125 RKIIKESVEQSNQLNIPHIFDPISFDQFLNQQKY--KVFFAD--IQSDINLSKLK-INLK 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            N +ILIGPEG + S+E +TL S       SLG RILRS+TAA+A++     +  +++
Sbjct: 180 ENNSILIGPEGDFSSKELKTLRSNNNFISFSLGKRILRSETAAIASL----VLFNNFF 233


>gi|94265595|ref|ZP_01289339.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|94269875|ref|ZP_01291589.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93451038|gb|EAT01999.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453874|gb|EAT04232.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 241

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65
           ++R F++       Q    G    +L  VLR++ GD + LF+G      ++IS      +
Sbjct: 1   MRRFFIEPTAITDRQAILQGADARHLRKVLRLQNGDEVELFSGDGLVHQARISGGAHDRV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH---Y 122
              +   ++       +    + +K+ ++D +IQK  E+G+ AI P ++ +T+       
Sbjct: 61  ELAILASNQRPPADLRLHLGQAMLKSKKMDLVIQKCTELGVAAIHPYLSHHTKVPAPEPA 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R +     + +QC+    P   P  + E  L         +   E   +    E   
Sbjct: 121 KIQRWQKIIRESCKQCNQPWPPVCRPEASFEQALAAGADCDLRLLCWEDPTAAPLREVAD 180

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +    ++ +LIGPEGG+ + E E   +  F+T + LG RILR
Sbjct: 181 RLTTPRSLMVLIGPEGGFSNHEVEAAKAAGFLT-VGLGRRILR 222


>gi|254703098|ref|ZP_05164926.1| 16S ribosomal RNA methyltransferase RsmE [Brucella suis bv. 3 str.
           686]
          Length = 214

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 22/220 (10%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           LRMKEGD +L+FNG+DGEW + +   G K +  +   Q+R Q K S++ Y F+P+K  +L
Sbjct: 2   LRMKEGDEVLVFNGRDGEWKASLQPEGRKRLLLEPLEQTRPQPKPSELIYCFAPLKQGQL 61

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           DYM+QK+VEMG G ++PVIT++TQ      +R+R   I AAEQC +L+LP        + 
Sbjct: 62  DYMVQKAVEMGAGVLQPVITQHTQVPRLGTERIRANAIEAAEQCGVLSLPDCREALRFDR 121

Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
            L  WD + +++F DE   S++ L  L  +   P+  +LIGPEGG+  EE++ LH LPFV
Sbjct: 122 FLDQWDTSRRLIFCDEGHESDDPLSILTGLEPGPS-GLLIGPEGGFSEEERQLLHRLPFV 180

Query: 215 TPLSLGPRILR----------SDTAAVAAMALVQAICGDW 244
           T + LGPRILR                    LVQA+ GDW
Sbjct: 181 TAIPLGPRILRADTAAVAAMA----------LVQAVLGDW 210


>gi|187778463|ref|ZP_02994936.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC
           15579]
 gi|187772088|gb|EDU35890.1| hypothetical protein CLOSPO_02057 [Clostridium sporogenes ATCC
           15579]
          Length = 255

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 28/254 (11%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           + FV     I  +    GD   ++  VLR++ GD+I + N +  E+  KI  + K  +  
Sbjct: 6   KFFVPAENIIDKKAIIDGDDVKHIYKVLRLECGDSININNCQGKEYKGKIESIDKKSVVV 65

Query: 68  KVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTH 121
           K+  Q +   +   ++       K+ ++D ++QKS E+G+  I P+IT   +        
Sbjct: 66  KILEQVKVNNESPLNIYLYQGLPKSTKMDLIVQKSTELGIKEIIPIITERVEIKTSLKEF 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +DR     + A +QC    +P +  P     LL+       I+   E+  +      +
Sbjct: 126 KKLDRWNRIALEACKQCKRSLIPSVREPLKFNDLLEEIKDMDLIIVPYESKENYGIKSLI 185

Query: 182 HAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             I +                         +   E   L  +     ++LGPRI R++TA
Sbjct: 186 KNIQYEKENIKNIGIIIGPEGG--------FEESEIRLLEEIK-AQIVTLGPRIFRTETA 236

Query: 230 AVAAMALVQAICGD 243
            +   +++    GD
Sbjct: 237 GIVCASIISYELGD 250


>gi|148260870|ref|YP_001234997.1| hypothetical protein Acry_1876 [Acidiphilium cryptum JF-5]
 gi|146402551|gb|ABQ31078.1| protein of unknown function DUF558 [Acidiphilium cryptum JF-5]
          Length = 238

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L RL +  PL        S  Q HYL  V+R + GD +L+FN   GE+ + I  + +
Sbjct: 1   MASLIRLHLPSPLSPGATLATSAAQAHYLGAVMRRRAGDPLLVFNAGSGEFAATIGALDR 60

Query: 64  SIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
                V   ++R+   + D    F+P++ +  + +++K+ E+G+  + PV+T  TQ    
Sbjct: 61  RAATLVLGARTRAPEPEPDCWLCFAPLRRDMTELVVEKATELGVSRLVPVLTARTQPARL 120

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
             DR+      AAEQ + LT+P I  P  L   L  +  + ++  A       ++   L 
Sbjct: 121 RADRLAAIATEAAEQSERLTIPDIAEPAPLAAFLAAFPPSRRLFVA----AERHAAPPLS 176

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +   A+L+GPEGG   EE + +    FV+P++LGPRILR++TAA+A +A + A
Sbjct: 177 PADPLQPHALLVGPEGGLAPEELDAMARHAFVSPVTLGPRILRAETAAIAGLARLLA 233


>gi|293365945|ref|ZP_06612648.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307702347|ref|ZP_07639305.1| RNA methyltransferase family protein [Streptococcus oralis ATCC
           35037]
 gi|291315623|gb|EFE56073.1| RsmE family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307624150|gb|EFO03129.1| RNA methyltransferase family protein [Streptococcus oralis ATCC
           35037]
          Length = 247

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFIKGSPISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFEDGIKRLARVLDVENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++++    + AAEQ     +P I         L  +D    IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIQLFEKKADFLAQFDQFDSIVVAYEESAKEGEAAA 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQTVTGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|227544930|ref|ZP_03974979.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           CF48-3A]
 gi|300910042|ref|ZP_07127502.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185097|gb|EEI65168.1| protein of hypothetical function DUF558 [Lactobacillus reuteri
           CF48-3A]
 gi|300892690|gb|EFK86050.1| RsmE family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 246

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 14/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV+  +    +     +  H+L  V+R + G ++ L       +L+ +S    +  
Sbjct: 1   MQRYFVN--VTPANEVTLPSEAAHHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTAT 58

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            K+  +  + ++    V       K   + + ++QK+ E+G   I       +       
Sbjct: 59  LKINQKLDADSELPVSVTLACGIPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGN 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                ++R++    SAAEQ     +P +     L+ LL ++    +IV  +E+     + 
Sbjct: 119 KQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLADYPATKRIVAWEESAKQGETS 178

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              ++ +A+    ++  + GPEGG    E   ++    V    LGPRILR++TA +  MA
Sbjct: 179 ALAQQFNALNLGDSLLAIFGPEGGLTENEIAKMNEAG-VVAAGLGPRILRTETAPLYFMA 237

Query: 236 LVQA 239
            +  
Sbjct: 238 AISY 241


>gi|60680491|ref|YP_210635.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis NCTC
           9343]
 gi|253563645|ref|ZP_04841102.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|60491925|emb|CAH06684.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251947421|gb|EES87703.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162028|emb|CBW21572.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 229

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS            ++  Q 
Sbjct: 9   IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEISVATHKRCLVNIKETIYQE 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     ++  D   Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPRLNEMTDFCTFIEK-DFKGQKFIAHCYEGEKPLLKDV--LTKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 186 GPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVACHTMN 228


>gi|258542801|ref|YP_003188234.1| 16S ribosomal RNA methyltransferase RsmE [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633879|dbj|BAH99854.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636938|dbj|BAI02907.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639991|dbj|BAI05953.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256643047|dbj|BAI09002.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256646102|dbj|BAI12050.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256649155|dbj|BAI15096.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256652142|dbj|BAI18076.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655199|dbj|BAI21126.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 275

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKAS----GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
             +HL RL+    +        +     DQ  YL  VLR K GD++ +FN   GEWL++I
Sbjct: 24  ASAHLPRLYNASEILGDAHTGLTLQIAPDQARYLGTVLRKKAGDHVRIFNANSGEWLARI 83

Query: 59  SYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
           + + K    F++E Q R+ T+Q  +   F+ +K +  D +++   E+G+    P+IT  T
Sbjct: 84  TEIRKDKGFFELERQLRAPTQQPTLVLAFALLKRDATDLVLRMGTELGVTHFMPLITERT 143

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN- 176
                N DR+      A EQC+   +P I  P +    L +W    ++  A E       
Sbjct: 144 NTHRINPDRLHAIATEATEQCERFDVPQIESPQSFTDFLASWPQEHRLFAAVERGEDRAI 203

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L   AH  +   L+GPEGG    E + +     +TP+SLGP +LR+DTA  A +AL
Sbjct: 204 HTPSLLPNAHAGD-GFLVGPEGGLSDRECQMMLKYSCITPISLGPLVLRADTAVAAGLAL 262

Query: 237 V 237
           +
Sbjct: 263 I 263


>gi|327459188|gb|EGF05536.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1057]
          Length = 250

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+K GD + L      + L+++   G+  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKAGDQVTLVFDDGMKRLARVLDPGQHS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +E  + +      V       K ++L+++ QK+ E+G GAI      ++      + 
Sbjct: 59  LEIMEELADNTELPVQVTIASGFPKGDKLEFITQKATELGAGAIWAFQADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +                 +I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFQAALADFDRIIVAYEESAKEGETA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG   EE         V+   LGPRILR++TA +  + 
Sbjct: 179 ALVRALSGLEAGAKVLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYTLT 237

Query: 236 LVQAIC 241
            +  + 
Sbjct: 238 AISVLL 243


>gi|319954606|ref|YP_004165873.1| ribosomal RNA small subunit methyltransferase e [Cellulophaga
           algicola DSM 14237]
 gi|319423266|gb|ADV50375.1| Ribosomal RNA small subunit methyltransferase E [Cellulophaga
           algicola DSM 14237]
          Length = 238

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 13/239 (5%)

Query: 7   LKRLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++ LF +  +   T +     ++  ++  VLR KEGD + L NGK   + ++I     + 
Sbjct: 1   MQ-LFYNPDINQDTPEFIFPTEESKHIVKVLRKKEGDILHLTNGKGYLFEAEILRADLRK 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              K+  ++  +     +  + +P K  +R ++ ++K+ E+G+  I P+I   ++     
Sbjct: 60  CAVKIIKETYHKKNSPALHLVVAPTKMNDRYEWFLEKATEIGVTEITPIICDNSERKVLK 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSL 178
           +DR+     +A +Q      P +  P + +  ++       +     +   E     +  
Sbjct: 120 LDRMEKVLQAAMKQSLQFHKPILNEPISAKTFIEQNNPTHQEEQQFFIAHCEETEKIDLK 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           E+L       N  ILIGPEG + + E E    L +  P+SLG   LR++TAA+ A A +
Sbjct: 180 ERLI---PSHNALILIGPEGDFSTSEIEIALRLGY-KPVSLGENRLRTETAAIFACATM 234


>gi|34495822|ref|NP_900037.1| hypothetical protein CV_0367 [Chromobacterium violaceum ATCC 12472]
 gi|34101677|gb|AAQ58045.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 241

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 16/231 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R ++D  L +  Q         +   VLR+  GD I LFNG+ GE+ + +S V K   
Sbjct: 1   MPRFYLDADLAVGQQLSLPDAVVRH-VQVLRLNAGDAITLFNGRGGEYQAALSAVMKRDA 59

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             V  +    S+     +         +++++ +QK VEMG+   +P+    +      +
Sbjct: 60  HCVIERFDDVSRETPLWLGLAQGISGGDKMEFTLQKGVEMGVSVFQPIAAGRSVVKLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177
                + R +   +SA EQ    T+P + P  TL   L    + + +++ +      + S
Sbjct: 120 RADKRVARWQEIVVSACEQSGRNTVPQVLPILTLNEWLAQRQEADIRLILSPR---GDRS 176

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L +L          ++ GPEGG+ ++E++   +  + TPL LGPRILR++T
Sbjct: 177 LAQL--AERPARSWLMAGPEGGFSAQEEDAALAAGW-TPLKLGPRILRTET 224


>gi|322388771|ref|ZP_08062368.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321140390|gb|EFX35898.1| RsmE family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 247

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEARKL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +   + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELIGELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L  +D   +IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSITLFEKKADFLAQFDQFDRIVVAYEESAKEGESAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 ISVLL 243


>gi|327472984|gb|EGF18411.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK408]
          Length = 250

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KE + + L      + L+++   G+  
Sbjct: 1   MQQYFIKGSPQSP--LLVTDKDTAKHMFSVMRLKEDEQVTLVFDDGMKRLARVLDPGQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK+ E+G GA+        V    ++ 
Sbjct: 59  LEILEEMADNTELPVRVTIASGFPKGDKLEFITQKATELGAGALWAFPADWSVAKWDSKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L       +I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKTDFLATLADFDRIIVAYEESAKEGETA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG  S+E         V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLETGAKVLFIFGPEGGLSSDEIAAFDQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|154493617|ref|ZP_02032937.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC
           43184]
 gi|154086827|gb|EDN85872.1| hypothetical protein PARMER_02957 [Parabacteroides merdae ATCC
           43184]
          Length = 232

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 10/237 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +      I    +   ++  +   VLR+ EGD ILL +GK   + + IS    K  
Sbjct: 1   MQIFYTPE---IAVNLELPEEEAGHCIRVLRLTEGDEILLTDGKGFFFKAAISRAHPKHC 57

Query: 66  RFKVEYQSRSQT-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              +  Q         ++    +P K  +R+++  +K+ E+G+ AI  +  R+++     
Sbjct: 58  EVNILEQWEQPALWNFNLHIAVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIK 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+    ISA +Q    TLP +   T     +       + +   E        +  H 
Sbjct: 118 PARLEKILISAMKQSQKATLPELNGMTDFRTFVSLPFAGRKFIAHCEEGVKPLLKQTYH- 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                N  +LIGPEG +  EE        F  P+SLG   LR++TAA+ A   +  +
Sbjct: 177 --PGENALVLIGPEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVACHTIHVL 230


>gi|119492311|ref|ZP_01623658.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106]
 gi|119453196|gb|EAW34363.1| hypothetical protein L8106_12155 [Lyngbya sp. PCC 8106]
          Length = 259

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 13/247 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY---VG 62
            L+RL +            + +Q HYL  VLR+++GD  ++ +G+   WL+++       
Sbjct: 3   QLQRLAIALAQISNRHIDLTAEQQHYLGRVLRLRQGDRFIVIDGRGHWWLAQLQVMLPAP 62

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNT 120
                 +E  S        V+   S  KT   D +++ S E+G+  I PVI++ T  + +
Sbjct: 63  SPHAKILEAISVQNELPIAVKLWVSLPKTG-FDDLVRYSTELGVSEIVPVISQRTVLKPS 121

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA-DETCGSENSLE 179
              ++R R     AAEQ +   +P +  P +    + ++        +    C +   L 
Sbjct: 122 SQKVERWRRIIREAAEQSERQIIPTLVDPISFANAIADFPDFSLAATSQPYLCLARGDLP 181

Query: 180 KL-----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            L        +   ++ +  GPEGG+ S E E   +  F   +SLG RILR+ TA V A+
Sbjct: 182 HLYDCMSSTQSTCDSITLATGPEGGWTSAEVEMAIASGF-QAVSLGRRILRAVTAPVVAL 240

Query: 235 ALVQAIC 241
           + V AI 
Sbjct: 241 SYVSAIW 247


>gi|225861586|ref|YP_002743095.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|225727552|gb|ACO23403.1| protein YqeU [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389950|gb|EGE88295.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA04375]
 gi|332200328|gb|EGJ14401.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA47368]
          Length = 247

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELDDNVELPVQVTISSGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|265762508|ref|ZP_06091076.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255116|gb|EEZ26462.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 229

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS            ++  Q 
Sbjct: 9   IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEISVAAHKRCLVNIKETIYQE 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     ++  D   Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPRLNEMTDFCTFIEK-DFKGQKFIAHCYEGEKPLLKDV--LTKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 186 GPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVACHTMN 228


>gi|119358138|ref|YP_912782.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355487|gb|ABL66358.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides DSM
           266]
          Length = 248

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 18/243 (7%)

Query: 10  LFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           LF   P  ++   T+    GD++H+L  V+R K GD +LL +G    +  +I  +GK  +
Sbjct: 3   LFYTTPKNLEGSRTEIALEGDEFHHLVRVVRKKPGDEVLLTDGNGSRFHVRIREIGKQRL 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +  +S      + V    S +K  +R D  ++K+ E+G+ AI P+IT  T      +
Sbjct: 63  TADILTRSIYPPSPTAVTVAMSLLKTPHRFDLFLEKATELGVTAIIPMITARTIALPPKE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +DR +   +SA+ Q   L LP I+ P +   +L   +++ +I+  +     +N L
Sbjct: 123 RIQGKLDRWQGIVLSASRQSKRLFLPRIHEPLSFAKVLDRDEYDLRILAHE--SSEQNPL 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     NV  +IGPEGG+ SEE     S   +   SLG  ILR++TA V A+A+V+
Sbjct: 181 IDFAE----KNVLFMIGPEGGFTSEEVSRARSCGVLES-SLGHTILRAETAGVFAVAMVR 235

Query: 239 AIC 241
           A  
Sbjct: 236 ARL 238


>gi|53712317|ref|YP_098309.1| 16S ribosomal RNA methyltransferase RsmE [Bacteroides fragilis
           YCH46]
 gi|52215182|dbj|BAD47775.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 229

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+T  +   ++  +   VLR+  GD I L +GK   + ++IS            ++  Q 
Sbjct: 9   IQTSTELPEEEAQHCVRVLRLTAGDEISLTDGKGNFYRAEISVATHKRCLVNIKETIYQE 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWDGHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKTERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     ++  D   Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPRLNEMTDFYTFIEK-DFKGQKFIAHCYEGEKPLLKDV--LTKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 186 GPEGDFSEEEVKKAIEKGFV-PISLGKSRLRTETAALVACHTMN 228


>gi|114331048|ref|YP_747270.1| hypothetical protein Neut_1049 [Nitrosomonas eutropha C91]
 gi|114308062|gb|ABI59305.1| protein of unknown function DUF558 [Nitrosomonas eutropha C91]
          Length = 253

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 116/254 (45%), Gaps = 22/254 (8%)

Query: 9   RLFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           R F   P+     Q   + D  H+   VLR+K+GD ++LF+G  GE+   +  V KS   
Sbjct: 4   RFFHTLPIHPDAKQVTLNNDTSHHAVQVLRLKQGDPVILFDGTGGEFSGCLVQVRKSACV 63

Query: 68  KVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
               Q     ++S   +    +     ++D++IQK+VE G+  I+P+IT  T      + 
Sbjct: 64  VKIEQHLPVERESPLMLTLAQAVCTNEKMDWIIQKAVEQGVIYIQPLITNRTLIRLTGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---------WDHNCQIVFADE 170
                   +   ISA EQC    +P + P  +L   L+                I+ +  
Sbjct: 124 ADKRWQHWQKIIISACEQCGRNRIPQLLPLMSLSHWLEQKLLQKQENSNLSGRDIILSPV 183

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                  L +L        + +L GPEGG+  EE + +    F+ P+ LG RILR++TAA
Sbjct: 184 A---RLRLAELSPPESGECITLLTGPEGGFTEEETDAMLHAGFI-PICLGTRILRTETAA 239

Query: 231 VAAMALVQAICGDW 244
           +AA+A  Q + GD+
Sbjct: 240 LAAIAAAQVLWGDY 253


>gi|270296112|ref|ZP_06202312.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273516|gb|EFA19378.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 232

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I+T  +   ++  +   VLR++ GD ++L +GK   + ++IS            ++  Q 
Sbjct: 9   IQTHAELPEEEAAHAVRVLRLQAGDEVMLTDGKGCFYRAEISTATNKRCLVNILETLPQA 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWKGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q     LP +   T     +   +     I    E  G +  L+ +  +    +  +L
Sbjct: 129 IKQSLKARLPQLNEMTDFNKFITQPFPGQKFIAHCYE--GEKPLLKDM--VHPGEDALVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           IGPEG +  EE        F+ P+SLG   LR++TAA+ A  ++ 
Sbjct: 185 IGPEGDFSEEEVRKATENDFI-PISLGKSRLRTETAALVACHILN 228


>gi|237721383|ref|ZP_04551864.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449179|gb|EEO54970.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 232

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 7/219 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80
           +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  +      
Sbjct: 14  ELPEEEAQHCIRVLRLSIGDEITLTDGKGNFYKAEITVATNKRCFVNIKETIFQEPLWPC 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +   +++      +R+    ISA +Q  
Sbjct: 74  HLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCHFSERKVIKTERIEKILISAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP +      +  ++  +   Q   A    G +  L+ +  +    +  +LIGPEG 
Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  EE +      FV P+SLG   LR++TAA+ A   + 
Sbjct: 191 FSEEEVKKAIERGFV-PISLGKSRLRTETAALVACHTLN 228


>gi|212692063|ref|ZP_03300191.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855]
 gi|237724658|ref|ZP_04555139.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212665455|gb|EEB26027.1| hypothetical protein BACDOR_01558 [Bacteroides dorei DSM 17855]
 gi|229436853|gb|EEO46930.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 233

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I +  +   ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + 
Sbjct: 9   IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTETIPQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           +     +    +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA
Sbjct: 69  KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q    T+P +   T     + + D   Q   A    G +  L+ +  +    +  ++I
Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKLLLKDI--LRSGEDALVMI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEG +  EE     +  F  P+SLG   LR++TAA+ A   +  +
Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230


>gi|168492597|ref|ZP_02716740.1| protein YqeU [Streptococcus pneumoniae CDC0288-04]
 gi|183573256|gb|EDT93784.1| protein YqeU [Streptococcus pneumoniae CDC0288-04]
          Length = 247

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELDDNVELPVQVTISSGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|218262623|ref|ZP_03477011.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223272|gb|EEC95922.1| hypothetical protein PRABACTJOHN_02690 [Parabacteroides johnsonii
           DSM 18315]
          Length = 232

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 10/237 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +      I    +   ++  +   VLR+ EGD ILL +GK   + + IS    K  
Sbjct: 1   MQIFYTPE---IAVNPELPEEEAGHCIRVLRLTEGDEILLTDGKGSFFKAAISRAHPKHC 57

Query: 66  RFKVEYQSRSQT-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              +  Q         ++    +P K  +R+++  +K+ E+G+ AI  +  R+++     
Sbjct: 58  EVNILEQWEQPALWNFNLHIAVAPTKNMDRMEWFAEKATEIGINAITCLNCRFSERKEIK 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+    +SA +Q    TLP +   T     +       + +   E        +  H 
Sbjct: 118 PARLEKILVSAMKQSQKATLPELNGMTDFRTFVSLPFAGRKFIAHCEEGVKPLLKQTYH- 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                N  +LIGPEG +  EE        F  P+SLG   LR++TAA+ A   +  +
Sbjct: 177 --PGENALVLIGPEGDFSPEEIALALKCGF-EPISLGESRLRTETAALVACHTIHVL 230


>gi|153807645|ref|ZP_01960313.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185]
 gi|149130007|gb|EDM21219.1| hypothetical protein BACCAC_01927 [Bacteroides caccae ATCC 43185]
          Length = 233

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 7/226 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I+   +   ++  +   VLR+  GD I L +GK   + ++I+    K     + E   + 
Sbjct: 9   IQKTNELPEEEAQHCTRVLRLSIGDEITLTDGKGSFYKAEITAATNKRCLVAIKETIFQK 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWPCHLHIAMAPTKNMDRNEWFAEKATEIGFDELTFLNCRFSERKVIKNERIEKILISA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     + N +   Q   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMTDFNKFI-NQEFKGQKFIAHCYEGEKPLLKDV--LKAGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEG +   E E      F TP+SLG   LR++TAA+ A   +  +
Sbjct: 186 GPEGDFSEGEVEKAIERGF-TPISLGKSRLRTETAALVACHTLNLL 230


>gi|15903649|ref|NP_359199.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           R6]
 gi|182684729|ref|YP_001836476.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14]
 gi|15459275|gb|AAL00410.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|182630063|gb|ACB91011.1| hypothetical protein SPCG_1759 [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 12/248 (4%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           + + +++ FV          +   +   ++  V+R+KE D + L      + L+++  + 
Sbjct: 1   MEASMQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDME 59

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
                 V+  + +      V       K ++L+++ QK  E+G   I        V    
Sbjct: 60  NRQFELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWD 119

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     ++++    + AAEQ     +P I         L   D    I+ A E    E 
Sbjct: 120 GKKLGKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEG 179

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + 
Sbjct: 180 EAAALLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLY 238

Query: 233 AMALVQAI 240
           A++ +  +
Sbjct: 239 ALSALSVL 246


>gi|218246145|ref|YP_002371516.1| hypothetical protein PCC8801_1295 [Cyanothece sp. PCC 8801]
 gi|218166623|gb|ACK65360.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8801]
          Length = 239

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 10/234 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RL ++    +    + + +Q HYL  VLR+K GD  +  +G+   +L+++      I 
Sbjct: 1   MYRLVIESIQTLDQSVRLTPEQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEEDSAKI- 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124
             +E           +  + +  K N  + +++   E+G+  + P+I++ T  + + + +
Sbjct: 60  --LENLKECTELPLAITLMVALPKGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKL 117

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEKLH 182
           +R R     A EQ +   +P I  P      L+N D   + + +         + L  L 
Sbjct: 118 ERWRKIATEAGEQSERQLIPTIVDPIVFNEALRNIDKIPSDRYICVTRKKA-HHLLTHLS 176

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             +  P + I  G EGG+  EE ET  +  F  P++LGPRILR+ TA + A++L
Sbjct: 177 ETSQNP-LVIATGCEGGWTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSL 228


>gi|228477933|ref|ZP_04062546.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           salivarius SK126]
 gi|228250326|gb|EEK09571.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           salivarius SK126]
          Length = 247

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+              D   ++ +V+R+ E D ++L      + L++++     I 
Sbjct: 1   MQQYFIKG-QVENPVIIKDKDTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHIF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++LD + QK+ E+G  AI        V+    +  
Sbjct: 60  EVIEDLNDNVEMPVSVTIASGFPKGDKLDLVTQKATELGAQAIWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P +         L   D+  +I  A E       L  
Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRVPEVRLFEKKGEFLSELDNFDKIFIAYEETAKAGELAT 179

Query: 181 LH----AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      + +   +  + GPEGG    E +       +  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELVQVENSQKILFIFGPEGGISPSEIDVFEEAGGLK-IGLGPRIMRTETAPLYALSS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|229916343|ref|YP_002884989.1| hypothetical protein EAT1b_0613 [Exiguobacterium sp. AT1b]
 gi|229467772|gb|ACQ69544.1| protein of unknown function DUF558 [Exiguobacterium sp. AT1b]
          Length = 254

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+              D  H++  VLR   G  ++L +G   E+   ++ + K   
Sbjct: 1   MQRYFLTKEAFKGETVTLPSDVVHHIGTVLRQGPGYEMVLLDGTGVEYACVVTSLEKKSG 60

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
                 SR        +V   ++  K ++++ + QK+ E+G+  +      R V     +
Sbjct: 61  EAKVMSSRQATTELPIEVTLAYALPKGDKVELVAQKATELGVHHLLLFESTRSVAKWDGK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                ++R++     AAEQ     +P     +  + L +  D    +V A E    E   
Sbjct: 121 KAPKKVERIQKIMQEAAEQSYRAVVPTCTYISP-KELQQKIDGYDAVVIAYEESAKEGEQ 179

Query: 178 ---LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
               + L  +     V ++ GPEGG+   E          T  + GPRILRS+TA + A+
Sbjct: 180 SAFAQLLTQLKPKQRVLVITGPEGGFDVNEINQWTQAG-ATACAFGPRILRSETAPLYAL 238

Query: 235 ALVQAIC 241
           + +    
Sbjct: 239 SAISFAL 245


>gi|16329261|ref|NP_439989.1| hypothetical protein slr0722 [Synechocystis sp. PCC 6803]
 gi|6226389|sp|P72667|RSME_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|1651741|dbj|BAA16669.1| slr0722 [Synechocystis sp. PCC 6803]
          Length = 303

 Score =  220 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 4/236 (1%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL V     I+     +  Q HYL  VLR+++GD  ++ +G  G W ++++ +       
Sbjct: 67  RLVVAPEQIIEATVTLTTAQLHYLQRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQL 126

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           +E  S        V    +  K +  + +I+   E+G  A +P++T  T  + +   ++R
Sbjct: 127 LETVSEQNELPLPVTLAIALPKGSGFEEIIRPCTELGATAFQPLLTERTLLKPSQNKLER 186

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +     AAEQ +   LP +  P T    ++       +     T  +   L      ++
Sbjct: 187 WQRIVTEAAEQSERQWLPPVAAPLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSN 246

Query: 187 IP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +P  + +  GPEGG+   E     +  F  P+SLG RILR+ TA   A+A + A+ 
Sbjct: 247 LPAQIVLATGPEGGWTDNEISLAIAKGF-QPVSLGKRILRAVTAPTVALAQINALL 301


>gi|332827614|gb|EGK00356.1| hypothetical protein HMPREF9455_03309 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 233

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 10/234 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            F    L      +   ++  +   VLR KEGD ILL +GK   + ++I           
Sbjct: 6   FFTPDILS---NVELPAEEALHCIKVLRKKEGDEILLTDGKGFFYDAEIMQANPKHCMVN 62

Query: 70  EYQSRSQT--KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             ++  Q      ++Q  F+P K  +R+++  +K+ E+G+  + P++ R+++       R
Sbjct: 63  ILKTIEQPKGWNFNLQIAFAPTKNIDRIEWFAEKATEIGIDRLSPILCRHSERKEIKAQR 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    +SA +Q     LP +    +    +K  + + Q   A      +  L+ ++    
Sbjct: 123 IEKILVSAMKQSQKALLPQLDEMQSFPAFIKQ-EFDGQKFIAHCYPQEKVLLKDIY--KK 179

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             N  ILIGPEG +  EE +      F   +SLG   LR++TAA+ A   +  +
Sbjct: 180 GGNALILIGPEGDFSEEEVKMAIDHGF-KSISLGDSRLRTETAALVACHTLHVL 232


>gi|332201188|gb|EGJ15259.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA47901]
          Length = 247

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAVSPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    ++ A E  G E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSVIVAYEESGKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|329956990|ref|ZP_08297558.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056]
 gi|328523747|gb|EGF50839.1| RNA methyltransferase, RsmE family [Bacteroides clarus YIT 12056]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I++  +   ++  +   VLR++ GD + L +GK   + ++IS            ++  Q 
Sbjct: 9   IQSHTELPEEEAVHAIRVLRLQTGDEVTLTDGKGNFYRAEISTATNKRCLVNILETTPQA 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWSGYLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     +     N +   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPRLNEMTDFNKFISQ-SFNGRKFIAHCYEGEKPLLKDI--VRKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      F  P+SLG   LR++TAA+ A  +V 
Sbjct: 186 GPEGDFSEEEVKKAIENGF-EPISLGRSRLRTETAALVACHIVN 228


>gi|258647970|ref|ZP_05735439.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259]
 gi|260851810|gb|EEX71679.1| RNA methyltransferase, RsmE family [Prevotella tannerae ATCC 51259]
          Length = 255

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 19/250 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +K   V +   I T  +   D+  ++  VLRMKEG+ I++ +GK   + + +S V  K  
Sbjct: 1   MKEFHVFYAPDIATNKELPHDEAQHITKVLRMKEGEEIIITDGKGSFYKAALSLVTNKHC 60

Query: 66  RFKVEYQSRSQT-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             ++  Q  ++   ++ ++   +P K  +R+++ ++K+ E+G+  I  V   +++     
Sbjct: 61  SVQLLSQESARPLWKNKLEIAVAPTKHLDRMEWFVEKATEIGVDQINFVACEFSERKQIK 120

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFAD------------- 169
           ++R+    ISA +Q     LP I    T    + + ++    I                 
Sbjct: 121 IERMNRIAISAMKQSHKAILPQIPEMITFNAFINRPFEGKRYIAHCYNMENICDADSSPT 180

Query: 170 ETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               S +S   L  +        +LIGPEG +   E E   +  F+ P+SLG   LR++T
Sbjct: 181 NASTSIHSSAFLGQLLKGEESTQVLIGPEGDFSMREVEAAMAAGFI-PVSLGNSRLRTET 239

Query: 229 AAVAAMALVQ 238
           AA+ A+ L+ 
Sbjct: 240 AALVAVHLMN 249


>gi|324992255|gb|EGC24177.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK405]
          Length = 250

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDSVKRLARVLDPSQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK  E+G  AI        V     + 
Sbjct: 59  LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGASAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +++      AAEQ     +P I         L       +I+ A E         
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAA 178

Query: 180 KL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            L      ++    +  + GPEGG   +E         V+   LGPRILR++TA + A+ 
Sbjct: 179 TLVQAVRGLSKGDKLLFIFGPEGGLSPDEIAAFDQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|218778356|ref|YP_002429674.1| hypothetical protein Dalk_0499 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759740|gb|ACL02206.1| protein of unknown function DUF558 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 257

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 10/248 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            +  +R +++       +   +G    +   VLR+ +GD ++L +    E++  I   G 
Sbjct: 1   MAETRRFYIEPEQITGDRAFITGQDAKHAKKVLRLAKGDPVILLDNSGLEYMGVILSAGA 60

Query: 64  SIRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
               +VE Q R   +      +    + IKT+++D +++   E+GM   RP     +   
Sbjct: 61  R-DMEVEIQDRRLGATESPLKIDLAMAMIKTSKMDKLLKGVTELGMHGWRPFYASRSVPK 119

Query: 121 HY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSE 175
                   DR +     A +QC+ + LP ++ P + E L   + +++  +VF +++    
Sbjct: 120 VKDPEDRRDRWKKIAAEAVKQCERVRLPDVHAPVSFEELCAISAEYDLGVVFWEKSRTPF 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             + +    +   +V ++IGPEGG+   E   L     V    LGPRILR++TAA+A+ A
Sbjct: 180 QQVLQSRLDSPPKSVLVVIGPEGGFEDHETARLEESGMVHA-GLGPRILRAETAALASCA 238

Query: 236 LVQAICGD 243
           L+QA  GD
Sbjct: 239 LIQAGFGD 246


>gi|160947756|ref|ZP_02094923.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270]
 gi|158446890|gb|EDP23885.1| hypothetical protein PEPMIC_01691 [Parvimonas micra ATCC 33270]
          Length = 242

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 112/244 (45%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F D    +  + K  GD Y+++  VLR+ E + I +       ++  I    K I 
Sbjct: 1   MHRFFTDES-ILDGKVKIYGDDYNHIKKVLRITEDEKIEVVV-LGELYIGNIEICDKYIS 58

Query: 67  F-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +E  S +   +  +  +    K  ++D ++QK+VE+G+  I  V ++        + 
Sbjct: 59  VYNLEKISENTESKIKIHLLQCLAKGEKMDLIVQKAVELGVYDITLVNSKRCIVKFDEKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENS 177
            +  ++R++  +  A++Q   L +P I      + ++     N  +V  +E       + 
Sbjct: 119 ENKKIERLQKISYEASKQSKRLIVPKINELIQFKDIINFVGDNYLLVAYEEDKNISLRDV 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           + ++       ++ ILIG EGG+  EE E L +    + + LG RILR++TA +  ++++
Sbjct: 179 ITRIKEENSCKDIYILIGSEGGFEREEVEFLTNNGAFS-IGLGARILRTETAGINLLSIL 237

Query: 238 QAIC 241
           Q   
Sbjct: 238 QYEF 241


>gi|315613654|ref|ZP_07888561.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315314345|gb|EFU62390.1| RsmE family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 247

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D ++L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVILVFNDGIKRLARVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + A+EQ     +P I         L   D    IV A E    E     
Sbjct: 120 GKKVEKLEKIALGASEQSKRNLVPSIQLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  S   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLEKGAKLLFIFGPEGGLSPAEIESFESKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|149011364|ref|ZP_01832611.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae
           SP19-BS75]
 gi|237649845|ref|ZP_04524097.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI
           1974]
 gi|237820772|ref|ZP_04596617.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147764354|gb|EDK71285.1| hypothetical protein CGSSp19BS75_08137 [Streptococcus pneumoniae
           SP19-BS75]
          Length = 247

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAITGLDTGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|227514619|ref|ZP_03944668.1| protein of hypothetical function DUF558 [Lactobacillus fermentum
           ATCC 14931]
 gi|227087030|gb|EEI22342.1| protein of hypothetical function DUF558 [Lactobacillus fermentum
           ATCC 14931]
          Length = 249

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FVD  L    +     D  H+L  V+R   G  + L       +L+ +     +  
Sbjct: 1   MQRYFVDQALPAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +           V       K   + + ++QK+ E+G   I    +  +      Q 
Sbjct: 61  KVEQDLGGDSELPIKVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNDQR 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               ++R++  T +AAEQ     +P +     L+ LL  +  + ++V  +E+        
Sbjct: 121 QGKKVERLQKITNAAAEQSHRDQIPEVSYVKDLKSLLTVFSFDHRVVAWEESAKQGERAA 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  +    ++  + GPEGG    E ET+ +   V    LGPRILR++TA +  MA 
Sbjct: 181 LATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAG-VVACGLGPRILRTETAPLYLMAA 239

Query: 237 VQAIC 241
           V    
Sbjct: 240 VSYHF 244


>gi|326569446|gb|EGE19506.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis BC8]
          Length = 246

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 18/237 (7%)

Query: 7   LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           + R FVD PL    I           H+   VLR   GD   LF+G  GE+   ++++ K
Sbjct: 1   MPRFFVDTPLTTNLIGQIITLPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIDK 60

Query: 64  S-IRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118
                K++ Y   ++T            + +R+DY IQK+ EMG+  I  + +   Q   
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120

Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +   ++  ++A EQC +  +P I  P  L+  + N     ++V A     + 
Sbjct: 121 KYDRDFKKITHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +  KL       N+++LIG EGG    E +      FV P  +G R+LR++TA V 
Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVV 230


>gi|125717118|ref|YP_001034251.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus sanguinis
           SK36]
 gi|125497035|gb|ABN43701.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 250

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+        +     D   ++  V+R+K GD ++L      + L+++    +   
Sbjct: 1   MQQYFIKGNPQSPLEVT-DKDTAKHMFSVMRLKAGDQVILVFDDGVKRLARVLDPSQQSL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK+ E+G  A+        V     +  
Sbjct: 60  EIVEELADNTELLVQVTIASGFPKGDKLEFITQKATELGACALWGFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +++      AAEQ     +P I         L       +I+ A E          
Sbjct: 120 AKKSEKLEKIAQGAAEQSRRNLIPEIRLFDKKADFLAALTDFDRIIVAYEEAAKVGEAAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      ++    +  + GPEGG   EE         V+   LGPRILR++TA + A+  
Sbjct: 180 LVQAVRGLSKGDKLLFIFGPEGGLSPEEIVAFGQAGAVSA-GLGPRILRAETAPLYALTA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSVLL 243


>gi|332187403|ref|ZP_08389141.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17]
 gi|332012564|gb|EGI54631.1| RNA methyltransferase, RsmE family protein [Sphingomonas sp. S17]
          Length = 247

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 135/239 (56%), Gaps = 7/239 (2%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            RLFVD  L      +  G   HYL  V+R K GD + LF+ + GEWL   + VGK  + 
Sbjct: 13  PRLFVDQILAEG-PIRIDGPAAHYLVSVMRTKVGDPVKLFDDRTGEWLGVAASVGKRDLT 71

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             V  + R +    D+    +P+K  R+D++ +K+ E+G+  + PV+TR T     N +R
Sbjct: 72  LDVTQRLREREAVPDLWLCAAPLKKGRVDWLAEKACELGVARLVPVVTRRTVVDKPNTER 131

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI-A 185
           +R + I AAEQC    LP +  P  L  LL++W     + FADE  G    L  L A+ A
Sbjct: 132 LRAHMIEAAEQCGRTALPQVAEPVKLPALLRDWPEERALFFADENGG----LPALEAMRA 187

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           H    AILIGPEGG+ SEE+E + +LP    + LGPRILR+DTAA AA++L  A  GDW
Sbjct: 188 HQGPAAILIGPEGGFDSEEREAIRALPSAIGIGLGPRILRADTAAAAAVSLWMAAAGDW 246


>gi|71909198|ref|YP_286785.1| hypothetical protein Daro_3586 [Dechloromonas aromatica RCB]
 gi|71848819|gb|AAZ48315.1| 16S rRNA m(3)U-1498 methyltransferase [Dechloromonas aromatica RCB]
          Length = 245

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R +    L      +       +   VLR+  G  ++LF+G+ GE+ + I  + +   F
Sbjct: 4   PRFYCREALSPGAHIELPEPVARHAVRVLRLPPGAPMVLFDGRGGEYPAHIERIERDRVF 63

Query: 68  KVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            V   +       +  +  + +    +++D+ IQK+VE+G+  I PV +R +      + 
Sbjct: 64  AVLGAWCEIECESRLAITLVQALQAGDKMDFTIQKAVELGVRDIVPVESRRSVIRLAGER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSL 178
               +   +    SA EQC    +P + P   LE  L    H   +++ A +        
Sbjct: 124 AAKRVAHWQGVAASACEQCGRNQVPLVAPLEKLEHWLARPSHGELRLMLAPDAE------ 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           + L +I  +  V +LIG EGG   +E        F   + LGPR+LR++T
Sbjct: 178 DTLASIRPVGQVQLLIGAEGGLDPQEVMAARQAGF-QAVRLGPRVLRTET 226


>gi|237709004|ref|ZP_04539485.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457066|gb|EEO62787.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 233

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRS 75
           I +  +   ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   + 
Sbjct: 9   IASNLELPEEEAGHCLRVLRLSIGDEIMLTDGKGCFYKAVISAASGKRCQVKVTEAIPQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
           +     +    +P K  +R ++  +K+ E+G   +  +  RY++      +R+    +SA
Sbjct: 69  KGWNGWLHIAMAPTKNMDRTEWFTEKATEIGFDELSFLNCRYSERKVIKKERIEKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q    T+P +   T     + + D   Q   A    G +  L+ +  +    +  ++I
Sbjct: 129 VKQSLKATMPVLNEMTDFNKFV-SRDFKGQKFIAHCYEGEKFLLKDI--LRSGEDALVMI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           GPEG +  EE     +  F  P+SLG   LR++TAA+ A   +  +
Sbjct: 186 GPEGDFSEEEVAKAIAAGF-QPVSLGKSRLRTETAALVACHTLNLL 230


>gi|282859154|ref|ZP_06268280.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010]
 gi|282588072|gb|EFB93251.1| RNA methyltransferase, RsmE family [Prevotella bivia JCVIHMP010]
          Length = 262

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRF 67
            +V      K Q +   ++  +   VLRMKEGD + L +G    + +++  +   +    
Sbjct: 7   FYVP---NAKAQTELPTEEALHAVRVLRMKEGDELFLMDGVGCFYRAEVVLTSAKRCAYA 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             E   +++T +  +    +P K   R+++M++K+ E+G+  I  +  R+++     +DR
Sbjct: 64  IKETLPQTKTWEGRIHLAIAPTKDMGRIEWMVEKATELGIDEITFLDCRFSERKQIRIDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---------QIVFADETCGSENS 177
           +    ISA +Q      P +    + +  ++  + N           I          + 
Sbjct: 124 IEKIVISAMKQSRKGWKPIVNEMVSFKEFIQTMETNASQQEYSLASFICHCYNEIDKNDF 183

Query: 178 LEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +    ++  +V IL+GPEG +  +E +   +  F   ++LG   LR++TA + A+A+
Sbjct: 184 FSVITEQENLKDDVLILVGPEGDFSIDEVQLALAAGF-QSVTLGESRLRTETAGLNAIAM 242

Query: 237 VQ 238
            Q
Sbjct: 243 TQ 244


>gi|194396708|ref|YP_002038374.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           G54]
 gi|194356375|gb|ACF54823.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 247

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVSGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|119510272|ref|ZP_01629409.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414]
 gi|119465121|gb|EAW46021.1| hypothetical protein N9414_14197 [Nodularia spumigena CCY9414]
          Length = 235

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 13/240 (5%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L+R+ +      +     + +Q HYL  VLR++ GD  +  +GK   WL+++     
Sbjct: 1   MAQLQRIAIAPSQIQENLITLTKEQQHYLRRVLRLRTGDRFIAMDGKGKWWLTQLESEQA 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            +   +E  +        +  + +  K N  D +I+ S E+G+  I P+++  T    + 
Sbjct: 61  QV---LETLTVETELSVAITLMVALPKGNGFDDIIRYSTELGVTCIAPLLSDRTLLNPSP 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R     AAEQ +   +P I  P +    +       + +     C        L
Sbjct: 118 QKLERWRRIATEAAEQSERAFVPTILEPVSFMTAINASQATHRYI-----CEGRGDYPHL 172

Query: 182 HAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +++    IP + I  GPEGG+   E E   +  F  P+SLG RILR+ TA V A+ L+ A
Sbjct: 173 NSLVKTDIPEIIIATGPEGGWTEPEIENAIASGF-QPVSLGRRILRAVTAPVVALTLISA 231


>gi|322390789|ref|ZP_08064299.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           903]
 gi|321142459|gb|EFX37927.1| RsmE family RNA methyltransferase [Streptococcus parasanguinis ATCC
           903]
          Length = 247

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 98/245 (40%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGLASSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEARKL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELIEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L  +D   +IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSITLFEKKADFLAQFDQFDRIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ L  +     +  + GPEGG    E ++  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIQSLTGLEAGCKLLFIFGPEGGLSPAEIKSFTAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSVVT 243


>gi|28211650|ref|NP_782594.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium tetani E88]
 gi|28204092|gb|AAO36531.1| conserved surface protein [Clostridium tetani E88]
          Length = 250

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 10/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV        +     +   ++  VLR+   D +++ N +  E+L +ISY+ K   
Sbjct: 1   MHKFFVPKENISNEKAIILDEDVKHIYKVLRLTTEDEVIINNCEGEEFLGEISYIDKKEV 60

Query: 67  FKVEYQSRSQTKQSDVQ--YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
                +      +S +Q        K N++D ++QK+ E+G+  I PVIT          
Sbjct: 61  IVNIKEKLDINNESSIQVYLFQGMPKANKMDLIVQKNCELGVREITPVITERVVVKQYGG 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--S 177
               +DR+    I +++QC    +P +  P   + LL+       IV   E         
Sbjct: 121 EYKKLDRLEKIAIESSKQCKRTLIPKVNNPVEFKDLLEELKIMDLIVVPYENQQGFGMKK 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        I  + ++IGPEGG+  +E E L  +     ++LGPRILR++TA   A++L+
Sbjct: 181 LITKIEKNKIIKIGVVIGPEGGFEEDEIEELEKIG-ANIITLGPRILRTETAGFTAVSLL 239

Query: 238 QAICGD 243
               GD
Sbjct: 240 MYELGD 245


>gi|332074131|gb|EGI84609.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA41301]
          Length = 247

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             ++  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELIQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAITGLDTGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|254467996|ref|ZP_05081402.1| conserved hypothetical protein TIGR00046 [beta proteobacterium
           KB13]
 gi|207086806|gb|EDZ64089.1| conserved hypothetical protein TIGR00046 [beta proteobacterium
           KB13]
          Length = 247

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R +    +   ++   S D   +L   LR+K  D I+LFNG   ++  ++S + K  +
Sbjct: 2   MNRFYHPDTISAHSEINLSEDASKHLVKSLRLKPSDKIILFNGDGFDYHGEVSDIDKKNV 61

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
           +  V  +  + ++   D+  + S    ++LD++ QK+ E+G+     + T          
Sbjct: 62  KIAVNEKKHNASEAVIDISILQSVTSRDKLDFIFQKNTELGIKNFYLINTERVNFKIPQS 121

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENS 177
                ++ ++   ISA EQ     +P ++     L  L    DH+C+++    T  S ++
Sbjct: 122 KIENRIEHLKKVVISACEQSGRSKIPTVHETILGLNKLTNEDDHSCKLILNPYTDYSLSN 181

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L   + + +  +  ILIGPEGG+   E +   +  F   LSLG R+LR++TA+++  + +
Sbjct: 182 LRN-NDLINKKSFQILIGPEGGFSEAEIKVAENAGF-KSLSLGKRVLRTETASLSIASAI 239

Query: 238 QAICGDW 244
            A+  ++
Sbjct: 240 LALTNNF 246


>gi|149002075|ref|ZP_01827029.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP14-BS69]
 gi|303254708|ref|ZP_07340810.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455]
 gi|303258717|ref|ZP_07344697.1| hypothetical protein CGSSp9vBS293_06299 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261881|ref|ZP_07347827.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263744|ref|ZP_07349666.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae
           BS397]
 gi|303265722|ref|ZP_07351621.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae
           BS457]
 gi|303268575|ref|ZP_07354367.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae
           BS458]
 gi|147759884|gb|EDK66874.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP14-BS69]
 gi|301802477|emb|CBW35235.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302598420|gb|EFL65464.1| 16S rRNA m3U1498 methyltransferase [Streptococcus pneumoniae BS455]
 gi|302636964|gb|EFL67453.1| hypothetical protein CGSSp14BS292_10724 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640218|gb|EFL70673.1| hypothetical protein CGSSpBS293_06299 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641854|gb|EFL72209.1| hypothetical protein CGSSpBS458_09686 [Streptococcus pneumoniae
           BS458]
 gi|302644849|gb|EFL75097.1| hypothetical protein CGSSpBS457_09770 [Streptococcus pneumoniae
           BS457]
 gi|302646782|gb|EFL77007.1| hypothetical protein CGSSpBS397_08024 [Streptococcus pneumoniae
           BS397]
          Length = 247

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|319901365|ref|YP_004161093.1| hypothetical protein Bache_1502 [Bacteroides helcogenes P 36-108]
 gi|319416396|gb|ADV43507.1| protein of unknown function DUF558 [Bacteroides helcogenes P
           36-108]
          Length = 232

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKV-EYQSRS 75
           I+ + +   ++  +   VLR++ GD ++L +G    + ++I +  GK    K+ E   + 
Sbjct: 9   IEIRSELPEEEAAHAIRVLRLQTGDEVMLTDGNGNFYRAEISTATGKRCSVKIIETLPQE 68

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    ISA
Sbjct: 69  PLWNGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILISA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     +       + +     C  +  L     I    +  +LI
Sbjct: 129 IKQSLKARLPKLNEMTDFNNFITRPFEGQKFIAH---CHEDEKLLLKEQIRKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      F+ P+SLG   LR++TAA+ A  ++ 
Sbjct: 186 GPEGDFSEEEVKKALKNGFI-PISLGKSRLRTETAALVACHILN 228


>gi|289167412|ref|YP_003445681.1| hypothetical protein smi_0564 [Streptococcus mitis B6]
 gi|288906979|emb|CBJ21813.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 247

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+K  D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVIIE-DKETSKHMFQVMRLKGEDEVTLVFDDGIKRLARVLDVENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELTDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P +         L  +D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSVKLFEKKADFLAQFDQFDSIIVAYEESAKEGEVAV 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +A    +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLAKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|322373766|ref|ZP_08048301.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150]
 gi|321277138|gb|EFX54208.1| RNA methyltransferase, RsmE family [Streptococcus sp. C150]
          Length = 247

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+              D   ++ +V+R+ E D ++L      + L++++     + 
Sbjct: 1   MQQYFIRG-QVENPVIIKDKDTVKHMFNVMRLTEDDQVVLVFEDGIKRLARVTDRENHVF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+ + QK+ E+G  AI        V+    +  
Sbjct: 60  EVIEDLTDNVEMPVSVTIASGFPKGDKLELVTQKATELGAQAIWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
               D++    + AAEQ     +P +         L    +  +I  A E       L  
Sbjct: 120 AKKEDKLAKIALGAAEQSKRNHVPEVRLFEEKGEFLSELANFDKIFIAYEETAKAGELAT 179

Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  + H   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELAQVEHGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|329962100|ref|ZP_08300111.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057]
 gi|328530748|gb|EGF57606.1| RNA methyltransferase, RsmE family [Bacteroides fluxus YIT 12057]
          Length = 232

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQS 80
           +   ++  +   VLR++ GD + L +G    + ++IS       F   VE   +     +
Sbjct: 14  ELPEEEAAHAVRVLRLQAGDEVTLTDGNGNFYRAEISTATNKRCFVNIVETLPQPALWDA 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q  
Sbjct: 74  HLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERISKILVSAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
              LP +   T     +   ++    I    E  G +  L+ +  +    +  +LIGPEG
Sbjct: 134 KARLPKLNEMTDFNKFITQPFEGQKFIAHCYE--GEKPLLKDI--LHKGEDALVLIGPEG 189

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  EE +T  +  ++ P+SLG   LR++TAA+ A  ++ 
Sbjct: 190 DFSEEEVKTALANGYI-PISLGRSRLRTETAALVACHILN 228


>gi|76787751|ref|YP_330523.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae
           A909]
 gi|77405013|ref|ZP_00782113.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           H36B]
 gi|77411955|ref|ZP_00788285.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           CJB111]
 gi|76562808|gb|ABA45392.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           A909]
 gi|77161981|gb|EAO72962.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           CJB111]
 gi|77176307|gb|EAO79076.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           H36B]
          Length = 246

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 12/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+         +   D   ++ +V+R+ E D ++L      + L+K+        
Sbjct: 1   MQQYFVNGKADDFVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDTIKRLAKVVDSSAHRF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +      V       K ++LD + QK+ E+G  AI        V+    +  
Sbjct: 60  QILEELDSNVEMPVQVTIASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               D++    + AAEQ     LP +             +   +I  A E    E     
Sbjct: 120 AKKEDKLAKIAMGAAEQSKRNRLPQVRLFEKKADFQAELNGFDKIFIAYEESAKEGEMSA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  +     +  + GPEGG   +E         +  + LGPRI+R++TA + A+++
Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEAGAIK-VGLGPRIMRTETAPLYALSV 238

Query: 237 VQA 239
           +  
Sbjct: 239 ISY 241


>gi|307707510|ref|ZP_07643992.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|307616462|gb|EFN95653.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
          Length = 247

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+ +  V     
Sbjct: 1   MQQYFVKGNATSPVIIE-DKETSKHMFQVMRLKEDDEVTLVFDDGVKRLAHVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D   +IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSIKLFEKKGDFLAQLDQFDRIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ ++ +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVNGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|148990495|ref|ZP_01821636.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924253|gb|EDK75349.1| hypothetical protein CGSSp6BS73_12461 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 247

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|298209191|ref|YP_003717370.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus
           HTCC2559]
 gi|83849118|gb|EAP86987.1| hypothetical protein CA2559_13143 [Croceibacter atlanticus
           HTCC2559]
          Length = 235

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 6/239 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++  + +             D+  ++  VLR K GD + + NGK   +  +I     +  
Sbjct: 1   MQLFYQEHIDNKSINVHFERDESKHIVKVLRKKAGDTLHVTNGKGWLFTVEIISDNHNKC 60

Query: 67  FKVEYQSRSQTKQS-DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             V  + + Q  Q   +  + +P K  +R+++ ++K+ E+G+  I P++  +++      
Sbjct: 61  VGVITEKKYQESQQLYLHVLIAPTKMNDRMEWFLEKATEIGISEITPILCDHSERKTIKT 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DR      SA +Q   L LP +   T    ++       + V   E       ++     
Sbjct: 121 DRFERVLQSAMKQSLQLHLPKLNALTPFSEVIGQNIEGQKFVAHCENDKKRLPMQNEITS 180

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
                + ILIGPEG +  EE +      ++ P++LG   LR++TA + A  +      D
Sbjct: 181 ---NRLTILIGPEGDFSLEEIQQALDYNWL-PVTLGNTRLRTETAGIVATTIANLKFTD 235


>gi|282896925|ref|ZP_06304931.1| conserved hypothetical protein [Raphidiopsis brookii D9]
 gi|281198334|gb|EFA73224.1| conserved hypothetical protein [Raphidiopsis brookii D9]
          Length = 262

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L+RL +      + Q   +  Q HYL  VLR+++GD  +  +G    WL+K++    
Sbjct: 1   MAQLQRLTIQISQLQQNQVLLTPKQKHYLLRVLRLQDGDQFISMDGMGKWWLTKLTADTA 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            I   ++  +        +  I +  K N  D +++ S E+G+ +I PV++  T    + 
Sbjct: 61  QI---LQTLTPKTELPLSITLILALPKGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSP 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R     AAEQ +   +P I  P      L  + +    +   E  GS   L  +
Sbjct: 118 QKLERWRRIAKEAAEQSERAFVPTILEPVAFSTALSEYSNFKCYIC--EARGSYPHLINI 175

Query: 182 HAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             I    I  V I IGPEGG+   E  T     F  P+SLG RILR+ TA + A++L+ A
Sbjct: 176 INIPLKDIKEVVIAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSLIAA 234

Query: 240 IC 241
            C
Sbjct: 235 AC 236


>gi|149020848|ref|ZP_01835377.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483305|ref|ZP_02708257.1| protein YqeU [Streptococcus pneumoniae CDC1873-00]
 gi|225857376|ref|YP_002738887.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           P1031]
 gi|147930489|gb|EDK81472.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043230|gb|EDT51276.1| protein YqeU [Streptococcus pneumoniae CDC1873-00]
 gi|225726153|gb|ACO22005.1| protein YqeU [Streptococcus pneumoniae P1031]
          Length = 247

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          + + +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-NKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E  G E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLTQLDQFDSIIVAYEESGKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|332199792|gb|EGJ13867.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA41317]
          Length = 247

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          + + +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-NKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDFIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|295695881|ref|YP_003589119.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912]
 gi|295411483|gb|ADG05975.1| protein of unknown function DUF558 [Bacillus tusciae DSM 2912]
          Length = 247

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 9/230 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++R  V     +       G+  H++A V+RM  GD + + +G    W + I  VG   +
Sbjct: 1   MQRYLVPPSCFVGDTAVLRGEDAHHIARVMRMVPGDRVEVGDGSGTVWTAVIESVGAGEV 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +E         + ++  +    K +++D ++QK+ E+G+  + PV    +       
Sbjct: 61  HLSLEDSLEEDGEARLELVLLQGLPKHDKMDLIVQKATELGVARVIPVAAARSVVRYQED 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R R     AAEQ     +P I  P +     +        +  DE+       
Sbjct: 121 QEIRRLQRWRRIAKEAAEQAKRSRIPEIVQPVSAAEAWRWAAQADVALIFDESRRGRPLA 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             L     +  +   +GPEGG+   E +   SL  V P+ LGPRILR++T
Sbjct: 181 TALAGHPGVGRIFFAVGPEGGWDPGEVDDATSLG-VEPVHLGPRILRTET 229


>gi|187477367|ref|YP_785391.1| 16S ribosomal RNA methyltransferase RsmE [Bordetella avium 197N]
 gi|115421953|emb|CAJ48473.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 244

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R F D PL    +        H+   VLR+++G  I+LF+G+ GE+ +++   GK+  
Sbjct: 3   LPRFFCDTPLAAGQRLALPEALAHHAIRVLRLRDGAVIVLFDGRGGEYPARLEIEGKTGY 62

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
            ++ E+ +R       +         +++D++I+K+VE+G  A+ P+  + +        
Sbjct: 63  AQLAEHVAREAELPGRITLAQGLPSGDKMDWIIEKAVELGAAAVAPIAAQRSVLQLSGPR 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +   R    +AAEQC    L  +  P++L   L       +++   E         
Sbjct: 123 LEKRLSHWRRIAQAAAEQCGRNRLTQVSAPSSLREWLAQPAQGARVMCHPEAADDLPGW- 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L +      + +L+GPEGG+  E +        V  + LG R+LR++TA +A +A V A
Sbjct: 182 -LASQPAPEALTLLVGPEGGWSEE-ELAAARAAGVASVRLGSRVLRTETAGLALIASVTA 239

Query: 240 ICG 242
           + G
Sbjct: 240 LLG 242


>gi|326559952|gb|EGE10350.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 46P47B1]
 gi|326565441|gb|EGE15613.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 103P14B1]
 gi|326572795|gb|EGE22781.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis BC7]
 gi|326573982|gb|EGE23931.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis CO72]
 gi|326577050|gb|EGE26945.1| ribosomal RNA small subunit methyltransferase E [Moraxella
           catarrhalis 101P30B1]
          Length = 246

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 18/237 (7%)

Query: 7   LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R FVD PL    I           H+   VLR   GD   LF+G  GE+   ++++  
Sbjct: 1   MPRFFVDTPLTTNLIGQIIALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHK 60

Query: 63  KSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118
           KS   K++ Y   ++T            + +R+DY IQK+ EMG+  I  + +   Q   
Sbjct: 61  KSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTSDRCQAHL 120

Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +   ++  ++A EQC +  +P I  P  L+  + N     ++V A     + 
Sbjct: 121 KYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELKLVLA--LSENN 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +  KL       N+++LIG EGG    E +      FV P  +G R+LR++TA V 
Sbjct: 179 PTFNKL----VPKNISLLIGAEGGLSPREIDLAIHHGFV-PWRIGERVLRTETAPVV 230


>gi|167765138|ref|ZP_02437251.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC
           43183]
 gi|167696766|gb|EDS13345.1| hypothetical protein BACSTE_03524 [Bacteroides stercoris ATCC
           43183]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           I++Q +   ++  +   VLR++ GD + L +GK   + ++IS            ++  Q 
Sbjct: 9   IQSQAELPEEEAAHAVRVLRLQTGDEVTLTDGKGNFYRAEISTATTKRCLVNILETIPQA 68

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA
Sbjct: 69  PLWSGHLHIAMAPTKNMDRTEWFAEKATEIGFDELTFLNCRFSERKIIKTERIAKILVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            +Q     LP +   T     +       +   A    G +  L+ +  +    +  +LI
Sbjct: 129 IKQSLKARLPRLNGMTDFNRFISQ-PFEGRKFIAHCYEGEKPLLKDV--VRKGEDALVLI 185

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           GPEG +  EE +      F  P+SLG   LR++TAA+ A  ++ 
Sbjct: 186 GPEGDFSEEEVKQAIENGF-EPISLGRSRLRTETAALVACHILN 228


>gi|331265876|ref|YP_004325506.1| hypothetical protein SOR_0503 [Streptococcus oralis Uo5]
 gi|326682548|emb|CBZ00165.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 247

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSATSPITIE-DKETSKHMFQVMRLKEDDEVTLVFEDGIKRLARVLDVENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++   T+ AAEQ     +P I         L   D    IV A E    E     
Sbjct: 120 GKKVEKLEKITLGAAEQSKRNLVPSIKLFEKKADFLAQLDQFDSIVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|255533946|ref|YP_003094318.1| hypothetical protein Phep_4065 [Pedobacter heparinus DSM 2366]
 gi|255346930|gb|ACU06256.1| protein of unknown function DUF558 [Pedobacter heparinus DSM 2366]
          Length = 234

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEY 71
            P         + ++  +   VLR+  G  + L +G  G + ++I+   K       +E 
Sbjct: 6   TPDIGSDVYVLNEEESRHCTRVLRLGTGAVVYLIDGIGGLYKAEITGETKRQVNLRIIEV 65

Query: 72  QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY 130
           Q     ++  +    +P K  +RL++ ++K+ E+G+  I PVI   ++      DR+   
Sbjct: 66  QKEYHKRRHYLHIAVAPTKNIDRLEWFLEKATEIGIEEITPVICDRSERKVVKEDRLNKV 125

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
             +A +Q      P + P  +L   LK  + + +++       +   +  +  +    + 
Sbjct: 126 ITAAVKQSLQAYHPRLNPQISLSAFLKQKNDSLKMIAHCVDAAARQYISDV--VKPAGSY 183

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            ILIGPEG +  +E E      +  PL+LG   LR++TAA+AA 
Sbjct: 184 TILIGPEGDFTGQEIEMALQSGY-KPLTLGNTRLRTETAALAAC 226


>gi|148997824|ref|ZP_01825388.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575040|ref|ZP_02721003.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|307068392|ref|YP_003877358.1| hypothetical protein SPAP_1772 [Streptococcus pneumoniae AP200]
 gi|147756323|gb|EDK63365.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578834|gb|EDT99362.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
 gi|306409929|gb|ADM85356.1| Uncharacterized protein conserved in bacteria [Streptococcus
           pneumoniae AP200]
          Length = 247

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          + + +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-NKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|325105650|ref|YP_004275304.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145]
 gi|324974498|gb|ADY53482.1| protein of unknown function DUF558 [Pedobacter saltans DSM 12145]
          Length = 236

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 6/234 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +       +     + ++  + + VLR+K GD I L +G  G +L +I     K  +  
Sbjct: 4   FYTPDLNFEENVYVLNEEESRHCSKVLRLKIGDRIHLVDGIGGFYLGEIIEDHPKRTKLT 63

Query: 69  VEYQSRSQTK-QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +  + +   K    +    +P K  +R+++ ++K+ E+G+  + PVI  +++      +R
Sbjct: 64  IVSKEKDFNKVAFHLHIAIAPTKNIDRIEWFLEKATEIGIQEVTPVICEHSERKDVKTER 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    +SA +Q     LP +  P T + L+ +   +     A      +  +    +   
Sbjct: 124 LEKIMVSAMKQSLKAYLPKLNKPQTFKSLISSVGSDVHKYIAHCIPTEKREIA--DSFKR 181

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                ILIGPEG +  +E +      FV P++LG   LR++TAA+ A   +  +
Sbjct: 182 EEKYLILIGPEGDFSEKEVQIALENGFV-PITLGKSRLRTETAALQACFEINYL 234


>gi|227529148|ref|ZP_03959197.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350992|gb|EEJ41283.1| protein of hypothetical function DUF558 [Lactobacillus vaginalis
           ATCC 49540]
          Length = 251

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 14/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R F+D       +     +  H+L  VLR   G    L       +L+++  +  G  
Sbjct: 1   MQRYFIDQSKTAG-KVILPEEVAHHLVTVLRAAVGTKFELVMADHQAYLAELISITPGNV 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   +E   +               K   + + ++QK  E+G   I       +      
Sbjct: 60  IAKLIENLGKDSELPVKTILACGLPKTKEKPELIVQKGTELGADKIVFFEAERSISHWNS 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           Q     + R++    +AAEQ      P I    +L+ LL N+    ++V  +E+     S
Sbjct: 120 QKQPRKIARLQKIADAAAEQSHRNVKPQIEYCPSLKQLLANYPATIRLVAWEESAKEGES 179

Query: 178 LEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                A+A +    ++  + GPEGG  S E   +     + P+  GPRILR++TA +  +
Sbjct: 180 SRLFQALAKLQTGDSILAIFGPEGGLSSAEVTIMEENG-IIPVGFGPRILRTETAPLYFL 238

Query: 235 ALVQAIC 241
           A V  + 
Sbjct: 239 ATVSFVT 245


>gi|148994979|ref|ZP_01823957.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488515|ref|ZP_02712714.1| protein YqeU [Streptococcus pneumoniae SP195]
 gi|147926916|gb|EDK77963.1| hypothetical protein CGSSp9BS68_00352 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572849|gb|EDT93377.1| protein YqeU [Streptococcus pneumoniae SP195]
 gi|332072601|gb|EGI83084.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA17570]
          Length = 247

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLTQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|257059193|ref|YP_003137081.1| hypothetical protein Cyan8802_1323 [Cyanothece sp. PCC 8802]
 gi|256589359|gb|ACV00246.1| protein of unknown function DUF558 [Cyanothece sp. PCC 8802]
          Length = 239

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 10/234 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RL ++    +      + +Q HYL  VLR+K GD  +  +G+   +L+++      I 
Sbjct: 1   MYRLVIESIQTLDQSVSLTPEQQHYLKRVLRLKNGDRFVAMDGQGKSYLAQLEEDSAKI- 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124
             ++           +  + +  K N  + +++   E+G+  + P+I++ T  + + + +
Sbjct: 60  --LQNLKECTELPLAITLMVALPKGNGFEEIVRCCTELGITTLIPIISQRTLLKPSPHKL 117

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSENSLEKLH 182
           +R R     A EQ +   +P I  P      L+N D   + + +         + L  L 
Sbjct: 118 ERWRKIATEAGEQSERQLIPTIVDPIVFNEALRNIDKIPSDRYICVTRKKA-HHLLTHLS 176

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             +  P + I  G EGG+  EE ET  +  F  P++LGPRILR+ TA + A++L
Sbjct: 177 ETSQNP-LVIATGCEGGWTPEEIETAIAFGF-QPVTLGPRILRAVTAPIVALSL 228


>gi|225859537|ref|YP_002741047.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           70585]
 gi|225720580|gb|ACO16434.1| protein YqeU [Streptococcus pneumoniae 70585]
          Length = 247

 Score =  218 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A+  
Sbjct: 180 LLQAVSGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALTA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|169829246|ref|YP_001699404.1| hypothetical protein Bsph_3794 [Lysinibacillus sphaericus C3-41]
 gi|168993734|gb|ACA41274.1| UPF0088 protein [Lysinibacillus sphaericus C3-41]
          Length = 245

 Score =  218 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 19/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           ++R F++  +      + SG+   ++  V+RMK+GD I++   ++   + KI+ + G  +
Sbjct: 1   MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIIVV-AQNIAHICKITGFEGDEV 56

Query: 66  RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 ++  S      +       K ++L+ + QK+ E+GM A+ P     +      +
Sbjct: 57  AIDATGETIPSSELPIQITVACGLPKGDKLELITQKATELGMFALLPFEAERSIVKWDKK 116

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R++     AAEQ     +P +Y P T + LL++ D    +  ADE        
Sbjct: 117 KGAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLQDIDQFDAVFIADEEDAKAEKR 176

Query: 179 ------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                  KL     + ++ I+ GPEGG   +E E L      T +SLGPRILR++TA + 
Sbjct: 177 TRFADKLKLVHEKKLTSILIIFGPEGGISRKEAEALLQAGAQT-MSLGPRILRAETAPLY 235

Query: 233 AMALVQAIC 241
           A++ +    
Sbjct: 236 ALSAISYEF 244


>gi|168494311|ref|ZP_02718454.1| protein YqeU [Streptococcus pneumoniae CDC3059-06]
 gi|225855212|ref|YP_002736724.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           JJA]
 gi|183575734|gb|EDT96262.1| protein YqeU [Streptococcus pneumoniae CDC3059-06]
 gi|225723849|gb|ACO19702.1| protein YqeU [Streptococcus pneumoniae JJA]
          Length = 247

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGSKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|75911238|ref|YP_325534.1| 16S ribosomal RNA methyltransferase RsmE [Anabaena variabilis ATCC
           29413]
 gi|75704963|gb|ABA24639.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 235

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            S L+R+ +      + Q   +  Q HYL  VLR++EGD  ++ +G    WL++++    
Sbjct: 1   MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLARLTEEQA 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            +   +E  +        +  + +  K +  D +++   E+G+  I PV++  T    + 
Sbjct: 61  QV---LEELAVKTELPVAITLMIALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPSP 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R     AAEQ +   +P I  P      + N     + +   E  G    L+ L
Sbjct: 118 QKLERWRRIAAEAAEQSERAFVPTILEPVAFSDAVNNVTAFHRYIC--EARGEYVHLQNL 175

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                   + I IGPEGG+  +E E   +  F  P+SLG RILR+ TA + A++L+ A C
Sbjct: 176 LTDISGE-IVIAIGPEGGWTDKELEEAVTFGF-QPVSLGGRILRAVTAPLVALSLISAAC 233


>gi|149280553|ref|ZP_01886669.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39]
 gi|149228668|gb|EDM34071.1| hypothetical protein PBAL39_05663 [Pedobacter sp. BAL39]
          Length = 234

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEY- 71
            P    T+   + ++  +   VLR+  GD + L +G+ G + ++I   GK  ++ +V + 
Sbjct: 6   TPDIDATEYLLNEEESKHCLKVLRLGVGDVVNLIDGRGGFYEAEIIEAGKRNVKLRVTHA 65

Query: 72  QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY 130
           +   Q +   +    +P K  +RL++ ++K+ E+G+  I P++   ++      DR+   
Sbjct: 66  RQEFQKRNHHLHIAIAPTKNIDRLEWFLEKATEIGIDEITPLLCERSERKIVKEDRLFKV 125

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
             SA +Q      P + P T++   L+  +   +++           + ++  I      
Sbjct: 126 ITSAVKQSLQAYHPVLNPLTSMSDFLRQENDTFKMIAHCIDGVPREYISEV--IQPQGRY 183

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            ILIGPEG +  +E +      +  PL+LG   LR++TAA+AA 
Sbjct: 184 TILIGPEGDFSEKEIQHALQSGY-KPLTLGNTRLRTETAALAAC 226


>gi|317057269|ref|YP_004105736.1| hypothetical protein Rumal_2627 [Ruminococcus albus 7]
 gi|315449538|gb|ADU23102.1| protein of unknown function DUF558 [Ruminococcus albus 7]
          Length = 241

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+            G    ++   LRM+ GD + +   +  ++  ++  V     
Sbjct: 1   MPRFFVNKEDINGDSAVVRGADAVHIGRSLRMRLGDELTVC-CEGKDYTCRLDSVSDEQC 59

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +     S      V    +  K+++L+ ++QK+VE+G   I PV+T         +
Sbjct: 60  GLAVLSVSEGSGEPTVRVTLYQAVPKSDKLELIVQKAVELGAAEIVPVLTSRCVSRPDEK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           +     +R+    + AA+QC    +P +    + E   K    +   +   E  G+  S 
Sbjct: 120 SYRKKRERLNKIALEAAKQCGRSIVPTVGDIISAEECAKRLGEHELGLICYEKGGAPLS- 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     ++ I IG EGG+   E +   +      + +GPRI+R +TA +AA+A+V 
Sbjct: 179 --ETVGRECRDIGIFIGSEGGFDEAEVDKCRAEG-AKVIGMGPRIMRCETAPLAAIAVVM 235

Query: 239 AICG 242
           ++ G
Sbjct: 236 SLTG 239


>gi|307705458|ref|ZP_07642313.1| RNA methyltransferase family protein [Streptococcus mitis SK597]
 gi|307620993|gb|EFO00075.1| RNA methyltransferase family protein [Streptococcus mitis SK597]
          Length = 247

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGIAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVETRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGARQIWAFPADWSVAKWDDKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P +         L   D   ++V A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSVTLFEKKAAFLAQLDQFDRVVVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|223934148|ref|ZP_03626091.1| protein of unknown function DUF558 [Streptococcus suis 89/1591]
 gi|223897189|gb|EEF63607.1| protein of unknown function DUF558 [Streptococcus suis 89/1591]
          Length = 248

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F++          +  D   ++  V+R++  + I+L      + L+++        
Sbjct: 1   MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDDGIKRLARVVDSQNQSV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  S +      V       K ++L+++ QK+ E+GM A+        V+    +  
Sbjct: 61  EIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKL 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----N 176
               +++      AAEQ     +P +         L       QI+ A E    E    N
Sbjct: 121 GKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLAGFDQIILAYEEAAKEGEQAN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ L  +    +V +++GPEGG   EE         V    LGPRILR++TA + A++ 
Sbjct: 181 LVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSA 239

Query: 237 VQAIC 241
           +    
Sbjct: 240 ISYAT 244


>gi|198274982|ref|ZP_03207514.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135]
 gi|198272429|gb|EDY96698.1| hypothetical protein BACPLE_01141 [Bacteroides plebeius DSM 17135]
          Length = 233

 Score =  218 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I    +   ++  +   VLR+  G+ I L +GK   + + IS    K    KV  ++  +
Sbjct: 9   IAQTMELPEEEAGHCLRVLRLGVGEEITLTDGKGCFYRAVISAATQKRCVVKVVEKTEQE 68

Query: 77  T-KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K  +R++++ +K+ E+G   +  +  R+++      +RV    +SA
Sbjct: 69  PFWKGHLHLALAPTKNMDRMEWLAEKATEIGFDELTFLNCRFSERKVIKTERVEKIVVSA 128

Query: 135 AEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q      P +   T     ++  +     I    E  G +  L  +  +    +  +L
Sbjct: 129 VKQSLKARKPVVNEMTDFRRFMEREFTGQKFIAHCYE--GEKPLLRDV--LRKDEDAVVL 184

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           IGPEG +  EE        F   +SLG   LR++TAA+ A+ L+ 
Sbjct: 185 IGPEGDFSPEEVALAAEKGF-QAVSLGKSRLRTETAALVAVHLMN 228


>gi|293384704|ref|ZP_06630559.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712]
 gi|293387404|ref|ZP_06631959.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613]
 gi|312908310|ref|ZP_07767274.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           512]
 gi|312910616|ref|ZP_07769458.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           516]
 gi|291078011|gb|EFE15375.1| RNA methyltransferase, RsmE family [Enterococcus faecalis R712]
 gi|291083195|gb|EFE20158.1| RNA methyltransferase, RsmE family [Enterococcus faecalis S613]
 gi|310625724|gb|EFQ09007.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           512]
 gi|311289164|gb|EFQ67720.1| RNA methyltransferase, RsmE family [Enterococcus faecalis DAPTO
           516]
          Length = 245

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D+  L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDHCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|22538104|ref|NP_688955.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae
           2603V/R]
 gi|25011993|ref|NP_736388.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus agalactiae
           NEM316]
 gi|76799724|ref|ZP_00781818.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
 gi|77412896|ref|ZP_00789100.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           515]
 gi|22535010|gb|AAN00828.1|AE014280_20 conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           2603V/R]
 gi|24413536|emb|CAD47614.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76584921|gb|EAO61585.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
 gi|77161036|gb|EAO72143.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           515]
          Length = 246

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 12/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+         +   D   ++ +V+R+ E D ++L      + L+K+        
Sbjct: 1   MQQYFVNGEAGAYVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +      V       K ++LD++ QK+ E+G  AI        V+    +  
Sbjct: 60  QILEELDNNVEMPVQVTIASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
               D++    + AAEQ     LP +                 +I  A E    E  L  
Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELAGFDKIFIAYEESAKEGELSA 179

Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  +     +  + GPEGG   +E      +  +  + LGPRI+R++TA + A+++
Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSV 238

Query: 237 VQA 239
           +  
Sbjct: 239 ISY 241


>gi|169834515|ref|YP_001695156.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168997017|gb|ACA37629.1| conserved hypothetical protein [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 247

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKEASKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|229545442|ref|ZP_04434167.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX1322]
 gi|229549686|ref|ZP_04438411.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC
           29200]
 gi|307268138|ref|ZP_07549525.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248]
 gi|307275914|ref|ZP_07557047.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134]
 gi|307277697|ref|ZP_07558783.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860]
 gi|307295909|ref|ZP_07575741.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411]
 gi|312900878|ref|ZP_07760172.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470]
 gi|312902754|ref|ZP_07761958.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635]
 gi|312951285|ref|ZP_07770186.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102]
 gi|229305166|gb|EEN71162.1| protein of hypothetical function DUF558 [Enterococcus faecalis ATCC
           29200]
 gi|229309358|gb|EEN75345.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           TX1322]
 gi|306496240|gb|EFM65819.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0411]
 gi|306505576|gb|EFM74760.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0860]
 gi|306507244|gb|EFM76381.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2134]
 gi|306515528|gb|EFM84056.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4248]
 gi|310630721|gb|EFQ14004.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0102]
 gi|310633808|gb|EFQ17091.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0635]
 gi|311291977|gb|EFQ70533.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0470]
 gi|315028901|gb|EFT40833.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4000]
 gi|315034530|gb|EFT46462.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0027]
 gi|315152591|gb|EFT96607.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0031]
 gi|315157276|gb|EFU01293.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0043]
 gi|315159889|gb|EFU03906.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0312]
 gi|315161371|gb|EFU05388.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0645]
 gi|315163668|gb|EFU07685.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1302]
 gi|315169384|gb|EFU13401.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1342]
 gi|315174316|gb|EFU18333.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1346]
 gi|315576685|gb|EFU88876.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0630]
 gi|329568734|gb|EGG50534.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1467]
          Length = 245

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|315147638|gb|EFT91654.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX4244]
          Length = 245

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPNVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|301301218|ref|ZP_07207374.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851217|gb|EFK78945.1| RNA methyltransferase, RsmE family [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 243

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 15/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R F D    I T+ + + + Y ++  VLRMK GD   L +  +     +I+ +  GK+
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHVIKVLRMKVGDAFELVDDAEVVHKMEITKIEDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE         S+V       K ++ D+++QK  EMG       I  Y+      +
Sbjct: 59  EATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWDRK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   + R++    SAAEQ     +P +     L+ +  +++ N   + A E    +   
Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKDI--DFEKNDARIVAYEESAKKGES 176

Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             L  I      ++  + GPEGG   +E E L +  F+    LGPRI+R++TA +  +A 
Sbjct: 177 GNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLAS 235

Query: 237 VQAIC 241
           +    
Sbjct: 236 LSFAL 240


>gi|197116640|ref|YP_002137067.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter bemidjiensis
           Bem]
 gi|197086000|gb|ACH37271.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 246

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  F+            +G+ Y ++A VLR+K+G  + L    D      +  VG KS+
Sbjct: 1   MRSFFLGDNAICGDSVTITGELYRHMARVLRIKQGSEVELIEDGDSRHRGTVEEVGAKSL 60

Query: 66  RFKVEYQSRSQTKQS--DVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYT 117
             ++   +    ++    +  +    K  +LD ++QK  E+G+  +      R V+    
Sbjct: 61  TVRISASAAPAAEEPGLRITLLQGMPKGEKLDLILQKCTELGVAEVVAFDAARSVVKLRG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             +   + R       AA Q    + P +    TL  +L +  H  +++   E       
Sbjct: 121 DRSATRLARYEKIVREAARQSGRRSAPKVALGGTLADVLADSHHEVKLLL-YEGEEKTTL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                A     +VA+++GPEGG   EE     +  F TP++LG RILR++TA +A ++++
Sbjct: 180 HGCFGAFEAPESVAVVVGPEGGLAPEEVRQALAAGF-TPVTLGKRILRTETAGLAMLSIL 238

Query: 238 QAICGD 243
           Q   GD
Sbjct: 239 QFHWGD 244


>gi|15901610|ref|NP_346214.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           TIGR4]
 gi|111657308|ref|ZP_01408070.1| hypothetical protein SpneT_02001479 [Streptococcus pneumoniae
           TIGR4]
 gi|116515693|ref|YP_817025.1| hypothetical protein SPD_1572 [Streptococcus pneumoniae D39]
 gi|149006564|ref|ZP_01830263.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae
           SP18-BS74]
 gi|14973278|gb|AAK75854.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
 gi|116076269|gb|ABJ53989.1| conserved hypothetical protein TIGR00046 [Streptococcus pneumoniae
           D39]
 gi|147761862|gb|EDK68825.1| hypothetical protein CGSSp18BS74_02206 [Streptococcus pneumoniae
           SP18-BS74]
 gi|332072939|gb|EGI83420.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           pneumoniae GA17545]
          Length = 247

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|332364548|gb|EGJ42319.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK355]
          Length = 250

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+K GD + L      + L ++    +  
Sbjct: 1   MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKAGDQVTLVFDDGVKRLVQVLDPSQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK  E+G  A+        V     + 
Sbjct: 59  LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGACALWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L       +I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAALADFDRIIVAYEESAKEGETA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG   +E         V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLESGAKVLFIFGPEGGLSPDEIVAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|190571358|ref|YP_001975716.1| hypothetical protein WPa_0963 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018754|ref|ZP_03334562.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357630|emb|CAQ55071.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995705|gb|EEB56345.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 231

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 8/228 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           RL+V+  L           Q HY+ +V+R+K+ DNI LFNGKDGEWL ++  +  KS + 
Sbjct: 5   RLYVEEALSQNVSLALHPRQSHYIYNVMRLKKHDNIYLFNGKDGEWLGEVVNISSKSTKI 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            ++ +++ Q  + ++    + +K+  L  +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  IIKERTKQQQHEKNLYLYCALVKSGALSNIVRQATEMGVTCIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ    ++P I+ P     L  + + N   V  DET   +   + L      
Sbjct: 125 KLQAIEAAEQSGRTSIPQIFLPINFCELSDSQNKN--FVLCDETGEGQPPNKVL---KGK 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            NVAI++GPEGG+ S E ++     F   LSLG RILR DTA VAA+ 
Sbjct: 180 KNVAIIVGPEGGFSSCELDSA--NKFCQKLSLGKRILRVDTAVVAALT 225


>gi|312867956|ref|ZP_07728160.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis
           F0405]
 gi|311096360|gb|EFQ54600.1| RNA methyltransferase, RsmE family [Streptococcus parasanguinis
           F0405]
          Length = 247

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGLASSPITIE-DKETSKHMFQVMRVKEEDEVTLVFDDGIKRLARVVNVEGRQL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELDDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D   +IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPSITLFEKKSDFLAQLDQFDRIVVAYEESAKEGEVAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ L  +     + ++ GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIQSLTGLEAGCKLLLIFGPEGGLSPAEIESFTAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSVVT 243


>gi|221632371|ref|YP_002521592.1| hypothetical protein trd_0341 [Thermomicrobium roseum DSM 5159]
 gi|221155488|gb|ACM04615.1| conserved hypothetical protein TIGR00046 [Thermomicrobium roseum
           DSM 5159]
          Length = 265

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIR 66
           R FV   L +  +        H L  VLR++ GD +LL +G+  ++++++  +   +++ 
Sbjct: 7   RFFVTEHLELGARVTLPRRVSHQLVRVLRLRPGDRVLLCDGRAIDFVAELIELDPERTVA 66

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
             V+ Q         +  + + ++ +  D +++K+ E+G+  I P+ T+ T       + 
Sbjct: 67  VLVDAQPARPLPPPPIVLLQALLRHDHFDLVVEKATELGIVRIVPLHTQRTVVHLALRDV 126

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R +   + A+EQC   TLP I  P+TL+  L        +VF +     E     
Sbjct: 127 TQRLARWQRIAMEASEQCGRGTLPEIDTPSTLDRALATVRTARLLVFWE---APEAEAIA 183

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             + +    V + +GPEGG+ +EE             SLGP ILR++TAA++ +A VQA 
Sbjct: 184 HASFSPDQTVTVAVGPEGGWTAEEIALFRRHGAEFR-SLGPLILRAETAAISGIAAVQAR 242

Query: 241 C 241
            
Sbjct: 243 T 243


>gi|299138336|ref|ZP_07031515.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8]
 gi|298599582|gb|EFI55741.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX8]
          Length = 235

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 10/228 (4%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
            T    +GDQ  +LA VLR + G    +         ++I+ V  S      ++      
Sbjct: 13  DTTASLTGDQAAHLARVLRAEPGQIFDVV-ANGFLHRAEITSVSDSEVVFTLHEELEADA 71

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133
              V  + +  K + +++ I+K+ E+G   I PV+ R T+          ++R R     
Sbjct: 72  ALPVHLLLAVFKFDHMEWGIEKATELGAERITPVLARRTEKHLSQAAAKRVERWRRIVRE 131

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           AA+Q     +P +  P TL+  L++     +++ A+     EN++      A   +VA+ 
Sbjct: 132 AAQQSRRSDVPTVDDPQTLKAALQSVSAETKLLLAE--TEQENTIAAALQQAS-QSVALA 188

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +GPEGG+  EE +      +   ++LGPRILR++TAA+A +A+  A+ 
Sbjct: 189 VGPEGGWTPEEMQLFTEHGWKH-VTLGPRILRAETAAIAGLAICSALL 235


>gi|304437370|ref|ZP_07397329.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369626|gb|EFM23292.1| RsmE family RNA methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 247

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++++F    L        +G   H+LA V+R + GD I + +         ++ + +  +
Sbjct: 1   MRQVFYPGVLTED--IAITGGDAHHLARVMRAQIGDVITVVDAAGQAAEMAVTELARDAV 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
             +++     +T+  +V  + + +K  ++D+++QK+ E+G   + P++T +       + 
Sbjct: 59  HLRMQRVLPVETEGREVILVQALLKGEKMDFVVQKAAELGAVCVCPIVTEHVVVRYDAKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCGSE 175
           T     R +     AA+QC    L  + P  +L  LL++       +   VF  E    +
Sbjct: 119 TAVKAARWQKIADEAAKQCGRRMLMRVAPIVSLTELLRDPAYIDAADTATVFCYEQEERQ 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +    L        V +++G EGG+   E   + +      +SLG RILR++TA++ A+A
Sbjct: 179 SMRTVLRG-TEARRVTLIVGAEGGFSPAEATAVTAAGG-QSVSLGHRILRAETASLTALA 236

Query: 236 LVQAICG 242
           + Q   G
Sbjct: 237 VTQYELG 243


>gi|315149224|gb|EFT93240.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0012]
          Length = 245

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDPTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|126652831|ref|ZP_01724976.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905]
 gi|126590367|gb|EAZ84487.1| hypothetical protein BB14905_09135 [Bacillus sp. B14905]
          Length = 245

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 19/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSI 65
           ++R F++  +      + SG+   ++  V+RMK+GD I++   ++   +  I+ + G  +
Sbjct: 1   MQRYFIETAI---ENARISGEDARHIERVMRMKQGDQIVVV-AQNIAHICTITGFEGDEV 56

Query: 66  RFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 ++  S      +       K ++L+ + QK+ E+GM A++P     +      +
Sbjct: 57  VVDATGETIPSSELPIQITVACGLPKGDKLELITQKATELGMFALQPFEAERSIVKWDKK 116

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R++     AAEQ     +P +Y P T + LL   D    +  ADE        
Sbjct: 117 KGAKKQERLQKIAKEAAEQAHRTHIPAVYEPVTFKQLLHEIDQFDAVFIADEEDAKAEKR 176

Query: 179 EKLHA------IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +            + ++ I+ GPEGG   +E E L      T +SLGPRILR++TA + 
Sbjct: 177 TRFADKLRLVHDQKLTSMLIIFGPEGGISRKESEALLQAGAQT-MSLGPRILRAETAPLY 235

Query: 233 AMALVQAIC 241
           A++ +    
Sbjct: 236 ALSAISYEF 244


>gi|227555475|ref|ZP_03985522.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           HH22]
 gi|307272833|ref|ZP_07554080.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855]
 gi|227175397|gb|EEI56369.1| protein of hypothetical function DUF558 [Enterococcus faecalis
           HH22]
 gi|306510447|gb|EFM79470.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0855]
 gi|315574554|gb|EFU86745.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309B]
 gi|315581804|gb|EFU93995.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0309A]
          Length = 245

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  +++V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSVVSY 239


>gi|108760347|ref|YP_629393.1| hypothetical protein MXAN_1133 [Myxococcus xanthus DK 1622]
 gi|108464227|gb|ABF89412.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK
           1622]
          Length = 244

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 7/228 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RLF   P     + + +G++ HYL HVLR++EGD + +F+GK   + +++++V   + 
Sbjct: 1   MVRLFAPLPEPAPAEVELTGERRHYLLHVLRLEEGDALEVFDGKGRAFEARVAHVTPDVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +R    + +V  +    K ++L+ ++QK  E+G  A  PV T  +      +  
Sbjct: 61  RVTLGTARVAPPRREVSILQGLPKGDKLELVLQKGTELGATAFHPVATARSVVKLEPKRA 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R       AA QC    +P +  P  L    ++      ++  DE   +    E 
Sbjct: 121 EERTSRWTKIVEEAARQCRRDDVPRVATPAPLLDAARSLTAGTVLLVLDEEESAVPLGEA 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             A      VA++IGPEGG   EE + L +L    P++LG RILR++T
Sbjct: 181 FRAAGAGTAVALVIGPEGGLAREEVDALMALG-ARPVTLGKRILRTET 227


>gi|322392665|ref|ZP_08066125.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321144657|gb|EFX40058.1| RsmE family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 247

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGCAISPVTIE-DKETSKHMFQVMRLKEDDKVTLVFDDGIKRLARVVNVETRQL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P +         L   D   +IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNLVPEVTLFEKKADFLAQLDQFDRIVVAYEESAKEGESAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIQAVAGLEKGAKLLFIFGPEGGLSPVEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|307287880|ref|ZP_07567913.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109]
 gi|306501025|gb|EFM70332.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0109]
          Length = 251

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|315167500|gb|EFU11517.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX1341]
          Length = 245

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKRQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|315223790|ref|ZP_07865639.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314946236|gb|EFS98236.1| RsmE family RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 246

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
             ++  ++  VLR K GD + + NGK   + +K+ +   K     +   +    +   + 
Sbjct: 21  DKEESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTPQLPRPYYLH 80

Query: 84  YIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            + +P K   R ++ ++K+ E+G+  I P+I  +++ T   ++R     +SA +Q     
Sbjct: 81  LVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCY 140

Query: 143 LPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           LP +  P       K    D + + +   +          L        + +LIGPEG +
Sbjct: 141 LPKLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLFRALKPF--PERITVLIGPEGDF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            + E  T     F+ P+SLG   LR++TAA+ A   V  I
Sbjct: 199 STNEINTALQQAFM-PISLGDTRLRTETAAIVACHTVAVI 237


>gi|300214541|gb|ADJ78957.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 243

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 15/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R F D    I T+ + + + Y +   VLRMK GD   L +  +     +I+ +  GK+
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDAFELVDDAEVVHKMEITKIEDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE         S+V       K ++ D+++QK  EMG       I  Y+      +
Sbjct: 59  EATSVEVIPSDVELPSNVTIACGISKNDKADWIVQKGTEMGATKFIFFIGDYSVAKWDRK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   + R++    SAAEQ     +P +     L+ +  +++ N   + A E    +   
Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKDI--DFEKNDARIVAYEESAKKGES 176

Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             L  I      ++  + GPEGG   +E E L +  F+    LGPRI+R++TA +  +A 
Sbjct: 177 GNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLAS 235

Query: 237 VQAIC 241
           +    
Sbjct: 236 LSFAL 240


>gi|317122986|ref|YP_004102989.1| hypothetical protein Tmar_2182 [Thermaerobacter marianensis DSM
           12885]
 gi|315592966|gb|ADU52262.1| protein of unknown function DUF558 [Thermaerobacter marianensis DSM
           12885]
          Length = 252

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 15/249 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
             +FVD  L    +     D  H+L  VLR   GD ++  +     WL ++   G     
Sbjct: 4   PHVFVDRELEPGARAPLPADDAHHLLRVLRRGPGDQVVAVSPGGCRWLGQLEP-GTPPHV 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------TH 121
             + +  S      V       K  +++ +++   E+G+    PV+   + +        
Sbjct: 63  VAQERLPSSEPPLHVTLGQGLPKGPKMEEVVRHGTEVGVSRFVPVLAARSVSRPEADAAA 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +     AA Q     +P + PP  LE LL        I+   E   S    E+L
Sbjct: 123 RRLQRWQRIAREAARQAQRSAVPQVDPPRPLEGLLAEEGPWDLILMPWEEEESRGLREEL 182

Query: 182 HAI-------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            A+       A    V +L+GPEGG+   E E          ++LGPRILR++TA V   
Sbjct: 183 EAVAAVWGRPAAGRRVLVLVGPEGGWDPAEVEAARRAG-ARVVTLGPRILRTETAGVLVA 241

Query: 235 ALVQAICGD 243
            LV  + GD
Sbjct: 242 GLVLHVLGD 250


>gi|330833709|ref|YP_004402534.1| hypothetical protein SSUST3_1939 [Streptococcus suis ST3]
 gi|329307932|gb|AEB82348.1| protein of unknown function DUF558 [Streptococcus suis ST3]
          Length = 248

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F++          +  D   ++  V+R++  + I+L      + L+++        
Sbjct: 1   MQQYFINGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDDGIKRLARVVDSQNQSV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  S +      V       K ++L+++ QK+ E+GM A+        V+    +  
Sbjct: 61  EIIEELSDNVELPVSVTIAMGFPKGDKLEFVAQKATELGMAALWAFPADWSVVKWDGKKL 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----N 176
               +++      AAEQ     +P +         L       QI+ A E    E    N
Sbjct: 121 CKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKVDFLAQLAGFDQIILAYEEAAKEGEQAN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ L  +    +V +++GPEGG   EE         V    LGPRILR++TA + A++ 
Sbjct: 181 LVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALSA 239

Query: 237 VQAIC 241
           +    
Sbjct: 240 ISYAT 244


>gi|168486375|ref|ZP_02710883.1| protein YqeU [Streptococcus pneumoniae CDC1087-00]
 gi|183570623|gb|EDT91151.1| protein YqeU [Streptococcus pneumoniae CDC1087-00]
          Length = 247

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V  + LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVL-VGLGPRILRAETAPLYALSS 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|113477044|ref|YP_723105.1| 16S ribosomal RNA methyltransferase RsmE [Trichodesmium erythraeum
           IMS101]
 gi|110168092|gb|ABG52632.1| protein of unknown function DUF558 [Trichodesmium erythraeum
           IMS101]
          Length = 258

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 12/249 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS---Y 60
            + L+RL +      + Q   + +Q HYL  VLR+  GD  ++ +G+   WL+K++    
Sbjct: 1   MADLQRLAIAPQQIDQQQVFLTVEQQHYLRRVLRLGVGDKFIVMDGEGKWWLAKLTPDIS 60

Query: 61  VGKSIRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117
           +   +   +E +   Q +   ++  I +  K N  D ++++S E+G+  I PVI+  T  
Sbjct: 61  IKTELIAILEQEIAIQNELPIEITLISALPKGNSFDEVVRQSTELGITHIFPVISSRTVL 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSEN 176
           + +   + R +     AAEQ +   +P I         L  ++  N    +    C + N
Sbjct: 121 KPSPQKLKRWQKIATEAAEQSERQVVPKIRETVEYSVALSLFEKQNLFTNYHKYICVARN 180

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                LE L     + ++ I IGPEGG+   E E   ++ F   +SLG RILR  TA + 
Sbjct: 181 NYPLLLESLLDNQKLESIVIAIGPEGGWTKGEIEAAIAIGF-QAVSLGKRILRGVTAPLV 239

Query: 233 AMALVQAIC 241
           A++LV A+ 
Sbjct: 240 ALSLVAAVL 248


>gi|296124207|ref|YP_003631985.1| hypothetical protein Plim_3975 [Planctomyces limnophilus DSM 3776]
 gi|296016547|gb|ADG69786.1| protein of unknown function DUF558 [Planctomyces limnophilus DSM
           3776]
          Length = 251

 Score =  217 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 18/246 (7%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
           + R F      PL    +    G + H+  HVLR+K G  I+LF+G      +++   G 
Sbjct: 1   MSRFFHPELLKPLDSG-ELLLEGSEAHHALHVLRVKTGQQIVLFDGHGNSATAEVIRPGR 59

Query: 63  KSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QN 119
           K +  ++      S      +  + +  K +RLD+M++K  E+G+    P+IT+ +    
Sbjct: 60  KDVGLRIVSGIQHSSPPALQLTLLVATPKGDRLDWMVEKLTELGVSRFVPLITQRSVVDP 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-------VFADETC 172
               ++R+R   ISA +Q     L  I  P  L   L   DH  Q        + A +  
Sbjct: 120 RESKLERLRQTVISACKQSHRDWLMEIEEPARLTDWLNRKDHPTQWFGSLQAPLVARKAS 179

Query: 173 GSENSLEKLHAIAHIP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                +   ++   +   ++AILIGPEGG+ SEE+  L +     P+ LG  +LR++TAA
Sbjct: 180 NDSQPIASANSRMPLENTSLAILIGPEGGWTSEEESQLMTSG-ARPVRLGQFVLRTETAA 238

Query: 231 VAAMAL 236
           +A  +L
Sbjct: 239 IALTSL 244


>gi|315025980|gb|EFT37912.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2137]
          Length = 245

 Score =  217 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESARQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGARLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|90961798|ref|YP_535714.1| hypothetical protein LSL_0821 [Lactobacillus salivarius UCC118]
 gi|90820992|gb|ABD99631.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
          Length = 243

 Score =  217 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 15/245 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R F D    I T+ + + + Y +   VLRMK GD   L +  +     +I+ +  GK+
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDTFELVDDAEVVHKMEITKIEDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE         +DV  +    K ++ D+++QK  EMG       +  Y+      +
Sbjct: 59  KATSVEVIPSDVELPADVTIVCGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWDKK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   + R++    SAAEQ     +P +     L+ +  +++ N   + A E    +   
Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKDI--DFEKNDARIVAYEESAKKGES 176

Query: 179 EKLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             L  I      ++  + GPEGG   +E E L +  F+    LGPRI+R++TA +  +A 
Sbjct: 177 GNLFKILNKKPSDIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLAS 235

Query: 237 VQAIC 241
           +    
Sbjct: 236 LSFAL 240


>gi|220909539|ref|YP_002484850.1| 16S ribosomal RNA methyltransferase RsmE [Cyanothece sp. PCC 7425]
 gi|219866150|gb|ACL46489.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 5/240 (2%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L+RL +      + Q   +  Q+HYL  VLR+  GD  L        WL+++S    
Sbjct: 1   MARLQRLAIASTQRQQQQIYLTPSQHHYLIQVLRLTVGDRFLAILEPGERWLAELS--SS 58

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            +   +E           V  + +  K    D ++ ++ E+G+  I P+I+  T  Q + 
Sbjct: 59  QVALLLEEVEGETELAVPVTLLAALPKGQGFDQVVYQATELGVSRIIPLISDRTLLQPSE 118

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R     A EQ   L +P I PP      +  ++   Q ++      +   L   
Sbjct: 119 QKLERWRRIVREATEQSGRLVVPRIDPPLRFSPAIAAFNPADQQLYFCTPDPAAPHLADC 178

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            A A    +AI+ GPEGG+   E     +  F   +SLG R+LR+ TA + A++LV A  
Sbjct: 179 LADAPFNPIAIMTGPEGGWTETEMTQAQAAGF-QSVSLGQRVLRAVTAPIVALSLVAAHL 237


>gi|117923554|ref|YP_864171.1| hypothetical protein Mmc1_0238 [Magnetococcus sp. MC-1]
 gi|117607310|gb|ABK42765.1| 16S rRNA m(3)U-1498 methyltransferase [Magnetococcus sp. MC-1]
          Length = 248

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 6/227 (2%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RL+   PLC         +   YL  VLR+ EGD + LFNG+ G W + I+     ++ 
Sbjct: 5   PRLYTPQPLCAGQPVTLDREAQRYLLKVLRLGEGDALYLFNGEGGAWSAHITQTSGPLQV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTHYNM 124
             +          ++  +    ++  ++ +IQK VE+G+  + P+ +  +       + +
Sbjct: 65  TPQQFEPEPMAPLNLTLVQGLSRSGPMELVIQKGVELGLQQLIPLQSARSVARAKGEHKL 124

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKLHA 183
           +R +   I AAEQC    L    P      L  +      +I+F ++      SL +  A
Sbjct: 125 ERWQRIAIEAAEQCRRSRLLQFQPVCDWSQLAGSLPEQGPRILFWEDHRHHTPSLRQWAA 184

Query: 184 I--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                   + +LIGPEGG  +EE     +       SLGPR+LR++T
Sbjct: 185 TLEQAPTQITLLIGPEGGLSAEEVTHATTNLGFQTCSLGPRVLRTET 231


>gi|313674581|ref|YP_004052577.1| hypothetical protein Ftrac_0464 [Marivirga tractuosa DSM 4126]
 gi|312941279|gb|ADR20469.1| protein of unknown function DUF558 [Marivirga tractuosa DSM 4126]
          Length = 231

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +    L  +       D+  +   VLR ++GD + + +GK   + +KI+    K  
Sbjct: 1   MQLFY--QNLLPEINY-LDQDESKHCIKVLRKQQGDELDIIDGKGTFYKAKITDASAKKC 57

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           RF++   ++ +          +P K  ++++++++K+ EMG+  I    + +++     +
Sbjct: 58  RFEIISTTQERKVAFHRHLAIAPTKNMDKMEWLVEKATEMGIDEISFFQSFHSERKVIKI 117

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R+    ISA +Q      P +      +  LK  D + +++        +N +   + +
Sbjct: 118 ERLEKKAISAMKQSLKAKKPLLNEIIPYKQFLKETDVSNKLIAY---VDFKNKIHMKNEL 174

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +H  +  +LIGPEG +  EE        +   +SLG   LR++TAA+AA+ L+ 
Sbjct: 175 SHQQDTLVLIGPEGDFTPEEVSLAIENRY-KKVSLGNSRLRTETAALAAVHLMN 227


>gi|221232521|ref|YP_002511674.1| hypothetical protein SPN23F_17940 [Streptococcus pneumoniae ATCC
           700669]
 gi|298230706|ref|ZP_06964387.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255499|ref|ZP_06979085.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503511|ref|YP_003725451.1| hypothetical protein HMPREF0837_12009 [Streptococcus pneumoniae
           TCH8431/19A]
 gi|220674982|emb|CAR69559.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239106|gb|ADI70237.1| protein of hypothetical function DUF558 [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 247

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKEISKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|326799017|ref|YP_004316836.1| ribosomal RNA small subunit methyltransferase E [Sphingobacterium
           sp. 21]
 gi|326549781|gb|ADZ78166.1| Ribosomal RNA small subunit methyltransferase E [Sphingobacterium
           sp. 21]
          Length = 236

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 7/228 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +         +   + D+  + A VLR+  GD I+L +G+   +  +I+    K  + +
Sbjct: 4   FYTPDIEANAIEYVLNEDESKHCARVLRLGIGDPIVLIDGRGSLFRVEIADAHPKRTKVR 63

Query: 69  VEYQSRSQ-TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +    R+   +   +    +P K  +RL++ ++K+ E+G+  I P+I  +++     ++R
Sbjct: 64  ILTIERNYGKRNHYLHIAVAPTKNLDRLEWFLEKATEIGIDEITPIICEHSERKELKIER 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +     +A +Q      P I  P       +        +     C     +     I  
Sbjct: 124 LTKVVTAAVKQSLSAYHPKINEPIDFRRFAEELPAKQHFIAH---CLEATKVTLTAEIKP 180

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             +  +LIGPEG +   E E   S      +SLG   LR++TAA+ A 
Sbjct: 181 HGSYCVLIGPEGDFSPSEVEFAISKG-CQAISLGNTRLRTETAALYAC 227


>gi|315033292|gb|EFT45224.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX0017]
 gi|315143405|gb|EFT87421.1| RNA methyltransferase, RsmE family [Enterococcus faecalis TX2141]
          Length = 245

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEY 71
                K   K + + YH++  V+RM   D   L        L++I  +  +  +  ++  
Sbjct: 3   EDYQEKDLYKVADENYHHIVRVMRMTPNDRCYLVFQNKTAILAEIVEIDSTSVYFKEISK 62

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMD 125
           +   +    +V       K ++L++++QK  E+G            V+    +       
Sbjct: 63  EEMDKELPIEVTIACGLPKGDKLEWIVQKGTELGGNQFIGFPAKTSVVKWDHKKRAAKEK 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI- 184
           R++     AAEQ      P +      + ++  +D    ++ A E    +    +L  + 
Sbjct: 123 RLQKIATEAAEQSHRQQTPSVSLVEKTQEIIAQFDSYDTVLVAYEESAKQGEKSQLAQVL 182

Query: 185 ---AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   + +L GPEGG+  +E E            LGPRILR++TA +  ++ V  
Sbjct: 183 STCQPGACLCVLFGPEGGFAPQEIEQFLQAG-AKLCGLGPRILRAETAPLYLLSAVSY 239


>gi|134300332|ref|YP_001113828.1| 16S ribosomal RNA methyltransferase RsmE [Desulfotomaculum reducens
           MI-1]
 gi|134053032|gb|ABO51003.1| protein of unknown function DUF558 [Desulfotomaculum reducens MI-1]
          Length = 247

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R FV            +G    +++ VLRM+ G+N+ L +G+   +L++I  + K  +
Sbjct: 1   MPRFFVQPEQINSDTAVINGPDVKHISRVLRMETGNNLTLLDGRGNVYLAQILEINKQEV 60

Query: 66  RFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++  Q  + ++    V  +    K ++++ +IQK  E+G+ +I P+    +      +
Sbjct: 61  HCRILEQQEATSEPTVKVTLVQGLPKGDKMETIIQKCTELGVSSIIPLAAARSIVKLDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   + AA+QC    +P +Y  ++ + +L+    +  ++   E   +++  
Sbjct: 121 KAAERVQRWQRVAVEAAKQCRRSGIPEVYMLSSWDEILQQIPPDALVLMPWEGERTKSLR 180

Query: 179 EKLHAIAHIPN-VAILIGP--------EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           E L      P  V I IGP                 E +    F  P++LG RILR++TA
Sbjct: 181 EVLQTRPMAPGQVYIFIGPEGGFEEEE--------VERVKEKGFY-PVTLGSRILRTETA 231

Query: 230 AVAAMALVQAICG 242
             AA+ +V    G
Sbjct: 232 GPAALTMVLYQFG 244


>gi|313891169|ref|ZP_07824788.1| RNA methyltransferase, RsmE family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120532|gb|EFR43652.1| RNA methyltransferase, RsmE family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 258

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+  P C         +   ++  V+R+ +GD + L      + L+ +S       
Sbjct: 1   MQQYFIKGP-CQNPIFIKDKETVKHMFQVMRLTDGDQVCLVFDDGIKRLAAVSDSAAHSF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E   +S     DV       K ++L+++ QK+ E+G  AI        V     +  
Sbjct: 60  TILEDWDQSVELPVDVTIASGFPKGDKLEWVTQKATELGASAIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +++      AAEQ     +P +         LK       +  A E          
Sbjct: 120 AKKQEKLAKIAQGAAEQSKRNIVPEVELFEQKADFLKQVSRFDSVFVAYEESAKTGEQAA 179

Query: 181 ----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L A      +  + GPEGG   +E +    +   T + LGPRI+R++TA +  ++ 
Sbjct: 180 FATGLKACQPGDKLLFIFGPEGGLSPQEIQAFEVMGAQT-IGLGPRIMRTETAPLYVLSA 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|255525324|ref|ZP_05392264.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7]
 gi|296188192|ref|ZP_06856584.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7]
 gi|255510996|gb|EET87296.1| protein of unknown function DUF558 [Clostridium carboxidivorans P7]
 gi|296047318|gb|EFG86760.1| RNA methyltransferase, RsmE family [Clostridium carboxidivorans P7]
          Length = 251

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 26/254 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV+           +GD   ++  VLR++ GD + + N    E+L +I  + K   
Sbjct: 1   MHKFFVNRNDINDNAAIINGDDVKHIYKVLRLQVGDKVNINNCGGEEFLGEIEEINKKQV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
               ++    +     +V       K+ ++D ++QK+ E+G+  + P++T      +   
Sbjct: 61  IVKFIKKLPLNNESNVEVYLFQGLPKSAKMDLIVQKTTELGVKEVTPIVTERVVVKNELG 120

Query: 122 --YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +Q     +P I  P   + LL+       IV   E        +
Sbjct: 121 EFKKIDRWCRIALEACKQSKRSLVPKINTPIEFQSLLEVLKQMDLIVVPYENAEGYGIKK 180

Query: 180 KLHAIAH----------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            ++ I             P           +   E E L  L     ++LGPRILR++TA
Sbjct: 181 VVNNIDKDSIKKIGIIIGPEGG--------FEESEIEALEKLG-AHIVTLGPRILRTETA 231

Query: 230 AVAAMALVQAICGD 243
               M+L+    GD
Sbjct: 232 GFVCMSLLMYELGD 245


>gi|256820668|ref|YP_003141947.1| 16S ribosomal RNA methyltransferase RsmE [Capnocytophaga ochracea
           DSM 7271]
 gi|256582251|gb|ACU93386.1| protein of unknown function DUF558 [Capnocytophaga ochracea DSM
           7271]
          Length = 246

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
             ++  ++  VLR K GD + + NGK   + +K+ +   K     +   +    +   + 
Sbjct: 21  DKEESQHIVKVLRKKAGDILHITNGKGLLFEAKLDFATPKQCEVSILKCTLQLPRPYYLH 80

Query: 84  YIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
            + +P K   R ++ ++K+ E+G+  I P+I  +++ T   ++R     +SA +Q     
Sbjct: 81  LVVAPTKMNERYEWFLEKATEIGVDEITPIICEHSERTTIKVERFEKILLSAMKQSLQCY 140

Query: 143 LPFIYPPTTLEFLLKNW--DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           LP +  P       K    D + + +   +          L +      + +LIGPEG +
Sbjct: 141 LPKLNAPIASAQFFKTMLTDSSAKYIAHCQENEKRLLSRALKSF--PERIIVLIGPEGDF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            + E  T     FV P+SLG   LR++TAA+ A   V  I
Sbjct: 199 STNEINTALQQAFV-PISLGDTRLRTETAAIVACHTVAVI 237


>gi|227890818|ref|ZP_04008623.1| protein of hypothetical function DUF558 [Lactobacillus salivarius
           ATCC 11741]
 gi|227867227|gb|EEJ74648.1| protein of hypothetical function DUF558 [Lactobacillus salivarius
           ATCC 11741]
          Length = 243

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R F D    I T+ + + + Y +   VLRMK GD   L +  +     +I+ +  GK+
Sbjct: 1   MQRYFADSK--ITTEYQLTPEIYKHAIKVLRMKVGDIFELVDDVEVVHKMEITKIEDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE         +DV       K ++ D+++QK  EMG       +  Y+      +
Sbjct: 59  KATSVEVIPSDVELPADVTIACGISKNDKADWIVQKGTEMGATKFIFFVGDYSVAKWDKK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
            +   + R++    SAAEQ     +P +     L+  +    ++ +IV  +E+     S 
Sbjct: 119 RSSKKVQRLQKIARSAAEQSHRTKIPEVTFVEKLKD-IDFEKNDARIVAYEESAKKGESG 177

Query: 179 EKLHAIAHIPNVAILI-GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                +   P+  I I GPEGG   +E E L +  F+    LGPRI+R++TA +  +A +
Sbjct: 178 NLFKILNKKPSNIIAIFGPEGGISPKEIEFLEANSFILA-GLGPRIMRAETAPLYFLASL 236

Query: 238 QAIC 241
               
Sbjct: 237 SFAL 240


>gi|297588453|ref|ZP_06947096.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297573826|gb|EFH92547.1| RsmE family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 241

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 114/245 (46%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           + R F +    I  +    G+ Y+++ + LR+ +GD I    G D  ++++I  +    I
Sbjct: 1   MYRTFRNPEDKIDDKIIIKGEDYNHIKNSLRLTKGDLIHQVIG-DTTFVTEIEDITPDEI 59

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K+  +   Q     ++      +K+++ +Y+IQK+ E+G+  I  V T  T      +
Sbjct: 60  ICKIIDEDNIQYESPLNITLYQCILKSDKNEYIIQKATELGVNRIVFVETERTVVKLDEK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +R     + +++Q     +P I     +   +   ++   +VF +       S 
Sbjct: 120 KWIKKKNRFEKIALESSKQSKRTFIPEIEGLININK-ISTQNNFLNLVFYENETE---SF 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L   ++  ++ I IGPEGG   E  + L S  F   +SLG RILR+DTA + A++++Q
Sbjct: 176 QSLLTNSNNKDINIFIGPEGGLSEENLQVLKSKGF-KSVSLGNRILRADTAPICALSIIQ 234

Query: 239 AICGD 243
              GD
Sbjct: 235 YELGD 239


>gi|227513276|ref|ZP_03943325.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083477|gb|EEI18789.1| nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           buchneri ATCC 11577]
          Length = 252

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++  F++  L    +     +  H+L+ VLR + GD + L +     +L++I  + G+ +
Sbjct: 1   MQHYFINENLTNNQRVTLPLEIGHHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQV 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
              ++ +         +V  +    K N+ + ++QK+ E+G   I  +     I ++ Q 
Sbjct: 61  TATIQKELHMDVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---DHNCQIVFADETC---G 173
           +   + R+    +SAAEQ     +P +    +L  L K       + ++V  +E      
Sbjct: 121 SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKRPFDGPFDVKLVAYEEAAKDGE 180

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             N  + L  I    ++  + GPEGG  SEE   L    +++   LGPRILR++TA +  
Sbjct: 181 ESNLAQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISA-GLGPRILRTETAPMYF 239

Query: 234 MALVQA 239
           ++ V  
Sbjct: 240 LSSVSV 245


>gi|227524419|ref|ZP_03954468.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088424|gb|EEI23736.1| RsmE family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
          Length = 248

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 12/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++  F++  L    +     +  H+L+ VLR + GD + L +     +L++I  + G+ +
Sbjct: 1   MQHYFINENLTNNQRVTLPLEIGHHLSKVLRAEVGDKVQLVSATHLVYLAEIGSIDGRQV 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
              ++ +         +V  +    K N+ + ++QK+ E+G   I  +     I ++ Q 
Sbjct: 61  TATIQKELHMDVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
           +   + R+    +SAAEQ     +P +    +L  L K    + ++V  +E        N
Sbjct: 121 SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKR-PFDVKLVAYEEAAKDGEESN 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  I    ++  + GPEGG  SEE   L    +++   LGPRILR++TA +  ++ 
Sbjct: 180 LAQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISA-GLGPRILRTETAPMYFLSS 238

Query: 237 VQA 239
           V  
Sbjct: 239 VSV 241


>gi|319745949|gb|EFV98232.1| RsmE family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 246

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 12/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+         +   D   ++ +V+R+ E D ++L      + L+K+        
Sbjct: 1   MQQYFVNGKADDFVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +      V       K ++LD + QK+ E+G  AI        V+    +  
Sbjct: 60  QILEELDSNVEMPVQVTIASGFPKGDKLDLVTQKATELGAAAIWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               D++    + AAEQ     LP +             +   +I  A E    E     
Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELNGFDKIFIAYEESAKEGEMSA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  +     +  + GPEGG   +E      +  +  + LGPRI+R++TA + A+++
Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSV 238

Query: 237 VQA 239
           +  
Sbjct: 239 ISY 241


>gi|261378167|ref|ZP_05982740.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685]
 gi|269145632|gb|EEZ72050.1| 16S rRNA methyltransferase RsmE [Neisseria cinerea ATCC 14685]
          Length = 241

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 18/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R ++   L ++       +   +L +VLR++ G  I+LF+GK     ++++ + K   
Sbjct: 1   MSRFYLPENLSVRQTVNLPDNIIRHL-NVLRIRTGTEIILFDGKGKAHAARLTVLEKRRA 59

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++  +  + T+    +  I S     R+D+ +QKSVE+G+ AI+PVI+         +
Sbjct: 60  EAEILREETADTESPLHITLIQSISSGERMDFTLQKSVELGITAIQPVISERCIVRLNGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENS 177
                + R +   ISA EQ    T+P + P TT    L+     + +++       S N 
Sbjct: 120 RADKRLARWQEIVISACEQSGRNTVPPVLPITTYRESLRQIPSESTRLIM------SINR 173

Query: 178 LEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             KL  I     ++  ++GPEGG+  +E++      F   ++LG RILR++TAA+AA+A 
Sbjct: 174 ACKLADIRPQSGSIVFMVGPEGGWTEQEEQYAFDAGF-QAVTLGKRILRTETAALAALAA 232

Query: 237 VQAICGDW 244
           +Q + GD+
Sbjct: 233 MQTLWGDF 240


>gi|299148609|ref|ZP_07041671.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23]
 gi|298513370|gb|EFI37257.1| RNA methyltransferase, RsmE family [Bacteroides sp. 3_1_23]
          Length = 232

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 7/219 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--RSQTKQS 80
           +   ++  +   VLR+  GD I L +GK   + ++I+       F    ++  +      
Sbjct: 14  ELPEEEAQHCIRVLRLSIGDEITLTDGKGDFYKAEITVATNKRCFVNIKETIFQEPLWPC 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+    +SA +Q  
Sbjct: 74  HLHIAMAPTKNMDRNEWFAEKATEIGFNELTFLNCRFSERKVIKTERIEKILVSAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
              LP +      +  ++  +   Q   A    G +  L+ +  +    +  +LIGPEG 
Sbjct: 134 KARLPKLNEMIEFDQFIRQ-EFKGQKFIAHCYEGEKPLLKNV--LKPGEDALVLIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  EE +      FV P+SL    LR++TAA+ A   + 
Sbjct: 191 FSEEEVKKAIERGFV-PISLSKSRLRTETAALVACHTLN 228


>gi|322375727|ref|ZP_08050239.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300]
 gi|321279435|gb|EFX56476.1| RNA methyltransferase, RsmE family [Streptococcus sp. C300]
          Length = 247

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETIKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDVEACQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELADNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P +         L   D    IV A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSVKLFEKKADFLAQLDQFDSIVVAYEESAKEREAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A++ 
Sbjct: 180 LLQAVTGLEKGAKLLFIFGPEGGLSPTEIESFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|193213798|ref|YP_001994997.1| 16S ribosomal RNA methyltransferase RsmE [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087275|gb|ACF12550.1| protein of unknown function DUF558 [Chloroherpeton thalassium ATCC
           35110]
          Length = 247

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 114/240 (47%), Gaps = 18/240 (7%)

Query: 10  LFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
            FV        K + + +  ++H++  V+R K GD + + +G+   + ++I  +GK S  
Sbjct: 4   FFVPESHIDLTKNRIELADQEFHHIVRVVRKKSGDTLWITDGRGTCFQTEIEQIGKNSAE 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            K+  Q +    ++ +    S +K + R D+ ++K+ E+G+  I P++T  T      + 
Sbjct: 64  LKILSQEKKPAPKTKIAVALSLMKASERFDFFLEKATELGVAEILPMMTHRTVSRPAEKQ 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R     ++A++Q   +  P ++P    E +LK  D    I +       ENS +
Sbjct: 124 YEKKHERWEKIVLAASKQSRQMWFPKLHPIQPFEEVLKRNDEVKLIAY-------ENSAQ 176

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L       ++  LIG EGG+   E        F   ++LG  +LR++TA + A+A+V+A
Sbjct: 177 HLVQGFSGKSILFLIGGEGGFTEAEVLAAKQAGF-QEMTLGESVLRAETAGIFAVAMVRA 235


>gi|331701362|ref|YP_004398321.1| ribosomal RNA small subunit methyltransferase E [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128705|gb|AEB73258.1| Ribosomal RNA small subunit methyltransferase E [Lactobacillus
           buchneri NRRL B-30929]
          Length = 246

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++  FV   L +    +      H+L  VLR + GD   L       + ++I  +  +  
Sbjct: 1   MQHYFVSEHLTVGQSIELPKTISHHLCRVLRAEVGDRFELVGDDHQVYEAEIGRLEGNQV 60

Query: 67  FKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
                +    +     DV  +    K N+ ++++QK+ E+G+  +  +     I ++ Q 
Sbjct: 61  AANIIKPLDHNVELPVDVTIVSGLSKGNKPEWIVQKATELGVAHVIFLPMDWSIVKWDQK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               + R+    +SAAEQ     +P +   + L+ L    D + Q+V  +E+       N
Sbjct: 121 ATKKITRLNEVALSAAEQSHRNVVPTVAYLSGLDALF-QLDFDTQLVAYEESAKQGEETN 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +   A    +A + GPEGG    E   L    FV    LGPRILR++TA +  ++ 
Sbjct: 180 LVKAVRQTASGGTMAAVFGPEGGVSPAEVTQLVDHDFVLA-GLGPRILRTETAPLYFLSA 238

Query: 237 VQAIC 241
           V  + 
Sbjct: 239 VSTLT 243


>gi|282898816|ref|ZP_06306803.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196343|gb|EFA71253.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 250

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L+RL +      + Q   +  Q HYL  VLR+++GD  +  +G    WL++++    
Sbjct: 1   MAQLQRLTIQASQLQQNQVLLTPQQKHYLLRVLRLQDGDEFISMDGMGKWWLTRLTADTA 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            I   ++  +        +  + +  K N  D +++ S E+G+ +I PV++  T    + 
Sbjct: 61  QI---LQPLTPKTELPLSITLMLALPKGNAFDDVVRYSTELGVSSILPVLSDRTLLNPSP 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R     AAEQ +   +P I  P      L  + ++   +   E  GS   L  +
Sbjct: 118 QRLERWRRIAAEAAEQSERAFVPTILEPVVFNAALSEYINSQCYIC--EARGSYPHLINI 175

Query: 182 HAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             I   +I  V + IGPEGG+   E  T     F  P+SLG RILR+ TA + A++L+ A
Sbjct: 176 INIPLKNIKEVVVAIGPEGGWTETEIATAILAKF-QPVSLGDRILRAATAPIVALSLIAA 234

Query: 240 IC 241
            C
Sbjct: 235 AC 236


>gi|79362513|ref|NP_175422.2| methyltransferase [Arabidopsis thaliana]
 gi|49660069|gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
 gi|55740521|gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
 gi|332194384|gb|AEE32505.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
           thaliana]
          Length = 296

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R F D  P       +  G ++ ++A VLR+K+ D + LFNGK G     I  + K+ 
Sbjct: 53  LPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTG 112

Query: 66  RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120
              +  + +     Q  Q  V   F  +K  R D++I+K  E+G  ++ P++T  +   +
Sbjct: 113 VDFIAQEDQKVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIIS 172

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+   + +AA+QC  L    + PP     LL +   +   + A  T  ++  L  
Sbjct: 173 ENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGTLLDHILKSKLCLVA--TAEAKPLLNA 230

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +++ A   +  +++GPEG +  +E E +      T + LGP  LR +TA +A +A +  +
Sbjct: 231 VNSSAKESSGLLIVGPEGDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLATL-VM 288

Query: 241 CGD 243
             D
Sbjct: 289 WSD 291


>gi|77409131|ref|ZP_00785845.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           COH1]
 gi|77172259|gb|EAO75414.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           COH1]
          Length = 246

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 12/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+         +   D   ++ +V+R+ E D ++L      + L+K+        
Sbjct: 1   MQQYFVNGKADDFVTIE-DKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +      V       K ++LD++ QK+ E+G  AI        V+    +  
Sbjct: 60  QILEELDSNVEMPVQVTIASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               D++    + AAEQ     LP +                 +I  A E    E     
Sbjct: 120 AKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELAGFDKIFIAYEESAKEGEMSA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  +     +  + GPEGG   +E      +  +  + LGPRI+R++TA + A+++
Sbjct: 180 LAQNLQTVKAGDKLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSV 238

Query: 237 VQA 239
           +  
Sbjct: 239 ISY 241


>gi|326319528|ref|YP_004237200.1| ribosomal RNA small subunit methyltransferase E [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323376364|gb|ADX48633.1| Ribosomal RNA small subunit methyltransferase E [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 240

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 16/242 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++ R     PL              +   VLR++ GD I LF+G+ GE+ + ++ +G+S 
Sbjct: 2   NIPRFHCPEPLSSGAALALPPAAARH-VQVLRLQPGDAITLFDGRGGEYAATVARMGRSD 60

Query: 66  RFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              +        ++    V  +       R+D++++K+ E+G+  I+PV    +      
Sbjct: 61  VEVLVGAHDPVEREAGRSVHLVVGMPANERMDWLVEKATELGVARIQPVAAARSVLKLSG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSE 175
           +         +    +A EQC    +P +  P  L   L+        ++V        E
Sbjct: 121 ERALKRQAHWQAIAAAACEQCGRNRVPQVEAPVPLADWLRLPPAPDAARLVL----SLRE 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            S     A A    V +L GPEGG    E++      F+ P SLGPR+LR++TA+VAA++
Sbjct: 177 GSRPLHDAAASAACVQVLHGPEGGLAPHEEDLALERGFL-PASLGPRVLRAETASVAALS 235

Query: 236 LV 237
           L+
Sbjct: 236 LL 237


>gi|182411872|ref|YP_001816938.1| hypothetical protein Oter_0047 [Opitutus terrae PB90-1]
 gi|177839086|gb|ACB73338.1| protein of unknown function DUF558 [Opitutus terrae PB90-1]
          Length = 251

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 15/249 (6%)

Query: 7   LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           +   R+F        ++   S D+ H+L  V R K GD ++ F+G+  EW+ ++    K+
Sbjct: 1   MPDFRVFCLPATAEPSEITLSADESHHLVAVNRAKRGDTVVAFDGRGVEWICELVDDRKN 60

Query: 65  IR-FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
               KV ++ +++    ++    +  K   +D +++K+ E+G   I P+ +  TQ     
Sbjct: 61  AALLKVRFRQKARPLAYEITLGQALPKGASMDAIVRKATEIGATRIAPLESERTQVHLDS 120

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             +   +D+ +T  + AA+QC    LP I         +++       + A     +++ 
Sbjct: 121 DRSDRKIDKWQTAALEAAKQCGNPFLPEITAVQNASTFMESARGYDLKLIASLQPAAKSL 180

Query: 178 LEKLHAIAH-----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              L A           V  L+GPEG +   E     +  F  P++LGP +LR +TAAV 
Sbjct: 181 KTVLAAFQATHGRTPKKVLWLVGPEGDFTPAEMSLSKTAGF-EPITLGPLVLRCETAAVY 239

Query: 233 AMALVQAIC 241
           A++++    
Sbjct: 240 ALSVLSYEL 248


>gi|67924875|ref|ZP_00518269.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501]
 gi|67853274|gb|EAM48639.1| Conserved hypothetical protein 46 [Crocosphaera watsonii WH 8501]
          Length = 241

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 6/234 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R+ ++           + +Q HYL +VLR+KE    ++ +G +  +L K++     I   
Sbjct: 4   RIVIEPRQKQGKIINLTPEQKHYLKNVLRLKEDSEFIVIDGHNQTYLVKLNQDKGEI--- 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           ++           V  + +  K    D +I+   E+G+  I P+IT+ T  + + + ++R
Sbjct: 61  IKELKEQTELPITVTLMIALPKNKGFDEVIRSCTELGVNTIIPIITKRTLLKPSSHKIER 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     A EQ +   +P I  P +    L N D+  +  +          L        
Sbjct: 121 WRKIVKEATEQSERQIVPIIMEPMSFSEALNNMDNTNKNCYICVARKKAKHLLTYLLPEI 180

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             +V I  G EGG+  EE +    L F+ P++LG R+LR+ TA + A++LV A+
Sbjct: 181 TNSVIIATGCEGGWTEEEIDQAEDLGFI-PVNLGSRVLRAVTAPLVALSLVGAV 233


>gi|268317477|ref|YP_003291196.1| hypothetical protein Rmar_1925 [Rhodothermus marinus DSM 4252]
 gi|262335011|gb|ACY48808.1| protein of unknown function DUF558 [Rhodothermus marinus DSM 4252]
          Length = 239

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 109/230 (47%), Gaps = 6/230 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-- 67
            +           +   D+ H+   VLR + GD +++ +G  G    ++  V +      
Sbjct: 5   FYAPPEAFRDGWVRLPDDEAHHAVRVLRHRPGDEVIVVDGVGGWHRLRLELVDRQGVQGR 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +E +         +    + +K   R +  ++K+VE+G+ AI P++T  T+ TH+  +R
Sbjct: 65  VLETRRDVGEPPYRLTIGLALLKQTARFETFLEKAVELGVAAIVPLLTARTERTHFRPER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R   I+A +QC    LP ++ P     +L +     +++  ++     + + +L     
Sbjct: 125 ARRLLIAAMKQCGRSRLPLLHAPRPFAEVLHD-PAALRLLCHEQPDRPRHPIHELLR-RP 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           + +  +L+GPEGG+ S+E     +  F T +SLG R LR++TAA+ A + 
Sbjct: 183 VGDALVLVGPEGGFTSDEVLQAEAAGFQT-VSLGARRLRAETAALVAASA 231


>gi|300869308|ref|ZP_07113899.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC
           6506]
 gi|300332685|emb|CBN59097.1| 16S ribosomal RNA methyltransferase RsmE [Oscillatoria sp. PCC
           6506]
          Length = 284

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 120/276 (43%), Gaps = 40/276 (14%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L+RL +        Q   +  Q HYL  VLR++EGD  L  +G+   WL++++ +  
Sbjct: 1   MAQLQRLAIAPSQLQDRQIILTAQQQHYLYRVLRLREGDRFLAMDGRGHCWLAELAAID- 59

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
           ++    E          DV  + +  K N  D +++++VE+G+  I PV++  T  + + 
Sbjct: 60  AVAVIQEEVFIKSELNVDVTLMAALPKGNGFDDVVRQAVELGVYCIIPVVSDRTLLKPSS 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF-------ADETCGS 174
             ++R +     AAEQ +   +P +  P +    ++N D   + +            C  
Sbjct: 120 QKIERWQRIAAEAAEQSERQIVPVMLEPVSFAVGVENCDRKYKYICVARGDSRHLLDCLL 179

Query: 175 ENSLEK-----------------------------LHAIAHIPNVAILIGPEGGYHSEEK 205
           +N +EK                                I + P++ I  GPEGG+  +E 
Sbjct: 180 DNKIEKEESPITNHQSPIINSQLPITNYQLPITNHQSQITNYPSIVIATGPEGGWTEKEV 239

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            T     F  P+SLG RILR+ TA + A++++  + 
Sbjct: 240 TTAIQFSF-QPVSLGSRILRAVTAPIVALSIIAGVL 274


>gi|310659094|ref|YP_003936815.1| hypothetical protein CLOST_1790 [Clostridium sticklandii DSM 519]
 gi|308825872|emb|CBH21910.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 248

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 14/233 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F+   +   T  + + +   +++ VLR++  D I + +  + E+L +I  + K   
Sbjct: 1   MDRFFIRQEISQSTFIE-NQEDVKHISKVLRLRVNDKIEVVDSNEKEYLCEIIAISKDSV 59

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E  +  +     ++      K  +LD + QK  E+G+ +I PV  +        +
Sbjct: 60  EYKVIEEVAIKRELGVQIKVYQGVPKGQKLDLIAQKLTEIGVYSITPVEFKRCVSSIKEE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R++     AA+Q     +P I  P T + L+K    N   +   E C  EN+L
Sbjct: 120 KEDKKIARLQRIIYEAAKQSKRNHIPKIESPMTFKELVKELKSNTINIVFYE-CEEENNL 178

Query: 179 EKLHA---IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +   A   ++ I ++ +++GPEGG   EE E L S      L+LG RILR++T
Sbjct: 179 KSYFASLDLSDIESIGVIVGPEGGITPEEIELLESNG-CKVLTLGARILRTET 230


>gi|71082844|ref|YP_265563.1| hypothetical protein SAR11_0136 [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061957|gb|AAZ20960.1| conserved hypothetical protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 233

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 7/233 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67
           RLF    L +    K    Q HY+  V+R+K G+   LFN    EW +KI  + KSI  F
Sbjct: 5   RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNNSG-EWEAKILTISKSIVEF 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R +    D+   FSPIK+N  ++MIQK+ E+G+    P+I   T     N +R+
Sbjct: 64  NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ + + +P I  P +L+  L +   +  ++F D    SEN     + +AH 
Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNHEKMD--LIFTD--LNSENKKLDFNKLAHN 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           P   ++IGPEG +  EE+  + +   V P+ +   ILRS+TA ++A+++V  +
Sbjct: 180 PT-CVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVNYL 231


>gi|282881481|ref|ZP_06290152.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS
           5C-B1]
 gi|281304645|gb|EFA96734.1| RNA methyltransferase, RsmE family [Prevotella timonensis CRIS
           5C-B1]
          Length = 242

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 8/233 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            FV     +    +    +  +   VLR+  GD + L +G    + + ++       F  
Sbjct: 7   FFVPDADHVN---ELPTSEALHALRVLRLSSGDEMFLMDGVGNFYRAIVTIASTKHCFYE 63

Query: 70  EYQSRSQTKQS--DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             ++  Q K     +    +P K   R+++M++K  E+G   I  +  ++++       R
Sbjct: 64  IQETLPQQKSWRGHIHLAIAPTKTMERIEWMVEKMTEIGFDEITFLNCQFSERKQIRPIR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIA 185
           +    I+A +Q      P + P  + +  +      +  I         ++ L  LH I 
Sbjct: 124 LEKIVIAAMKQSRKPWKPVVNPMVSYKNFIHHQTTGHRYIAHCYPEIERKDLLTTLHQIT 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              ++ IL+GPEG +  +E +      F + +SLG   LR++TA + A+A+ Q
Sbjct: 184 DDDDITILVGPEGDFSVDEVKFAEQAGFES-ISLGKNRLRTETAGLMAVAMTQ 235


>gi|320527295|ref|ZP_08028480.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204]
 gi|320132319|gb|EFW24864.1| RNA methyltransferase, RsmE family [Solobacterium moorei F0204]
          Length = 247

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 13/239 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65
           +++ F D PL +  +   + DQ H+  +V+R+   + I L  +G      +  S     +
Sbjct: 5   MQQYFSDTPLVVGQEYILNKDQAHHAKNVVRLHH-ETIRLVYDGIGYFADA-YSKGKDFV 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +E   R      +V      I+  + + ++QK+ E+G+  I P  +         + 
Sbjct: 63  AMVLEKDERINEIGVEVTLAMGLIRKEKFELVLQKACELGVTRIVPFESIRCVVRAKKEK 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R       AAEQC    +P I P   L+ L+K    +   V   E   S+ S  
Sbjct: 123 EDKQQARRIDILQEAAEQCKRNWIPEITPIVQLKDLVKYR--SDVNVLPYENAYSK-SKF 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               ++   +V  +IGPEGG+  EE E L    F   ++LG RILR++TAA+ A A++ 
Sbjct: 180 MTEVLSPGQSVTFVIGPEGGFAPEEVEFLQQNGF-EAITLGKRILRAETAAMYACAVIS 237


>gi|261880465|ref|ZP_06006892.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270332804|gb|EFA43590.1| RsmE family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 241

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 107/232 (46%), Gaps = 7/232 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRF 67
           R F   P       +   D+  +   VLR++ GD+I L +G+   + ++++  VGK   +
Sbjct: 5   RYFY-SPNASDLT-ELPSDEAQHAIRVLRLQVGDDIYLMDGQGMFYHAEVTLSVGKHCSY 62

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
            + E   +++T    +    +P K  +R+++M++K+ E+G+  +  ++ ++++      D
Sbjct: 63  IIKEELPQTKTWLGRIHLAIAPTKMMDRMEWMLEKATEIGVDEVTMLLCQFSERKKIRTD 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAI 184
           R+    +SA +Q      P +   T  +  +       + I          +  E+L  +
Sbjct: 123 RLDKIIVSAMKQSRKAWKPRLNDLTQFKDFIVQSRRGRKFIAHCYHDIEKVDLFEELQQV 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                + +L+GPEG +  +E        + + ++LG   LR++TA + A+ +
Sbjct: 183 PQDEEITVLVGPEGDFSIDEVHFALEHGYES-IALGSSRLRTETAGLMAVTM 233


>gi|116627096|ref|YP_819715.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           thermophilus LMD-9]
 gi|116100373|gb|ABJ65519.1| Uncharacterized protein conserved in bacteria [Streptococcus
           thermophilus LMD-9]
 gi|312277559|gb|ADQ62216.1| Ribosomal RNA small subunit methyltransferase E [Streptococcus
           thermophilus ND03]
          Length = 247

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+              D   ++ +V+R+ E D ++L      + L+++      + 
Sbjct: 1   MQQYFIKG-QVENPVIIKDKDTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+ + QK  E+G  AI        V+    +  
Sbjct: 60  EVIEDLNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
               D++    + AAEQ     +P +         L    H  +I  A E       L  
Sbjct: 120 AKKEDKLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELAT 179

Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  + +   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELAKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|58617229|ref|YP_196428.1| hypothetical protein ERGA_CDS_05020 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416841|emb|CAI27954.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 238

 Score =  215 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 128/230 (55%), Gaps = 5/230 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V   +   +  K      HY++ V+R  + D++ +FNGKDGEW+ +I  +  +I+ +
Sbjct: 9   RLYVPDSISKHSIIKLDTLASHYISKVMRATKCDHVKIFNGKDGEWIGEICELSNNIKIR 68

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           ++  +R Q K  ++   F  +K   L  +I+++ EMG+  ++P+ T++   ++ N+D+ R
Sbjct: 69  IDKLTRKQVKSKNLTLCFGIVKGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCR 128

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + I A+EQC+ L +P I  P +   L K    N   +  DET   +   E L    +  
Sbjct: 129 KWAIEASEQCERLDIPQISHPISFTDLKKLDTANINFIICDETGNGKKPAEILT---NKN 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           N+ I++GPEGG+ SEE +      F   LSLG RILR DTA V+A+A V 
Sbjct: 186 NIYIIVGPEGGFSSEELDFA--YTFCNGLSLGTRILRVDTAVVSALAYVN 233


>gi|260438505|ref|ZP_05792321.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM
           2876]
 gi|292809094|gb|EFF68299.1| RNA methyltransferase, RsmE family [Butyrivibrio crossotus DSM
           2876]
          Length = 247

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 24/251 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           + R F              G   +++ +VLRMK+ D +++  G + ++L  I  +    I
Sbjct: 1   MNRFFAKSENIFSDHIVIDGLDVNHIKNVLRMKKDDELMVSGGNNTDYLCSIKEFTDDEI 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +   + +       +       K ++++ +IQK VE+G+  I PV  + +      +
Sbjct: 61  YLSIISANEADRELPCRIHLFQGLPKGDKMEMIIQKCVELGVNEIIPVAMKRSVVRLDDK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                + R +  + SAA+Q     +P I+   + +  +    D + +++  +   G + +
Sbjct: 121 KAKSKVARWQLISESAAKQSGRTIIPCIHEVMSFKEAVNYAKDMDVKLIPYELCEGMKAT 180

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-------FVTPLSLGPRILRSDTAA 230
            E L  +    +VA+ IGP        +  L            + P+SLG RILR++TA 
Sbjct: 181 KEALSGLKSGMDVAVFIGP--------EGGLEVEEVEKAKELGIIPISLGKRILRTETAG 232

Query: 231 VAAMALVQAIC 241
           +A MA++    
Sbjct: 233 LAIMAIIMYHL 243


>gi|91762733|ref|ZP_01264698.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718535|gb|EAS85185.1| hypothetical protein PU1002_05671 [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 233

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 7/233 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-F 67
           RLF    L +    K    Q HY+  V+R+K G+   LFN    EW +KI  + KSI  F
Sbjct: 5   RLFFKESLSLNLTAKLDKSQSHYVNKVMRIKVGEVFSLFNNSG-EWEAKILTISKSIVEF 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R +    D+   FSPIK+N  ++MIQK+ E+G+    P+I   T     N +R+
Sbjct: 64  NITKQLRQKENVKDLWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ + + +P I  P +L+  L +      ++F D    SEN     + +AH 
Sbjct: 124 EKVIIEAAEQSNRINVPLIEDPQSLKSFLNH--EKMGLIFTD--LNSENKKLDFNKLAHN 179

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           P   ++IGPEG +  EE+  + +   V P+ +   ILRS+TA ++A+++V  +
Sbjct: 180 PT-CVIIGPEGDFSEEERGEILAFKGVQPIKINENILRSETAVISALSIVNYL 231


>gi|148984210|ref|ZP_01817505.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147923499|gb|EDK74612.1| nicotinic acid mononucleotide adenyltransferase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800568|emb|CBW33208.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
          Length = 247

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFIAQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIKLFEKKADFLAQLDQFDSIIVAYEESAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ +  +     +  + GPEGG    E E+  +   V    LG RILR++TA + A++ 
Sbjct: 180 LLQAVTGLETGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGSRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|260590983|ref|ZP_05856441.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319]
 gi|260536848|gb|EEX19465.1| RNA methyltransferase, RsmE family [Prevotella veroralis F0319]
          Length = 255

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 18/243 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            FV        + +   ++  +   VLR+KEGD I L +G+   + +++S       F  
Sbjct: 7   FFVP---NANVEKELPTEEAIHALRVLRLKEGDEIFLMDGEGSFYQAEVSLATSKKCFYT 63

Query: 70  EYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             Q   Q       +    +P K   R+++M++K+ E+G   I  +  ++++      DR
Sbjct: 64  IKQVLKQEPTWCGKIHLAIAPTKDMGRMEWMVEKATEIGFDEITFLNCKFSERKVLRTDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKLHAI 184
           +    ISA +Q      P +   T+    + N   +    I         ++    +   
Sbjct: 124 IEKIVISAVKQSHKAWKPVVNDMTSFCKFIDNHKCNGQKYICHCYSEIDRDDFFTLIDTF 183

Query: 185 AH---------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           AH           ++ +L+GPEG +  EE        F   ++LG   LR++TA ++A+ 
Sbjct: 184 AHNVQDIKPSIGNDITVLVGPEGDFSIEEVRYAIDHGF-KSVTLGNSRLRTETAGLSAVM 242

Query: 236 LVQ 238
           + Q
Sbjct: 243 MSQ 245


>gi|304413315|ref|ZP_07394788.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1]
 gi|304284158|gb|EFL92551.1| 16S rRNA methyltransferase [Candidatus Regiella insecticola LSR1]
          Length = 271

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 14/220 (6%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L   ++   + D   +++ VLRMK+G  + LF+G +  + ++I  + K   F        
Sbjct: 12  LSDHSEIVLNDDAVKHVSLVLRMKKGQLLHLFDGSNRLFTAEIIRLDKKKVFVRVDAGCV 71

Query: 76  QTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRV 127
           + ++S +      +  +  R++  IQKSVE+G+  + P+ +         +       + 
Sbjct: 72  EDRESPLHLHLGQVISRGERMELTIQKSVELGVNVLTPLFSERCSIKLSEERLEKKNQQW 131

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I+A EQC    +P I    +L    +  D + ++    +     N+L        +
Sbjct: 132 RKIAIAACEQCGRNVIPEIRAAMSLSDWCQQQDDSLKLTLDPQAKKQMNTLPL-----SV 186

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
             + +LIG EGG  ++E +   +  F   + +GPRI R++
Sbjct: 187 DKIRLLIGSEGGLSADEIDMTFNNGF-EGIRMGPRIFRTE 225


>gi|312890379|ref|ZP_07749916.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM
           18603]
 gi|311297149|gb|EFQ74281.1| protein of unknown function DUF558 [Mucilaginibacter paludis DSM
           18603]
          Length = 234

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 8/228 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++ LF    +        S ++  +   VLR++ GD++ L +G  G + ++I     K +
Sbjct: 1   MQ-LFYTPDITDSPIYFLSEEESKHCIRVLRLQMGDHVQLIDGHGGLYEAEIVDAHPKKV 59

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             K+   Q+    +   +    +P K   RL++ ++K+ E+G+  I  +I + ++     
Sbjct: 60  ALKLLSLQNEFGRRNHYLHIAVAPTKNLERLEWFLEKATEIGIDEISLMICQRSERKEAK 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R+     SA +Q      P +   T  + L+ N   + Q   A    G +  L  L  
Sbjct: 120 AERLNKIITSAIKQSLKAYHPLLNEVTPFQKLI-NQPFDGQKFIAHCEPGDKAELSSLLK 178

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           +       ILIGPEG +  +E E      F  P++LG   LR++TAA+
Sbjct: 179 LQGC--YLILIGPEGDFSPKEIEDALQNGF-EPITLGNSRLRTETAAL 223


>gi|120613393|ref|YP_973071.1| 16S ribosomal RNA methyltransferase RsmE [Acidovorax citrulli
           AAC00-1]
 gi|120591857|gb|ABM35297.1| protein of unknown function DUF558 [Acidovorax citrulli AAC00-1]
          Length = 240

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 16/242 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++ R     PL              +   VLR++ GD I LF+G+ GE+ + ++ +G+S 
Sbjct: 2   NIPRFHCPEPLSSGAALALPPAAARH-VQVLRLQPGDAITLFDGRGGEYAATVARMGRSD 60

Query: 66  RFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              +        ++    V  +       R+D++++K+ E+G+  I+PV    +      
Sbjct: 61  VEVLVDAHDPVEREAGRSVHLVVGMPANERMDWLVEKATELGVARIQPVAAARSVLKLSG 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK--NWDHNCQIVFADETCGSE 175
           +         +    +A EQC    +P +  P  L   L+        ++V        E
Sbjct: 121 ERALKRQAHWQAIAAAACEQCGRNRVPRVEAPVPLADWLRLPPAPGAARLVL----SLRE 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            S     A A    V +L GPEGG    E++      F+ P SLGPR+LR++TA+VAA++
Sbjct: 177 GSRPLHDAAAGAACVQVLHGPEGGLAPHEEDLALERGFL-PASLGPRVLRAETASVAALS 235

Query: 236 LV 237
           L+
Sbjct: 236 LL 237


>gi|319406725|emb|CBI80358.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 194

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 113/190 (59%), Gaps = 2/190 (1%)

Query: 56  SKISYVGKSIRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
            + S+  K I       Q R Q   SD+ Y F+P+K  RLDY+IQK+VEMG+  + PVIT
Sbjct: 3   CQASFYKKKIVVACLIRQERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVIT 62

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            +TQ T  NM R+    I A+EQC IL+LP   P   LE  L+NWD    + F DE   S
Sbjct: 63  HHTQVTRINMARIEANIIEASEQCGILSLPKCAPVVALETFLENWDKTHALFFCDELNES 122

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N +  L      P + +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DTAAVAA+
Sbjct: 123 YNPIPLLRKHGTKP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAAL 181

Query: 235 ALVQAICGDW 244
            LV A  GDW
Sbjct: 182 TLVNATMGDW 191


>gi|17228844|ref|NP_485392.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc sp. PCC 7120]
 gi|17130696|dbj|BAB73306.1| alr1349 [Nostoc sp. PCC 7120]
          Length = 235

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            S L+R+ +      + Q   +  Q HYL  VLR++EGD  ++ +G    WL+ ++    
Sbjct: 1   MSQLQRITIAPSQLQQEQVLLTTQQKHYLKRVLRLREGDRFIVMDGLGKWWLANLTEEQA 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            +   +E  +        +  + +  K +  D +++   E+G+  I PV++  T    + 
Sbjct: 61  QV---LEELAVKTELPVAITLMIALPKGSGFDEVVRSCTELGVACIAPVLSDRTLLNPST 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R     AAEQ +   +P I  P T    + N     + +  +      +    L
Sbjct: 118 QKLERWRRIASEAAEQSERAFVPTILEPLTFSDAVNNITAVHRYI-CEARGEYVHLKNVL 176

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             I+    V + IGPEGG+   E E   +L F  P+SLG RILR+ TA + A++L+ A C
Sbjct: 177 TDISGG--VVVAIGPEGGWTDRELEEATTLRF-QPVSLGGRILRAVTAPLVALSLISAAC 233


>gi|225024619|ref|ZP_03713811.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC
           23834]
 gi|224942633|gb|EEG23842.1| hypothetical protein EIKCOROL_01496 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 103/232 (44%), Gaps = 18/232 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R +V          +   +   ++  VLR++ G  ++LF+G+     +++  +G+   
Sbjct: 1   MPRFYVPQTFVAGEVLRLPENVCRHI-QVLRLQAGAPLVLFDGQGQAVAAELLEIGRKQA 59

Query: 67  FKVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                +  + S+     V  I +   + ++D+ +QK  E+G+  I P ++  +      +
Sbjct: 60  MARVDKLLTESRESPLAVTLIQAVSASEKMDFAVQKGTELGVKRIVPTVSMRSNVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176
                + R +   ISA EQC    +P + P   L  +L     +   +++ +        
Sbjct: 120 RAEKKVRRWQEIAISACEQCGRNEVPPVAPIVDLAQVLAALPADSGARLLLSPHGGV--- 176

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               L ++  + +  +LIGPEGG  +EE++   S  F   + LG R+LR++T
Sbjct: 177 ---PLRSLPPVQSSVLLIGPEGGLTAEEEDLARSYGF-QAVQLGARVLRTET 224


>gi|332882920|ref|ZP_08450527.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679128|gb|EGJ52118.1| RNA methyltransferase, RsmE family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 254

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 20/246 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           R F    + +  +     D+  +   VLR++ GD I L +GK   + ++I+   GK   F
Sbjct: 5   RFFYAPDVAVDAE--LPADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLF 62

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           KV E     +     +    +P K  +R++++ +K+ E+G   +  +  RY++      +
Sbjct: 63  KVLEAVPHPKEWSGHLHLALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLE-FLLKNWDHNCQIVFADETCGSENSLEK---- 180
           R+    +SA +Q      P +      + F+ + +     I    +        +     
Sbjct: 123 RIDKILVSAMKQSHKARKPLLNEMEDFKRFVARPFAGQKFIAHCYDEADVAGVAKASEDK 182

Query: 181 ---------LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                    L  +    +  +L+GPEG +  +E     +  F   +SLG   LR++TAA+
Sbjct: 183 AMDGGKPFLLDELDAGQDALVLVGPEGDFSIDEVRLAQAHGF-RSVSLGRSRLRTETAAL 241

Query: 232 AAMALV 237
            A+ L+
Sbjct: 242 VAVHLM 247


>gi|254455755|ref|ZP_05069184.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207082757|gb|EDZ60183.1| conserved hypothetical protein TIGR00046 [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 232

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RLF    L I  + K    Q HY++ V+R+KE +   LFN    EW +KI  + KS + F
Sbjct: 5   RLFFPKSLSINLKDKLDKSQSHYVSKVMRIKENEVFSLFNSSG-EWEAKIISISKSSVEF 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
            +  Q R +    ++   FSPIK+N  ++MIQK+ E+G+    P+I   T     N +R+
Sbjct: 64  NITKQLRQKENLKELWLAFSPIKSNYFNFMIQKATELGVTKFLPIIFDRTIVRKINKERL 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I AAEQ + +T+P I  P  L+  L N      I     T  ++  L+KL      
Sbjct: 124 EKVIIEAAEQSNRITVPIIEEPQKLKNFLSN--DMDLIFTDLNTSNTKIDLKKLTT---- 177

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               ++IGPEG +  EE+E +     V  + +   ILRS+TA ++A++++  
Sbjct: 178 KPTCVIIGPEGDFSEEEREKILKFNGVQSIKINENILRSETAVISALSIINY 229


>gi|328945350|gb|EGG39503.1| RsmE family RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 250

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 14/246 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KE + + L      + L+++   G+  
Sbjct: 1   MQQYFIKGSPQSP--LVVTDKDTAKHMFSVMRLKEDEQVTLVFDDGVKRLARVLDPGQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              VE  + +      V       K ++L+++ QK+ E+G  A+        V     + 
Sbjct: 59  LEIVEELADNTELPVQVTIASGFPKGDKLEFITQKATELGACALWGFPAEWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L       +I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAALAAFDRIIVAYEESAKEGETA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +     V  + GPEGG  S+E    H    V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLETGAKVLFIFGPEGGLSSDEIAAFHQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAIC 241
            V  + 
Sbjct: 238 AVSVLL 243


>gi|227510269|ref|ZP_03940318.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189921|gb|EEI69988.1| RsmE family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 248

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 12/243 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           ++  F++  L    +     +  H+L+ VLR + GD + L +     +L++I  + G+ +
Sbjct: 1   MQHYFINENLTNNQRVILPLEIGHHLSKVLRAEVGDKVQLVSVTHLVYLAEIGSIDGRQV 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
              ++ +         +V  +    K N+ + ++QK+ E+G   I  +     I ++ Q 
Sbjct: 61  TATIQKELHMNVELPVEVTIVSGLSKKNKPELIVQKATELGADHIIFLPMARSIVKWDQK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
           +   + R+    +SAAEQ     +P +    +L  L K    + ++V  +E        N
Sbjct: 121 SEKKLKRLNEVALSAAEQSHRNLVPTVSYLHSLYELTKR-PFDVKLVAYEEAAKDGEESN 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  I    ++  + GPEGG  SEE   L    +++   LGPRILR++TA +  ++ 
Sbjct: 180 LAQALKDIRPDTSIVAVFGPEGGISSEEISLLTDQAYISA-GLGPRILRTETAPMYFLSS 238

Query: 237 VQA 239
           V  
Sbjct: 239 VSV 241


>gi|329770528|ref|ZP_08261906.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325]
 gi|328836277|gb|EGF85946.1| hypothetical protein HMPREF0433_01670 [Gemella sanguinis M325]
          Length = 249

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64
           +++ FV+    + ++ + S +  +++  V+R    D + +    + +++  I    + + 
Sbjct: 1   MQQYFVNKNFNLNSEYELSKEDSNHIVRVMRKNINDKVFIVFNDEIKYICNIIDNNIDRV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           I    E    S   ++ +     P+K ++++Y++QK  E+G+  I    +          
Sbjct: 61  IVEPFEKVEESNELKTKITVAIPPLKNDKIEYLLQKLTELGVFNIILFNSERNIAKIKAD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS---- 174
             +  + R       AAEQ     +P +    +L+ L+    +    V A E        
Sbjct: 121 KINSKLKRWDKILKEAAEQSKRNIIPTLSYVNSLQELINTTTNMDYKVVAYEKESHNKNN 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           EN    L    +  ++  + G EGG    E   L    F   +SLG RILR++TA +  +
Sbjct: 181 ENLKALLKDDLNNKSIIAVFGSEGGISENEINILTKSEF-KMVSLGKRILRAETAPLYLV 239

Query: 235 ALVQA 239
           + +  
Sbjct: 240 SCIAY 244


>gi|225175075|ref|ZP_03729071.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT
           1]
 gi|225169251|gb|EEG78049.1| protein of unknown function DUF558 [Dethiobacter alkaliphilus AHT
           1]
          Length = 246

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + R F         +   + D  H+L  VLR   G  + L + K     + I+ V    +
Sbjct: 1   MSRFFYGPGQVHGDEVILTDDDAHHLLRVLRASVGQEVELCDDKGSCRRAVIAGVDHGEV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNT 120
           R ++ ++             F  +K  + ++++QK+ E+G     P  +  +     +  
Sbjct: 61  RCRLGHELPDSEAVIRFYLAFGVLKGEKTEFILQKATELGAAGFFPFTSERSVVRPDKKA 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R +     AA Q     +P + PP     +L       ++VF  E+       + 
Sbjct: 121 EKIQKRWQKIIHGAAAQSRRAIIPQLNPPCKWPDVLDLSKTFDKVVFFWESEEDRPLAKS 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           L   +    V ++ GPEGG+ ++E   L  L  + P++LGPRILR
Sbjct: 181 LEGCSRGDRVLLITGPEGGFSAKEAAALGKLG-IEPVTLGPRILR 224


>gi|310818984|ref|YP_003951342.1| hypothetical protein STAUR_1711 [Stigmatella aurantiaca DW4/3-1]
 gi|309392056|gb|ADO69515.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 244

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 7/228 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RLFV  P    T+   SGD++HYL HVLR+ EG ++ +F+G    + ++++ V     
Sbjct: 1   MVRLFVPLPEHPPTEVLLSGDRHHYLLHVLRLSEGASLEVFDGTGRAFEARVAAVDAREA 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +RS   +  +  +    K ++L++++QK  E+G  A  PV T  +      +  
Sbjct: 61  RLTLGAARSTPPRRALSVLQGLPKGDKLEWVLQKGTELGAAAFYPVDTARSVVKLEPKRA 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R       AA QC    +P ++PP  L    +      Q++  DE   +    E 
Sbjct: 121 GERTLRWEKIVEEAARQCRRNDVPQVHPPAALLDRARALPPGTQLLVLDEEETAVPLGEA 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             A A    VA+++GPEGG   EE   L +L     ++LG  ILR++T
Sbjct: 181 FRACAPGAPVALVVGPEGGLTREEVAALRALG-ARGVTLGALILRTET 227


>gi|319403717|emb|CBI77302.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 195

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 87/179 (48%), Positives = 111/179 (62%), Gaps = 1/179 (0%)

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             ++  Q R Q   SD+ Y F+P+K  RLDY+IQK+VEMG+  + PVIT +TQ T  NM 
Sbjct: 2   VARLIRQERLQPIHSDLFYCFAPLKHMRLDYVIQKAVEMGVSVLYPVITHHTQVTRINMA 61

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+    I A+EQC IL+LP   P  +LE  L+NWD    + F DE   S N +  L    
Sbjct: 62  RIEANIIEASEQCGILSLPKCAPAVSLETFLENWDKAHALFFCDELNESYNPIPLLRKHG 121

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             P + +LIGPEGG+  EE+  L   PFV  +SLGPRILR+DTAAVAA+ LV A  GDW
Sbjct: 122 TKP-LGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALTLVNATMGDW 179


>gi|116510923|ref|YP_808139.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106577|gb|ABJ71717.1| hypothetical protein LACR_0090 [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 250

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 13/245 (5%)

Query: 9   RLFVDFPLC-IKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + FV   L  I  +         H++  V+R + GD + L   +    LS+I        
Sbjct: 4   QYFVFKELPKIGEKFTIENQAAAHHIFTVMRAQAGDQLRLVFEEGKIGLSEIISPADQSV 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNT 120
             +E  + S      V       K ++LD++++KS E+G  AI        V     +  
Sbjct: 64  RLIELLTDSSELPVQVTVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177
               +++    + AAEQ     +P I        L + +    Q++ A E          
Sbjct: 124 TKKQEKLEKVALGAAEQSRRQLIPKIQLFDQFSRLTEQFSDFDQVLVAYEESAKMGETSM 183

Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  ++    V I+ GPEGG   +E     +L     + LGPRILR++TA + A++ 
Sbjct: 184 FKQALTELSANQKVLIIFGPEGGISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSS 242

Query: 237 VQAIC 241
           + A  
Sbjct: 243 ISAYF 247


>gi|307127980|ref|YP_003880011.1| hypothetical protein SP670_1859 [Streptococcus pneumoniae 670-6B]
 gi|306485042|gb|ADM91911.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
          Length = 247

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVLDVEARQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELDDNVELPVQVTISSGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF----ADETCGSEN 176
              ++++    + AAEQ     +P I+        L   D   +I+     A +   +  
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +  +     +  + GPEGG    E E   +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIKAVTGLEKGAKLLFIFGPEGGLSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 LSVLL 243


>gi|257455067|ref|ZP_05620310.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus
           SK60]
 gi|257447539|gb|EEV22539.1| RNA methyltransferase family protein [Enhydrobacter aerosaccus
           SK60]
          Length = 294

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 110/281 (39%), Gaps = 53/281 (18%)

Query: 7   LKRLFVDFP--LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F + P  L + +    + D +H+   VLR   G+  L F+G+ GE+   +  V K 
Sbjct: 1   MRRFFYNQPNLLQVGSTVPLTEDIFHHWCKVLRASMGEQALFFDGQGGEYTVTLKDVTKK 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
                        +        + +  +  R+DY IQK+ E+G+ +I+ + +++ +    
Sbjct: 61  QALVTINDFNPINRALPFTVNIALVMSRGERMDYAIQKATELGVSSIQLLTSQHGEVRLK 120

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD------HNCQIVFA-- 168
                  +   +   +SA EQC +  +P +  P  +   +          +  +++ A  
Sbjct: 121 ADQADKKLAHWQQIAVSACEQCGLNIVPNLLAPKAVSDWIDEPAGVPTSTNVTKLILAVP 180

Query: 169 ------------------DETCGSENSLEKLHAIAHIPN----------------VAILI 194
                             + +    N +E +      PN                  +LI
Sbjct: 181 PDDSGVVTSCNQIEGSDIEHSDIEHNDIEPIAPYTPYPNPLPHITNQFRQCSLAQFWLLI 240

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           G EGG+ ++E        F+ P  +G R+LR++TA V A++
Sbjct: 241 GAEGGFSAQEITQAIERGFI-PWQIGERVLRTETAPVVALS 280


>gi|307564915|ref|ZP_07627435.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A]
 gi|307346355|gb|EFN91672.1| RNA methyltransferase, RsmE family [Prevotella amnii CRIS 21A-A]
          Length = 265

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +V     +K   +   ++  +   VLRMK+GD + L +G    + ++++       F  
Sbjct: 7   FYVP---DVKNSTELPAEEMVHAVRVLRMKQGDELFLMDGAGYFYRAQVTMTSAKHCFYT 63

Query: 70  EYQSRSQTKQS--DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             ++  Q K     +    +P K   R++++ +K  E+G+  I  +  R+++     +DR
Sbjct: 64  IKEALYQKKNWRGHIHLAIAPTKDIGRIEWLAEKVTEIGIDEITFLSCRFSERKQLRIDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----------NCQIVFADETCGSEN 176
           +    ISA +Q      P +   T+    ++              N  I    E    ++
Sbjct: 124 IEKIIISAMKQSRKGWKPIVNEMTSFGDFIRKVSATTYSNKKPSINKFICHCYEEIKKKD 183

Query: 177 SLEKLHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               L     +  +V ILIGPEG +  EE +   +  F   ++LG   LR++TA ++A+ 
Sbjct: 184 LFSLLTKRNALERDVLILIGPEGDFSVEEVDLALANGF-QSVTLGDSRLRTETAGLSAVT 242

Query: 236 LVQ 238
           + Q
Sbjct: 243 MAQ 245


>gi|171060614|ref|YP_001792963.1| 16S ribosomal RNA methyltransferase RsmE [Leptothrix cholodnii
           SP-6]
 gi|170778059|gb|ACB36198.1| protein of unknown function DUF558 [Leptothrix cholodnii SP-6]
          Length = 247

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 14/238 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RLFVD PL              +   VLRM+ G+ +++FNG+ GEW  +I+ +G+S    
Sbjct: 4   RLFVDTPLQAGLDLSLPAGAARH-VQVLRMQPGEELIVFNGQGGEWRVRIARMGRSEVQV 62

Query: 69  VEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           +  Q     ++    V  +       R D++I+K+ E+G   I P +   +      +  
Sbjct: 63  LVEQFVDVDRELALHVTLVAGMPANERFDWLIEKATELGAAEIVPTMCERSVLRLSGERA 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN---CQIVFADETCGSENS 177
               +  +   ISAA+QC    +P I    +L         +    Q++ +         
Sbjct: 123 QKKREHWQGIAISAAQQCGRTRVPHIAAVRSLSEERAGESADTPVTQLLLSLADAQPLGR 182

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                A    P + I  GPEGG+   E+  L       P SLGPR+LRS+TA +A ++
Sbjct: 183 RLAARADTGAP-LRIYSGPEGGFTEAEERLLRQ-GGAQPTSLGPRVLRSETAPLAVLS 238


>gi|58698200|ref|ZP_00373121.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535281|gb|EAL59359.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 228

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             +  ++ Q  + ++    + +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ   +++P I PP     L  +   N   V  DET  ++  L         
Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVL------KGK 176

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            NVAI++GPEGG+ S E +      F   LSLG RILR DTA +AA+ 
Sbjct: 177 KNVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVLAALT 222


>gi|260221803|emb|CBA30730.1| Ribosomal RNA small subunit methyltransferase E [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 241

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 11/230 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKS- 64
           + R F    L   T  +       +   VLR++ GD+I LF+G+   E+ + ++ +G+S 
Sbjct: 1   MPRFFCAAALVSDTALELPAGAARH-VQVLRLQPGDSITLFDGQSADEFDATVTRMGRSD 59

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  +V + ++ ++     +         +R+D++++K+ E+G+ +I+P++T  +      
Sbjct: 60  VAVQVGQRRTVAREPARQIHLAVGMPANDRMDWLVEKATELGVASIQPLMTERSVLKLSG 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +   ++  ++A EQC    +P ++P  TL   LK+      I           S
Sbjct: 120 ERAEKKVAHWQSVAVAACEQCGGNMVPVVHPMQTLAQWLKSPSAQSDIPQRLLLSLRAGS 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
                  +    V  L GPEGG  S E+E   +  F +P SLGPR+LR++
Sbjct: 180 TPVASLPSGPAPVWFLSGPEGGLSSHEEEAAIAARF-SPASLGPRVLRAE 228


>gi|208779920|ref|ZP_03247264.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|208744375|gb|EDZ90675.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 242

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 125/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F D  +  KT     SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IKT   + +IQK+ E+G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHISNENNYITNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ + A+     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KVKSSANFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           +
Sbjct: 240 V 240


>gi|186681306|ref|YP_001864502.1| 16S ribosomal RNA methyltransferase RsmE [Nostoc punctiforme PCC
           73102]
 gi|186463758|gb|ACC79559.1| protein of unknown function DUF558 [Nostoc punctiforme PCC 73102]
          Length = 249

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 17/251 (6%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            S L+R+ +      + Q   + +Q HYL  VLR++EGD  +  +GK   WL+++   G+
Sbjct: 1   MSQLQRIAIAPSQFQQGQILLTKEQQHYLGRVLRLREGDRFIAMDGKGKWWLAQL--AGE 58

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
             +  +E           +  + +  K N  D +++   E+G+  I PV++  T    + 
Sbjct: 59  QAQV-LESLLVETELPVSITLMVALPKGNGFDEVVRCCTELGVTCIAPVLSDRTLLDPSP 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV----FADETCGSENS 177
             ++R R     AAEQ +   +P I  P      L     +        +  E       
Sbjct: 118 QKLERWRRIAAEAAEQSERSFVPTILEPVAFNTGLSLVIGHLSFANSQQYICEARAEFPH 177

Query: 178 LE-------KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           L+       ++ +      + I  GPEGG+ ++E E   +  F  P+SLG RILR+ TA 
Sbjct: 178 LKHCLQHKGQMTSDKGQETIVIATGPEGGWTTQEIENAIASGF-QPVSLGRRILRAVTAP 236

Query: 231 VAAMALVQAIC 241
           V A++L+ A C
Sbjct: 237 VVALSLITASC 247


>gi|224826821|ref|ZP_03699921.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002]
 gi|224601041|gb|EEG07224.1| protein of unknown function DUF558 [Lutiella nitroferrum 2002]
          Length = 242

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 16/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F+D  L              +   VLR+  GD I LFNG+ GE+ + +S V K   
Sbjct: 1   MPRFFLDGELAPGMTLALPDSVLRH-VQVLRLNPGDAITLFNGRGGEYPATLSRVLKRDA 59

Query: 67  FKV--EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             V  E+   ++     +    +    +++++ +QK VEMG+   +P+    +      +
Sbjct: 60  ECVLGEFADVARESPVWLGLAQAISGGDKMEFTLQKGVEMGVSVFQPLTAERSVVRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                + R +   I+A EQC   ++P + P  TL   L+   + + ++V +        +
Sbjct: 120 RADKRVARWQEIVIAACEQCGRNSVPEVRPILTLAEWLRELPEADARLVLSP-----LGT 174

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  A   +  ++ GPEGG  + E+       + TPL LGPRILR++TAA+AA+A +
Sbjct: 175 QRLADIAAAPASAWLMAGPEGGLSAREEGAAIEAGW-TPLKLGPRILRTETAALAAVAAI 233

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 234 QTVWGDY 240


>gi|188585812|ref|YP_001917357.1| protein of unknown function DUF558 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350499|gb|ACB84769.1| protein of unknown function DUF558 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 240

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 20/230 (8%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY-QSRSQTKQSDVQYIFSPI 89
           +  VLR+K GD ++L +GK G   S I+ +G+  I F++E     ++     +    S I
Sbjct: 1   MTRVLRLKIGDRVILLDGKGGACFSFINRLGEGQIEFELEEPLIDNKEAPIRITLAQSLI 60

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQ---------NTHYNMDRVRTYTISAAEQCDI 140
           K +  ++++QK  E+G     P+I++ T+              + R R    +AAEQC  
Sbjct: 61  KKDNFEFVLQKGTELGATEFYPLISQRTEVNLLNKSDKKVSKKLTRWREIVKNAAEQCQR 120

Query: 141 LTLPFIYPPTTLEFLLKNWD------HNCQIVFADETCGSENSLEKLHAIAHIPN-VAIL 193
             LP I+ P   E  LKN +       +   +   E   +    + L  I   P+   IL
Sbjct: 121 QVLPLIHYPVNFEKYLKNNNENSNNNGSRLKIMCHEQENT-PLKKVLKTIETPPSSAIIL 179

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           IGPEGG+   E +      F + +S+GPRILR++TA + A++ +     D
Sbjct: 180 IGPEGGFSHNEVDLAREQGF-SSVSMGPRILRAETAGIVAVSAILYELAD 228


>gi|42521009|ref|NP_966924.1| hypothetical protein WD1212 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225630878|ref|YP_002727669.1| putative methyltransferase [Wolbachia sp. wRi]
 gi|225677207|ref|ZP_03788200.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|42410750|gb|AAS14858.1| conserved hypothetical protein TIGR00046 [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225590731|gb|EEH11965.1| putative methyltransferase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225592859|gb|ACN95878.1| putative methyltransferase [Wolbachia sp. wRi]
          Length = 228

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             +  ++ Q  + ++    + +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ   +++P I PP     L  +   N   V  DET  ++  L         
Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVL------KGK 176

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            NVAI++GPEGG+ S E +      F   LSLG RILR DTA VAA+ 
Sbjct: 177 KNVAIIVGPEGGFSSYELDLADK--FCQKLSLGKRILRVDTAVVAALT 222


>gi|298373262|ref|ZP_06983251.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274314|gb|EFI15866.1| RNA methyltransferase, RsmE family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 232

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 12/234 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +    L        + ++ ++   VLRM+EGD + + +GK   + ++I           
Sbjct: 4   FYSPNVLETNA---LTEEESYHCTKVLRMREGDVVQVTDGKGNMYEAEIVLPDTVHTMLA 60

Query: 70  EYQSRSQ--TKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                S    ++  +    +P K  +R +++++K+VE+G+  I P++ ++++      +R
Sbjct: 61  IRSVMSDFGKRRYRLHLAVAPTKNIDRFEWLVEKAVEIGVDRITPLLCQHSERRTVKTER 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    ++AA+Q     +P I P T    +  + D   + V        EN  +   A   
Sbjct: 121 LEKIALAAAKQSLKAYIPKIDPITHFAEITAHSDDEQRFVAHCYDMPKENLFD---ACRP 177

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA--MALVQ 238
             +  +LIGPEG + +EE E   +  F   +SL    LR++TA + A  +A V+
Sbjct: 178 RQSTVVLIGPEGDFSTEEVELALTAGF-RSVSLSDSRLRTETAGIVAANIAAVR 230


>gi|118497856|ref|YP_898906.1| hypothetical protein FTN_1271 [Francisella tularensis subsp.
           novicida U112]
 gi|194323829|ref|ZP_03057605.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423762|gb|ABK90152.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194322193|gb|EDX19675.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|332678571|gb|AEE87700.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
           novicida Fx1]
          Length = 242

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F D  +  KT     SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IK+   + +IQK+ E+G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ +  +     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           I
Sbjct: 240 I 240


>gi|304384219|ref|ZP_07366634.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973]
 gi|304334720|gb|EFM00998.1| RsmE family RNA methyltransferase [Prevotella marshii DSM 16973]
          Length = 246

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 11/236 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +V   +   +Q +   ++  +   VLR+  GD I L +GK   + +++S         V
Sbjct: 7   FYVPDAV---SQTELPQEEAVHALRVLRLNVGDEIFLMDGKGVFFRAEVSMTSSKHCSYV 63

Query: 70  EYQSRSQTKQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             +S  Q       +    +P K   R+++M +K+ E+G  A+  +  +Y++      DR
Sbjct: 64  IKESMPQCPAWRGHIHLAIAPTKMTERMEWMTEKATEVGFDALTFLHCQYSERKTLRTDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLHAIA 185
           +    ISA +Q     LP ++P  + +  +       + +    +    ++   ++    
Sbjct: 124 MERIAISAMKQSRKAWLPAVHPLMSFKDFIAQPHCGRKFICHCYDEIDRKDFFTEISREP 183

Query: 186 HIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                 +V +LIGPEG +  +E +      FV+ +SLG   LR++TA ++A+ + Q
Sbjct: 184 VDDADCDVCVLIGPEGDFSLDEVKQAIGCGFVS-VSLGQSRLRTETAGLSAVMMAQ 238


>gi|331270009|ref|YP_004396501.1| hypothetical protein CbC4_1830 [Clostridium botulinum BKT015925]
 gi|329126559|gb|AEB76504.1| conserved hypothetical protein TIGR00046 [Clostridium botulinum
           BKT015925]
          Length = 251

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 96/257 (37%), Gaps = 31/257 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F+             G+   ++  VLR+KEG+ + + N    E+L  I Y+ K  +
Sbjct: 1   MHKFFISEDKIFSDLAVIEGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKV 60

Query: 66  RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
             K VE    +     +V       K+ ++D + QK  E+G+  I P++T          
Sbjct: 61  EVKLVEELKVNNEPPIEVYLFQGLPKSTKMDLITQKCTELGIKEITPIVTSRVSSSINDI 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR       A +Q     +P +   T  +           IV   E   +   
Sbjct: 121 KRESKKIDRWNRIAFEACKQNKRTLIPIVNDITDFDGFTAKLKDMDLIVVPYENAENYGI 180

Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEE----------KETLHSLPFVTPLSLGPRILRS 226
            +    +   +  +AI+I                      +L +      ++LGPRILR+
Sbjct: 181 KQMTKGLKGEVKKIAIVI----------GPEGGFEEEEITSLKNKG-AHIVTLGPRILRT 229

Query: 227 DTAAVAAMALVQAICGD 243
           +TA    +AL+    GD
Sbjct: 230 ETAGFTCLALLMYELGD 246


>gi|56708314|ref|YP_170210.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670785|ref|YP_667342.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134301732|ref|YP_001121700.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931804|ref|YP_001891789.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|224457434|ref|ZP_03665907.1| 16S rRNA m3U1498 methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370797|ref|ZP_04986802.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875134|ref|ZP_05247844.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604806|emb|CAG45885.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321118|emb|CAL09268.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049509|gb|ABO46580.1| hypothetical protein FTW_0692 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569040|gb|EDN34694.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712713|gb|ACD31010.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841133|gb|EET19569.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159545|gb|ADA78936.1| hypothetical protein NE061598_07235 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 242

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F D  +  KT     SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IK+   + +IQK+ E+G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ +  +     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           +
Sbjct: 240 L 240


>gi|311747456|ref|ZP_07721241.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1]
 gi|126574815|gb|EAZ79186.1| RNA methyltransferase, RsmE family [Algoriphagus sp. PR1]
          Length = 234

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 12/239 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  F         +      +  +L  VLR +EGD I + +GK   +  K+     K  
Sbjct: 1   MQLFF--QENITPPKITLDPIESKHLTRVLRKREGDIIHVTDGKGSIYECKLVDSNPKKS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             ++    +       +    +P K+ +R+++MI+K  E+G   +  + +  ++ +    
Sbjct: 59  ILQIISSEKVPADDYYIHLAIAPTKSPDRMEWMIEKITEIGFHELTLLSSMNSERSFLKT 118

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKL 181
           +R+    ISA +Q      P I   T L+    N D       I + DE          +
Sbjct: 119 ERLHKKMISACKQSLKFHTPKINQTTDLKEFFNNSDFEDFQKFIAYVDENHDHH----LM 174

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  N  ILIGPEG +  +E E      F  P+SLG   LR++TA +AA+ ++Q +
Sbjct: 175 DVAKPQANYLILIGPEGDFSPQEIEKAFEFNF-KPVSLGKSRLRTETAGLAAVQMLQVL 232


>gi|262283462|ref|ZP_06061228.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260953|gb|EEY79653.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 247

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 93/245 (37%), Gaps = 14/245 (5%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+   P           D   ++  V+R+KEGD + L      + L+++    +  
Sbjct: 1   MQQYFIKGNPQSP--LVVTDKDTAKHMFSVMRLKEGDQVTLVFDDGVKRLARVLDPNQQS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              +E  + +      V       K ++L+++ QK  E+G  AI        V     + 
Sbjct: 59  LEILEELADNTELPVQVTIASGFPKGDKLEFITQKVTELGACAIWAFPADWSVAKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++      AAEQ     +P +         L        I+ A E    E    
Sbjct: 119 LAKKSEKLEKIAQGAAEQSKRNLIPEVRLFDKKADFLAALAAFDCIIVAYEEAAKEGESA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +  L  +A    V  + GPEGG   EE         V+   LGPRILR++TA + A+ 
Sbjct: 179 ALVRALSGLAVGAKVLFIFGPEGGLSPEEIAAFGQAGAVSA-GLGPRILRAETAPLYALT 237

Query: 236 LVQAI 240
            V  +
Sbjct: 238 AVSVL 242


>gi|171909516|ref|ZP_02924986.1| hypothetical protein VspiD_00050 [Verrucomicrobium spinosum DSM
           4136]
          Length = 253

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 20/252 (7%)

Query: 6   HLKRLFVDFP--LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
            L R  +               GD+  +   V+R   GD I  F+G       +I    G
Sbjct: 3   ALARFHIPPSHWQPAGGTLVLDGDEARHCTSVMRHTAGDEITTFDGAGISARCRIVATTG 62

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           K++  +V     +      +  + S  K + ++++++K+VE+G+ AI PV+T  T     
Sbjct: 63  KTVELEVVETLSTPAPAVSISLVQSVPKGSNMEWIVEKAVELGVNAIHPVLTARTV---V 119

Query: 123 NMD---------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
            +D         + +   + A +QC    LP I+PP     ++     +   + A     
Sbjct: 120 KLDKKEAAKKQEKWQRLALEACKQCGQNWLPVIHPPAPYAEVMAGLPPHDLRIIAAIQDD 179

Query: 174 SENSLEKLHAIAHIPNV----AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           S+   E L   A   +V     + +GPEG +   E +T      V P+SLGP ILR +TA
Sbjct: 180 SKPLKEILKDRAKQGSVISSTLLCVGPEGDFTPAEYQTARDHGCV-PMSLGPIILRVETA 238

Query: 230 AVAAMALVQAIC 241
            +  ++++    
Sbjct: 239 TMYGLSVLGHEL 250


>gi|189460815|ref|ZP_03009600.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136]
 gi|189432389|gb|EDV01374.1| hypothetical protein BACCOP_01462 [Bacteroides coprocola DSM 17136]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 7/219 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80
           +   ++  +   VLR+  GD I+L +GK   + + IS   GK  + KV E   +    + 
Sbjct: 14  ELPEEEAGHCLRVLRLTVGDEIMLTDGKGCFYRAAISAATGKRCQVKVNEVIPQEPFWKG 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R+++ ++K+ E+G   +  +  R+++      +R+    +SA +Q  
Sbjct: 74  HLHLAMAPTKNMDRIEWFVEKATEIGFDELSFLNCRFSERKVIKTERIEKIVVSAIKQSL 133

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
               P +         +   +   Q   A    G +  L+ +  +    +  +LIGPEG 
Sbjct: 134 KARKPVVNEMVDFGRFM-QREFAGQKFIAHCYEGEKPLLKDV--LQPGEDAVVLIGPEGD 190

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +  EE E   ++ F   +SLG   LR++TAA+ A+  + 
Sbjct: 191 FSREEVEKAEAMGF-RSISLGKSRLRTETAALVAVHTMN 228


>gi|86608181|ref|YP_476943.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556723|gb|ABD01680.1| conserved hypothetical protein TIGR00046 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 289

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 12/244 (4%)

Query: 5   SHLKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           S L RL +D      +   + +G Q HYL  V R++ GD  L+ +G    W ++    G 
Sbjct: 22  SALPRLAIDPAQRDPSGVLRLTGPQQHYLQRVRRLRPGDLFLVLDGSGKLWAARWQAQGS 81

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            I  +VE   R       +    + +K    D ++++  E+G+  I P++T  T  +   
Sbjct: 82  QIVGEVETLPR--ELPVFLHLGLAVVKGQGFDEVLRQVTELGVARITPLLTERTVLEPGS 139

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI----VFADETCGSENS 177
              +R +     AAEQC+ L  P + PPT     L              +       EN+
Sbjct: 140 GRQERWQKIVREAAEQCERLRWPQVDPPTPWTSWLAELQAVRATRTESFWWGIAVARENA 199

Query: 178 LEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              + A+    IP +AI IGPEGG+   E+        V+ +SLGP ILR+ TAAV A +
Sbjct: 200 PLLVQALPKLQIPALAIAIGPEGGWTVAERRQAEEYGGVS-VSLGPTILRATTAAVVATS 258

Query: 236 LVQA 239
            + A
Sbjct: 259 QIAA 262


>gi|55820236|ref|YP_138678.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           thermophilus LMG 18311]
 gi|55822127|ref|YP_140568.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           thermophilus CNRZ1066]
 gi|55736221|gb|AAV59863.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55738112|gb|AAV61753.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 247

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+              +   ++ +V+R+ E D ++L      + L+++      + 
Sbjct: 1   MQQYFIKG-QVENPVIIKDKNTVKHMFNVMRLTEDDQVVLVFEDGVKRLARVIDRENHVF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+ + QK  E+G  AI        V+    +  
Sbjct: 60  EVIEDLNETVEMPVSVTIASGFPKGDKLELVTQKVTELGAQAIWGFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
               D++    + AAEQ     +P +         L    H  +I  A E       L  
Sbjct: 120 AKKEDKLARIALGAAEQSKRNCVPEVRLFEKKGEFLSELAHFDKIFIAYEETAKAGELAT 179

Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  + +   +  + GPEGG    E +       V  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELAKVENGQKLLFIFGPEGGISPSEIDAFEEAGGVK-IGLGPRIMRTETAPLYALSS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|224024059|ref|ZP_03642425.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM
           18228]
 gi|224017281|gb|EEF75293.1| hypothetical protein BACCOPRO_00776 [Bacteroides coprophilus DSM
           18228]
          Length = 232

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQS 80
           +   ++  +   VLR+  GD ++L +GK   + + IS    K  + K+ E   +    + 
Sbjct: 14  ELPEEEAGHCLRVLRLGMGDEVMLTDGKGCFYKAVISAATNKRCQVKILETIPQEPFWKG 73

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
            +    +P K  +R++++ +K+ E+G   +  +  R+++      +RV    +SA +Q  
Sbjct: 74  HLHLALAPTKNMDRIEWLAEKATEIGFDELSFLNCRFSERKVIKTERVEKIVVSAVKQSL 133

Query: 140 ILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               P +   T   +F+ +++     I    E  G +  L+ +  +    +  +LIGPEG
Sbjct: 134 KARKPVVNEMTDFMKFMERDFPGQKFIAHCYE--GEKPLLKDV--LVPGEDALVLIGPEG 189

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +  EE        F   +SLG   LR++TAA+ A+  +  I
Sbjct: 190 DFSPEEVARAEEKGF-HAVSLGKSRLRTETAALVAVHTMNLI 230


>gi|125622990|ref|YP_001031473.1| hypothetical protein llmg_0111 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491798|emb|CAL96718.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069731|gb|ADJ59131.1| 16S ribosomal RNA methyltransferase RsmE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 250

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 13/245 (5%)

Query: 9   RLFVDFPLC-IKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + FV   L  I  +         H++  V+R + GD + L   +    LS+I        
Sbjct: 4   QYFVFKELPKIGEKFTIENQAAAHHIFTVMRAQAGDQLRLVFEEGTIGLSEIISPADQSV 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYTQNT 120
             +E  + S      V       K ++LD++++KS E+G  AI        V     +  
Sbjct: 64  RLIELLTDSSELPVQVTVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDHKKL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177
               +++    + AAEQ     +P I        L + +    Q++ A E          
Sbjct: 124 TKKQEKLEKVALGAAEQSRRQLIPKIQLFDQFSRLTEQFSDFDQVLVAYEEAAKMGEKSM 183

Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  ++    V I+ GPEGG   +E     +L     + LGPRILR++TA + A++ 
Sbjct: 184 FKQALTELSANQKVLIIFGPEGGISPDEIAKFENLG-AKMIGLGPRILRAETAPLYALSS 242

Query: 237 VQAIC 241
           + A  
Sbjct: 243 ISAYF 247


>gi|306824715|ref|ZP_07458059.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432926|gb|EFM35898.1| RsmE family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 247

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 12/237 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V     
Sbjct: 1   MQQYFVKGSAISPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVDVENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE    +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELVDNVELPIQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
              ++++    + AAEQ     +P I         L   D    I+ A E    E     
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNIVPSIQLFEKKADFLAQLDQFDSIIVAYEESAKEGEVAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            L+ +  +     +  + GPEGG    E E+  +   V    LGPRILR++TA + A
Sbjct: 180 LLQAVAGLEKGAKLLFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYA 235


>gi|57239217|ref|YP_180353.1| 16S ribosomal RNA methyltransferase RsmE [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161296|emb|CAH58217.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 238

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 5/230 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V   +   +  K      HY++ V+R  + D + +FNGKDGEW+ +I  +  +I+ +
Sbjct: 9   RLYVPDSISKHSIIKLDTLASHYISKVMRATKCDYVKIFNGKDGEWIGEICELSNNIKIR 68

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           ++  +R Q K  ++   F  +K   L  +I+++ EMG+  ++P+ T++   ++ N+D+ R
Sbjct: 69  IDKLTRKQVKSKNLTLCFGIVKGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKCR 128

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + I A+EQC+ L +P I  P +   L K    N   +  DET   +   E L    +  
Sbjct: 129 KWAIEASEQCERLDIPQISHPISFTDLKKLDTANINFIICDETGNGKKPAEILT---NKN 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           N+ I++GPEGG+ SEE +      F   LSLG RILR DTA V+A+A V 
Sbjct: 186 NIYIIVGPEGGFSSEELDFA--YTFCNGLSLGTRILRVDTAVVSALAYVN 233


>gi|159899629|ref|YP_001545876.1| 16S ribosomal RNA methyltransferase RsmE [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892668|gb|ABX05748.1| protein of unknown function DUF558 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 247

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 10/242 (4%)

Query: 9   RLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           R FV               +  H   +VLR++ G +I L +G    ++++++ + K    
Sbjct: 6   RFFVPAEAIQGETLAVAERELLHQWNNVLRLRVGQHIALLDGLGMGYIAELTSLNKREAQ 65

Query: 68  KVEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYN 123
               Q  + +     +V    +  +  R +  +QK  E+G  A  P++   +Q   +   
Sbjct: 66  GRILQRYAANGEPSINVTLYLALTRGERFEIALQKCTELGATAFVPLLCERSQADVSATK 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R +     AAEQ     LP ++   T+   L     +  +       G   S +   A
Sbjct: 126 RERWQRIIREAAEQAGRGRLPSLHEAQTVAQALPQARGHLLLA----ETGQTLSFKAALA 181

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +     +AI  GPEGG+   E E       V+ +SLG RILR++TA +AA+A V      
Sbjct: 182 LEPRQELAIWSGPEGGWSDNELEAARQAGLVS-VSLGSRILRAETAPIAALAAVMFQFDQ 240

Query: 244 WY 245
           W+
Sbjct: 241 WF 242


>gi|254374666|ref|ZP_04990147.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572385|gb|EDN38039.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 242

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F D  +  KT     SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIIAIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IK+   + +IQK+ E+G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ +  +     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           I
Sbjct: 240 I 240


>gi|291458017|ref|ZP_06597407.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419349|gb|EFE93068.1| RNA methyltransferase, RsmE family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 268

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 121/269 (44%), Gaps = 33/269 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +   F +     + + +  G+   +L +VLR + G+ +L+ +G+  ++  +++ +G + I
Sbjct: 1   MHHFFAEAADISEREVRLRGENLRHLKNVLRARPGERVLISDGEGTDYECEVAELGEEEI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
             ++ ++       +D+       K++++++++QK+VE+G+  I P+ +R T        
Sbjct: 61  LLRICFREEIHELPADIWLFQGLPKSDKMEFILQKAVELGVRGIVPLESRNTVVRLNPGK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178
                 R +    +AA+Q     +P +  P   +  L    D + +++  +   G+E + 
Sbjct: 121 AAAKRQRWQAIAEAAAKQSKRSIIPEVMLPMRWKDALSLLPDFSLRLIPYENARGAERTR 180

Query: 179 EKLHAIAHI------------------------PNVAILIGPEGGYHSEEKETLHSLPFV 214
           E L  +                             +A+ IGPEGG+  E +        +
Sbjct: 181 ELLLGLRKPWKEAARPAEAGAGAENEKKTPDRRRKIAVFIGPEGGFSEE-EIAEARAAGM 239

Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGD 243
             LSLG RILR++TAA+ A++L+     D
Sbjct: 240 ECLSLGKRILRTETAALCALSLLMLFLED 268


>gi|281423446|ref|ZP_06254359.1| RNA methyltransferase, RsmE family [Prevotella oris F0302]
 gi|281402782|gb|EFB33613.1| RNA methyltransferase, RsmE family [Prevotella oris F0302]
          Length = 240

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 104/233 (44%), Gaps = 8/233 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +V          +   ++  +   VLR++ GD++ L +G+   + +++S    K   + 
Sbjct: 7   FYVPDAASTN---ELPAEEATHALRVLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYT 63

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           + E   + +T +  +    +P K  +R++++ +K+ E+G   +  +   +++      DR
Sbjct: 64  IKENLPQQKTWRGHIHLAIAPTKNIDRMEWLAEKATEIGFDELSFLHCAFSERKVLRADR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185
           +    +SAA+Q     +P +    + +  +       + I    E    ++   ++    
Sbjct: 124 IEKIVVSAAKQSRKPWMPQVNTLESFKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDNQ 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               + +L+GPEG +  +E     +  + + +SLG   LR++TA + A+ + Q
Sbjct: 184 KNEQITVLVGPEGDFSIDEVRLAMAQGYES-ISLGESRLRTETAGLMAVTMAQ 235


>gi|330983201|gb|EGH81304.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 201

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  +
Sbjct: 1   MSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKRV 59

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             ++      Q +    +       +  R+D+ IQK+ E+G+  I P+I+         +
Sbjct: 60  HVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKTTELGVSEITPIISERCEVRLKDE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                    +   ISA EQC    +P I+ P  L   +K+ + + ++V            
Sbjct: 120 RAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHP-------VA 172

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKET 207
           E L +     ++A LIGPEGG +  E   
Sbjct: 173 EPLTSHDKPASLAFLIGPEGGLNDAEVAQ 201


>gi|312144013|ref|YP_003995459.1| protein of unknown function DUF558 [Halanaerobium sp.
           'sapolanicus']
 gi|311904664|gb|ADQ15105.1| protein of unknown function DUF558 [Halanaerobium sp.
           'sapolanicus']
          Length = 250

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 122/251 (48%), Gaps = 15/251 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           + + F+     I  +    G+ Y++L + LR+  GD +++ +    +  +KI S+  +S 
Sbjct: 1   MNKFFIKDSAAIGEKISIQGNDYNHLKNSLRLNIGDRVIVSDKDGFDLEAKIVSFQEESA 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             +V  + +S  + Q +V       K  ++D +++K+ E+G  A+ P+ +  +      +
Sbjct: 61  ELEVINREKSSVEAQLNVVLAQGLPKKRKMDLIVEKATEIGFKAMIPLESERSIVRYNHK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI---YPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                + R +    +AA+Q     +P I   Y  ++L+ L   +D    I++ DE   S 
Sbjct: 121 KKEKKLKRWQRVAEAAAKQSGRSIIPEIKNFYSTSSLKDLKDQFDF-RLILWEDENKFSL 179

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            +    + +    ++ ++IGPEGG+  +E E L +      ++LGPRI+R++TA +AA+ 
Sbjct: 180 KNFFNQNNVKSDASILLIIGPEGGFSEDEVEKLKNDLDAETITLGPRIMRTETAGIAALC 239

Query: 236 LVQA---ICGD 243
            +       GD
Sbjct: 240 CLLYEKGELGD 250


>gi|288800066|ref|ZP_06405525.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333314|gb|EFC71793.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 242

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 105/236 (44%), Gaps = 8/236 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +    L      +   ++  + + VLR++ GD ++L +GK     ++I  + KS   ++
Sbjct: 7   FYAPSALATN---ELPSEEAIHASKVLRLQSGDEMVLIDGKGSFHQAEIVNITKSRCEYQ 63

Query: 69  VEY-QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           + + Q   +T  +++    +P K  +R++++ +K  E+G   +  +  R+++      +R
Sbjct: 64  ITHSQEFPKTWNNNIHLAIAPTKNIDRIEWLTEKITEIGFDELSFLNCRFSERRVVKNER 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185
           +    +SAA+Q     +P +    + +  +       + I          +    L+   
Sbjct: 124 LERIIVSAAKQSRKSWMPQLNEMVSFKEFVSIPHKGLKFIAHCYNQFPKIDLCSTLNKEE 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +V IL+GPEG +  +E E      F   +SLG   LR++TA + A+ + Q   
Sbjct: 184 IKEDVLILVGPEGDFSVDEVEMALKNGF-QSISLGENRLRTETAGLVAVTIAQFAL 238


>gi|89899025|ref|YP_521496.1| 16S ribosomal RNA methyltransferase RsmE [Rhodoferax ferrireducens
           T118]
 gi|89343762|gb|ABD67965.1| protein of unknown function DUF558 [Rhodoferax ferrireducens T118]
          Length = 260

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 31/251 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG------------KDGEW 54
           + R +    L              +   VLR++ GD+I LFNG            + GE+
Sbjct: 1   MPRFYCPTSLRCGDLLDLPASAARH-VQVLRLQPGDSITLFNGGPGWDERDSEHTQGGEF 59

Query: 55  LSKISYVGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112
            + ++ +G+S ++ KV  Y +  +     V          R+D++++K+ E+G+ +I+P+
Sbjct: 60  EASVTRMGRSDVQVKVGAYHAVEREAAHRVHLAVGMPANERMDWLVEKATELGVASIQPL 119

Query: 113 ITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQ 164
           +T  +      +         ++  ++A EQC    +P I+   TL   +K        Q
Sbjct: 120 MTERSVLRLNPERAGKKQAHWQSVAVAACEQCGGNRVPVIHAVMTLAAWIKAQPAQASDQ 179

Query: 165 IVFADETCGSENSLEKLHAIAHIPN-------VAILIGPEGGYHSEEKETLHSLPFVTPL 217
            +      G+++    + A A   +       +  L GPEGG    E++   +  F  P+
Sbjct: 180 RLLLSLRPGAQSVRAAVKAFADPASAGAHTEAITFLSGPEGGLSPAEEDIALACGFA-PV 238

Query: 218 SLGPRILRSDT 228
           +LG R+LR++T
Sbjct: 239 TLGARVLRAET 249


>gi|254373211|ref|ZP_04988700.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570938|gb|EDN36592.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 242

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F D  +  KT     SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFSD--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNNDSLQYKTKIIAIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IKT   + +IQK+ E+G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHISNENNYITNLYQAIIKTENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ +  +     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           I
Sbjct: 240 I 240


>gi|325262826|ref|ZP_08129562.1| RNA methyltransferase, RsmE family [Clostridium sp. D5]
 gi|324031920|gb|EGB93199.1| RNA methyltransferase, RsmE family [Clostridium sp. D5]
          Length = 245

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 30/254 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F +         +  G   +++ +VLRMK G+   + +G   E+L +I    +   
Sbjct: 1   MHRFFTEPSRVHDQVIEIGGPDVNHMKNVLRMKPGEKAEISDGAGIEYLCEIDRYEEDAV 60

Query: 67  FKVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                 S        S +       K+++++ +IQK+VE+G+  I PV T         +
Sbjct: 61  ILRILSSAGEPAELPSKIFLFQGLPKSDKMELIIQKAVELGVHEIIPVATNRAVVKLDEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                 +R  +  +SAA+QC    +P +         L+  D  +  ++  +   G E +
Sbjct: 121 KAAKKTERWNSIALSAAKQCGRSIIPQVAQVKNFGGALEYADGLDVVLIPYELAKGMEET 180

Query: 178 LEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
              + +I    +V I I                     +    +    P++LG RILR++
Sbjct: 181 KRIISSIEPGKSVGIFIGPEGGFEEEE----------IQKAMGMG-ALPVTLGRRILRTE 229

Query: 228 TAAVAAMALVQAIC 241
           TA    ++++    
Sbjct: 230 TAGFTILSVLMYHF 243


>gi|294673777|ref|YP_003574393.1| hypothetical protein PRU_1064 [Prevotella ruminicola 23]
 gi|294472516|gb|ADE81905.1| conserved hypothetical protein TIGR00046 [Prevotella ruminicola 23]
          Length = 231

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 101/225 (44%), Gaps = 5/225 (2%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
            + Q +   D+  +   VLR+K GD + L +G    + ++++       +    +   Q 
Sbjct: 4   AENQTELPTDEAMHAMRVLRLKSGDELFLMDGVGNYFRAQVTVAATHHCYYEILEKLPQE 63

Query: 78  KQS--DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
            Q    +    +P K  +R+++M++K+ E+G+  +  +  ++++     + R+     +A
Sbjct: 64  PQWKGHLHLGIAPTKMMDRMEWMMEKATEVGIDEVSFLNCKFSERRLVKLVRLDKIVTAA 123

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIAHIPNVAIL 193
            +Q      P +         L+      + I    E        ++L   +   +  +L
Sbjct: 124 VKQSHKAWKPQVNEMVHFNHFLEQPIQGRKYIAHCYEEVPRVELFDELRKPSDSQDATVL 183

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +GPEG +  +E +   +  +V+ +SLG   LR++TA +AA+ ++Q
Sbjct: 184 VGPEGDFSIDEVKAAVAAGWVS-VSLGSARLRTETAGLAAVMMMQ 227


>gi|71065526|ref|YP_264253.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter arcticus
           273-4]
 gi|71038511|gb|AAZ18819.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 294

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 107/290 (36%), Gaps = 56/290 (19%)

Query: 7   LKRLFVD---------------FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD 51
           ++R F                   L I    + +    H+   VLR   GD  +LF+G  
Sbjct: 1   MRRFFYAVNDHSNPSETTYPQLSSLSIGDSVELTESIVHHWCRVLRANIGDQGILFDGFG 60

Query: 52  GEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAI 109
           GE+  ++  + K              + +        +  +  R+DY IQKS E+G+ AI
Sbjct: 61  GEYQVQLLAISKKHATVTLLAHTHDDRSAATFTKIGLVMSRGERMDYAIQKSTELGVTAI 120

Query: 110 RPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK------ 157
           + + + + +           +   +   I+A EQC +   P I  P  +   LK      
Sbjct: 121 QLLSSHHGEVNLKPTQVEKKLAHWQQVAIAACEQCGLNRPPLILAPIAINDWLKPVTTTT 180

Query: 158 ------------------------NWDHNCQIVFADETCGSENSLEKLHAI--AHIPNVA 191
                                       + ++  +    G     + L        P + 
Sbjct: 181 PVEMEAAVSPMVTTLSQDTYYQVLQQPADLRLQLSVPAAGQPAMPDSLLTTLQQPAPYIE 240

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +LIGPEGG   EE +   S+ F  P  +G R+LR++TA V A+A +QA+ 
Sbjct: 241 LLIGPEGGLSDEECKQAQSVGF-EPWQIGARVLRTETAPVVALATLQALL 289


>gi|325297370|ref|YP_004257287.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           salanitronis DSM 18170]
 gi|324316923|gb|ADY34814.1| Ribosomal RNA small subunit methyltransferase E [Bacteroides
           salanitronis DSM 18170]
          Length = 235

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 9/231 (3%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK- 68
           F    + +KT+     ++  +   VLR+  GD ++L +G    + + I  + GK  + K 
Sbjct: 4   FYTPDIAVKTE--LPEEEAAHCLRVLRLTMGDEVVLTDGNGFFYKAVIDSIAGKRCQVKI 61

Query: 69  VEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           VE   +    +  +    +P K  +R ++  +K+ E+G   +  +  R+++      +R+
Sbjct: 62  VESIFQEPLWKGHLHVAMAPTKNIDRTEWFAEKATEIGFDELTFLNCRFSERKVIKTERI 121

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               +SA +Q      P +      +  ++  D   Q   A    G +  L+   A+   
Sbjct: 122 EKIVVSAVKQSLKARKPKVNEMIDFDKFVRQ-DFKGQKFIAHCYEGEKLLLK--DALDVR 178

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  +LIGPEG +  EE     S  F  P+SLG   LR++TAA+ A+ L+ 
Sbjct: 179 MDAVVLIGPEGDFSREEVALAESCGF-RPISLGKSRLRTETAALVAVHLMN 228


>gi|297852690|ref|XP_002894226.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297340068|gb|EFH70485.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 295

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R F D  P       +  G ++ ++A VLR+K+ D + LFNGK G     I  + K+ 
Sbjct: 52  LPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTG 111

Query: 66  RFKVEYQSRSQTKQSDVQYI----FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120
              +  + +       +Q+     F  +K  R D++++K  E+G  ++ P++T  +   +
Sbjct: 112 VDFIAQEDQKVILPQGIQWQVFAAFGTLKGGRADWLVEKCTELGASSVTPLLTERSSIIS 171

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+   + +AA+QC  L    + PP   + LL +   +   + A  T  +   L  
Sbjct: 172 ENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFDTLLGHISKSKLCLVA--TAEATPLLNA 229

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +++     +  +++GPEG +  +E E +      T + LGP  LR +TA +A +A +  +
Sbjct: 230 VNSSTKETSGILIVGPEGDFTKKEVEMMLEAG-STAVGLGPHRLRVETATIALLATL-VM 287

Query: 241 CGD 243
             D
Sbjct: 288 WSD 290


>gi|15617012|ref|NP_240225.1| hypothetical protein BU410 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681764|ref|YP_002468150.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|219682319|ref|YP_002468703.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|257471466|ref|ZP_05635465.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11387295|sp|P57488|RSME_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|25345375|pir||G84977 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039077|dbj|BAB13111.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219622052|gb|ACL30208.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219624607|gb|ACL30762.1| 16S rRNA m3U1498 methyltransferase (YggJ) [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311086144|gb|ADP66226.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086718|gb|ADP66799.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087303|gb|ADP67383.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087813|gb|ADP67892.1| 16S ribosomal RNA methyltransferase RsmE [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 253

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +  + R++++  L +      S +  HY+  VLRMK  D + +FN     + +KI  + K
Sbjct: 9   NKKIPRIYIEDDLDLNQFYFLSDENRHYVTKVLRMKIEDILEIFNNTHYIFFAKIIDISK 68

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT--QN 119
            I     ++   +  +S +      +  K  ++D+ IQKS+E+G+  I P+       Q 
Sbjct: 69  KIIKIQTFKKILKNLESPLHIHLGQVISKNEKMDFTIQKSIEIGVKTITPLFFENDHFQK 128

Query: 120 THY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGS 174
                   + R     ISA  QC+   +P I  P  +    + N +++ +I+F       
Sbjct: 129 KRINFSNKIKRWEKIAISACRQCNRNIIPKIKIPMNVFHWCENNQNNDKKIIFHP----- 183

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +++L        I  + I+IG E G+ ++E + +    F+ P+ LGPRILR++TA+V A+
Sbjct: 184 KSTLTMKCLTEPIKYIQIIIGSERGFFNDEFQKIIKYGFI-PIRLGPRILRTETASVVAI 242

Query: 235 ALVQAICGDW 244
             +Q + GD+
Sbjct: 243 TALQTMFGDF 252


>gi|229552377|ref|ZP_04441102.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539747|ref|YP_003174246.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314243|gb|EEN80216.1| protein of hypothetical function DUF558 [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151423|emb|CAR90395.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 242

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F +  L  +           +   VLR   G    L + K   + + +        
Sbjct: 1   MQRFFTEHLLHSQQTFTLEPAIAKHAIKVLRYDVGAVFELADPKHRVYQATVQTTDPLTV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +++      V+ +    K ++ ++++QK+ E+G   I     ++       +  
Sbjct: 61  EIGPEITKNVELPIAVEVVCGVSKGDKTEWIVQKATELGAAKIGFFNAQWGTARWPAERI 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              MDR+ T   +AAEQ     +P +     L  +    D   ++V  +E+         
Sbjct: 121 AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGD--DAAVKLVAYEESAKKGEHAAL 178

Query: 181 LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           + A+  H  ++ ++ GPEGG    E   L +  F TP  LGPRILR++TA +  ++ V  
Sbjct: 179 VSALVPHPASLCVVFGPEGGISPAELALLQARGF-TPAGLGPRILRTETAPLYLLSAVSV 237

Query: 240 IC 241
           + 
Sbjct: 238 LT 239


>gi|162149021|ref|YP_001603482.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787598|emb|CAP57194.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 250

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 8   KRLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            RLF D     P+        +  Q HYL  VLR+  GD + LFN +DGEWL++I  + +
Sbjct: 5   PRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRR 64

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              + ++  Q R+    +    +F+P+K +  D +++   E+G+    PV+T  T     
Sbjct: 65  DRGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRV 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N  R+ T    AAEQC+ L +P I  P  L   L  W    ++  A E          + 
Sbjct: 125 NEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIE 184

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +A      +LIGPEGG+   E   L + PFV  +SLG  ILR+DTA    ++L+ A
Sbjct: 185 DVADGD--GLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239


>gi|329766974|ref|ZP_08258502.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341]
 gi|328837699|gb|EGF87324.1| hypothetical protein HMPREF0428_00199 [Gemella haemolysans M341]
          Length = 249

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64
           +++ F++  L +++  + S D  +++  ++R K  D + +    + +++  I    V K 
Sbjct: 1   MQQYFLNEELNVESTYELSKDDSNHIVRIMRKKINDKVYVVFNNEIKYICNIIDNNVDKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           +    E    S    + +     P+K ++++Y+IQK  E+G+  I    +          
Sbjct: 61  LITPYEQVDGSNELPTKITVAIPPLKNDKIEYLIQKLTELGVSNIILFNSERNIAKIKKD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSE-- 175
                ++R       AAEQ     +P I    +L+ L L + +++ ++V  ++   +E  
Sbjct: 121 KVDSKLNRWNKIIKEAAEQSKRNIIPDITYVDSLKELILFSENYDYKVVAYEKESVNEDN 180

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N    L++  +  NV  + G EGG   +E   L    F   + LG RILR++TA +  +
Sbjct: 181 VNFKRLLNSDLNNKNVIAVFGSEGGLSEQEIYNLLDDNF-EVIGLGKRILRAETAPLYFV 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SCVSY 244


>gi|332184390|gb|AEE26644.1| Ribosomal RNA small subunit methyltransferase E [Francisella cf.
           novicida 3523]
          Length = 242

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 123/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F +  +  KT     SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFCE--ISTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNSDSLQYKTKIIAIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IK+   + +IQK+ E+G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHINNENNYITNLYQAIIKSENFELVIQKATELGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   ++   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-IQIPQNDLNLVLCPYTQTKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ +  +     I IGPEGG+   E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KIKSSTNFN---IFIGPEGGFSDREMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           I
Sbjct: 240 I 240


>gi|330998339|ref|ZP_08322163.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT
           11841]
 gi|329568445|gb|EGG50250.1| RNA methyltransferase, RsmE family [Paraprevotella xylaniphila YIT
           11841]
          Length = 254

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 20/246 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           R F    + +  +     D+  +   VLR++ GD I L +GK   + ++I+   GK   F
Sbjct: 5   RFFYAPDVAVDDE--LPADEAAHCLRVLRLQAGDEIRLTDGKGMFYKAEITTATGKRCLF 62

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           KV E     +     +    +P K  +R++++ +K+ E+G   +  +  RY++      +
Sbjct: 63  KVLEAVPHPKEWSGHLHLALAPTKNMDRIEWLAEKATEIGFDELTFLDCRYSERKVVKTE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEK---- 180
           R+    +SA +Q      P +      +  +   +     I    +        +     
Sbjct: 123 RIDKILVSAMKQSHKARKPLLNGMEDFKRFVDRPFAGQKFIAHCYDEADVAGVAKASEDK 182

Query: 181 ---------LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                    L  +    +  +L+GPEG +   E     +  F   +SLG   LR++TA +
Sbjct: 183 AMDGGKPFLLDELDTGQDALVLVGPEGDFSINEVRLAQAHGF-RSVSLGRSRLRTETAGL 241

Query: 232 AAMALV 237
            A+ L+
Sbjct: 242 VAVHLM 247


>gi|301066583|ref|YP_003788606.1| hypothetical protein LCAZH_1524 [Lactobacillus casei str. Zhang]
 gi|300438990|gb|ADK18756.1| conserved hypothetical protein [Lactobacillus casei str. Zhang]
          Length = 246

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F D  L      +       +   VLR   GD   L +     +L+ I        
Sbjct: 1   MQRYFTDQKLKTGDVVQLDATIAKHAIKVLRQDIGDRFELVDPTHHAYLAIIQQSSPLQV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
              E  ++       V+ +    K ++ ++++QK+ E+G   I     ++       +  
Sbjct: 61  AIDEDITKKVELPLAVEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERV 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R++    +AAEQ     +P +     L  +        ++V  +E+         
Sbjct: 121 VKKIARLQEIAKNAAEQSHRNQVPDVTMYAKLNQV--GQTAEAKLVAYEESAKQGEHGAL 178

Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           + A++  P ++ ++ GPEGG   EE   L    F+    LGPRILR++TA +  ++ V  
Sbjct: 179 ISALSPRPASLCVVFGPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETAPLYLLSAVSV 237

Query: 240 IC 241
           + 
Sbjct: 238 LT 239


>gi|223938953|ref|ZP_03630839.1| protein of unknown function DUF558 [bacterium Ellin514]
 gi|223892380|gb|EEF58855.1| protein of unknown function DUF558 [bacterium Ellin514]
          Length = 251

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R ++    C +     +  + H+   VLR++EG+ +++ +G   E L +     K  +
Sbjct: 1   MHRFYLPPEECKENTLILTDREAHHALQVLRLREGEKLVVLDGAGQEILCEAQKAEKDQL 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
           + KV  ++        +    +  K   ++ +IQK+ E+G   I P+++         + 
Sbjct: 61  KLKVLQRNFQPQLPYQITLFQAIPKGKIIETIIQKATELGAFRIVPLLSDRVVTQLDDEG 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +++ +   I A +QC    LP +  P + +  L   +     +         +  E
Sbjct: 121 AASKVEKWKQTAIEAIKQCGSPWLPQVDAPVSPKDYLARGEKFELPLIGSLQNDCRHPRE 180

Query: 180 KLHAIAH-----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 +        V+I IGPEG +   E   + S   V P++LG  +LRS+TAA+ ++
Sbjct: 181 YFKTFHNERKRLPKTVSIWIGPEGDFTPAEMNLIKSAG-VLPITLGKLVLRSETAAIYSL 239

Query: 235 ALVQAIC 241
           +++    
Sbjct: 240 SVLNYEL 246


>gi|78188184|ref|YP_378522.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
           chlorochromatii CaD3]
 gi|78170383|gb|ABB27479.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 247

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 17/242 (7%)

Query: 10  LFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
            +           Q    G+++H+L  VLR +EG+ IL+ +G       +I+ + K  ++
Sbjct: 4   FYTPTEQIHPATNQVSIEGEEFHHLVRVLRKREGELILVTDGNGLRCEVRIASISKHDVQ 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            ++   +  +   + V    S +K   R ++ ++K+ E+G+  I P++T  T        
Sbjct: 64  GEIISTTTIEPPSTRVTVALSLLKNPQRFEWFLEKATELGISTIIPMVTARTVVQPSNDR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            H  + R RT  +SAA Q     LP +  P     +L    ++ + +  +    S     
Sbjct: 124 VHNKLKRWRTIVLSAARQSKRYYLPQVVEPQRFSDVLNRSGYDERCMPFEAATSS----P 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            LH      N+  LIG EGG+ +EE +   +      +SLG  ILR++TAA+ A+A V++
Sbjct: 180 TLHCA--GKNILFLIGGEGGFSAEEVQQAEATG-CRTMSLGTTILRAETAALFAVAYVRS 236

Query: 240 IC 241
             
Sbjct: 237 QL 238


>gi|303237747|ref|ZP_07324307.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN]
 gi|302482199|gb|EFL45234.1| RNA methyltransferase, RsmE family [Prevotella disiens FB035-09AN]
          Length = 239

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 100/234 (42%), Gaps = 8/234 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F   P    T  +   ++  +   VLR+K GD I L +G+   + ++++   +     
Sbjct: 5   RYFY-VPNAANTN-ELPTEEATHAVRVLRLKSGDEIYLMDGEGTFFQAEVTLASQKHCLY 62

Query: 69  VEYQSRSQT--KQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
              ++  Q     S +    +P K   R++++++K  E+G   I  +  ++++      D
Sbjct: 63  NIKKAIPQEKTWNSKIHLAIAPTKDIGRIEWLVEKVTEVGFDEISFLNCKFSERKSLRSD 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAI 184
           R+    +SA +Q      P +      +  + K++     I          +    ++ +
Sbjct: 123 RIERIVVSAMKQSRKPWKPIVNELINFDDFINKDFKGAKYICHCYNEIEKIDFFNSIN-L 181

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               N+ +LIGPEG +  EE     +  +   ++LG   LR++TA +AA+ +  
Sbjct: 182 QTTENITVLIGPEGDFSIEEVRKALANGY-QSVTLGNSRLRTETAGLAAVMMAN 234


>gi|227538374|ref|ZP_03968423.1| protein of hypothetical function DUF558 [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241756|gb|EEI91771.1| protein of hypothetical function DUF558 [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 7/227 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67
            +             + ++  +   VLR+   D + L +G+ G + ++I      ++   
Sbjct: 4   FYTPEIEPHFANFILTEEESKHAVRVLRLANRDQVHLIDGRGGFYRAEIIDAHPKRTALQ 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +E Q   Q     +    +P K   R ++ ++K+ E+G+  I PVI+ +++      DR
Sbjct: 64  IIEIQEAFQKPSYHLHMAVAPTKNIERFEWFLEKATEVGVQEITPVISEHSERKEVKPDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185
           +    ++A +Q     +P + P  TL   LK  +  + Q   A      +  L ++    
Sbjct: 124 LNKVIVAAMKQSYKAYMPKLNPAITLTNFLKQQEQVSAQKAIAHCVDSEKKYLGQV--FT 181

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              +  ILIGPEG + +EE     S  FV P+SLG   LR++TAA+ 
Sbjct: 182 PQQDYVILIGPEGDFSTEEISKTISSGFV-PISLGEARLRTETAALT 227


>gi|170078905|ref|YP_001735543.1| hypothetical protein SYNPCC7002_A2310 [Synechococcus sp. PCC 7002]
 gi|169886574|gb|ACB00288.1| conserved hypothetical protein (DUF558) [Synechococcus sp. PCC
           7002]
          Length = 236

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 13/240 (5%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++RL V        ++   + +Q HYL  VLR++ GD +++ NG    WL +++   +  
Sbjct: 1   MQRLVVSEAQFTDLSRVNLTTEQRHYLLSVLRLRAGDRLIVLNGLGQAWLGELTETEE-- 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123
              +E Q         V+ + +  K    D +++   E+G+  I PVI+  T  + +   
Sbjct: 59  IQLIESQHLQTECPIPVKLVAALPKNG-FDEVVRCCTELGVTQIYPVISERTILKPSENK 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           + R R     AAEQ +   +P I  P     LL+        +        E SL  L A
Sbjct: 118 LKRWRKIATEAAEQSERAIVPKIETPQPFLQLLETLSPEQTYLC----GAREKSLHLLDA 173

Query: 184 IAH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +     P + +LIGPEGG+   E +   +   +  +SLG  ILR+ TA++ A+ALV + C
Sbjct: 174 LPKTLPPEITVLIGPEGGWTETEIQQAIAKG-MPVVSLGNSILRAVTASITAIALVNSHC 232


>gi|253681363|ref|ZP_04862160.1| conserved surface protein [Clostridium botulinum D str. 1873]
 gi|253561075|gb|EES90527.1| conserved surface protein [Clostridium botulinum D str. 1873]
          Length = 251

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 94/257 (36%), Gaps = 31/257 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           + + F+             G+   ++  VLR+KEG+ + + N    E+L  I Y+ K  +
Sbjct: 1   MHKFFISEDKIFSDLSIIEGEDVKHIYKVLRLKEGEKVNINNCNGKEFLGIIDYIDKTKV 60

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------- 117
             K+  +     +    V       K+ ++D + QK  E+G+  I P++T          
Sbjct: 61  EVKLLKELEVNNEPPIEVYLFQGLPKSTKMDLITQKCTELGVKDITPIVTSRVSSSINDI 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     +DR       A +Q     +P +                  IV   E   +   
Sbjct: 121 KRESKKLDRWNRIAFEACKQNKRTLIPVVNDIIDFHEFTDKLKDMDLIVVPYENAENYGI 180

Query: 178 LEKLHAIA-HIPNVAILIGPEGGYHSEE----------KETLHSLPFVTPLSLGPRILRS 226
            +    +   +  +AI+I                      +L ++     ++LGPRILR+
Sbjct: 181 KQMTRGLKSEVKKIAIVI----------GPEGGFEEEEITSLKNMG-AHIVTLGPRILRT 229

Query: 227 DTAAVAAMALVQAICGD 243
           +TA    +AL+    GD
Sbjct: 230 ETAGFTCLALLMYELGD 246


>gi|94989324|ref|YP_597425.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS9429]
 gi|94993212|ref|YP_601311.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS2096]
 gi|94542832|gb|ABF32881.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429]
 gi|94546720|gb|ABF36767.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096]
          Length = 249

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEILPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|300770808|ref|ZP_07080686.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762365|gb|EFK59183.1| RsmE family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 237

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 7/227 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67
            +             + ++  +   VLR+   D I L +G+ G + ++I      ++   
Sbjct: 4   FYTPEIESHFANFILTEEESKHAIRVLRLANRDQIHLIDGRGGFYRAEIIDAHPKRTTLQ 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            +E Q   Q     +    +P K   R ++ ++K+ E+G+  I PVI+ +++      DR
Sbjct: 64  IIEIQEAFQKPSYHLHMAVAPTKNIERFEWFLEKATEVGVQEITPVISEHSERKEVKPDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185
           +    ++A +Q     +P + P  TL   LK  +  + Q   A      +  L ++    
Sbjct: 124 LNKVIVAAMKQSYKAYMPKLNPAMTLTNFLKQQEQVSAQKAIAHCVDSEKQYLSQV--FT 181

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              +  ILIGPEG + +EE     S  FV P+SLG   LR++TAA+ 
Sbjct: 182 PQQDYVILIGPEGDFSTEEIGKTISSGFV-PISLGEARLRTETAALT 227


>gi|153953539|ref|YP_001394304.1| 16S ribosomal RNA methyltransferase RsmE [Clostridium kluyveri DSM
           555]
 gi|219854161|ref|YP_002471283.1| hypothetical protein CKR_0818 [Clostridium kluyveri NBRC 12016]
 gi|146346420|gb|EDK32956.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219567885|dbj|BAH05869.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 251

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 37/260 (14%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + FV             GD   ++  VLR+K GD + + N    E+L  I  + +   
Sbjct: 1   MNKFFVPQEDINFNTAHIKGDDLKHIHKVLRLKIGDKVNINNCHGKEFLGVIDSIEREKV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----N 119
               VE           V       K++++D ++QK+ E+G+  I P+IT          
Sbjct: 61  TVNIVEELKLYNESPLKVYLFQGLPKSSKMDLVVQKATELGIWEITPIITNRVAIKGDFK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               +DR     + A +QC    +P + PP   E LLK   +   IV   E   S    +
Sbjct: 121 EFKRVDRWNKIALEACKQCKRSIIPAVKPPIYFEELLKYLSNMDLIVVPYEMEKSIGIKK 180

Query: 180 KLHAIA---HIPNVAILIGPEGGYHSEEKETLHSLPFV-------------TPLSLGPRI 223
            + +I     I ++AI+I                                   ++LGPRI
Sbjct: 181 VIDSIEYRDSIGDIAIVI--------------GPEGGFEEEEIEELKNISSKIVTLGPRI 226

Query: 224 LRSDTAAVAAMALVQAICGD 243
           LR++TA     AL+    GD
Sbjct: 227 LRTETAGFVCTALLMYELGD 246


>gi|159030659|emb|CAO88329.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 233

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 9/235 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL +DF          + +Q HYL  V+R+K  D  +  NG+   WL++I      +   
Sbjct: 4   RLLLDFNTLENGLITLTPEQSHYLKKVVRLKSHDRFIALNGQGQAWLAEIIDNSAHL--- 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           +E  + +      V  + +  K    D +++ + E+G+  I P++T       +   +DR
Sbjct: 61  LEAINETSELPVQVNLMVAIPKNG-FDDIVRAATELGVYRIIPLLTERGLVNPSPQKIDR 119

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     A EQ +   +P I  P     +LK                       L  +  
Sbjct: 120 WRKIAREAVEQSERQIIPIIEEPQPFLAILKR--GANPQTTCYIGVTRRTVAPLLSQLQT 177

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              + + IGPEGG+   E E   +  FV P+SLG RILR+ TA + A+A++ A  
Sbjct: 178 STEITMAIGPEGGWTETEIEQAIAADFV-PVSLGKRILRTITAPLVALAIINAYL 231


>gi|332662267|ref|YP_004445055.1| ribosomal RNA small subunit methyltransferase E [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331081|gb|AEE48182.1| Ribosomal RNA small subunit methyltransferase E [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 285

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQ-SR 74
            + +  +   ++  +L  VLR   G  + + +GK   + +++  +GK + R K+  Q  +
Sbjct: 60  IVGSLLELDEEETRHL-QVLRYTPGRILSVVDGKGNWYEAELLELGKKLARAKINTQKQQ 118

Query: 75  SQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
           +Q K   +    +P K   RL++ ++K+ E+G+  I P++ R+++ T    DR+   T+S
Sbjct: 119 TQRKPYHLHVAIAPTKNIERLEWFLEKATEIGVDEITPILCRHSERTQVRQDRLEKITLS 178

Query: 134 AAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           A +Q     LP + P   L+  L    + + Q   A  T      L++ +      +V I
Sbjct: 179 AMKQSLKTFLPRLNPLQPLKTFLPAQANFSGQKCIAWITDPPAALLQQTYQ--RGQSVMI 236

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +IGPEG +  EE E      F  P+SLG   LR++TA V A+  +
Sbjct: 237 VIGPEGDFAPEEIELATQCNFA-PVSLGQSRLRTETAGVVAVHTI 280


>gi|241890108|ref|ZP_04777406.1| ribosomal RNA small subunit methyltransferase E [Gemella
           haemolysans ATCC 10379]
 gi|241863730|gb|EER68114.1| ribosomal RNA small subunit methyltransferase E [Gemella
           haemolysans ATCC 10379]
          Length = 249

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64
           +++ F++  L +++  + S D  +++  ++R K  D + +    + +++  I    V K 
Sbjct: 1   MQQYFINEDLNVESTYELSKDDSNHIVRIMRKKIEDKVYVVFNNEIKYICTIVDNNVDKV 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           +    E    +    + +     P+K ++++Y++QK  E+G+  I    +          
Sbjct: 61  LITPYEQVIGTNELSTKITVAIPPLKNDKIEYLMQKLTELGVSNIVLFNSERNIAKIKKD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET----CGS 174
                ++R       AAEQ     +P I    +L+ L+   +     V A E       +
Sbjct: 121 KVDSKLNRWNKIVKEAAEQSKRNVIPDITYVDSLKDLIVFSEKFDSKVVAYEKESVNEEN 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            N    LH+      V  + G EGG   +E + L    F   + LG RILR++TA +  +
Sbjct: 181 INLKNLLHSDLSNKEVIAVFGSEGGLSEQEVDFLTENKF-DVIGLGKRILRAETAPLYFV 239

Query: 235 ALVQA 239
           + V  
Sbjct: 240 SCVAY 244


>gi|284036271|ref|YP_003386201.1| hypothetical protein Slin_1352 [Spirosoma linguale DSM 74]
 gi|283815564|gb|ADB37402.1| protein of unknown function DUF558 [Spirosoma linguale DSM 74]
          Length = 239

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 100/233 (42%), Gaps = 5/233 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +    +  +     + D   +    LR++ GD I + +G   ++ + I     +   F+
Sbjct: 4   FYQPEIIAGEATQHLTEDDSRHAIKTLRLRAGDAITVTDGHGNQYAAVIHETDLRQCAFR 63

Query: 69  VEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           ++    +  +   V+   +P K  +R+++ ++K+VE+G+  I     ++++     ++R+
Sbjct: 64  IKAVQTTPPRPFSVRICVAPTKNLDRIEWFVEKAVEVGIERISFFFGQHSERRVLKLERI 123

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I+A +Q     LP +    +   +LK      + +       ++  +         
Sbjct: 124 EKIAIAAMKQSLQSFLPKLDDAVSFGEMLKTIGDEQRFIAH--LPANQPLVNLAKQATEA 181

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               +LIGPEG +   E +   +  F    +LGP  LR++TAA+ A  ++  I
Sbjct: 182 GQYVVLIGPEGDFSDTEIQQALAAGFQVA-TLGPNRLRTETAALTACQILNFI 233


>gi|209545229|ref|YP_002277458.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532906|gb|ACI52843.1| protein of unknown function DUF558 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 250

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 115/237 (48%), Gaps = 7/237 (2%)

Query: 8   KRLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            RLF D     P+        +  Q HYL  VLR+  GD + LFN +DGEWL++I  + +
Sbjct: 5   PRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRR 64

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              + ++  Q R+    +    +F+P+K +  D +++   E+G+    PV+T  T     
Sbjct: 65  DRGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRV 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N  R+ T    AAEQC+ L +P I  P  L   L  W    ++  A E          + 
Sbjct: 125 NEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGAGGIE 184

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +A      +L+GPEGG+   E   L + PFV  +SLG  ILR+DTA    ++L+ A
Sbjct: 185 DVADGD--GLLVGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGA 239


>gi|258508566|ref|YP_003171317.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148493|emb|CAR87466.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259649873|dbj|BAI42035.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 242

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F +  L  +           +   VLR   G    L + K   + +K+        
Sbjct: 1   MQRFFTEHLLHSQQTVTLEPAIAKHAIKVLRYDVGAVFELADPKHRVYQAKVQTTDPLTV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +++      V+ +    K ++ ++++QK+ E+G   I     ++       +  
Sbjct: 61  EIGPEITKNVELPIAVEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERI 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              MDR+ T   +AAEQ     +P +     L  +    D   ++V  +E+         
Sbjct: 121 AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGD--DAAVKLVAYEESAKKGEHAAL 178

Query: 181 LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           + A+  H  ++ ++ GPEGG    E   L +  F TP  LGPRILR++TA +  ++ V  
Sbjct: 179 VSALVPHPASLCVVFGPEGGISPAELALLQARGF-TPAGLGPRILRTETAPLYLLSAVSV 237

Query: 240 IC 241
           + 
Sbjct: 238 LT 239


>gi|88607769|ref|YP_505371.1| hypothetical protein APH_0794 [Anaplasma phagocytophilum HZ]
 gi|88598832|gb|ABD44302.1| conserved hypothetical protein TIGR00046 [Anaplasma phagocytophilum
           HZ]
          Length = 239

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 9/230 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            + D  L    +     DQ HY+  V+R++  D ++LF+G  G+W + IS +  K +  +
Sbjct: 13  YYSDSALNKGEKVLLRSDQAHYIRDVMRVRISDAVVLFDGVTGDWFATISEISRKKVEVR 72

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           VE+      K  D+    + +K + +  +++++ EMG+  I+P+ T Y+  +  N+ + R
Sbjct: 73  VEHLVSEYVKSRDLMLCIALVKQDTMRSVVRQATEMGVTQIQPIRTEYSVVSDINVQKCR 132

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + I AAEQC+   +P I        L    D   ++V  DET       E L +     
Sbjct: 133 QWAIEAAEQCERQDIPEIASVMEFTHL---NDLGKKLVLCDETGKGRMPAEVLRS---KE 186

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           N+ I+IGPEGG+   E     S  F   +SLG RILR DTA VAA+A V 
Sbjct: 187 NLGIIIGPEGGFSERELVCAES--FCEKMSLGHRILRVDTAVVAALAYVN 234


>gi|239631385|ref|ZP_04674416.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525850|gb|EEQ64851.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F D  L      +       +   VLR   GD   L +     +L+ I        
Sbjct: 1   MQRYFTDQKLKTGDVVQLDATIAKHAIKVLRQDIGDRFELVDPTHHAYLAIIQQSSPLQV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
              E  ++       V+ +    K ++ ++++QK+ E+G   I     ++       +  
Sbjct: 61  AIDEDITKKVELPLAVEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERV 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R++    +AAEQ     +P +     L  +        ++V  +E+         
Sbjct: 121 VKKIARLQEIAKNAAEQSHRNQVPDVTMYAKLNQV--GQTAEAKLVAYEESAKQGEHGVL 178

Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           + A++  P ++ +  GPEGG   EE   L    F+    LGPRILR++TA +  ++ V  
Sbjct: 179 ISALSPRPASLCVFFGPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETAPLYLLSAVSV 237

Query: 240 IC 241
           + 
Sbjct: 238 LT 239


>gi|319717302|ref|YP_001649575.3| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii
           str. Iowa]
 gi|165907873|gb|ABY72169.1| hypothetical protein RrIowa_0258 [Rickettsia rickettsii str. Iowa]
          Length = 257

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 12/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFNG DGE+L++I+
Sbjct: 14  MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 69

Query: 60  YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            +GK   S+R K   Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+
Sbjct: 70  DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 127

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q    N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 128 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 185

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ ++    ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 186 SILRISSLLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234


>gi|253580713|ref|ZP_04857977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848084|gb|EES76050.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 248

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 108/256 (42%), Gaps = 32/256 (12%)

Query: 7   LKRLFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R FV+     K   +   +G   +++ +VLRMK G+++ + +G D E+  +I  +G+ 
Sbjct: 1   MQRFFVEPYQIEKEAHRIHINGTDVNHIKNVLRMKCGEDVWISDGGDKEYHCQIEELGED 60

Query: 65  IRFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                    Q       + +       K ++++ +IQK+VE+G  +I PV T+       
Sbjct: 61  EVLLHILYAQEPEYELPNKIYLFQGLPKADKMELIIQKAVELGAFSIIPVETKRCVVKLD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175
            +     + R +    SAA+Q   + +P I+   T +  L+     + +++  +   G +
Sbjct: 121 VKKAAKKVVRWQQIAESAAKQSKRMLIPEIHEVMTYKQALEFAKQLDVKLIPYELAKGMK 180

Query: 176 NSLEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            + E L  I    +V I I                                ++LG RILR
Sbjct: 181 ETREILSEIKPGQSVGIFIGPEGGFEEEE----------VAKALEAG-AHAITLGRRILR 229

Query: 226 SDTAAVAAMALVQAIC 241
           ++TA +A ++++    
Sbjct: 230 TETAGLAILSVLMFQL 245


>gi|163847399|ref|YP_001635443.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525248|ref|YP_002569719.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus sp.
           Y-400-fl]
 gi|163668688|gb|ABY35054.1| protein of unknown function DUF558 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449127|gb|ACM53393.1| protein of unknown function DUF558 [Chloroflexus sp. Y-400-fl]
          Length = 252

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 9/241 (3%)

Query: 8   KRLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +R FV+       Q +       H    VLR++ GD ++L +G+    + +I+++ +   
Sbjct: 12  RRFFVNPGWLRTDQVEIDDAAIIHQWERVLRLRAGDRVMLLDGQGLAAIVEITHIDRRRA 71

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
               V     S           + I+  R ++ IQK+VE+G+  I PV    +    +  
Sbjct: 72  RGQVVARCQASGEPAVTFDLYLALIRPERFEWAIQKAVELGVYRIVPVTFARSLITGRID 131

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            + + R +     AAEQ     LP +  P +    L         +  DE   + +    
Sbjct: 132 EHRLARWQRIATEAAEQAGRGRLPVVAEPQSFAAALTRAHTADLAILLDE-QATVHLRTV 190

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L     +  +AI  GPEGG    E+   H    +  +SLGPRILR++TA + A+A++Q  
Sbjct: 191 LPPQPSLRQIAIYSGPEGGIDPAERTAAHQHG-IQSVSLGPRILRAETAPLVALAMLQYA 249

Query: 241 C 241
            
Sbjct: 250 L 250


>gi|299142603|ref|ZP_07035734.1| RNA methyltransferase, RsmE family [Prevotella oris C735]
 gi|298576038|gb|EFI47913.1| RNA methyltransferase, RsmE family [Prevotella oris C735]
          Length = 240

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 103/233 (44%), Gaps = 8/233 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +V          +   ++  +   VLR++ GD++ L +G+   + +++S    K   + 
Sbjct: 7   FYVPDAASTN---ELPAEEATHALRVLRLQNGDDMYLMDGRGNFYHAEVSLATHKKCLYT 63

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           + E   + +T +  +    +P K  +R++++ +K+ E+G   +  +   +++      DR
Sbjct: 64  IKENLPQQKTWRGHIHLAIAPTKNIDRMEWLAEKATEIGFDELSFLHCAFSERKVLRADR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185
           +    +SA +Q     +P +    + +  +       + I    E    ++   ++    
Sbjct: 124 IEKIVVSAVKQSRKPWMPQVNALESFKDFITRPREGRKFIAHCYEEIEKKDFFNEIMDDQ 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               + +L+GPEG +  +E     +  + + +SLG   LR++TA + A+ + Q
Sbjct: 184 KNEQITVLVGPEGDFSIDEVRLAMAQGYES-ISLGESRLRTETAGLMAVTMAQ 235


>gi|94991269|ref|YP_599369.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS10270]
 gi|94544777|gb|ABF34825.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270]
          Length = 249

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTVT-DKDTIKHMFQVMRLTDEAEVILVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LKN      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEQKAEFLKNLPSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|193211908|ref|YP_001997861.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobaculum parvum NCIB
           8327]
 gi|193085385|gb|ACF10661.1| protein of unknown function DUF558 [Chlorobaculum parvum NCIB 8327]
          Length = 247

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%)

Query: 10  LFV-DFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            +V    L +   +    G+++H+LA VLR +EGD + + +G        +  +GKS ++
Sbjct: 4   FYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQ 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             +    R    ++ V    S +K   R D+ ++K+ E+G+  I P+IT+ T      + 
Sbjct: 64  GSIRNPRRVPPPETRVSVAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKK 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R R    SAA Q     LP +  P + +  L+   ++ +++ A E+  +    E
Sbjct: 124 IDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLI-AHESEEAFGPFE 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                     V   IGPEGG+   E         V P+S G  +LR++TA V A+ALV+A
Sbjct: 183 -----PAGQCVLFFIGPEGGFSEAEIAAAAQSG-VRPVSFGASVLRAETAGVFAVALVRA 236

Query: 240 IC 241
             
Sbjct: 237 AL 238


>gi|251781649|ref|YP_002995951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390278|dbj|BAH80737.1| hypothetical protein SDEG_0220 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 252

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      +       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGIKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 ISYAL 243


>gi|116495024|ref|YP_806758.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334]
 gi|191638529|ref|YP_001987695.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           casei BL23]
 gi|227534966|ref|ZP_03965015.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116105174|gb|ABJ70316.1| hypothetical protein LSEI_1541 [Lactobacillus casei ATCC 334]
 gi|190712831|emb|CAQ66837.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus
           casei BL23]
 gi|227187423|gb|EEI67490.1| protein YqeU [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327382565|gb|AEA54041.1| hypothetical protein LC2W_1708 [Lactobacillus casei LC2W]
 gi|327385762|gb|AEA57236.1| hypothetical protein LCBD_1740 [Lactobacillus casei BD-II]
          Length = 246

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F D  L      +       +   VLR   GD   L +     +L+ I        
Sbjct: 1   MQRYFTDQKLKTGDVVQLDATIAKHAIKVLRQDIGDRFELVDPMHHAYLAIIQQSSPLQV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
              E  ++       V+ +    K ++ ++++QK+ E+G   I     ++       +  
Sbjct: 61  AIDEDITKKVELPLAVEVVCGVSKGDKSEWIVQKATELGADKIGFFNAQWGTARWPAERV 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R++    +AAEQ     +P +     L  +        ++V  +E+         
Sbjct: 121 VKKIARLQEIAKNAAEQSHRNQVPDVTMYAKLNQV--GQTAEAKLVAYEESAKQGEHGAL 178

Query: 181 LHAIAHIP-NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           + A++  P ++ ++ GPEGG   EE   L    F+    LGPRILR++TA +  ++ V  
Sbjct: 179 ISALSPRPASLCVVFGPEGGLAPEELSVLTGQGFIAA-GLGPRILRAETAPLYLLSAVSV 237

Query: 240 IC 241
           + 
Sbjct: 238 LT 239


>gi|118581365|ref|YP_902615.1| 16S ribosomal RNA methyltransferase RsmE [Pelobacter propionicus
           DSM 2379]
 gi|118504075|gb|ABL00558.1| protein of unknown function DUF558 [Pelobacter propionicus DSM
           2379]
          Length = 248

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R  +             GD + ++  VLR+  G ++ L + +  E    I  V K    
Sbjct: 4   RRFMISSRSIQDNHAWLEGDLFSHMVRVLRLGPGASVTLVDEQGAEHRGSIQQVEKERVM 63

Query: 68  KVEYQS----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR------PVITRYT 117
                S      + +   +    +  K  + D ++QK  E+G+   R       V     
Sbjct: 64  VRIAGSVVPGNGEGETPAITICQALPKGEKTDLILQKGTELGVHDFRLFAGCRSVARVRE 123

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     ++R    T  AA QC    +P +      E    + DH  +++   E    +  
Sbjct: 124 EQHKGKLERWNRITAEAARQCGRRRIPAVSWFPDAERAAGSCDHELRLLLW-EGERRQGL 182

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L  +    +  + IGPEGG+   E        F+ P+SLG R+LR++TA++A  A++
Sbjct: 183 KNALEQLPRPASAIVAIGPEGGFDPREVRCFIGHGFL-PVSLGKRVLRTETASLAITAIL 241

Query: 238 QAICG 242
           Q I G
Sbjct: 242 QYIWG 246


>gi|256847109|ref|ZP_05552555.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715773|gb|EEU30748.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 248

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 12/246 (4%)

Query: 7   LKRLFVDFPL-CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           ++R F+      I  +        H+   VLR + G    L    +  + + +     + 
Sbjct: 1   MQRYFIHQAQPHINEKLSLPSSVAHHFITVLRAEPGTQCELVFDNEHVYRASLIDSKIAQ 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +E   ++              K   + + ++QK+ E+G   +       +       
Sbjct: 61  VEVLEDLQQNAELPVHPILACGLPKTKGKPELIVQKATELGADEVIFFEAARSVSHWATN 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                + R++     AAEQ     LP I     L  +L+      ++V  +E+     + 
Sbjct: 121 KQTKKIARLQKIANGAAEQSHRNRLPQISYLPDLATVLQQTSAEQKVVAWEESAKQGETS 180

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                L        +  + GPEGG   +E   + +   V P+ LGPRILR++TA +  ++
Sbjct: 181 ALATVLQQTKSDDRMLAIFGPEGGLTEDEITQMQAAG-VVPVGLGPRILRTETAPLYLLS 239

Query: 236 LVQAIC 241
            +    
Sbjct: 240 AISFAT 245


>gi|56808290|ref|ZP_00366055.1| COG1385: Uncharacterized protein conserved in bacteria
           [Streptococcus pyogenes M49 591]
 gi|209560117|ref|YP_002286589.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           NZ131]
 gi|209541318|gb|ACI61894.1| hypothetical protein Spy49_1637c [Streptococcus pyogenes NZ131]
          Length = 249

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTVT-DKDTIKHMFQVMRLTDEAEVILVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LKN      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKNLPSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|325280830|ref|YP_004253372.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter
           splanchnicus DSM 20712]
 gi|324312639|gb|ADY33192.1| Ribosomal RNA small subunit methyltransferase E [Odoribacter
           splanchnicus DSM 20712]
          Length = 234

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EY 71
            P         + D+  +   VLR+  G+ + L +GK   +   I     +    ++ + 
Sbjct: 6   TPDIEGDIYTLNADESRHCVRVLRLGAGEAVSLVDGKGTWYEGVIERAEVRGCEIRITDR 65

Query: 72  QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTY 130
           +     +   +    +P K  +R+++M++K  EMG+  I  +   +++      +R+   
Sbjct: 66  RELYGRRNFHLHLAVAPTKNIDRIEWMLEKCTEMGIDEITLLHAAHSERKVVKEERLEKV 125

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            ++A +Q     LP + P T    L+ +     + + A    G +  L++++      +V
Sbjct: 126 IVAAMKQSLKAYLPRLNPMTDFRQLVTSCREPHKFI-AHCNEGDKKRLDEVY--RPGEDV 182

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            ILIGPEG +  EE        FV P++LG   LR++TA + A 
Sbjct: 183 VILIGPEGDFSEEEVVLARHHGFV-PVTLGTSRLRTETAGIVAC 225


>gi|91790687|ref|YP_551639.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas sp. JS666]
 gi|91699912|gb|ABE46741.1| protein of unknown function DUF558 [Polaromonas sp. JS666]
          Length = 260

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 26/249 (10%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-------WLSKISYV 61
           R   D  L   +          +   VLR++ GD+I LFNG           + + I ++
Sbjct: 4   RFHADLALVPGSSVSLPDQTARH-VQVLRLQPGDHITLFNGAGEGGGIGEGEFDATIEHM 62

Query: 62  GKS-IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-- 117
           G+S +R  V   + ++ +    V          R+D++I+K+ E+G  +I+P+++  +  
Sbjct: 63  GRSDVRAMVGAYTATRRETDRAVHLALGMPANERMDWLIEKATELGAASIQPLMSERSVL 122

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
               +     +   R   ++A EQC    LP I     L   LK        V  D    
Sbjct: 123 RIKGERADKKLAHWRGVAVAACEQCGRNRLPAIREVMGLGDWLKAQAGQTAGVTQDSAEA 182

Query: 174 ---------SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
                       +     A+A+   +  L GPEGG    E+    +  FV P++LGPR+L
Sbjct: 183 VGTRLLLSLQAGTRPLAQAVANTGALTFLSGPEGGLSPAEEAAAIACGFV-PVTLGPRVL 241

Query: 225 RSDTAAVAA 233
           R++TA +A 
Sbjct: 242 RAETAPLAC 250


>gi|313205520|ref|YP_004044697.1| hypothetical protein Riean_0009 [Riemerella anatipestifer DSM
           15868]
 gi|312444836|gb|ADQ81191.1| protein of unknown function DUF558 [Riemerella anatipestifer DSM
           15868]
 gi|315023392|gb|EFT36402.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
           anatipestifer RA-YM]
 gi|325335048|gb|ADZ11322.1| Ribosomal RNA small subunit methyltransferase E [Riemerella
           anatipestifer RA-GD]
          Length = 231

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRS 75
            +  +     D+ H+++ VLRMKEG+ + + +GK       +   GK +   + E Q+++
Sbjct: 8   ILNDKVIIDSDEQHHISKVLRMKEGEMLYVTDGKGNVAKGNLILEGKKVELNILEIQTKT 67

Query: 76  QTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
                 +    +P K  +R ++ ++K+ EMG+  I  ++T  ++  H N+D+++   I+A
Sbjct: 68  PPFSPYLHIAIAPTKNIDRTEFFVEKATEMGISEISFLLTEKSERKHLNIDKIQKKIIAA 127

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           ++Q      P +         ++        V   +      SL ++  +     V  LI
Sbjct: 128 SKQSLRYHFPKVNDLQKFTSFMQTQTAENTFVAHCDKAFKRVSLSEIPLV---DKVCFLI 184

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           GPEG +   E E L     V  +SLG + LR++TA V  +A    
Sbjct: 185 GPEGDFSLSEIELLLEKG-VQAISLGNQRLRTETAGVF-VAAWNY 227


>gi|313884114|ref|ZP_07817880.1| RNA methyltransferase, RsmE family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620561|gb|EFR31984.1| RNA methyltransferase, RsmE family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 263

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 20/254 (7%)

Query: 7   LKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +++ FVD   L +       GD +H+L  V+R K G  I +       + + I  + K +
Sbjct: 1   MQQYFVDQATLTLGQVFTIEGDDFHHLVKVMRAKPGQVIQVVAANQVAYAASIQTIDKAT 60

Query: 65  IRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITR 115
            + +V+   +         DV       K ++LD++ QK  E GM  ++P      V   
Sbjct: 61  CQLQVDQILQDNCLIELPLDVTLACGISKNDKLDWIAQKGTEGGMACLQPLNLKRDVAKW 120

Query: 116 YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   ++R+      AA+Q     +P +     L   ++   +    + A E     
Sbjct: 121 QANKAAKRIERLEKIVKEAAQQSHRRQIPQVNDCLNLIDFIRQVPNQAIKLIAFEETAKV 180

Query: 176 NSLEKLHAIAH--------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
              + L             +P + ++ G EGG    E E L +  F    SLGPRILR++
Sbjct: 181 GHHQVLAKTLSQLDLNQEVLPPLVMVFGSEGGLDIGEVEQLQAAGF-KACSLGPRILRAE 239

Query: 228 TAAVAAMALVQAIC 241
           TA + A+  +    
Sbjct: 240 TAPIFALGAISYAL 253


>gi|167627639|ref|YP_001678139.1| 16S ribosomal RNA methyltransferase RsmE [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597640|gb|ABZ87638.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 241

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 15/240 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVG-KSIRF 67
            F D      T+   +G+ Y+Y  +VLR+K+ D I LFN  DG  + ++I  +  K+I  
Sbjct: 7   FFADIS-TQTTKLSITGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKAQIIDINNKNILL 65

Query: 68  KVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
           +V  +     +    V    + IK    +++IQK+ E+G+  I P+IT YT         
Sbjct: 66  EVIEKKEIHNENKYIVNIYQAIIKNENFEFIIQKATELGVNNIYPIITEYTNHKFDKKGF 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R     I+AAEQC  + +P I+ P  +   +   D    I     +   EN    
Sbjct: 126 DKKLERWNKIAIAAAEQCGRVFIPKIHNPIEINS-IHLSDSYMNIALCPYSNTPENFENL 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +          I IGPEGG+ ++E E   +  F T ++LG RIL+++TA V+ +A++  +
Sbjct: 185 IKTHDKFN---IFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPVSILAIINFV 240


>gi|157828086|ref|YP_001494328.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia rickettsii
           str. 'Sheila Smith']
 gi|157800567|gb|ABV75820.1| hypothetical protein A1G_01190 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 244

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 12/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFNG DGE+L++I+
Sbjct: 1   MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56

Query: 60  YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            +GK   S+R K   Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+
Sbjct: 57  DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q    N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ ++    ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 173 SILRISSLLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|260911769|ref|ZP_05918341.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634095|gb|EEX52213.1| RsmE family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 240

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 8/236 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-- 67
            +V    C     +   ++  + + VLR++ GD + L +G    + ++++ V KS     
Sbjct: 7   FYVPNAECSN---ELPAEEAAHASRVLRLESGDEVFLIDGAGCFFKAQLTLVTKSRCLYD 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            VE   + +T    +    +P K  +R+++ ++K+ E+G+     +   +++  +  ++R
Sbjct: 64  IVERLPQEKTWHGRIAIAMAPTKVIDRVEWTLEKATEIGVDEFSLLNCAFSERRNVKLER 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185
           +    ++A +Q      P +    + E  +K      + I         ++   +L  + 
Sbjct: 124 LDKIVVAAVKQSRKAWKPLLNDIQSFEHFVKQPRKGVKYIAHCYAEIDKKDLYNELTQLN 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               V ILIGPEG +  EE     S  +V+ +SLG   LR++TAA+AA  + Q   
Sbjct: 184 CDEEVTILIGPEGDFSIEEVRLAMSQGYVS-VSLGQSRLRTETAALAATMIAQLAF 238


>gi|39995554|ref|NP_951505.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter sulfurreducens
           PCA]
 gi|39982317|gb|AAR33778.1| conserved hypothetical protein TIGR00046 [Geobacter sulfurreducens
           PCA]
 gi|298504560|gb|ADI83283.1| 16S rRNA (3-methyl-U1498)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 260

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R  V             GD + ++A  LR+K    ++L +GK+ E    I+ +G+   
Sbjct: 1   MRRFIVTGLDLSGKNVVVRGDLFRHMARSLRLKIDTEVILADGKEAECTGVITAMGRDSL 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +      Q R       +       K ++++ ++QKS E+G+  + P +   +      
Sbjct: 61  TVTISERRQIRGDGDGLWLTLCQGLPKGDKMELILQKSTELGVSEVVPFLAERSVPRISP 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + R +     AA Q     +P +     L   ++  DH+ +++   E   +   
Sbjct: 121 EREQERLRRWQRVAEEAARQAGCPAVPRVQLARGLTEAVRGTDHDLKLLLW-EDERTTTL 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L A      +A+++GPEGG+ + E        FV P++LG RILR++TA +A +A++
Sbjct: 180 AGVLAAAQTPKRIAVVVGPEGGFTAAEAAEAREAGFV-PVTLGRRILRTETAGIALVAIL 238

Query: 238 QAICGD 243
           Q + GD
Sbjct: 239 QYLYGD 244


>gi|317495255|ref|ZP_07953625.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914677|gb|EFV36153.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 249

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+    I +    S D  +++  ++R K  D I +    + +++  I  +  +I 
Sbjct: 1   MQQYFVNDKFDINSTYNLSKDDSNHIVRIMRKKINDKIYVVFNDEIKYICSI--INDNIE 58

Query: 67  FKV----EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
             +    E    S      +     P+K ++ +Y+IQK  E+G+ +I    +        
Sbjct: 59  SVIVKPYEEVRGSNELPIKITIAIPPLKNDKTEYLIQKLTELGVSSIVLFNSERNIAKIK 118

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175
                  ++R +     AAEQ     +P I      E L++     + ++V  ++   +E
Sbjct: 119 KDKVESKLNRWQKIIKEAAEQSKRNLIPDITYIDCFEKLIEYSKSLDYKMVAYEKESINE 178

Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              N  + L+      +V  + G EGG   +E  TL S  F   +SLG RILR++TA + 
Sbjct: 179 DNYNLKKLLNGPLENKSVIAVFGSEGGLSEKEINTLTSSEF-DVISLGKRILRAETAPLY 237

Query: 233 AMALVQA 239
             + V  
Sbjct: 238 FTSCVSY 244


>gi|254369089|ref|ZP_04985101.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122039|gb|EDO66179.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 242

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 123/240 (51%), Gaps = 15/240 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRF 67
            F D  L   T    SG+ Y+Y  +VLR+K+ D I LFN  D  ++ +KI  +  K+I  
Sbjct: 7   FFSDI-LTKTTIFNISGEYYNYFKNVLRLKKSDLIELFNNTDSLQYKTKIITIDNKNITL 65

Query: 68  KVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120
           +V  +     + + +     + IK+   + +IQK+ ++G+  I P+IT +T +       
Sbjct: 66  EVIDKKHISNENNYITNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNGF 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++K
Sbjct: 126 DKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQK 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           + +  +     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  +
Sbjct: 185 VKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINFL 240


>gi|194335493|ref|YP_002017287.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307970|gb|ACF42670.1| protein of unknown function DUF558 [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 247

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 15/229 (6%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79
                GD++H+L  VLR K G+ IL+ +G      + I+ +GK S    +   SR     
Sbjct: 17  NLVVDGDEFHHLVRVLRKKTGEKILVTDGNGLRCEASIAEIGKTSFTADILACSRIDRPN 76

Query: 80  SDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
           ++V    S +K   R +  ++K+ E+G+  I P++T  T      +     ++R RT  +
Sbjct: 77  TEVTVALSLLKAPQRFELFLEKATELGVSTIIPMLTARTLSHPSNEKVQGKLNRWRTIML 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           SAA Q     LP +  P T +       ++ +++  + +                  +  
Sbjct: 137 SAARQSKRHYLPQLTEPLTFKKAAALQGYDLKLIPYELSEAPPKVK------CSGKKILF 190

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           LIG EGG+ + E E   +  F   LS G  ILR++TA + A+ALV+   
Sbjct: 191 LIGGEGGFTANEIEEARAAGFNE-LSFGKTILRAETAGIFAVALVRTQL 238


>gi|313896749|ref|ZP_07830297.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974666|gb|EFR40133.1| RNA methyltransferase, RsmE family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 248

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGKSI 65
           ++RLF    L    + + +G   H+LA V+R + G  + +  G         ++ V +  
Sbjct: 1   MRRLFYPGELTP--EIRITGGDAHHLARVMRAQLG-AVHVVAGTDGRAARMTVTAVARDA 57

Query: 66  RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--- 120
                  Y       +++V  + + +K  + D+++QK+VE+G  A+ P++T +       
Sbjct: 58  VTLRLDSYVEDDAPARAEVILVQALLKGEKTDFVVQKAVELGAAALHPIVTEHVVVRYDA 117

Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCG 173
                   R +     AA+QC  L L  + P  +++ +L + +     +  ++F  E   
Sbjct: 118 KKAAAKTARWQKIADEAAKQCGRLLLMHVAPVGSIDSILGDAEIFGGVDTTVIFCYEGER 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            ++    L  +     V +++G EGG+   E   L +     P+SLG  ILR++TAA+AA
Sbjct: 178 MQSMRAVLRTVTSA-RVVLIVGAEGGFSPAEAARLTAAG-AQPVSLGHLILRAETAAIAA 235

Query: 234 MALVQAICG 242
           + +VQ   G
Sbjct: 236 LTVVQYELG 244


>gi|218282362|ref|ZP_03488644.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989]
 gi|218216648|gb|EEC90186.1| hypothetical protein EUBIFOR_01226 [Eubacterium biforme DSM 3989]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +K++++D  L I    +    Q H++  VLR    + I +     G +L  +        
Sbjct: 1   MKQVYLDAVLSIHDVIELDTKQAHHIFDVLRTTPKEKIRIITKNSGVFLGHVE---NKPI 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
             ++       +   +    + IK ++ ++M+QK+ E+G+  I P +++ T      +  
Sbjct: 58  LIIDSIVDVFEENQSITLCCALIKQDKFEWMLQKACELGVTKIVPFVSKNTVVKLDEKKA 117

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD-ETCGSENSLE 179
                R     ++A +QC+  TL  + P   L+  L N+   C +V  + E+  S++   
Sbjct: 118 EKKQSRWNEILLAATKQCNRNTLVELEPVIPLKK-LSNYKSECNLVAYEKESDPSKHMAH 176

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L    +  ++ + IGPEGG+   E + L+   +    SLG  ILR++TAA   ++ ++ 
Sbjct: 177 YLKE--NPKSITVCIGPEGGFEESEIQVLNEFGYEN-CSLGNNILRAETAACYVLSAIEY 233


>gi|148657147|ref|YP_001277352.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus sp. RS-1]
 gi|148569257|gb|ABQ91402.1| protein of unknown function DUF558 [Roseiflexus sp. RS-1]
          Length = 260

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 11/249 (4%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           I S+  R FVD       + +    +  H LA VLR+  GD I+L +G+  ++   +  V
Sbjct: 9   IRSNTYRFFVDPSALDGGKARLFDPELGHQLADVLRLGRGDRIILLDGEGWQYTVSLEAV 68

Query: 62  GKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
            +        ++R       + ++      I+T R ++ +QK VE+G     P     + 
Sbjct: 69  DRRGTVNGAIEAREAAGGEPRINLTIYLPLIRTERFEWALQKGVELGAATFVPTTCARSI 128

Query: 119 N---THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE---TC 172
           +       + R R     AAEQ     LP + P          WD +   +   E     
Sbjct: 129 DIAPDERKLTRWRRIIREAAEQSRRGRLPRLTPAIPFAEACAQWDSSDPALLLWEGTDAT 188

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              ++L  L       ++A+  GPEGG   +E++       +  +SLGPR LR++TA +A
Sbjct: 189 PLAHALRILQQHTSPTSLALFSGPEGGLTDDERQCAGRHG-IMSVSLGPRTLRAETAPIA 247

Query: 233 AMALVQAIC 241
           A A++    
Sbjct: 248 ATAIIVYEF 256


>gi|301794754|emb|CBW37207.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
          Length = 247

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 97/244 (39%), Gaps = 12/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  +     
Sbjct: 1   MQQYFVKGSAVSPVTIE-DRETSKHMFQVMRLKEEDEVTLVFDDGIKRLARVLDMENRQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVQELNDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF----ADETCGSEN 176
              ++++    + AAEQ     +P I+        L   D   +I+     A +   +  
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNVVPSIHLFENKADFLAQLDQFDRILVAYEEAAKEGEAAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +  +     +  + GPEGG    E E   +   V    LGPRILR++TA + A++ 
Sbjct: 180 LIKAVTGLEKGAKLLFIFGPEGGLSPAEIENFEAKGAVLA-GLGPRILRAETAPLYALSA 238

Query: 237 VQAI 240
           +  +
Sbjct: 239 LSVL 242


>gi|307153004|ref|YP_003888388.1| hypothetical protein Cyan7822_3159 [Cyanothece sp. PCC 7822]
 gi|306983232|gb|ADN15113.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7822]
          Length = 239

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 8/236 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + RL ++     +     + DQ HYL  VLR+K+GD +++ NG+   W + +      + 
Sbjct: 1   MYRLVIEPTQQQQEWVNLTHDQQHYLKRVLRLKDGDPLIIMNGQGKAWKAILQGTSAQL- 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124
             +E  + S     ++  + +  K +  + +++   E+G+    PVI+  T    +   +
Sbjct: 60  --LETLTESTELALNLSLLIALPKGSGFEEIVRGCTELGVTTFIPVISERTLLNPSAQKI 117

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHA 183
           +R R   + AAEQ +   +P I  P      L                  +++    L  
Sbjct: 118 ERWRKIALEAAEQSERQIVPQILEPIKFSIALTKVKEVKTDKYICVTRRETDHLFSYLTK 177

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               P + I  GPEGG+ + E +   S  F  P+SLGPRILR+ TA V   +LV A
Sbjct: 178 PLLNPQI-IATGPEGGWTTGEIDLAISAGF-QPVSLGPRILRAITAPVYVASLVSA 231


>gi|30022390|ref|NP_834021.1| surface protein [Bacillus cereus ATCC 14579]
 gi|29897948|gb|AAP11222.1| surface protein [Bacillus cereus ATCC 14579]
          Length = 245

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     +T  +  GD  H++A V+RM  GD+I          +  I  +     
Sbjct: 1   MQRYFVEEKYVNETSIRIVGDDVHHIARVMRMSAGDHIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLSMSGEYDTCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
            N  + L  +     + I+ GPEGG   EE   L    FV P SLGP
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKFV-PCSLGP 225


>gi|167769487|ref|ZP_02441540.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM
           17241]
 gi|167668455|gb|EDS12585.1| hypothetical protein ANACOL_00821 [Anaerotruncus colihominis DSM
           17241]
          Length = 241

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 13/233 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F             +G+   ++A  LRMK G+ + + +G   ++  +I  +     
Sbjct: 1   MPRFFCGQ--VCGDTAVVTGEDARHMALSLRMKIGEAVTVCDGAGRDYQCRIETIAPEQV 58

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
                QS       + ++    +  K ++ + ++QK+VE+G   I PV+T    +     
Sbjct: 59  LLRVGQSAVSAGEPRVEITLYQAMPKGDKFESIVQKAVELGAARIVPVLTHRCVSRPDEK 118

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R     + AA+QC    +P + P       ++        +   E    +  L
Sbjct: 119 AMRKKLERYNRIALEAAKQCGRGRIPQVEPMLHFSQAVERMKCEPLAILFYENA--DQPL 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            +         +++++G EGG+   E         +  LSLG RILR +TA V
Sbjct: 177 HQALRSGVGGRISLMVGSEGGFEPSEAGFAVENG-LMALSLGSRILRCETAPV 228


>gi|320529958|ref|ZP_08031034.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399]
 gi|320137755|gb|EFW29661.1| RNA methyltransferase, RsmE family [Selenomonas artemidis F0399]
          Length = 248

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGKSI 65
           ++RLF    L    + + +G   H+LA V+R + GD + +  G         ++ V +  
Sbjct: 1   MRRLFYPGELTP--EIRITGGDAHHLARVMRAQLGD-VHVVAGADGRAARMTVTAVARDA 57

Query: 66  RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--- 120
                  Y       +++V  + + +K  + D+++QK+VE+G  A+ P++T +       
Sbjct: 58  VTLRLDSYVEDDAPARAEVILVQALLKGEKTDFIVQKAVELGAAALHPIVTEHVVVRYDA 117

Query: 121 ---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCG 173
                   R +     AA+QC  L+L  + P   ++ +L + +     +  ++F  E   
Sbjct: 118 KKAAAKTARWQKIADEAAKQCGRLSLMHVAPVGAIDSILGDVEIFGGVDTTVIFCYEGER 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            ++    L  +     V +++G EGG+   E   L +     P+SLG  ILR++TAA+AA
Sbjct: 178 MQSMRAVLRTVMSA-RVVLIVGAEGGFSPTEAARLTAAG-AQPVSLGHLILRAETAAIAA 235

Query: 234 MALVQAICG 242
           + +VQ   G
Sbjct: 236 LTVVQYELG 244


>gi|226938941|ref|YP_002794012.1| hypothetical protein LHK_00007 [Laribacter hongkongensis HLHK9]
 gi|226713865|gb|ACO73003.1| Methyltrans_RNA domain containing protein [Laribacter hongkongensis
           HLHK9]
          Length = 240

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           + R  VD  PL    +     D   +L  VLR++  D ++LF+GK GEW +++  +G+ S
Sbjct: 1   MPRFLVDSLPLATG-ELSLPDDVVRHL-QVLRLRTDDPLILFDGKGGEWRARLVELGRRS 58

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------T 117
            R  VE  Q+  +     +         +R+++ +QK VE+G+   +P++T         
Sbjct: 59  ARVHVEAFQAVERESPLLLSLAQGVSTGDRMEFTLQKGVELGIAVFQPLVTERAMLKLAG 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +      +R      +A EQC    +P I P  TL   L     +               
Sbjct: 119 ERAERKHERWNDIVRAACEQCGRNRIPEIRPLMTLAAFLAQPRADAARFILSPAGE---- 174

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +L          +L GPEGG  S+E+    +  +  PL LGPR+LR++TAA+AA A +
Sbjct: 175 -RRLADYPAPQAAWLLAGPEGGLSSQEEAAAMAAGW-EPLRLGPRVLRTETAALAAAAAM 232

Query: 238 QAICGDW 244
           Q + GD+
Sbjct: 233 QTLWGDF 239


>gi|239818235|ref|YP_002947145.1| 16S ribosomal RNA methyltransferase RsmE [Variovorax paradoxus
           S110]
 gi|239804812|gb|ACS21879.1| protein of unknown function DUF558 [Variovorax paradoxus S110]
          Length = 244

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 16/230 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R     PL      +       +   VLRM+ GD + LF+G  GE+ + +  +G+S  
Sbjct: 1   MPRFHCPVPLTAGASLELPPGPARH-VQVLRMQPGDALTLFDGSGGEYAATVERMGRSDV 59

Query: 67  FKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
                      ++    V          R+D++++K+ E+G+ +I+P+ T +       +
Sbjct: 60  SVAIGAHAPAEREAVRSVHLAVGMPANERMDWLVEKATELGVASIQPLATAHGVLRLSGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL---EFLLKNW--DHNCQIVFADETCG 173
                        I+A EQC    +P I+P          +     +   ++V +    G
Sbjct: 120 RAEKKRAHWEAIAIAACEQCGRNRVPRIHPVRPFSGPSAWIGAHAGEAPLRLVLSL-AEG 178

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
                +   +     +V +L GPEGG  S E++   +  F  P++LGPR+
Sbjct: 179 MRRLADATASAPADRSVLVLSGPEGGLSSAEEQKALACGFA-PVTLGPRV 227


>gi|168008547|ref|XP_001756968.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691839|gb|EDQ78199.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 353

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 8/237 (3%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R  +   P       +  GD++ ++  VLR+   D I LF+G  G     +  V K+ 
Sbjct: 105 LPRFHISSLPAVKGMTVRVDGDEFWHMTRVLRLNVNDRIELFDGNGGLVEGTLLKVTKNC 164

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP----IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120
              V   +R     +   +  +     +K  R D++++K  E+G   + P++T+ + +  
Sbjct: 165 AEVVATTARRVLPLTGPNWHVAAAFGNLKGGRADWLVEKCTELGAQTLTPLLTQRSASVA 224

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               DR    +++A +QC  L    +  PT L+ LL        + F         +   
Sbjct: 225 EQRNDRWNRISMAATKQCQRLHALDVREPTQLKHLLAEVKKAD-VAFLAAAGAPPLAQSL 283

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     +    +LIGPEG +  EE E L       P+ LG   LR +TAA+A +  V
Sbjct: 284 LQRPECLRGGLLLIGPEGDFTPEEIELLIDAG-AMPVGLGQLRLRVETAAIAILTTV 339


>gi|91205956|ref|YP_538311.1| hypothetical protein RBE_1141 [Rickettsia bellii RML369-C]
 gi|157826683|ref|YP_001495747.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia bellii OSU
           85-389]
 gi|91069500|gb|ABE05222.1| unknown [Rickettsia bellii RML369-C]
 gi|157801987|gb|ABV78710.1| hypothetical protein A1I_01600 [Rickettsia bellii OSU 85-389]
          Length = 234

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L    + +   D  HY+  VLR+K  D   +FNG DGE+L++I+ 
Sbjct: 1   MKFN----RIYINNHLAENIKLELGSDHTHYIKTVLRLKVNDQFRIFNGTDGEFLAQITK 56

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + + ++   ++   R    +S +    S IK ++L   I  + ++G+  I  +IT   Q 
Sbjct: 57  LDRNNLIITIQECLRKPRAESSLTLAMSIIKQDKLMLAINMATQLGVTKIVTLITERCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + L  P I P  +++  LK   +N  +++A+E    ENS+ 
Sbjct: 117 RSVNIERLTKCVIEATEQSERLNPPVIEPAISIQNYLK--KNNNFVLYANEHEKEENSIL 174

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           KL+    I N++I+IGPEGG+ ++E   L S      +SLG  ILR
Sbjct: 175 KLN--KDITNISIVIGPEGGFTNDEIALLASYKNAYSISLGKNILR 218


>gi|21911245|ref|NP_665513.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS315]
 gi|28896621|ref|NP_802971.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           SSI-1]
 gi|21905458|gb|AAM80316.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811875|dbj|BAC64804.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 249

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGVKYLAKVTSSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LKN      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKNLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|291559325|emb|CBL38125.1| RNA methyltransferase, RsmE family [butyrate-producing bacterium
           SSC/2]
          Length = 245

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 26/249 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65
           + R F+          +  G   +++ +VLRMK GD + L NG D E+   +      +I
Sbjct: 1   MYRFFIKEEQIHDGMIEICGSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTI 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             K+E     +T+    +       K ++++ ++QK+VE+G+  I PV  +         
Sbjct: 61  LAKIEDVHGMETELPVKITLYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177
                + R  T  +SAA+Q     +P +      + +L+   D    +V  +E  G + S
Sbjct: 121 KAAKKVSRWNTIALSAAKQAKRGIIPEVREMKNFKDILEEVQDIEFMLVPYEEAKGMQAS 180

Query: 178 LEKLHAIAHIPNVAILIGPEGG--------YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            E +       ++                 +  EE E L +    T +SLG RILR++TA
Sbjct: 181 KELISQAKGKKSIG--------IIIGPEGGFEKEEIEQLKAAGGQT-MSLGKRILRTETA 231

Query: 230 AVAAMALVQ 238
            +  ++++ 
Sbjct: 232 GMTVLSILM 240


>gi|146319760|ref|YP_001199472.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis
           05ZYH33]
 gi|146321960|ref|YP_001201671.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis
           98HAH33]
 gi|145690566|gb|ABP91072.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
           05ZYH33]
 gi|145692766|gb|ABP93271.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
           98HAH33]
 gi|292559369|gb|ADE32370.1| hypothetical protein SSGZ1_1914 [Streptococcus suis GZ1]
          Length = 252

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 11/249 (4%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           + + +++ FV+          +  D   ++  V+R++ GD I+L      + L+++    
Sbjct: 1   MEARMQQYFVNGRAPQGMFQISDKDTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQ 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRY 116
                 +E  + +      V       K ++L+++ QK+ E+GM A+        V+   
Sbjct: 61  SQSVEIIEELTDNVELPISVTIAMGFPKGDKLEFVAQKATELGMSALWAFPADWSVVKWD 120

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE- 175
            +      +++      AAEQ     +P +         L       QI+ A E    E 
Sbjct: 121 GKKLAKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEG 180

Query: 176 ---NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              N ++ L  +    +V +++GPEGG   EE         V    LGPRILR++TA + 
Sbjct: 181 EQANLVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLY 239

Query: 233 AMALVQAIC 241
           A++ +    
Sbjct: 240 ALSTISYAT 248


>gi|259503162|ref|ZP_05746064.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168877|gb|EEW53372.1| RsmE family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 250

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 13/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV              +  H+L  VLR + G  + L       +L+++        
Sbjct: 1   MQRYFVAAK-PGTAPITLPPEIAHHLTTVLRAQRGTQVELVLADHQAYLAEVVATQPVTT 59

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            K+  +    ++    V  +    K   + ++++QK+ E+G   I       +       
Sbjct: 60  VKLLQKLAGNSELPVQVTLLCGLPKTKEKPEWIVQKATELGATTIAFFEAERSVSHWAAN 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS- 177
                + R++     AAEQ      P +     L   L       ++V  +E+     + 
Sbjct: 120 KRERKLARLQKIADGAAEQSHRNYQPQVTYYPGLHQALVANPAPVRLVAWEESAKQGETS 179

Query: 178 --LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              ++L  +     +  + GPEGG  + E E + +   VT + LGPRILR++TA +  +A
Sbjct: 180 ALAQQLAKLTAGGRLVAIFGPEGGLTTGEVEQMQAAG-VTAVGLGPRILRTETAPLYFLA 238

Query: 236 LVQAIC 241
            V   C
Sbjct: 239 AVSYAC 244


>gi|172039252|ref|YP_001805753.1| hypothetical protein cce_4339 [Cyanothece sp. ATCC 51142]
 gi|171700706|gb|ACB53687.1| DUF558-containing protein [Cyanothece sp. ATCC 51142]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 6/231 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R+ ++           + +Q HYL +VLR+KE    ++ +G+   +L K++     I   
Sbjct: 4   RIIIELTQKQGNIITLTPEQKHYLKNVLRLKENSEFIVLDGQYNTYLVKLNNDNGQI--- 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           ++          +V  + +  K    D +I+   E+G+  I P+I++ T  + + + +DR
Sbjct: 61  IKPLKEETELPINVTLMIALPKGKGFDEVIRSCTELGVNTIIPIISQRTLLKPSSHKLDR 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     A EQ +   +P I  P +    LKN     Q  +   T      L        
Sbjct: 121 WRKIVKEATEQSERQRVPTILEPISFSEALKNTKQPNQNCYICVTRKHAKHLLTYLLPEI 180

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             ++ I  G EGG+  +E     +L F+  ++LG R+LR+ TA + A++LV
Sbjct: 181 TNSITIATGCEGGWTEKEINEAINLGFI-AVNLGSRVLRAVTAPLVALSLV 230


>gi|169824474|ref|YP_001692085.1| hypothetical protein FMG_0777 [Finegoldia magna ATCC 29328]
 gi|167831279|dbj|BAG08195.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F +    I  +    G+ Y+++ + LR+ +G  I    G D  ++++I  +    I
Sbjct: 1   MYRTFRNQEDKIDDKILIKGEDYNHIKNSLRLSKGSLIHQVIG-DTIFVTEIEEITSNEI 59

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+  +   Q     ++      +K+++ +Y+IQK+ E+G+  I  V T  T     + 
Sbjct: 60  ICKIIDEDSIQYESPLNITLYQCILKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDK 119

Query: 125 D------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R     + +++Q     +P I     +   +KN  +   +VF +     + S 
Sbjct: 120 KWNKKKDRFEKIALESSKQSKRTVIPEIEGLIKINE-IKNTSNCLNLVFYENE---KESF 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +   + +   ++ I IGPEGG   +  + L S  F   +SLG RILR+DTA + A++++Q
Sbjct: 176 KSFLSNSKNKDINIFIGPEGGLSEDNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQ 234

Query: 239 AICGD 243
              GD
Sbjct: 235 YELGD 239


>gi|255534646|ref|YP_003095017.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340842|gb|ACU06955.1| Ribosomal RNA small subunit methyltransferase E [Flavobacteriaceae
           bacterium 3519-10]
          Length = 257

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQ 79
           + K + ++  ++  VLRM++G+ I + +GK      K+   GK +   V E         
Sbjct: 37  EVKINEEEQQHILKVLRMRDGEEISVTDGKGNLATGKLITEGKKVSLNVSETHQNLPNFS 96

Query: 80  SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138
           + +    +P K  +R+++ ++K+ EM +  +  + T  T+  + N+D++R  ++SA++Q 
Sbjct: 97  TQLHIAIAPTKNIDRIEFFLEKATEMAVSEVTILQTEKTERKNLNIDKLRKQSVSASKQS 156

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
                P +   T     +KN D     V          +L+ +    H      LIGPEG
Sbjct: 157 LRYHFPKVNDITKFSDFIKNLDPETTFVAHCNESLERFNLKDIQPQKHT---TFLIGPEG 213

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +  +E   L     +  +SLG + LR++TA +  +A    
Sbjct: 214 DFSEKEINMLADKG-IKAVSLGNQRLRTETAGIF-VAAWNY 252


>gi|298490147|ref|YP_003720324.1| hypothetical protein Aazo_0765 ['Nostoc azollae' 0708]
 gi|298232065|gb|ADI63201.1| protein of unknown function DUF558 ['Nostoc azollae' 0708]
          Length = 235

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 114/242 (47%), Gaps = 13/242 (5%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            S L+R+ ++     ++Q   +  Q HYL  VLR ++GD  +  +G    WL+++  +G+
Sbjct: 1   MSQLQRITINPSQLQESQLLLTPQQQHYLLRVLRSRDGDKFIAMDGISKWWLAQL--IGE 58

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
             +  +E    +      +  + +  K N  D +++ S E+G+  I P+++  T  + + 
Sbjct: 59  QGQI-LEPLEVTTELPVSITLMVALPKGNGCDDIVRCSTELGVTCILPILSDRTLLKPSP 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R R   + AAEQ +   +P I  P      +               C +  +   L
Sbjct: 118 QKLERWRRIALEAAEQSERAFVPTILEPVAFRTAINECAS-----IHRYICEARGNYPHL 172

Query: 182 HAIAHI--PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
             +++     + I IGPEGG+  +E E      F  P+SLG RILR+ TA + A++L+ A
Sbjct: 173 TTVSNKFSSEIIIAIGPEGGWTDQELEIALESGF-QPISLGRRILRAVTAPIVALSLIAA 231

Query: 240 IC 241
            C
Sbjct: 232 AC 233


>gi|269958740|ref|YP_003328527.1| putative methyltransferase [Anaplasma centrale str. Israel]
 gi|269848569|gb|ACZ49213.1| putative methyltransferase [Anaplasma centrale str. Israel]
          Length = 243

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 7/229 (3%)

Query: 9   RLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RL+ +   +    +   +  Q  Y+  V+R +  D +LLF+G  GEWL +IS + K  + 
Sbjct: 11  RLYHEGDEIRTGARVTLNSSQARYVRDVMRARHDDAVLLFDGIRGEWLCRISCISKKTVE 70

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            + E  SR   +   +   F+ +K++ +  +++++ EMG+   +P+ T Y+     +  +
Sbjct: 71  VEAETLSRKHVRTRTLVLCFALVKSDTVRNVVRQATEMGVTLFQPIRTEYSSVHDVDSKK 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
              + + A+EQC    +P + P      L +  +   Q V  DET G     E LH    
Sbjct: 131 CHLWAVEASEQCGRQDVPEVAPVVDFRTLCEFHNPERQFVLCDETGGGRPPYEVLHG--- 187

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             +V +++GPEGG+  EE     S  F   +SLGPRILR DTA V A+A
Sbjct: 188 GRDVWVVVGPEGGFSDEELRL--SENFCDKMSLGPRILRVDTAVVCALA 234


>gi|58579175|ref|YP_197387.1| hypothetical protein ERWE_CDS_05110 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417801|emb|CAI27005.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 239

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 6/231 (2%)

Query: 9   RLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           RL+V        +  K      HY++ V+R  + D + +FNGKDGEW+ +I  +   I+ 
Sbjct: 9   RLYVPEIQLPNPSIIKLDTLASHYISKVMRATKCDYVKIFNGKDGEWIGEICELSNHIKI 68

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           +++  +R Q K  ++   F  +K   L  +I+++ EMG+  ++P+ T++   ++ N+D+ 
Sbjct: 69  RIDKLTRKQVKSKNLTLCFGIVKGTILPNIIRQATEMGVTLLQPIYTKHIATSNINLDKC 128

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R + I A+EQC+ L +P I  P +   L K    N   +  DET   +   E L    + 
Sbjct: 129 RKWAIEASEQCERLDIPQISHPISFTDLKKLDTANINFIICDETGNGKKPAEILT---NK 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            N+ I++GPEGG+ SEE +      F   LSLG RILR DTA V+A+A V 
Sbjct: 186 NNIYIIVGPEGGFSSEELDFA--YTFCNGLSLGTRILRVDTAVVSALAYVN 234


>gi|255282406|ref|ZP_05346961.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM
           14469]
 gi|255266990|gb|EET60195.1| RNA methyltransferase, RsmE family [Bryantella formatexigens DSM
           14469]
          Length = 246

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 31/255 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGK-S 64
           +   F +           +G   +++ +VLRM+ G    L +G+    +  +I+ V K  
Sbjct: 1   MHHFFAEPAQITGDVVCLTGSDVNHIRNVLRMEAGARFTLSDGQSSRLYTCRITSVEKEK 60

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   +E  S   T+  S +       K++++D+++QK+VE+G+  I PV+T+ T      
Sbjct: 61  IWAAIESVSEEGTELPSRIWLFQGLPKSDKMDWIVQKAVELGVYGIVPVMTKRTVVRLDA 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSEN 176
           +       R       AA+Q   + +P +  P +    L+   D   +++  +   G E 
Sbjct: 121 KKEKARCARWNAIAEGAAKQSGRMLVPQVKEPVSFAQALQMAQDMQIRLIPYELAGGMEK 180

Query: 177 SLEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +      IA   +VA+ I                            FV  ++LG RILR+
Sbjct: 181 TRRIFSQIAPGQSVAVFIGPEGGFEEEE----------VCRAEEAGFVR-VTLGKRILRT 229

Query: 227 DTAAVAAMALVQAIC 241
           +TA ++A+A++  + 
Sbjct: 230 ETAGLSALAMLGYVL 244


>gi|302380721|ref|ZP_07269186.1| RNA methyltransferase, RsmE family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311664|gb|EFK93680.1| RNA methyltransferase, RsmE family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 241

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 113/245 (46%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F +    I  +    G+ Y+++ + LR+ +G  I    G D  ++++I  +    I
Sbjct: 1   MYRTFRNQEDKIDDKILIKGEDYNHIKNSLRLSKGSLIHQVIG-DTIFVTEIEEITSNEI 59

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+  +   Q     ++      +K+++ +Y+IQK+ E+G+  I  V T  T     + 
Sbjct: 60  ICKIIDEDSIQYESPLNITLYQCILKSDKNEYIIQKATELGVNKIVFVETERTVVKLDDK 119

Query: 125 D------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R     + +++Q     +P I     +   +KN  +   +VF +     + S 
Sbjct: 120 KWNKKKDRFEKIALESSKQSKRTVIPEIEGLIKINE-IKNTSNCLNLVFYENE---KESF 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +   + +   ++ I IGPEGG   +  + L S  F   +SLG RILR+DTA + A++++Q
Sbjct: 176 KSFLSNSKKKDINIFIGPEGGLSEDNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQ 234

Query: 239 AICGD 243
              GD
Sbjct: 235 YELGD 239


>gi|114777358|ref|ZP_01452355.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1]
 gi|114552140|gb|EAU54642.1| hypothetical protein SPV1_13699 [Mariprofundus ferrooxydans PV-1]
          Length = 240

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 14/240 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL ++ PL   T      +  HYL  V+R   GD ++LFNG  GE+ + I  + +     
Sbjct: 4   RLHLNQPLEAGTTVDLPANLAHYLHTVMRHAVGDTVILFNGHGGEYHAVIDSLSRKAASC 63

Query: 69  VEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +  ++    V  +    ++ +++ ++QK  E+G        +  +         
Sbjct: 64  RITAFENIDREMACRVHIVQGACRSEKIETVLQKGTELGAAGFHITRSERSSLKLDGSKL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR R     AAEQC    +P ++  T L  +     H   +     T  S   +  
Sbjct: 124 DARLDRWRKIVTEAAEQCGRTIVPTVHWHTRLSDI---PCHGLGLTLHPHTAASWQQIRT 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              I     + + +GPEGG+   +  TL    F   ++ GPRILR++TAA A +A +QA+
Sbjct: 181 --EIRESSEITLAVGPEGGWSDADIATLGERGF-RSIAFGPRILRTETAAPALLAAIQAV 237


>gi|167767378|ref|ZP_02439431.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1]
 gi|167711353|gb|EDS21932.1| hypothetical protein CLOSS21_01897 [Clostridium sp. SS2/1]
          Length = 245

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 26/249 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65
           + R F+          +  G   +++ +VLRMK GD + L NG D E+   +      +I
Sbjct: 1   MYRFFIKEEQIHDGMIEICGSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTI 60

Query: 66  RFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
             K+E     +T+    +       K ++++ ++QK+VE+G+  I PV  +         
Sbjct: 61  LAKIEDVHGMETELPVKITLYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCVVKLDAK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS 177
                + R  T  +SAA+Q     +P +      + +L+   D    +V  +E  G + S
Sbjct: 121 KAAKKVSRWNTIALSAAKQAKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQAS 180

Query: 178 LEKLHAIAHIPNVAILIGPEGG--------YHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            E +       ++                 +  EE E L +    T +SLG RILR++TA
Sbjct: 181 KELISQAKGKKSIG--------IIIGPEGGFEKEEIEQLKAAGGQT-MSLGKRILRTETA 231

Query: 230 AVAAMALVQ 238
            +  ++++ 
Sbjct: 232 GMTVLSILM 240


>gi|323126439|gb|ADX23736.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 252

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      +       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLTDEAEVVLVFDDGIKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGTSALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL-- 178
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRTETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 ISYAL 243


>gi|116747664|ref|YP_844351.1| hypothetical protein Sfum_0215 [Syntrophobacter fumaroxidans MPOB]
 gi|116696728|gb|ABK15916.1| protein of unknown function DUF558 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 254

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 14/249 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           KR FV+  +  +       D  H++ HVLR++ G+ + L +G  G WL  I   G  ++R
Sbjct: 4   KRFFVERAVPGEGTIDLGVDAAHHIEHVLRLRAGEEVELIDGVGGGWLGAIVEAGTGTVR 63

Query: 67  FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
            ++  +     + S ++    +  + +R+D +++++ E+G+       +R +Q       
Sbjct: 64  VRITGRLGPPAESSLNLSLALAFSRADRMDLVLRQATEIGVNRFIAFRSRRSQYALTGRA 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGS 174
               ++R +     A  QC  L +P +   + +  LL   +      N   + A E    
Sbjct: 124 AGKRLERWQRIAREAVCQCGRLNVPEMVILSDVRELLAKIEQRERSGNLLRILAFERGNG 183

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +  ++   A      V + +GPEGG+ SEE E L    F   + LGPRILR +TAA   +
Sbjct: 184 KGIVDLHRAFPQCTEVMVAVGPEGGWSSEEAELLTRNGF-HAVHLGPRILRLETAAAIVL 242

Query: 235 ALVQAICGD 243
           + VQ + GD
Sbjct: 243 SSVQLLWGD 251


>gi|254253271|ref|ZP_04946589.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158]
 gi|124895880|gb|EAY69760.1| hypothetical protein BDAG_02525 [Burkholderia dolosa AUO158]
          Length = 303

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 17/222 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDTALRADATLALPADVARH-AQVLRLQPGDALALFDGTGGQYRARLIEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  SALAQIDGFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVKLS 126

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    +P + P       L        D   +++ +   
Sbjct: 127 GERADKRVAHWRGVVRASCEQCGRNRVPHVAPVLGFNAWLDALPAAPADGELRLLLSPRA 186

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
                    L   A    V +LIGPEGG   +E+    +  F
Sbjct: 187 S---IPFASLPDAAPAAPVTLLIGPEGGLSPDEESAARARGF 225


>gi|332522528|ref|ZP_08398780.1| RNA methyltransferase, RsmE family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313792|gb|EGJ26777.1| RNA methyltransferase, RsmE family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 248

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+  P C         +   ++  V+R+ +GD + L      + L+ +S       
Sbjct: 1   MQQYFIKGP-CQNPVIIEDKETIKHMFQVMRLTDGDQVCLVFEDGIKRLAAVSDSAAHTF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             ++   +S      V       K ++L+++ QK  E+G  AI        V     +  
Sbjct: 60  TILQALDQSVELPVAVTIASGFPKGDKLEWVTQKVTELGASAIWGFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +++      AAEQ     +P +         L+       +  A E          
Sbjct: 120 AKKQEKLLKIAQGAAEQSKRNIIPEVELFEQKSAFLRQLSGFDYVFVAYEESAKIGEQAA 179

Query: 181 ----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L A     ++  + GPEGG   +E +   ++     + LGPRI+R++TA +  ++ 
Sbjct: 180 FATGLKACQPGDSLLFIFGPEGGLSPQEVQDFEAIG-AQMIGLGPRIMRTETAPLYVLSA 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|139474464|ref|YP_001129180.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           str. Manfredo]
 gi|134272711|emb|CAM30983.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 249

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      +       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLADEAEVVLVFDDGVKYLAKVTNSMAQEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKTEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|284052447|ref|ZP_06382657.1| 16S ribosomal RNA methyltransferase RsmE [Arthrospira platensis
           str. Paraca]
 gi|291566292|dbj|BAI88564.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 252

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+    L+R+ +        Q   +  Q HYL  VLR+++GD  ++ +G+ G WL+ I  
Sbjct: 1   MR---ELQRIAIAPEQFHDQQVDLTAGQQHYLGRVLRLQQGDRFIILDGRGGWWLA-IWK 56

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119
            G++    VE    +      V    S  K +  + +++ + E+G+  + P+I+  T   
Sbjct: 57  GGQNATV-VEPIRVNNELPIPVTLWVSMPKGSGFEEIVRCTTELGVSRLVPIISARTVVV 115

Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175
            +   + R R     AAEQ +   LP I  P +++     L +                 
Sbjct: 116 PSPQKLARWRRIATEAAEQSERQILPEITDPLSIQQAWETLSDQGEEVDKYICVARGDFP 175

Query: 176 NSLEKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           + L  L A            ++ + IGPEGG+ + E E   +  F  P+SLG RILRS T
Sbjct: 176 HLLNCLLASRTGQGKGYVYNSLLLAIGPEGGWTTPEVEEAINRGF-QPVSLGSRILRSVT 234

Query: 229 AAVAAMALVQAI 240
           A + A++LV A+
Sbjct: 235 APMVALSLVAAV 246


>gi|34541729|ref|NP_906208.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
           W83]
 gi|34398047|gb|AAQ67107.1| conserved hypothetical protein TIGR00046 [Porphyromonas gingivalis
           W83]
          Length = 248

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 9/231 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I+   +   D+  ++  VLRM+ GD + L +G+   + + I     KS    V  Q   Q
Sbjct: 11  IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQEPWQ 70

Query: 77  -TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K + R+++M++K VE+G+  +  + + +++      +R+    ISA
Sbjct: 71  KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-----IPN 189
            +Q    + P I     ++ ++ +       + A         + +             +
Sbjct: 131 MKQSLKASFPVIQVNIPIQTVIADTPKTAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           V ILIGPEG +   E E+     F  P+SLG   LR++TA + A   +  +
Sbjct: 191 VLILIGPEGDFSPSEVESALLAGFA-PVSLGESRLRTETAGLVACQWIHTL 240


>gi|319941739|ref|ZP_08016061.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804672|gb|EFW01539.1| hypothetical protein HMPREF9464_01280 [Sutterella wadsworthensis
           3_1_45B]
          Length = 249

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 15/246 (6%)

Query: 8   KRLFVDFP---LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            R F+D P     +  + +       +    LR+  G+ + LFNG    W   + +   S
Sbjct: 4   PRFFIDAPTDAFQLGGRFELPPKTARHAGRSLRLAAGEIVELFNGTGAAWSGPVGFSDAS 63

Query: 65  IRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
              ++E+++ R+      +  + S +   + D++++K+VE G+  I  +    +      
Sbjct: 64  AWVELEHRTDRTAESPLAITLLQSLVAPEKADWIVEKAVEAGISEIIFMPAERSVTKLAG 123

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + R+     SAAEQC    +P +    +LE   K    + + V A     S  S
Sbjct: 124 ERLEKRLARLTDIARSAAEQCGRNVVPLVRAVPSLEAGFKTVSGDVKFVLAPGADASAAS 183

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                 +  + +VA  +GPEGG+ + E E   +  +  P  LGPR+LR++TA +AA    
Sbjct: 184 ----SMLPGLLSVAFAVGPEGGFSAREIELAAAHGW-RPQLLGPRVLRTETAGLAAAIWA 238

Query: 238 QAICGD 243
           Q + GD
Sbjct: 239 QTLVGD 244


>gi|30248783|ref|NP_840853.1| hypothetical protein NE0779 [Nitrosomonas europaea ATCC 19718]
 gi|30180378|emb|CAD84690.1| Conserved hypothetical protein 46 [Nitrosomonas europaea ATCC
           19718]
          Length = 252

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 21/236 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           R F   P+        + D  H+ A VLR+K GD + LF+G  GE+  ++  + KS  + 
Sbjct: 4   RFFHTPPIRDAEWITLNSDTSHHAAQVLRLKPGDAVTLFDGTGGEFSGRLEQISKSGCQV 63

Query: 68  KVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           ++E     + +    ++   +     ++D++IQK++E G   I+P+ITR T      +  
Sbjct: 64  RIECHLPVERESPLMIELAQAVCANEKMDWIIQKAIEQGATRIQPLITRRTLIRLTGERA 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---------WDHNCQIVFADET 171
                  +   I+A EQC    +P + P   L   L+                I+ +   
Sbjct: 124 DKREQHWQKIIIAACEQCGRNQIPLLLPLMPLSHWLEQKLAEKYKNDNPAGHDIMLSP-- 181

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
             +   L +L        + +L GPEGG+  EE +  H   F+ P+ LG RILR++
Sbjct: 182 -AAHQRLVELSPPRTGECLTLLTGPEGGFTGEETDAAHLAGFI-PVRLGNRILRTE 235


>gi|309792795|ref|ZP_07687238.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6]
 gi|308225159|gb|EFO78944.1| hypothetical protein OSCT_3189 [Oscillochloris trichoides DG6]
          Length = 244

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 8/239 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           R FV   L      +    +  H L  VLR+  G  I+L +G+  ++  +++ V ++   
Sbjct: 6   RFFVAPELLTTEFVRLEDAELVHQLGRVLRLAAGTQIMLLDGQGNQYTLELTGVSRTCVT 65

Query: 68  -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTH-Y 122
            +V     +     D+    + I+  R ++++QK  E+G+    PV        + T   
Sbjct: 66  GRVLSTGPAPDPAYDLTLYVALIRPERFEWVLQKGTELGVRRFVPVHFSRCLPNERTDGR 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
             +R +     AAEQ     LP +  P +                  E        E L 
Sbjct: 126 KTERWQRIIREAAEQAWRGRLPELAAPLSFAAACTAVAATQYTYILWEGSAP-PLREHLA 184

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             A   + AIL GPEGG   +E         + P+SLGP ILR++TA + A A++    
Sbjct: 185 PSAATASYAILSGPEGGITPDEIALATQHG-IMPVSLGPHILRAETAPIMAAAVLCYAF 242


>gi|319943087|ref|ZP_08017370.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599]
 gi|319743629|gb|EFV96033.1| 16S rRNA methyltransferase RsmE [Lautropia mirabilis ATCC 51599]
          Length = 275

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 101/272 (37%), Gaps = 37/272 (13%)

Query: 8   KRLFVDF------PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
            R+ +        P              H+L  VLR   GD I +F+G+   W ++++  
Sbjct: 3   PRIHLPALADQPAPPVPSDPLPLDEPAAHHLLRVLRRGIGDEIEVFDGQGRCWHAQVAST 62

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--- 118
             +              +  +          ++D+ I+K+VE+G+  I P+++  +    
Sbjct: 63  KPATVTLQAALPAEPPPRLRLGLAQCLSTAEKMDWTIEKAVELGVSHIVPLLSARSVVKL 122

Query: 119 ---NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADET 171
                   +   +   ++AA QC    LP I P   +   L +      H  + V +   
Sbjct: 123 DGARAEKRVQHWQRLVVAAAMQCGRSRLPEIAPIQPVGTWLASLPAPQAHERRWVLSPLA 182

Query: 172 CGS--------------------ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
             S                    +  ++   + A  P   +L GPE G    E E   + 
Sbjct: 183 ESSLMAQASALAAQTGTPLAWDQDQPIDAAASEAATPTAWLLCGPESGLAETEVEQALAQ 242

Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +  P  LGPR+LR++TA +  + ++QA  GD
Sbjct: 243 GW-QPALLGPRVLRTETAGLVGLTVLQAALGD 273


>gi|188994065|ref|YP_001928317.1| 16S ribosomal RNA methyltransferase RsmE [Porphyromonas gingivalis
           ATCC 33277]
 gi|188593745|dbj|BAG32720.1| conserved hypothetical protein with DUF558 domain [Porphyromonas
           gingivalis ATCC 33277]
          Length = 248

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 9/231 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I+   +   D+  ++  VLRM+ GD + L +G+   + + I     KS    V  Q   Q
Sbjct: 11  IEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 70

Query: 77  -TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K + R+++M++K VE+G+  +  + + +++      +R+    ISA
Sbjct: 71  KPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 130

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-----IPN 189
            +Q    + P I     ++ ++ +       + A         + +             +
Sbjct: 131 MKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           V ILIGPEG +   E E+     F  P+SLG   LR++TA + A   +  +
Sbjct: 191 VLILIGPEGDFSPSEVESALLAGFA-PVSLGESRLRTETAGLVACQWIHTL 240


>gi|167580555|ref|ZP_02373429.1| hypothetical protein BthaT_20538 [Burkholderia thailandensis TXDOH]
          Length = 226

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 17/222 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 9   AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKR 67

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   +          V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 68  GALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 127

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADET 171
            +     +   R    ++ EQC    +P + P    +  L            +++ +   
Sbjct: 128 GERADKRVSHWRGVVRASCEQCGRNRVPDVAPVRGFDAWLDALPDAPAAGELRLLLSPRA 187

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
                    L       +V +LIGPEGG   +E++   +  F
Sbjct: 188 SV---PFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGF 226


>gi|167618664|ref|ZP_02387295.1| hypothetical protein BthaB_20312 [Burkholderia thailandensis Bt4]
          Length = 227

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 17/223 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ +++  + K 
Sbjct: 9   AAVPRFFVDAALRTGATLPLPADVARH-AQVLRLQPGDALALFDGTGGQYRAQLVEIDKR 67

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   +          V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 68  GALARIDAFDPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 127

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADET 171
            +     +   R    ++ EQC    +P + P    +  L            +++ +   
Sbjct: 128 GERADKRVSHWRGVVRASCEQCGRNRVPGVAPVRGFDAWLDALPDAPAAGELRLLLSPRA 187

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
                    L       +V +LIGPEGG   +E++   +  F 
Sbjct: 188 SV---PFASLPDAPPAGDVTLLIGPEGGLSPDEEQAARARGFA 227


>gi|225871292|ref|YP_002747239.1| hypothetical protein SEQ_2023 [Streptococcus equi subsp. equi 4047]
 gi|225700696|emb|CAW95299.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 248

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+      +   + +  D   ++  V+R+ + + ++L      + L+++S      
Sbjct: 1   MQQYFIKG--RAEKIVQLTDKDTIKHMFQVMRLTDKEELVLVFDDGIKRLARVSDSSAYE 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              ++    +     +V       K ++LD + QK+ E+G  AI        V+   ++ 
Sbjct: 59  VELIKELEENLEMPVEVTIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++    + AAEQ     +P I        LLK      +   A E         
Sbjct: 119 LAKKQEKLAKIALGAAEQSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERS 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +L  ++    V  + GPEGG  S+E  +      +T + LGPRI+R++TA + A++
Sbjct: 179 TLARELAGLSPGQKVLFIFGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALS 237

Query: 236 LVQAIC 241
            V    
Sbjct: 238 AVSYAL 243


>gi|195978884|ref|YP_002124128.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975589|gb|ACG63115.1| hypothetical protein Sez_1788 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 248

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 98/246 (39%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+      +   + +  D   ++  V+R+ + + ++L      + L+++S      
Sbjct: 1   MQQYFIKG--RAEKIVQLTDKDTIKHMFQVMRLTDKEELVLVFDDGIKRLARVSDSSAYE 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              ++    +     +V       K ++LD + QK+ E+G  AI        V+   ++ 
Sbjct: 59  VELIKELEENLEMPVEVTIASGFPKGDKLDVITQKATELGAAAIWGFPADWSVVKWDSKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++    + AAEQ     +P I        LLK      +   A E         
Sbjct: 119 LAKKQEKLAKIALGAAEQSKRNRVPEIQLFDQKGELLKQLKQFDKCFIAYEEAAKAGERS 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +L  ++    V  + GPEGG   +E         +T + LGPRI+R++TA + A++
Sbjct: 179 TLARELAGLSPGQKVLFIFGPEGGISPKELAGFKQAGAIT-VGLGPRIMRTETAPLYALS 237

Query: 236 LVQAIC 241
            V    
Sbjct: 238 AVSYAL 243


>gi|145588414|ref|YP_001155011.1| hypothetical protein Pnuc_0226 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046820|gb|ABP33447.1| protein of unknown function DUF558 [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 253

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 106/250 (42%), Gaps = 19/250 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS- 64
           + + ++  P   +     + +  H+L  V R++ G+   +F+G       ++  + GKS 
Sbjct: 1   MPQFYLPGPWESQKPTALTPEVAHHL-RVRRIQVGETFPVFDGLGQVAQGELLSLSGKSG 59

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
             +         +     +         +++D++++K+VE G   I P+    +      
Sbjct: 60  LAQLSNIRSDTHREAPYAITLAQGLAGGDKMDWIVEKAVETGAQIIAPLQCERSILKLTR 119

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETC 172
               +     +        +A EQCD   L  + P  T    L++      +++ + +  
Sbjct: 120 SSDLERAQKRLLHWEGIIQAACEQCDRTVLAKLEPIQTFSSYLQDGVKPKLKLLLSPDAT 179

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
               SL  +       N+ ++IGPEGG+  +E++   +  +   +SLG R+LR++TA V 
Sbjct: 180 ---QSLYSVLIENEPQNIILMIGPEGGHSPDEEKQAETAGY-QLVSLGERVLRTETAGVV 235

Query: 233 AMALVQAICG 242
           A+  V ++ G
Sbjct: 236 AITAVHSVWG 245


>gi|71904341|ref|YP_281144.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS6180]
 gi|71803436|gb|AAX72789.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180]
          Length = 249

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      +       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLADKAEVVLVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSGFDHIFVAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|167042827|gb|ABZ07545.1| putative protein of unknown function (DUF558) [uncultured marine
           microorganism HF4000_ANIW137I15]
          Length = 261

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 120/245 (48%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           +    VD       Q + + ++  ++   +R K GD I + +G+  E+  +++ +  +  
Sbjct: 1   MPVFRVDPGNVRARQLRFTAEEAGHI-RAMRHKRGDVIRVSDGEFTEYEVELTELTHQGA 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
             ++  +      +  ++   +  K  +LD ++QK+VE+G+  I P+    +        
Sbjct: 60  AGRIRGRKEIPEDRVVIRLGQAVPKGEKLDGVVQKAVELGVHFIHPIFAERSVPRLDERR 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178
               + R R    +A +QC+ +    +  P +L  FL ++ D + ++V  + +       
Sbjct: 120 AADRLKRWRRVAEAARKQCERVRPMEVAAPGSLLSFLDESEDADLKVVLHERSTVG--LR 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L     I +VA+L+GPEGG+   E +T  +  F+ P  LG RILR++TA +AA+A+++
Sbjct: 178 KILSDTRDIRSVALLVGPEGGFSETEVQTARTAGFI-PCGLGTRILRTETAPIAAIAILE 236

Query: 239 AICGD 243
            + GD
Sbjct: 237 YVLGD 241


>gi|251796224|ref|YP_003010955.1| hypothetical protein Pjdr2_2213 [Paenibacillus sp. JDR-2]
 gi|247543850|gb|ACT00869.1| protein of unknown function DUF558 [Paenibacillus sp. JDR-2]
          Length = 258

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 19/254 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV       +  +  G+   +   V+RMK  +  +  +G     L+ +     S  
Sbjct: 1   MQRYFVAAEQFDGSSVRLIGEDAFHAVRVMRMKPEEKFIASDGISRVVLASVREAASSEV 60

Query: 67  FK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
               VE           V    S  K ++++ +IQK  E+G  A  P  +         +
Sbjct: 61  VADIVEELPMDSESSWSVTIAQSLPKGDKMELVIQKGTEIGAYAFAPFQSERMIVQYDGK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R       AAEQ     +P I P  +   L +        +F  E  G   + 
Sbjct: 121 KEAKRLERWSKIAKEAAEQSHRCRVPAIEPVRSWRELKEVIPTFDLALFCYEREGDAAAG 180

Query: 179 EKLHA----------IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             +            +A  P V +++GPEGG+    +           + LG RILR++T
Sbjct: 181 TGIRDAVLNWKQAGHMAAEPKVLLIVGPEGGFTER-EADEAEAAGAVIVGLGRRILRTET 239

Query: 229 AAVAAMALVQAICG 242
           A +  +  +    G
Sbjct: 240 AGIVGLTCLLYEAG 253


>gi|294338581|emb|CAZ86910.1| putative Ribosomal RNA small subunit methyltransferase E (16S rRNA
           m3U1498 methyltransferase) rsmE [Thiomonas sp. 3As]
          Length = 236

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 14/234 (5%)

Query: 9   RLFVD--FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           R ++     +              +   VLR+KEG+ + +F+G  GEW  ++  +     
Sbjct: 4   RFYIPPTEAMLAPGLLTLPAATAKH-VKVLRLKEGEPVAVFDGTGGEWSGEV--IDPKTL 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
               + +  +     V          R+D +++K+VE+G+ AI+P+ITR +      +  
Sbjct: 61  LLRTHHAVEREADVRVMLAVGMPANERMDALVEKAVELGVAAIQPLITRRSVLRLQGERA 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +   +   I+A EQC    +P + P  TL   L++  ++   +       S  +   
Sbjct: 121 QRRVAHWQGVAIAACEQCGRNRVPEVAPVATLSDWLQHLGNDNARL--HRCVLSPLATRA 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           L   A   +  ++ GPEGG   +E   L    F   +SLGPR+LR+DTA +AA+
Sbjct: 179 LEPFAAGESGWMVSGPEGGLGEDEIALLQRSGF-QAVSLGPRVLRADTAPLAAL 231


>gi|121606961|ref|YP_984290.1| 16S ribosomal RNA methyltransferase RsmE [Polaromonas
           naphthalenivorans CJ2]
 gi|120595930|gb|ABM39369.1| protein of unknown function DUF558 [Polaromonas naphthalenivorans
           CJ2]
          Length = 250

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 21/237 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD---GEWLSKISYVGKSI 65
           R + D  L   T          +   VLR++ G+ I LFNG+    GE+ + +  +G+S 
Sbjct: 4   RFYADVALAAGTSISLPEQTARH-VQVLRLQPGERITLFNGRGDTEGEFDATVERMGRSD 62

Query: 66  RFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  + + ++     +  +      +R+D++I+K+ E+G  +I+PV++  +      
Sbjct: 63  VDVTIGAWTATAREAARTIHLVVGMPANDRMDWLIEKATELGAASIQPVMSERSVLRLKA 122

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-------NWDHNCQIVFADE 170
           +     +   R   I+++EQC    +P I+   TL   LK           N   +    
Sbjct: 123 ERADKKVAHWRGIAIASSEQCGRNRVPLIHDVATLGEWLKKSTAETGAAASNGMRLLLSL 182

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
             GS    E + + A + +   L GPEGG    E+    +  F +P++LGPR+LR++
Sbjct: 183 QDGSRPLAEAVASTA-LASFTFLNGPEGGLSPAEEAAALACGF-SPVTLGPRVLRAE 237


>gi|300775606|ref|ZP_07085467.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300505633|gb|EFK36770.1| RsmE family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 231

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQT 77
                 + ++  ++  VLRMK+G++I + +GK      K+   GK    ++ E +     
Sbjct: 10  GNNVIINDEEQQHIVKVLRMKDGEDIHVTDGKGKLASGKLIIEGKKAGIEISEIKENMPE 69

Query: 78  KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAE 136
               +    +P K  +R+++ ++K+VEMG+  I  + T  T+  + N+D++R   ++A++
Sbjct: 70  FSPMLHIAIAPTKNIDRIEFFVEKAVEMGISEITILQTEKTERKNVNIDKIRKQAVAASK 129

Query: 137 QCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           Q      P I     ++  LK+ D  +  +    E          L  I  +  +  LIG
Sbjct: 130 QSLRFHFPVINDLIKIQDFLKSIDPEHTFVAHCHENLERI----ALKNIPKMEKLTFLIG 185

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           PEG +  +E   L     V  +SLG + LR++TA V  +A    
Sbjct: 186 PEGDFSEKEIAFLAENK-VRAVSLGNQRLRTETAGVF-VAAWNY 227


>gi|110638000|ref|YP_678207.1| 16S ribosomal RNA methyltransferase RsmE [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110280681|gb|ABG58867.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 234

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 111/239 (46%), Gaps = 12/239 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64
           +  LF++  +           +  ++  VLR+KEGD I + NG      ++I+     K 
Sbjct: 1   MSHLFLNKDVY---SCILDEQESVHVVKVLRLKEGDAITVTNGNGIVVSAQITKADHRKC 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               +E Q  ++   + +    +P K  +R++++++K  E G+ A   V+T +++  +  
Sbjct: 58  GYKIIEEQKLNKRSAARIHIAIAPTKNIDRMEWLVEKCTEFGIDAFSFVLTEHSERKNLP 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKL 181
           + ++     +A +Q     LP      +    L++   D++ +++   +       L+ +
Sbjct: 118 VAKLEKTAFAAIKQSGQPFLPHFSELLSFTAFLQSDFSDYDYKLIACLDEAPKSTILKLV 177

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                  +  +LIGPEG +  +E  +     FV  +SLG  ILR++TAA+A+  ++  I
Sbjct: 178 Q---PAKSCLVLIGPEGDFTQQEVRSAVEKGFVK-ISLGNSILRTETAAIASCHILNLI 232


>gi|303233811|ref|ZP_07320465.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4]
 gi|302495245|gb|EFL54997.1| RNA methyltransferase, RsmE family [Finegoldia magna BVS033A4]
          Length = 241

 Score =  207 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F +    I  +    G+ Y+++ + LR+ +G  I    G D  ++++I  +    I
Sbjct: 1   MYRTFRNQEDKIDDKILIKGEDYNHIKNSLRLSKGSLIHQVIG-DTIFVTEIEEITSNEI 59

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
             K+  +   Q     ++      +K+++ +Y+IQK+ E+G+  I  V T  T     + 
Sbjct: 60  ICKIIDEDSIQYESPLNITLYQCILKSDKNEYIIQKATELGVNKIIFVETERTVVKLDDK 119

Query: 125 D------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                  R     + +++Q     +P I     +   +KN  +   +VF +     + S 
Sbjct: 120 KWNKKKDRFEKIALESSKQSKRTVIPEIEGLIKINE-IKNTSNCLNLVFYENE---KESF 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +     +   ++ I IGPEGG   +  + L S  F   +SLG RILR+DTA + A++++Q
Sbjct: 176 KSFLYNSKNKDINIFIGPEGGLSEDNIQDLSSKGF-KSVSLGNRILRADTAPICALSIIQ 234

Query: 239 AICGD 243
              GD
Sbjct: 235 YELGD 239


>gi|199599340|ref|ZP_03212738.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001]
 gi|199589779|gb|EDY97887.1| hypothetical protein LRH_09433 [Lactobacillus rhamnosus HN001]
          Length = 242

 Score =  207 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 10/242 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F +  L  +           +   VL    G    L + K   + +K+        
Sbjct: 1   MQRFFTEHLLHSQQTVTLEPAIAKHAIKVLHYDVGAVFELADPKHRVYQAKVQTTDPLTV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +++      V+ +    K ++ ++++QK+ E+G   I     ++       +  
Sbjct: 61  EIGPEITKNVELPIAVEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERI 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              MDR+ T   +AAEQ     +P +     L  +    D   ++V  +E+         
Sbjct: 121 AKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGD--DAAVKLVAYEESAKKGEHAAL 178

Query: 181 LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           + A+  H  ++ ++ GPEGG    E   L +  F TP  LGPRILR++TA +  ++ V  
Sbjct: 179 VSALVPHPASLCVVFGPEGGISPAELALLQARGF-TPAGLGPRILRTETAPLYLLSAVSV 237

Query: 240 IC 241
           + 
Sbjct: 238 LT 239


>gi|134267587|gb|ABO67782.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 229

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 13/218 (5%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS--PIKTNR 93
           +RMK GD I          + +I  +          Q + + ++  V+   +    K  +
Sbjct: 1   MRMKPGDAIACVFPDGRTAVCQIEQIANEQVCARIVQWKEEGRELPVRIYIAQGLPKGEK 60

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            + +IQK  E+G     P +   +      +     ++R +     AAEQ +   LP + 
Sbjct: 61  WELVIQKGTELGAAGFLPFVAARSVVKWDAKKAEKKVERWKKIAKEAAEQAERTLLPIVR 120

Query: 148 PPTTLEFLLKNWDHNCQIVFADETC---GSENSLEKLHA-IAHIPNVAILIGPEGGYHSE 203
            P +L+ L+   +     +FA E     G   SL  L A +    ++  + GPEGG+  E
Sbjct: 121 APLSLKELIAFGETVDSRLFAYEEEARGGRHASLPALLADLQPGSSLLAVFGPEGGFSRE 180

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           E E L    F+ P SLGPRILR++TA +  +A      
Sbjct: 181 EAEQLKQSGFL-PCSLGPRILRTETAPLYLLAAASYEW 217


>gi|255003188|ref|ZP_05278152.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str.
           Puerto Rico]
          Length = 244

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 9   RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RL+     + +  +   +  Q HY+  V+R K GD +LLF+G  GEWL +IS + K  + 
Sbjct: 12  RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRISCISKKTVE 71

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            + E   R   +   +   F+ +K   +  +++++ EMG+   +P+ T Y+     +  +
Sbjct: 72  VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSVHDIDSRK 131

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R + + A+EQC    +P + P      L +  + + Q V  DET G +   E L     
Sbjct: 132 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 191

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              V +++GPEGG+ +EE  +     F   +SLG RIL+ DTA V A+A V 
Sbjct: 192 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 238


>gi|288927552|ref|ZP_06421399.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330386|gb|EFC68970.1| RNA methyltransferase, RsmE family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 240

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 8/236 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-- 67
            +V          +   ++  + + VLR++ GD + L +G    + ++++ V K      
Sbjct: 7   FYVPDAASTN---ELPAEEAAHASRVLRLESGDEVFLIDGTGCFFKAQLTLVTKGRCLYD 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            VE   + +T    +    +P K  +R+++ ++K+ E+G+     +   +++  +  ++R
Sbjct: 64  IVERLPQEKTWNGRIAVAMAPTKVIDRVEWTLEKATEIGIDEFSLLNCAFSERRNVKLER 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185
           +    ++A +Q      P +      E  +K      + I         ++   +L  + 
Sbjct: 124 LDKIVVAAVKQSRKAWKPLLNDLQPFENFVKQPRKGAKYIAHCYAEIDKKDLYGELLQLN 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               V ILIGPEG +  +E     S  +V P+SLG   LR++TAA+AA  + Q   
Sbjct: 184 GDEEVTILIGPEGDFSIDEVRLAMSKGYV-PISLGQSRLRTETAALAATMIAQLAF 238


>gi|320106034|ref|YP_004181624.1| hypothetical protein AciPR4_0797 [Terriglobus saanensis SP1PR4]
 gi|319924555|gb|ADV81630.1| protein of unknown function DUF558 [Terriglobus saanensis SP1PR4]
          Length = 237

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 10/227 (4%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           T    +GDQ  +LA VLR + G    +  G      +++  VG+       ++       
Sbjct: 16  TSASLTGDQASHLARVLRAEPGQIFDVVAG-GFLHRAEVVNVGEDAVIFTLHEEMESDAA 74

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISA 134
             V    +  K + L++ I+K+ E+G+  I PV+ R T+      +   ++R R   + +
Sbjct: 75  LPVHLYLAVYKFDHLEWAIEKATELGVARITPVLARRTEKHLAQASTKRVERWRRIVLES 134

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           ++Q     +P +  P TL   LK      +I+ A+     EN+L       H  ++A+ +
Sbjct: 135 SKQSRRTEIPVVDDPATLASTLKTCTAGTRILLAE--TEQENTLAAALK-GHAGDIALAV 191

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GPEGG+  EE     +  +    +LGPRILR++TA +AA+A+  +I 
Sbjct: 192 GPEGGWTPEEMALFSTQQWTHA-TLGPRILRAETACIAALAITSSIL 237


>gi|296134635|ref|YP_003641877.1| protein of unknown function DUF558 [Thiomonas intermedia K12]
 gi|295794757|gb|ADG29547.1| protein of unknown function DUF558 [Thiomonas intermedia K12]
          Length = 236

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 14/234 (5%)

Query: 9   RLFVD--FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           R ++                    +   VLR+KEG+ + +F+G  GEW  ++  +     
Sbjct: 4   RFYIPPTEATLAPGLLTLPAATAKH-VKVLRLKEGEPVAVFDGTGGEWSGEV--IDPQTL 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
               + +  +     V          R+D +++K+VE+G+ AI+P+ITR +      +  
Sbjct: 61  LLRAHHAVEREADVRVMLAVGMPANERMDALVEKAVELGVAAIQPLITRRSVLRLQGERA 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +   +   I+A EQC    +P + P  TL   L++  ++   +       S  +   
Sbjct: 121 QRRVAHWQGVAIAACEQCGRNRVPEVAPVATLSDWLQHLGNDNAQL--HRCVLSPLATNP 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           L   A   +  ++ GPEGG   +E   L    F   +SLGPR+LR+DTA +AA+
Sbjct: 179 LRPFASGESGWMVSGPEGGLGEDEIALLQRSGF-QAVSLGPRVLRADTAPLAAL 231


>gi|157803384|ref|YP_001491933.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia canadensis
           str. McKiel]
 gi|157784647|gb|ABV73148.1| hypothetical protein A1E_01000 [Rickettsia canadensis str. McKiel]
          Length = 257

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 13/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + + D  HY+  VLR+K  D + +FNG DGE+L++I+ 
Sbjct: 1   MKYN----RIYINSHLAENSKLELANDHIHYIKTVLRLKVNDGLRIFNGTDGEFLAQITD 56

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ- 118
           +GK+ +  K++ Q +    +S +    + IK ++L   I  + ++G+  I P+IT+  Q 
Sbjct: 57  IGKNNLSVKLKEQLKKPDTESALTLAVAIIKQDKLMLTINMATQLGITKIIPLITKRCQF 116

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                 N+ R+    I A EQ + L  P I     L+  LK   +N  +++A+E    EN
Sbjct: 117 RSV---NIKRLTKCMIEATEQSERLIPPIIEQAIKLQDYLK--KNNNLMLYANEYEKEEN 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ ++ +  ++ I+IGPEGG+  +E + L S      +SLG  ILR
Sbjct: 172 SILQITSLLNNSDIDIVIGPEGGFTIDELQLLASYKNTKSISLGSNILR 220


>gi|189184337|ref|YP_001938122.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda]
 gi|189181108|dbj|BAG40888.1| hypothetical protein OTT_1430 [Orientia tsutsugamushi str. Ikeda]
          Length = 263

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK+   L R++   PL      K S +Q +Y+ +VLR K  D I +FN  +GE+L+ I +
Sbjct: 1   MKLK-KLHRIYSSIPLSKAGTIKLSREQTNYIINVLRCKNNDKIRVFNELNGEYLAIIHH 59

Query: 61  VG-KSIRFKVEYQS-----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
              K +  ++  Q+           S +      IK  R+  +I  + + G+  I P+I+
Sbjct: 60  TNNKQVLLQIINQTKVVEKEVDENNSPLVLAQCIIKPERMARVIDMATQAGITNIVPIIS 119

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            Y+Q+  +N+++     I +  Q + LT+P +  P TL   L   +  C  +        
Sbjct: 120 EYSQHLKFNIEKYNKIIIESCRQSERLTMPILSSPVTLSHFLSQSNSGC--ILCANEQER 177

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAA 233
              +  + A + +   +ILIGPEGG+  +++  L      +  +S+G  +LRS+TAA+  
Sbjct: 178 IQQIHHIPA-SILSKASILIGPEGGFSEQDQSILRKAGGLIKSISIGRNVLRSETAAIYL 236

Query: 234 MALVQAI 240
           ++ +Q +
Sbjct: 237 LSQLQLL 243


>gi|160901468|ref|YP_001567050.1| 16S ribosomal RNA methyltransferase RsmE [Delftia acidovorans
           SPH-1]
 gi|160367052|gb|ABX38665.1| protein of unknown function DUF558 [Delftia acidovorans SPH-1]
          Length = 250

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 20/237 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60
           + R      L              +   VLR++ GD I LF G+       GE+ + +  
Sbjct: 1   MPRFHCPIALRSGADIDLPPGAARH-VQVLRLQPGDGITLFEGRAGEGFSGGEFEATVLR 59

Query: 61  VGKS-IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           +G+S +  ++      + +    V  +       R+D++++K+ E+G  +I P++   + 
Sbjct: 60  MGRSDVAVRIGAHHAVEREPLRPVHLLAGITANERMDWLVEKAAELGAASITPLVAERSV 119

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK----NWDHNCQIVFA 168
                +     +   +   +SA EQC    +P ++ P  LE  L+            +  
Sbjct: 120 LKLKGERAEKKLAHWQAVAVSACEQCTRNRVPPLHTPADLEDWLESGAQQLPPGTLRLLL 179

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
               G+    E L A A    V  L GPEGG    E+    +  FV P++LGPR+LR
Sbjct: 180 SLGEGTRPLGEVLDATAEDAPVVFLSGPEGGLSPAEEALARAQGFV-PVTLGPRVLR 235


>gi|332712271|ref|ZP_08432199.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L]
 gi|332349077|gb|EGJ28689.1| RNA methyltransferase, RsmE family [Lyngbya majuscula 3L]
          Length = 259

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 18/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++RL +            +  Q HYL  VLR+++GD  +  +G+ G ++S++   G   +
Sbjct: 1   MQRLVISPAQRQDQGIVLTDAQQHYLIRVLRLRKGDRFIAMDGEGGWYVSELE--GDLTQ 58

Query: 67  FKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123
            K+      QT+    V  + +  K +  + +   + E+G+  I P+ +  T    +   
Sbjct: 59  AKIVASEHIQTELPKQVTLMAAMPKGSGFEQICLMATELGVTRIVPLKSDRTLLNPSPQK 118

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEF---LLKNWDHNCQIVFADETCGSENSLEK 180
           + R R  T  AAEQ +   +P I  P        L +  +    I  A        +   
Sbjct: 119 LQRWRRITQEAAEQSEREVVPKILEPVDFSDSLQLPETREAYRYICVARGKAPHLLNCLL 178

Query: 181 L---------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                        A  P + I  GPEGG+ ++E E   +  F+  +SLG RILR+ TA +
Sbjct: 179 DLRLGFDTGQTDPAQHPGIVIATGPEGGWTTQELEQATAAGFI-AVSLGSRILRAITAPI 237

Query: 232 AAMALVQAI 240
            ++++V A+
Sbjct: 238 VSLSIVAAV 246


>gi|196248968|ref|ZP_03147668.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16]
 gi|196211844|gb|EDY06603.1| protein of unknown function DUF558 [Geobacillus sp. G11MC16]
          Length = 282

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 12/224 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV            SGD  H++A V+RMK GD I          + +I  +     
Sbjct: 1   MQRYFVSDRERQGENVVISGDDAHHIARVMRMKPGDAIACVFPDGRTAVCQIEQIANEQV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                Q + + ++  V+   +    K  + + +IQK  E+G     P +   +      +
Sbjct: 61  CARIVQWKEEGRELPVRIYIAQGLPKGEKWELVIQKGTELGAAGFLPFVAARSVVKWDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175
                ++R +     AAEQ +   LP +  P +L+ L+   +     +FA E     G  
Sbjct: 121 KAEKKVERWKKIAKEAAEQAERTLLPIVRAPLSLKELIAFGETVDSRLFAYEEEARGGRH 180

Query: 176 NSLEKLHA-IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            SL  L A +    ++  + GPEGG+  EE E L    F    S
Sbjct: 181 ASLPALLADLQPGSSLLAVFGPEGGFSREEAEQLKQSGFCRAAS 224


>gi|294793688|ref|ZP_06758825.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44]
 gi|294455258|gb|EFG23630.1| RNA methyltransferase, RsmE family [Veillonella sp. 3_1_44]
          Length = 252

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 14/249 (5%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISY 60
               +K++F+  PL      +   D  H++ HV R      I +   + + G +      
Sbjct: 6   ARKTMKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEV 63

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
            GK  + K+               + S +K  +L++++QK+ E+ +  I  V T      
Sbjct: 64  DGK-AQAKLIEYVEGNLASYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAK 122

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +     ++R     + AA+QC    LP +    TL   L       ++V  +   G 
Sbjct: 123 YDEKKLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQ 182

Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             ++ L+ LH+   + +V I IGPEGGY  +E   +        +SLG  ILR++TAA+ 
Sbjct: 183 TIKDVLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIG 241

Query: 233 AMALVQAIC 241
           ++A+++   
Sbjct: 242 SLAMIRYEL 250


>gi|303229102|ref|ZP_07315904.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516226|gb|EFL58166.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 243

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 18/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           +K++F+  PL          D  H++ HV R      I +  G D      I  +   I 
Sbjct: 1   MKKIFIPTPL--DESIVLPKDVTHHILHVFRHNIEKPITVT-GSDN--RCGIYQINDEIN 55

Query: 66  ---RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
              +  +     S T       + S +K  +L++++QK+ E+ +  +  V T        
Sbjct: 56  GLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYLVPTSNCVAKYD 115

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--S 174
            +       R     + A++QC    LP +     L  +L     + ++V  +   G   
Sbjct: 116 AKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVGEPLSNVLDIESESLKLVAYENEAGYTI 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +++L+ +++ +   ++ I IGPEGG+  +E   +        ++LG  ILR++TAA+AA+
Sbjct: 176 KDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGG-QSVTLGHTILRAETAAIAAL 234

Query: 235 ALVQAIC 241
           ++V    
Sbjct: 235 SMVHYEL 241


>gi|219848626|ref|YP_002463059.1| 16S ribosomal RNA methyltransferase RsmE [Chloroflexus aggregans
           DSM 9485]
 gi|219542885|gb|ACL24623.1| protein of unknown function DUF558 [Chloroflexus aggregans DSM
           9485]
          Length = 251

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 9/240 (3%)

Query: 9   RLFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR- 66
           R FVD       +         H    VLR+  GD +LL +GK    + + + + +    
Sbjct: 12  RFFVDPVWLRGDEILIDDPSLLHQWTRVLRLTAGDRVLLLDGKGMAAVVQFTAIDRRRAQ 71

Query: 67  -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--- 122
            + +            +    + I+  R ++ +QK+VE+G   I PV    + +      
Sbjct: 72  GYVLTRCHAGGELAVVIDLYLALIRPERFEWALQKAVELGARRIIPVAFARSLSGDRIDT 131

Query: 123 -NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +     AAEQ     LP +  P      +         +  DE     +  + +
Sbjct: 132 HRLMRWQRIATEAAEQSGRGRLPEVSAPQPFSAAVVAGGRADLALMLDE-QAEHHLRDIV 190

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            +   +  +AI+ GPEGG    E+       FV  +SLGPRILR++TA +AA+A++Q   
Sbjct: 191 TSPTSLRQIAIISGPEGGIDPRERRAAIDHGFV-AVSLGPRILRAETAPLAALAMLQYAL 249


>gi|294791827|ref|ZP_06756975.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27]
 gi|294457057|gb|EFG25419.1| RNA methyltransferase, RsmE family [Veillonella sp. 6_1_27]
          Length = 252

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 14/249 (5%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISY 60
               +K++F+  PL      +   D  H++ HV R     +I +   + + G +      
Sbjct: 6   ARKTMKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKSITVTGSDNRCGTYQITAEV 63

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--- 117
            GK  + K+               + S +K  +L++++QK+ E+ +  I  V T      
Sbjct: 64  DGK-AQAKLIEYVEGNLASYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAK 122

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
              +     ++R     + AA+QC    LP +    TL   L       ++V  +   G 
Sbjct: 123 YDEKKLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQ 182

Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             ++ L+ LH+   + +V I IGPEGGY  +E   +        +SLG  ILR++TAA+ 
Sbjct: 183 TIKDVLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIG 241

Query: 233 AMALVQAIC 241
           ++A+++   
Sbjct: 242 SLAMIRYEL 250


>gi|323340773|ref|ZP_08081025.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323091896|gb|EFZ34516.1| RsmE family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 250

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 16/249 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---- 62
           ++R F +           S D Y +   V+RMK G    L        + ++  +     
Sbjct: 1   MQRYFSEQNFS-GNTLNLSEDVYKHAVVVMRMKAGSKFELVTPDKVVHVMELVTIDSAKK 59

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           +++  + E          +   +    K ++ D ++ K+ E+G+  I      ++     
Sbjct: 60  QAVAHECERFEHQVELPVEATIVCGLPKNDKTDLIVMKATELGVSKIVFFAGDWSVARWA 119

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q     ++R++    SAAEQ    T+P +     LE LL + D      + +     E 
Sbjct: 120 KQKQAKKLERLQKIAKSAAEQSHRTTIPEVSYLDGLEDLLPDEDTVGLCAYEESAKAGEK 179

Query: 177 ----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                +  +        V  + GPEGG   +E E L    F     LGPRI+R++TA + 
Sbjct: 180 GMLVKVFDVLKTGEKKKVTAVFGPEGGISPKEVELLKKKGFSFA-GLGPRIMRAETAPLY 238

Query: 233 AMALVQAIC 241
            ++ +    
Sbjct: 239 FLSALSFAL 247


>gi|306826580|ref|ZP_07459887.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304431218|gb|EFM34220.1| RsmE family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 249

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      +       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKEVTIT-DKDTIKHMFQVMRLADKAEVILVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIETLPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|326520946|dbj|BAJ92836.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 347

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 109/249 (43%), Gaps = 11/249 (4%)

Query: 2   KIHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +    L R      P       +  GD++ ++  VLR+   D + LF+G  G     I  
Sbjct: 90  RARGGLPRFHSPSLPSSKGEVVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQK 149

Query: 61  VGKSIR-FKVEYQSRSQTKQSDVQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRY 116
           V K+    ++   +R    Q    ++F+    +K  R D++I+K  E+G  ++ P++T  
Sbjct: 150 VDKNGSDVELLENARLIAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTER 209

Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +DR++   ++A +QC  +    + PP  +  L      +     A  +  + 
Sbjct: 210 CHTIAENRVDRLQRLVLAAVKQCQRVHDMSLKPPIQIHDLPLAVSQSKLAFLA--SAEAP 267

Query: 176 NSLEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             L  L    +   +  ++IGPEG +  EE + L +   V P+ LGP  LR +TA ++ +
Sbjct: 268 PVLSVLPKCGSEEESGLLIIGPEGDFTEEEVKVLKAAGAV-PVGLGPCRLRVETATISLL 326

Query: 235 ALVQAICGD 243
           + +  +  D
Sbjct: 327 SALM-LWSD 334


>gi|225429203|ref|XP_002271957.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 287

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R F +  P       +  GD++ ++  VLR+   D + LFNGK G     I+ + ++ 
Sbjct: 42  LPRFFSEVLPPSKGGIVRVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTG 101

Query: 66  RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120
              +  +       Q+ +  V   F  +K  R D++++K  E+G  ++ P++T  + + +
Sbjct: 102 LDFIALEDPKLVLPQSSRWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSIS 161

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR++   ++AA+QC  L    + PPTT++ LL     +   + A     +      
Sbjct: 162 ENRVDRLQRVILAAAKQCQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSV 219

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L +        ++IGPEG +  +E   +      T + LGP  LR +TA +A +A +  +
Sbjct: 220 LTSSRRESTGLMIIGPEGDFTEKELNMMREAG-ATAVGLGPHRLRVETATIALLATLM-L 277

Query: 241 CGD 243
             D
Sbjct: 278 WSD 280


>gi|302037061|ref|YP_003797383.1| putative Ribosomal RNA small subunit methyltransferase E
           [Candidatus Nitrospira defluvii]
 gi|300605125|emb|CBK41458.1| putative Ribosomal RNA small subunit methyltransferase E
           [Candidatus Nitrospira defluvii]
          Length = 245

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 10/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   F+      +TQ   +GD  H+L   LR+K G+++ L +     +  ++  V +   
Sbjct: 1   MPAFFISSSDIRETQITLTGDLCHHLRASLRVKSGEHLWLTDEHRRRYRVRVLQVAQQAV 60

Query: 67  FKVEYQSR--SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
                + R         +    + +K + +D+++QK+ E+G+  I P+++R+      T 
Sbjct: 61  TAEILEQRQGPVESSPPLLLAQAMLKGDHMDWVVQKASELGVRTILPLVSRHGVVRPQTD 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +     AA+Q +    P +  P             C ++ A+       + 
Sbjct: 121 RIAAQVARWQRIATEAAQQSEQWQPPQVLEPLESRRFFSTHTATCSLLLAERREALALAS 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             L  +     + ++IGPEGG+  EE     +      +SLG  ILR+DTAAV A+++VQ
Sbjct: 181 VPLPRLPSEQ-ICVIIGPEGGWAEEEITLALAQ-HCQAVSLGECILRADTAAVTALSIVQ 238

Query: 239 AICGD 243
           +  G 
Sbjct: 239 SRLGR 243


>gi|288925123|ref|ZP_06419059.1| RNA methyltransferase, RsmE family [Prevotella buccae D17]
 gi|288338313|gb|EFC76663.1| RNA methyltransferase, RsmE family [Prevotella buccae D17]
          Length = 244

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 104/236 (44%), Gaps = 11/236 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68
            +V        Q +   ++  +   VLR+K GD + L +G    + ++++ V GK   ++
Sbjct: 7   FYVPDAAR---QSELPEEEAGHALRVLRLKAGDEMFLMDGVGTFFRAEVTVVAGKHCMYE 63

Query: 69  VEYQ-SRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           ++ +  +  T +  +    +P K   R+++M++K+ E+G   I  +  ++++      DR
Sbjct: 64  IKDRFPQHPTWRGHIHLAIAPTKMMERMEWMVEKATEVGFDEISFLGCKFSERKVLRADR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAI- 184
           V    +SA +Q      P +    +    +         I    E    ++   ++    
Sbjct: 124 VEKIVVSAMKQSRKAWKPVVNTMCSFGEFMAVEHPGRKYICHCYEEFPKKDFFSEIQETI 183

Query: 185 --AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                 ++ +L+GPEG +  +E +      + + +SLG   LR++TA ++A+ +  
Sbjct: 184 DYEDNEDILVLVGPEGDFSVDEVQLALEKGYES-VSLGRSRLRTETAGLSAVMMAN 238


>gi|50915045|ref|YP_061017.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS10394]
 gi|50904119|gb|AAT87834.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394]
          Length = 249

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      +       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKRVTIT-DKDTIKHMFQVMRLTDEAEVILVFDDGVKYLAKVTSSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       + ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTVASGFPRGDKLDTIAQKVTELGANALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFVAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKLLFIFGPEGGISPAEITQFEAAGAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|209523429|ref|ZP_03271984.1| protein of unknown function DUF558 [Arthrospira maxima CS-328]
 gi|209496171|gb|EDZ96471.1| protein of unknown function DUF558 [Arthrospira maxima CS-328]
          Length = 252

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+    L+R+ +        Q   +  Q HYL  VLR++ GD  ++ +G+ G WL+ I  
Sbjct: 1   MR---ELQRIAIASEQFHDQQVDLTAGQQHYLGRVLRLQPGDRFIILDGRGGWWLA-IWK 56

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN- 119
            G++    VE    +      V    S  K +  + +++ + E+G+  + P+++  T   
Sbjct: 57  GGQNATV-VEPIRINNELPIPVTLWVSMPKGSGFEEIVRCTTELGVSRLVPIMSARTVVV 115

Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175
            +   + R R     AAEQ +   LP I  P +++     L +                 
Sbjct: 116 PSPQKLARWRRIATEAAEQSERQILPEITDPLSIQQAWETLSDQGEEVDKYICVARGDFP 175

Query: 176 NSLEKLHAIAHIP-------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           + L  L A            ++ + IGPEGG+ + E E   +  F  P+SLG RILRS T
Sbjct: 176 HLLNCLLAARTGQGKGYVYNSLLLAIGPEGGWTTPEVEEAINRRF-QPVSLGSRILRSVT 234

Query: 229 AAVAAMALVQAI 240
           A + A++LV A+
Sbjct: 235 APMVALSLVAAV 246


>gi|300112836|ref|YP_003759411.1| hypothetical protein Nwat_0111 [Nitrosococcus watsonii C-113]
 gi|299538773|gb|ADJ27090.1| protein of unknown function DUF558 [Nitrosococcus watsonii C-113]
          Length = 243

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + RL+    L I +          Y+  VLR++ G  + LF+G+  E+ + +  V K  
Sbjct: 2   RVPRLYFPLSLSIGSSVSLDERTLQYVIRVLRLRLGAQLRLFDGRGAEYQAVLEMVEKRA 61

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            R ++ E           +       +  R+DY +QK+VE+G+  I P++T  +      
Sbjct: 62  ARVRILERIEHYVESPLHIVLGQGISRGERMDYALQKAVELGVSHIVPLLTERSSVNFST 121

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 +   +   ISA EQC    +P +  P +L   L + DH    V  D    SE  
Sbjct: 122 GRAEKRLRHWQGVIISACEQCGRNYIPPVEIPRSLADFLGD-DHGGLAVLLD--PRSERP 178

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           L+ L  +     + +LIGPEGG +  E +      F+  + LGPRILR
Sbjct: 179 LKALP-LPLDNRLILLIGPEGGLNEIEIKQAQQADFI-GVRLGPRILR 224


>gi|315608164|ref|ZP_07883156.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250133|gb|EFU30130.1| RsmE family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 244

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 103/236 (43%), Gaps = 11/236 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK 68
            +V        Q +   ++  +   VLR+K GD + L +G    + ++++   GK   ++
Sbjct: 7   FYVPDAAR---QSELPEEEAGHALRVLRLKAGDEMFLMDGVGTFFRAEVTVAAGKHCMYE 63

Query: 69  VEYQ-SRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           ++ +  +  T +  +    +P K   R+++M++K+ E+G   I  +  ++++      DR
Sbjct: 64  IKDRFPQHPTWRGHIHLAIAPTKMMERMEWMVEKATEVGFDEISFLGCKFSERKVLRADR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAI- 184
           V    +SA +Q      P +    +    +         I    E    ++   ++    
Sbjct: 124 VEKIVVSAMKQSRKAWKPVVNTMCSFGEFMAVEHPGRKYICHCYEEFPKKDFFSEIQETI 183

Query: 185 --AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                 ++ +L+GPEG +  +E +      + + +SLG   LR++TA ++A+ +  
Sbjct: 184 DYEDNEDILVLVGPEGDFSVDEVQLALEKGYES-VSLGRSRLRTETAGLSAVMMAN 238


>gi|229220790|ref|YP_153918.2| hypothetical protein AM686 [Anaplasma marginale str. St. Maries]
          Length = 243

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 9   RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RL+     + +  +   +  Q HY+  V+R K GD +LLF+G  GEWL ++S + K  + 
Sbjct: 11  RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVE 70

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            + E   R   +   +   F+ +K   +  +++++ EMG+   +P+ T Y+     +  +
Sbjct: 71  VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRK 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R + + A+EQC    +P + P      L +  + + Q V  DET G +   E L     
Sbjct: 131 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 190

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              V +++GPEGG+ +EE  +     F   +SLG RIL+ DTA V A+A V 
Sbjct: 191 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 237


>gi|254995038|ref|ZP_05277228.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str.
           Mississippi]
          Length = 244

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 9   RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RL+     + +  +   +  Q HY+  V+R K GD +LLF+G  GEWL ++S + K  + 
Sbjct: 12  RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVE 71

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            + E   R   +   +   F+ +K   +  +++++ EMG+   +P+ T Y+     +  +
Sbjct: 72  VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRK 131

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R + + A+EQC    +P + P      L +  + + Q V  DET G +   E L     
Sbjct: 132 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 191

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              V +++GPEGG+ +EE  +     F   +SLG RIL+ DTA V A+A V 
Sbjct: 192 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 238


>gi|15675777|ref|NP_269951.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes M1
           GAS]
 gi|71911507|ref|YP_283057.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS5005]
 gi|13623001|gb|AAK34672.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71854289|gb|AAZ52312.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005]
          Length = 249

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLADEAEVVLVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPTEITQFEAASAIK-VGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|51891646|ref|YP_074337.1| hypothetical protein STH508 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855335|dbj|BAD39493.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 243

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 13/245 (5%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            R F++       +        H+L  VLR   G   ++ +G    +   +  V   +  
Sbjct: 3   PRFFLER--VEGDEVVLPRADSHHLLRVLRAGPGTPFVVLSG-GMAYDCVLHRVDDGLAR 59

Query: 68  --KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR------YTQN 119
                 +  +      +       K  +++ ++Q   E+G+     V           + 
Sbjct: 60  GRIRAAEPAAGEPAIRITLFQGLAKGEKMELVLQHGTELGIAEFVAVAAARSVVRLDERK 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R +     AAEQ     +P + PP T +  +         + A E  G E    
Sbjct: 120 AAQRTERWQRIAREAAEQSRRGAVPTVAPPHTWKEAVARIPEFDLALVAWE-GGGEPLRA 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L A     ++A+ IGPEGG  +EE E       V P++LGPRILR++TA +AA+A +  
Sbjct: 179 ALEARPEARDIAVFIGPEGGLTAEEVELARQAGAV-PVTLGPRILRTETAPLAAVAAILY 237

Query: 240 ICGDW 244
             G+W
Sbjct: 238 ARGEW 242


>gi|229586410|ref|YP_002844911.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia africae ESF-5]
 gi|228021460|gb|ACP53168.1| Unknown [Rickettsia africae ESF-5]
          Length = 246

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFNG DGE+L++I+
Sbjct: 1   MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56

Query: 60  YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            +GK   S+R K   Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+
Sbjct: 57  DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q    N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ +     ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 173 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|167847329|ref|ZP_02472837.1| hypothetical protein BpseB_18782 [Burkholderia pseudomallei B7210]
          Length = 233

 Score =  205 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 17/221 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVVPLSTARGVVRLS 135

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGALRLLLSPRA 195

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212
                    L A     +V +LIGPEGG   +E++   +  
Sbjct: 196 SV---PFASLPAAPPAGDVTLLIGPEGGLAPDEEQAARARG 233


>gi|94995181|ref|YP_603279.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS10750]
 gi|94548689|gb|ABF38735.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750]
          Length = 249

 Score =  205 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLADEAEVILVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E          +V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVEVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I    E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNRVPEVHLFEHKAEFLKSLSSFDHIFIGYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   V  + LGPRI+R++TA + A++ 
Sbjct: 180 LAREVKEVKPGAKILFIFGPEGGISPAEITQFEAAG-VIKVGLGPRIMRAETAPLYALSA 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|241668207|ref|ZP_04755785.1| 16S rRNA m3U1498 methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876742|ref|ZP_05249452.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842763|gb|EET21177.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 241

 Score =  205 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 15/240 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVG-KSIRF 67
            F D      T+   SG+ Y+Y  +VLR+K+ D I LFN  DG  + ++I  +  KSI  
Sbjct: 7   FFADIS-VKTTELSISGEYYNYFKNVLRLKKSDFIELFNNNDGFQYKTQIIDINNKSILL 65

Query: 68  KVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT 120
           +V  +     +    V    + IK    ++++QK+ E+G+  I P+IT YT         
Sbjct: 66  EVIEKKEIHNENKYIVNIYQAIIKNENFEFIVQKATELGVNNIYPIITEYTNHKFDKKGF 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R     I+AAEQC  + +P I+ P  +   +   + +  I     +   EN    
Sbjct: 126 DKKLERWNKIAIAAAEQCGRVFIPKIHYPIEINS-IHLSNSHINIALCPYSNTPENFENL 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +          I IGPEGG+ ++E E   +  F T ++LG RIL+++TA +  +A++  +
Sbjct: 185 IKTHDKFN---IFIGPEGGFSNKEMELFKTKDFNT-INLGKRILKAETAPINILAIINFV 240


>gi|19746890|ref|NP_608026.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus pyogenes
           MGAS8232]
 gi|19749135|gb|AAL98525.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 249

 Score =  205 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 92/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+      K       D   ++  V+R+ +   ++L      ++L+K++       
Sbjct: 1   MQQYFIKGKAEKKVTIT-DKDTIKHMFQVMRLADKAEVVLVFDDGVKYLAKVTNSMAHEL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E           V       K ++LD + QK  E+G  A+        V+    +  
Sbjct: 60  EIIEALPDQVELPVKVTIASGFPKGDKLDTIAQKVTELGASALWGYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D++    + AAEQ     +P ++        LK+      I  A E       L  
Sbjct: 120 AKKEDKLAKIVLGAAEQSKRNVVPEVHLFEQKAEFLKSLSSFDHIFIAYEETAKAGQLAT 179

Query: 181 L----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L      +     +  + GPEGG    E     +   +  + LGPRI+R++TA + A+++
Sbjct: 180 LAREVKEVKLGAKILFIFGPEGGISPTEITQFEAAGAIK-VGLGPRIMRAETAPLYALSV 238

Query: 237 VQAIC 241
           +    
Sbjct: 239 LSYAL 243


>gi|15619261|gb|AAL02748.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 257

 Score =  205 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFNG DGE+L++I+
Sbjct: 14  MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 69

Query: 60  YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            +GK   S+R K   Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+
Sbjct: 70  DIGKNNLSVRLKE--QLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 127

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q    N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 128 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 185

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ +     ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 186 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 234


>gi|282850175|ref|ZP_06259554.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745]
 gi|282579668|gb|EFB85072.1| RNA methyltransferase, RsmE family [Veillonella parvula ATCC 17745]
          Length = 243

 Score =  205 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R      I +   + + G +       GK 
Sbjct: 1   MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQITAEVDGK- 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            + K+               + S +K  +L++++QK+ E+ +  I  V T         +
Sbjct: 58  AQAKLIEYVEGNLASYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVPTANCVAKYDEK 117

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R     + AA+QC    LP +    TL   L       ++V  +   G   ++
Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRNHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ LH+   + +V I IGPEGGY  +E   +        +SLG  ILR++TAA+ ++A+
Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIGSLAM 236

Query: 237 VQAIC 241
           ++   
Sbjct: 237 IRYEL 241


>gi|34580836|ref|ZP_00142316.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262221|gb|EAA25725.1| unknown [Rickettsia sibirica 246]
          Length = 244

 Score =  205 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFNG DGE+L++I+
Sbjct: 1   MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56

Query: 60  YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            +GK   S+R K   Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+
Sbjct: 57  DIGKNNLSVRLKE--QLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q    N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ +     ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 173 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|222475209|ref|YP_002563625.1| hypothetical protein AMF_516 [Anaplasma marginale str. Florida]
 gi|56388076|gb|AAV86663.1| hypothetical protein AM686 [Anaplasma marginale str. St. Maries]
 gi|222419346|gb|ACM49369.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 260

 Score =  205 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 9   RLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           RL+     + +  +   +  Q HY+  V+R K GD +LLF+G  GEWL ++S + K  + 
Sbjct: 28  RLYHKEGGIGVGGRVALNATQAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVE 87

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
            + E   R   +   +   F+ +K   +  +++++ EMG+   +P+ T Y+     +  +
Sbjct: 88  VEAEKLLRKHVRTRTLVLCFALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRK 147

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R + + A+EQC    +P + P      L +  + + Q V  DET G +   E L     
Sbjct: 148 CRLWAVEASEQCGRQDVPEVAPVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE 207

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              V +++GPEGG+ +EE  +     F   +SLG RIL+ DTA V A+A V 
Sbjct: 208 ---VWVIVGPEGGFSNEELCSCED--FCDKMSLGSRILKVDTAVVCALAYVN 254


>gi|302346384|ref|YP_003814682.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC
           25845]
 gi|302150957|gb|ADK97218.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica ATCC
           25845]
          Length = 244

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 105/238 (44%), Gaps = 11/238 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F      ++T+     ++  +   VLR+KEGD + L +G+   + ++++ V       
Sbjct: 5   RYFYVPNAAVETE--LPAEEAVHAIRVLRLKEGDEMFLMDGEGCFYKAEVALVSSKKCLY 62

Query: 69  VEYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
              ++  Q       +    +P K   R+++M +K+ E+G   I  +  ++++     +D
Sbjct: 63  TIKETLKQEPVWRGKIHLAIAPTKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRVD 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEK 180
           R+    ISA +Q      P + P T     ++N  +N +                 ++ +
Sbjct: 123 RIEKIVISAVKQSRKGWKPVVNPMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQ 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               +   ++ +L+GPEG +  +E        F + ++LG   LR++TA ++A+ + Q
Sbjct: 183 EEQPSSAEDITVLVGPEGDFSIDEVSFALEHGFES-VTLGNSRLRTETAGLSAVMMSQ 239


>gi|253752746|ref|YP_003025887.1| hypothetical protein SSUSC84_1911 [Streptococcus suis SC84]
 gi|253754571|ref|YP_003027712.1| hypothetical protein SSU1893 [Streptococcus suis P1/7]
 gi|253756504|ref|YP_003029644.1| hypothetical protein SSUBM407_1958 [Streptococcus suis BM407]
 gi|251817035|emb|CAZ52687.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251818968|emb|CAZ56815.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251820817|emb|CAR47583.1| conserved hypothetical protein [Streptococcus suis P1/7]
 gi|319759164|gb|ADV71106.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus suis JS14]
          Length = 248

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+          +  D   ++  V+R++ GD I+L      + L+++        
Sbjct: 1   MQQYFVNGRAPQGMFQISDKDTAKHMFSVMRLQAGDQIVLVFDDGIKRLARVVDSQSQSV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E  + +      V       K ++L+++ QK+ E+GM A+        V+    +  
Sbjct: 61  EIIEELTDNVELPISVTIAMGFPKGDKLEFVAQKATELGMSALWAFPADWSVVKWDGKKL 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----N 176
               +++      AAEQ     +P +         L       QI+ A E    E    N
Sbjct: 121 AKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKSDFLAQLAGFDQIILAYEEAAKEGEQAN 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ L  +    +V +++GPEGG   EE         V    LGPRILR++TA + A++ 
Sbjct: 181 LVKILSGLEIGQSVLVIVGPEGGVSPEEVAAFEGAGAVKT-GLGPRILRAETAPLYALST 239

Query: 237 VQAIC 241
           +    
Sbjct: 240 ISYAT 244


>gi|110598135|ref|ZP_01386413.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340267|gb|EAT58764.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 247

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 15/229 (6%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79
           +     D++H+LA VLR ++G  IL+ +G      ++IS VGK S+  ++         +
Sbjct: 17  RIVIDSDEFHHLARVLRKQKGAVILVTDGNGIRCEARISEVGKSSLEAEILDHRLVGEPK 76

Query: 80  SDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
           + V    S +K   R ++ ++K+ E+G+ +I P+IT  T      +     + R +T  +
Sbjct: 77  TGVTVALSMLKNPQRFEWFLEKATELGVSSIIPMITARTLAQPSKERVQGRLKRWKTIVL 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           SAA Q     LP +  P T   +     ++ +++   E       +E             
Sbjct: 137 SAARQSKRYHLPALSEPLTFAQVSALEGYDLRLIP-YEASEEAPKVEF-----AGKKALF 190

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +IG EGG+   E E   +  F   +SLG  ILR++TA + A+ALV+   
Sbjct: 191 MIGGEGGFTDSEVEKAKTAGFCE-ISLGRTILRAETAGIFAVALVRTRL 238


>gi|297736409|emb|CBI25132.3| unnamed protein product [Vitis vinifera]
          Length = 410

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R F +  P       +  GD++ ++  VLR+   D + LFNGK G     I+ + ++ 
Sbjct: 165 LPRFFSEVLPPSKGGIVRVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTG 224

Query: 66  RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120
              +  +       Q+ +  V   F  +K  R D++++K  E+G  ++ P++T  + + +
Sbjct: 225 LDFIALEDPKLVLPQSSRWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSIS 284

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR++   ++AA+QC  L    + PPTT++ LL     +   + A     +      
Sbjct: 285 ENRVDRLQRVILAAAKQCQRLHEMTLNPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSV 342

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L +        ++IGPEG +  +E   +      T + LGP  LR +TA +A +A +  +
Sbjct: 343 LTSSRRESTGLMIIGPEGDFTEKELNMMREAG-ATAVGLGPHRLRVETATIALLATLM-L 400

Query: 241 CGD 243
             D
Sbjct: 401 WSD 403


>gi|291515586|emb|CBK64796.1| RNA methyltransferase, RsmE family [Alistipes shahii WAL 8301]
          Length = 237

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 102/240 (42%), Gaps = 7/240 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +   P  +      + ++  +   VLR++ G  I + +G+   +  +I+    +  
Sbjct: 1   MQLFY--APDIVPPLHTLNEEESKHCIRVLRLQCGGRIHITDGRGNLFCCEITDDNPRRC 58

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             +V   ++  +     +    +P K   R ++ ++K+ E+G+ A+ P+ T +++   + 
Sbjct: 59  TVRVVSAETGFEKLPYALTMAVAPTKNSERFEWFLEKATEVGVTAVVPLETEHSERRVFK 118

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL-H 182
            +R      +A +Q      P ++P T     + +     + +       S      L  
Sbjct: 119 PERGEKVVTAALKQSLKAYRPVLHPLTPFREAVLSAPEGRKFIAHCAPAQSPAGKAYLAR 178

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           A+       + IGPEG +   E     +  F   ++LG + LR++TAA+AA+ +   + G
Sbjct: 179 ALRPGETATVFIGPEGDFSPGEIAFALANGFEE-ITLGRQRLRTETAALAAVVMASVVNG 237


>gi|327314423|ref|YP_004329860.1| RsmE family RNA methyltransferase [Prevotella denticola F0289]
 gi|326944161|gb|AEA20046.1| RNA methyltransferase, RsmE family [Prevotella denticola F0289]
          Length = 259

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 27/252 (10%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK 68
            +V     +    +   ++  +   VLR+KEGD + L +G+   + +++     K   + 
Sbjct: 7   FYVPNAAALN---ELPAEEAVHALRVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYT 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +    R        +    +P K   R+++M +K+ E+G   I  +  R+++      DR
Sbjct: 64  IRQTMRQKPAWSGRIHLAIAPTKDMGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------------- 173
           +    +SA +Q      P + P ++    ++N     +                      
Sbjct: 124 IEKIVVSAVKQSRKGWKPLVNPMSSFSSFVENCPDKGRKFICHCYPEIPRTDFFTAITSA 183

Query: 174 ------SENSLEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                  +N LE          ++ +LIGPEG +  EE     +  F + ++LG   LR+
Sbjct: 184 LQPGIFLQNGLEAQKEHPSGAADITVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRT 242

Query: 227 DTAAVAAMALVQ 238
           +TA ++A+ + Q
Sbjct: 243 ETAGLSAVMMSQ 254


>gi|254415665|ref|ZP_05029424.1| conserved hypothetical protein TIGR00046, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177615|gb|EDX72620.1| conserved hypothetical protein TIGR00046, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 295

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 107/284 (37%), Gaps = 50/284 (17%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +L+RL +        Q   +  Q HYL  VLR+ EGD  +  +G+   WLS++     + 
Sbjct: 9   NLQRLVISPTQRQNQQILLTESQQHYLVRVLRLTEGDRFIAMDGEGNWWLSEL-MANLTQ 67

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYN 123
              +E           +  I +  K +  + +I  + E+G+  I P+ +  T    +   
Sbjct: 68  ATIIESIPIQTELPCAITLIAAMPKGSGFEDIISAATELGVTDIIPIKSDRTILNPSPRK 127

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS----ENSLE 179
           ++R R     AAEQ +   +P I  P      +K    +    +     G+     N L 
Sbjct: 128 LERWRRIAQEAAEQSERQIVPTIIDPLDFTSAIKQAIDSTTHCYICVARGNVPHLLNCLP 187

Query: 180 KLHAIAHIPN------------------------------------------VAILIGPE 197
           KL  I                                               +AI  GPE
Sbjct: 188 KLEVIDPGDGQDKGDEGGFSTIRVTTNDNSETRPYIQNPVPDERSEGSKRSIIAIATGPE 247

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG+  +E E   +  F  P+SLG RILR+ TA + A++L+ A  
Sbjct: 248 GGWTPQEIEQAIAAGF-QPVSLGHRILRAVTAPLMALSLIAASL 290


>gi|115455113|ref|NP_001051157.1| Os03g0729700 [Oryza sativa Japonica Group]
 gi|113549628|dbj|BAF13071.1| Os03g0729700 [Oryza sativa Japonica Group]
          Length = 330

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 10/248 (4%)

Query: 2   KIHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +    L R      P     + +  GD++ ++  VLR+   D + LF+G  G     I  
Sbjct: 77  RARGGLPRFHSPTLPSSKGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQK 136

Query: 61  VGKSIR-FKVEYQSRSQTK---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
           V K     K+   +R       Q  V   F  +K  R D++++K  E+G  ++ P++T  
Sbjct: 137 VDKGGSDVKLLEDARLIAPDGIQWHVYAAFGTLKGGRADWLVEKCTELGACSVTPLLTER 196

Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +DR++   ++A +QC  +    + PP  +  L      +     A  +  S 
Sbjct: 197 CHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVVSQSKLAFVA--SAESP 254

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L  L    +  +  +++GPEG +  EE   L +   V P+ LGP  LR +TA ++ ++
Sbjct: 255 PLLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAV-PVGLGPCRLRVETATISLLS 313

Query: 236 LVQAICGD 243
            +  +  D
Sbjct: 314 ALM-LWSD 320


>gi|229301334|ref|NP_359847.2| hypothetical protein RC0210 [Rickettsia conorii str. Malish 7]
 gi|39932538|sp|Q92J59|RSME_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
          Length = 244

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFNG DGE+L++I+
Sbjct: 1   MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQIN 56

Query: 60  YVGK---SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
            +GK   S+R K   Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+
Sbjct: 57  DIGKNNLSVRLKE--QLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRW 114

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            Q    N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 115 CQFRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEEN 172

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ +     ++ I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 173 SILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNILR 221


>gi|329296976|ref|ZP_08254312.1| hypothetical protein Pstas_11162 [Plautia stali symbiont]
          Length = 209

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 14/213 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L + ++     D  +++  VLRM  G  I LF+G +  + ++I+   K  
Sbjct: 2   RIPRIYHPEALMVNSEILLDEDAANHVDRVLRMSAGQQIELFDGSNLTFSAQITQADKKR 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                  S+   ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 62  VKVKVLASQPDDRKSPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLFSERCGVKLDA 121

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +     + + +   I+A EQC    +P I    TLE      D   ++        S N+
Sbjct: 122 ERLAKKIQQRQKIAIAACEQCGRNRVPEIRAAMTLEAWCAEADDGLKLNLHPRASHSINT 181

Query: 178 LEKLHAIAHIPNVAILI-GPEGGYHSEEKETLH 209
           L +      +  V +LI  PEGG  +EE     
Sbjct: 182 LPQ-----PVKRVRLLIDDPEGGLSAEEITMTA 209


>gi|225867798|ref|YP_002743746.1| hypothetical protein SZO_01840 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701074|emb|CAW97892.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 248

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ F+      +   + +  D   ++  V+R+ + + ++L      + L+++S      
Sbjct: 1   MQQYFIKG--RAEKIVQLTDKDTIKHMFQVMRLTDQEKLVLVFEDGIKRLARVSDSSAYE 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              ++    +     +V       K ++LD + QK+ E+G  AI        V+   ++ 
Sbjct: 59  VELIKELEENVEMPVEVTIASGFPKGDKLDVITQKTTELGAAAIWGFPADWSVVKWDSKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                +++    + AAEQ     +P I        LLK      +   A E         
Sbjct: 119 LAKKQEKLAKIALGAAEQSKRNRVPEIKLFDQKGELLKQLKQFDKCFVAYEEAAKAGERS 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +L  ++    V  + GPEGG  S+E  +      +T + LGPRI+R++TA + A++
Sbjct: 179 TLARELAGLSPGQKVLFIFGPEGGISSKELASFKQAGAIT-VGLGPRIMRTETAPLYALS 237

Query: 236 LVQAIC 241
            V    
Sbjct: 238 AVSYAL 243


>gi|189424061|ref|YP_001951238.1| 16S ribosomal RNA methyltransferase RsmE [Geobacter lovleyi SZ]
 gi|189420320|gb|ACD94718.1| protein of unknown function DUF558 [Geobacter lovleyi SZ]
          Length = 249

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 12/246 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--- 64
           +R  V             G Q+H++A VLR++ GD ++L + +    L  I  V +    
Sbjct: 5   RRFIVSSRSIRDGYASYDGPQHHHMARVLRLRSGDEVMLIDEQGRRHLGVIDQVTQEWTA 64

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +R     ++        +  I    K  +++ ++QK  E+G+          +       
Sbjct: 65  VRLTETLEASQFPDAPAITVIQGLPKGEKIELVLQKGTELGVSEFSIFRADRSVPKLAGD 124

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                ++R       AA Q +    P + + P+         +   +++  +    +   
Sbjct: 125 KLQGRIERWNRIVAEAARQSERFDQPTVAWHPSAAAAAAGAANAELKLLLWERGAPT-PL 183

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E L  +     +AI IGPEGG+   E E      F TP++LG RILR++TAA+A  A+V
Sbjct: 184 REVLEGMPRPARIAIAIGPEGGFEPGEAEAFSFWGF-TPVTLGERILRTETAALAMTAIV 242

Query: 238 QAICGD 243
           Q   GD
Sbjct: 243 QYKWGD 248


>gi|148652720|ref|YP_001279813.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter sp. PRwf-1]
 gi|148571804|gb|ABQ93863.1| protein of unknown function DUF558 [Psychrobacter sp. PRwf-1]
          Length = 300

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 61/294 (20%)

Query: 7   LKRLFVDFPLC------------IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEW 54
           ++R F +  L             +    + + D YH+   VLR K G+   +F+G  G+ 
Sbjct: 1   MRRFFYNSSLHHTASIEALHQRPLGDSLRLTDDIYHHWCRVLRAKVGEQSWIFDGLGGQS 60

Query: 55  LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPV 112
           L ++  + K           +     +     + +  + +R+DY IQK+ E+G   I+ +
Sbjct: 61  LVELESIDKKSATVKIIHQDTAENTCNYHSTIALVMSRGDRMDYAIQKATELGATTIQLL 120

Query: 113 ITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-------- 158
            +++ +           +   +   +SA+EQC +     I  P ++E  L+         
Sbjct: 121 TSQHGEVRLKANQVDKKLSHWQQVALSASEQCRLNRPTLILSPLSIEQWLQGEMGAVHHM 180

Query: 159 ----WDHN----------CQIVFADETCGSENSLEKLHAI------------------AH 186
               +D +            +V A  +   + +L+    I                  A 
Sbjct: 181 VQHLYDADYYQSYLQQPILPLVLAVPSQQEQQTLDVNAQITGHFASANIKGANPDSTAAC 240

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           +P   ILIG EGG    E +   +  ++ P  LG R+LR++TA V A+A +  I
Sbjct: 241 LPRFDILIGAEGGLSEAEYQLARNTGYL-PWQLGNRVLRTETAPVVALATLMYI 293


>gi|269797946|ref|YP_003311846.1| hypothetical protein Vpar_0885 [Veillonella parvula DSM 2008]
 gi|269094575|gb|ACZ24566.1| protein of unknown function DUF558 [Veillonella parvula DSM 2008]
          Length = 243

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R      I +   + + G +       GK+
Sbjct: 1   MKKIFIPTPL--DEIIELPKDVTHHVLHVFRHNMEKPITVTGSDNRCGIYQITAEVDGKA 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               +EY   +      +  + S +K  +L++++QK+ E+ +  I  V     + +Y + 
Sbjct: 59  QAKLIEYVEENVASYRTI-LVQSLLKGEKLEWVLQKATELNVDTIYLVPTVNCVAKYDEK 117

Query: 120 T-HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                ++R     + AA+QC    LP +    TL   L       ++V  +   G   ++
Sbjct: 118 KLQSKVNRWEKIMLEAAQQCGRKHLPTLVVGETLLQALDIESEALKLVAYENEAGQTIKD 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L+ LH+   + +V I IGPEGGY  +E   +        +SLG  ILR++TAA+ ++A+
Sbjct: 178 VLKTLHSDKSVTDVLICIGPEGGYQEKEINAIIKYGG-KSVSLGNTILRAETAAIGSLAM 236

Query: 237 VQAIC 241
           +Q   
Sbjct: 237 IQYEL 241


>gi|317504916|ref|ZP_07962867.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315663966|gb|EFV03682.1| RsmE family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 240

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 101/236 (42%), Gaps = 8/236 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +V              ++  +   VLR++ GDN++L +GK   + + ++    K   ++
Sbjct: 7   FYVPNAATNNQ---LPEEEAGHALRVLRLQSGDNMVLMDGKGTFYHAIVTLASHKKCLYE 63

Query: 69  V-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           + E   + +T  S +    +P K  +R++++ +K  E+G   +  +   +++      DR
Sbjct: 64  IQETLPQEKTWSSQIHLAIAPTKNIDRIEWLAEKVTEIGFDELSFLHCTFSERKMLRQDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-IVFADETCGSENSLEKLHAIA 185
           +    +SAA+Q     +P +    + +  +       + I         ++  + +    
Sbjct: 124 IEKIVVSAAKQSRKAWMPKVNALESFKEFITTPREGRKFIAHCYTEIEKKDFFDAITNDD 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
               + +L+GPEG +  +E        + + ++LG   LR++TA + A+ + Q   
Sbjct: 184 LATPITVLVGPEGDFSIDEVRLAMEQGYES-ITLGKSRLRTETAGLMAVTMAQIAL 238


>gi|281420413|ref|ZP_06251412.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205]
 gi|281405558|gb|EFB36238.1| RNA methyltransferase, RsmE family [Prevotella copri DSM 18205]
          Length = 251

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 103/241 (42%), Gaps = 18/241 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRF 67
           R F        TQ +   ++  +   VLR++ GD + L +GK   + +++S    K   +
Sbjct: 5   RFFYVPDAA--TQTELPQEEATHALRVLRIQTGDELFLMDGKGVFYRAEVSLATNKRCIY 62

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
           +V E   +    +  +    +P K  +R+++M +K+ E+G   I  +  ++++     +D
Sbjct: 63  EVKEVMPQQPAWRGHIHLAIAPTKMMDRIEWMAEKATEIGFDEISFLNCKFSERKVIRID 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLEKLH-- 182
           R+    +SA +Q      P +      +  +    +  + +    E    ++   ++   
Sbjct: 123 RIDKIVVSAVKQSHKAWKPVVNELQNFKDFITAPRNGRKFICHCYEEIEKKDFFAEISKS 182

Query: 183 ---------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                    A     ++ +L+GPEG +  +E        + + +SLG   LR++TA + A
Sbjct: 183 CPADDSAGAAQEGTDDITVLVGPEGDFSIDEVRLALENGYES-VSLGTSRLRTETAGLVA 241

Query: 234 M 234
           +
Sbjct: 242 V 242


>gi|22299289|ref|NP_682536.1| hypothetical protein tlr1746 [Thermosynechococcus elongatus BP-1]
 gi|22295472|dbj|BAC09298.1| tlr1746 [Thermosynechococcus elongatus BP-1]
          Length = 270

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 10/233 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +RL V     +      + +Q HYL HVLR+K GD + + +G+   WL +I   GK+++ 
Sbjct: 33  QRLIVQGRQILDQCVTLTAEQQHYLYHVLRLKVGDELWILDGQGQRWLGQIQ--GKTVKL 90

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD 125
            +    R     +++    + +K    + ++Q++ E+G+  I P+ T  +  Q +     
Sbjct: 91  -LRPDCRETELSTEIILCLALLKAANFEQVLQQATELGVKRIVPIQTARSLLQPSINKYQ 149

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R +     AAEQ + L +P +  P ++  ++           A      E   + L  + 
Sbjct: 150 RWQRILQEAAEQSERLYVPALSDPLSVAEMVSLTPKGYIASLA----APELLWDCLPQMN 205

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               + + IGPEGG+ + E E + +  +   +SLG R LR+ TAA+A++++V 
Sbjct: 206 LSEPIYLAIGPEGGWTASELEQVLAAGW-QAVSLGRRTLRAVTAAIASLSVVS 257


>gi|319940233|ref|ZP_08014585.1| YqeU [Streptococcus anginosus 1_2_62CV]
 gi|319810535|gb|EFW06871.1| YqeU [Streptococcus anginosus 1_2_62CV]
          Length = 246

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 24/251 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+             D   ++  V+R+ E D ++L      + L+++S   + + 
Sbjct: 1   MQQYFVNG-QVENPVIIRDKDTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             VE    +      V       K ++L+++ QK+ E+G  AI    + ++      + +
Sbjct: 60  NLVEELPDNAELPIHVTVASGFPKGDKLEWVAQKTTELGAAAIWAFPSDWS------VAK 113

Query: 127 V------------RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
                            + AAEQ     +P +         L        ++ A E    
Sbjct: 114 WDGKKLAKKADKLEKIVLGAAEQSKRNLIPEVRLFEKKVDFLDCLSQFDCVIVAYEESAK 173

Query: 175 EN----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           E      ++ +  +     +  + GPEGG    E  TL     +    LGPRILR++TA 
Sbjct: 174 EGESAALVKAVTGLKKGSRILFVFGPEGGLSPAEIATLEEAGAILA-GLGPRILRTETAP 232

Query: 231 VAAMALVQAIC 241
           + A++ V  + 
Sbjct: 233 LYALSAVSVLT 243


>gi|296269135|ref|YP_003651767.1| hypothetical protein Tbis_1152 [Thermobispora bispora DSM 43833]
 gi|296091922|gb|ADG87874.1| protein of unknown function DUF558 [Thermobispora bispora DSM
           43833]
          Length = 246

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 8/242 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFK 68
              D     +     SG + H+ A V R++ G+ + + +G        ++  GK +   +
Sbjct: 6   FLSDAAGSAEDHIVLSGPEGHHAATVRRLRPGERVDITDGAGRVAECVVAETGKDVLTAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V  +  ++  +  +  + +  K +R +  ++   E G+  I P                 
Sbjct: 66  VLRRFHAEPPRPRLIVVQALAKGDRGELAVEMMTEAGVDVIVPWAASRCVVQWKGDRAAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R R+    AA+Q     LP +    +   + +        V   E      S     
Sbjct: 126 ALARWRSTAREAAKQSRRFHLPEVTEQASTAQVAELISGAELAVVLHEEAERPLSGITPP 185

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
                 ++ +++GPEGG   EE   L     V P  LGP +LR+ TA VAA A++ A CG
Sbjct: 186 RGPSAGDIVVVVGPEGGITEEELARLSEAGAV-PALLGPTVLRTSTAGVAAAAVLFARCG 244

Query: 243 DW 244
            W
Sbjct: 245 RW 246


>gi|68171492|ref|ZP_00544876.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658073|ref|YP_507353.1| hypothetical protein ECH_0540 [Ehrlichia chaffeensis str. Arkansas]
 gi|67999098|gb|EAM85765.1| Conserved hypothetical protein 46 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599530|gb|ABD44999.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 241

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+VD  L   +         HY+ HV+R  + D + LFNG+DGEW+ +I  +  + + +
Sbjct: 11  RLYVDCTLSKSSIVILDNIASHYICHVMRAAKLDEVKLFNGRDGEWIGEIFELSSNTKIR 70

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V    R Q     +    S +K   L  +I+++ EMG+  I+P+ T++   ++ N+ + +
Sbjct: 71  VNELIRRQYVPKSLTLCLSIVKNTALQNVIRQATEMGVTFIQPIYTQHIATSNINLSKCK 130

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + I AAEQC  L +P I  P     L +    +   V  DET       E L       
Sbjct: 131 KWAIEAAEQCGRLDIPDISFPIDFIDLKQLKTDDNNFVICDETGKGHPPSEVL---KGKN 187

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           NV I+IGPEGG+ ++E        F   LSLG  ILR DTA V+A+A V+   G
Sbjct: 188 NVHIIIGPEGGFSNDELSFA--YSFCDGLSLGTTILRVDTAVVSALAYVKEYYG 239


>gi|313893412|ref|ZP_07826984.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442053|gb|EFR60473.1| RNA methyltransferase, RsmE family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 243

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R      I +   + + G +      V   
Sbjct: 1   MKKIFIPTPL--DEIIQLPKDVTHHVLHVFRHNMEKPITVTGSDNRCGIYQIT-EEVDGL 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            + K+     S         + S +K  +L++++QK+ E+ +  I  V T         +
Sbjct: 58  AQAKLIEYVESDASSYRTILVQSLLKGEKLEWVLQKATELNVDTIYLVSTANCVAKYDDK 117

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                + R     + AA+QC    LP +     L  +L   D   ++V  +   G   + 
Sbjct: 118 KLQSKVSRWEKIMLEAAQQCGRNQLPTLVVGEKLSQVLAIEDDAFKLVAYENEEGHTIKI 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +LE +H+  +I ++ I IGPEGGY  +E   +        +SLG  ILR++TAA+ ++A+
Sbjct: 178 ALESIHSNQNITDILICIGPEGGYQEKEINAIIESGG-KSVSLGNTILRAETAAIGSLAM 236

Query: 237 VQAIC 241
           +Q   
Sbjct: 237 IQYEL 241


>gi|116492884|ref|YP_804619.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745]
 gi|116103034|gb|ABJ68177.1| hypothetical protein PEPE_1122 [Pediococcus pentosaceus ATCC 25745]
          Length = 245

 Score =  204 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 19/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV  PL I+ + + S +  H+L  V+R   G ++ + +     +++++   G    
Sbjct: 1   MQRYFVKQPLKIQAELQLSKEDSHHLIRVMRTDIGQDVEVVDLDGKVFIAEVLKSGSIAT 60

Query: 67  FKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------N 119
            +  E  ++S     D+       K ++ + +I++  EMG        +RY+        
Sbjct: 61  LRTKEDITKSVELPVDITIACGISKGDKNEQIIKRGTEMGAKHFIFFESRYSVARWSEPK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLP---FIYPPTTLEFLLKNWDHNCQIVFADETC---G 173
               + R+R     AAEQ     +P   FI  P   E  +++     ++V  +E+     
Sbjct: 121 VEKKLKRLREIAKGAAEQSHRQLIPTVVFIKAPALFETTIEH-----RMVAYEESAKQDE 175

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             N    L  +     +  + GPEGG+  EE +      FV    LGPRILR++TA +  
Sbjct: 176 HANFKSLLLQLKAGDQLLAVFGPEGGFAEEEIQEFTEHQFVLA-GLGPRILRAETAPMYL 234

Query: 234 MALVQAIC 241
           ++ V    
Sbjct: 235 LSAVSYQF 242


>gi|326693043|ref|ZP_08230048.1| hypothetical protein LargK3_04782 [Leuconostoc argentinum KCTC
           3773]
          Length = 245

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P+       A  D + +   VLR + G      +      + ++  +  +  
Sbjct: 1   MQRYFLKQPIADDLVLTADQDVFKHFGKVLRARVGSQAEFVSQDQEVVVGEVVAITPTEM 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               V   + +      V  I SP+K +R D+ +QK+ E+G+  I        +  + + 
Sbjct: 61  TLKVVSRLTENVELPVQVTVIVSPLKNDRSDWFVQKATELGVHRIIFTTMTRTVADWRKQ 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                 R+     +AAEQ   L +P I    +   +L +      IV  +E+        
Sbjct: 121 QLKKATRLEKIAQAAAEQSHRLMIPTID-FLSWSEVL-SLPKQAGIVAWEESAREGEVGT 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +  +     +A++ GPEGG  ++E   L    F  P  LGPRILR++TA + A++ 
Sbjct: 179 LVQVVKPLPTGAELALVFGPEGGLTADEVAALSEHGF-KPAGLGPRILRAETAPLYALSA 237

Query: 237 VQAI 240
           +  +
Sbjct: 238 ISVL 241


>gi|310779511|ref|YP_003967844.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926]
 gi|309748834|gb|ADO83496.1| protein of unknown function DUF558 [Ilyobacter polytropus DSM 2926]
          Length = 237

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 104/231 (45%), Gaps = 7/231 (3%)

Query: 11  FVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           FV+     +   K +     ++L +V RMKEGD + + +G+  E+   I  + K      
Sbjct: 5   FVEKENISENIIKITEKADVNHLKNVFRMKEGDQLRVVDGE-YEYFCTIVILEKKEITAE 63

Query: 70  EYQSRSQTKQSDVQY--IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDR 126
               +S    S ++       +K +++D +IQK  E+G+  I P +T+ T         +
Sbjct: 64  INDKKSDEYSSKIRIDAALGILKNDKMDLVIQKLTEIGINKIIPTLTKRTIVKLKGKKSK 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
             T +  A +QC  + L  I  P  L   ++  D++  ++  +    +       ++   
Sbjct: 124 WDTVSKEALKQCQGVKLVEISEPLKLSE-IEYSDYDLVLLPYECAENTRIKDVLNNSEKT 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  +  LIGPEGG+  EE   L        ++LG RILR++TAA+    ++
Sbjct: 183 LKKILYLIGPEGGFSEEEVAYLQENN-AKVITLGKRILRAETAAIVVGGVL 232


>gi|89256081|ref|YP_513443.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica LVS]
 gi|115314557|ref|YP_763280.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica OSU18]
 gi|169656563|ref|YP_001428163.2| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290954533|ref|ZP_06559154.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312049|ref|ZP_06802864.1| 16S ribosomal RNA methyltransferase RsmE [Francisella tularensis
           subsp. holarctica URFT1]
 gi|89143912|emb|CAJ79131.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129456|gb|ABI82643.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|164551631|gb|ABU61207.2| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 242

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIR 66
            F D  +  KT     SG+ Y+Y  ++LR+K+ D I LFN  D  ++ +KI  +  K+I 
Sbjct: 7   FFSD--ISTKTTIFNISGEYYNYFKNMLRLKKSDLIELFNNTDSLQYKTKIITIDNKNIT 64

Query: 67  FKVEYQSRSQTKQSDVQ-YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            +V  +     + + +     + IK+   + +IQK+ ++G+  I P+IT +T +      
Sbjct: 65  LEVIDKKHISNENNYITNLYQAIIKSENFELVIQKATKLGVNNIYPIITEFTNHKFDKNG 124

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     I+ +EQC  + +P I+ P  +   L+   ++  +V    T   ++ ++
Sbjct: 125 FDKKLERWHKIAIAGSEQCGRVFIPKIHTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQ 183

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           K+ +  +     I IGPEGG+  +E    HS  F T ++LG RIL+++TA +  ++++  
Sbjct: 184 KVKSSTNFN---IFIGPEGGFSDKEMSKFHSNNFYT-INLGKRILKAETAPINILSIINF 239

Query: 240 I 240
           +
Sbjct: 240 L 240


>gi|73667112|ref|YP_303128.1| hypothetical protein Ecaj_0493 [Ehrlichia canis str. Jake]
 gi|72394253|gb|AAZ68530.1| Conserved hypothetical protein 46 [Ehrlichia canis str. Jake]
          Length = 239

 Score =  203 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL+V   L   +         HY+ +V+R    D I LFNGKDGEW+ +I  V  + +  
Sbjct: 9   RLYVTCALNKSSIITLDKLASHYICNVMRAANLDEIKLFNGKDGEWIGEIFEVSHNTKII 68

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR 128
           V  Q R Q     +   F+ +K   L  ++++S EMG+  ++P+ T++   ++ N+D+ +
Sbjct: 69  VNEQIRKQVATKCLVLCFAIVKNTALQNVVRQSTEMGVTLMQPLYTKHIATSNINLDKCK 128

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + I AAEQC+ L +P I  P +   L K    +   V  DET   ++  E L    +  
Sbjct: 129 KWAIEAAEQCERLDIPDILSPISFVDLGKLKSSDNNFVICDETGKGKHPSEVL---KNKD 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           N+ I+IGPEGG+ ++E        F   LSLG RIL+ DTA V+A+A V 
Sbjct: 186 NIHIIIGPEGGFSNDELNFA--YSFCDGLSLGTRILKVDTAVVSALAYVN 233


>gi|295103834|emb|CBL01378.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           SL3/3]
          Length = 247

 Score =  203 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 16/248 (6%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           +  R F              G   H+LA V+R K GD ++L +G   E+ + I+  G   
Sbjct: 1   MPHRYFTTE--ISDGTATLRGADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDR 58

Query: 65  IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
           + F VE    S  +   +V  +    K ++L+ +I+  VE+G   I P  +RY     + 
Sbjct: 59  VDFAVEPGYPSAAEPTVEVTLLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178
                +R     + AA+QC    LP +  P      + +++D    ++F  E CG     
Sbjct: 119 EEQKNERYNRIALEAAKQCGRGVLPDVALPLPNFGAVCRSFDQYDLVLFCYE-CGGAPLR 177

Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + L            +AI+ G EGG+ +E +  + +      + LGPRILR +TA +A +
Sbjct: 178 QLLAEAKPADGQKLRLAIVTGAEGGFAAE-EAEMAASAGAKTVGLGPRILRCETAPLAVL 236

Query: 235 ALVQAICG 242
           + V  + G
Sbjct: 237 SAVMTLTG 244


>gi|312135345|ref|YP_004002683.1| hypothetical protein Calow_1326 [Caldicellulosiruptor owensensis
           OL]
 gi|311775396|gb|ADQ04883.1| protein of unknown function DUF558 [Caldicellulosiruptor owensensis
           OL]
          Length = 243

 Score =  203 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 31/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   FV+           +  +  +++  VLR +EGD I L +G + ++ S+I  V K  
Sbjct: 1   MPIFFVEKQNVENDIACITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKDK 59

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E ++ +  + + ++      IK  ++D+++QK+ E+G+  I PV+++      ++
Sbjct: 60  IKLLIESKTLNDRESTKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +DR R     A +QC     P I  P  +  + + +     I+F      SE S 
Sbjct: 120 KEEKKLDRWRKIAQEAQKQCLRPIPPLIEVPIRISEIKEKYLDKLDILFIPYEKESETSR 179

Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             L +  +  N+ ILI                     E L +   V  +SLG RILRS+T
Sbjct: 180 WSLPS--NYNNIGILIGPEGGFEEEE----------VEELKTFKNVQVISLGKRILRSET 227

Query: 229 AAVAAMALVQAICG 242
           A++AA++++    G
Sbjct: 228 ASIAALSILMHELG 241


>gi|242038259|ref|XP_002466524.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor]
 gi|241920378|gb|EER93522.1| hypothetical protein SORBIDRAFT_01g009310 [Sorghum bicolor]
          Length = 287

 Score =  203 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 10/248 (4%)

Query: 2   KIHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           +    L R      P       +  GD++ ++  VLR+   D + LF+G  G     I  
Sbjct: 40  RARGGLPRFHAPSLPSSKGEVIRIQGDEFWHMTRVLRLGINDRVELFDGAGGLAEGFIHK 99

Query: 61  VGKSIR-FKVEYQSRSQTKQSDVQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRY 116
           V K     ++   +R    Q    ++F+    +K  R D++I+K  E+G  ++ P++T  
Sbjct: 100 VDKGGSDVELLEDARIVAPQGIQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTER 159

Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                   +DR++   ++A +QC  +    + PP  +  LL     +     A  +  + 
Sbjct: 160 CHTIAENRVDRLQRLVLAAVKQCQRIHEMSLKPPIQISHLLPVVSQSKLAFLA--SAEAP 217

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             L  L   +   +  +++GPEG +  EE  +L +     P+ LGP  LR +TA ++ ++
Sbjct: 218 PLLSVLPKSSTEQSGLLIVGPEGDFTEEEVHSLKAAGAA-PVGLGPCRLRVETATISLLS 276

Query: 236 LVQAICGD 243
            +  +  D
Sbjct: 277 ALM-LWSD 283


>gi|257437591|ref|ZP_05613346.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           A2-165]
 gi|257199898|gb|EEU98182.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           A2-165]
          Length = 305

 Score =  203 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 18/249 (7%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           +  R F              G   H+L+ V+R K GD ++L +G   E+ + I+  G ++
Sbjct: 59  MPHRYFTTE--ISNGTATLRGADAHHLSRVMRGKLGDTVILCDGNAVEYTATITGFGPET 116

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
           + F VE    S  + S +V       K ++L+ +I+  VE+G     P  +RY     + 
Sbjct: 117 VEFSVEPGYPSAAEPSVEVTLFVGYPKQDKLEQVIRHGVELGCTHFVPFFSRYCVAAPKK 176

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178
                +R       AA+QC    LP +  P      L ++ +    ++F  E  G+   L
Sbjct: 177 EEQKNERYNRIAFEAAKQCGRGVLPDVALPLPNFGALCRSLEGYDLVLFCYELGGA--PL 234

Query: 179 EKLHAIAHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            +L A A   +     +A++ G EGG+ +E +  + +   V  + LGPRILR +TA +A 
Sbjct: 235 RQLLADAKPADGQRLKIALITGAEGGFAAE-EAEMAANAGVKTVGLGPRILRCETAPLAV 293

Query: 234 MALVQAICG 242
           ++ V  + G
Sbjct: 294 LSAVMTLTG 302


>gi|67459503|ref|YP_247127.1| hypothetical protein RF_1111 [Rickettsia felis URRWXCal2]
 gi|67005036|gb|AAY61962.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
          Length = 240

 Score =  203 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 13/229 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + + D  HY+  VLR+K  D + +FNG DGE+L++I+Y
Sbjct: 1   MKYN----RIYINSHLAENSKIELANDHVHYVKTVLRLKVNDGLRIFNGTDGEFLAQITY 56

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK  +  +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR  Q 
Sbjct: 57  IGKHKLSVRLKEQLKKPYTESALTLAAAIIKQDKLMLAINMATQLGITKIIPLITRRCQF 116

Query: 120 THYNMDRVR---TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
              N++R+       I A EQ + LT P I    T++  LK   +N  +++A+E    EN
Sbjct: 117 RTINIERLTKCV---IEATEQSERLTPPIIEKAITIQDYLKQ--NNNLMLYANEHEKEEN 171

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           S+ ++ +     ++ I+IGPEGG   +E   L S      +SLG  ILR
Sbjct: 172 SILRILSSLSNSDITIIIGPEGGLTDDELGLLASYKNTKSVSLGNNILR 220


>gi|298694859|gb|ADI98081.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 220

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           +R   G  I+L       +L +I+ +   K      E Q+ +     DV      IK ++
Sbjct: 1   MRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADK 60

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            ++++QK+ E+G  +   V    +            ++R +     AAEQ   L +P I 
Sbjct: 61  YEWLLQKATELGASSFIAVSMERSIVKLNEGKVAKKIERWQKIIKEAAEQSYRLVIPSIQ 120

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEGGYHSE 203
             + L+ +    D+   I+ A E    +  L    + L        V ++ GPEGG    
Sbjct: 121 FESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSEN 180

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           E     +    T + LGPRILR++TA + A++ +   
Sbjct: 181 EISLFSNTS--TVVGLGPRILRAETAPLYALSAISYE 215


>gi|121611717|ref|YP_999524.1| 16S ribosomal RNA methyltransferase RsmE [Verminephrobacter
           eiseniae EF01-2]
 gi|121556357|gb|ABM60506.1| protein of unknown function DUF558 [Verminephrobacter eiseniae
           EF01-2]
          Length = 273

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 24/243 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKS- 64
           + R     PL    +         +   VLR++ GD I LF  G+ GE+ + +  +G+S 
Sbjct: 4   MPRFHCPSPLATGAELDLPARVARH-VQVLRLQPGDGITLFHGGQGGEFDATVLRMGRSD 62

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +R ++    R + +    V  +   +   R+D++++K+ E+G  +I P++T  +      
Sbjct: 63  VRVQLGAHHRIEREAPRAVHLLAGIMANERMDWLVEKATELGAASITPLLTERSVLKLRG 122

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC------QIVFAD-- 169
           +     +   +   ++A EQC    +P ++P T L   ++     C      +++ A   
Sbjct: 123 ERADKKIAHWQAVAVAACEQCGRNRVPPVHPATALAHWVRAQAAACVQQTALRLLLAPGP 182

Query: 170 -----ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
                 +  + +   +  A      + IL G EGG  S E++      F TP++LGPR+L
Sbjct: 183 GAAPLHSAAAADRGLRPAADRDERPLYILSGAEGGLSSAEQDLARQHGF-TPVTLGPRVL 241

Query: 225 RSD 227
           R++
Sbjct: 242 RAE 244


>gi|325859585|ref|ZP_08172718.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS
           18C-A]
 gi|325482865|gb|EGC85865.1| RNA methyltransferase, RsmE family [Prevotella denticola CRIS
           18C-A]
          Length = 259

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 27/252 (10%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFK 68
            +V     +    +   ++  +   VLR+KEGD + L +G+   + +++     K   + 
Sbjct: 7   FYVPNAAALN---ELPAEEAVHALRVLRLKEGDEMFLMDGEGNFYQAEVVLATAKKCVYT 63

Query: 69  VEYQSRS-QTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +    R        +    +P K   R+++M +K+ E+G   I  +  R+++      DR
Sbjct: 64  IRQTMRQKPAWSGRIHLAIAPTKDMGRMEWMAEKATEVGFDEISFLDCRFSERKTLRADR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------------- 173
           +    +SA +Q      P + P ++    ++N     +                      
Sbjct: 124 IEKIVVSAVKQSRKGWKPLVNPMSSFISFVENCPDKGRKFICHCYPEIPRTDFFTAITSA 183

Query: 174 ------SENSLEKLHAIAHI-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                  +N LE          ++ +LIGPEG +  EE     +  F + ++LG   LR+
Sbjct: 184 LQPGIFLQNGLEAQKEHPSGAADITVLIGPEGDFSIEEVRLAMAHGFES-VTLGKSRLRT 242

Query: 227 DTAAVAAMALVQ 238
           +TA ++A+ + Q
Sbjct: 243 ETAGLSAVMMSQ 254


>gi|302871657|ref|YP_003840293.1| hypothetical protein COB47_1006 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574516|gb|ADL42307.1| protein of unknown function DUF558 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 243

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 31/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   FV+           +  +  +++  VLR +EGD I L +G + ++ S+I  V K  
Sbjct: 1   MPIFFVEKQNVENDIAFITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKDK 59

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E ++ +  + + ++      IK  ++D+++QK+ E+G+  I PV+++      ++
Sbjct: 60  IKLLIESKTLNDRESTKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDVSE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +DR R     A +QC     P I  P  +  + + +     I+F       E S 
Sbjct: 120 KEEKKLDRWRKIAQEAQKQCLRPKPPLIEMPIRISEIKEKYLDKLDILFIPYEKELETSR 179

Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             L +  +  N+ ILI                     E L +   V  +SLG RILRS+T
Sbjct: 180 WSLSS--NYNNIGILIGPEGGFEEEE----------VEELKTFKNVQVISLGKRILRSET 227

Query: 229 AAVAAMALVQAICG 242
           A++AA++++    G
Sbjct: 228 ASIAALSILMHELG 241


>gi|255020274|ref|ZP_05292342.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970194|gb|EET27688.1| Ribosomal RNA small subunit methyltransferase E [Acidithiobacillus
           caldus ATCC 51756]
          Length = 246

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 16/248 (6%)

Query: 7   LKRLFV---DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R+ +   + P              H+L  VLR + G  + LF G   ++ +++    G
Sbjct: 1   MPRIHLYSTETP-KEDGHWLLPPAPSHHLLRVLRGRPGQELTLFTGDGRDYPAELLGARG 59

Query: 63  KSIRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
           K     V   + R              I+  R D+ +QK+ E+G  A++PV+ R++    
Sbjct: 60  KQALLAVGRARWRDTGSPLQCCLWLPVIRAERWDWALQKATELGAWALQPVVCRHSLVPL 119

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                     R R   I+A EQ     +P + P   L  L          V  D + G+ 
Sbjct: 120 AEARAPKRQQRWRDIVIAACEQSSATRIPELRPAMALSEL--GPPEVDLAVVCDPSYGT- 176

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +  + L        +A+L GPEGG H EE     SL F+    LGPRILR++TA++ A+ 
Sbjct: 177 SLGKVLGTRRSARRIALLCGPEGGLHPEELAWAESLGFLGA-HLGPRILRAETASITALT 235

Query: 236 LVQAICGD 243
           L Q   GD
Sbjct: 236 LAQGFLGD 243


>gi|303232126|ref|ZP_07318829.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513232|gb|EFL55271.1| RNA methyltransferase, RsmE family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 243

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 105/247 (42%), Gaps = 18/247 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           +K++F+  PL          D  H++ HV R      I +  G D      I  +   I 
Sbjct: 1   MKKIFIPTPL--DESIVLPKDVTHHILHVFRHNIEKPITVT-GSDN--RCGIYQINDEIN 55

Query: 66  ---RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
              +  +     S T       + S +K  +L++++QK+ E+ +  +  V T        
Sbjct: 56  GLAQASLIEYIDSPTSMHRTILVQSYLKGEKLEWVLQKATELNVDTVYLVPTSNCVAKYD 115

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--S 174
            +       R     + A++QC    LP +     L  +L       ++V  +   G   
Sbjct: 116 AKKLQSKYSRWEKIMLEASQQCGRTQLPTLVVDEPLSNVLDIESECLKLVAYENEAGYTI 175

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +++L+ +++ +   ++ I IGPEGG+  +E   +        ++LG  ILR++TAA+AA+
Sbjct: 176 KDALKAINSDSTNRDILICIGPEGGFQEKEINDIIECGG-QSVALGHTILRAETAAIAAL 234

Query: 235 ALVQAIC 241
           ++V    
Sbjct: 235 SMVHYEL 241


>gi|241767207|ref|ZP_04764956.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN]
 gi|241362156|gb|EER58240.1| protein of unknown function DUF558 [Acidovorax delafieldii 2AN]
          Length = 245

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 25/237 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK------DGEWLSKISY 60
           + R      L    +         +   VLR++ GD I LF+G        GE+ + +  
Sbjct: 1   MPRFHCPVSLATGAELDLPAGAARH-VQVLRLQPGDGITLFHGGQDEGSPGGEFDATVLR 59

Query: 61  VGKS-IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
           +G+S +R +V  + +  +     V  +       R+D++++K+ E+G+ +I P++   + 
Sbjct: 60  MGRSDVRVQVGTHHAIEREAPRAVHLLAGITANERMDWLVEKATELGVASITPLLAERSV 119

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFA 168
                +     +   +   ++A EQC    +P ++    L   L+          +++ +
Sbjct: 120 LKLKGERAEKKLAHWQAVAVAACEQCGRNRVPVVHEAVDLAGWLRAHAPMPAQGMRLLLS 179

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                       LHA A    V  L GPEGG  + E++   +  F  P++LGPR+LR
Sbjct: 180 LRAGTG-----PLHATAGTGAVVFLSGPEGGLSAAEEDLALAQGFA-PVTLGPRVLR 230


>gi|300727240|ref|ZP_07060656.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14]
 gi|299775478|gb|EFI72072.1| RNA methyltransferase, RsmE family [Prevotella bryantii B14]
          Length = 243

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 100/237 (42%), Gaps = 10/237 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F     C + +     D+ ++   VLR++ GD + L +G    + ++++         
Sbjct: 5   RYFYVPDACHRDE--LPVDEANHALRVLRLQSGDQMFLMDGNGAFYEAEVTLASSKHCHY 62

Query: 69  VEYQSRSQTKQSD--VQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
               +  Q K     +    +P K   R+++M +KS E+G+     +  ++++      +
Sbjct: 63  RITNTLVQEKAWKGKIHLGIAPTKMMERIEWMAEKSTEIGIDEFSFLHCKFSERKVLKKE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS---LEKL 181
           R+    +SA +Q     +P ++  T     +      +  I         ++    L  L
Sbjct: 123 RIEKIVVSAMKQSRKPWMPVVHEMTAFRDFIDAHTTGHRYICHCYNEIEKKDLYTELLLL 182

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                +P V IL+GPEG +  +E     S  F + +SLG   LR++TA ++ + + Q
Sbjct: 183 AKDEAVPEVTILVGPEGDFSIDEVNYALSQGFES-VSLGNARLRTETAGLSGVMMAQ 238


>gi|330994720|ref|ZP_08318643.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
 gi|329758361|gb|EGG74882.1| Ribosomal RNA small subunit methyltransferase E [Gluconacetobacter
           sp. SXCC-1]
          Length = 246

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 10/226 (4%)

Query: 8   KRLFVD----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            RLF+      P+      +    Q HYL  VLR + G  + +FN +DG+W   I ++ +
Sbjct: 5   PRLFIPPDTTAPMVAGGMLELEPGQAHYLGAVLRQQAGGEVAVFNARDGQWQGVIDHLRR 64

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
              + ++  ++R+      +  +F+P+K +  + +I+   E+G+    PV+T  T     
Sbjct: 65  ERCQIRLVERTRAPEATVGLGLLFAPLKRDATETVIRMGTELGVTRFCPVVTERTNTHRL 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N  R+ +    AAEQC+ L +P I P   L  LL  W     +  A E            
Sbjct: 125 NAARLESIAREAAEQCERLDVPGIDPLVPLVNLLAQWPEGISLFAALERSAPRPMAAPAQ 184

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A        +LIGPEGG+ + E++ L +  FV P+SLG  +LR+DT
Sbjct: 185 AGD-----CVLIGPEGGFSAREQDMLRARAFVRPVSLGSLVLRADT 225


>gi|225164644|ref|ZP_03726886.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
 gi|224800744|gb|EEG19098.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
          Length = 263

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 26/261 (9%)

Query: 6   HLK--RLFVDFPLCIKTQ------GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57
            +   R+F   P                  + H+L  V R + GD +++F+G+  EW   
Sbjct: 2   RMPDFRVFCSAPASDAHTSAQALRFLLDAAESHHLVVVNRARAGDPVVVFDGRGREWTGT 61

Query: 58  ISYVGKSIRFKVEYQSR-----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112
           ++   K                + +    V    +  K   +D +++ + E+G+  I P+
Sbjct: 62  LAEANKRAAVIAVGTDAQAGRLAPSLPCAVTLAQALPKGGVMDDIVRHATELGVTRIVPL 121

Query: 113 ITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
            +  TQ       +   +++ R   + A +QC    LP I P   L   L+        +
Sbjct: 122 ESARTQVHLDGGRSDKKLEKWRAGALEACKQCGNPWLPEIAPVRGLAEFLREVGAAELRL 181

Query: 167 FADETCGSENSLEKLHAIAH------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220
            A    G+ +  E +           I +   L+GPEG   +EE +   +  F   ++LG
Sbjct: 182 VASLHPGARHVREVVAEARAANPTRTIKSAIWLVGPEGDLTAEEIDAALAAGF-QAVTLG 240

Query: 221 PRILRSDTAAVAAMALVQAIC 241
             +LR DTAA  A++++    
Sbjct: 241 ALVLRCDTAATYALSVLNHEL 261


>gi|218288633|ref|ZP_03492910.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241290|gb|EED08465.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 250

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           L RLF+D  +    +    G+  H+ + VLR + G+ +L+ +  +G + ++I+ V    I
Sbjct: 2   LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIADVRPGEI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------- 118
              +  ++ S   +     +    K  ++D ++QK  E+G           +        
Sbjct: 61  CVHLRERAPSNEPKRSFVLVQGLAKGEKMDTILQKCTEIGAWGFVVFEAERSVVRLSGAA 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176
                + R R     AA Q     +PF+    +    L     +    ++  DE   +  
Sbjct: 121 KVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLAALTEHGVDHVLVLDEEERANG 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L  + A       A+++GPEGG    E+           ++LGPRILR++TA   A+A+
Sbjct: 181 ILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALAI 240

Query: 237 VQAICGD 243
             A  GD
Sbjct: 241 ALAEWGD 247


>gi|225012984|ref|ZP_03703401.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-2A]
 gi|225002883|gb|EEG40862.1| protein of unknown function DUF558 [Flavobacteria bacterium
           MS024-2A]
          Length = 239

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 10  LFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           LF D  + +KT +   + ++  ++A VLR   G+ I + NG   EW   +++V       
Sbjct: 3   LFYDALIDLKTKEFTFNKEESKHIAKVLRKSSGETITVTNGSGLEWTGTLTFVSPNKTIA 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +++   +   K+  +    +P K N R+++M++K  E+G+ +I PV+  +++      +R
Sbjct: 63  QIKKSFQHLEKKHQIHLAIAPTKNNSRMEWMLEKLTELGIASITPVLCDHSERKIIKKER 122

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                ++  +Q     LP I  P +    +   + +   +   E    +  ++   +   
Sbjct: 123 FEKIIVAGLKQAQHFFLPKINDPMSFSKFIATPEFDQIFIAHCEDQPKQRLIDIPLSGTQ 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              + ++IGPEG +   E         + P+SLG +  R++TA +
Sbjct: 183 ---ICLMIGPEGDFSPSEINAAIQKE-IIPISLGNQRFRTETAGL 223


>gi|325831347|ref|ZP_08164601.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1]
 gi|325486601|gb|EGC89049.1| putative 16S rRNA methyltransferase RsmE [Eggerthella sp. HGA1]
          Length = 291

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 21/257 (8%)

Query: 7   LKRLF-VDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           L+  +  D  L  +       + S D   + A VLR+  G++I + +     +  +I+  
Sbjct: 3   LQHFYLHDQVLADEGAPSFPLRLSPDDAKH-ARVLRLAPGEHIAVVDAAQDYFECEITAF 61

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             ++      Q     ++  V  +    K ++++ +I+ + E+G+ A  P+    +    
Sbjct: 62  DDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMSCERSIVRL 121

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172
             +       R R    SAA Q      P +  P  L  +     H   ++   E     
Sbjct: 122 DAKKAAARTQRWRAIAKSAAMQSGQRACPEVGEPMALADVCAFLAHATAVLVCWEEAPLD 181

Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRS 226
                  E  L    A+     +A+++GPEGG    E + L +     + +SLG  ILR+
Sbjct: 182 ARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRT 241

Query: 227 DTAAVAAMALVQAICGD 243
           +TA + A ALV    G 
Sbjct: 242 ETAGIVAPALVLHELGR 258


>gi|327402528|ref|YP_004343366.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola
           taffensis DSM 16823]
 gi|327318036|gb|AEA42528.1| Ribosomal RNA small subunit methyltransferase E [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%)

Query: 7   LKRLF-VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           ++R F V+ P           ++  ++  VLR   GD  LL NG      ++++    K 
Sbjct: 1   MRRFFLVEIPNS--ETFFLPEEESKHIIRVLRYVNGDQFLLLNGLGLIVTAEVTDAHPKK 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
              KV  + +     S      +P K  +R+++M++K VE+G   +  +    ++     
Sbjct: 59  CAVKVVSKEQKTRDGSGFHLGIAPTKNLDRMEWMVEKIVEIGATKLTFLNCERSERVQLK 118

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           +DR++   ISA +Q     L  I    +    +    +      A    GS+ S+++L  
Sbjct: 119 LDRLQRVAISAMKQAQHDFLLEIEELQSFSDFVAKNPNGG---LAHCMNGSKQSVKELKF 175

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA--MAL 236
            +      ILIGPEG +   E E      +   + LG   LR++TA + A  +A+
Sbjct: 176 PS-----RILIGPEGDFSEAELELALKHGY-EAVHLGESRLRTETAGMVASVLAI 224


>gi|91202795|emb|CAJ72434.1| similar to RNA methyltransferase YggJ [Candidatus Kuenenia
           stuttgartiensis]
          Length = 244

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 13/241 (5%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F+   + I ++    G + H++ HV R K+G+ I LF+GK  E+ + +    +  R K
Sbjct: 5   RFFIPN-VSIDSEIWIEGKEAHHILHVKRAKQGNKITLFDGKGIEYKAVVVET-QRARLK 62

Query: 69  VEYQS---RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNT 120
           V  +S     +     +    S  K    D +IQK  E+G+  + P+    +     + +
Sbjct: 63  VFIESSLVVDREPNVSITIAVSIPKGKFSDILIQKCSELGIHTLTPLHCERSVVAIKETS 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLE 179
               +R     I +++QC    L  I     +E  LK   D++  ++         +   
Sbjct: 123 AEKRERWNKIVIESSKQCKRNILTEITTGVAIEDFLKTLCDYDLSLMPCLRRHAM-SLKA 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L        +  LIGPEGG+   E E       + P++LG   LR +TAA+A  +++  
Sbjct: 182 VLRERPSAKKIVCLIGPEGGFTDNEIERAVEKGCI-PVTLGSSTLRIETAAIAVSSMLLY 240

Query: 240 I 240
            
Sbjct: 241 E 241


>gi|257866973|ref|ZP_05646626.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873307|ref|ZP_05652960.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801029|gb|EEV29959.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807471|gb|EEV36293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 251

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P   K     SG+ +H++  V+RM  G  + L        ++KI    +   
Sbjct: 1   MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  E +   Q K+  +Q   +    K ++L+ ++QK  E+G  A         V+    +
Sbjct: 61  YLEEVEKEQQDKELPLQVTIASGYPKGDKLELIVQKGTELGAAAFIGFPAQTSVVKWDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
                  R++     AAEQ     +P I      +   ++      ++ A E    +   
Sbjct: 121 KLQKKQQRLQKIAQEAAEQSQRQIVPAITLLDNAKAFWQSLSQYDAVLVAYEESAKQGEA 180

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              L+ + A+     V  + GPEGG    E E            LGPRILR++TA    +
Sbjct: 181 AMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQNN-AKLCGLGPRILRTETAPFYFL 239

Query: 235 ALVQAIC 241
           + V  + 
Sbjct: 240 SAVSVLT 246


>gi|317490537|ref|ZP_07949014.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316910352|gb|EFV31984.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 291

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 21/257 (8%)

Query: 7   LKRLF-VDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           L+  +  D  L  +       + S D   + A VLR+  G++I + +     +  +I+  
Sbjct: 3   LQHFYLHDQVLADEGAPTFPLRLSPDDAKH-ARVLRLAPGEHIAVVDAAQDYFECEIAAF 61

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             ++      Q     ++  V  +    K ++++ +I+ + E+G+ A  P+    +    
Sbjct: 62  DDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMACERSIVRL 121

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172
             +       R R    SAA Q      P +  P  L  +  +  H   ++   E     
Sbjct: 122 DARKAAARTQRWRAIAKSAAMQSGQRVCPEVGEPMALADVCASLAHATAVLVCWEEAPLD 181

Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRS 226
                  E  L    A+     +A+++GPEGG    E + L +     + +SLG  ILR+
Sbjct: 182 ARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRT 241

Query: 227 DTAAVAAMALVQAICGD 243
           +TA + A ALV    G 
Sbjct: 242 ETAGIVAPALVLHELGR 258


>gi|21674816|ref|NP_662881.1| hypothetical protein CT2005 [Chlorobium tepidum TLS]
 gi|21648035|gb|AAM73223.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 248

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 15/228 (6%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS 80
               G+++H+LA VLR + GD + + +G        +  +GK S+   +         ++
Sbjct: 18  AIIDGEEFHHLARVLRCQPGDVVPITDGAGFAAELMVGSIGKHSLDGAICNPRTVPPPKT 77

Query: 81  DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTIS 133
            V    S +K+  R D  ++K+ E+G   I P+IT+ T            ++R R    S
Sbjct: 78  QVTVALSLLKSPQRFDLFLEKATELGAARIVPMITKRTVSTPDSGKVGRKLERWRGIVQS 137

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           AA Q     LP +  P T    L    ++ +++  +    SEN+            +  L
Sbjct: 138 AARQSRRYHLPELMSPLTFREALVLDGYDLRLIAHE----SENAFPSFE--PAGKKILFL 191

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +G EGG+   E        F TPLS G  +LR++TA + A+ALV+A  
Sbjct: 192 VGGEGGFTDAEVADAVEAGF-TPLSFGESVLRAETAGIFAVALVRARL 238


>gi|257877049|ref|ZP_05656702.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811215|gb|EEV40035.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 251

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 97/247 (39%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P   K     SG+ +H++  V+RM  G  + L        ++KI    +   
Sbjct: 1   MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGAKVGLVFEDHLAIIAKIKEADEETV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  E +   Q K+  +Q   +    K ++LD ++QK  E+G  A         V+    +
Sbjct: 61  YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAFIGFPAQTSVVKWDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
                  R++     AAEQ      P I      +   ++      ++ A E    +   
Sbjct: 121 KLQKKQQRLQKIAQEAAEQSQRQIAPAITLLDNAKAFWQSLSQYDAVLVAYEESAKQGEA 180

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              L+ + A+     V  + GPEGG    E E            LGPRILR++TA    +
Sbjct: 181 AMLLQVITALPVGSKVLAIFGPEGGLTPSEIEEAQQNN-AKLCGLGPRILRTETAPFYFL 239

Query: 235 ALVQAIC 241
           + V  + 
Sbjct: 240 SAVSVLT 246


>gi|256426185|ref|YP_003126838.1| hypothetical protein Cpin_7237 [Chitinophaga pinensis DSM 2588]
 gi|256041093|gb|ACU64637.1| protein of unknown function DUF558 [Chitinophaga pinensis DSM 2588]
          Length = 234

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 6/233 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
            +                   Y   VLR ++G+ +LL +G+ G + + I+    K     
Sbjct: 2   FYAKDITPQSGHYTMDEPTSKYCIMVLRHEKGNEVLLTDGRGGRYTTTITDDNRKKCIVT 61

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
           V          S V+   S  K + R+++ ++K+ E+GM  I P++++ T+   +  DR 
Sbjct: 62  VNQYELMPPVASPVRIAISFTKNSSRIEWFLEKAAEIGMQMIIPLVSQRTEKEKFRADRF 121

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               +SA  Q     LP +  P + + L++        +     C  E       A+   
Sbjct: 122 ENILVSAMLQSQQYYLPELTAPASFDTLVQQPPAQQLFIAH---CLPEQKTHLWQAMQPG 178

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            +  +LIGPEG +  EE     +  F  P+SLG   LR++TA V    ++ A+
Sbjct: 179 KDSLLLIGPEGDFTPEEIHLALNKGF-QPVSLGDNRLRTETAGVVGCTMMNAV 230


>gi|329118281|ref|ZP_08246991.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465702|gb|EGF11977.1| RsmE family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 239

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F D  LC         +   +L HVLR + G+ I LFNG   E+ + ++ V K   
Sbjct: 1   MPRFFADAALCRGATVALPDNVVRHL-HVLRCRAGEKIALFNGNGREYAAVLARVDKRAA 59

Query: 67  FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                  R         V  + +     R+D+ +QKSVE+G+ A+ PVI+  +      +
Sbjct: 60  MAEILDERPSENESPLAVTLVQAVSAGERMDFTLQKSVELGVAAVIPVISSRSVVRLDGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +   +SA EQ     +P + P       L         +       S N+ 
Sbjct: 120 RAQKRVVRWQEIVVSACEQSGRCVVPEVRPLLPYAQALAALPDADAKLLM-----SLNNR 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           + L  I    +V ++ GPEGG+  EE+E   +  F + L+LG R+LR++TAA+AA+A +Q
Sbjct: 175 QSLRGIPPPQSVILMAGPEGGWTHEEEEAAFAAGF-SGLTLGRRVLRTETAALAALAAMQ 233

Query: 239 AICGDW 244
            + GD+
Sbjct: 234 TLWGDF 239


>gi|255034262|ref|YP_003084883.1| hypothetical protein Dfer_0449 [Dyadobacter fermentans DSM 18053]
 gi|254947018|gb|ACT91718.1| protein of unknown function DUF558 [Dyadobacter fermentans DSM
           18053]
          Length = 235

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +   P       +   ++  + + VLR+  GD I + NGK      +++  G+ + ++V
Sbjct: 4   FYQPDPHI----FELDEEEARHSSKVLRLGSGDIIQVTNGKGLLQKCRLNIQGRRVGYEV 59

Query: 70  EYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNM 124
                ++ +   V    +P  K  R ++M++K  E+G+  I  V+T +T     N   N+
Sbjct: 60  IESKTAERRPFAVHMAIAPTRKAERNEWMVEKMTEIGVERIDFVVTEHTNPETLNRVVNL 119

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK-LHA 183
            R+     +A +Q     +P I      E  +KN     +++        +N++E     
Sbjct: 120 TRLNRIAAAAMKQSQQFYMPVITVNNKYEPFIKNAGDEVRLIAY---VPEQNTVEHVFSK 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           I    +  +LIGPEG +  +E E      F T +SLGP  LR++TAAVA    V 
Sbjct: 177 IKKGADTTLLIGPEGDFSPKEVELALQAGFQT-VSLGPTRLRTETAAVAGCHAVN 230


>gi|91214831|ref|ZP_01251804.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC
           700755]
 gi|91187258|gb|EAS73628.1| hypothetical protein P700755_18239 [Psychroflexus torquis ATCC
           700755]
          Length = 233

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 8/234 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSI 65
           ++  +        T    +  +  +++ VLR   G++I L NG         IS   K  
Sbjct: 1   MQLFYEPNFDSSATSISINEMESRHISKVLRKSIGESIYLTNGLGICAEGILISNHPKKC 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           + +V+     +     +    +P K  +R ++ ++K+ E+G+  I P++  +++      
Sbjct: 61  KVEVKTIIEEKKPNFRIHIAIAPTKANDRFEWFLEKATEIGIDEITPLLCDHSERRKIKA 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           DR      +A +Q     LP + P  +   L+K+   + +++   E    +++ EKL   
Sbjct: 121 DRYEKVLQTAMKQSLKYRLPLLNPMISFNDLMKSDSDSKKMIAHCE----DDTKEKLSGT 176

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  N  ILIGPEG +  +E +      F+ P+SL    LR++TA + A   V 
Sbjct: 177 VNRDN-LILIGPEGDFSIDEIKKAIKHEFL-PISLSEARLRTETAGIVACHTVN 228


>gi|93006276|ref|YP_580713.1| hypothetical protein Pcryo_1450 [Psychrobacter cryohalolentis K5]
 gi|92393954|gb|ABE75229.1| protein of unknown function DUF558 [Psychrobacter cryohalolentis
           K5]
          Length = 299

 Score =  201 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 109/295 (36%), Gaps = 61/295 (20%)

Query: 7   LKRLFVDFP--------------------LCIKTQGKASGDQYHYLAHVLRMKEGDNILL 46
           ++R F                        L I    + +    H+   VLR   GD  +L
Sbjct: 1   MRRFFYATNSNISNDVTNEKAATYPQLSTLPIGASVELTESIIHHWCRVLRANIGDKGIL 60

Query: 47  FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEM 104
           F+G  GE+  +I  + K           +    + +      +  +  R+DY IQKS E+
Sbjct: 61  FDGFGGEYQVQILTISKKNATVTLLSHTNNDNSAPIFTKIGLVMSRGERMDYAIQKSTEL 120

Query: 105 GMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK- 157
           G+ AI+ + + + +           +   +   I+A EQC +   P I  P  +   LK 
Sbjct: 121 GVTAIQLLSSHHGEVNLKPAQVEKKLAHWQQVAIAACEQCGLNRPPLIIAPIPINDWLKP 180

Query: 158 -----------------------------NWDHNCQIVFADETCGSENSLEKLHAI--AH 186
                                            + ++  +    G     + L ++    
Sbjct: 181 ITTTTPVKIEATISSMVTTLSQDAYYQVLQQPADLRLQLSVPAAGQPAMPDSLLSVLQQP 240

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           +P + +LIGPEGG  + E      + F  P  +G R+LR++TA V A+A +QA+ 
Sbjct: 241 VPYIELLIGPEGGLSANECAQAADVGF-EPWQIGTRVLRTETAPVVALATLQALL 294


>gi|116333373|ref|YP_794900.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367]
 gi|116098720|gb|ABJ63869.1| hypothetical protein LVIS_0726 [Lactobacillus brevis ATCC 367]
          Length = 250

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 11/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKS 64
           ++R F+D      T        YH+   VLR + G      + +   +  ++  V   ++
Sbjct: 1   MQRYFLDETGVDGTNLTLPAAIYHHWVTVLRAEVGSVAEFVDDQAQLFHGQLVTVTPDQA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                   + +     +V       K  + +++ QK+ E+G+  I      ++       
Sbjct: 61  TVTLTAVPTPAVELPVEVIIACGLPKQEKAEWITQKATELGVTHIIFFGAEWSVAKWSAN 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R+      AAEQ   L  P +     L  +L        + + +     E + 
Sbjct: 121 KVPKKLARLTKIAHGAAEQAHRLRRPTVSYAPNLAAVLATSADVTILAYEESAKQGEQAA 180

Query: 179 --EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             ++L  +    ++  + GPEGG    E     +   +    LGPRILR++TA +  ++ 
Sbjct: 181 LNQQLQRLHPQQHLMAVFGPEGGISPAEVTRAQAAGAILA-GLGPRILRTETAPLYLLSA 239

Query: 237 VQAIC 241
           V  +C
Sbjct: 240 VSVVC 244


>gi|297180287|gb|ADI16506.1| uncharacterized protein conserved in bacteria [uncultured bacterium
           HF4000_05M23]
          Length = 274

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 36/272 (13%)

Query: 7   LKRLFVDF----------PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS 56
           + R +V            P   K      G     L  VLR+  GD I LF+G   EW  
Sbjct: 1   MHRFYVPNIAFPAIDPTGPDSAKRSITLDGQLARQLKTVLRVGIGDRIGLFDGSGLEWEV 60

Query: 57  KISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
           +I  V ++      +          + V  +    +  R++  IQK  E+G     PV++
Sbjct: 61  QIDQVDRTEVAVRLISTVESVPEPFARVTMLLGLARPERIELAIQKCTELGAVRFIPVLS 120

Query: 115 RYTQN------THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF- 167
              Q       +   +DR R   I AAEQC    +P +  P  +   + +     Q+   
Sbjct: 121 ERVQGGVTGAPSGSRLDRWRRIAIEAAEQCGRAVVPPVDEPLPVMDAVNSQLAARQLFCM 180

Query: 168 ADETCGSENSL-EKLHAIAHIP---------------NVAILIGPEGGYHSEEKETLHSL 211
            +E  G  + L E L +I                    +A+LIGP GG    E   +   
Sbjct: 181 WEERTGDSSPLGEALKSIETQALEKNDGQRETGTGGCEMAVLIGPPGGVSHAEASAIQEA 240

Query: 212 PFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              + ++LGPR+LRS+TAA+  M+ +    GD
Sbjct: 241 G-ASLVTLGPRVLRSETAAIVVMSAILYEMGD 271


>gi|288802568|ref|ZP_06408007.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18]
 gi|288335096|gb|EFC73532.1| RNA methyltransferase, RsmE family [Prevotella melaninogenica D18]
          Length = 244

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 103/238 (43%), Gaps = 11/238 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F      ++T+     ++  +   VLR+KEGD + L +G+   + ++++ V       
Sbjct: 5   RYFYVPNAAVETE--LPAEEAVHAIRVLRLKEGDEMFLMDGEGCFYKAEVALVSSKKCLY 62

Query: 69  VEYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
              ++  Q       +    +P K   R+++M +K+ E+G   I  +  ++++      D
Sbjct: 63  TIKETLKQEPVWRGKIHLAIAPTKDMGRIEWMTEKATEVGFDEISFLDCKFSERKTLRAD 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-----SLEK 180
           R+    ISA +Q      P + P T     ++N  +N +                 ++ +
Sbjct: 123 RIEKIVISAVKQSRKGWKPVVNPMTPFRRFIENCSNNGRKFICHCYPEISRADFFTAISQ 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               +   ++ +L+GPEG +  +E        F + + LG   LR++TA ++A+ + Q
Sbjct: 183 EEQPSSAEDITVLVGPEGDFSIDEVRFALEHGFESVI-LGNSRLRTETAGLSAVMMSQ 239


>gi|332753790|gb|EGJ84169.1| RNA methyltransferase family protein [Shigella flexneri K-671]
 gi|332754361|gb|EGJ84727.1| RNA methyltransferase family protein [Shigella flexneri 2747-71]
          Length = 178

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 12/181 (6%)

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           +E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         +  + 
Sbjct: 2   LEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNK 61

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + + +   I+A EQC    +P I P   LE      D   ++        S N+L    
Sbjct: 62  KLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPL-- 119

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   G
Sbjct: 120 ---PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRFG 175

Query: 243 D 243
           D
Sbjct: 176 D 176


>gi|315222477|ref|ZP_07864375.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211]
 gi|315188445|gb|EFU22162.1| RNA methyltransferase, RsmE family [Streptococcus anginosus F0211]
          Length = 247

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 24/250 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+             D   ++  V+R+ E D ++L      + L+++S   + + 
Sbjct: 1   MQQYFVNG-QVENPVIIRDKDTLKHMFSVMRLVEDDEVVLVFEDGIKRLARVSDRERHVL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             VE    +      V       K ++L+++ QK+ E+G  AI      ++      + +
Sbjct: 60  NLVEELPDNAELPIHVTVASGFPKGDKLEWVAQKATELGATAIWAFPADWS------VAK 113

Query: 127 VR------------TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
                            + AAEQ     +P +         L       +++ A E    
Sbjct: 114 WDGKKLAKKAEKLEKIVLGAAEQSKRNRVPEVRLFEKKIDFLDCLSQFDRVIVAYEESAK 173

Query: 175 EN----SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           E      ++ +  +     +  + GPEGG    E  TL     +    LGPRILR++TA 
Sbjct: 174 EGESAALVKAVTGLKIGSRILFVFGPEGGLSPAEITTLEEAGAILA-GLGPRILRTETAP 232

Query: 231 VAAMALVQAI 240
           + A++ V  +
Sbjct: 233 LYALSAVSVL 242


>gi|312972813|ref|ZP_07786986.1| RNA methyltransferase family protein [Escherichia coli 1827-70]
 gi|331659081|ref|ZP_08360023.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206]
 gi|310332755|gb|EFP99968.1| RNA methyltransferase family protein [Escherichia coli 1827-70]
 gi|331053663|gb|EGI25692.1| 16S rRNA methyltransferase RsmE [Escherichia coli TA206]
          Length = 182

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
            +E Q   +     +       +  ++++ IQKS+E+G+  I P+ +         +  +
Sbjct: 5   VLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLN 64

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + + +   I+A EQC    +P I P   LE      D   ++        S N+L   
Sbjct: 65  KKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPL- 123

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   
Sbjct: 124 ----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRF 178

Query: 242 GD 243
           GD
Sbjct: 179 GD 180


>gi|76799987|ref|ZP_00781940.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
 gi|76584697|gb|EAO61466.1| conserved hypothetical protein TIGR00046 [Streptococcus agalactiae
           18RS21]
          Length = 222

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 11/218 (5%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91
           + +V+R+ E D + L      + L+K+          +E    +      V       K 
Sbjct: 1   MFNVMRLTEDDQVFLVFDDAIKRLAKVVDSSAHRFQILEELDXNVEMPVQVTIASGFPKG 60

Query: 92  NRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
           ++LD++ QK+ E+G  AI        V+    +      D++    + AAEQ     LP 
Sbjct: 61  DKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQSKRNRLPQ 120

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEGGYH 201
           +                 +I  A E    E  L    + L  +     +  + GPEGG  
Sbjct: 121 VRLFEKKADFQAELAGFDKIFIAYEESAKEGELSALAQNLQTVKAGDKLLFIFGPEGGIS 180

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +E      +  +  + LGPRI+R++TA + A++++  
Sbjct: 181 PKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVISY 217


>gi|218438165|ref|YP_002376494.1| hypothetical protein PCC7424_1175 [Cyanothece sp. PCC 7424]
 gi|218170893|gb|ACK69626.1| protein of unknown function DUF558 [Cyanothece sp. PCC 7424]
          Length = 241

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 7/235 (2%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL ++     +     +  Q HYL  VLR+K G + ++ +G+   W + +      +   
Sbjct: 4   RLVIEPTQKQQEWVNLTEQQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQL--- 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR 126
           ++  + S      +  + +  K N  + +++   E+G+    PVI+  T    +   ++R
Sbjct: 61  LDIITTSTELSIKLTLMVALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVER 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA 185
            R   I AAEQ +   +P I+ P      L                    N L       
Sbjct: 121 WRKIAIEAAEQSEREIIPQIFEPINFPTALTKIKEIETNKYICVTRREEVNHLFIHLQKP 180

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
            + ++ +  GPEGG+ + E +T     F  P+SLG RILR+ TA V   +LV A+
Sbjct: 181 LLNSLVVATGPEGGWTNLEVQTAIKAGF-EPVSLGRRILRAVTAPVYIASLVSAV 234


>gi|304385087|ref|ZP_07367433.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|304329281|gb|EFL96501.1| RsmE family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 245

 Score =  200 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 11/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  L ++ +   S    H+L  V+R + G+ I +       WLS++        
Sbjct: 1   MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQRVWLSQLLDNAAPAS 60

Query: 67  FK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            K V+  ++S     +V       K ++ + +I++  EMG    +    RY+      + 
Sbjct: 61  LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--NS 177
               + R      +AAEQ     +P +    +   L+ +   +  + + +     E  N 
Sbjct: 121 IDRKLQRFEEIAKAAAEQSHRQMIPTV-EIISFADLVNSPVQHRMVAYEESAKEGEFANF 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L   A    +  + GPEGG   EE ++ +   F T   LGPRILR+++A +  ++ +
Sbjct: 180 KRVLSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESAPMYVLSAI 238

Query: 238 QAIC 241
               
Sbjct: 239 SYQF 242


>gi|282891340|ref|ZP_06299842.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498837|gb|EFB41154.1| hypothetical protein pah_c050o135 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 241

 Score =  200 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 9/237 (3%)

Query: 7   LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           +   R ++  P    ++    G ++H+L HV+R + G+++ + NG+ G   + + ++ K 
Sbjct: 1   MPAERYYIPQPFQKGSELIIEGQEFHHLVHVMRTQVGESVEVVNGEGGFGHAVLEHLEKK 60

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
              F+VE   +      +V    +  K NRLD++++K  E+GM       ++  +     
Sbjct: 61  RAIFRVEETVQHPKPAFEVILAQAIPKINRLDFILEKGTELGMTQFWLFPSQRGERKQLT 120

Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R+R  +I+A +QC    LP I     LE   +N       +F +    + + +EK
Sbjct: 121 EHQIERMRALSIAAMKQCGSFYLPTILMKPPLEKWERNLP--LPALFGNVQPDAPSCVEK 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L        V   +GPE G+  EE++TL +L  V  + L P ILR+DTAA+AA+  +
Sbjct: 179 LKQERFQNGVIFFVGPESGFSYEEEKTLQALD-VEGVKLHPHILRTDTAAIAALCAI 234


>gi|148284290|ref|YP_001248380.1| hypothetical protein OTBS_0493 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739729|emb|CAM79559.1| conserved hypothetical protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 250

 Score =  200 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK+   L R++   PL      K S +Q +Y+ +VLR K  D I +FN  +GE+L+ I +
Sbjct: 1   MKLK-KLHRIYSSIPLSKAGTIKLSREQANYIINVLRCKNNDQIRVFNELNGEYLAIIHH 59

Query: 61  VG-KSIRFKVEYQS-----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
              K +  ++  Q+           S +      IK  R+  +I  + ++G+  I P+I+
Sbjct: 60  NNNKEVLLQIINQTKVVAKEVDANNSHLVLAQCIIKPERMARVIDMATQVGITNIVPIIS 119

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            Y+Q+  +N ++     I +  Q + LT+P +  P TL   L   +  C  +        
Sbjct: 120 EYSQHLKFNTEKYNKIIIESCRQSERLTIPILSSPVTLLHFLSQSNSEC--ILCANEQEK 177

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAA 233
              +  + A + +   +ILIGPEGG+  +++  L      +  +S+G  +LRS+TAA+  
Sbjct: 178 IQQIHHIPA-SILSKASILIGPEGGFSEQDQSILRKAGRLIKSISIGRNVLRSETAAIYL 236

Query: 234 MALVQAI 240
           ++ +Q +
Sbjct: 237 LSQLQLL 243


>gi|255004318|ref|ZP_05279119.1| 16S ribosomal RNA methyltransferase RsmE [Anaplasma marginale str.
           Virginia]
          Length = 244

 Score =  200 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 6/212 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
           Q HY+  V+R K GD +LLF+G  GEWL ++S + K  +  + E   R   +   +   F
Sbjct: 32  QAHYVRDVMRAKHGDAVLLFDGTHGEWLCRVSCISKKTVEVEAEKLLRKHVRTRTLVLCF 91

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
           + +K   +  +++++ EMG+   +P+ T Y+     +  + R + + A+EQC    +P +
Sbjct: 92  ALVKGEAMRNVVRQATEMGVTLFQPMRTEYSSAHDIDSRKCRLWAVEASEQCGRQDVPEV 151

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P      L +  + + Q V  DET G +   E L        V +++GPEGG+ +EE  
Sbjct: 152 APVVDFRTLRELHNPDRQFVLCDETGGGKPPREVLQNDRE---VWVIVGPEGGFSNEELC 208

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +     F   +SLG RIL+ DTA V A+A V 
Sbjct: 209 SCED--FCDKMSLGSRILKVDTAVVCALAYVN 238


>gi|257791397|ref|YP_003182003.1| hypothetical protein Elen_1646 [Eggerthella lenta DSM 2243]
 gi|257475294|gb|ACV55614.1| protein of unknown function DUF558 [Eggerthella lenta DSM 2243]
          Length = 291

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 21/257 (8%)

Query: 7   LKRLF-VDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           L+  +  D  L  +       + S D   + A VLR+  G++I + +     +  +I+  
Sbjct: 3   LQHFYLHDQVLADEGAPTFPLRLSPDDAKH-ARVLRLAPGEHIAVVDAAQDYFECEIAAF 61

Query: 62  GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             ++      Q     ++  V  +    K ++++ +I+ + E+G+ A  P+    +    
Sbjct: 62  DDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMSCERSIVRL 121

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--- 172
             +       R R    SAA Q      P +  P  L  +  +  H   ++   E     
Sbjct: 122 DARKAAARTQRWRAIAKSAAMQSGQRACPEVGEPMALADVCASLAHATAVLVCWEEALLD 181

Query: 173 -----GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRS 226
                  E  L    A+     +A+++GPEGG    E + L +     + +SLG  ILR+
Sbjct: 182 ARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRT 241

Query: 227 DTAAVAAMALVQAICGD 243
           +TA + A ALV    G 
Sbjct: 242 ETAGIVAPALVLHELGR 258


>gi|241895699|ref|ZP_04782995.1| protein of hypothetical function DUF558 [Weissella
           paramesenteroides ATCC 33313]
 gi|241871066|gb|EER74817.1| protein of hypothetical function DUF558 [Weissella
           paramesenteroides ATCC 33313]
          Length = 246

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKIS--YVGK 63
           ++R F++  +    + +   +  H+   VLR +EG           E + +KI      +
Sbjct: 1   MQRYFLNE-MPTGNEFRLPEEVAHHFITVLRSREGAQAEFVLPNQHEVIVAKIVRFEAEQ 59

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----Q 118
           +I   +  Q  S     D   +    K ++ + ++QK+ E+G   I  V T ++     Q
Sbjct: 60  AIMAVISRQETSVELPVDTTIVIGLSKGDKPEMVVQKATELGAHHIVVVETAWSVVHWGQ 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSE 175
                + R+     +AAEQ   L +P +   ++L+ L+   D   ++V  +E+     + 
Sbjct: 120 KATKKLVRLNKIAAAAAEQAHRLRIPDVTYESSLDGLM--IDATVKLVAWEESAKQGETG 177

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             + +L+ +    +V  L GPEGG   +E + L    FV P  LGPRILR++TA + A++
Sbjct: 178 ELVRQLNRLQPDDSVCFLFGPEGGLSPQEIDVLVGQGFV-PAGLGPRILRAETAPLYALS 236

Query: 236 LVQAIC 241
           ++  + 
Sbjct: 237 VLSYVL 242


>gi|148555278|ref|YP_001262860.1| 16S ribosomal RNA methyltransferase RsmE [Sphingomonas wittichii
           RW1]
 gi|148500468|gb|ABQ68722.1| protein of unknown function DUF558 [Sphingomonas wittichii RW1]
          Length = 210

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 6/191 (3%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           +R+K GD I LF+   GEW + I  VGK  +  +VE + R +    D+  + +PIK  R+
Sbjct: 2   MRLKAGDAIALFDDMSGEWRAVIEQVGKRAVAVRVEQRMREREAVPDLWLVAAPIKKGRI 61

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           D++ +K+ E+G+   RPVITR T     N+DR+R + I AAEQC+   LP +  P  L  
Sbjct: 62  DWVAEKACELGVARWRPVITRRTIVDRLNLDRLRAHMIEAAEQCERTALPILDEPVKLSA 121

Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
           +L++W  +  ++FADE  G         A+   P  AILIGPEGG+  EE+  + ++P  
Sbjct: 122 MLRDWPADRALIFADEEGGM----PMAEAVKPGP-AAILIGPEGGFTDEERAAILAVPQA 176

Query: 215 TPLSLGPRILR 225
             +SLGPRILR
Sbjct: 177 VGVSLGPRILR 187


>gi|325110548|ref|YP_004271616.1| ribosomal RNA small subunit methyltransferase E [Planctomyces
           brasiliensis DSM 5305]
 gi|324970816|gb|ADY61594.1| Ribosomal RNA small subunit methyltransferase E [Planctomyces
           brasiliensis DSM 5305]
          Length = 248

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 8/231 (3%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R +             +  + H+L +V+R K G  + +FNG        ++   K    
Sbjct: 3   QRYYCPQE-RFDEPFWLTDTEAHHLLNVMRAKPGAEVEVFNGDGLVASVVVTEASKRKAL 61

Query: 68  K--VEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--H 121
              V    R       +    +    K++R  ++++K  E+G+  + P+ T  +  +   
Sbjct: 62  LQPVAGSQRQDPNGLSIPLTLATAVPKSDRFRWLVEKGTELGVTRLVPLKTSRSVVSPRE 121

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             +++ + Y + A +Q    TL  I     L   L        ++          SL   
Sbjct: 122 SKLEKQQQYVVEACKQSGRNTLMEIGTLVDLADYLGQLPPESLLLTGAPAVVDSKSLWSE 181

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                   V + +GPEGG+  EE   L       P+S+GP +LR++TA + 
Sbjct: 182 LVETRPAEVVLFVGPEGGFTPEEDALLAEHG-AKPISVGPYVLRTETAGLT 231


>gi|270291335|ref|ZP_06197557.1| ribosomal RNA small subunit methyltransferase E [Pediococcus
           acidilactici 7_4]
 gi|270280181|gb|EFA26017.1| ribosomal RNA small subunit methyltransferase E [Pediococcus
           acidilactici 7_4]
          Length = 245

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 11/244 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++  L ++ +   S    H+L  V+R + G+ I +       WLS++        
Sbjct: 1   MQRYFINEALALQDEFTLSKADSHHLLKVMRAQIGEKIEVVGSDQKVWLSQLLDNAVPAS 60

Query: 67  FK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            K V+  ++S     +V       K ++ + +I++  EMG    +    RY+      + 
Sbjct: 61  LKAVQEITKSVELPVEVTIACGISKGDKNEQIIKRGTEMGASHFQFFTARYSVARWNEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--NS 177
               + R      +AAEQ     +P +    +   L+ +   +  + + +     E  N 
Sbjct: 121 IDRKLQRFEEIAKAAAEQSHRQMIPTV-EIISFADLVNSPVQHRMVAYEESAKEGEFANF 179

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              L   A    +  + GPEGG   EE ++ +   F T   LGPRILR+++A +  ++ +
Sbjct: 180 KRVLSNTASGDALLAVFGPEGGLAPEEIKSFNDANF-TLAGLGPRILRAESAPMYVLSAI 238

Query: 238 QAIC 241
               
Sbjct: 239 SYQF 242


>gi|302785802|ref|XP_002974672.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii]
 gi|300157567|gb|EFJ24192.1| hypothetical protein SELMODRAFT_232410 [Selaginella moellendorffii]
          Length = 255

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 14/247 (5%)

Query: 3   IHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           + + L R + D  P    T  +  G ++ ++  VLR+ +   + LFNG+ G   + +S V
Sbjct: 1   MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKVLRLGQDQRVELFNGRGGIVTAAVSAV 60

Query: 62  GKSIRFKVEYQ------SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
            +S    V  +          ++   +   F+ +K  R D+M++K  E+G   + P+ T 
Sbjct: 61  RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120

Query: 116 YTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            +         R +   ++A +QC  L    +     +  L      N      D T G+
Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRQSLNISSLKSQVLKNN----EDTTAGA 176

Query: 175 ENSLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              +E  + +   I    +++GPEG +  EEK  L +     P+ LGPR LR +TAA+A 
Sbjct: 177 TEIVEVFNDSSKDIRGGTLIVGPEGDFTDEEKYDLVAAG-AMPVGLGPRRLRVETAAIAM 235

Query: 234 MALVQAI 240
           +A V  +
Sbjct: 236 LATVMLV 242


>gi|255562222|ref|XP_002522119.1| conserved hypothetical protein [Ricinus communis]
 gi|223538718|gb|EEF40319.1| conserved hypothetical protein [Ricinus communis]
          Length = 290

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 10/243 (4%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           L R F +  P       +  GD++ ++  VLR+   D I LFNGK       I  + ++ 
Sbjct: 45  LPRFFCEILPSSKGGIVRVQGDEFWHIVKVLRLSISDRIELFNGKGALVEGCIERIDRTG 104

Query: 65  ---IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-T 120
              +          QT +  V   F  +K  R D++++K  E+G  ++ P++T  + + +
Sbjct: 105 LDFVAVNDPKIVLPQTIKWHVFAAFGSLKGGRADWLVEKCTELGAHSVTPLLTERSPSIS 164

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR+    ++A +QC  L    + PPT +E LL     +     A     +   +  
Sbjct: 165 DNRVDRLERVILAATKQCQRLHEMVLNPPTKVEGLLPLIADSKLSFLA--AAEATPVVNV 222

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L +     +  I++GPEG +   E   +      T + LGP  LR +TA +A +  +  +
Sbjct: 223 LASSRKESSGLIIVGPEGDFTEREAALMMEAG-ATAVGLGPLRLRVETATMALLGTLM-L 280

Query: 241 CGD 243
             D
Sbjct: 281 WSD 283


>gi|323154655|gb|EFZ40854.1| RNA methyltransferase family protein [Escherichia coli EPECa14]
 gi|323173840|gb|EFZ59469.1| RNA methyltransferase family protein [Escherichia coli LT-68]
          Length = 182

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
            +E +   +     +       +  ++++ IQKS+E+G+  I P+ +         +  +
Sbjct: 5   VLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLN 64

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + + +   I+A EQC    +P I P   LE      D   ++        S N+L   
Sbjct: 65  KKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSINTLPL- 123

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                +  V +LIGPEGG  ++E        F T + LGPR+LR++T A+ A+  +Q   
Sbjct: 124 ----PVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRF 178

Query: 242 GD 243
           GD
Sbjct: 179 GD 180


>gi|160942759|ref|ZP_02090000.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445924|gb|EDP22927.1| hypothetical protein FAEPRAM212_00236 [Faecalibacterium prausnitzii
           M21/2]
          Length = 247

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 16/248 (6%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           +  R F              G   H+LA V+R K GD ++L +G   E+ + I+  G   
Sbjct: 1   MPHRYFTTE--ISDGTATLRGADAHHLARVMRAKPGDTVILCDGNAVEYTATITGFGEDR 58

Query: 65  IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
           + F VE    S  +   +V  +    K ++L+ +I+  VE+G   I P  +RY     + 
Sbjct: 59  VDFAVEPGYPSAAEPTVEVTLLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178
                +R     + AA+QC    LP +  P      + +++     ++F  E CG     
Sbjct: 119 EEQKNERYNRIALEAAKQCGRGVLPDVALPLPNFGAVCRSFAQYDLVLFCYE-CGGAPLR 177

Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + L            +AI+ G EGG+ +E +  + +      + LGPRILR +TA +A +
Sbjct: 178 QLLADAKPADGQKLRLAIVTGAEGGFAAE-EAEMAAKAGAKTVGLGPRILRCETAPLAVL 236

Query: 235 ALVQAICG 242
           + V  + G
Sbjct: 237 SAVMILTG 244


>gi|238651023|ref|YP_002916879.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str.
           Rustic]
 gi|238625121|gb|ACR47827.1| 16S rRNA m3U1498 methyltransferase [Rickettsia peacockii str.
           Rustic]
          Length = 244

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           MK +    R++++  L   ++ + + D   HY+  VLR+K  D + LFN  DGE+L++I+
Sbjct: 1   MKYN----RIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNSTDGEFLAQIN 56

Query: 60  YVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
            +GK+ +  +++ Q +    +S +    + IK ++L   I  + ++G+  I P+ITR+ Q
Sbjct: 57  DIGKNNLSVRLKEQLKKPYTESTLTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQ 116

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
               N++R+    I A EQ + LT P I    T++  LK   +   +++A+E    ENS+
Sbjct: 117 FRSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLKKNKN--LMLYANEHEKEENSI 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            ++ +     ++ I++GPEGG+ ++E E L S      + LG  ILR
Sbjct: 175 LRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSIILGSNILR 221


>gi|323483784|ref|ZP_08089163.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323402869|gb|EGA95188.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 245

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 102/250 (40%), Gaps = 28/250 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   FV+     +     +G   +++ +VLRMK G+ +L+     G++L     + +   
Sbjct: 1   MYHFFVEQEQIGEGVIAVTGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKI 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
               +E         + +       K ++++ +IQK+VE+G   I PV T+       ++
Sbjct: 61  LFGILEKSESEMELPARIHLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                + R    + SAA+Q     +P +      +  L+   D   +++  +   G E +
Sbjct: 121 KEEARIKRWNAISESAAKQSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEET 180

Query: 178 LEKLHAIAHIPNVAILI-------GPEGGYHSEEKETLHSLP--FVTPLSLGPRILRSDT 228
              L       ++AI I                 +E +       V+P+SLG RILR++T
Sbjct: 181 RRLLQTAEAGMDIAIFIGPEGGFE----------EEEIRQAGERGVSPVSLGRRILRTET 230

Query: 229 AAVAAMALVQ 238
           A +  ++ + 
Sbjct: 231 AGLCVLSALM 240


>gi|258511960|ref|YP_003185394.1| hypothetical protein Aaci_1993 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478686|gb|ACV59005.1| protein of unknown function DUF558 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 250

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 11/247 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           L RLF+D  +    +    G+  H+ + VLR + G+ +L+ +  +G + ++I+ V    I
Sbjct: 2   LPRLFLDVHVDEGARVWVGGEDGHHFSRVLRARPGE-VLVASAANGPFWAEIAEVRPGEI 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------- 118
              +  ++ S   +     +    K  ++D ++QK  E+G           +        
Sbjct: 61  CVHLRERAPSNEPKQRFVLVQGLAKGEKMDTILQKCTEVGAWGFVVFEAERSVVRLSGAA 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSEN 176
                + R R     AA Q     +PF+    +    L     +    ++  DE   +  
Sbjct: 121 KVEQKLARWRKVVREAAMQAQRDVVPFVAWAPSFAASLVALTEHGVDHVLVLDEEERANG 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L  + A       A+++GPEGG    E+           ++LGPRILR++TA   A+A+
Sbjct: 181 ILSAIRANEAGSRTAVVVGPEGGLGHGERRMAKQDARCQTVTLGPRILRTETAGAVALAI 240

Query: 237 VQAICGD 243
             A  GD
Sbjct: 241 ALAEWGD 247


>gi|331002887|ref|ZP_08326400.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413180|gb|EGG92554.1| hypothetical protein HMPREF0491_01262 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 245

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 110/255 (43%), Gaps = 29/255 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           +   FVD            G   +++ +VLRMK G+ +L+    + ++L KI  +    +
Sbjct: 1   MYHFFVDEDQISGEYAYIKGSDVNHIVNVLRMKPGEELLISVKGEWDYLCKIEEIENDRV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             KV      +    ++  +    K+++L+ +IQK++E+G+  I PV T+        + 
Sbjct: 61  NLKVLESMEQRELPVNITLLQGIPKSDKLEMIIQKAIELGVSEIIPVKTKRVVVKIEEKK 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178
               + R      SAA+Q     +P +  P +++  L+   D   +++  +   G E + 
Sbjct: 121 QASKVARWNAIAESAAKQSKRSIIPKVSEPKSIDNALEIVKDFGVKLIPYENADGIEKTR 180

Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           + L+ +    N+A+ I                     E ++   F   ++LG RILR++T
Sbjct: 181 KILNGMDKTKNIAVFIGPEGGFEEEE----------VEKINKSGF-EVITLGKRILRTET 229

Query: 229 AAVAAMALVQAICGD 243
           A +A ++ +     D
Sbjct: 230 AGLALLSNIMIRLED 244


>gi|86607114|ref|YP_475877.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp.
           JA-3-3Ab]
 gi|86555656|gb|ABD00614.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 272

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 8/229 (3%)

Query: 5   SHLKRLFVDFPLC-IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           S L RL +D          + +G Q HYL  V R+K GD  L+ +G    WL+     G 
Sbjct: 11  SSLPRLAIDPAQRDAGGVLRLTGPQEHYLQRVRRLKPGDPFLVLDGSGKLWLAHWQPQGS 70

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
            +  +VE   R       +    + +K    D + ++  E+G   I P++T  T  +   
Sbjct: 71  QVMGEVEALPR--ELPVYLHLGLAVVKGPGFDEVFRQVTELGAARITPLLTERTVVEPGW 128

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN--CQIVFADETCGSENSLE 179
              +R +     AAEQC+ L  P + PPT     L     +     V  +       +L 
Sbjct: 129 GRRERWQKIVQEAAEQCERLRWPQVDPPTPWTSWLAELKADWWGIAVARENAPLLLQALP 188

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           KL      P +A+ IGPEGG+   E+    +   V P+SLG  ILRS T
Sbjct: 189 KLRLSERDPVLAVAIGPEGGWTEAERRQAEAHGGV-PVSLGTTILRSTT 236


>gi|290581320|ref|YP_003485712.1| hypothetical protein SmuNN2025_1794 [Streptococcus mutans NN2025]
 gi|254998219|dbj|BAH88820.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 247

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV+             D   ++ +V+R+ E D ++L      + L++++ V +   
Sbjct: 1   MQQYFVNGKASKLVTIT-DKDTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHTF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+  S +      V       K ++L+++ QK+ E+G  A+        V+   ++  
Sbjct: 60  EIVDELSDNVELPVQVVIASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SEN 176
               D++      AAEQ     +P +         L       +I  A E       S  
Sbjct: 120 LKKADKLTKIAQGAAEQSKRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  ++    +  + GPEGG    E         V  + LGPRI+R++TA + A++ 
Sbjct: 180 LARELAQLSAGQQILFIFGPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALSS 238

Query: 237 VQAIC 241
           +  + 
Sbjct: 239 ISYVL 243


>gi|238927383|ref|ZP_04659143.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC
           43531]
 gi|238884665|gb|EEQ48303.1| protein of hypothetical function DUF558 [Selenomonas flueggei ATCC
           43531]
          Length = 247

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 116/247 (46%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++++F    L    +   +G   H+LAHV+R + GD I + + +       ++ + +  +
Sbjct: 1   MRQVFYSSTLT--EEIVITGGDAHHLAHVMRTQIGDVITVVDAEGQAAEMVVTALTRDAV 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
            F+++    ++T   +V  + + +K  ++D+++QK+ E+G   + P++T +       + 
Sbjct: 59  HFRMQRVLPAETAGREVILVQALLKGEKMDFIVQKAAELGAVCMCPIVTEHIVVRYDAKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD----HNCQIVFADETCGSE 175
                 R +     AA+QC   +L  + P  +L  LL++       +    F  E    +
Sbjct: 119 AAAKAARWQKIADEAAKQCGRRSLMTVAPIVSLAELLQDPAYIGAADTVTAFCYEQEERQ 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +    L        V +++G EGG+   E   + +      +SLG RILR++TA++ A+A
Sbjct: 179 SMRAVLRG-TEARRVTLIVGAEGGFSPAEAAAVTAAGG-QSVSLGHRILRAETASLTALA 236

Query: 236 LVQAICG 242
           + Q   G
Sbjct: 237 VTQYELG 243


>gi|325284031|ref|YP_004256572.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
           proteolyticus MRP]
 gi|324315840|gb|ADY26955.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
           proteolyticus MRP]
          Length = 236

 Score =  198 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 20/243 (8%)

Query: 6   HLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
            L R+ V      L    +   +G +  +L  V+R+  GD +L+F+G+  E  ++++ + 
Sbjct: 2   RLTRIRVPELPADLEAGPELVLTGGEVRHLG-VMRLGAGDPLLVFDGRGREARAEVTALD 60

Query: 63  --KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
             ++    VE    +      V    + +K ++L  +++ + E+G+  I+ ++T++    
Sbjct: 61  GLRATLRLVEELPGTPETPQPVTLAVALLKGDKLADVVRAATELGVARIQLLVTQHADVR 120

Query: 121 HY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 + R+      A++Q      P + PP  L  L   W+    +            
Sbjct: 121 DIGANKLARLNRVAAEASKQSRRAVTPEVLPPVPLAAL--TWEGQAYVAHPYVH------ 172

Query: 178 LEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + L +  H  + V +L GPEGG+   E E L S      + LGPRILR++TA +A +  
Sbjct: 173 -DLLSSHLHWDSPVTLLTGPEGGFSESEMEALLSRG-AQGVVLGPRILRAETAPLALLGA 230

Query: 237 VQA 239
           + A
Sbjct: 231 IAA 233


>gi|329116137|ref|ZP_08244854.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD
           2020]
 gi|326906542|gb|EGE53456.1| RNA methyltransferase, RsmE family [Streptococcus parauberis NCFD
           2020]
          Length = 247

 Score =  198 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F+              D   ++  V+R+ +GD ++L      ++L+K+        
Sbjct: 1   MQQYFISGAAQPLVTIT-DKDTIKHMFQVMRLGDGDQVVLVFDDGIKYLAKVVDGAAYQL 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             V+    +      V       K ++LD++ QK  E+G  A+        V+    +  
Sbjct: 60  EIVQDLGENLELPVQVTIASGFPKGDKLDFITQKVTELGAEALWAYPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               +++    + AAEQ     +P I         +       +I+ A E    E     
Sbjct: 120 AKKEEKLAKIALGAAEQSKRNKVPEIKLFEKKADFIGQLAEFDKILIAYEESAKEGEKSA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               L        V  + GPEGG   +E E          + LGPRI+R++TA + A++ 
Sbjct: 180 LARALATCQTGQKVLFIFGPEGGISPKEIEIFEEAGGFK-IGLGPRIMRTETAPLYALSA 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|303256695|ref|ZP_07342709.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47]
 gi|330999335|ref|ZP_08323052.1| putative 16S rRNA methyltransferase RsmE [Parasutterella
           excrementihominis YIT 11859]
 gi|302860186|gb|EFL83263.1| 16S rRNA methyltransferase RsmE [Burkholderiales bacterium 1_1_47]
 gi|329575193|gb|EGG56744.1| putative 16S rRNA methyltransferase RsmE [Parasutterella
           excrementihominis YIT 11859]
          Length = 236

 Score =  198 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 19/246 (7%)

Query: 7   LKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           + R +  F     +       +  H+   VLRM++GD + +FNGK       I +     
Sbjct: 1   MPRFYYFFESADTEAPLVLPPEAVHHAMRVLRMRQGDAVEVFNGKGCAVKGTIRFATDFA 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQN 119
              +  +   Q +   +  + + +   ++D++I+K+ E+G   I    +         + 
Sbjct: 61  EV-IPQEVIMQPRGLKLVLMQALVANEKMDWIIEKACELGYAEIAVFPSERGEVRLTCEK 119

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R     +SA +QC    LP I   ++L+    + +    ++         + + 
Sbjct: 120 AVKRVERWNKIAVSACQQCGENYLPNIRFCSSLKDAAAHAEGLKFVL---------SPIG 170

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           K +     P  V   +GPEGG   +E  TL    F +   LG R+LR++TAA+AA +  Q
Sbjct: 171 KTYDSPDTPTAVTFAVGPEGGLSPKEINTLIESGFYS-CKLGNRVLRTETAALAAASFAQ 229

Query: 239 AICGDW 244
            + GD+
Sbjct: 230 TLWGDF 235


>gi|222529537|ref|YP_002573419.1| hypothetical protein Athe_1548 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456384|gb|ACM60646.1| protein of unknown function DUF558 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 243

 Score =  198 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 31/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   FV+           +  +  +++  VLR +EGD I L +G + ++ S+I  + K  
Sbjct: 1   MPIFFVEKQNIENNIAYITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKDR 59

Query: 65  IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E ++ +  +   ++      IK  ++D+++QK+ E+G+  I PV+++      ++
Sbjct: 60  IKLLIESKTLNDRESIKNIFLFQCIIKNQKMDFIVQKATELGVKTIVPVVSKRVVIDISE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     A +QC     P I  P  +  + + +     I+F      SE S 
Sbjct: 120 KQEKKVERWRKIAQEAQKQCLRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS- 178

Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +    +   N+ ILI                     E L +   V  +SLG RILRS+T
Sbjct: 179 -EWCISSDYNNIGILIGPEGGFEEEE----------IEELKTFKNVQVISLGKRILRSET 227

Query: 229 AAVAAMALVQAICG 242
           A++AA++++    G
Sbjct: 228 ASIAALSILMHEVG 241


>gi|295102912|emb|CBL00457.1| RNA methyltransferase, RsmE family [Faecalibacterium prausnitzii
           L2-6]
          Length = 247

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 16/248 (6%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           +  R F              G   H+L+ V+R + GD ++L +G   E+ + I+  G   
Sbjct: 1   MPHRYFTTE--ISDGTAVLRGADAHHLSRVMRGRLGDTVILCDGSAVEYTATITGFGDET 58

Query: 65  IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
           + F VE    S  +   DV  +    K ++L+ +I+  VE+G     P  +RY     + 
Sbjct: 59  VEFSVEPGCPSAAEPTVDVTLLVGYPKQDKLEQVIRHGVELGCDHFIPFFSRYCVAAPKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178
                +R       AA+QC    LP +  P      + ++ D    ++F  E CG     
Sbjct: 119 EEQKNERYNRIAFEAAKQCGRGILPDVALPLPNFGAVCRSLDQYDLVLFCYE-CGGAPLR 177

Query: 179 EKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + L            +AI+ G EGG+ +E +  + +      + LGPRILR +TA +A +
Sbjct: 178 QLLAEATPADGEKLKIAIITGAEGGFAAE-EAEMAAKAGAKTVGLGPRILRCETAPLAVV 236

Query: 235 ALVQAICG 242
           + V  + G
Sbjct: 237 SAVMTLTG 244


>gi|225550485|ref|ZP_03771434.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225379639|gb|EEH02001.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 234

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 4/230 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        +        H++ +V+RM+  D I++ N +   ++++I  +     
Sbjct: 1   MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDEIIVIN-ETQAFIAEIINLEPLHA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125
             ++         + +    + IK N  ++++QK+ E+G+ +I   I + T  +T    +
Sbjct: 58  TIIKPYFNDCELSTKIDLFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNN 117

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+ T    A EQ     L   Y   +   LLK   +   I+ A E        +     +
Sbjct: 118 RISTIIKEACEQARRNYLVNYYEQFSFSELLKVLLNYDLILVAYENEKQFFLNDVFKENS 177

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +A++IGPEGG+  EE   L  +  V  +SL   ILRS+TA++  +A
Sbjct: 178 TYQKIALVIGPEGGFEQEEIALLKKINNVACISLTKTILRSETASLYLLA 227


>gi|149927712|ref|ZP_01915964.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105]
 gi|149823538|gb|EDM82768.1| hypothetical protein LMED105_15943 [Limnobacter sp. MED105]
          Length = 258

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 113/250 (45%), Gaps = 18/250 (7%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R  ++    +      S D  HY + VLR++EG+ + ++NGK  E+ + I Y  K  
Sbjct: 8   RLPRFLLEHCNSVGQVLDLSDDLMHYASRVLRLREGEALRVWNGKGCEYHATIHYASKKL 67

Query: 65  --IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             I+   +   R+      V  + +  + +++D++++K  E+G+    PV  + +     
Sbjct: 68  AQIQVGEQLALRNTELNRPVHVLQALPEGDKMDWVLEKCTELGVAGFHPVQAQRSVVKLE 127

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETC 172
            +  +          ++A+ Q +   +  + P  TL   L++    W +   + F   T 
Sbjct: 128 GERANKRQAHWERVVLAASLQSERGQMAQVEPVRTLSAALEHVALIWPNAHVLWF---TP 184

Query: 173 GSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            +E +L K    A     + I +GPEGG+  EE +    L    PL+   R+LR++T AV
Sbjct: 185 QAELALRKWTPQANPGEPLIICVGPEGGWSPEETDAATQLG-ALPLNFSQRVLRTETFAV 243

Query: 232 AAMALVQAIC 241
           A  A + A+ 
Sbjct: 244 ACTAQLTALL 253


>gi|171920821|ref|ZP_02931998.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188024285|ref|ZP_02996977.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188518636|ref|ZP_03004077.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524480|ref|ZP_03004487.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195867650|ref|ZP_03079652.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198273733|ref|ZP_03206268.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|209554158|ref|YP_002284700.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225551384|ref|ZP_03772330.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|171903589|gb|EDT49878.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|188018957|gb|EDU56997.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188997757|gb|EDU66854.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659714|gb|EDX53094.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660707|gb|EDX53962.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198249761|gb|EDY74542.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|209541659|gb|ACI59888.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225379199|gb|EEH01564.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
          Length = 234

 Score =  198 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 4/230 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        +        H++ +V+RM+  D I++ N +   ++++I  +     
Sbjct: 1   MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDEIIVIN-ETQAFIAEIINLEPLHA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125
             ++         + +    + IK N  ++++QK+ E+G+ +I   I + T  +T    +
Sbjct: 58  TIIKPYFNDCELSTKIDLFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNN 117

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+ T    A EQ     L   Y   +   LLK   +   I+ A E        +     +
Sbjct: 118 RISTIIKEACEQARRNYLVNYYEQFSFSELLKVLLNYDLILVAYENEKQIFLNDIFKENS 177

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +A++IGPEGG+  EE   L  +  V  +SL   ILRS+TA++  +A
Sbjct: 178 TYQKIALVIGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227


>gi|325270090|ref|ZP_08136697.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324987391|gb|EGC19367.1| RsmE family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 259

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 104/252 (41%), Gaps = 27/252 (10%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +V     +    +   ++  +   VLR+KEGD + L +G+   + ++++          
Sbjct: 7   FYVPDAAAVN---ELPAEEAVHALRVLRLKEGDELFLMDGEGCFYRAEVALATTKKCIYA 63

Query: 70  EYQSRSQTKQSD--VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             Q+  QT+     +    +P K   R+++M +K+ E+G   +  +  ++++      DR
Sbjct: 64  IRQTLRQTRAWRGRIHLAIAPTKDMGRMEWMAEKATEVGFDVLSFLDCKFSERKTLRTDR 123

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLEKLHAI 184
           +    ISA +Q      P + P  +    +++   N +  I          +    +  +
Sbjct: 124 IEKIVISAVKQSRKGWKPAVNPMMSFRSFIEHCPDNGRKYICHCYPEISRADFFSAVSCV 183

Query: 185 AH------------------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +                     ++ +LIGPEG +  +E     +  F + ++LG   LR+
Sbjct: 184 SPAVRSSQDRRQTDADTPSSAEDLTVLIGPEGDFSIDEVRLAMAHGFES-VTLGNSRLRT 242

Query: 227 DTAAVAAMALVQ 238
           +TA ++A+ + Q
Sbjct: 243 ETAGLSAVMMSQ 254


>gi|153854414|ref|ZP_01995692.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814]
 gi|149752940|gb|EDM62871.1| hypothetical protein DORLON_01687 [Dorea longicatena DSM 13814]
          Length = 245

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 30/254 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS 64
           ++  FV      + +    G   +++ +VLRMK G+ + + +G+  ++L  +       +
Sbjct: 1   MQHFFVSPEQVKEGKIYVEGGDVNHMKNVLRMKTGEELTVNDGEGSQYLCAVESYEADMA 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
           +   +  +       S +       K ++++ ++QKSVE+G   + PV T+         
Sbjct: 61  VLKILGKKQDESELASKIYLFQGLPKQDKMELIVQKSVELGAYQVIPVATKRAVVKLDAK 120

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENS 177
                ++R +   +SAA+Q     +P +    T    LK  +  +  ++  +   G E +
Sbjct: 121 KAKKKVERWQQIAVSAAKQAGRGIIPEVGEVCTYAQALKQAEELDVVLIPYELEKGMEET 180

Query: 178 LEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            + +  I    +V I I                               P++LG RILR++
Sbjct: 181 KQIIAGIRPGQSVGIFIGPEGGFEEEE----------VALAMKTG-ANPVTLGKRILRTE 229

Query: 228 TAAVAAMALVQAIC 241
           TA +  ++++    
Sbjct: 230 TAGLTMLSVLMFHL 243


>gi|189347656|ref|YP_001944185.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium limicola DSM
           245]
 gi|189341803|gb|ACD91206.1| protein of unknown function DUF558 [Chlorobium limicola DSM 245]
          Length = 248

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 10  LFVDFPLCIKTQ---GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           LF   P  I  +       GD+YH+L  VLR K  + I + +G    +   I+ + KS+ 
Sbjct: 3   LFYALPGQIDRKAGLVMLDGDEYHHLVRVLRKKRNECIAVTDGTGTHFDVCITAIEKSVL 62

Query: 67  FKVEYQSRSQTKQ-SDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                  R   +  + V    S +K   R +  ++K+ E+G+ A+ P+IT  T       
Sbjct: 63  SGTITAERPVARSATTVTVALSLLKAPPRFELFLEKATELGVSAVIPMITARTVAQPSGD 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +T  +SAA Q     LP I  P     ++    ++ +++  + +  + + +
Sbjct: 123 RIAKRLIRWKTIILSAARQSGRYYLPDIIEPLPFGKVIGLSGYDRKLIPYERSPHTASDV 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     N+  LIG EGG+ +EE        F T +S G  +LR++TA + A+++V+
Sbjct: 183 RC-----TGGNLLFLIGGEGGFTAEEVLQARDAGF-TEISFGRSVLRAETAGIFAVSMVR 236

Query: 239 AIC 241
           A  
Sbjct: 237 ARL 239


>gi|185179060|ref|ZP_02964799.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|184209047|gb|EDU06090.1| RNA methyltransferase, RsmE family [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
          Length = 234

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 4/230 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        +        H++ +V+RM+  D I++ N +   ++++I  +     
Sbjct: 1   MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDEIIVIN-ETQAFIAEIINLEPLHA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125
             ++         + +    + IK N  ++++QK+ E+G+ +I   I + T  +T    +
Sbjct: 58  TIIKPYFNDCELSTKIDLFQASIKPNNFEWIVQKACELGINSIYQTIFKRTYNSTLIKNN 117

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+ T    A EQ     L   Y   +   LLK       I+ A E        +     +
Sbjct: 118 RISTIIKEACEQARRNYLVNYYEQFSFSELLKVLLSYDLILVAYENEKQIFLNDIFKENS 177

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +A++IGPEGG+  EE   L  +  V  +SL   ILRS+TA++  +A
Sbjct: 178 TYQKIALVIGPEGGFEQEEIALLKKINNVVCISLTKTILRSETASLYLLA 227


>gi|332638183|ref|ZP_08417046.1| hypothetical protein WcibK1_05770 [Weissella cibaria KACC 11862]
          Length = 248

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 13/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL-LFNGKDGEWLSKISYVGKSI 65
           ++R F+        +     D  H+L  VLR K G     ++  ++   ++K+S +G  +
Sbjct: 1   MQRYFL-TETPETDEFDLPADIAHHLMTVLRGKVGTMAEFVYPDRETMVVAKVSEIGDDV 59

Query: 66  R--FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
                VE    +         I    K ++ + ++QK+ E+G+  I  V T ++      
Sbjct: 60  TRMTVVERVEANVELPVQATLILGLAKGDKPELVVQKATELGVHHIIFVETDWSVVHWGM 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R+      AAEQ   LT+P +     L   L   +   +IV  +E+     + 
Sbjct: 120 KADKKIARLAKIAQGAAEQSHRLTVPDVQYLPNL-QALTLPEAMIKIVAWEESAKQGEAA 178

Query: 179 ---EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              ++   +     VA L+GPEGG    E E L          LGPRILR++TA + A++
Sbjct: 179 MLAQQFAQLRSGDEVAFLVGPEGGLKEAELELLTEKFGFVAAGLGPRILRAETAPLYALS 238

Query: 236 LVQAIC 241
            +    
Sbjct: 239 ALSFAL 244


>gi|170017331|ref|YP_001728250.1| hypothetical protein LCK_00979 [Leuconostoc citreum KM20]
 gi|169804188|gb|ACA82806.1| DUF558 domain-containing protein [Leuconostoc citreum KM20]
          Length = 245

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R F++  +  +    ++   + +   VLR + G      +      ++++  +  +S+
Sbjct: 1   MQRYFLNETITDEINLASNQSIFKHFGKVLRARVGTQAEFVDNNRRVVIAEVVTITPESM 60

Query: 66  RFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN 119
             KV    S       ++  + SP+K +R D+ +QK+ E+G+  I        +T + + 
Sbjct: 61  HLKVINTISAEAELPLEISVVVSPLKNDRSDWFVQKATELGVHHIIFTNMARTVTDWHKQ 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
                 R +    +AAEQ   L +P +      + ++     N  +V  +E+     S N
Sbjct: 121 QDKKQLRFQKIAQAAAEQAHRLMVPTV-QFIDWQAMIAQ-PKNLGLVAWEESARAGESAN 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++ +    H   + +L GPEGG  + E   L +  F++   LGPRILR++TA + A++ 
Sbjct: 179 LVQTIREAPHGAKIVLLFGPEGGLTTSEVTELTTSHFISA-GLGPRILRAETAPLYALSA 237

Query: 237 VQAI 240
           +  +
Sbjct: 238 ISVL 241


>gi|222152424|ref|YP_002561599.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus uberis
           0140J]
 gi|222113235|emb|CAR40735.1| conserved hypothetical protein [Streptococcus uberis 0140J]
          Length = 247

 Score =  197 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 96/245 (39%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F++     + Q     +   ++  V+R+ E D++++      + L+K+      + 
Sbjct: 1   MQQYFMNSQAQSQFQVT-DRETLKHMFQVMRLSEDDHVVIVFSDHRKRLAKVLDSQNHLF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120
             VE    +      V       K ++LD + QK+ E+G  AI      ++         
Sbjct: 60  EIVEELDDNVELPVQVTIASGFPKADKLDLVTQKATELGAHAIWSFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               +++    + AAEQ     +P +         L    H  +I  A E    +     
Sbjct: 120 AKKAEKLEKIALGAAEQSKRNLVPEVVLFERKVDFLAELSHFDKIFIAYEESAKDGEKAA 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L ++     +  + GPEGG   +E         +  + LGPRI+R++TA + A++ 
Sbjct: 180 LAKALSSLKKGDKILFIFGPEGGISPKEIALFEGAGAIK-VGLGPRIMRTETAPLYALSA 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|313114748|ref|ZP_07800250.1| RNA methyltransferase, RsmE family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622973|gb|EFQ06426.1| RNA methyltransferase, RsmE family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 247

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 16/248 (6%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +  R F              G   H+LA V+R + GD ++L +G   E+ + I+  G   
Sbjct: 1   MPHRYFTTE--ISDGTATLRGADAHHLARVMRARLGDTVILCDGNAVEYTATITGFGDEC 58

Query: 66  R-FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
             F+VE    S  + S +V  +    K ++L+ +I+  VE+G   I P  +RY     + 
Sbjct: 59  VEFRVEPGYPSAAEPSVEVTLLAGYPKQDKLEQIIKHGVELGAAHIVPFFSRYCVAAPKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                +R     + AA+QC    LP +  P      + + +     ++F  E CG     
Sbjct: 119 EEQKNERYNRIAVEAAKQCGRGVLPDVALPLANFGAVCRTFAQYDLVLFCYE-CGGAPLR 177

Query: 179 EKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           + L A     +    +AI+ G EGG+ +E +  + +      + LGPRILR +TA +A +
Sbjct: 178 DLLAAAKPADDEKLKIAIVTGAEGGFAAE-EAEMAAKAGARTVGLGPRILRCETAPLAVL 236

Query: 235 ALVQAICG 242
           A V  + G
Sbjct: 237 ASVMTLTG 244


>gi|312127404|ref|YP_003992278.1| hypothetical protein Calhy_1189 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777423|gb|ADQ06909.1| protein of unknown function DUF558 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 243

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 31/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   FV+           +  +  +++  VLR +EGD I L +G + ++ S+I  V K  
Sbjct: 1   MPIFFVEKQNIENDIAYITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRILEVSKDR 59

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E ++ +  + + ++      IK  ++D+++QK+ E+G+  I PV+++      ++
Sbjct: 60  IKLLIESKTLNDRESTKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     A +QC     P I  P  +  + + +     I+F      SE S 
Sbjct: 120 KQEKKVERWRKIAQEAQKQCLRPIPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS- 178

Query: 179 EKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +    +   N+ ILI                     E L +   V  +SLG RILRS+T
Sbjct: 179 -EWCISSDYNNIGILIGPEGGFEEEE----------IEELKTFKNVQVISLGKRILRSET 227

Query: 229 AAVAAMALVQAICG 242
           A++AA++++    G
Sbjct: 228 ASIAALSILMHEVG 241


>gi|222097756|ref|YP_002531813.1| 16S ribosomal RNA methyltransferase rsme [Bacillus cereus Q1]
 gi|221241814|gb|ACM14524.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 218

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 14/216 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           M  GD+I          +  I  +         VE+   S      V       K ++L+
Sbjct: 1   MSAGDHIYCCV-NGKTAVCSIDEITSEFINTAIVEWVETSSELPVFVTIASGLPKGDKLE 59

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
            + QK  E+G  A  P     +      +     ++R+R     AAEQ     +P ++ P
Sbjct: 60  LIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAP 119

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
            + + LL         + A E    +    N  + L  +     + I+ GPEGG   EE 
Sbjct: 120 ASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEI 179

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             L    FV P SLGPRILR++TA + A++      
Sbjct: 180 TALREHKFV-PCSLGPRILRTETAPLYALSAASYHF 214


>gi|24380387|ref|NP_722342.1| 16S ribosomal RNA methyltransferase RsmE [Streptococcus mutans
           UA159]
 gi|24378409|gb|AAN59648.1|AE015027_6 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 247

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ FV+           +  D   ++ +V+R+ E D ++L      + L++++ V +  
Sbjct: 1   MQQYFVNGK--ADKLVTITDKDTIKHMFNVMRLTEDDEVVLVFDDGIKRLARVTNVQEHT 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              V+  S +      V       K ++L+++ QK+ E+G  A+        V+   ++ 
Sbjct: 59  FEIVDELSDNVELPVQVVIASGFPKGDKLEFLAQKTTELGAHALWAFPADWSVVKWDSKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG----SE 175
                D++      AAEQ     +P +         L       +I  A E       S 
Sbjct: 119 LLKKADKLTKIAQGAAEQSKRNIIPQVKFFEKKSDFLTQLAVFNKIFVAYEESAKIGESA 178

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +L  ++    +  + GPEGG    E         V  + LGPRI+R++TA + A++
Sbjct: 179 ALARELAQLSADQQILFIFGPEGGLSPAEIAAFEKAGAVK-VGLGPRIMRTETAPLFALS 237

Query: 236 LVQAIC 241
            +  + 
Sbjct: 238 SISYVL 243


>gi|313157414|gb|EFR56837.1| RNA methyltransferase, RsmE family [Alistipes sp. HGB5]
          Length = 237

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++  +   P         S ++  +   VLR+  GD + + +G+   +  +I+    K  
Sbjct: 1   MQLFY--APDITPPLHTLSEEESKHCVRVLRLGRGDTLHITDGRGNLFCCEITDDNPKRC 58

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
             +V E ++  +     +    +P K  +R ++ ++K+ E+G+G I P+ T + +   + 
Sbjct: 59  TVRVTETRAGWEALPYSLTMAVAPTKNADRFEWFLEKATEVGVGTIIPLETEHCERRVFK 118

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R      +A +Q      P + P T             + +       S      L A
Sbjct: 119 PERGERVITAAMKQSLKAYRPTLRPLTPFGEAAAMPFEGRKFIAHCAPAQSPEGKAYLPA 178

Query: 184 -IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +       ILIGPEG +  EE     +  F   ++LG + LR++T
Sbjct: 179 TLRRGEAALILIGPEGDFSPEEIAFARANGFEE-ITLGAQRLRTET 223


>gi|323692756|ref|ZP_08106984.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323503198|gb|EGB19032.1| RsmE family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 245

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 101/250 (40%), Gaps = 28/250 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   FV+     +     +G   +++ +VLRMK G+ +L+     G++L     + +   
Sbjct: 1   MYHFFVEQEQIGEGVIAVTGPDVNHIKNVLRMKPGERVLISAKAGGDYLCVTKELAQDKI 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
               +E         + +       K ++++ +IQK+VE+G   I PV T+       ++
Sbjct: 61  LFGILEKSESEMELPARIHLFQGLPKGDKMELIIQKAVELGAFRIIPVETKRVVVKLDSK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENS 177
                + R    + SAA+Q     +P +      +  L+   D   +++  +   G E +
Sbjct: 121 KEEARIKRWNAISESAAKQSKRSIIPEVTGVVKYKDALQMAEDFGLKMIPYECAKGMEET 180

Query: 178 LEKLHAIAHIPNVAILI-------GPEGGYHSEEKETLHSLP--FVTPLSLGPRILRSDT 228
              L       ++AI I                 +E +       V+ +SLG RILR++T
Sbjct: 181 RRLLQTAEAGMDIAIFIGPEGGFE----------EEEIRQAGERGVSSVSLGRRILRTET 230

Query: 229 AAVAAMALVQ 238
           A +  ++ + 
Sbjct: 231 AGLCVLSALM 240


>gi|78186115|ref|YP_374158.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium luteolum DSM
           273]
 gi|78166017|gb|ABB23115.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 247

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 17/242 (7%)

Query: 10  LFVDFPLCIKT--QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
            +V       +       GD++H+L+ VLR KEG++I + +G        I+ VGK S+ 
Sbjct: 4   FYVPEGSVAASVRSLMIEGDEFHHLSRVLRKKEGEHIRVTDGSGLSLEVLITSVGKRSLE 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            ++  +S  +   + V    S +K   R D+ ++K+ E+G+  + P++T+ T      + 
Sbjct: 64  GEILARSVVERPATGVTVAISLLKAPARFDFFLEKATELGVSGVIPMMTQRTVSQPPRER 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               M+R R   +SAA Q     LP ++ P +    L    ++ +++   E  G    L+
Sbjct: 124 FKGRMERWRNIMLSAARQSGRFHLPVLHEPLSFREALGLKGYDLRLIP-YEGSGVVPELD 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                     V  LIG EGG+   E E      F   +S G  ILR+++A + A+ALV+ 
Sbjct: 183 F-----PGKKVLFLIGGEGGFTPGEVEAASETGF-REMSFGRSILRAESAGIFAVALVRT 236

Query: 240 IC 241
             
Sbjct: 237 RL 238


>gi|284055742|pdb|3KW2|A Chain A, Crystal Structure Of Probable Rrna-Methyltransferase From
           Porphyromonas Gingivalis
 gi|284055743|pdb|3KW2|B Chain B, Crystal Structure Of Probable Rrna-Methyltransferase From
           Porphyromonas Gingivalis
          Length = 257

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 9/231 (3%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQ 76
           I+   +   D+  ++  VLR + GD + L +G+   + + I     KS    V  Q   Q
Sbjct: 13  IEQSDRLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQ 72

Query: 77  -TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
              +  +    +P K + R ++ ++K VE+G+  +  + + +++      +R+    ISA
Sbjct: 73  KPWRDRITIAIAPTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISA 132

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-----IPN 189
            +Q    + P I     ++ ++ +       + A         + +             +
Sbjct: 133 XKQSLKASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 192

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           V ILIGPEG +   E E+     F  P+SLG   LR++TA + A   +  +
Sbjct: 193 VLILIGPEGDFSPSEVESALLAGFA-PVSLGESRLRTETAGLVACQWIHTL 242


>gi|325568307|ref|ZP_08144674.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325158076|gb|EGC70229.1| RsmE family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 251

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 13/247 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+  P   K     SG+ +H++  V+RM  G  + L        ++KI    +   
Sbjct: 1   MQRYFLQEPYEAKAVFAVSGEPFHHMIRVMRMTPGTKVGLVFEDHLAIIAKIKEADEETV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAI------RPVITRYTQ 118
           +  E +   Q K+  +Q   +    K ++LD ++QK  E+G  A         V+    +
Sbjct: 61  YLEEVEKEQQDKELPLQVTIASGYPKGDKLDLIVQKGTELGAAAFIGFPAQTSVVKWDQK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-- 176
                  R++     AAEQ      P I      +   ++      ++ A E    +   
Sbjct: 121 KLQKKQQRLQKIAQEAAEQSQRQIAPAITLLDNAKAFWQSLSQYDAVLVAYEESAKQGEA 180

Query: 177 --SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              L+ +  +     V  + GPEGG    E E            LGPRILR++TA    +
Sbjct: 181 AMLLQVITELPVGSKVLAIFGPEGGLAPSEIEGAQENN-AKLCGLGPRILRTETAPFYFL 239

Query: 235 ALVQAIC 241
           + V  + 
Sbjct: 240 SAVSVLT 246


>gi|159901854|gb|ABX10589.1| hypothetical protein 5H12_27 [uncultured planctomycete 5H12]
          Length = 239

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R F++         + SG+  H++ +V+RMK GD+++LF+G + E+   I+   K +   
Sbjct: 4   RFFINP--IATEICQISGESAHHIVNVMRMKTGDSVILFDGTNREFTGIITETDKKVVTI 61

Query: 69  VEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNM 124
                   +++  +      +  K +R  +MI+K VE+G+ ++ P+ T+ +       ++
Sbjct: 62  AIQSVIEVSREQKITSTLAVAFPKGDRQKFMIEKLVELGVDSLVPLQTQRSVVNVQPRSL 121

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           ++++ + + A++QC    L  I P  +    +       + V           L    AI
Sbjct: 122 EKIQRWIVEASKQCGRNQLMQIKPTVSFNDWIHGQREGPRFVAHPHDM----RLTITDAI 177

Query: 185 AHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                  ++   +GPEGG+ S+E     +  + T ++LG  ILR +T
Sbjct: 178 GQAQRAGVVSLTVGPEGGFTSQEIADAQNAGWST-IALGITILRIET 223


>gi|332978382|gb|EGK15104.1| 16S rRNA methyltransferase RsmE [Psychrobacter sp. 1501(2011)]
          Length = 305

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 41/269 (15%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQS 73
             + +    + D YH+   VLR K G+  L+F+G  G+ + ++  + K       V + +
Sbjct: 38  QPLGSILTLTEDIYHHWCRVLRAKVGEQSLIFDGLGGQSIVELESIDKKSAQVRIVAHDT 97

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRV 127
              T            + +R+DY IQK+ E+G  AI+ + +++ +           ++  
Sbjct: 98  DDNTTAYYSAIAIVMSRGDRMDYAIQKATELGATAIQLLTSQHGEVRLKANQVDKKLNHW 157

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----------------------CQI 165
           +   +SA EQC +   P +  P ++E  ++                             +
Sbjct: 158 QQVALSACEQCGLNRPPLVMSPVSIEQCIQQQGGEPHSDVSYLANDTYYQQYFNQPTLPL 217

Query: 166 VFADETCGSENSLEKLHAIA----------HIPNVAILIGPEGGYHSEEKETLHSLPFVT 215
           V A  +   +  L+   +I             P   ILIG EGG    E        ++ 
Sbjct: 218 VLAVPSQQEKQQLDINASIKRHFAQALQTPSKPRFDILIGAEGGLSESEYSQARDSDYL- 276

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDW 244
           P  LG R+LR++TA V A+A +  I  ++
Sbjct: 277 PWQLGNRVLRTETAPVVALATLMYISENF 305


>gi|238019341|ref|ZP_04599767.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748]
 gi|237864040|gb|EEP65330.1| hypothetical protein VEIDISOL_01205 [Veillonella dispar ATCC 17748]
          Length = 243

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGKDGEWLSKISYVGKS 64
           +K++F+  PL      +   D  H++ HV R      I +   + + G +      +   
Sbjct: 1   MKKIFIHTPL--DETIELPTDVTHHVLHVFRHNMEKPITVTGSDNRCGTYQIT-EEIDGK 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
            + K+     S         + S +K  +L++++QK+ E+ +  +  V T  +      +
Sbjct: 58  AQAKLIEYVESNVSSYRTILVQSLLKGEKLEWVLQKATELNIDTVYLVSTANSVAKYDDK 117

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS--EN 176
                  R     + AA+QC    LP +     L  +L+      ++V  +   G   ++
Sbjct: 118 KLQTKATRWEKIMLEAAQQCGRNQLPTLVVGEKLSQVLEIESDALKLVAYENEDGHTIKD 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L ++++   I ++ I IGPEGGY   E   +        +SLG  ILR++TAA+ ++A+
Sbjct: 178 VLSQVNSDESITDILICIGPEGGYQENEINAIIESGG-KSVSLGNTILRAETAAIGSLAM 236

Query: 237 VQAIC 241
           ++   
Sbjct: 237 IRYEL 241


>gi|87306779|ref|ZP_01088926.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM
           3645]
 gi|87290958|gb|EAQ82845.1| hypothetical protein DSM3645_10607 [Blastopirellula marina DSM
           3645]
          Length = 240

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF- 67
           R F++ P+      +  G + H+L HV+R K G  + LF+    ++ ++I  VG+     
Sbjct: 4   RFFLEAPIT-GDTVEIDGPEAHHLLHVMRAKIGAQVTLFDDSGAQFAAEIIAVGRKSATA 62

Query: 68  -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNM 124
             V  Q  S+     +    +  K +R  ++++K VE+G+  + P+ T  +       ++
Sbjct: 63  RVVARQEVSRELPISLTIAAALPKGDRQRWLVEKCVELGVTDLTPLDTERSVSLKKEKSL 122

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           D++R Y I A++QC+   L  I     L  F         +++   + C S   L     
Sbjct: 123 DKLRGYVIDASKQCERNRLMRIADSAALPAFWNHASLSAVRLIADPDACESVADLLP--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            A   +V + IGPEGG+  +E +   S  +     LG RILR +T
Sbjct: 180 -AEPTDVIVAIGPEGGFSPDEYQAALSAGW-RGFRLGKRILRIET 222


>gi|302759931|ref|XP_002963388.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii]
 gi|300168656|gb|EFJ35259.1| hypothetical protein SELMODRAFT_80724 [Selaginella moellendorffii]
          Length = 258

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 9/246 (3%)

Query: 3   IHSHLKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           + + L R + D  P    T  +  G ++ ++   LR+ +   + LFNG+ G   + +S V
Sbjct: 1   MATALPRFYCDSLPTSKGTAVEIDGQEFWHMTKALRLGQDQRVELFNGRGGIVTAAVSAV 60

Query: 62  GKSIRFKVEYQ------SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
            +S    V  +          ++   +   F+ +K  R D+M++K  E+G   + P+ T 
Sbjct: 61  RRSNVELVAVEDLCTLPPPVDSENWHLVAAFADLKGGRADWMVEKCTELGARTLTPLATE 120

Query: 116 YTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            +         R +   ++A +QC  L    +     +  L      +  +        +
Sbjct: 121 RSTGVCSNRSTRWKRVVLAATKQCQRLHSMELRESLNISSLKSQVSGSSHVSLLATAGAT 180

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           E       +   I    +++GPEG +  EEK  L +     P+ LG R LR +TAA+A +
Sbjct: 181 EIVEVFNDSSKDIRGGTLIVGPEGDFTEEEKYDLVAAG-AMPVGLGHRRLRVETAAIAML 239

Query: 235 ALVQAI 240
           A V  +
Sbjct: 240 ATVMMV 245


>gi|168701569|ref|ZP_02733846.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 237

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 14/224 (6%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           R ++   L    +   +G + H+L  V R  +GD +++FNG   ++ ++I   GK     
Sbjct: 4   RFYIPDLLGAG-EFVLTGPEAHHLVAVRRFGDGDEVVVFNGDGNDYPAQILSAGKKSVVL 62

Query: 69  VEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NM 124
           +  +    ++     V    +  K +R D++++K  E+G+    P+IT           +
Sbjct: 63  LVREPVFVNRELPFPVVVASALPKGDRADFLVEKLTELGVNRFIPLITTRAVVLPKVSVV 122

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           ++     I A++QC    L  +  P   +  +   D    +       G           
Sbjct: 123 EKFGRAVIEASKQCGRNCLMQVDAPQKWDSFVARADLPQPLTILHTGPGLVG-------- 174

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A      + +GPEGG+ +EE E   +  FV   SLG R+LR++T
Sbjct: 175 ASGAGGTLAVGPEGGFTTEEVERALTHGFVAR-SLGSRVLRTET 217


>gi|83591910|ref|YP_425662.1| 16S ribosomal RNA methyltransferase RsmE [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574824|gb|ABC21375.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 247

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/218 (37%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RL+VD PL      +  G Q HYL  V+R+  G  + LFNG+DGEWL+ +  +GK+  + 
Sbjct: 9   RLYVDAPLAAGLDVRLDGAQAHYLRDVMRLGPGAAVALFNGRDGEWLATLDTLGKAGAQA 68

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             +   R Q  +     +F+P+K    DY+++K+VE+G GA+ PV+TR TQ+     DR+
Sbjct: 69  VAQTLLRPQGDEDGPWLLFAPLKKEATDYLVEKAVELGCGALLPVMTRRTQSQKVRTDRL 128

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I AAEQC+ LTLP ++ P  L  +L++W    ++    E   +  +         +
Sbjct: 129 RAQVIGAAEQCERLTLPAVFEPRPLAKVLEDWPAERRLFVLAERRDALPAARAFAGARAL 188

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
              A+L+GPEGG   ++ + L +LP  TP+ LGPRILR
Sbjct: 189 -KAALLVGPEGGLDDKDLDALLALPSSTPVGLGPRILR 225


>gi|313901575|ref|ZP_07835017.1| protein of unknown function DUF558 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468164|gb|EFR63636.1| protein of unknown function DUF558 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 252

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 15/249 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
             +FVD  L        + D  H+L  VLR + GD ++        WL +++  G   + 
Sbjct: 4   PHVFVDRELAPGAAAPLAADDAHHLLRVLRRRPGDPVVAVTPAGRRWLGRLAP-GSPPQL 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN------TH 121
           +   +  S      V       K  +++ +I+   E+G+    PV+   + +        
Sbjct: 63  EAREELPSSEPPVAVTLGQGLPKGPKMEEVIRHGTEVGVARFVPVLAARSVSRPGEAGAA 122

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +     AA Q     +P + PP +L+ LL   +    I+   E   +    E+L
Sbjct: 123 QRVQRWQRIAREAARQSQRSAVPQVEPPCSLDGLLSRGEAWDLILMPWEEEEARGLREEL 182

Query: 182 H-------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                     A    V IL+GPEGG+ + E E          ++LGPRILR++TA V   
Sbjct: 183 EAAAAAWGRPAAGRRVLILVGPEGGWDAGEVEAARRAG-ARVVTLGPRILRTETAGVLVA 241

Query: 235 ALVQAICGD 243
            LV  + GD
Sbjct: 242 GLVLHVLGD 250


>gi|47504981|gb|AAT33657.1| conserved hypothetical protein TIGR00046 [Bacillus anthracis str.
           'Ames Ancestor']
          Length = 218

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 14/216 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           M  GD+I          +  I  +         VE+   S      V       K ++L+
Sbjct: 1   MSAGDHIYCCV-NGRTAVCSIDEITSEFINTAIVEWVEASSELPVFVTIASGLPKGDKLE 59

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
            + QK  E+G  A  P     +      +     ++R+R     AAEQ     +P ++ P
Sbjct: 60  LIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAP 119

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
            + + LL         + A E    +    N  + L  +     + I+ GPEGG   EE 
Sbjct: 120 ASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEI 179

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             L    FV P SLGPRILR++TA + A++      
Sbjct: 180 TVLREHNFV-PCSLGPRILRTETAPLYALSAASYHF 214


>gi|291295971|ref|YP_003507369.1| hypothetical protein Mrub_1587 [Meiothermus ruber DSM 1279]
 gi|290470930|gb|ADD28349.1| protein of unknown function DUF558 [Meiothermus ruber DSM 1279]
          Length = 232

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 21/247 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ H    R FV+    I+ Q +  G + H+L  VLR +EGD + +F+GK  E  +++  
Sbjct: 1   MRPH----RAFVE---SIQPQVELVGREAHHLLDVLRAREGDWLTVFDGKGLEGRARVLQ 53

Query: 61  VGKS-IRFKVEYQSR-SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
                +R +VE     S+     +    + +K + L  + + + E+G   I P++T++  
Sbjct: 54  TEPGWVRLQVEETWPASKEPPQPITLYVALLKGDHLAEVARAATELGASQIVPILTQHCV 113

Query: 118 --QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
             + +     R+    + AA+QC+   +P + P   L+ +          V    T    
Sbjct: 114 VRELSEAKRQRLERIVLEAAKQCERAVVPKVQPVLQLKLI---PPVEQGFVAQPRTQALL 170

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +              A+L GPEGG    E + L +  F TP++LGPRILR++TA VA ++
Sbjct: 171 H-----EHFDPSKPTALLTGPEGGLGEAEVQFLQARGF-TPVTLGPRILRAETAPVALLS 224

Query: 236 LVQAICG 242
           LV A  G
Sbjct: 225 LVTAAFG 231


>gi|124265393|ref|YP_001019397.1| 16S ribosomal RNA methyltransferase RsmE [Methylibium
           petroleiphilum PM1]
 gi|124258168|gb|ABM93162.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 245

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 13/232 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           + R  VD PL    +         +   VLR++ GD + LF+G+  EW +++  +G+S +
Sbjct: 1   MPRFLVDMPLADGLEAALPAAAARH-VQVLRLQPGDGLTLFDGRGSEWEARVVQMGRSEV 59

Query: 66  RFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           R +V   Q   +     +          R+D++++K+ E+G+  ++P++   +      +
Sbjct: 60  RVRVGASQPVDRELPLPITLAVGMPANERMDWLVEKATELGVSTLQPLVCERSVLRLGGE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSEN 176
                +   +    +AAEQC   TLP + P        +    +            G+  
Sbjct: 120 RADRKLAHWQGVASAAAEQCGRTTLPRLLPVRAFGEWQRALRPDVTEARFVLSLAEGTRP 179

Query: 177 SLEKLH-AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            +E L  A+     +  L GPEGG  + E     +   + P++LGPR+LR++
Sbjct: 180 FVEALPPALRAGQGLLFLSGPEGGLCNTEDAQARAAG-LQPITLGPRVLRAE 230


>gi|225016957|ref|ZP_03706149.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum
           DSM 5476]
 gi|224950271|gb|EEG31480.1| hypothetical protein CLOSTMETH_00872 [Clostridium methylpentosum
           DSM 5476]
          Length = 212

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 17/211 (8%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRL 94
           MK G+ I+L +GK  +   +IS +  +    VE + R +        ++   +  K ++ 
Sbjct: 1   MKAGEKIVLCDGKGVDCHGEISQITDN-EVIVEIRERVENKTEPSVHIRLYQAMPKGDKF 59

Query: 95  DYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYP 148
           + ++QKSVE+G+  I PV+T         ++    ++R       AA+Q     +P +  
Sbjct: 60  EQIVQKSVELGVFEIIPVLTARCISRPDAKSMRKKIERYNKIAYEAAKQSGRGRIPLVRE 119

Query: 149 PTTLEFLLKNWD--HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
               +  LK+        ++F +       +L      A    ++I IG EGG+   E E
Sbjct: 120 LLPFDQALKDASGREGETLLFYECGGQRIPAL----VDAGCSELSIFIGSEGGFEPSEVE 175

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                      SLG RILR +TA + A++++
Sbjct: 176 RAMEAG-AQIASLGSRILRCETAPLCALSVL 205


>gi|116618287|ref|YP_818658.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097134|gb|ABJ62285.1| hypothetical protein LEUM_1187 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 245

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI- 65
           ++R F++ P+    +  A  D + +   VLR + G      +      L +++ +   + 
Sbjct: 1   MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGEVTLIDYEVM 60

Query: 66  -RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN 119
               ++    +     DV  + SP+K +R D+ IQK+ E+G+  I        +  + + 
Sbjct: 61  NIKVIDRYYSNVELPIDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVADWRKQ 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               + R      +AAEQ   L +P I   T    +      N  +V  +E+     S  
Sbjct: 121 QEKKVKRFNKIAQAAAEQAHRLVVPEIIFTTWQNTI--QMPKNTGLVAWEESARDGESAA 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +  + A+     +  + GPEGG    E E L    F     LGPRILR++TA + AM+ 
Sbjct: 179 LIAAVSAVPSGEKLICVFGPEGGLTENEIEELRLQNFELA-GLGPRILRAETAPLYAMSA 237

Query: 237 VQAI 240
           +  +
Sbjct: 238 ISVL 241


>gi|239948513|ref|ZP_04700266.1| ribosomal RNA small subunit methyltransferase E [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922789|gb|EER22813.1| ribosomal RNA small subunit methyltransferase E [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 298

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 55/274 (20%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + +GD  HY+  VLR+K  D + +FNG DGE+L++I+ 
Sbjct: 1   MKYN----RIYINSRLAENSKLELAGDHVHYVKTVLRLKVNDGLRIFNGMDGEFLAQITD 56

Query: 61  VGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK ++  +++ Q +    +S +    S IK ++L   I  + ++G+  I P+ITR  Q 
Sbjct: 57  IGKHNLSVRLKEQLKKPYTESTLILAISIIKQDKLMLAINMATQLGITKIIPLITRRCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS-L 178
              N++R+    I A EQ + LT P I    T++  LK   +N  +++A+E    ENS L
Sbjct: 117 RSVNIERLTKCVIEATEQSERLTPPIIEKAITIQDYLK--KNNNLMLYANEHEKEENSIL 174

Query: 179 EKLHAIAHIPN-----------------------------------------------VA 191
             L ++++I +                                               + 
Sbjct: 175 RILSSLSNIYSCEMKRGYTKNNLEKSKESVSRGAERILIREHLRTYKDDVANFSSSSSIT 234

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           I++GPEGG+ ++E E L S      +SLG  ILR
Sbjct: 235 IIVGPEGGFTNDELELLASYKNTKSISLGSNILR 268


>gi|47567876|ref|ZP_00238584.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus
           G9241]
 gi|47555553|gb|EAL13896.1| conserved hypothetical protein protein TIGR00046 [Bacillus cereus
           G9241]
          Length = 218

 Score =  195 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 14/216 (6%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKS--IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           M  GD+I          +  I  +         VE+   S      V       K ++L+
Sbjct: 1   MSAGDHIYCCV-NGKTAVCSIDEITSEFINTAIVEWVEASSELPVFVTIASGLPKGDKLE 59

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
            + QK  E+G  A  P     +      +     ++R+R     AAEQ     +P ++ P
Sbjct: 60  LIFQKGTELGAAAFLPFQASRSIVKWDAKKADKKVERLRKIVKEAAEQSHRSEIPEVHAP 119

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
            + + LL         + A E    +    N  + L  +     + I+ GPEGG   EE 
Sbjct: 120 ASFKQLLSMSGEYDVCLVAYEEEAKQGEKSNFAKALTMMKPGQKLLIVFGPEGGLAEEEI 179

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             L    FV P SLGPRILR++TA +  ++      
Sbjct: 180 TALREHKFV-PCSLGPRILRTETAPLYVLSAASYHF 214


>gi|149176993|ref|ZP_01855602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797]
 gi|148844248|gb|EDL58602.1| hypothetical protein PM8797T_07227 [Planctomyces maris DSM 8797]
          Length = 242

 Score =  195 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 10/238 (4%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KS 64
           +  R F D    +  Q    G + H+L HVLRM+ GD +L+FNG   E    IS    K+
Sbjct: 1   MPHRFFYDGSFDVD-QLLLDGSEAHHLLHVLRMQAGDTVLVFNGTGAEAEGVISKTSRKT 59

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
           +  +V  +  +Q K Q+ +    +  K +R  ++++K+ E+G+  + P++TR +      
Sbjct: 60  VEVQVTARHAAQAKSQTPLILATAVPKGDRFRWLVEKAAELGVTKLVPLLTRRSSVDPGQ 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEK 180
             + +++   +SAA+Q   + L  +      +  L        +++ AD      +    
Sbjct: 120 NRLKKLQQTIVSAAKQSGQIQLMELTEVQNWDEFLSEISQTESRLLIADPAGSGVDFFR- 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                    V ILIGPEGG+  +E ++         + L   ILR +TAA+    L++
Sbjct: 179 -SGEKRESPVVILIGPEGGFTPDELQSALEKG-AKSVRLSEGILRIETAAILFAGLIR 234


>gi|294054743|ref|YP_003548401.1| protein of unknown function DUF558 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614076|gb|ADE54231.1| protein of unknown function DUF558 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 249

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 12/242 (4%)

Query: 7   LKRL--FVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           + R   F+     +          + H+L  V R K G+ + L +G+   +   +S    
Sbjct: 1   MARYRSFLFPEASVGEDVIVLDPRESHHLVRVFRAKAGETVELLDGQGRRYQGVLSLAHA 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
           K+ +  VE     +  + ++  I +  K   +D +++ + E+G   I+PV T   +    
Sbjct: 61  KAAQVAVESVELIERPKPELTLIQALPKGKAMDLILRMATEIGATRIQPVFTDQGEVQIK 120

Query: 123 ------NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSE 175
                  +++ R   I A +QC +  LP +  P  L+ LL +        V A    GS 
Sbjct: 121 GERLTSKVEKWRVGMIEACKQCGLAWLPDLAEPIALKTLLASEAATGTTRVVASLEAGSR 180

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                L  +     + + +GPEG + + E   L    F  P+ LG  +LR++TAA   ++
Sbjct: 181 PLAAVLDELEQPKRIEVAVGPEGDFSAAEYALLSECAF-KPVRLGANVLRAETAAAYLLS 239

Query: 236 LV 237
           +V
Sbjct: 240 VV 241


>gi|171463044|ref|YP_001797157.1| protein of unknown function DUF558 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192582|gb|ACB43543.1| protein of unknown function DUF558 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 253

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 19/249 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + + ++  P   +     + +  H+L  V R++ G+   +F+GK      ++  +G    
Sbjct: 1   MPQFYLPGPWESQKPTTLTPEVAHHL-RVRRIQIGEFFPVFDGKGQIAKGELLSLGGKTG 59

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            ++         +     +         +++D++++K+VE G   I P+    +      
Sbjct: 60  QVQLTNIRTDTHRETPYAITLAQGLAGGDKMDWIVEKAVETGAQNIAPMQCERSILKLTR 119

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETC 172
               + T   +        +A EQCD      + P  T E  LK       +++ + +  
Sbjct: 120 SSDAERTQKRLAHWEGIIQAACEQCDRTVFASLEPIQTFESYLKAAPKPALKLLLSPDAS 179

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S  S+          ++ ++IGPEGG+  E +E          +SLG R+LR++TA V 
Sbjct: 180 KSMYSVLI---ENKPQDIVLMIGPEGGHSPE-EEAQAEAAGYQLVSLGERVLRTETAGVV 235

Query: 233 AMALVQAIC 241
           A+  V ++ 
Sbjct: 236 AITAVHSVW 244


>gi|227431610|ref|ZP_03913646.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352602|gb|EEJ42792.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 245

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 13/244 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSI 65
           ++R F++ P+    +  A  D + +   VLR + G      +      L +++ +  + I
Sbjct: 1   MQRYFLNEPINDTIRLTADNDIFKHFGKVLRARVGSKAEFVSNNLEICLGEVTLIDYEVI 60

Query: 66  RFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYTQN 119
             KV  +  S      DV  + SP+K +R D+ IQK+ E+G+  I        +  + + 
Sbjct: 61  NIKVIDRYYSNVELPIDVTLVVSPLKNDRSDWFIQKATELGVKTIVFTSMKRTVADWRKQ 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---GSEN 176
               + R      +AAEQ   L +P I   T  + +      N  +V  +++     S  
Sbjct: 121 QEKKIKRFNKIAKAAAEQAHRLVVPEIIFTTWQKTI--QMPKNTGLVAWEKSARDGESAA 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +  + A+     +  + GPEGG    E E L    F     LGPRILR++TA + AM+ 
Sbjct: 179 LIAAVSAVPSGEKLVCVFGPEGGLTENEIEELRLQNFELA-GLGPRILRAETAPLYAMSA 237

Query: 237 VQAI 240
           +  +
Sbjct: 238 ISVL 241


>gi|28378630|ref|NP_785522.1| hypothetical protein lp_1989 [Lactobacillus plantarum WCFS1]
 gi|300768158|ref|ZP_07078063.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180786|ref|YP_003924914.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271466|emb|CAD64371.1| unknown [Lactobacillus plantarum WCFS1]
 gi|300494222|gb|EFK29385.1| RsmE family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046277|gb|ADN98820.1| hypothetical protein LPST_C1604 [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 250

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 95/248 (38%), Gaps = 14/248 (5%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F+  P+   I      +G+   +   V+R + GD            L+ +      
Sbjct: 1   MQRYFLSTPITTTIGQTFTITGETVKHWVKVMRAQPGDTAEFVTTTHQVVLADLVKSDGR 60

Query: 65  IRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                     +        V       K ++ + ++Q+  E+G  A     +++      
Sbjct: 61  TATATITAVTTPHVELPLPVTIACGLSKGDKPEQIVQRGTELGASAFVFFDSQWAVAKWA 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---G 173
                  + R+      AAEQ     +P +   T L  LL +  ++  +V  +E+     
Sbjct: 121 ANKRARKLARLAKIAQGAAEQSHRTMIPSVSYATDLNQLLAHVSYDTGVVAWEESAKQGE 180

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           S   ++ L  +     +  + GPEGG   +E  TL +   +  + LGPRI+R++TA +  
Sbjct: 181 SSQLVQTLKTMTAPQRLLAIFGPEGGLAPQEVATLQTAG-IAAVGLGPRIMRAETAPLYL 239

Query: 234 MALVQAIC 241
           ++ V   C
Sbjct: 240 LSSVSFWC 247


>gi|294782590|ref|ZP_06747916.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA]
 gi|294481231|gb|EFG29006.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 1_1_41FAA]
          Length = 235

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQ 79
                +  +++ +V R ++GD +   +G + E+L +I  +  K I+ K+  +   + +  
Sbjct: 15  LVIDANDINHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            ++    S +K +++D  IQK  E+G+  I P+  +          DR  T    A +QC
Sbjct: 74  IELDAGISILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197
             +    +     ++ L  N      ++   E        + L  +      +  +IG E
Sbjct: 134 QGVVPTVVDEIKKIDKL--NLKDYDLVLVPYENEEEIFLKDILRNLKVKPSKILYIIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L S      +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDFLKSQG-AKIISLGKRILRAETAAIV 225


>gi|317497460|ref|ZP_07955780.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895246|gb|EFV17408.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 231

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 26/234 (11%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFKVEYQSRSQTK-Q 79
            +  G   +++ +VLRMK GD + L NG D E+   +      +I  K+E     +T+  
Sbjct: 2   IEICGSDVNHIKNVLRMKTGDKVYLSNGSDLEYECSLLEWTDDTILAKIEDVHGMETELP 61

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTIS 133
             +       K ++++ ++QK+VE+G+  I PV  +              + R  T  +S
Sbjct: 62  VKITLYQGLPKGDKMEMIVQKAVELGVAEIVPVAMKRCIVKLDAKKAAKKVSRWNTIALS 121

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           AA+Q     +P +      + +L+   D    +V  +E  G + S E +       ++  
Sbjct: 122 AAKQAKRGIIPEVREVRNFKDILEEVQDIEFMLVPYEEAKGMQASKELISQAKGKKSIG- 180

Query: 193 LIGPEGG--------YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                          +  EE E L +    T +SLG RILR++TA +  ++++ 
Sbjct: 181 -------IIIGPEGGFEKEEIEQLKAAGGQT-MSLGKRILRTETAGMTVLSILM 226


>gi|312622233|ref|YP_004023846.1| hypothetical protein Calkro_1166 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202700|gb|ADQ46027.1| protein of unknown function DUF558 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 243

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 113/254 (44%), Gaps = 31/254 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   FV+           +  +  +++  VLR +EGD I L +G + ++ S+I  + K  
Sbjct: 1   MPIFFVEKQNIENNIAYITDIEDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKDR 59

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E ++ +  + + ++      IK  ++D+++QK  E+G+  I PV+++      ++
Sbjct: 60  IKLLIENKTLNDRESTKNIFLFQCIIKNQKMDFIVQKVTEIGVKTIVPVVSKRVVIDISE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R     A +QC     P I  P  +  + + +     I+F      SE S 
Sbjct: 120 KQEKKVERWRKIAQEAQKQCLRPMPPLIEMPIRISEIKEKYLDKLDILFIPYEKESETS- 178

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKET----------LHSLPFVTPLSLGPRILRSDT 228
            +    +   N+ IL+                       L +   V  +SLG RILRS+T
Sbjct: 179 -EWCISSDYNNIGILV----------GPEGGFEEEEIEELKTFKNVKVISLGKRILRSET 227

Query: 229 AAVAAMALVQAICG 242
           A++AA++++    G
Sbjct: 228 ASIAALSILMHELG 241


>gi|15672086|ref|NP_266260.1| hypothetical protein L105256 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12722949|gb|AAK04202.1|AE006248_10 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 250

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 9   RLFVDFPL-CIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + FV   L  +  +         H++  V+R K GD I L        LS++        
Sbjct: 4   QYFVFKKLPELGEEFIIENQAAAHHIFTVMRAKSGDQIRLVFTDGEIGLSEVISPSDQSV 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR--PVITRYT----QNT 120
             ++  + S      +       K ++LD++++KS E+G  AI   P     +    +  
Sbjct: 64  KLIKLLTESSELPVQITVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177
               +++    + AAEQ     +P +        LL  +    Q++ A E          
Sbjct: 124 TKKQEKLEKVALGAAEQSRRQMIPELQLFEQFTDLLDKFSDFDQVLIAYEESAKMGEKTM 183

Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  ++    V I+ GPEGG   +E      L     + LGPRILR++TA + A++ 
Sbjct: 184 FKQALTEMSLNQKVLIIFGPEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSS 242

Query: 237 VQAIC 241
           + A  
Sbjct: 243 ISAYF 247


>gi|228861774|ref|YP_001710445.2| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 254

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ 72
             L +      +G +  +   V R++ G+ IL+ +G+       ++    + +  +V+  
Sbjct: 13  SDLAVGRLLVLAGQEARHAVTVSRVRSGEGILVGDGRGTIASGTVTSAEPQRLELRVDAV 72

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
                    V  + +  K +R +  +Q + E+G+ A+ P   + +      Q      DR
Sbjct: 73  EAHPEPSPRVVLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDR 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF-----ADETCGSENSLEKL 181
            R     AA+Q     +P + P  T + L++       +V      A+      +     
Sbjct: 133 WRAIVREAAKQSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTAEARLSRLDLAAAD 192

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                  +V +++GPEGG    E E L     + P++LG  ILR+ TA  AA+ALV A  
Sbjct: 193 GDADAATDVLLVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGL 251

Query: 242 GDW 244
           G W
Sbjct: 252 GRW 254


>gi|164686290|ref|ZP_02210320.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM
           16795]
 gi|164601892|gb|EDQ95357.1| hypothetical protein CLOBAR_02728 [Clostridium bartlettii DSM
           16795]
          Length = 250

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 105/260 (40%), Gaps = 38/260 (14%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R FVD              G+   +++ VLR K G+ + + +  + E++ +I+ + K 
Sbjct: 1   MDRFFVDKNNINLENNTCVIVGEDVKHISKVLRCKIGEKLEICDKDNSEYICEITDINKE 60

Query: 65  IRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                 +E +   +     V+      K+ +++ ++QK  E+G+  I  V T+ +     
Sbjct: 61  QVDLDIIEKREIKRESDLKVKLYQGLPKSTKMELILQKLTEVGVDEIILVSTKRSVVKVD 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
            +     ++R       AA+Q     +P +    + +  L++  +N   +   E   + +
Sbjct: 121 DKKEGKKIERWERIMYEAAKQSKRGKIPKLRGILSFKEALEDMKNNDMNICPYENERTVS 180

Query: 177 SLEKLHAIAHIPNVAILI-------------GPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
               +   A I ++ I +                        + ++S      +SLGPRI
Sbjct: 181 IKSAIEG-ADINSIGIFVGPEGGFEEEEIEN----------IQDINS----KVVSLGPRI 225

Query: 224 LRSDTAAVAAMALVQAICGD 243
           LR++TA+V A ++V     D
Sbjct: 226 LRTETASVVASSIVLYELSD 245


>gi|281490567|ref|YP_003352547.1| RNA methyltransferase family protein [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374385|gb|ADA63918.1| RNA methyltransferase family protein [Lactococcus lactis subsp.
           lactis KF147]
          Length = 250

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 9   RLFVDFPL-CIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + FV   L  +  +         H++  V+R K GD I L        LS++        
Sbjct: 4   QYFVFKKLPELGEEFIIENQAAAHHIFTVMRAKIGDQIRLVFTDGEIGLSEVISPSDQSV 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR--PVITRYT----QNT 120
             ++  + S      +       K ++LD++++KS E+G  AI   P     +    +  
Sbjct: 64  KLIKLLTESSELPVQITVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177
               +++    + AAEQ     +P +        LL  +    Q++ A E          
Sbjct: 124 TKKQEKLEKVALGAAEQSRRQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTM 183

Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  ++    V I+ GPEGG   +E      L     + LGPRILR++TA + A++ 
Sbjct: 184 FKQALTEMSLNQKVLIIFGPEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSS 242

Query: 237 VQAIC 241
           + A  
Sbjct: 243 ISAYF 247


>gi|296116281|ref|ZP_06834897.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977100|gb|EFG83862.1| 16S ribosomal RNA methyltransferase RsmE [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 247

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 8   KRLFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            RLF+D     P+C     +   D+ HYL +VLR+  G  +++FN +DGEW + I  + +
Sbjct: 5   PRLFMDPQAFPPMCPDAVIRLEPDRAHYLGNVLRLSAGGRVVVFNARDGEWSATIEVLRR 64

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
                ++ +  R          +F+P+K +  + +I+   E+G+    PVIT  T     
Sbjct: 65  DRGEIRLVHMDRPPRVTQGPGIMFAPLKRDATEMIIRMGTELGVECFYPVITERTNTHRL 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N  R+      A+EQC+ L +P I P   +   + +   + Q+  A E    + + ++  
Sbjct: 125 NEGRLSAIAREASEQCERLDVPAIAPIRPMMEAIAHAPTDMQLFVALERL--DPTAQESE 182

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                P  A+LIGPEGG+   E++ L   P    LSLGP +LR+DT
Sbjct: 183 VPRACPGDALLIGPEGGFSPREQDFLRGRPATRLLSLGPLVLRADT 228


>gi|326405687|gb|ADZ62758.1| ribosomal RNA small subunit methyltransferase E [Lactococcus lactis
           subsp. lactis CV56]
          Length = 250

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 13/245 (5%)

Query: 9   RLFVDFPL-CIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + FV   L  +  +         H++  V+R K GD I L        LS++        
Sbjct: 4   QYFVFKKLPELGEEFIIENQAAAHHIFTVMRAKSGDQIRLVFTDGEIGLSEVISPSDQSV 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR--PVITRYT----QNT 120
             ++  + S      +       K ++LD++++KS E+G  AI   P     +    +  
Sbjct: 64  KLIKLLTESSELPVQITVAVGFPKGDKLDFIVEKSTELGATAIWSAPFKASVSKWDKKKL 123

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS--- 177
               +++    + AAEQ     +P +        LL  +    Q++ A E          
Sbjct: 124 TKKQEKLEKVALGAAEQSRRQMIPELQLFEQFTDLLDKFTDFDQVLIAYEESAKMGEKTM 183

Query: 178 -LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             + L  ++    V I+ GPEGG   +E      L     + LGPRILR++TA + A++ 
Sbjct: 184 FKQALTEMSLNQKVLIIFGPEGGISPDEITKFSDLG-AKMIGLGPRILRAETAPLYALSS 242

Query: 237 VQAIC 241
           + A  
Sbjct: 243 ISAYF 247


>gi|74316173|ref|YP_313913.1| 16S ribosomal RNA methyltransferase RsmE [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055668|gb|AAZ96108.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 242

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKE------------GDNILLFNGKDGEWL 55
            R F+D  L +  +                               GD + LFNG+ GE+ 
Sbjct: 4   PRFFLDQTLSLGARFGLP------------AGPARHAARALRLAAGDALTLFNGRGGEYT 51

Query: 56  SKISYVGKSIRFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113
           + +  + +          R   ++S +            R+DY +QK+ E+G+ AI+P+ 
Sbjct: 52  ASVERITRDEVAVAITGFREIERESRLAITLAQGISSGERMDYTLQKATELGVTAIQPIA 111

Query: 114 TRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
            + +      +     +   +    SA EQC    LP I  P  L   L        +  
Sbjct: 112 AKRSVVKLAGERAEKRVAHWQGVVASACEQCGRNRLPSIAAPLPLAQWLGTGTDERLLFL 171

Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           +         L    A     +V I  GPEGG+ ++E   LH+   V P+ LGPR+LR++
Sbjct: 172 SPLAQARLADL----AAPSGRDVLIA-GPEGGFEADEIAALHAAGAV-PIRLGPRVLRTE 225

Query: 228 TAAVAAMALVQAICGDW 244
           TAA+AA+A +Q + GD+
Sbjct: 226 TAALAALAAMQTLWGDF 242


>gi|254556845|ref|YP_003063262.1| hypothetical protein JDM1_1678 [Lactobacillus plantarum JDM1]
 gi|254045772|gb|ACT62565.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
          Length = 250

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 14/248 (5%)

Query: 7   LKRLFVDFPLC--IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F+  P+   I      +G+   +   V+R + GD            L+ +      
Sbjct: 1   MQRYFLSTPITTTIGQTFTITGETVKHWVKVMRAQPGDTAEFVTTTHQVVLADLVKSDGR 60

Query: 65  IRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
                     +        V       K ++ + ++Q+  E+G  A     +++      
Sbjct: 61  TATATITAVTTPHVELPLPVTIACGLSKGDKPEQIVQRGTELGASAFVFFDSQWAVAKWA 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC---G 173
                  + R+      AAEQ     +P +   T L  LL +  ++  +V  +E+     
Sbjct: 121 ANKRARKLARLAKIAQGAAEQSHRTMIPSVSYATDLNQLLAHVSYDTGVVAWEESAKQGE 180

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           S   ++ L  +     +  + GPEGG   +E  TL +   +T   LGPRI+R++TA +  
Sbjct: 181 SSQLVQTLKTMTAPQRLLAIFGPEGGLAPQEVATLQTAG-ITAAGLGPRIMRAETAPLYL 239

Query: 234 MALVQAIC 241
           ++ V   C
Sbjct: 240 LSSVSFWC 247


>gi|257483559|ref|ZP_05637600.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 151

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 14/158 (8%)

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFI 146
           R+D+ IQK+ E+G+  I P+++   +               +   ISA EQC    +P I
Sbjct: 2   RMDWAIQKATELGVSEITPIVSERCEVRLKDERAEKRQAHWQQIAISACEQCGRSVVPVI 61

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
           + P  L   +K+ + + ++V            E L +     ++A LIGPEGG +  E +
Sbjct: 62  HAPMPLAEWIKHTEADLKLVLHP-------VAEPLTSHDKPASLAFLIGPEGGLNDAEVD 114

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              +  F     LGPR+LR++TA V A+++ Q + GD+
Sbjct: 115 QAQAAGF-HAARLGPRVLRTETAPVVALSVAQQLWGDF 151


>gi|258651801|ref|YP_003200957.1| hypothetical protein Namu_1573 [Nakamurella multipartita DSM 44233]
 gi|258555026|gb|ACV77968.1| protein of unknown function DUF558 [Nakamurella multipartita DSM
           44233]
          Length = 259

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 13/243 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+   L         G +  + A V R++ G+ ++L +G      + ++  G+  +   
Sbjct: 21  FFLVHELPAAGPFVLDGPEGRHAAAVRRLRVGEALVLTDGAGRLAAAVVTAAGRAELTLD 80

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTH 121
           V+   R       V  + +  K  R +  ++ + E G+ AI P   +             
Sbjct: 81  VQPAHRQPPPDVRVTLVQALPKGERGELAVELATEAGVDAIVPWTAQRCMARWRTPDQVD 140

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R R     +A+Q     +P ++ P T   +         +V  + +     +    
Sbjct: 141 KGVRRWRATARESAKQARRAFVPPVHEPATTAEVGARLTGATALVLHESSV----TPLAA 196

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +    +V +++GPEGG   EE     S    T + LGP++LR+ TA   A+  +  + 
Sbjct: 197 AGLPPAGDVVLIVGPEGGLTEEELTVFGSAG-ATVVRLGPQVLRTSTAGAVALGALGVLT 255

Query: 242 GDW 244
           G W
Sbjct: 256 GRW 258


>gi|13357861|ref|NP_078135.1| hypothetical protein UU301 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761930|ref|YP_001752383.1| hypothetical protein UPA3_0309 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920402|ref|ZP_02931725.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|183508812|ref|ZP_02958267.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|186701985|ref|ZP_02971610.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|11356793|pir||B82909 conserved hypothetical UU301 [imported] - Ureaplasma urealyticum
 gi|6899276|gb|AAF30710.1|AE002127_8 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827507|gb|ACA32769.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902842|gb|EDT49131.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|182675768|gb|EDT87673.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|186700758|gb|EDU19040.1| RNA methyltransferase, RsmE family [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 234

 Score =  193 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 4/230 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R FV        +        H++ +V+RM+  D +++ N K   ++++I  +     
Sbjct: 1   MQRYFVSK--IKDKKVYFYDSDVHHIKNVMRMRLHDKVIVIN-KTKAFVAEIINLEPLHA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMD 125
             ++  + +    + +    + IK N  ++++QK+ E+G+ +I   I + T  ++    +
Sbjct: 58  TIIKPYTLNCELATKIDLFQASIKPNNFEWIVQKACELGVNSIYQTIFKRTYNHSLIKTN 117

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R+ T    A EQ     L   Y   +   LLK       I+ A E               
Sbjct: 118 RILTIIKEACEQARRNHLVNYYAQFSFNELLKYLRDYDLILIAYENEKQNLLNNAFKEEL 177

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +A++IGPEGG+   E   L        +SL   ILRS+TA++  +A
Sbjct: 178 TYQKIALVIGPEGGFEQMEINLLKQFDNAICISLTKTILRSETASLYLLA 227


>gi|237740316|ref|ZP_04570797.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422333|gb|EEO37380.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 235

 Score =  193 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQ 79
                +  +++ +V R ++GD +   +G + E+L +I  +  K I+ K+  +   + +  
Sbjct: 15  LVIDTNDINHIKNVFRKEKGDIVRAVDGSN-EYLCEIEEINDKEIKLKIIEKKADKFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            ++    S +K +++D  IQK  E+G+  I P+  +          DR  T    A +QC
Sbjct: 74  IELDAAISILKGDKMDLTIQKLTELGINKIIPIAVKRCVVKLDKKKDRWDTIAKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197
             +    +     ++ L  N      ++   E        + L  +      +  +IG E
Sbjct: 134 QGVVPTVVDEIKKIDKL--NLKDYDLVLVPYENEEEVFLKDILRNLKVKPSKILYVIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L S      +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDFLKSQG-AKIISLGKRILRAETAAIV 225


>gi|323359828|ref|YP_004226224.1| hypothetical protein MTES_3380 [Microbacterium testaceum StLB037]
 gi|323276199|dbj|BAJ76344.1| uncharacterized protein conserved in bacteria [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  193 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 9/232 (3%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQT 77
               + +G + H+ + V R++  + + L +G+       ++    K +  ++  +     
Sbjct: 16  GDVVELTGSEAHHASAVRRVRVDEAVTLGDGRGTWLTGLVTAASPKQVDVRITAREDVPA 75

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTI 132
                  + +  K +R +  +Q + E+G+ AI P      ++R+       + R RT   
Sbjct: 76  PSPRFVLVQALAKGDRDELAVQAATELGVDAIVPWQASRSVSRWDAKAEKGLARWRTIVR 135

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            AA+Q     +P +        L++        VF  E              +   +V +
Sbjct: 136 EAAKQAHRAWIPEVEGLARTADLVRL--AATSQVFVLEPSAPARLTAVATEASDGRDVVL 193

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG   EE   L        + LG  +LR+ TA  AA++++ A  G W
Sbjct: 194 VVGPEGGIAPEELSALERAGARQ-VRLGETVLRTSTAGAAAISVLSAAHGRW 244


>gi|146328991|ref|YP_001209347.1| hypothetical protein DNO_0433 [Dichelobacter nodosus VCS1703A]
 gi|146232461|gb|ABQ13439.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 240

 Score =  193 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           RL  +    +      S   +H+   VLR++E D + +  G    +  +I+ + +     
Sbjct: 5   RLLCEGQPAVGEAVALSDVSHHHALKVLRLRENDAVDVICGDGYFYHGEITCIDRKQTLV 64

Query: 69  VEYQ--SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             Y     S   +++V  + + +K   +D+++QKSVE+G+  + P+ T  ++        
Sbjct: 65  RVYSRSEHSTRPKTEVILLPALLKGEPMDWVLQKSVELGVRRVIPMNTERSERRIEGDRL 124

Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLE 179
               +  +    ++A QC     P +  P      LK       I+   DET  +   + 
Sbjct: 125 TSKYEHWQGILQASALQCGRAEWPLLSLPMNFIDALKTIADEKWILSPHDETTPAIKEMP 184

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                    ++A+++GPEGG+  +E ++   + + T    G RILR+DTA+V A+   Q 
Sbjct: 185 S--------SIALMVGPEGGFSEDEVQSAVHMGWKTHC-FGSRILRADTASVVAVVKAQL 235

Query: 240 ICG 242
           + G
Sbjct: 236 LLG 238


>gi|300173195|ref|YP_003772361.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887574|emb|CBL91542.1| ribosomal RNA small subunit methyltransferase E [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 247

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 16/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           ++R F++  L        + DQ  + +   VLR + G      +      + ++  + + 
Sbjct: 1   MQRYFLEN-LINSDHITLTKDQDVFKHFGKVLRARVGSQAEFVSVDLKVVIGEVIAIDEA 59

Query: 64  SIRFKVEYQSRSQ-TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT 117
            I   V+ +  S      +V  I SP+K +R D+++QK+ E+G+  I        +  + 
Sbjct: 60  KITLAVKSRLDSDVELPLNVTIIVSPLKNDRSDWLVQKATELGVNRIVFAEMTRTVADWK 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       R++    +AAEQ   L +P I   T    L  +      +V  +E+  +   
Sbjct: 120 KQEAKKAVRLQKIAQAAAEQSHRLLVPQIQFLTWQNVL--DLPKQMGLVAWEESARTGEV 177

Query: 178 LEKLHAIAHIP---NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              + +I  +P   +V ++ GPEGG    E E L    +  P  LGPRILR++TA + A+
Sbjct: 178 ATLVKSINEVPIDTDVNLVFGPEGGLTILEIEALARHEYY-PAGLGPRILRAETAPLYAL 236

Query: 235 ALVQAI 240
           + +  +
Sbjct: 237 SAISVL 242


>gi|167009794|ref|ZP_02274725.1| hypothetical protein Ftulh_03505 [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 212

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 36  LRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ-YIFSPIKTN 92
           LR+K+ D I LFN  D  ++ +KI  +  K+I  +V  +     + + +     + IK+ 
Sbjct: 2   LRLKKSDLIELFNNTDSLQYKTKIITIDNKNITLEVIDKKHISNENNYITNLYQAIIKSE 61

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFI 146
             + +IQK+ ++G+  I P+IT +T +          ++R     I+ +EQC  + +P I
Sbjct: 62  NFELVIQKATKLGVNNIYPIITEFTNHKFDKNGFDKKLERWHKIAIAGSEQCGRVFIPKI 121

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
           + P  +   L+   ++  +V    T   ++ ++K+ +  +     I IGPEGG+  +E  
Sbjct: 122 HTPIDIND-LQMPQNDLNLVLCPYTQAKQDFVQKVKSSTNFN---IFIGPEGGFSDKEMS 177

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             HS  F T ++LG RIL+++TA +  ++++  +
Sbjct: 178 KFHSNNFYT-INLGKRILKAETAPINILSIINFL 210


>gi|255994330|ref|ZP_05427465.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC
           49989]
 gi|255993043|gb|EEU03132.1| RNA methyltransferase, RsmE family [Eubacterium saphenum ATCC
           49989]
          Length = 248

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 118/250 (47%), Gaps = 19/250 (7%)

Query: 7   LKRLFVDFPLCIKTQGK-ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           + + FV+    + +  +  + +  H++ HVLR+  G  ILL +GK+ E+   I  +G  +
Sbjct: 1   MNKFFVEKSFVVGSGFEILNPEDVHHIVHVLRLIAGSRILLSDGKN-EYEGVIEDIGGEV 59

Query: 66  RF-KVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----Q 118
              K+   +RS + ++ ++  I    K  +++++++K+ E+G+  + P     +      
Sbjct: 60  VKGKITDLNRSFRERKVELSLIQGIPKAKKIEFIVEKAAELGVMKVFPAFMDRSIVKPTN 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 DR+    +SA EQ     +  +      + ++ + D + +++  +   G  N+L
Sbjct: 120 KDDEKHDRLLKKALSACEQSKRNRVMRVGKLREFKDIILDIDADIKLIAYENEEG--NTL 177

Query: 179 EKL-------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           + +       +      ++A++IGPEGG    E     +  +  P+SLG  ILR++TA +
Sbjct: 178 KDVLSEYGNGNDACKAMSIALVIGPEGGITDSELSIASANGY-KPVSLGGSILRTETAGL 236

Query: 232 AAMALVQAIC 241
            A +++    
Sbjct: 237 VAASMIFYEF 246


>gi|326333962|ref|ZP_08200192.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium
           Broad-1]
 gi|325948241|gb|EGD40351.1| RNA methyltransferase, RsmE family [Nocardioidaceae bacterium
           Broad-1]
          Length = 247

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 14/236 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRS 75
           +    + SGD+ H+   V R++ G+ ++L +G        I+   K  +  +V E     
Sbjct: 16  VGDAVEVSGDEGHHAVVVRRLRVGEEVVLTDGAGEGVTGTITQTTKKSMTVRVDEIIIGD 75

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
              +  +  + +  K +R +  ++   E+G   I P     +      +    ++ R R 
Sbjct: 76  APPEPSLTVVQALPKGDRGELAVEMVTEIGAARIVPWAAARSVAVWKGERAVKSLARWRA 135

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIP 188
               AA+Q   L  P + P  T + ++   +  +  +V  +E      ++  +       
Sbjct: 136 TAREAAKQSRRLWHPEVEPLATTDAVVAMIEAADVAVVLHEEGTLPLGAVPVIDE----G 191

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++ +++GPEGG   +E          T + LG  +LR+ TA VAA A + A    W
Sbjct: 192 SILVVVGPEGGLTVDEIALFEKAG-ATTIRLGGEVLRTSTAGVAACAALLARTRRW 246


>gi|158336565|ref|YP_001517739.1| 16S ribosomal RNA methyltransferase RsmE [Acaryochloris marina
           MBIC11017]
 gi|158306806|gb|ABW28423.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 263

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 8/238 (3%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + L+RL +        Q   + DQ HYL  VLR+  GD  +  NG+   W++++    + 
Sbjct: 6   AQLQRLAIAPEQLQDHQIHLTSDQQHYLCDVLRLGHGDRFIAMNGQGQLWVAELQPDARF 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            R +++           +  + +P K N  D +++   E+G+  I P+I++ T  + +  
Sbjct: 66  AR-RLKALGEQTELAMPMMLLAAPPKGNHFDQVVRSVTELGVSYIVPLISQRTLLKPSSN 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-QIVFADETCGSENSLEKL 181
            + R +     AAEQ     +P +  P + E  +   D    Q         + N L  L
Sbjct: 125 RIQRWQRIATEAAEQSHRQIIPKVLDPASFEKTVMQDDQGDWQRYICTVEPSAPNFLHCL 184

Query: 182 HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  +   VA+++GPEGG+   E +   +  +   +SLG R LR+ TA   A+++
Sbjct: 185 SQALDQESQSGVAVMVGPEGGWTETETQQAQTAGY-QAVSLGQRTLRAVTANYMAVSI 241


>gi|297621017|ref|YP_003709154.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044]
 gi|297376318|gb|ADI38148.1| putative RNA methyltransferase [Waddlia chondrophila WSU 86-1044]
          Length = 241

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 14/239 (5%)

Query: 7   LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           +   R ++D PL + ++    G + H+LAHV R + G+ + L NGK    ++++  + K+
Sbjct: 1   MPVDRFYLDSPLELDSRIAIGGQELHHLAHVSRARAGEEVELINGKGTLAVAEVLEIKKN 60

Query: 65  IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
               + + + S+   +  +    +  + NRLD +++K  E+GM  +R    + ++     
Sbjct: 61  EASLLIHSTISEKPSAFPIIIAQAIPRPNRLDTIVEKCTELGMDELRLFPGKLSEKKDLK 120

Query: 124 ---MDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
              + R+    ISAA+Q   L +P I  YPP +     K    +  + F D +  +    
Sbjct: 121 ESQLARLTKIAISAAKQSGRLFIPSITFYPPIS-----KWPPSDIPLYFGDLSDNAPLFF 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           ++ +       +A +IGPE G H EE   L  L  +  + L   ILR+DTA + A++L+
Sbjct: 176 KRWNTSPPKQGIAFVIGPESGLHEEEVLQLEKLHAI-GVKLHQNILRTDTAPLTALSLI 233


>gi|72161244|ref|YP_288901.1| hypothetical protein Tfu_0840 [Thermobifida fusca YX]
 gi|71914976|gb|AAZ54878.1| Conserved hypothetical protein 46 [Thermobifida fusca YX]
          Length = 248

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 10/244 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
             V+            G +  + A V R+  G+ + L +G        ++ VG+  I   
Sbjct: 6   FLVEPAALDSDPVVVDGAEGRHAATVRRIAVGEPVDLVDGAGHRARCVVTAVGRDTITCA 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V+ +      +  +  + +  K +R +  ++   E G+ A+ P                 
Sbjct: 66  VQERVFEAEPRPRITVVQALPKGDRGELAVEVMTEAGVDAVVPWQAERCITRWRGDRVAR 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKL 181
           ++ + R+   +AA+Q     +P +  P     ++   +     IV  +E     + L   
Sbjct: 126 SLTKWRSAARAAAKQSRRSRIPEVAEPVGKAGVVALLESATLGIVLHEEGAVRLSQLPLP 185

Query: 182 HAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             +     +  +++GPEGG+   E         +  L LGP +LR+ TA VAA+A++QA 
Sbjct: 186 EELFGPAGHAVLVVGPEGGFSDAELAAFEDAGALRAL-LGPTVLRTSTAGVAALAVLQAR 244

Query: 241 CGDW 244
           CG W
Sbjct: 245 CGRW 248


>gi|116620083|ref|YP_822239.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223245|gb|ABJ81954.1| protein of unknown function DUF558 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 237

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIR 66
           +R FVD         +  GD+  +L  VLR++ G    + + +   +L++I+   G+ + 
Sbjct: 4   RRFFVDA--IRNGAAELRGDEARHLTRVLRVESGQRFEISDNQ-HAYLAEIAEAKGERVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----TH 121
           F+V            +    + +K +R ++MI+K+ E+G+  I PV    T+      + 
Sbjct: 61  FRVLEAIAPVPMPVRITLCAAIVKFDRFEWMIEKATELGVERILPVEATRTERGLFEASR 120

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
              +R       +++Q   + +P I P   LE  LK    +   +      G+   L + 
Sbjct: 121 KRSERWTRIARESSQQSRRVQIPEILPAVRLEECLKETAEHRYFL----DEGAAPPLVRE 176

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                   VA+LIGPEGG+   E+    S  +  P+SLGP +LR++T
Sbjct: 177 IPAERSDTVALLIGPEGGWTEAERGLAVSAGWC-PVSLGPLVLRAET 222


>gi|297566407|ref|YP_003685379.1| hypothetical protein Mesil_1997 [Meiothermus silvanus DSM 9946]
 gi|296850856|gb|ADH63871.1| protein of unknown function DUF558 [Meiothermus silvanus DSM 9946]
          Length = 232

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR--FKVEYQSRSQTKQ 79
              +G + H+LA VLR + GD + +F+G+  E  + +  V   +      E    S+   
Sbjct: 15  LTLTGREAHHLADVLRARPGDAVTVFDGEGLEGRAVVRSVEDGVVELEVTETWPASREVP 74

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTISAAE 136
             V    + +K ++L  +++ + E+G   I P++  ++   +     + R+R   + AA+
Sbjct: 75  VPVVLYVALLKGDKLADVVRAATELGAIKIIPLVCVHSVAKEMGEGKLLRLRRVALEAAK 134

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           Q +  T+P +  P  L  +         +V          +L     +     VAI  GP
Sbjct: 135 QSERTTIPEVLAPIPLSAI---PPVEQGLVAHP-----GGTLRVRDILELSRPVAIATGP 186

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           EGG+  +E + L    F TP++LG RILR++TA +A ++LV A
Sbjct: 187 EGGFSEDEMQILLERGF-TPVTLGRRILRAETAPLALLSLVTA 228


>gi|194334810|ref|YP_002016670.1| 16S ribosomal RNA methyltransferase RsmE [Prosthecochloris
           aestuarii DSM 271]
 gi|194312628|gb|ACF47023.1| protein of unknown function DUF558 [Prosthecochloris aestuarii DSM
           271]
          Length = 245

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 17/241 (7%)

Query: 10  LFVDFPLCIKTQGK---ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           LF   P CI    +     G+++ ++  VLR  EG ++ L +G      + I  + K  +
Sbjct: 3   LFYTPPECIDLTARTLVVEGEEFFHIVRVLRRTEGQSLHLTDGCGLSINAVIDSIDKGRL 62

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT------Q 118
              +      +   ++V    S +K+  R D+ ++K+ E+G+ +I P++T  T      +
Sbjct: 63  NASIASFQHIEPPATEVTVAISLLKSAQRFDFFLEKATELGVTSIIPMVTSRTVSQPRGE 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R +   I+A+ Q    +LP I  P     +L       + +   E+     S+
Sbjct: 123 KVQRKVERWKKVLIAASIQSKRYSLPDICEPRCFGEVLSEGGSYDERLIPYESSCQSPSV 182

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                         +IG EGG+   E +      F T +S G  ILR++TAAV A+A+ +
Sbjct: 183 AL-----AGRKTLFVIGGEGGFSETEVQQAKDSGF-TEISFGSSILRAETAAVFAVAMAR 236

Query: 239 A 239
           A
Sbjct: 237 A 237


>gi|289450255|ref|YP_003475043.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184802|gb|ADC91227.1| putative 16S rRNA methyltransferase RsmE [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 246

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 26/253 (10%)

Query: 7   LKRLFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +K++ ++  L     Q        H+L +V R   G+ +LL +     + S++   GK+ 
Sbjct: 1   MKKVRLEVDLDEGWQQISLDAAARHHLCNVQRALSGEKVLLVDKSGRRFFSEL---GKNG 57

Query: 66  RFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
             K      + T+    V  I    K ++ ++++QK VE+G     P+  + +      +
Sbjct: 58  CVKRMGDCLADTEPPYRVYLIQGMPKGDKWEFILQKGVELGATDFYPLNLQRSIARVKKE 117

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSE 175
           +    + R      +AA Q      P I+P T L+     L    +  ++V  +E    E
Sbjct: 118 DLSKKVIRWNKIIAAAALQSGRTGCPIIHPVTDLKACVAELALLPNTLRVVAWEE----E 173

Query: 176 NSLEKLHAIAH-------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            SL    AI+          ++ I+IGPEGG  ++E   L    F   +SLG RILR++T
Sbjct: 174 RSLSLADAISDYRKHCGIPEHICIVIGPEGGLAADEIGVLKESGF-QVVSLGRRILRTET 232

Query: 229 AAVAAMALVQAIC 241
           A + A+A +    
Sbjct: 233 AGIMALANLTYEF 245


>gi|312793761|ref|YP_004026684.1| hypothetical protein Calkr_1578 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876840|ref|ZP_07736817.1| protein of unknown function DUF558 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796355|gb|EFR12707.1| protein of unknown function DUF558 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180901|gb|ADQ41071.1| protein of unknown function DUF558 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 243

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 33/255 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +   FV+           +  +  +++  VLR +EGD I L +G + ++ S+I  + K  
Sbjct: 1   MPIFFVEKQNVENDIAYITDKEDINHIVKVLRKREGDKINLCDG-NYDYSSRIVEISKNR 59

Query: 65  IRFKVEYQSRSQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQ 118
           I+  +E ++ +  +   ++      IK  ++D+++QK+ E+G+  I PV+++      ++
Sbjct: 60  IKLLIENKTLNDRESIKNIFLFQCIIKNQKMDFVVQKATELGVKTIVPVVSKRVVIDISE 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R       A +QC     P I  P  +  + + +     I+        E   
Sbjct: 120 KQEKKVERWLKIAQEAQKQCLRPVPPLIEMPIRISEIKEKYLDKLDILLVPYE--KEFGT 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKET-----------LHSLPFVTPLSLGPRILRSD 227
            K +  +   N+ IL                         L +   V  +SLG RILRS+
Sbjct: 178 AKWNLSSDYNNIGIL-----------IGPEGGFEEEEIEDLKTFKNVQVISLGKRILRSE 226

Query: 228 TAAVAAMALVQAICG 242
           TA++AA++++    G
Sbjct: 227 TASIAALSILMHELG 241


>gi|94970268|ref|YP_592316.1| 16S ribosomal RNA methyltransferase RsmE [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552318|gb|ABF42242.1| protein of unknown function DUF558 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 234

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 10/223 (4%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
                 +G    +LA VLR + G    +  G        I+ + +        +    T 
Sbjct: 13  GDTAALTGTNAAHLARVLRARVGQQFDISLGT-HIRRGTITSIAEDRVEFTLGEELPSTA 71

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTIS 133
            + +    +  K +RL++ I+K  E+G+  I PVI R T+     +    ++R R   + 
Sbjct: 72  ITPISLYLAVFKFDRLEWAIEKCTELGVAKIIPVIARRTEPHLAASAAKRVERWRRIALE 131

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           AA+Q      P I  P  L+  L+      +IV A ET       + L A      V++ 
Sbjct: 132 AAQQSRRAAPPEITEPVKLKQTLEAV--GQRIVLA-ETEQQNMLRDVLEASEQSREVSLA 188

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           IGPEGG+  +E        +    SLGP ILR++TA+++A+A+
Sbjct: 189 IGPEGGWTDDELTQFDQSGWQRA-SLGPTILRAETASISAVAI 230


>gi|75764072|ref|ZP_00743673.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488442|gb|EAO52057.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 221

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 13/220 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           ++R FV+     + + +  GD  H++A V+RM  GD I          +  I  +     
Sbjct: 1   MQRYFVEEKHVSEAKVRIVGDDVHHIARVMRMTAGDQIYCCV-NGKTAVCSIDEITSEFI 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               VE+   S      V       K ++L+ + QK  E+G  A  P     +      +
Sbjct: 60  NTAIVEWVEASSELPVFVTIASGLPKGDKLELIFQKGTELGAAAFLPFQASRSIVKWDAK 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE--- 175
                ++R+R     AAEQ     +P ++ P + + LL         + A E    +   
Sbjct: 120 KADKKVERLRKIVKEAAEQSHRSEIPEVHAPASFKQLLTMSGEYDVCLVAYEEEAKQGEK 179

Query: 176 -NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
            N  + L  +     + I+ GPEGG   EE   L     V
Sbjct: 180 SNFAKALTTMKPGQKLLIVFGPEGGLAEEEITALREHKXV 219


>gi|320450557|ref|YP_004202653.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01]
 gi|320150726|gb|ADW22104.1| RNA methyltransferase, RsmE family [Thermus scotoductus SA-01]
          Length = 228

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 14/224 (6%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
                G     +  +L  VLR K GD   +F+  D E L+++  +G  +R+++  + R +
Sbjct: 8   SPGLTGVLPLRESRHLLEVLRAKVGDRFTVFD-VDREALAEVVELGPPVRYRILEERRPE 66

Query: 77  TKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTI 132
            +   +V    + +K ++L  +++ + E+G   I+P++TR++   +     + R++   +
Sbjct: 67  REVGVEVALYPALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLKRLQAIAV 126

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            AA+Q   L +P + PP  L  L K        V      G+ + + ++  +    ++A+
Sbjct: 127 EAAKQSGRLRVPEVLPPIPLNALPKVEQGMVAHV------GARSLVREVLDL--GKSLAL 178

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            +GPEGG+  EE E L    F TP+ LG RILR++TAA+A +AL
Sbjct: 179 AVGPEGGFAEEEVELLQEKGF-TPVFLGRRILRAETAAIALLAL 221


>gi|148242549|ref|YP_001227706.1| hypothetical protein SynRCC307_1450 [Synechococcus sp. RCC307]
 gi|147850859|emb|CAK28353.1| Conserved hypothetical protein [Synechococcus sp. RCC307]
          Length = 252

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 114/242 (47%), Gaps = 12/242 (4%)

Query: 4   HSHLKRLFVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
            + L+R+ +  P  +       + + D+ HYL  VLR++ G    + +G+ G   +++  
Sbjct: 1   MAELRRILI-TPQRLAGCGQDVELTSDERHYLEKVLRLRPGSPFAIVDGQGGLHQAELRS 59

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--Q 118
            G + +     Q   Q  +  +  +   I+ +  + +++ + E+G+  +RP+  + +  +
Sbjct: 60  NGWAQQGACVEQQPPQQLE--LVLLMGLIRRD-FEVVVRMTCELGLDQLRPLQAQRSVVE 116

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--HNCQIVFADETCGSEN 176
           +      R ++    A EQC+ L LP ++P ++    L         + +      G   
Sbjct: 117 SKGQRPQRWQSQLQEACEQCERLWLPQLHPVSSAIDGLSQAKSAGELRCIGVTREAGVPL 176

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             E L A +      +  GPEGG+  +E++   +  +  P+SLGP ILR+ TAA++ +A+
Sbjct: 177 LAEVLEAASPTQRWQLACGPEGGWTDDERQAAAAHGW-QPVSLGPNILRASTAAISGLAV 235

Query: 237 VQ 238
           +Q
Sbjct: 236 MQ 237


>gi|254442333|ref|ZP_05055809.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae
           bacterium DG1235]
 gi|198256641|gb|EDY80949.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae
           bacterium DG1235]
          Length = 255

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 17/251 (6%)

Query: 7   LK--RLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +   R   D     +  Q + S D+ ++L    R + GD + +F+GK  E  +++S   K
Sbjct: 1   MPDFRCHCDTSAFALDGQIELSPDESNHLIAANRARVGDPVRVFDGKGNEGNARVSVANK 60

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
                K+E           +    +  K   ++ +I+K+ E+G+  I P+ITR  +    
Sbjct: 61  RRAVLKIESICTLPPPPYQIALAQALPKGKLIETIIRKATEIGIQQIFPLITRRVELKIE 120

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                    +    T+  A+Q     L  I P   L  LL   +     + A  T  + +
Sbjct: 121 PKKEDSKNAKWTAATLEGAKQSGNPHLLKIEPICDLNSLLNQSEGFDLKLIASLTTDTTS 180

Query: 177 SLEKL------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             ++L      H  +   +V  L+GPEG +  EE +   +  F+ P +LG  ++RS+TAA
Sbjct: 181 LKKQLERYQSEHNGSSPKSVLWLVGPEGDFTPEETQISINAGFL-PTTLGRYVMRSETAA 239

Query: 231 VAAMALVQAIC 241
             A+++ Q   
Sbjct: 240 THALSITQYEL 250


>gi|283781126|ref|YP_003371881.1| hypothetical protein Psta_3357 [Pirellula staleyi DSM 6068]
 gi|283439579|gb|ADB18021.1| protein of unknown function DUF558 [Pirellula staleyi DSM 6068]
          Length = 236

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +  R FVD PL        +GD+  +L  V+R K GD ++LF+G   E  + I    K  
Sbjct: 1   MPDRYFVDKPLAAGIAI-IAGDEARHLVGVMRAKLGDEVVLFDGCGHEADATIEKTAKER 59

Query: 65  IRFKVEYQSRSQTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTH 121
           +  +VE       +  S +    +  K +R  ++++K VE+G  A+ P+ T     Q   
Sbjct: 60  VELRVETVRDVPREFASQLTLAVALPKGDRQKWLVEKLVELGCDALLPLETDRGVAQPVE 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R++   + A++Q     L  I  P + + L      + Q  F     G   SL++ 
Sbjct: 120 SAIERLKRGVLEASKQSGRALLMRIEAPASSDTLFSAATVHNQPCFIAHPGGC--SLDQA 177

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              +   N    IGPEGG+   E +      F   +SLGP ILR +T
Sbjct: 178 WDQSSG-NALFAIGPEGGFSDREVQLAEQAGFQK-VSLGPTILRIET 222


>gi|318061224|ref|ZP_07979945.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp.
           SA3_actG]
 gi|318076106|ref|ZP_07983438.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces sp.
           SA3_actF]
          Length = 251

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 11/245 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RL               G +  +   V R++ G+ I+L +G+       ++      R 
Sbjct: 9   PRL--AEEAVPGGVFVLDGPEGRHAVSVKRLRPGEEIVLSDGEGRWAPCVVTAAEGKDRL 66

Query: 68  KVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQN 119
            VE             +  + +  K +R +  ++   E G+ AI P              
Sbjct: 67  SVEVGELREEPLPSPRLVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDR 126

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++ + R     A +Q      P I    + +            V   E  G+ ++  
Sbjct: 127 GAKSLAKWRATAREAGKQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPL 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +    ++ +++GPEGG   EE  +  +        LGP +LR+ TA  AA+AL+  
Sbjct: 187 ATLPLPDEGDIVLVVGPEGGVAPEEIASFTAAG-AHVCRLGPSVLRTSTAGTAAVALLSG 245

Query: 240 ICGDW 244
             G W
Sbjct: 246 RTGRW 250


>gi|189219856|ref|YP_001940497.1| hypothetical protein Minf_1845 [Methylacidiphilum infernorum V4]
 gi|189186714|gb|ACD83899.1| Uncharacterized conserved protein [Methylacidiphilum infernorum V4]
          Length = 217

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 11/216 (5%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQSDVQYIFSPIKTN 92
           +R K GD I +F+GK   W +KI  +      +    E +  S +K+  +  I S +K  
Sbjct: 1   MRHKIGDLIEVFDGKGSSWEAKIEKIENHQVFVSLLREIKEDSPSKKPLLVLIQSVLKNK 60

Query: 93  RLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            + +++QK  E+G+  I PVI++ +     +       +     I+AA+Q     LP ++
Sbjct: 61  AMHWLLQKVTEIGVDRIIPVISKRSLSAVEEGQQLKEKKWNEILIAAAKQSHRRKLPELF 120

Query: 148 PPTTLEFLLKN-WDHNCQIV-FADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
             + L   LK  +  + ++V F  +   S   + + ++  ++ +V ILIGPEG +  EEK
Sbjct: 121 KISLLADALKEGFPSSLKLVAFLGKEARSLKEVMQCYSSRNVSSVVILIGPEGDFTGEEK 180

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             + +  F+ P+SLG ++LRS+TAA+   +++    
Sbjct: 181 NMVLNQGFI-PVSLGNQVLRSETAALFLASVMNYEL 215


>gi|262068260|ref|ZP_06027872.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291377998|gb|EFE85516.1| RNA methyltransferase, RsmE family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 235

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQ 79
                +  +++ +V R ++GD +   +G + E+L +I  +  K I+ K+  +   + +  
Sbjct: 15  LVIDVNDINHIKNVFRKEKGDILRAVDGFN-EYLCEIEEISDKEIKLKIIEKKADKFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
             +    S +K +++D  IQK  E+G+  I P+  +          DR  T    A +QC
Sbjct: 74  VKLDAAISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTIAKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197
             +    +     ++ L  ++     I+   E        + L  +      +  LIG E
Sbjct: 134 QGVVPTVVDEIKKIDKL--DFKDYDLILVPYENEKEVFLKDILRNLKVKPSKILYLIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE E L S      +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIEFLESRG-AKIISLGKRILRAETAAIV 225


>gi|269127458|ref|YP_003300828.1| hypothetical protein Tcur_3251 [Thermomonospora curvata DSM 43183]
 gi|268312416|gb|ACY98790.1| protein of unknown function DUF558 [Thermomonospora curvata DSM
           43183]
          Length = 244

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 12/243 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67
             +D     + +    G +  +   V R++ G+ + L +G        ++ V     +  
Sbjct: 6   FLIDSTALREDRVVLEGPEGRHAVTVRRLRPGERVDLTDGDGLLAECVVAAVAGKDRLVL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +V  + R Q     +  + +  K  R +  ++   E G+  I P                
Sbjct: 66  EVLARHRHQPPSPRLVVVQALPKGERGELAVETMTEAGVDEIVPWQAARCVTRWRPDRMD 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R RT    AA+Q     LP I P  T E +        + +   E       L  +
Sbjct: 126 KALGRWRTTAREAAKQSRRSRLPQIPPLATTEQVAARLAGAARAIVLHEAATV--PLRAV 183

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              +    +A+ +GPEGG   EE         V  + LGP +LR+ TA VAA A++ +  
Sbjct: 184 DLPSEGEIIAV-VGPEGGITDEELACFAEAGAV-AVRLGPTVLRTSTAGVAAAAILLSAT 241

Query: 242 GDW 244
           G W
Sbjct: 242 GRW 244


>gi|167947327|ref|ZP_02534401.1| hypothetical protein Epers_12597 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 58  ISYVGKSIRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
           IS     +  ++    R + K S  +       +  R+D+ +QKSVE+G+ AI P++T  
Sbjct: 1   ISSDRNRVEVELHQCLRKEAKDSLPITLAIGISRGERMDFALQKSVELGVSAIVPLVTER 60

Query: 117 TQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE 170
                        M   +   ISA EQ     +P +  P   + +L+      +++    
Sbjct: 61  CVVRLDPRRQQKRMTHWQKIVISACEQSGRCRVPQLEQPGRFDEMLQQLPATMRLMLDHR 120

Query: 171 TCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
              S      LH ++  P+ + +L+GPEGG   EE+       F   + LGPR+LR++TA
Sbjct: 121 ASES------LHDLSSRPDAIVLLVGPEGGLSPEERRLAQQAGF-KGVRLGPRVLRTETA 173

Query: 230 AVAAMALVQAICGDWY 245
            +AA+A +Q   G  Y
Sbjct: 174 PLAALAAIQTPVGGLY 189


>gi|110004933|emb|CAK99265.1| conserved hypothetical upf0088 protein [Spiroplasma citri]
          Length = 239

 Score =  190 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 12/241 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65
           + R FV      +     + D    +  VLR++    I+   NG+      ++    K  
Sbjct: 1   MHR-FV-ANQLEENYFILAEDDVKQIKQVLRLRNQTQIICIYNGEHYLTTLEVQSPQKYA 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              ++   ++      V+ I   I+  + DY++QKS E+G+  I P            +N
Sbjct: 59  FKLIKKLEQNHESPITVRLIAGLIRNTKWDYLLQKSTELGVNEIIPFQFSRCVVQLKGEN 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R       A EQ     +P +    +   +L+ +  +  +V  ++   + +  +
Sbjct: 119 NFKKIERWTKICKEATEQSYRNQVPLVNDVESDLKVLQKYQSDVNLVCYEKVVETLSIKQ 178

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L        + I+IGPEGG+   E   L S  +  P+SLG RILR++TA+VA +A++  
Sbjct: 179 FLQQ--DFKTITIVIGPEGGFTPNEIAVLSSYHYY-PVSLGQRILRAETASVALLAMIMY 235

Query: 240 I 240
            
Sbjct: 236 E 236


>gi|331698261|ref|YP_004334500.1| ribosomal RNA small subunit methyltransferase E [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952950|gb|AEA26647.1| Ribosomal RNA small subunit methyltransferase E [Pseudonocardia
           dioxanivorans CB1190]
          Length = 248

 Score =  190 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 12/243 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           LF+   L         G +  + A V R++ G+ I L +G+ G   + +  VG+  +  +
Sbjct: 6   LFLVDELPAGPDAVLDGPEGRHAATVRRLRPGEEITLADGRGGLARAVVDTVGRDRLDVR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121
           V  ++  +     V    + +K  R +  ++ + E G+ AI P                 
Sbjct: 66  VLDRAELEPPTPRVTLAQALVKGERGELAVELATEAGVDAILPWRAARCVVRWEDGARGD 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R R    SAA+Q     +P +  P +   L        + +   E+  +E     L
Sbjct: 126 RALARWRATVRSAAKQARRAWVPEVGAPVSTRELAALCPTFDRALVLHES-ATEGLASGL 184

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                   V +++GPEGG   EE   L +      + LGP +LR+ TAA  A+  + A+ 
Sbjct: 185 SGA--PAEVLLVVGPEGGVADEEIAMLTAAG-ARAVRLGPEVLRASTAAAVALGAIGALT 241

Query: 242 GDW 244
             W
Sbjct: 242 SRW 244


>gi|283769587|ref|ZP_06342483.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219]
 gi|283103855|gb|EFC05241.1| RNA methyltransferase, RsmE family [Bulleidia extructa W1219]
          Length = 235

 Score =  190 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 15/238 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDGEWLSKISYVGKSI 65
           + + F      +        +Q H+  HVL + + + + L  +GK    ++ +   G+  
Sbjct: 1   MHQYFCQTKPIVGQTYTLLKEQEHHAHHVLHL-DHEVLRLVYDGKAFFAIATVID-GQFQ 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
            F  +        + ++    + I+  + ++++QK+ E+G+  I P  +  T        
Sbjct: 59  CFVEKEDLFVNELEQEITLCMALIRKEKFEWVLQKATELGVKKIVPFTSSRTIVKVQKEK 118

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                 R     + A++QC    +P +     L+  LKN+     +V A+ET   E++  
Sbjct: 119 EMKMKKRYGQIVLEASQQCKRNYIPEVLEVVHLDD-LKNYQSEDNVV-ANETKHQEHTFF 176

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            L       N  I+IGPEGG+ SEE   L  + F   +SLG RILR++TAA+ A+++V
Sbjct: 177 DL---KTKKNTTIVIGPEGGFSSEEIVKLEKMGF-RSISLGNRILRAETAAIFAVSVV 230


>gi|108804350|ref|YP_644287.1| hypothetical protein Rxyl_1513 [Rubrobacter xylanophilus DSM 9941]
 gi|108765593|gb|ABG04475.1| protein of unknown function DUF558 [Rubrobacter xylanophilus DSM
           9941]
          Length = 242

 Score =  190 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 11/237 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R+F+   L    +     ++ H+L  VLR   G+     +     +++++   G S  
Sbjct: 1   MTRVFLGERLEAGGRFVLPREEDHHLRRVLRAGPGERFEAVDAAGRLFMAELRE-GASAE 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNM 124
                +     ++++V    +  K  R+D +++K+ E+G+  I P++   +        +
Sbjct: 60  AVELLREAGAEERAEVWLYQAVPKGKRMDLVVEKATEVGVAGIAPLVCERSVVRPGDNKV 119

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +R R    SAA Q   L +P +  P      ++       ++       +   L+ L   
Sbjct: 120 ERWRRIAESAARQALRLRVPEVREPVAFREAVREVGGRGVLLH------NGPGLDPLEER 173

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           A    VA+L+GPEGG+   E E       ++   LGP  LRS+TA V A+A ++A+ 
Sbjct: 174 ARGA-VALLVGPEGGWSGAEIEEALRCG-LSLAQLGPFRLRSETAGVVAVARMRAVL 228


>gi|169156681|emb|CAQ01839.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 233

 Score =  190 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 13/233 (5%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDV 82
            +G +  +   V R++ G+ IL+ +G+       ++    + +  +V+           V
Sbjct: 2   LAGQEARHAVTVSRVRSGEGILVGDGRGTIASGTVTSAEPQRLELRVDAVEAHPEPSPRV 61

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
             + +  K +R +  +Q + E+G+ A+ P   + +      Q      DR R     AA+
Sbjct: 62  VLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDRWRAIVREAAK 121

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVF-----ADETCGSENSLEKLHAIAHIPNVA 191
           Q     +P + P  T + L++       +V      A+      +            +V 
Sbjct: 122 QSIRPRVPEVEPLATTKDLVRMAATFRVLVLVLDPTAEARLSRLDLAAADGDADAATDVL 181

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +++GPEGG    E E L     + P++LG  ILR+ TA  AA+ALV A  G W
Sbjct: 182 LVVGPEGGISPAEVEALREAGAI-PVALGSGILRTSTAGPAALALVNAGLGRW 233


>gi|317052435|ref|YP_004113551.1| hypothetical protein Selin_2275 [Desulfurispirillum indicum S5]
 gi|316947519|gb|ADU66995.1| protein of unknown function DUF558 [Desulfurispirillum indicum S5]
          Length = 243

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 17/245 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFK 68
             +D  L  +   +  G+ +H+L  VLR   GD + +L  GK   +  +I+ +       
Sbjct: 3   FLIDQALIGQDSCRIEGEDFHHLRRVLRKNIGDPVDILSTGK-VRYRGRITAMADDSAAI 61

Query: 69  VEYQSRSQTKQSDVQYIF--SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +   +S +Q     + IK +     ++   E+G   I   ++         +  
Sbjct: 62  SLSDPIAHETESSLQLTIACAAIKGDAFFDNVRMFCELGAHRIVVFVSENCVVQYDEKRA 121

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL--KNWDHNCQIVFADETCGSENSL 178
               ++++     + +Q      P I P TT E LL    W    +I+  +       SL
Sbjct: 122 QRKREKMQRIVNESCKQNLRTCPPAIDPLTTFEQLLSDDQWLPRQKILCYEGAREPIASL 181

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               +I     + ++IGPEGG    E +       +  +SLGPRIL++ TA VAA+++VQ
Sbjct: 182 ----SIDTGQPLLLMIGPEGGISQREAQKARMCG-IQMVSLGPRILKASTAQVAALSIVQ 236

Query: 239 AICGD 243
              GD
Sbjct: 237 HRFGD 241


>gi|317970157|ref|ZP_07971547.1| hypothetical protein SCB02_11506 [Synechococcus sp. CB0205]
          Length = 248

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 19/253 (7%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI---- 58
           +   L+RL +  P  + +Q   + ++  YL  VLR   GD   + NG+   W + +    
Sbjct: 1   MARELRRLLI-APERLASQIALTREEERYLTRVLRFSAGDRFAVVNGQGALWTAVLRQSA 59

Query: 59  -SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
            + + +S+   +E+Q         +    + +K +  + +++ +VE+G+    P++   T
Sbjct: 60  CAELEQSLEAPLEHQ---PAPAPQLVLAAAVVKRD-FEVVLRMAVELGVDRFIPLLCERT 115

Query: 118 Q-NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R R+    AAEQC+ L  P I  P  +  LL   D      +A        
Sbjct: 116 VVQGSLRLERWRSIAAEAAEQCERLWSPRIEEPMDVHQLLGLRDSAVPGFWATTRQQELP 175

Query: 177 SLEKLHA---IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            L  + A   +  + ++ +  GPEGG+   E++   +  +  P+ LGPRILRS TA V+ 
Sbjct: 176 LLASVLADQPLERLSSLWLACGPEGGWSPSEEQAAEAAGW-KPVDLGPRILRSSTACVSG 234

Query: 234 MALVQ----AICG 242
           ++ +     A CG
Sbjct: 235 LSSLSSARVARCG 247


>gi|313680577|ref|YP_004058316.1| hypothetical protein Ocepr_1690 [Oceanithermus profundus DSM 14977]
 gi|313153292|gb|ADR37143.1| protein of unknown function DUF558 [Oceanithermus profundus DSM
           14977]
          Length = 233

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 16/232 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
              R+FV     I  +   +G + H+L HVLR++ G  +++F+G   E  +++++ G   
Sbjct: 2   RKPRVFVP---RIDPEIVLAGGEAHHLLHVLRVRPGREVVVFDGAGLEAEARVTHAGGGA 58

Query: 66  RFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNT 120
                 + R+  ++  +      + +K ++L  +++   E+G+    P++T  +   +  
Sbjct: 59  VRLAAGEPRAVRREPPLAPVLYVALLKGDKLADVVRAGSELGVVRFVPLVTERSVPREMG 118

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R+R   + AA+Q     LP + PP  L   L+  D    +V       +   +  
Sbjct: 119 RAKLERLRRIAVEAAKQSGRSRLPEVAPPRAL-AALEPVDFG--LVAHPGAARTLAEV-- 173

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             A       A+  GPEGG+   E   L  L F  P+ LGPRILR++TA + 
Sbjct: 174 --AWPEAGEAALASGPEGGFTEAEVAHLAGLGFA-PVYLGPRILRAETAPLV 222


>gi|260494170|ref|ZP_05814301.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198316|gb|EEW95832.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 235

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQ 79
                   +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    + +  
Sbjct: 15  LVVEASDINHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            +V    S +K +++D  IQK  E+G+  I P+  +          DR  T +  A +QC
Sbjct: 74  IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197
             +    I     ++ L  N      I+   E        + L  +   P  +  +IG E
Sbjct: 134 QGVVPTVIDEIKKIDKL--NLKDYDLILVPYENEKKIFIKDILRNLKVKPTKILYIIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L        +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225


>gi|288904368|ref|YP_003429589.1| hypothetical protein GALLO_0147 [Streptococcus gallolyticus UCN34]
 gi|306830400|ref|ZP_07463570.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977364|ref|YP_004287080.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731093|emb|CBI12639.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304427425|gb|EFM30527.1| RsmE family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177292|emb|CBZ47336.1| ribosomal RNA small subunit methyltransferase E [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 247

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV              D   ++ +V+R+ E D ++L      + L+K+    +   
Sbjct: 1   MQQYFV-AGQAQDVVTITDKDTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEHRF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +     +V       K ++L+++ QK  E+GM  +        V+    +  
Sbjct: 60  EIIEELDSNVELPVEVTIAAGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               D++   T+ AAEQ    ++P +         L   +   +I  A E    E     
Sbjct: 120 AKKADKLAKITLGAAEQSKRNSIPEVTLFEKKAAFLAELEQFDRIFIAYEESAKEGETAV 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  +     +  + GPEGG   EE ET  S   +  + LGPRI+R++TA + A+A 
Sbjct: 180 LARELSQMKAGEKILFIFGPEGGISPEEIETFESKGGLK-IGLGPRIMRAETAPLYALAS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|254302941|ref|ZP_04970299.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323133|gb|EDK88383.1| hypothetical protein FNP_0576 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 235

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 8/209 (3%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ-TKQSDVQYI 85
             +++ +V R  +GD I   +G + E+L +I  +  K I  K+  ++  + +   +V   
Sbjct: 21  DINHIKNVFRKVKGDKIRAVDGTN-EYLCEIEKIEDKEIELKILEKTEDKFSLDIEVDAG 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144
            S +K +++D  IQK  E+G+  I P+  +          DR    +  A +QC  +   
Sbjct: 80  ISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWEIISKEALKQCQGVVPT 139

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSE 203
            I     ++ L  N+     I+   E        E    +      +  +IG EGG+  E
Sbjct: 140 VIDEIKKIDKL--NFKDYDLILVPYENEKEIFIKEIFRDLKIKPTKILYIIGAEGGFEKE 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E   L        +SLG RILR++TAA+ 
Sbjct: 198 EINYLKENG-AKIISLGKRILRAETAAIV 225


>gi|333027170|ref|ZP_08455234.1| putative RsmE family RNA methyltransferase [Streptomyces sp.
           Tu6071]
 gi|332747022|gb|EGJ77463.1| putative RsmE family RNA methyltransferase [Streptomyces sp.
           Tu6071]
          Length = 251

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 11/245 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RL               G +  +   V R++ G+ I+L +G+       +       R 
Sbjct: 9   PRL--AEEAVPGGAFVLDGPEGRHAVSVKRLRPGEEIVLSDGEGRWAPCVVKAAEGKDRL 66

Query: 68  KVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQN 119
            VE             +  + +  K +R +  ++   E G+ AI P              
Sbjct: 67  SVEVGELREEPVPSPRLVVVQALPKGDRGELAVETMTETGVDAIVPWQAARCVTQWRGDR 126

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++ + R     A +Q      P I    + +            V   E  G+ ++  
Sbjct: 127 GAKSLAKWRATAREAGKQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLHEDTGTASTPL 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +    ++ +++GPEGG   EE  +  +        LGP +LR+ TA  AA+AL+  
Sbjct: 187 ATLPLPDEGDIVLVVGPEGGVAPEEIASFTAAG-AHVCRLGPSVLRTSTAGTAAVALLSG 245

Query: 240 ICGDW 244
             G W
Sbjct: 246 RTGRW 250


>gi|116070640|ref|ZP_01467909.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107]
 gi|116066045|gb|EAU71802.1| hypothetical protein BL107_13380 [Synechococcus sp. BL107]
          Length = 244

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 10/235 (4%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQ-GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           M+    L+RL +     + ++  K   D+ HYL  VLR++ GD + + +G    W +++ 
Sbjct: 1   MR---ELRRLLIPPDRFVGSELIKLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAELV 57

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ- 118
               +++       +    Q  +    S I+    D +++ + E+G+  I+P+    T  
Sbjct: 58  D-EHTVKTDPTPCEQLVQPQPPLGLAVSIIRRG-FDDVVRMACELGIDTIQPLRCERTVL 115

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
              +  DR  T    A EQC+ L  P +    +LE  L +     + V    T   E   
Sbjct: 116 QAEHRPDRWNTIVREAVEQCERLWKPTVLELNSLESWLDSSSGQ-KAVGVTRTKKLEPLG 174

Query: 179 EKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           + L  IA       +++GPEGG+ S E++ LH+   V P+ LGP ILR+ TAAVA
Sbjct: 175 DWLEQIAIPAQTTWLIVGPEGGWTSAERDALHNHS-VAPIHLGPSILRTSTAAVA 228


>gi|256027910|ref|ZP_05441744.1| putative cytoplasmic protein [Fusobacterium sp. D11]
 gi|289765859|ref|ZP_06525237.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289717414|gb|EFD81426.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 235

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQ 79
                   +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    + +  
Sbjct: 15  LVVEASDINHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            +V    S +K +++D  IQK  E+G+  I P+  +          DR  T +  A +QC
Sbjct: 74  IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197
             +    I     ++ L  N      I+   E        + L  +   P  +  +IG E
Sbjct: 134 QGVVPTVIDEIKKIDKL--NLKDYDLILVPYENEKKVFIKDILKNLKVKPTKILYIIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L        +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225


>gi|238809922|dbj|BAH69712.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 232

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 20/241 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M   + + R FV      +   + S +  +++  V R+++ +   L N +D  +  K+  
Sbjct: 1   MNERNKMHRFFV-TKKSDQDHFELSKEILNHI-KVARVEKDE--FLCNYQDIFYKCKLE- 55

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
              +    +E    +      +      IK  R ++++QK+ E+G+  I P  ++YT   
Sbjct: 56  --NNKALIIEKLDINHEFNKPIILAAPIIKIKRFEWILQKATELGVTTIIPFASKYTDAK 113

Query: 121 HYNMD------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
               +      R      +AAEQ     +P++     LE ++K +    + +        
Sbjct: 114 ILKYEFNSKQNRFNEIIKNAAEQSFRNIIPYLTKIMNLEEIIKTYPTMQKYLAY------ 167

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           EN  +K + I +  +  +++GPEGG+  EE E       +   SLG  ILR++TA +  +
Sbjct: 168 ENQDQKNNIITYPTSSILIVGPEGGFSPEEIELAKENN-IKITSLGKTILRAETACLYML 226

Query: 235 A 235
           A
Sbjct: 227 A 227


>gi|295838961|ref|ZP_06825894.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|197695517|gb|EDY42450.1| RsmE family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 251

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 11/245 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
            RL               G +  +   V R++ G+ ++L +G        ++      R 
Sbjct: 9   PRL--AEEAVPGGVFVLDGPEGRHAVSVKRLRPGEELVLSDGAGRWAPCVVTAAEGKDRL 66

Query: 68  KVEYQS--RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            VE             +  + +  K +R +  ++   E G+ A+ P            + 
Sbjct: 67  SVEVGELREEPVPSPRLVVVQALPKGDRGELAVETMTETGVDAVVPWQAERCVTQWRGER 126

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              ++ + R     A +Q      P +    + +            V   E  G+ ++  
Sbjct: 127 GAKSLAKWRATAREAGKQSRRPRFPEVAEAVSTKEAAALLSRAALAVVLHEDAGTASTPL 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +    ++ +++GPEGG    E     +        LGP +LR+ TA  AA+AL+  
Sbjct: 187 ATLPLPPSGDIVLVVGPEGGVAPAELTAFTAAG-AHVCRLGPSVLRTSTAGTAAVALLSG 245

Query: 240 ICGDW 244
             G W
Sbjct: 246 RTGRW 250


>gi|304439565|ref|ZP_07399470.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371944|gb|EFM25545.1| RsmE family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 227

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 15/216 (6%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83
            S +  H+L +V+R+   +   + +     + +    +       +     S   +  + 
Sbjct: 12  LSEENRHHLLNVVRLNPDEEFEIVS-SGKVYRA----IYDGELKILREVENSHETRLRIN 66

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQC 138
              + IK ++ +  ++K+ E+G+ +I P+I + T           + R +    SAA+Q 
Sbjct: 67  LYMALIKQDKFELALEKTTEVGVSSITPIIFKRTVVNIKGKEDKKLLRWQKILESAAKQS 126

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
               +P I  P  LE    N +    ++   E   +    + L     I  ++ILIGPEG
Sbjct: 127 KRDIIPSINNPEKLE----NINFKGTLIVPYEGAENLYIDDVLKNTKGIEEISILIGPEG 182

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           G+   E E L ++     ++LG RILR++TAA+ A 
Sbjct: 183 GFDESEIEYLKTMG-CKIVTLGTRILRAETAAIVAC 217


>gi|237744246|ref|ZP_04574727.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431475|gb|EEO41687.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 235

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQ 79
                   +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    + +  
Sbjct: 15  LVVEASDINHIKNVFRKVKGDRIRAVDGTN-EYLCEIEKIDEKEIKLKILEKIEDNFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            +V    S +K +++D  IQK  E+G+  I P+  +          DR  T +  A +QC
Sbjct: 74  IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWGTISKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPE 197
             +    I     ++ L  N      I+   E        + L  +   P  +  +IG E
Sbjct: 134 QGVVPTVIDEIKKIDKL--NLKDYDLILVPYENEKKIFIKDILRNLKVKPTKILYIIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L        +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDYLKESG-AKIISLGKRILRAETAAIV 225


>gi|298243472|ref|ZP_06967279.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM
           44963]
 gi|297556526|gb|EFH90390.1| protein of unknown function DUF558 [Ktedonobacter racemifer DSM
           44963]
          Length = 273

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 98/256 (38%), Gaps = 23/256 (8%)

Query: 7   LKRLFVDFPLCI-------KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI- 58
           + R F++                    +  H +  VLR+   + ++L +    E L  + 
Sbjct: 1   MHRFFIEEAQVEPALLRQKGMAILLPENVAHQVRDVLRLALDERLVLLDNSGEETLCAVK 60

Query: 59  -SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
            S  G+ +   +E Q        +V      +K+ R +++++K  E+G+    P   + +
Sbjct: 61  KSARGEVVVEVLERQRGKSESPVEVMLCQGMLKSARFEWILEKGTELGVSTFLPTTCQRS 120

Query: 118 -----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                +       R       A+EQC    +P + P   L  +L +       +   E  
Sbjct: 121 TTGLEEAGTSKQKRWLRIIQEASEQCGRARVPTLLPVRPLMHVLGDIPEGTLALMPWEEE 180

Query: 173 GSENSLEKLH--------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
            ++     L         A      V + IGPEGG+ +EE            ++LG R+L
Sbjct: 181 RTQTLRSVLREAMTNYEEAPTQRLRVMLFIGPEGGFMAEEVMMARRHG-AKIVTLGERVL 239

Query: 225 RSDTAAVAAMALVQAI 240
           R++TAA+A++A +   
Sbjct: 240 RAETAAIASIANIMYE 255


>gi|153003145|ref|YP_001377470.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026718|gb|ABS24486.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5]
          Length = 246

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L+R+ +        +   + +  HYL  VLR+  G  + +F+G+ G W +++    ++  
Sbjct: 3   LRRVHLPPQRFEGERAALTPEARHYLRDVLRLGPGAEVEVFDGRGGAWAARVDAAYEA-- 60

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
             +  +       +++  + +  K  ++D ++QK+ E+G   + P     +         
Sbjct: 61  LLLGERRAQGGAAAEIWLVAALAKGEKMDLVVQKATELGAAGVAPFAAERSVVRLEPDKG 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R R     AA QC    +P +  P  L  +L         +           +  
Sbjct: 121 EERARRWRRIAEEAARQCGRADVPEVRAPAPLAGVLAALPPGALAIAL---QPGGPPVLA 177

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L  +A     AI +GPEGG    E     +       +LGPR+LR++TAA+ A+AL+QA 
Sbjct: 178 LEPVAARAYAAI-VGPEGGLTDVELAACDAAGARRA-ALGPRVLRAETAAIVAVALLQAR 235

Query: 241 CGD 243
            GD
Sbjct: 236 FGD 238


>gi|86156675|ref|YP_463460.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773186|gb|ABC80023.1| hypothetical protein Adeh_0247 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 240

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L+R+ +      + +   + +  HYL  VLR+  G  + LF+G+ G W + +    +++ 
Sbjct: 3   LRRVHLPPERIGEGRAALTDEARHYLRDVLRLAPGAAVELFDGRGGAWEATVLDGFEALA 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +        V  + +  K  ++D ++QK+ E+G   I P     +      +  
Sbjct: 63  LGARRAAPGGGAP--VWLLVALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKG 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R R     AA QC    +P +  P +LE  L                   +    
Sbjct: 121 EARAARWRRIAEEAARQCGRADVPEVRAPASLEAALAEVPAGFGAFVFHPGGAPLSEA-- 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             A +     A ++GPEGG    E+E   +       SLGPR+LR++TAA+ A+AL+QA 
Sbjct: 179 --APSPAGGYAAVVGPEGGLTDAERE-ACACAGARATSLGPRVLRAETAAIVAVALLQAR 235

Query: 241 CGD 243
            GD
Sbjct: 236 FGD 238


>gi|325955335|ref|YP_004238995.1| ribosomal RNA small subunit methyltransferase E [Weeksella virosa
           DSM 16922]
 gi|323437953|gb|ADX68417.1| Ribosomal RNA small subunit methyltransferase E [Weeksella virosa
           DSM 16922]
          Length = 237

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQ 76
                 + ++ H+   VLR KEGD + + NG+      +IS + K       +E Q   Q
Sbjct: 10  DNHATLNEEESHHFTKVLRGKEGDIVYITNGEGTLAKCEISQLSKKKVEANILEIQENFQ 69

Query: 77  TKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA 135
            K   +    +P K   RL++ ++K+ E+G+  I  + T +++  +  ++R+     +A 
Sbjct: 70  QKPYYLHVAIAPTKTMERLEFFLEKATEIGIDEITFLQTFHSERRNIKIERIEKIIQAAC 129

Query: 136 EQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           +Q      P +         +     + +  I    +    EN    L        + ++
Sbjct: 130 KQSLKAYTPKVNSLMKFHDFIDQDYQEFSKVIAHCRDDWDRENFKTYLST--QPSKIILM 187

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           IGPEG + +EE  +     F   +SLG +  R++TAA+ A+  V     DW
Sbjct: 188 IGPEGDFSAEEITSALQKNF-RGVSLGTQRFRTETAALQAVFAV-----DW 232


>gi|145356785|ref|XP_001422606.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582849|gb|ABP00923.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 246

 Score =  188 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 19/248 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L R +VD           S ++  +    LR+K GD + + +G+    ++++  V   + 
Sbjct: 1   LHRFYVDADFARGAAVTLSREETRHATKALRLKPGDRLEVCDGRGTLGIARLCAVD-GVG 59

Query: 67  FKVEYQSRSQTKQ-----SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---- 117
             VE +             DV   F  +K  R D++++K  E+G   + P++T  +    
Sbjct: 60  ATVEVEEMVADALGSGTAWDVASAFGGLKGGRGDWLVEKCAELGARTLVPLLTTRSGAIG 119

Query: 118 ------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171
                         R      +A++Q   +    + PP  +E L +    +C        
Sbjct: 120 GGDRDGDKKRGREGRWGRVAHAASKQSLRVYGLQVAPPIGVEALCEEIAKDCGERLTLLA 179

Query: 172 CGSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                 +  +   +   + +  I+IGPEG +  EE + + +     P+ LG   LR +TA
Sbjct: 180 AAGAPPIADVARASGLDLRSGRIVIGPEGDFTDEELKAMIAAG-ARPVGLGSLRLRVETA 238

Query: 230 AVAAMALV 237
           A++A+A V
Sbjct: 239 AISALAAV 246


>gi|237737740|ref|ZP_04568221.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419620|gb|EEO34667.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 237

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 13/233 (5%)

Query: 12  VDFPLCIKTQGKASGD-QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70
           +     ++ +         ++L +V R+K  + +   +G+  E+L +++ + K     V 
Sbjct: 6   ISEENILENKIIIDEKGDVNHLKNVFRVKIDEKVRAVDGE-KEYLCRVAELDKKSVTLVI 64

Query: 71  YQSRSQTKQSDVQY--IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRV 127
            +       + V+       +K +++D  IQK  E+G+  I P+ T+          D+ 
Sbjct: 65  DEIFEDRFSTKVKIDAAIGILKNDKMDLTIQKLTEIGINKIIPLSTKRGVAKVSEKKDKW 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAI 184
                 A +QC  +    I   T +E L L+++D    +V     C  E +L+ L     
Sbjct: 125 DLIVREALKQCQGVKPLIIDEVTKIEKLKLEDYD----LVIVPYECEDEYTLKNLLRKQT 180

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             + +V  ++GPEGG+  EE E L        ++LG RILR++TA++    ++
Sbjct: 181 KELKSVLYIVGPEGGFDIEEIEYLKQKG-ANIVTLGKRILRAETASIVVGGVL 232


>gi|254422571|ref|ZP_05036289.1| conserved hypothetical protein TIGR00046, putative [Synechococcus
           sp. PCC 7335]
 gi|196190060|gb|EDX85024.1| conserved hypothetical protein TIGR00046, putative [Synechococcus
           sp. PCC 7335]
          Length = 247

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIR 66
           +R+ V      +     + +Q HYL  VLR+  GD  +  +G+  +WL  +S  V ++  
Sbjct: 3   QRITVTANQLKEECLLLTSEQIHYLRRVLRLNSGDRFIAQDGRGKQWLVMLSDQVDQASI 62

Query: 67  FKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
            +V     S        ++   +  K N  D +++++ E+G+  I P+++  T    +  
Sbjct: 63  EQVISADLSAVGPATGPLRLAAALPKGNSFDQVVRQATELGVTHIYPLMSDRTLLNPSAS 122

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R       A+EQC+  T P I+ PTTL+  +   + +           S + L K+ 
Sbjct: 123 RLTRWHRIAQEASEQCERATTPEIFSPTTLQQFVIESNWSGIRYICATRQNSPHLLSKIQ 182

Query: 183 ---AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                    +V +L+GPEGG+   E        +   +SLG  ILR+ TA+V A++LV A
Sbjct: 183 HDLVSVGSHDVTLLVGPEGGWTPGEITVATDSGY-EIVSLGTAILRAVTASVTALSLVGA 241


>gi|294785209|ref|ZP_06750497.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27]
 gi|294486923|gb|EFG34285.1| RNA methyltransferase, RsmE family [Fusobacterium sp. 3_1_27]
          Length = 235

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 8/209 (3%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYI 85
             +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    S +   ++   
Sbjct: 21  DINHIKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEINAG 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144
            S +K +++D  IQK  E+G+  I P+  +          DR    +  A +QC  +   
Sbjct: 80  ISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVVPT 139

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203
            I     ++ L  +      I+   E        + L  +   P  +  +IG EGG+  E
Sbjct: 140 AIDEVKKIDKL--DLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKE 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E + L        +SLG RILR++TAA+ 
Sbjct: 198 EIDYLKENG-AKIISLGKRILRAETAAIV 225


>gi|237742212|ref|ZP_04572693.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845485|ref|ZP_05550943.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|229429860|gb|EEO40072.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256719044|gb|EEU32599.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 235

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 8/209 (3%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYI 85
             +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    S +   ++   
Sbjct: 21  DINHIKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEIDAG 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144
            S +K +++D  IQK  E+G+  I P+  +          DR    +  A +QC  +   
Sbjct: 80  ISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDIISKEALKQCQGVVPT 139

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203
            I     ++ L  +      I+   E        + L  +   P  +  +IG EGG+  E
Sbjct: 140 AIDEIKKIDKL--DLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKE 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E + L        +SLG RILR++TAA+ 
Sbjct: 198 EIDYLKENG-AKIVSLGKRILRAETAAIV 225


>gi|297559680|ref|YP_003678654.1| hypothetical protein Ndas_0703 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844128|gb|ADH66148.1| protein of unknown function DUF558 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 245

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 96/242 (39%), Gaps = 9/242 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
             V+       +    G +  + A V R++EG+ + L +G+       ++ VG   I   
Sbjct: 6   FLVEAADLAADRVTVDGAEGRHAAVVRRIREGETVDLSDGRGLRARCTVTAVGGDHIVCA 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V  +      +  +  + +  K +R +  ++   E G  A+ P                 
Sbjct: 66  VVERREEPAPRPRLTVVQALPKGDRGELAVEMMTEAGADAVVPWAAERCVTRWKGDRAAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + + R     AA+Q     LP +        +++        V   E   S  S +   
Sbjct: 126 ALAKWRATAREAAKQARRARLPEVADLADRTAVVELLAGADLGVVLHEDGASRLS-QLEP 184

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +    +V +++GPEGG+   E E   +   V  L LGP +LR+ TA VAA++++QA  G
Sbjct: 185 PVGQDADVVVVVGPEGGFSDAELEAFDAAGAVRAL-LGPSVLRTSTAGVAALSVLQARTG 243

Query: 243 DW 244
            W
Sbjct: 244 RW 245


>gi|332526877|ref|ZP_08402970.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax
           benzoatilyticus JA2]
 gi|332111319|gb|EGJ11303.1| 16S ribosomal RNA methyltransferase RsmE [Rubrivivax
           benzoatilyticus JA2]
          Length = 242

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 18/238 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRF 67
           RL++D PL   +          +   V R++ G  ++LF+G   EW +++  +G+S +  
Sbjct: 4   RLYLDIPLAAGSTLALPPGAARH-VQVRRLQPGHALVLFDGGGAEWPAEVVAMGRSEVTV 62

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           +V E Q+  +               +R+D +++K+ E+G+ AI+P++   +      +  
Sbjct: 63  RVGEPQAVERELPFAATLAVGMPANDRMDALVEKATELGVAAIQPLVCERSVLRLDGERA 122

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSEN 176
                  +   ++A EQC    +P I P   L   L       D   +++ +    G+  
Sbjct: 123 ERKQAHWQAVAVAACEQCGRTRVPRIQPVRPLAAWLGALPAEQDLGTRLLLSPR-PGARP 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             E+L A A       L GPEGG     +E          + LGPR+LR+DTA +A +
Sbjct: 182 LAERLPAGAGFCT---LSGPEGGLSPA-EEAAAVAAGFAAVGLGPRVLRADTAPLAVL 235


>gi|306832638|ref|ZP_07465777.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304425246|gb|EFM28373.1| RsmE family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 247

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV              D   ++ +V+R+ E D ++L      + L+K+    +   
Sbjct: 1   MQQYFV-AGQAQDVVTITDKDTIKHMFNVMRLTENDEVVLVFDDHVKRLAKVIDSAEHRF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +    ++V  +    K ++L+++ QK  E+GM  +        V+    +  
Sbjct: 60  EIIEELDSNVELPAEVTIVAGFPKGDKLEFLAQKGTELGMAKLWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               D++   T+ AAEQ     +P +      E  L   +   +I  A E    E     
Sbjct: 120 AKKADKLAKITLGAAEQSKRNVIPEVTLFEKKEAFLAELEQFDRIFIAYEESAKEGETAV 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  +     +  + GPEGG   EE ET      +  + LGPRI+R++TA + A+A 
Sbjct: 180 LARELSQMKAGEKILFIFGPEGGISPEEIETFELKGGLK-IGLGPRIMRAETAPLYALAS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|46447268|ref|YP_008633.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400909|emb|CAF24358.1| hypothetical protein pc1634 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 240

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 7   LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
           +   R F    + +        +++H+LAHV+R K+G+ + L NGK     + +  + K 
Sbjct: 1   MPAERFFTSEEISLHQHVLLKDNEFHHLAHVMRAKKGERVELVNGKSILAQATVLDIHKG 60

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
                +++    +   S +    + +K +RL ++++K  E+G+        + +      
Sbjct: 61  QAVLLIDHIKTERMDSSRLILAQAYVKPDRLAFILEKGTELGVDEFWLFPGQLSSQKEIY 120

Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +R ++  I+A +QC  LTLP I      +  L  WD      F  +       L  
Sbjct: 121 PHQQERAQSLIIAAMKQCGRLTLPKIL----FKPALNQWDSIFSQAFFGDLDPHAPFLAA 176

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            +  +  P +    GPE G+   E++ L  +  V  + L   ILR+DTA++AA++++Q
Sbjct: 177 ANEGSSYP-IIFFTGPESGWSDAERQQLKKMG-VQGVRLHTNILRTDTASIAALSIIQ 232


>gi|289676397|ref|ZP_06497287.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae FF5]
          Length = 180

 Score =  187 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2   RLSRFFTETPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 65  IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           +  ++      Q +    +       +  R+D+ IQK+ E+G+  I P+++         
Sbjct: 61  VHVQLTESFAGQVESGLRIHLGQGLSRGERMDWAIQKATELGVSEITPIVSERCEVRLKD 120

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
           +         +   ISA EQC    +P I+ P  L   +K+ + + ++V      
Sbjct: 121 ERAEKRQAHWQQIAISACEQCGRSVVPVIHAPMPLAEWIKHTEADLKLVLHPVAA 175


>gi|42524645|ref|NP_970025.1| hypothetical protein Bd3271 [Bdellovibrio bacteriovorus HD100]
 gi|39576855|emb|CAE78084.1| Conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 253

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 117/248 (47%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R +++     + Q   +GD +H++  V R + G    +       +  ++++V K   
Sbjct: 1   MRRYWIEKKDLFQDQVNFTGDVFHHIFDVCRQEIGSKFEVLTEDSKAYFVEVTHVSKKNA 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
               +E +     K+  +  + S  +   +D +++K+VEMG+ +I+P  + ++      +
Sbjct: 61  TARVLEERIIPALKEPHLHLVLSLSRFPVMDAIMEKAVEMGVTSIQPFFSEFSFLRKGEK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCGSEN 176
            +    DR      SA +Q     L  ++P    E +  L N + +   +FA E   + +
Sbjct: 121 LSDNKTDRWDKIVKSATQQSGRGDLMKVHPAIPFEKISDLINRNGSGVGLFAYEGPSTLS 180

Query: 177 SLEKLHAI-----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
             E +  +     A I +V I++G EGG+   E E    L  + P++LGP++LR +TA +
Sbjct: 181 IKEYVSKVKADHPAGIKDVWIIVGSEGGFSHREVEEFQKLG-LHPVTLGPQVLRVETACM 239

Query: 232 AAMALVQA 239
             +++++ 
Sbjct: 240 TLVSVLKY 247


>gi|292669689|ref|ZP_06603115.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648486|gb|EFF66458.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 246

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++RLF    L    + + +G   H+LA V+R + GD++++           +    +   
Sbjct: 1   MRRLFYAGELA--EEIRITGGDAHHLARVMRAQIGDDVIVAGADGRAARMTVIAAARDAV 58

Query: 67  --FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---- 120
                EY ++ + + ++V    + +K  ++D+++QK+ E+G   I PV T +        
Sbjct: 59  TLALAEYIAQEEARGTEVFLAQALLKGEKMDFVVQKAAELGAAGIYPVKTEHVVVRYDAK 118

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW----DHNCQIVFADETCGS 174
                  R +     AA+QC    L  + P   L  LL +       +  IVF  E    
Sbjct: 119 KAAAKTARWQKIADEAAKQCGRSMLMPVAPIRPLPDLLVDARIFDPADTAIVFCYEQEHR 178

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           ++    L  I     V I +G EGG+ S E + + +     P+SLG  ILR
Sbjct: 179 QSVRTVLQTIKA-RRVVIFVGAEGGFSSAEADMICAAGG-QPVSLGRLILR 227


>gi|34763185|ref|ZP_00144151.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887154|gb|EAA24259.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 235

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 8/209 (3%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV-EYQSRSQTKQSDVQYI 85
             +++ +V R  +GD I   +G + E+L +I  +  K I+ K+ E    S +   ++   
Sbjct: 21  DINHIKNVFRKVKGDKIRAVDGAN-EYLCEIEKIDEKEIKLKILEKIKDSFSLDIEIDAG 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDILTLP 144
            S +K +++D  IQK  E+G+  I P+  +          DR    +  A +QC  +   
Sbjct: 80  ISILKGDKMDLTIQKLTELGINKIIPISVKRCIVKLDKKKDRWDIISKEALKQCQGVVPT 139

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGYHSE 203
            I     ++ L  +      I+   E        + L  +   P  +  +IG EGG+  E
Sbjct: 140 AIDEIKKIDKL--DLKDYDLILVPYENEKEIFIKDILRNLKVKPTKILYIIGAEGGFEKE 197

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           E + L        +SLG RILR++TAA+ 
Sbjct: 198 EIDYLKENG-AKIISLGKRILRAETAAIV 225


>gi|257125127|ref|YP_003163241.1| hypothetical protein Lebu_0332 [Leptotrichia buccalis C-1013-b]
 gi|257049066|gb|ACV38250.1| protein of unknown function DUF558 [Leptotrichia buccalis C-1013-b]
          Length = 237

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 8/216 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDV 82
                +++ +V R+  GD + + +G+  E+ +KI  + K       +E    S +   ++
Sbjct: 22  EKSDCNHIQNVYRLNIGDELRIIDGE-YEYFTKIIEISKKEVAVKILEKNEDSYSLNINI 80

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHYNMDRVRTYTISAAEQCDIL 141
                 +K ++++  IQK  E+G+ +I P+ T       +   ++  T      +QC  +
Sbjct: 81  DVAMGILKNDKMNLAIQKLTEIGVKSIIPLKTERVVVRINEKKEKWDTVARETLKQCRGV 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
               I P   L  +  ++    +I+FA E      SL ++       N+  +IGPEGG  
Sbjct: 141 KFTEILPVKKLAEI--DYKKYDKIIFAYENSNESKSLSEIIKQKD-KNILYIIGPEGGIA 197

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            EE + L +   +  +SLG RILR++TAA+    ++
Sbjct: 198 QEEVDFLKNNKAIE-ISLGKRILRAETAAIVVCGII 232


>gi|256827194|ref|YP_003151153.1| hypothetical protein Ccur_07670 [Cryptobacterium curtum DSM 15641]
 gi|256583337|gb|ACU94471.1| conserved hypothetical protein TIGR00046 [Cryptobacterium curtum
           DSM 15641]
          Length = 260

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 9   RLFVD-FPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-G 62
           R F+    L  + +     + S +  H+ A VLR+  G+++ + +     +  +I     
Sbjct: 5   RFFLPSQVLACEQESPFILRLSAEDEHH-ARVLRLAAGEHVAVVDAAQDYFECEIVSFYA 63

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +  ++   + +   +  V  +    K +++D +I+ + E+G+    P+    +     
Sbjct: 64  AGMCVRIAAHNSASVDRPQVCLLQGISKGDKVDVVIRHATELGVTQFVPLACERSVVKLD 123

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCG-- 173
               H  + R R    SAA Q     +P +  P   + + +   D  C ++  +E  G  
Sbjct: 124 GDKAHKRVGRWRAIAKSAAMQSGQPRIPEVTLPYRCDEVAEILSDATCILICWEEAHGVG 183

Query: 174 -SENSLEKLH---AIAHIPNVAILIGPEGGYHSEEKETLHSLP-FVTPLSLGPRILRSDT 228
            SE   + L      A    VA++IGPEGG    E +    +      ++LG  ILR++T
Sbjct: 184 VSEAIAQALQLSGQTAAHARVALVIGPEGGLTQHEVDYFLHMGPPAYAVTLGSSILRTET 243

Query: 229 AAVAAMALVQAICG 242
           A + A AL  +  G
Sbjct: 244 AGIVAPALALSTLG 257


>gi|323342116|ref|ZP_08082349.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464541|gb|EFY09734.1| hypothetical protein HMPREF0357_10529 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 233

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 112/241 (46%), Gaps = 21/241 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ F++         + S DQ H    VLRM+EGD+I L + +    ++  S+   ++ 
Sbjct: 1   MQQFFIESI----EDLQLSADQLHQCRKVLRMQEGDSIRLVDHRGNGVIA--SFTDDTLT 54

Query: 67  -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQN 119
              V+       K+  ++ + S I++ RL++MIQK+ E G+  I        V+  + + 
Sbjct: 55  HLTVKEPIEWNEKKFRLRIVASLIRSERLEWMIQKACECGVDEIILYQSQHGVVRDFGKR 114

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSL 178
           +   M+R+      A+EQ        +    TL+ L +   D N      DE        
Sbjct: 115 SDRKMERLNLIAKEASEQSYRQYEVPVKGIATLDDLPQYQSDLNLYADIGDEAHLIHTVR 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E         ++ +L+GPEGG+ ++E+    ++ +   +SLG  +LR++TA++    +V 
Sbjct: 175 E------DTKSITVLVGPEGGFSNDERSKFEAMGYRQ-VSLGDNVLRAETASIYICNIVS 227

Query: 239 A 239
           A
Sbjct: 228 A 228


>gi|83814115|ref|YP_446222.1| hypothetical protein SRU_2116 [Salinibacter ruber DSM 13855]
 gi|294508153|ref|YP_003572211.1| hypothetical protein SRM_02338 [Salinibacter ruber M8]
 gi|83755509|gb|ABC43622.1| conserved hypothetical protein TIGR00046 [Salinibacter ruber DSM
           13855]
 gi|294344481|emb|CBH25259.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 239

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 5/231 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +         +     ++  +L  VLR + GD++ + +G  G + ++I +VG       
Sbjct: 5   FYAPPSAIRAGRVVLPEEEARHLRTVLRGEAGDDMTVVDGDGGWYRARIDHVGPDQVVGT 64

Query: 70  EYQSRSQ--TKQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
               R        DV      +K   R +  ++K+VE+G   + P+ TR T+      +R
Sbjct: 65  ITDERDNVGEPDMDVTVALGILKKRSRFETFVEKAVELGARRVVPLRTRRTERDAIREER 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +R   ++A +QC    LP +  P ++E LL       ++V       S    +       
Sbjct: 125 LRNVMVAAMKQCRRSRLPALAAPQSIEPLLAGDVGETRLV-CHAGEESVPIQQAAADTRQ 183

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +  +L+GPEGG+    +         TP+SLG R LR++TA +AA+  V
Sbjct: 184 RASALVLVGPEGGFAPP-EVEAAVEAEATPVSLGARRLRAETAGIAALHAV 233


>gi|308189971|ref|YP_003922902.1| hypothetical protein MFE_04220 [Mycoplasma fermentans JER]
 gi|319777253|ref|YP_004136904.1| chp protein [Mycoplasma fermentans M64]
 gi|307624713|gb|ADN69018.1| conserved hypothetical protein [Mycoplasma fermentans JER]
 gi|318038328|gb|ADV34527.1| CHP protein [Mycoplasma fermentans M64]
          Length = 226

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 20/235 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV      +   + S +  +++  V R+++ +   L N +D  +  K+     +  
Sbjct: 1   MHRFFV-TKKSDQDHFELSKEILNHI-KVARVEKDE--FLCNYQDIFYKCKLE---NNKA 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD- 125
             +E    +      +      IK  R ++++QK+ E+G+  I P  ++YT       + 
Sbjct: 54  LIIEKLDINHEFNKPIILAAPIIKIKRFEWILQKATELGVTTIIPFASKYTDAKILKYEF 113

Query: 126 -----RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R      +AAEQ     +P++     LE ++K +    + +        EN  +K
Sbjct: 114 NSKQNRFNEIIKNAAEQSFRNIIPYLTKIMNLEEIIKTYPTMQKYLAY------ENQDQK 167

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            + I +  +  +++GPEGG+  EE E       +   SLG  ILR++TA +  +A
Sbjct: 168 NNIITYPTSSILIVGPEGGFSPEEIELAKENN-IKITSLGKTILRAETACLYMLA 221


>gi|156742110|ref|YP_001432239.1| 16S ribosomal RNA methyltransferase RsmE [Roseiflexus castenholzii
           DSM 13941]
 gi|156233438|gb|ABU58221.1| protein of unknown function DUF558 [Roseiflexus castenholzii DSM
           13941]
          Length = 257

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 11/236 (4%)

Query: 3   IHSHLKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           + S+  R FVD       + +    +  H LA+VLR+  G+ ++L +G+  ++   +  V
Sbjct: 9   VQSNTYRFFVDPAAFDTERVRLFDPELGHQLANVLRLGRGERVVLLDGEGWQYTVMLETV 68

Query: 62  GKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
            +        +SR       +  +      I+  R ++ +QK VE+G+ A  P +   + 
Sbjct: 69  DRRGTVNGVIESREVAGGEPRLALTVYLPLIRAERFEWALQKGVELGVAAFVPTVCARSI 128

Query: 119 NT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           +       + R R     AAEQ     LP + P  T       +  +   +   E   + 
Sbjct: 129 DAAPDERRLARWRRIIREAAEQSRRGRLPRLAPSLTFNEACTQFTLHSPALLLWEGDNAT 188

Query: 176 NSLEKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                LHA+    +   + I  GPEGG  ++E++       +  +SLGPR LR++T
Sbjct: 189 PLAGALHALRRDTSPAALGIFSGPEGGLTNDERQWAERHG-IMIVSLGPRTLRAET 243


>gi|47459063|ref|YP_015925.1| hypothetical protein MMOB2280 [Mycoplasma mobile 163K]
 gi|47458392|gb|AAT27714.1| expressed protein [Mycoplasma mobile 163K]
          Length = 223

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 18/236 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV     I           +++  VLR+K      + N  +  +  K+      I 
Sbjct: 1   MHRFFVTKK--INNTFILDEKVLNHI-KVLRIKND--FFICNYNNEFYKCKLE---NKIA 52

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----Y 122
             VE  +     +++V    + I     + ++QK+ E+G   I P I++++         
Sbjct: 53  IIVEKLNIDNEFKNEVVLAMALINPKNFELVLQKATELGATKIIPFISKFSNFKKDFALK 112

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R     ++A+ Q     +P +  P     +L + ++  + +  + T  S+     L+
Sbjct: 113 KIERWNEIILNASSQSFRNKVPILEKPLDFSQVL-DLNYEYKYIAYENTDLSKE----LN 167

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                 N   +IGPEGG+  +E +T     + T +SLG RILRS+TAA   ++ V 
Sbjct: 168 TNLFCSNSIFIIGPEGGFFQDEIKTAIEKGWKT-ISLGKRILRSETAAFFVLSRVN 222


>gi|296328429|ref|ZP_06870955.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154503|gb|EFG95295.1| RsmE family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 235

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQ 79
                   +++ +  R  +GD I   +G + E+L +I  +  K I+ K+ E      +  
Sbjct: 15  LVIDAGDINHIKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLKILEKIEDKFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            +V    S +K +++D  IQK  E+G+  I P+  +          DR  T +  A +QC
Sbjct: 74  IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTISKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197
             +    I     +  L  N+     I+   E        E L  +      +  +IG E
Sbjct: 134 QGVVPTVIDEIKKINKL--NFKDYDLILVPYENEKEIFIKEILRDLKIKPSKILYIIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L        +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225


>gi|19704550|ref|NP_604112.1| putative cytoplasmic protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714836|gb|AAL95411.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 235

 Score =  185 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 8/215 (3%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKV-EYQSRSQTKQ 79
                   +++ +  R  +GD I   +G + E+L +I  +  K I+ K+ E      +  
Sbjct: 15  LVIDAGDINHIKNAFRKVKGDKIRAVDGAN-EYLCEIEKIEDKEIKLKILEKIEDKFSLD 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQC 138
            +V    S +K +++D  IQK  E+G+  I P+  +          DR  T +  A +QC
Sbjct: 74  IEVDAGISILKGDKMDLTIQKLTELGINKIIPISVKRCVVKLDKKKDRWDTISKEALKQC 133

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPE 197
             +    I     +  L  N+     I+   E        E L  +      +  +IG E
Sbjct: 134 QGVVPTVIDEIKKINKL--NFKDYDLILVPYENEKEIFIKEILRDLKIKPSKILYIIGAE 191

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           GG+  EE + L        +SLG RILR++TAA+ 
Sbjct: 192 GGFEKEEIDYLKENG-AKIISLGKRILRAETAAIV 225


>gi|322507766|gb|ADX03220.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
          Length = 191

 Score =  185 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 16/194 (8%)

Query: 57  KISYVGKSIRFKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
            ++ + K   F          +             K +R+DY IQK+ E+G+  I+ + +
Sbjct: 2   TLTEINKKNAFVTIENFNPVNRNAPFKAILGQVMSKGDRMDYAIQKATELGVSKIQLLTS 61

Query: 115 RYTQ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVF 167
              +           +D  +   I+A EQC +  +P +  P +L   L + D    + V 
Sbjct: 62  ERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLNLVPEVLAPISLHEWLNSSDLPTSKFVL 121

Query: 168 ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           A E    +   + L  I   P +A+LIGPEGG    E    +   F+    +G R+LR++
Sbjct: 122 APE----KEQKDVLAGIQ--PELALLIGPEGGLSENEITQANQAGFMN-WCIGDRVLRTE 174

Query: 228 TAAVAAMALVQAIC 241
           TA V A++++    
Sbjct: 175 TAPVVALSILNYRF 188


>gi|299144167|ref|ZP_07037247.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518652|gb|EFI42391.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 238

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 15/234 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           + R F       +     S +  H+   VLR++E + I+     +G + +      G  I
Sbjct: 1   MYRFF--ENANFENTITLSKENSHHYKTVLRIRE-EEIVEVGANNGVFKAIFDSCCGDFI 57

Query: 66  RFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----N 119
             K VE  S  +     +  +   +K +++D  ++ SVE+G+  I P+ T+         
Sbjct: 58  ILKKVEEVSAERESDVKLILLQGILKGDKMDQALKSSVEVGVCEIYPLNTKRVVAQIDHK 117

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            +  + R +    +AA+Q     +P +  P  LE + +  ++   IV  +          
Sbjct: 118 EYKKVQRWQRVVEAAAKQSKRDYIPRVNTPIDLEGIEEILENRELIVPYENEDDDRLVDI 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           KL       NV ++IGPEGG+   E + L SL     +SLG RILR++TAAV A
Sbjct: 178 KL----ENKNVILVIGPEGGFEETEIDYLKSLG-AKIVSLGNRILRAETAAVCA 226


>gi|332296139|ref|YP_004438062.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium
           narugense DSM 14796]
 gi|332179242|gb|AEE14931.1| Ribosomal RNA small subunit methyltransferase E [Thermodesulfobium
           narugense DSM 14796]
          Length = 240

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 15/243 (6%)

Query: 8   KRLFVDFPLCIKT----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            RL+++             +   D+ HYL  VLR+K+ D +++ +G    + S++    K
Sbjct: 4   PRLYINKNRIANPVEGFSIELDKDEKHYLFKVLRLKDDDEVVVLDGAGNIFRSRV----K 59

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY---TQNT 120
                +  +S ++  + ++       K ++   +I+   E+G+     +        + +
Sbjct: 60  GDCIILGEKSDAKEPKLNLTLFQFLPKGDKFSEIIRMCTELGVKKFVLIYGERNSYGEVS 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R +     AAE      +P I  P  L  +         +VF +    S  S++ 
Sbjct: 120 LNKIKRWQRIAKEAAELAGRGVVPEILGPYKLFKVPDELFKGQIVVFWE---NSNQSIKD 176

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L   A   ++++ IG EGG    E E L S      LSLG RILR  TA+V+A +++  +
Sbjct: 177 LFKSAISEDLSLFIGAEGGISLNEIEFLKSKGAY-VLSLGERILRVQTASVSACSIMFYL 235

Query: 241 CGD 243
             D
Sbjct: 236 SND 238


>gi|296170596|ref|ZP_06852179.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894760|gb|EFG74486.1| RsmE family RNA methyltransferase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 240

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 13/238 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +VD    I       GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +
Sbjct: 6   FYVDALPDIGALAAVDGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V  +      +  V  + +  K+ R +  ++ + E G  A       R V +        
Sbjct: 66  VLERWTVAPARPPVTVVQALPKSERSELAVELATEAGADAFLAWQSARCVASWQGPRVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179
            + R R    SAA Q     +P +    +   L   ++       +V A     S+   +
Sbjct: 126 GLRRWRAVARSAARQSRRAHIPAVDGVLSTAELTGRVRAASAAGSVVLALHESASDRLAD 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               +A   +V +++GPEGG   EE   L     V  + LGP++LR+ TAA  A+  +
Sbjct: 186 --SHVAQADSVWLVVGPEGGIAPEEIAALTDAGAV-AVGLGPQVLRTSTAAAVALGAL 240


>gi|225873892|ref|YP_002755351.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791516|gb|ACO31606.1| conserved hypothetical protein TIGR00046 [Acidobacterium capsulatum
           ATCC 51196]
          Length = 243

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 13/218 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ 76
            +     +G+Q  +L  VLR + G    +  G D  W   I+ + G ++RF +  +  + 
Sbjct: 12  DEATASLTGEQASHLIRVLRAQPGMEFDIVAG-DRVWHGVIAGITGDAVRFNLVAEVEAD 70

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYT 131
                +  + +  K +R+++ I+K+ E+G+  I+PVI R ++          ++R R   
Sbjct: 71  PALP-ITLLLAVFKFDRMEWAIEKATELGVERIQPVIARRSEKHLAQAAAARVERWRRIA 129

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH----I 187
             AA+Q     +P I  P  L+  ++    + + + A++   +        A+A     I
Sbjct: 130 REAAKQSRRSDIPEIDEPLPLKTAVRQPGEHLRFLLAEQERSTTFRFALGEALAQAGDEI 189

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           P + I +GPEGG+ +EE+    +  +   +SLGPRILR
Sbjct: 190 PKIEIAVGPEGGWTAEEEALFDAEGW-KAVSLGPRILR 226


>gi|116785897|gb|ABK23900.1| unknown [Picea sitchensis]
          Length = 301

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 9/228 (3%)

Query: 7   LKRLFVD-FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R + +  P       +  GD++ ++   LR+   D + LFN + G     +  V +S 
Sbjct: 57  LPRFYSEVLPAGKDKIVRIEGDEFWHMTKALRLGVQDRVELFNARGGLVEGVVLRVERSS 116

Query: 66  RFKVEYQSRSQTKQSDVQYI----FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120
              V  +       + VQ+     F  +K  R D++I+K  E+G  ++ P++T  +   +
Sbjct: 117 ADIVALEEPLLLTPTGVQWHVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSTLIS 176

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R +   ++A +QC  L    +  PT +E +L   + +     A     +   +E 
Sbjct: 177 GNRVERWQRVMLAAIKQCQRLHQMVVKTPTGIESILPRIETSSVSFLA--MAEATPIVEV 234

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L  +       +++GPEG +  +E   L     + P+ LGP  LR +T
Sbjct: 235 LPKVDKKDGGLLIVGPEGDFTDKEVRALTEAGAI-PVGLGPCRLRVET 281


>gi|226360380|ref|YP_002778158.1| 16S ribosomal RNA methyltransferase RsmE [Rhodococcus opacus B4]
 gi|226238865|dbj|BAH49213.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 253

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 100/245 (40%), Gaps = 13/245 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+D    + +     G +  + A V R+  G+ I+L +G+ G   ++++  GK  +   
Sbjct: 6   FFLDPLPEVGSTAVLDGPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAGKDRLELT 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  + +       V  + +  K  R +  ++ + E G+ AI P  +              
Sbjct: 66  VHDRRQVSAPSPSVTVVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            + R R+  ++AA+Q     +P +        +  +++       +V       ++   E
Sbjct: 126 GVARWRSAALAAAKQSRRAIVPAVSELHRTAGMLAVVREVIGRGGVVAVLHEAATQGLAE 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +     + +++GPEGG   +E   L     V P+ LGP +LR+ TAA  A+  +  
Sbjct: 186 L--PLRSAAEIVLVVGPEGGISEDEITALTEAGAV-PVLLGPHVLRTSTAAAVALGAIGV 242

Query: 240 ICGDW 244
           +   W
Sbjct: 243 LTDRW 247


>gi|111018255|ref|YP_701227.1| hypothetical protein RHA1_ro01245 [Rhodococcus jostii RHA1]
 gi|110817785|gb|ABG93069.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 253

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 17/247 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+D    + +     G +  + A V R+  G+ I+L +G+ G   ++++   K  +   
Sbjct: 6   FFLDPLPEVGSTAVLDGPEGRHAATVRRIGVGERIVLADGRGGLADTEVTAAAKDRLELT 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  + +       V  + +  K  R +  ++ + E G+ AI P  +              
Sbjct: 66  VHKRRQVPAPSPSVTVVQALPKAERSELAVELATEAGVDAIVPWQSSRCVARWEGPKVEK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----NWDHNCQIVFADETCGSENS 177
            + R R+  ++AA+Q     +P +        +L              V  +        
Sbjct: 126 GVARWRSAALAAAKQSRRAIVPEVSELHRTAEMLAVVREVVGRGGVVAVLHEAATQGLAE 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     +     + +++GPEGG   EE   L     V P+ LGP +LR+ TAA  A+  +
Sbjct: 186 LP----LRSAAEIVLVVGPEGGISEEEITALTDAGAV-PVLLGPHVLRTSTAAAVALGAI 240

Query: 238 QAICGDW 244
             +   W
Sbjct: 241 GVLTDRW 247


>gi|296110360|ref|YP_003620741.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154]
 gi|295831891|gb|ADG39772.1| hypothetical protein LKI_01145 [Leuconostoc kimchii IMSNU 11154]
          Length = 247

 Score =  183 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 16/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           ++R F+            + DQ  + +   VLR + G      +      + ++  +   
Sbjct: 1   MQRYFLKQA-IDDDHIVLTHDQDIFKHFGKVLRARVGSQAEFVSRTKKVVVGEVIAIDSE 59

Query: 65  I--RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP-----VITRYT 117
                 V   + +     +V  I SP+K +R D+ +QK+ E+G+  I        +  + 
Sbjct: 60  TMTLAVVSRLNDAVELPIEVTMIVSPLKNDRSDWFVQKATELGVNRIIFTNMSRTVADWQ 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       R++    +AAEQ   L +P +      E +++       IV  +E+      
Sbjct: 120 KQQSKKGLRLQKIAEAAAEQSHRLMVPMVD-FLPWEEVVR-LPKKAGIVAWEESARQGEV 177

Query: 178 LEKLHAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
              +  I  +P    V +L+GPEGG    E   L    +     LGPRILR++TA +  +
Sbjct: 178 ATLVKVINQLPKEAHVHVLLGPEGGLTLSEINLLIENGY-QAAGLGPRILRAETAPLYVL 236

Query: 235 ALVQAI 240
           + +  +
Sbjct: 237 SAISVL 242


>gi|320547793|ref|ZP_08042077.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447553|gb|EFW88312.1| RsmE family RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 246

 Score =  183 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 97/246 (39%), Gaps = 14/246 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +++ FV      +     +  D   ++ +V+R+ E + ++L      + L+K+    +  
Sbjct: 1   MQQYFV--AGQAQDVITITDKDTVKHMFNVMRLTEDEEVVLVFDDHIKRLAKVVDSAEHR 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQN 119
              ++  + +     +V       K ++L+++ QK  E+GM  +        V+    + 
Sbjct: 59  FEIIKELNSNVEMPVEVTIAAGFPKGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN--- 176
                D++    I AAEQ     +P +         L   D   +I  A E    E    
Sbjct: 119 LAKKADKLAKIAIGAAEQSKRNVIPGVTLFDKKAAFLAELDQFDKIFIAYEESAKEGETA 178

Query: 177 -SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
               +L  +     +  + GPEGG   +E         +  + LGPRI+R++TA + A++
Sbjct: 179 ILARELSQVKAGEKILFIFGPEGGISPDEIVAFEEKGGLK-IGLGPRIMRAETAPLYALS 237

Query: 236 LVQAIC 241
            V    
Sbjct: 238 SVSYAL 243


>gi|256375381|ref|YP_003099041.1| hypothetical protein Amir_1243 [Actinosynnema mirum DSM 43827]
 gi|255919684|gb|ACU35195.1| protein of unknown function DUF558 [Actinosynnema mirum DSM 43827]
          Length = 244

 Score =  183 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 14/243 (5%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69
           F+   L   +     G +  + A V R++ G+ ++L +G   +   +I+   K S+R +V
Sbjct: 6   FLVESLPTGSDAVLDGPEGRHAATVRRLRAGEELVLSDGSGDQVRCEITEALKDSLRLRV 65

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHY 122
             +         V  + + +K  R +  ++ + E G+ A+ P                  
Sbjct: 66  VERWTVPEPGVRVVLVQALVKGERGELAVELATEAGVDAVLPWKAARCVAKWEDGPRGAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEF-LLKNWDHNCQIVFADETCGSENSLEKL 181
            + R R     AA+Q     +P +  P T +            +V  +       S+   
Sbjct: 126 ALGRWRATAREAAKQARRARVPEVGEPVTTKQLAALASRAAAVLVLHESAEVGIGSV--- 182

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            A+     V +++GPEGG   +E   L        + LGP +LR+ TA   A+  +  + 
Sbjct: 183 -ALPPSGEVLLVVGPEGGIAEQELSALVEAG-AHVVRLGPSVLRASTAGAVALGALGVLT 240

Query: 242 GDW 244
             W
Sbjct: 241 DRW 243


>gi|171778872|ref|ZP_02919934.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282518|gb|EDT47942.1| hypothetical protein STRINF_00793 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 12/245 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV              D   ++ +V+R+ E + ++L      + L+K+    +   
Sbjct: 1   MQQYFV-AGQAQDVVTITDKDTVKHMFNVMRLTEDEEVVLVFDDHIKRLAKVIDSAEHCF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             +E    +     +V       K ++L+++ QK  E+GM  +        V+    +  
Sbjct: 60  EIIEELDSNVEMPVEVTIAAGFPKGDKLEFLAQKGTELGMANLWAFPADWSVVKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN---- 176
               D++    + AAEQ     +P +         +   +   +I  A E    E     
Sbjct: 120 AKKADKLAKIALGAAEQSKRNVIPQVTLFEKRATFMAELEQFDKIFIAYEDSAKEGETAV 179

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L  +     +  + GPEGG   EE         +  + LGPRI+R +TA + A++ 
Sbjct: 180 LARELSQVKAGEKILFIFGPEGGISPEEIAAFEEKGGLK-IGLGPRIMRVETAPLYALSS 238

Query: 237 VQAIC 241
           V    
Sbjct: 239 VSYAL 243


>gi|257462827|ref|ZP_05627233.1| putative cytoplasmic protein [Fusobacterium sp. D12]
 gi|317060456|ref|ZP_07924941.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313686132|gb|EFS22967.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 237

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 20  TQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKV-EYQSRSQ 76
            +      +  H+L HV R++ GD +   +G D E++ +I   +   +  ++ E +  + 
Sbjct: 13  DEIILEKKEDLHHLLHVFRLEVGDKVRAVDG-DYEYICEIQKIIENKVHLQILEKKEDAF 71

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-VRTYTISAA 135
           +   ++      IK +++D+ IQK  E+G+ +I P I +              T      
Sbjct: 72  SLSVEIDAAICLIKNDKMDFCIQKLTELGIHSILPTIAKRCVVKLKEKKEKWNTIVKETM 131

Query: 136 EQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKLHA---IAHIPNVA 191
           +QC  +    I     L+ L L+N+D    ++     C  E+SL+ +     +     + 
Sbjct: 132 KQCQGVKPTQIQEIIDLKQLPLENYD----LILLPYECEEEHSLKHVLRNGLLGATKKIL 187

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +IGPEGG+  EE E L S      +SLG RILR++TAA+    ++
Sbjct: 188 YIIGPEGGFEKEEIEHLASKG-AKVVSLGKRILRAETAAIVVGGVL 232


>gi|228933130|ref|YP_377200.2| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9902]
          Length = 243

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 8/234 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59
           M+    L+RL +     + ++      D+ HYL  VLR++ GD + + +G    W +++ 
Sbjct: 1   MR---ELRRLLIQPDRFVGSELLTLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAELV 57

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ- 118
               +++ +     +       +    S I+    D +++ + E+G+ AI+P+    T  
Sbjct: 58  DEY-TVKTQPHPCEQVVQPHPRLGLAVSIIRRG-FDDVVRMACELGIDAIQPLRCERTVP 115

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
              +  DR  T    A EQC+ L  P +    +L+  L +      +             
Sbjct: 116 QAEHRPDRWNTIVREAVEQCERLWKPTVLELNSLDSWLNSCSGQKAVGVTRTPNVGPLKD 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                 A      +++GPEGG+   E E L+    V P+ LGP ILR+ TAAVA
Sbjct: 176 WFQQKAAPGQTTWLIVGPEGGWTVAELEALNDHS-VVPIHLGPSILRTSTAAVA 228


>gi|118468490|ref|YP_888775.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169777|gb|ABK70673.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 246

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            GD+ H+ A+V R++ G+ I L +G        +    K S+  +
Sbjct: 6   FYVDVLPGAGELAVVDGDEGHHAANVRRIRVGERIDLSDGAGTLAHCVVENTAKGSVSAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           +  Q      +  V  + +  K++R +  I+ + E G  A     +              
Sbjct: 66  ITEQVTLPPARPSVTVVQALPKSDRSELAIELATEAGADAFVAWQSARCVARWDGPKADK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R      SAA Q     +P +    +   LL+       +V A     +    E   
Sbjct: 126 GLRRWSAVARSAARQSRRAYIPTVTGVESTRDLLRRIASTDSVVLALHESATAPFAEI-- 183

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +A   +V ++IGPEGG   +E   L        + LGP +LR+ T
Sbjct: 184 PVAQSDSVILIIGPEGGIADDEIAALTDAG-AHAVRLGPTVLRTST 228


>gi|78169059|gb|ABB26156.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 259

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 7/230 (3%)

Query: 6   HLKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L+RL +     + ++      D+ HYL  VLR++ GD + + +G    W +++      
Sbjct: 19  ELRRLLIQPDRFVGSELLTLQNDESHYLRRVLRLRIGDPLAISDGCGQLWQAELV---DE 75

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQ-NTHY 122
              K +     Q  Q   +   +     R  D +++ + E+G+ AI+P+    T     +
Sbjct: 76  YTVKTQPHPCEQVVQPHPRLGLAVSIIRRGFDDVVRMACELGIDAIQPLRCERTVPQAEH 135

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
             DR  T    A EQC+ L  P +    +L+  L +      +                 
Sbjct: 136 RPDRWNTIVREAVEQCERLWKPTVLELNSLDSWLNSCSGQKAVGVTRTPNVGPLKDWFQQ 195

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             A      +++GPEGG+   E E L+    V P+ LGP ILR+ TAAVA
Sbjct: 196 KAAPGQTTWLIVGPEGGWTVAELEALNDHS-VVPIHLGPSILRTSTAAVA 244


>gi|257453135|ref|ZP_05618434.1| putative cytoplasmic protein [Fusobacterium sp. 3_1_5R]
 gi|257467389|ref|ZP_05631700.1| putative cytoplasmic protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918519|ref|ZP_07914759.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059670|ref|ZP_07924155.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685346|gb|EFS22181.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313692394|gb|EFS29229.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 236

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 13/230 (5%)

Query: 20  TQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKV-EYQSRSQ 76
            +      +  H+L HV R++ GD +   +G D E++ +I   +   +  ++ E +  + 
Sbjct: 13  DEIILEKKEDLHHLLHVFRLEIGDKVRAVDG-DYEYICEIQKIIENKVHLQILEKREDAF 71

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAA 135
           +   D+      IK +++D+ IQK  E+G+ +I P + +          ++  T      
Sbjct: 72  SLSVDIDAAICLIKNDKMDFCIQKLTELGIRSIIPTVAKRCVVKLKEKKEKWNTIVKETM 131

Query: 136 EQCDILTLPFIYPPTTLEFL-LKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAI 192
           +QC  +    I   T L+ L L+++D    ++     C  E+SL+ +  + +     V  
Sbjct: 132 KQCQGVKPTQIQEVTDLKKLPLEDYD----LILLPYECEEEHSLKYVLQNRVEKPRKVLY 187

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +IGPEGG+  EE + L S      +SLG RILR++TAA+    ++    G
Sbjct: 188 VIGPEGGFEKEEIQYLASKR-AEVVSLGKRILRAETAAIVVGGILVHEFG 236


>gi|262193422|ref|YP_003264631.1| hypothetical protein Hoch_0097 [Haliangium ochraceum DSM 14365]
 gi|262076769|gb|ACY12738.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365]
          Length = 250

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 18/232 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRF 67
           RLFV+         +  GD + YL  V R++ GD + LF+G   E  ++++ + G+  + 
Sbjct: 4   RLFVEPASLRAGAVEVCGDDHRYLFRVRRLRVGDAVTLFDGAGREADARVAAIDGERAQL 63

Query: 68  KV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +V E ++        V  + + IK +R+D+ +QK VE+G+  I PV +  T      +D 
Sbjct: 64  EVAEPRAVVAPSPCRVSVLPALIKGDRMDFCVQKLVELGVHEIAPVTSARTV---VKLDG 120

Query: 127 VRT---------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSEN 176
            R             +AA QC+  T+P I     LE  L +      +++          
Sbjct: 121 ARAARRRERFVDIARAAARQCERATVPEIAAIAPLEQALASRAQTPLKLILW--ARERSR 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            L  + A      V + +GPEGG+  EE E   +  F  P+ LG  +LR++T
Sbjct: 179 MLRDIVAQPLPAGVCVAVGPEGGFAPEEIEAAVAAGF-EPVGLGGHVLRAET 229


>gi|313888909|ref|ZP_07822569.1| RNA methyltransferase, RsmE family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845082|gb|EFR32483.1| RNA methyltransferase, RsmE family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 229

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 19/232 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F D             +  H+L +V+R+K+G+   +         +   Y G+ I+
Sbjct: 1   MYRFFEDREFQGN--MNLKEETLHHLKNVIRIKDGEVFQVVFEDGIFSFA---YEGEKIK 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTH 121
             +     S   +  +   F  +K N+ + +++ + E+G+    PVI   +     +   
Sbjct: 56  -NLGEVLESNESKVRLSLFFGILKNNKSEDVLRHATEIGVSDFYPVIMDRSISDISKKKE 114

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R +    SAA+Q     +P ++     + +L   + +  +V   E        +  
Sbjct: 115 KKLERFQKIVESAAKQSKRDVIPIVHDIIKTDDIL---NFSGDLVLCYEDENKTQLGDIT 171

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
            A+++  N+ ++IGPEGG    E E L        + LG RILR++TAA+ A
Sbjct: 172 KALSN--NIGLVIGPEGGISERELELLSEA---KKVGLGRRILRAETAAITA 218


>gi|238060562|ref|ZP_04605271.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149]
 gi|237882373|gb|EEP71201.1| hypothetical protein MCAG_01528 [Micromonospora sp. ATCC 39149]
          Length = 244

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 15/245 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           LF+   L        SG + H+ A V R++ G+ +LL +G+ G   + ++ VG+ ++  +
Sbjct: 5   LFLVDALPTGDSLTLSGPEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGRGTLDLR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
           V  +         +  +    K +R +  +Q   E+G+  I P            +    
Sbjct: 65  VTTRGYVDAHVPRLVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGERGVR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIY---PPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
             ++       AA+Q     LP +      +T     +        V  +E      + E
Sbjct: 125 AREKWVATAREAAKQARRAWLPVVAGSPDESTAAVAGRIAGAAAAFVLHEEAQERLATAE 184

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +     + +++GPEGG    E  T        P  LGP +LR+ TA VAA++ +  
Sbjct: 185 ----LPDAGEIVLVVGPEGGITDAELATFTEAG-ARPTRLGPSVLRTSTAGVAALSALSP 239

Query: 240 ICGDW 244
               W
Sbjct: 240 RLSRW 244


>gi|318041692|ref|ZP_07973648.1| hypothetical protein SCB01_08267 [Synechococcus sp. CB0101]
          Length = 255

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 10/230 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
                  S +   YL  VLR   GD   + +G    W +++    ++   +   Q     
Sbjct: 20  ADGVLGLSAEHSRYLCKVLRYGPGDRFAVVDGAGHLWEAELLDREQARMLQPLAQPLLSQ 79

Query: 78  KQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAA 135
            +     + +     R  + +++ +VE+G+  + P++   T        +R ++    AA
Sbjct: 80  PRDQPAVVLAAAVVKRDFELVVRMAVELGVDRLVPLLCERTAVQGQLRPERWQSIAEEAA 139

Query: 136 EQCDILTLPFIYPPTTLEFLLK-----NWDHNCQIVFADETCGSENSLEKL-HAIAHIPN 189
           EQC+ L LP I PPT L  LL            ++       G    +E L  + A +P+
Sbjct: 140 EQCERLWLPQIDPPTPLTELLSTDAATASVAAMRLWATTRQEGLPLLVEALASSAAQLPD 199

Query: 190 -VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            V +  GPEGG+   E+E      + +P+ LGP ILRS TAAVA  AL+ 
Sbjct: 200 QVWLACGPEGGWSPAEEEQALGCGW-SPVQLGPTILRSSTAAVAGAALIS 248


>gi|229493162|ref|ZP_04386954.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus
           erythropolis SK121]
 gi|229319893|gb|EEN85722.1| ribosomal RNA small subunit methyltransferase E [Rhodococcus
           erythropolis SK121]
          Length = 253

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 95/243 (39%), Gaps = 9/243 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+D    +       G +  + A V R+  G+ ++L +G+     ++++ VGK  +   
Sbjct: 6   FFLDPVPGVGEIAVLDGQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKDRLELL 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V      +  +  V  + +  K  R +  ++ + E G+ A+ P  +              
Sbjct: 66  VSDVQVLEQPKPLVTLVQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKL 181
            + R R+  +SAA+Q     +P I        ++    D   +         S  +    
Sbjct: 126 GVARWRSAAVSAAKQSRRAFVPEIAELHKTPAVIALVRDAVARGAVVAVLHESATTPLAG 185

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +A    V +++GPEGG    E   L      TP+ LGP +LR+ TA   A+  +  + 
Sbjct: 186 LPLASADEVFLVVGPEGGLDDSEISALSEAG-ATPVLLGPTVLRTSTAGAVALGAIGVLT 244

Query: 242 GDW 244
             W
Sbjct: 245 DRW 247


>gi|242279431|ref|YP_002991560.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio salexigens
           DSM 2638]
 gi|242122325|gb|ACS80021.1| protein of unknown function DUF558 [Desulfovibrio salexigens DSM
           2638]
          Length = 239

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 7/234 (2%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L   ++  P          G +  +L  VLR + GD + LF+G   + L  ++ + K
Sbjct: 1   MARLNSFYLP-PEDWDAPFILQGGEAKHLGKVLRTRVGDTVRLFDGCGRDGLFTVTEITK 59

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--H 121
           S       +        ++       K++R +++++KSVE+    +    + ++Q     
Sbjct: 60  SKVQLELNEEHFIADPRNLTLAIGWNKSSRRNWILEKSVELQTHGLIFYQSEFSQGKVPA 119

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +      ++AA+QC    LP +   P ++E L++        +F  E    +N    
Sbjct: 120 ETKESWNEKLVAAAKQCGNAWLPELQTVPGSIEKLIEFSASYDNKLFLYEKA--DNDTVP 177

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            +++    +   +IGPEGG+   E E L    F  P+SLG  ILR +TAA+  M
Sbjct: 178 NNSVFAAESTLAVIGPEGGFSPREAELLIENGF-KPVSLGSSILRWETAALLCM 230


>gi|297571544|ref|YP_003697318.1| hypothetical protein Arch_0977 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931891|gb|ADH92699.1| protein of unknown function DUF558 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 245

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 17/243 (6%)

Query: 11  FVDFPL---CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +VD  L   C+    +  GD+  + A V R + G+ I + NGK       ++ V KS   
Sbjct: 6   YVDPDLSAACVGETIRLDGDEARHAATVRRTRVGERIDIVNGKGLRATITVTDVAKSSLV 65

Query: 68  -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QN 119
             VE+ +        +  + +  K  R +  ++ + E G  A  P     +         
Sbjct: 66  GTVEHVANDPAHNPQITLVQALAKGGRDEQAVETATEYGADAFIPWQAERSIVSWSDPAK 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSEN 176
               + R      SAA+Q     +P +  P +   L   + +   +  +V+      +  
Sbjct: 126 ARKGVGRWEATAQSAAKQSRRSWIPTVDQPHSSASLACHIADCCADGGVVYICHESATTP 185

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +L + +    V I++GPEGG   +E E L +      + LG  +LRS TA   A+A+
Sbjct: 186 ITTQLDSSSR--KVMIVVGPEGGITDKELELLTNAGG-RVVLLGEHVLRSATAGPWAIAV 242

Query: 237 VQA 239
           ++A
Sbjct: 243 IRA 245


>gi|224060885|ref|XP_002300283.1| predicted protein [Populus trichocarpa]
 gi|222847541|gb|EEE85088.1| predicted protein [Populus trichocarpa]
          Length = 212

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 12/217 (5%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ----SDVQYIFS 87
           +  VLR+   D + LFNGK G     I  + ++    V  +             V   F 
Sbjct: 1   MTKVLRLGTNDRVELFNGKGGLIEGCIERIDRTGLDFVALEDPKLVPPLSTKWHVYAAFG 60

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFI 146
            +K +R D++++K  E+G  ++ P++T  + + +   +DR R   ++A +Q   L    +
Sbjct: 61  TLKGDRADWLLEKCTELGAHSVTPLLTERSPSISENRVDRFRRVILAATKQSQRLHEMIL 120

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            PPT +  LL     +     A  T G+   +  L +     +  +++GPEG +  +E  
Sbjct: 121 NPPTKIVGLL---PLSKLSFLA--TAGATPVVSVLTSSRKESSGLMIVGPEGDFTEKEVN 175

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +      + + LGP  LR +TA +A +A +  +  D
Sbjct: 176 MMMKAG-ASAVGLGPHRLRVETATMALLATLM-LWSD 210


>gi|58177000|pdb|1V6Z|A Chain A, Crystal Structure Of Tt1573 From Thermus Thermophilus
 gi|58177001|pdb|1V6Z|B Chain B, Crystal Structure Of Tt1573 From Thermus Thermophilus
 gi|85544471|pdb|2CX8|A Chain A, Crystal Structure Of Methyltransferase With Ligand(Sah)
 gi|85544472|pdb|2CX8|B Chain B, Crystal Structure Of Methyltransferase With Ligand(Sah)
 gi|160286352|pdb|2Z0Y|A Chain A, Crystal Structure Of Ttha0657-Sam Complex
 gi|160286353|pdb|2Z0Y|B Chain B, Crystal Structure Of Ttha0657-Sam Complex
          Length = 228

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
                  G     +  +L  VLR + GD   +F+G+  E L+++  +G  +R++V  + R
Sbjct: 6   AFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEERR 64

Query: 75  SQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTY 130
            + +   +V    + +K ++L  +++ + E+G   I+P++TR++   +     + R+R  
Sbjct: 65  PEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEXGEGKLRRLRAV 124

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            + AA+Q   + +P + PP  L+ + +        V          +      +     +
Sbjct: 125 ALEAAKQSGRVVVPEVLPPIPLKAVPQ--------VAQGLVAHVGATARVREVLDPEKPL 176

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A+ +GPEGG+  EE   L +  F TP+SLG RILR++T
Sbjct: 177 ALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAET 213


>gi|226307226|ref|YP_002767186.1| hypothetical protein RER_37390 [Rhodococcus erythropolis PR4]
 gi|226186343|dbj|BAH34447.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 253

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 9/243 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+D    +       G +  + A V R+  G+ ++L +G+     ++++ VGK  +   
Sbjct: 6   FFLDPVPGVGEIAVLDGQEGRHAATVRRIGVGERLVLADGRGRVADAEVTSVGKDRLELL 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V      +  +  V  I +  K  R +  ++ + E G+ A+ P  +              
Sbjct: 66  VSDVQVLEQPKPLVTLIQALPKAERSELAVELATEAGIDAVIPWQSLRCVAKWEGPKLAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKL 181
            + R R+  +SAA+Q     +P I        ++    D   +         S  +    
Sbjct: 126 GVARWRSAAVSAAKQSRRAFVPEISDLHKTAAVIALIRDAVARGAVVAVLHESATTPLAG 185

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +A    V +++GPEGG    E   L      TP+ LGP +LR+ TA   A+  +  + 
Sbjct: 186 LPLASADEVFLVVGPEGGLDDSEISALSEAG-ATPVLLGPTVLRTSTAGAVALGAIGVLT 244

Query: 242 GDW 244
             W
Sbjct: 245 DRW 247


>gi|269118812|ref|YP_003306989.1| hypothetical protein Sterm_0173 [Sebaldella termitidis ATCC 33386]
 gi|268612690|gb|ACZ07058.1| protein of unknown function DUF558 [Sebaldella termitidis ATCC
           33386]
          Length = 236

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 13  DFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV- 69
           +     ++  + +  +  +++ +V R K GD I L +GK  E+ + I+ +G K I  +V 
Sbjct: 8   NEDFISESNVEITEKNDINHVKNVYRYKTGDTIRLIDGK-FEYKAVIAEIGNKRILLRVT 66

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHYNMDRVR 128
           E    S + + ++      +K ++++  +QK  E+G+  I P+ T         + ++  
Sbjct: 67  EKHEDSYSLRVELDIALGILKNDKMNMALQKLTEIGINKIIPLKTDRVVVKLSDSKEKWN 126

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           T T  A +QC  + +P I    TL+ +   +    +++FA E       +  + +     
Sbjct: 127 TVTEEALKQCRGVKIPEIERILTLKDI--EFSAYDKVLFAYENSSENKPVFTILS-GEEK 183

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +  LIGPEGG+  EE + +     +  +SLG RI R++TAA+    ++
Sbjct: 184 RILYLIGPEGGFTEEETKYIREQGALE-ISLGKRIYRAETAAIVMGGIL 231


>gi|258546222|ref|ZP_05706456.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC
           15826]
 gi|258518647|gb|EEV87506.1| 16S rRNA methyltransferase RsmE [Cardiobacterium hominis ATCC
           15826]
          Length = 227

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 19/222 (8%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RLF   PL +          + +++ VLR++ G +++LFNG   ++ +++    +   + 
Sbjct: 16  RLFSSQPLRVGEVVALDASAHRHVSAVLRLRVGASLVLFNGDGFDYAAELVACDRRASQV 75

Query: 68  KVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
           ++  +         ++    + +K   +D ++QK+VE+G   I P+ T  +      +  
Sbjct: 76  RILAREAVGNESPLNLVLFAALLKGEAMDRVVQKAVELGAKRIVPLRTARSEALPADERL 135

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV-FADETCGSENSLE 179
              +   +   +++A QC   TLP +        +L++      I    D    S  + E
Sbjct: 136 SRKLAHWQGIVVASAMQCGRATLPQVEAVRDFADILEDAPGLRWIFSPHDAPAASGQAAE 195

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
                     V++LIGPEGG+  +E     +  ++ P SLGP
Sbjct: 196 A---------VSVLIGPEGGFAPDEVAAAVNAGWL-PQSLGP 227


>gi|46198606|ref|YP_004273.1| hypothetical protein TTC0298 [Thermus thermophilus HB27]
 gi|46196229|gb|AAS80646.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 228

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
                  G     +  +L  VLR + GD   +F+G+  E L+++  +G  +R++V  + R
Sbjct: 6   AFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEERR 64

Query: 75  SQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTY 130
            + +   +V    + +K ++L  +++ + E+G   I+P++TR++   +     + R+R  
Sbjct: 65  PEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAV 124

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            + AA+Q   + +P + PP  L+ + +        V          +      +     +
Sbjct: 125 ALEAAKQSGRVRVPEVLPPIPLKAVPQ--------VAQGLVAHVGATARVREVLDPEKPL 176

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A+ +GPEGG+  EE   L +  F TP+SLG RILR++T
Sbjct: 177 ALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAET 213


>gi|55980626|ref|YP_143923.1| 16S ribosomal RNA methyltransferase RsmE [Thermus thermophilus HB8]
 gi|55772039|dbj|BAD70480.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 228

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
                  G     +  +L  VLR + GD   +F+G+  E L+++  +G  +R++V  + R
Sbjct: 6   AFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEERR 64

Query: 75  SQTKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTY 130
            + +   +V    + +K ++L  +++ + E+G   I+P++TR++   +     + R+R  
Sbjct: 65  PEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAV 124

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            + AA+Q   + +P + PP  L+ + +        V          +      +     +
Sbjct: 125 ALEAAKQSGRVVVPEVLPPIPLKAVPQ--------VAQGLVAHVGATARVREVLDPEKPL 176

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           A+ +GPEGG+  EE   L +  F TP+SLG RILR++T
Sbjct: 177 ALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAET 213


>gi|159039365|ref|YP_001538618.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora arenicola
           CNS-205]
 gi|157918200|gb|ABV99627.1| protein of unknown function DUF558 [Salinispora arenicola CNS-205]
          Length = 244

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FK 68
           LF+   L         G + H+ A V R++ G+ +LL +G+ G   + ++ VGK +   +
Sbjct: 5   LFLVESLPTADTAILEGAEGHHAATVQRLRVGEELLLADGRGGTAAAVVTAVGKGVLDVR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
           +  +  +      +  +    K  R +  +Q   E+G+  I P                 
Sbjct: 65  ITSRGYTDAPAHRLVVVQGLAKGERGELAVQAMTEVGVDEIVPWTAARSVTQWRGDRGVR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIY--PPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
             ++       A +Q     LP +   P      +              E         +
Sbjct: 125 AREKWVATVREATKQARRAWLPVVAGTPDEATSQVAGRIAGAAAAYVLHEQAEERLVTAE 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L        + +++GPEGG    E     +     P+ LGP +LR+ TA VAA++++ A 
Sbjct: 185 L---PDGGEIVLVVGPEGGVAPAELTAFVAAG-AQPVRLGPSVLRTSTAGVAALSVLAAR 240

Query: 241 CGDW 244
            G W
Sbjct: 241 LGRW 244


>gi|124025432|ref|YP_001014548.1| hypothetical protein NATL1_07251 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960500|gb|ABM75283.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. NATL1A]
          Length = 254

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 4   HSHLKRLFVD-----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
            +  +RLF+        +    + K + ++ HYL  V+RM+  D + + +GK   W +KI
Sbjct: 1   MAEKRRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKI 60

Query: 59  SYVGKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
               K+I+    +    Q    ++  +       K    +  +Q S E+G+  I+P+I++
Sbjct: 61  VE-KKAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKG-FENFLQMSCEIGVDIIQPLISK 118

Query: 116 YTQNTH---YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            +         + R +     A EQ + L  P +    T    + +     Q+ FA    
Sbjct: 119 RSVVKECSNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--AT 176

Query: 173 GSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             E+  + +  +   P+    V ++IGPEGG++ EE+E   +  FV  +S+G  ILR+ T
Sbjct: 177 RIEDLPDCVTWVKETPHEVNQVWVVIGPEGGWNKEEEELAFNAGFV-GVSMGETILRTST 235

Query: 229 AAVAAMALV 237
           AAV+A+ ++
Sbjct: 236 AAVSALQVM 244


>gi|77919149|ref|YP_356964.1| hypothetical protein Pcar_1549 [Pelobacter carbinolicus DSM 2380]
 gi|77545232|gb|ABA88794.1| conserved hypothetical protein TIGR00046 [Pelobacter carbinolicus
           DSM 2380]
          Length = 259

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 17/240 (7%)

Query: 12  VDFPLCIKTQGKASGDQYH---YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           +D P  ++ +     D      Y +    ++ G  + + + +   + +++    K + F+
Sbjct: 25  LDCPAVVEKEMALPPDAVRALSYWS----IRPGAIVTVVDSQGICFRARLVDSNKVVPFQ 80

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
               +   +K   +    +  +  R + ++QKSVE+G+  I P +  ++           
Sbjct: 81  PLVSTCVPSKS--LTLYQALPEKERFELILQKSVELGVQRIVPFVCSHSTTLAERDAGQR 138

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
              R     + AA+QC    +P + P  + + +L+        +   E    +  L    
Sbjct: 139 KSHRWPEVVLRAAKQCRRGDIPELGPVMSFDQVLEEVSMWDLNLMLYEGDA-QARLHDAF 197

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               I + +I+IGPEGG+   E +       +T +SLGPRILR++TAA+A  ALVQ + G
Sbjct: 198 TSKDISSASIIIGPEGGFARHEAQQASDAGILT-VSLGPRILRTETAAIAGAALVQFMLG 256


>gi|29832115|ref|NP_826749.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces avermitilis
           MA-4680]
 gi|29609233|dbj|BAC73284.1| putative protein involving differentiation [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score =  180 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 9/234 (3%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQ 76
                  G +  +   V R++ G++++L +G        +  +     +  +++  +   
Sbjct: 16  GGHYVLDGAEGRHAVSVKRLRPGEDVVLTDGAGRWADCVVLGTEGKDRLIVQMDSVTEEP 75

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
            ++  +  + +  K +R +  ++   E G+ AI P                  + + R+ 
Sbjct: 76  PEEPRITVVQALPKGDRGELAVETMTETGVDAIVPWAAARCITQWKGDRGQKALAKWRST 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
              A +Q   +  P +    T + +              E             +    ++
Sbjct: 136 AREAGKQSRRVRFPEVAGAMTSKQVAALLATADLAAVLHEDTEHGTEPFATAQLPTSGSI 195

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +++GPEGG   EE E    +       LG  +LR+ TA   A AL+ A  G W
Sbjct: 196 VLVVGPEGGISPEEIELFTGVG-AKTFHLGRTVLRTSTAGTVATALLLARTGRW 248


>gi|312129649|ref|YP_003996989.1| hypothetical protein Lbys_0890 [Leadbetterella byssophila DSM
           17132]
 gi|311906195|gb|ADQ16636.1| protein of unknown function DUF558 [Leadbetterella byssophila DSM
           17132]
          Length = 234

 Score =  180 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 10/234 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
           LF    L           +  +   VLR K GD I + +GK G +   I     KS + +
Sbjct: 8   LFYGQDLS--EVLALDPTESLHAVKVLRKKAGDIIQVTDGKGGWFTCSIVDAHPKSCKLQ 65

Query: 69  VEYQSRSQTKQSDVQYI-FSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
           +   +    K     Y+  SP K  +R++Y ++KS+E+G+  I PV T +T   + N +R
Sbjct: 66  ILESTFEYEKPQREIYVAISPTKNGDRIEYFLEKSIEIGISGIIPVKTTHTYPKNINAER 125

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            +   ISA +Q     LP IYP  +++  L           A  + G+E+ +    +   
Sbjct: 126 WKKIAISAMKQSLKAYLPEIYPYLSVKDFLTLSKPFPTKFLAHLSEGAEDIIRVPLS--- 182

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              V I IGPEG +  EE     S  F   ++LG   LR++TA V A++++ A 
Sbjct: 183 -DKVLIWIGPEGDFTEEEINLATSSDF-QNVTLGKSRLRTETAGVFAVSILNAR 234


>gi|94984945|ref|YP_604309.1| hypothetical protein Dgeo_0838 [Deinococcus geothermalis DSM 11300]
 gi|94555226|gb|ABF45140.1| protein of unknown function DUF558 [Deinococcus geothermalis DSM
           11300]
          Length = 230

 Score =  180 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 17/216 (7%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRSQTKQSDVQYI 85
           +  +L HVLR++EGD + +F+G+  E  + ++     +++    E  S +      V   
Sbjct: 21  ETRHL-HVLRLREGDEVRVFDGQGTEAAATLARLEEARAVLTLGERLSGAAETPQPVTLA 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQCDILT 142
            + +K ++L  +++ + E+G+  ++ ++TR+          + R+R     A++Q     
Sbjct: 80  VALLKGDKLADVVRAATELGVARVQLLVTRHADVREIGEQKLQRLRRVAGEASKQSRRAV 139

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-IAHIPNVAILIGPEGGYH 201
            P +  P  L  L   W+    +           S ++L   ++    V +L GPEGG  
Sbjct: 140 TPEVLAPVPLAEL--TWEGQLFV-------AQPGSAQRLTDHLSWDAPVTVLTGPEGGLS 190

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             E   L S   V  ++LGPRILR++TA VA +  +
Sbjct: 191 DAEIRALTSRGAV-AVTLGPRILRAETAPVALLGAL 225


>gi|148272747|ref|YP_001222308.1| 16S ribosomal RNA methyltransferase RsmE [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830677|emb|CAN01617.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 252

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ 72
             L +      +G +  +   V R++ G+ IL+ +G+       ++    + +  +V+  
Sbjct: 13  SDLAVGRLLVLAGQEARHAVTVSRVRSGEGILVGDGRGTIASGTVTSAEPQRLELRVDAV 72

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
                    V  + +  K +R +  +Q + E+G+ A+ P   + +      Q      DR
Sbjct: 73  EAHPEPTPRVVLVQALAKGDRDELAVQAATELGVDAVIPWQAQRSVSRWEGQKVAKGRDR 132

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--- 183
            R     A +Q     +P +    T + L++       +V         + L+   A   
Sbjct: 133 WRAIVREAVKQSIRPRVPEVEALATTKDLVRMAATARVLVLDPTAVARLSRLDLATADGD 192

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
                +V +++GPEGG    E E+L +   + P++LGP ILR+ TA 
Sbjct: 193 AGPATDVLLVVGPEGGIAPAEVESLRAAGAI-PVALGPGILRTSTAG 238


>gi|317125267|ref|YP_004099379.1| hypothetical protein Intca_2142 [Intrasporangium calvum DSM 43043]
 gi|315589355|gb|ADU48652.1| protein of unknown function DUF558 [Intrasporangium calvum DSM
           43043]
          Length = 247

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76
             +     GD+  + A V+R++ G+   + +G     L++   V + S+R +V       
Sbjct: 18  PGSVIVLDGDEGRHAATVVRLRPGERYYVADGVGRRALAEAETVDRTSVRGRVLEVVDEA 77

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
              +    + +  K +R +  I+ + E+G+  + P     +      +    ++ +  T 
Sbjct: 78  EPATRFVLVQALAKGDRDEQAIEAATELGVDEVVPWAAERSIVVWRGERAAKSLAKWMTV 137

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPN 189
              AA+Q     +P    P  L  L+         +V  +E      ++    A+A   +
Sbjct: 138 VTRAAKQSRRARIPLTSSPVDLAALIDRVRGAALTLVLHEEATEPLAAV----AVAESGD 193

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V +++GPEGG    E E L +     P+ LGP  LRS TA  AA+A++ A
Sbjct: 194 VLVVVGPEGGISGRELEALVAAG-ARPVRLGPTTLRSSTAGPAALAVLNA 242


>gi|115374350|ref|ZP_01461634.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368660|gb|EAU67611.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 216

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 7/199 (3%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95
           LR+ EG ++ +F+G    + ++++ V           +RS   +  +  +    K ++L+
Sbjct: 2   LRLSEGASLEVFDGTGRAFEARVAAVDAREARLTLGAARSTPPRRALSVLQGLPKGDKLE 61

Query: 96  YMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPP 149
           +++QK  E+G  A  PV T  +      +       R       AA QC    +P ++PP
Sbjct: 62  WVLQKGTELGAAAFYPVDTARSVVKLEPKRAGERTLRWEKIVEEAARQCRRNDVPQVHPP 121

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             L    +      Q++  DE   +    E   A A    VA+++GPEGG   EE   L 
Sbjct: 122 AALLDRARALPPGTQLLVLDEEETAVPLGEAFRACAPGAPVALVVGPEGGLTREEVAALR 181

Query: 210 SLPFVTPLSLGPRILRSDT 228
           +L     ++LG  ILR++T
Sbjct: 182 ALG-ARGVTLGALILRTET 199


>gi|240047429|ref|YP_002960817.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma conjunctivae
           HRC/581]
 gi|239985001|emb|CAT04994.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           conjunctivae]
          Length = 226

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 17/236 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+                 +++ V+R +E    +    +   +L+K  +  +++ 
Sbjct: 1   MFRFFVNKK--EDNYFILDKKIVKHIS-VVR-QENKKFICVF-QKEFYLTKFEFPNRALI 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----H 121
            K    +   T+   +    + +KT   ++ IQK+ E+G+  I P  ++  +        
Sbjct: 56  LKKLDYNHENTEN--IVLAIAILKTKAFEFAIQKATELGVNTIIPFYSQNVEQKLGNDID 113

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +     AA+Q     +P I  P  ++ L++N+ H      A E   +   +  L
Sbjct: 114 KKLVRWQEIITHAAQQSFRNVIPVIEKPIKIKTLIENYQHMKNKFIAHEKENNNLMINSL 173

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  N   L+GPEGG+  EE E   +  F   +SLG RILR++TAA+  ++ +
Sbjct: 174 FE----NNTIFLVGPEGGFTEEEVEIAENFGF-QAISLGKRILRAETAAIFLLSRI 224


>gi|71894105|ref|YP_278213.1| hypothetical protein MS53_0081 [Mycoplasma synoviae 53]
 gi|71850893|gb|AAZ43502.1| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 225

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 19/235 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F    L      + S +   +L  VLR   G    L N ++  +  K+     ++ 
Sbjct: 1   MHRFFCYKKLDSN-YFELSDELLKHL-KVLR--IGSEEFLVNYQNEFYKCKLE---NNLA 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             +  Q  +      +      IK  R +++I+K+ E+G+  I P  +++TQ        
Sbjct: 54  KIISKQEINNELDYKIYLAIGLIKFERFEWLIEKATELGVFEIVPFYSQFTQKHKLLNQF 113

Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +R       AAEQ     +P +  P + E LL N+  N ++V  + +      L  
Sbjct: 114 QNKKNRFEKIIKFAAEQSFRNIIPNLKDPISFEDLL-NFYVNQKLVAHEISDNQNFDLNL 172

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L       ++ + IG EGG+ S+E        F   + LG  ILRS+TAA++ ++
Sbjct: 173 LTK----NDLLLTIGSEGGFSSDEIAKFKEANF-KVIHLGKTILRSETAAISLIS 222


>gi|87125782|ref|ZP_01081625.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917]
 gi|86166591|gb|EAQ67855.1| hypothetical protein RS9917_00160 [Synechococcus sp. RS9917]
          Length = 248

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 10/242 (4%)

Query: 4   HSHLKRLFV-----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
            + L+RL +     +  L    +   +  + HYL  VLR++ GD + + +G+ G W + +
Sbjct: 1   MAELRRLLIQRSRLEPCLNSDRRLALNEREGHYLRRVLRLRPGDAVAVVDGEGGLWTAGL 60

Query: 59  SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYT 117
               +     +     +      +      ++   +D +++ + E+G+  I+P+ +   T
Sbjct: 61  CSPAELALDPMAASDPAPAPSPLLGLAVVGVRRG-MDELMRMACELGVDRIQPLRSNWRT 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                   R +     A EQC+ L  P + P   ++        +     A        S
Sbjct: 120 VQAEERPQRWQLILDEAVEQCERLWQPSLLPCRHVDDWWGELSSDAVKALATTRRDGLPS 179

Query: 178 LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L++           V + IGPE G+ ++E+    +  + TP+S GP ILR+ TAAV+A+A
Sbjct: 180 LQQWLNQQPDQAGMVWVAIGPEAGWTADEERAAEAKGW-TPVSCGPSILRTSTAAVSAVA 238

Query: 236 LV 237
            +
Sbjct: 239 QM 240


>gi|72381940|ref|YP_291295.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. NATL2A]
 gi|72001790|gb|AAZ57592.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str.
           NATL2A]
          Length = 254

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 21/253 (8%)

Query: 4   HSHLKRLFVD-----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
            +  +RLF+        +    + K + ++ HYL  V+RM+  D + + +GK   W +KI
Sbjct: 1   MAEKRRLFIKLNRLRDEIDSNGELKLTSNESHYLFRVMRMRSEDLLEVIDGKGRLWNAKI 60

Query: 59  SYVGKSIRFKVEYQSRSQ---TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
               K+I+    +    Q    ++  +       K    +  +Q S E+G+  I+P+I++
Sbjct: 61  VEQ-KAIKLTNGFDKPLQFVSRERPLIGIAIVIPKKG-FENFLQMSCEIGVDIIQPLISK 118

Query: 116 YTQNTHYNMD---RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
            +     N +   R +     A EQ + L  P +    T    + +     Q+ FA    
Sbjct: 119 RSVVKECNNEKIIRYKKIIYEAVEQSERLWSPELMQVLTFPNWINDMSSEAQVGFA--AT 176

Query: 173 GSENSLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             E+  + +  +   P+    V ++IGPEGG++ +E+E   +  FV  +S+G  ILR+ T
Sbjct: 177 RIEDLPDCVTWVKETPHEVNQVWVVIGPEGGWNKDEEELAFNAGFV-GVSMGETILRTST 235

Query: 229 AAVAAMALVQAIC 241
           AAV+A + V    
Sbjct: 236 AAVSA-SQVMTSW 247


>gi|297623572|ref|YP_003705006.1| hypothetical protein Trad_1341 [Truepera radiovictrix DSM 17093]
 gi|297164752|gb|ADI14463.1| protein of unknown function DUF558 [Truepera radiovictrix DSM
           17093]
          Length = 237

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 20/244 (8%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M++H    R+FV   L    +   +G +  +LA VLR++ G  +  F+G   E    +  
Sbjct: 1   MRVH----RVFVPH-LAAGERV-LTGREAQHLAQVLRVRPGARVRAFDGAGLEADGTVRE 54

Query: 61  VGKSIRFKVEY---QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
           V   +R  +E     +R       V    + +K ++L  +++++ E+G    RP ++R  
Sbjct: 55  VT-GLRVTLELGAPYAREVEAALRVTLAVALLKGDKLAEVVRRATELGAVGFRPFVSRRC 113

Query: 118 QNTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
                    + R+R     AA+Q     +P +     L  L         +V       +
Sbjct: 114 DVRELSANKLARLRRVAQEAAKQSGRSVVPPVAEAAPLAHLSLPAPT---LVAHPSAPRT 170

Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
               E L A+   P  + +L GPEGG   +E   L       P+ LG RILR++TA VA 
Sbjct: 171 LG--ETLAALTPPPTALTVLTGPEGGLTEDELAALTERG-AHPIRLGARILRAETAPVAL 227

Query: 234 MALV 237
            A +
Sbjct: 228 TAAL 231


>gi|226356335|ref|YP_002786075.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus deserti
           VCD115]
 gi|226318325|gb|ACO46321.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 238

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 15/217 (6%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYI 85
           +  +L  VLR+  G  +L+F+G+  +  + +  +   ++I    E    +      +   
Sbjct: 29  EARHLY-VLRLSPGAEVLVFDGQGAQAQATVVELDAARAILHLGESIGAAAETPQPLTLA 87

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTISAAEQCDILT 142
            + +K ++L  +++ + E+G+  ++ ++TR           + R+      A++Q     
Sbjct: 88  VALLKGDKLADVVRAATELGVARVQLLVTRRADAREIGAQKLSRLNRIAEEASKQSRRAV 147

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
            P +  P TL      W+    +          +SL     +     V +L GPEGG  +
Sbjct: 148 TPPVLNPVTLADF--QWEGQLFV------AQPGSSLRLTQHLDWSAPVTVLTGPEGGLTT 199

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           EE   L +   ++ ++LGPRILR++TA VA +  + A
Sbjct: 200 EEVNQLTAKGALS-VTLGPRILRAETAPVALLGAIAA 235


>gi|296140458|ref|YP_003647701.1| hypothetical protein Tpau_2764 [Tsukamurella paurometabola DSM
           20162]
 gi|296028592|gb|ADG79362.1| protein of unknown function DUF558 [Tsukamurella paurometabola DSM
           20162]
          Length = 252

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 93/240 (38%), Gaps = 18/240 (7%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75
               +    GD+  + A V R++ G+ ++L +G  G        VGKS +  +       
Sbjct: 13  APGEEYLLDGDEGRHAAAVRRIRVGEELVLSDGAGGFARCAAEAVGKSDVTVRCAQTWTV 72

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--------NTHYNMDRV 127
                 V  + +  K++R +  ++ + E G   I P                    + R 
Sbjct: 73  PAPSPRVIVVQALPKSDRAELAVELATEAGADEIVPWQAARCVARWDGAKSKAEKGVARW 132

Query: 128 RTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           R    SAA+Q     +P ++   T   L  LL + D N  +V  + +      ++     
Sbjct: 133 RAVARSAAKQARRAYVPRVHDLVTGRELIPLLTSMDANV-VVLHEGSAVPLGEVDFSVTT 191

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             +  V    GPEGG   EE + L ++    P  LGP +LR+ TAA  A+  +  +   W
Sbjct: 192 TVVIVV----GPEGGISPEELDALVAMG-AQPALLGPTVLRTSTAAAVALGAIGVLTDRW 246


>gi|294812559|ref|ZP_06771202.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440988|ref|ZP_08215722.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325158|gb|EFG06801.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 247

 Score =  178 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 12/236 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSR 74
              T     G +  +   V R+  G+ I+L +G+       +  +    ++  +V     
Sbjct: 15  APGTPFTLDGPEGRHAVSVRRLTSGEEIVLTDGQGRGAAGAVLRTEGKDTLVVEVRELRD 74

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHYNMDRVR 128
               +  +  + +  K +R +  ++   E G+  I P            +    ++ + R
Sbjct: 75  EPAPRPRITVVQALPKGDRGELAVETMTETGVDTIVPWSAARCITQWRGERGAKSLAKWR 134

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                A +Q   L  P +    T + +              E      +  +L A     
Sbjct: 135 ATAREAGKQSRRLRFPEVADAATTKQVAALLAEADFAAVLHEEGAEALATAELPA---EG 191

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++ +++GPEGG   EE +   +     P  LG  +LR+ TA  A +AL+    G W
Sbjct: 192 SIVLVVGPEGGVSPEELDAFAAAG-ARPFRLGHSVLRTSTAGTAGVALLLGRTGRW 246


>gi|322434914|ref|YP_004217126.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9]
 gi|321162641|gb|ADW68346.1| protein of unknown function DUF558 [Acidobacterium sp. MP5ACTX9]
          Length = 255

 Score =  178 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 19/223 (8%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           T    +GDQ  +LA VLR + G    +         ++I+ V       + ++       
Sbjct: 18  THAALTGDQAAHLARVLRAQPGQIFDVV-AAGFLHRAEITAVSPERVDFLLHEELESDSA 76

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISA 134
             +    +  K + L++ I+K+ E+G   I P++ R T+          ++R R     A
Sbjct: 77  LPLHLYLAIFKFDHLEWAIEKATELGAAKITPILARRTEKHLAQAAAKRVERWRRIAHEA 136

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS----LEKLHA------I 184
           ++Q    + P I  PT L+  L+      +I+ ++       S      +L +       
Sbjct: 137 SQQSRRTSTPEISDPTPLKQALERETAPHRILLSETEQSLTLSTALGAPRLDSETWDGIP 196

Query: 185 AHIPNV--AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           ++   +  A+ IGPEGG+  EE        + T ++LGPRILR
Sbjct: 197 SNSQEITHALAIGPEGGWTPEEMSLFTHHQW-THVTLGPRILR 238


>gi|254796435|ref|YP_003081271.1| hypothetical protein NRI_0035 [Neorickettsia risticii str.
           Illinois]
 gi|254589672|gb|ACT69034.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 232

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 123/236 (52%), Gaps = 15/236 (6%)

Query: 6   HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L RLF++   +   T+      + HYL  V+R+++   +++FNG+ GEW++K+      
Sbjct: 2   RLTRLFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEAQVIVFNGRSGEWIAKVDR--NF 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           +   ++ + ++ +   D+   F+  K   L   ++++ E+ +  +RP+ +   +N + ++
Sbjct: 60  LVPDIQIRPQTASYPYDIHLCFAVPKHKALKETVRQATELDVTTLRPIYSSRAENKNKDL 119

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +++  + I AA+QC  +++P + PP  L  +    ++   +   DET     S   +  I
Sbjct: 120 EKLELWAIEAAQQCRRMSIPILLPPIALREVETYHEN---VFICDETL----SDSVICDI 172

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             + +  I+IGPEGG+  EE   +        +SLG  ILR  TAA +A+A V+++
Sbjct: 173 PILSSYTIVIGPEGGFSHEELSLI-----DKRISLGRTILRCSTAATSAIAQVRSV 223


>gi|254672585|emb|CBA06262.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 153

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D+ +QKSVE+G+ AI+PVI+         +     + R +   ISA EQ    T+P + 
Sbjct: 1   MDFTLQKSVELGVTAIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVL 60

Query: 148 PPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEK 205
           P       L      + +++       S N   KL  I H    +  ++GPEGG+  +E+
Sbjct: 61  PIIGYREALDKMPSESTKLIM------SINRARKLGDIRHPSGAIVFMVGPEGGWTEQEE 114

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +      F   ++LG RILR++TA +AA+A +Q + GD+
Sbjct: 115 QQAFEAGF-QAVTLGKRILRTETAPLAAIAAMQTLWGDF 152


>gi|206900758|ref|YP_002251046.1| hypothetical protein DICTH_1217 [Dictyoglomus thermophilum H-6-12]
 gi|206739861|gb|ACI18919.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 247

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQ 83
             +   +L +VLR++EG+ I + N     + + +  + K  I  ++  +   +    +V 
Sbjct: 20  DKEDIFHLVNVLRVREGEKINV-NYNLKIYETYVERIEKDKIVCRIIGELEDKESNVEVY 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
              S  K    + +++K  E+G+    P+ T+ +             +R       A +Q
Sbjct: 79  LCQSLPKRESWEIILEKCTEIGVVGFIPLQTQRSIVNLSKDGLVKKYERWNKIIREAVKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIG 195
           C    LP +Y   +LE  L    + +  IV A E  G+E  L+ +     I + + + IG
Sbjct: 139 CGRNRLPLLYQVKSLEECLSLAREKDFDIVVAWE--GAELGLKDIMNRREIKDKIFLFIG 196

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           PEG +  EE E +     +   ++GPRIL+ +TAA+ A AL+    G
Sbjct: 197 PEGSFADEEIELMKKYGGI-FFNMGPRILKVETAAIVASALLLYEKG 242


>gi|88855039|ref|ZP_01129704.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1]
 gi|88815567|gb|EAR25424.1| hypothetical protein A20C1_04136 [marine actinobacterium PHSC20C1]
          Length = 243

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 16/248 (6%)

Query: 7   LKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG- 62
           +  L++D  L    +      +  +  +   V R+K G+ + + NG        I+    
Sbjct: 1   MAHLYIDEELEDAKVGDTVSLTNAEARHAVTVSRLKVGETVAIGNGAGLVVSGPITTAEH 60

Query: 63  KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
             +  +V    R+      V    +  K +R +  +Q + E+G+  + P     +     
Sbjct: 61  TELTIEVANAERTARSTPAVFLAQALAKADRDELAVQVATELGIDGVIPWSAARSISRWQ 120

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                   DR       A++Q     LP +    T + L         +V       + +
Sbjct: 121 GPKVAKGRDRWAAIVREASKQSLRTWLPDVLDLVTTKQLAAFAATTRMLVLEPTATETLS 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            LE         ++ +++GPEGG    E E L +    + + LG  +LR+ TA  AA+A+
Sbjct: 181 ELEV-----DGRDIVLVVGPEGGVADHELELLTAAG-ASTVRLGNEVLRTSTAGPAALAV 234

Query: 237 VQAICGDW 244
           +    G W
Sbjct: 235 LNVKLGRW 242


>gi|262039461|ref|ZP_06012765.1| YqeU [Leptotrichia goodfellowii F0264]
 gi|261746528|gb|EEY34063.1| YqeU [Leptotrichia goodfellowii F0264]
          Length = 235

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 9/229 (3%)

Query: 13  DFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           D     + +   +     +++ +V R+ +GD + + +G+  E+L++I+ + K        
Sbjct: 7   DKENITEKEITITDKSDCNHVQNVFRLGKGDGLRVIDGE-FEYLTEITNIAKKEIKLKII 65

Query: 72  QSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVR 128
           +  +       ++      +K  +++  I+K  E+G+  I P+ T       +   ++  
Sbjct: 66  KKNTDNYSLNINIDAAIGILKNEKMNMTIKKLTEIGVSKIIPLQTERVVVKINEKKEKWD 125

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                A +QC  +    I P T L+ +  N++   +IV+A E   +   L  +    +  
Sbjct: 126 ITVREALKQCKGVKFTEIVPVTKLQSI--NYELYDKIVYAYENSDNTEPLVNI-VNKNDK 182

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           N+  ++GPEGG   EE   L      T +SLG RILR++TAA+    ++
Sbjct: 183 NILYIVGPEGGITEEEVNFLKEKG-ATEISLGKRILRAETAAIVIGGIL 230


>gi|269218584|ref|ZP_06162438.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211695|gb|EEZ78035.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 287

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 13/238 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
             P     +   +G + H+ A V R   G+ I + +G+ G     +  V K  +  +V  
Sbjct: 52  PLPCRPGDRFVLAGPEGHHAATVKRASPGEEIDVVDGRGGRARCAVVGVSKGEVELEVLG 111

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDR 126
             R       +  + +  K +R D  ++ + E G+  I P  +                R
Sbjct: 112 FEREPDPSPRITLLQALAKGSRDDQAVETATEYGVWRIVPWASARAVANWKGKEEKARRR 171

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFL--LKNWDHNCQIVFADETCGSENSLEKLHAI 184
             +  ++A++Q     +P +    T      L + +    +V  +E             +
Sbjct: 172 WESIVLAASKQSRRSWVPEVLDVCTTPQALRLASAEGADLLVCHEEADMPIARA----GL 227

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               N+ I++GPEGG   EE E+   +   T + L P +LRS +A   A+A +  + G
Sbjct: 228 QGSKNLWIVVGPEGGLTQEEIESFERIGGRT-VLLSPNVLRSSSAGPFAVAALSGMRG 284


>gi|320335223|ref|YP_004171934.1| ribosomal RNA small subunit methyltransferase E [Deinococcus
           maricopensis DSM 21211]
 gi|319756512|gb|ADV68269.1| Ribosomal RNA small subunit methyltransferase E [Deinococcus
           maricopensis DSM 21211]
          Length = 228

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 20/237 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63
           + R+ VD    +  +      ++ +L  VLR++ GD I +F+G+  E  + +S +   G 
Sbjct: 1   MHRVKVD---ALTPEMSVPAREWRHL-RVLRLRAGDTIRVFDGRGAEAEATVSALHEGGA 56

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
           ++      +  ++T Q  V    + +K ++L  + + + E+G+  I+ + +RY       
Sbjct: 57  TLTLGASVEGAAETPQP-VTLAIALLKGDKLADVTRAATELGVARIQLLTSRYADVPDIG 115

Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R+R   + A++Q      P +  P  +  L  +       +    T         
Sbjct: 116 PAKLERLRRIALEASKQSRRAVTPDVLAPIPVTQLRADGPAF---IAHPGTHARLTDHLT 172

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             A      V ++ GPEGG+   E   L    F TP++LGPRILR++TA +A +  +
Sbjct: 173 WDAP-----VTVVSGPEGGWTDAEVTHLERAGF-TPVTLGPRILRAETAPLALLGAI 223


>gi|197120677|ref|YP_002132628.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K]
 gi|196170526|gb|ACG71499.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K]
          Length = 240

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L+R+ +      + +   + +  HYL  VLR+  G  + LF+G+ G W + +    +++ 
Sbjct: 3   LRRVHLPPERIGEGRAALTDEARHYLRDVLRLAPGAAVELFDGRGGAWEATVLDGFEALA 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +        V  + +  K  ++D ++QK+ E+G   I P     +      +  
Sbjct: 63  LGARRAAPGGGAP--VWLLVALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKG 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R R     AA QC    +P +  P  L   L                 S +    
Sbjct: 121 EARAARWRRIAEEAARQCGRADVPEVRAPAPLGAALAEVPAGFGAFVFHPGGASLSEA-- 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             A +     A ++GPEGG    E+E           SLGPR+LR++TAA+ A+AL+QA 
Sbjct: 179 --APSPAGGYAAVVGPEGGLTDAEREACARAG-ARDTSLGPRVLRAETAAIVAVALLQAR 235

Query: 241 CGD 243
            GD
Sbjct: 236 FGD 238


>gi|15806531|ref|NP_295243.1| 16S ribosomal RNA methyltransferase RsmE [Deinococcus radiodurans
           R1]
 gi|6459283|gb|AAF11086.1|AE001996_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 242

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-----KVEYQSRS 75
             +    +  +L HVLR++ G+ + +F+G+ GE ++ +S +                SR 
Sbjct: 23  TMRLGPQETRHL-HVLRLRPGERVQVFDGRGGEAVAVLSELDAGHALLHLDPAAAAHSRG 81

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRVRTYTI 132
                 V    + +K ++L  +++ + E+G   I+ +IT + +        + R+R    
Sbjct: 82  AEYPQPVTLAIALLKGDKLADVVRAATELGAARIQLLITAHAEARDIGAQKLVRLRRIAG 141

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            AA Q +   +P +  P  L  L   W+            GS+  L  L        + +
Sbjct: 142 EAARQSERRIVPDVLEPVPLTKL--TWEGQLLTAHP----GSQERLTDLLTWDAP--LTV 193

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           L GPEGG  + E E L        ++LGPRILR++TA +A +  + A
Sbjct: 194 LSGPEGGLSTAEVEHLTRQG-ARLITLGPRILRAETAPLALLGAMAA 239


>gi|187251700|ref|YP_001876182.1| hypothetical protein Emin_1295 [Elusimicrobium minutum Pei191]
 gi|186971860|gb|ACC98845.1| Conserved hypothetical protein [Elusimicrobium minutum Pei191]
          Length = 230

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 17/229 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + +   +       +   +GD+  +L  V+R  EGDNI +F+G+  ++ + I  V K I 
Sbjct: 1   MPQYIAE---ITGERFLITGDEAKHLFCVMRAAEGDNIKIFDGRGKKFNAVIKEVAKDIV 57

Query: 67  F-KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NT 120
              V  +   +    ++   F+P+  ++ + ++ K  ++G+ +  PVIT  T+       
Sbjct: 58  VGSVISEIALRPLPYNLTLCFAPVDKSKTEEILDKCTQLGVSSFLPVITERTEHDILKKW 117

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               +R     I+A +QC+   +P +  P   E  LK      + + A E    ENS+  
Sbjct: 118 ENKKERWEQIIIAAVKQCETAFVPRLLAPQKFEQALKIP---GKTIIAYE---KENSVSL 171

Query: 181 LHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             A+        I IGP GG+   E E       V  ++LG  I+R++T
Sbjct: 172 SSAVKGEEKAIKIFIGPAGGFSPREVEEAVLQGAVL-VTLGVNIMRAET 219


>gi|227495124|ref|ZP_03925440.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM
           15436]
 gi|226831576|gb|EEH63959.1| protein of hypothetical function DUF558 [Actinomyces coleocanis DSM
           15436]
          Length = 248

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 15/245 (6%)

Query: 10  LFVD--FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIR 66
            F D    L +      +G + H+   V+R+  G+ I L +G     +S+ IS   KS+ 
Sbjct: 6   YFHDDFTGLEVGKPFTFTGSEAHHAC-VMRVAPGEEIHLVDGHGLRVISEVISAADKSVT 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            +        + +     + +  K  R +  ++ + E+G+  +    ++ T      +  
Sbjct: 65  VRPREIKNETSIRPVTTLVQALAKGGRDEQAVEMATEVGIDKVIAWQSQRTIVKWEGKKQ 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
             N+++      +A +Q     +P +    + + LL        +V  +     E++LE+
Sbjct: 125 GKNLEKWSNLLKAATKQSRRSRIPTVDYAESTKSLLNKLTDAKLLVLHE---SGEHTLEQ 181

Query: 181 LHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +         +A+++GPEGG    E     +      + +G  ++RS TA   A+ALV  
Sbjct: 182 IPTEWFDTTEIALIVGPEGGITEAELAAFTAQG-AQIVRIGNTVMRSSTAGTVALALVNY 240

Query: 240 ICGDW 244
           + G +
Sbjct: 241 LSGRY 245


>gi|256828472|ref|YP_003157200.1| hypothetical protein Dbac_0661 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577648|gb|ACU88784.1| protein of unknown function DUF558 [Desulfomicrobium baculatum DSM
           4028]
          Length = 244

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 7/236 (2%)

Query: 4   HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
            + L   ++   L  +      G+++H+L  VLR K G+++ LF+G+    +  I  + K
Sbjct: 1   MARLNSFYLAPALW-REPFSLEGEEFHHLTRVLRAKAGESVRLFDGRGRWGIFCIRDLSK 59

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120
                +   +  +      +       K  R  ++++K+VE+G   +       +Q    
Sbjct: 60  KSASLQRLSEQTAPAPACPLILAVGWSKGLRRGFLLEKAVELGAAEVWLWQAARSQGEVP 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               D       +AA+QC    LP I        ++         V   E   +      
Sbjct: 120 QEGKDGWERQLTAAAKQCGASRLPQIRTFAGPADVISAAVDLGSKVLCWEQEENGFVDPT 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           L A     ++A+L GPEGG   +E +      F  P+ LGP ILR +TAAV  ++L
Sbjct: 180 LLAHRRG-SIAVL-GPEGGLERKEADLFREHGFA-PVGLGPNILRFETAAVLVLSL 232


>gi|217967714|ref|YP_002353220.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724]
 gi|217336813|gb|ACK42606.1| protein of unknown function DUF558 [Dictyoglomus turgidum DSM 6724]
          Length = 246

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 12/226 (5%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQ 83
             +   ++ +VLR++EG+ I + N     + + +  +    +  K+  +  ++    +V 
Sbjct: 20  DKEDIFHMVNVLRIREGEKIDV-NYNSKIFRAYVEKIEEDRVICKIIEKIGNKEANVEVY 78

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQ 137
              S  K    + +++K  E+G+    P+ T+ +         +    R       A +Q
Sbjct: 79  LCQSLPKKESWEIILEKCTEIGVVGFIPLQTQRSIVNLSRDELNKKYQRWNKVIKEAVKQ 138

Query: 138 CDILTLPFIYPPTTLEFLLK-NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           C    LP +Y   TLE  L      N  I+ A E  G+E SL+ +        + + IGP
Sbjct: 139 CGRNKLPLLYKVQTLEESLNLAKKENADILIAWE--GAELSLKNIIRNNIRDKIFLFIGP 196

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           EG +  EE   +     +   ++GPRIL+ +TAA+ A AL+    G
Sbjct: 197 EGSFTDEEINLMKKYNGI-FFNMGPRILKVETAAIVASALLLYEKG 241


>gi|194477277|ref|YP_002049456.1| hypothetical protein PCC_0836 [Paulinella chromatophora]
 gi|171192284|gb|ACB43246.1| hypothetical protein PCC_0836 [Paulinella chromatophora]
          Length = 257

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 15/247 (6%)

Query: 6   HLKRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            L+RLF+    L    + K    + HYL  VLR + GD   + +G    W + +    ++
Sbjct: 3   ELRRLFISHHRLGYSNEFKLRASESHYLTKVLRYRIGDCFAVIDGVGRLWSAILMDRERA 62

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQ-NTHY 122
              +        T     Q   +     R  D ++Q + E+G+  I+P+I ++   N   
Sbjct: 63  QLEQKITIPLVSTMAPSPQLELAIALPRRGFDDLLQITSELGIDRIQPLIVKHCVTNKDI 122

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFADETCGSEN 176
           ++DR +     + EQC+ L  PF   P      ++  D +         +FA    G   
Sbjct: 123 SLDRCKAILQESTEQCERLWTPFCGDPCLFYNWIEQKDSDAAKNETRVKLFATTRRGGLI 182

Query: 177 SLEKL-----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           SL KL       I+   ++++ IGPEGG+   E++   +  +   +SLGPRIL++ TAA+
Sbjct: 183 SLVKLLNQNSSKISLSQSLSLAIGPEGGWTLNEEQRAEAAGW-QAVSLGPRILKTRTAAI 241

Query: 232 AAMALVQ 238
            A A++ 
Sbjct: 242 VAGAIMS 248


>gi|253583198|ref|ZP_04860396.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251833770|gb|EES62333.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 237

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 10/218 (4%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
                ++L +V R+K  + I   +G+  E+  K+  + K        Q         V+ 
Sbjct: 20  EKSDINHLKNVFRVKLDEKIRAVDGE-KEYFCKVVSIDKKEIILEIEQIFEDRYSHKVKI 78

Query: 85  --IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQCDIL 141
                 +K +++D  IQK  E+G+  I P+  +          D+       A +QC  +
Sbjct: 79  DAALGILKNDKMDLAIQKLTEIGVNKIIPLAVKRGVVKITEKKDKWDLIVREALKQCQAV 138

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL--HAIAHIPNVAILIGPEGG 199
               I     LE +   ++    I+   E C  E +L+ L  +       +  +IG EGG
Sbjct: 139 KATEIDEVKKLEEI--EFEEYDLIIVPYE-CEEEYTLKNLLRNEEKSPKKILYIIGSEGG 195

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +  EE E L        ++LG RILR++TA++    ++
Sbjct: 196 FDPEEIEFLKRKK-ANIVTLGRRILRAETASIVVGGIL 232


>gi|108800424|ref|YP_640621.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. MCS]
 gi|119869553|ref|YP_939505.1| hypothetical protein Mkms_3521 [Mycobacterium sp. KMS]
 gi|108770843|gb|ABG09565.1| protein of unknown function DUF558 [Mycobacterium sp. MCS]
 gi|119695642|gb|ABL92715.1| protein of unknown function DUF558 [Mycobacterium sp. KMS]
          Length = 248

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 18/248 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD    +       GD   +  +V R + G+++ L +G        +  VGK  +  +
Sbjct: 5   FYVDALPGLGELAVVDGDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTAR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121
           V  +         V  + +  K++R +  ++ + E G  A+                   
Sbjct: 65  VLERRTVTPPAPAVTVVQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAGKVD 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSEN 176
             + R R    SAA Q     +P +    T   L++       D    +V  +   G   
Sbjct: 125 KGLRRWRAVVRSAARQSRRAHIPPVDGVVTTAELVRRVTAEVADGATVLVLHESATGPLT 184

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++   A A    V +++GPEGG   EE + L +   V  + LGP +LR+ TAA   +  
Sbjct: 185 GVDLTQARA----VTLIVGPEGGIADEELDALTAAGAV-AVRLGPTVLRTSTAAAVGLGA 239

Query: 237 VQAICGDW 244
           +  +   W
Sbjct: 240 LGVLTPRW 247


>gi|302869298|ref|YP_003837935.1| hypothetical protein Micau_4850 [Micromonospora aurantiaca ATCC
           27029]
 gi|302572157|gb|ADL48359.1| protein of unknown function DUF558 [Micromonospora aurantiaca ATCC
           27029]
          Length = 244

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 13/241 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           LF+   L         G + H+ A V R++ G+ ++L +G+ G   + ++ VG+ ++  +
Sbjct: 5   LFLVEALPTGDTLTLDGPEGHHAATVQRLRAGEELVLADGRGGTAAAVVTAVGRGTLDLR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
           V  +  +      +  +    K +R +  +Q   E+G+  I P                 
Sbjct: 65  VTSRGYADAPVPRLVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGDRGGR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +       AA+Q     LP +   P  +   + +            E      +   
Sbjct: 125 ARQKWVATAREAAKQARRPWLPVVAGAPDESTASVARRIAGAAGAFVLHEGAHDRLTTVD 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A      + +++GPEGG    E          T + LGP +LR+ TA VAA+ ++   
Sbjct: 185 LPA---TGEIVLVVGPEGGIADHELAAFADAGART-VRLGPSVLRTSTAGVAALTVLATR 240

Query: 241 C 241
            
Sbjct: 241 L 241


>gi|15604043|ref|NP_220558.1| 16S ribosomal RNA methyltransferase RsmE [Rickettsia prowazekii
           str. Madrid E]
 gi|6226337|sp|Q9ZDZ5|RSME_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|3860734|emb|CAA14635.1| unknown [Rickettsia prowazekii]
          Length = 198

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 113/201 (56%), Gaps = 8/201 (3%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           MK +    R++++  L   ++ + + D  HY+  VLR+K  D++ +FNG DGE+L++I+ 
Sbjct: 1   MKYN----RIYINSNLAENSKLELARDYVHYVKTVLRLKIHDSLRIFNGSDGEFLAQITQ 56

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           +GK+ +   ++ Q +    +S +    + IK+++L   I  + ++G+  I P+ITR  Q 
Sbjct: 57  IGKNNLSVVLKEQLKKAYIESALTLAVAIIKSDKLMLTINMATQLGITKIIPLITRRCQF 116

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              N++R+    I A EQ + L  P I    TL+  LK   +N  I++A+E    ++S+ 
Sbjct: 117 RTVNIERLMKCVIEATEQSERLNPPIIEQAITLKDYLK--KNNNLILYANEHEKVKHSIL 174

Query: 180 KLHAIAHIPNVAILIGPEGGY 200
            + ++    ++AI+IGPE G 
Sbjct: 175 HISSLLS-KDIAIIIGPEEGL 194


>gi|300813571|ref|ZP_07093902.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300512319|gb|EFK39488.1| RNA methyltransferase, RsmE family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 230

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 34/239 (14%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKE--------GDNILLFNGKDGEWLSKI 58
           + R F           + + +  H+L +V+R+K+         D I+LFN KD       
Sbjct: 1   MYRFF--EDRNYDNINELNKENLHHLKNVIRIKDDEDFSVVFNDKIILFNLKD------- 51

Query: 59  SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
                 + +K E    S      +   F  +K ++ + +I+   E+G+    P+I     
Sbjct: 52  ----DRLIYKKEI-FDSNEPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCV 106

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
                     + R +    SAA Q     +P ++ P  ++ + KN+  +  + + DE   
Sbjct: 107 SNISDKVDKKIQRWQKIAKSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDE--- 163

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             N   K        N+AI++GPEGG    E E L        +SLG RILR++T++V 
Sbjct: 164 -RNLFFKDIKEKLSKNLAIIVGPEGGISKREIEVLKDA---HRISLGKRILRAETSSVV 218


>gi|282883131|ref|ZP_06291730.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus
           lacrimalis 315-B]
 gi|281296943|gb|EFA89440.1| ribosomal RNA small subunit methyltransferase E [Peptoniphilus
           lacrimalis 315-B]
          Length = 230

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 34/239 (14%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEG--------DNILLFNGKDGEWLSKI 58
           + R F           + + +  H+L +V+R+K          D I+LFN KD       
Sbjct: 1   MYRFF--EDRNYDNINELNKENLHHLKNVIRIKADEDFSVVFKDKIILFNLKD------- 51

Query: 59  SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
                 +    +    S      +   F  +K ++ + +I+   E+G+    P+I     
Sbjct: 52  -----DMLIYKKEIFDSNEPPIKLSLFFGILKGDKNEKVIEHGTEVGVYDFYPLIMDRCV 106

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
                     + R +    SAA Q     +P ++ P  ++ + KN+  +  + + DE   
Sbjct: 107 SNISDKVDKKIQRWQKIAKSAAGQSKRDIVPLVHRPIKVDEIAKNYSGDLILFYEDE--- 163

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
             N   K        N+AI++GPEGG    E E L        +SLG RILR++T++V 
Sbjct: 164 -RNLFFKDIKEKLSKNLAIIVGPEGGISKREIEVLKDA---HRISLGKRILRAETSSVV 218


>gi|145595966|ref|YP_001160263.1| 16S ribosomal RNA methyltransferase RsmE [Salinispora tropica
           CNB-440]
 gi|145305303|gb|ABP55885.1| protein of unknown function DUF558 [Salinispora tropica CNB-440]
          Length = 244

 Score =  175 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 13/244 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           LF+   L        +G + H+ A V R++ G+ +LL +G  G  ++ ++ VGK ++  +
Sbjct: 5   LFLVESLPTAETATLNGPEGHHAATVQRLRAGEELLLADGCGGTAVAVVTAVGKGALELR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
           +  +         +  +    K  R +  +Q   E+G+  I P                 
Sbjct: 65  ITSRDHVDAPAHRLVVVQGLAKGERGELAVQAMTEVGVDTIVPWTAGRSVTQWRGDRGVR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +       AA+Q     LP +   P      + +            E  G      +
Sbjct: 125 ARGKWVATAREAAKQARRAWLPVVAGAPAEDTSAVARRIAQAAAAFVLHEQAGERLVTAE 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L        + +++GPEGG    E          T + LG  +LR+ TA VAA++++ A 
Sbjct: 185 L---PDRGEIVLVVGPEGGVAPGELAAFAEAGART-VRLGSSVLRTSTAGVAALSVLAAR 240

Query: 241 CGDW 244
            G W
Sbjct: 241 LGRW 244


>gi|315504227|ref|YP_004083114.1| hypothetical protein ML5_3449 [Micromonospora sp. L5]
 gi|315410846|gb|ADU08963.1| protein of unknown function DUF558 [Micromonospora sp. L5]
          Length = 244

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 13/241 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           LF+   L         G + H+ A V R++ G+ ++L +G+ G   + ++ VG+ ++  +
Sbjct: 5   LFLVEALPTGDTLTLDGPEGHHAATVQRLRTGEELVLADGRGGTAAAVVTAVGRGTLDLR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
           V  +  +      +  +    K +R +  +Q   E+G+  I P                 
Sbjct: 65  VTSRGYADAPVPRLVVVQGIAKGDRGELAVQAMTEVGVDEIVPWAASRSVAQWRGDRGGR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +       AA+Q     LP +   P  +   + +            E      +   
Sbjct: 125 ARQKWVATAREAAKQARRPWLPVVAGAPDESTASVARRIAGAAGAFVLHEGAHDRLTTVD 184

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A      + +++GPEGG    E          T + LGP +LR+ TA VAA+ ++   
Sbjct: 185 LPA---TGEIVLVVGPEGGIADHELAAFADAGART-VRLGPSVLRTSTAGVAALTVLATR 240

Query: 241 C 241
            
Sbjct: 241 L 241


>gi|126436047|ref|YP_001071738.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium sp. JLS]
 gi|126235847|gb|ABN99247.1| protein of unknown function DUF558 [Mycobacterium sp. JLS]
          Length = 248

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 18/248 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD    +       GD   +  +V R + G+++ L +G        +  VGK  +  +
Sbjct: 5   FYVDALPGLGELAVVDGDAGFHATNVRRTRAGEHLDLGDGDGTVAHCVVEDVGKGRLTAR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121
           V  +         V  + +  K++R +  ++ + E G  A+                   
Sbjct: 65  VLERRTVTPPAPAVTVVQAIPKSDRAELAVESATEAGADAVLAWQAARCVARWDGAAKVD 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCGSEN 176
             + R R    SAA Q     +P +    T   L+     +  D    +V  +   G   
Sbjct: 125 KGLRRWRAVVRSAARQSRRAHIPPVDGVVTTAELVCRVTAEVADGATVLVLHESATGPLT 184

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            ++   A A    V +++GPEGG   EE + L +   V  + LGP +LR+ TAA   +  
Sbjct: 185 GVDLTQARA----VTLIVGPEGGIADEELDALTAAGAV-AVRLGPTVLRTSTAAAVGLGA 239

Query: 237 VQAICGDW 244
           +  +   W
Sbjct: 240 LGVLTPRW 247


>gi|269123850|ref|YP_003306427.1| hypothetical protein Smon_1088 [Streptobacillus moniliformis DSM
           12112]
 gi|268315176|gb|ACZ01550.1| protein of unknown function DUF558 [Streptobacillus moniliformis
           DSM 12112]
          Length = 233

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 102/215 (47%), Gaps = 9/215 (4%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT--KQSDVQYI 85
           + +++ +V R+KE D + + + +  E+   +  + K          +        ++   
Sbjct: 21  EINHIKNVFRLKENDEVRVIDFE-YEYKGIVKEINKKNILISISDKKEDNYSLSFNLDVA 79

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-TQNTHYNMDRVRTYTISAAEQCDILTLP 144
              +K  ++  +IQK  E+G+  I P+ T       +   ++       + +QC  +   
Sbjct: 80  IGLLKNEKMKLLIQKLTELGIRNIIPLKTERVVVKINEKKEKWDLVVRESMKQCRAIKKT 139

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +     ++ +   +++  +I++A E   S  +L+++       N+ ++IGPEGG+  +E
Sbjct: 140 NVEILNEIKRI--KYENYDKIIYAYENSESSLNLKEIIK-KEDSNILLIIGPEGGFTKDE 196

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVA-AMALVQ 238
            + L S+  +  +SLG RILR++TAA+  A +++ 
Sbjct: 197 VKYLKSIGAIE-ISLGKRILRAETAAIVLAGSIIN 230


>gi|119716137|ref|YP_923102.1| 16S ribosomal RNA methyltransferase RsmE [Nocardioides sp. JS614]
 gi|119536798|gb|ABL81415.1| protein of unknown function DUF558 [Nocardioides sp. JS614]
          Length = 246

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 88/219 (40%), Gaps = 13/219 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RFKVEYQSRSQ 76
             ++    GD+ H+   V R++ G+ ++L +G     +  +S  GK +    VE      
Sbjct: 16  AGSEVTVEGDEAHHAVAVRRLRVGEQVVLTDGAGTSVVGAVSATGKRVFTVAVESVRVEP 75

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
             +  V  + +  K  R +  ++   E+G+  I P     +      +    ++ R R  
Sbjct: 76  EPEPAVVVVQALPKGERGELAVEVLTEIGVSEIVPWEAARSVTVWKGERATKSLARWRAT 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPN 189
              AA+Q   +  P + P  +   +++     +  +V  ++  G    L+    +     
Sbjct: 136 AREAAKQSRRMRFPSVAPLASTGDVVELLGAADLAVVLHEDATGPVAGLD----VPAAGR 191

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           + +++GPEGG   +E         V  + LG  +LR+ T
Sbjct: 192 IVVVVGPEGGLTEDEVAIFVGAGAVC-VRLGAEVLRTST 229


>gi|220915389|ref|YP_002490693.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953243|gb|ACL63627.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 240

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           L+R+ +      + +   + +  HYL  VLR+  G  + LF+G+ G W + +    +++ 
Sbjct: 3   LRRVHLPPERIGEGRAGLTDEARHYLRDVLRLAPGAAVELFDGRGGAWEATVLDGFEALA 62

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                 +        V  + +  K  ++D ++QK+ E+G   I P     +      +  
Sbjct: 63  LGARRAAPGGGAP--VWLLVALAKGEKIDLVVQKATELGAARIAPFAAERSVVRLEPEKG 120

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                R R     AA QC    +P +  P  L   L                 + +    
Sbjct: 121 EARAARWRRIAEEAARQCGRADVPEVRAPAPLGAALAEVPAGFGAFVFHPGGAALSEA-- 178

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             A +     A ++GPEGG    E+E           SLGPR+LR++TAA+ A+AL+QA 
Sbjct: 179 --APSPAGGYAAVVGPEGGLTDAEREACARAG-ARDTSLGPRVLRAETAAIVAVALLQAR 235

Query: 241 CGD 243
            GD
Sbjct: 236 FGD 238


>gi|88608373|ref|YP_505938.1| hypothetical protein NSE_0036 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600542|gb|ABD46010.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 227

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 122/222 (54%), Gaps = 14/222 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
            T+      + HYL  V+R+++   +++FNG+ GEW++K+++    +   ++ + ++ + 
Sbjct: 11  GTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNH--NFLVPDIQIRPQTASY 68

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQC 138
             D+   F+  K   L  +++++ E+ +  +RP+ +  T+N + +++++  + I AA+QC
Sbjct: 69  PYDINLCFAVPKHKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQC 128

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
             +++P + PP  L+ +    ++   +   DET     S   +  I  + +  I+IGPEG
Sbjct: 129 RRMSIPVLLPPIALKEVETYHEN---VFICDETL----SDSVICDIPILSSYTIVIGPEG 181

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           G+  EE   ++       +SLG  ILR  TAA +A+A V+++
Sbjct: 182 GFSHEELSLINKR-----ISLGRTILRCSTAATSAIAQVRSV 218


>gi|320535676|ref|ZP_08035766.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
 gi|320147468|gb|EFW38994.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
          Length = 256

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 17/249 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV---GK 63
           +K+L V+  + +    K SG  YHYLA VLR + GD ++L     G   ++I  +    K
Sbjct: 1   MKQLLVNAEVDVDGTVKLSGKDYHYLATVLRKRIGDIVILDLPSCGTVAAEIIDIRAQKK 60

Query: 64  SIRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---Q 118
            +  +++   +  +Q    ++  +   I+  ++D +I+++ E+G+  I P+   ++   +
Sbjct: 61  ELDLQIKTGLEGLTQPPPFEIVLLQWLIRGQKMDSVIRQATELGVSRIIPIAGEFSLIKE 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFADETC 172
                 +R R     A +Q   +    I    TL+  LKN +         +++F ++  
Sbjct: 121 ENEKQTERRRRIIKEARQQSGSVIQTEISSVQTLDCALKNLNTAYQKSSIVKLLFTEKKS 180

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
              +S+      +    V I IG EGG   +E   L +  F+ P+ L   ILR++TAA+ 
Sbjct: 181 A--DSMLHTCLSSRPKTVIIAIGAEGGMSVQEVTGLKNAGFI-PVHLHTNILRAETAAIP 237

Query: 233 AMALVQAIC 241
           A A V  I 
Sbjct: 238 ACAAVHTIL 246


>gi|119962358|ref|YP_947974.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter aurescens
           TC1]
 gi|119949217|gb|ABM08128.1| putative protein of unknown function (DUF558) [Arthrobacter
           aurescens TC1]
          Length = 255

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 13/240 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75
              +     G +  +   V R+  G+ + + +G        +   G S +  K       
Sbjct: 17  VPGSTFVLEGAEARHAVTVKRLTTGEPVDIADGAGVRLTGTVVDAGSSTLTVKASEVLFE 76

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDRVRT 129
           +  +  +  + +  K +R +  I+ + E+G+ A+ P  +         +       + ++
Sbjct: 77  EQPEVRLVLVQALAKGDRDELAIETATELGIDAVIPWQSERAIVRWKGERAAKAHAKWQS 136

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENS----LEKLHAI 184
              +AA+Q     +P +        L K   D +  I+  ++      +    L  L   
Sbjct: 137 VVTAAAKQARRAWIPEVRSIVDTVALAKAVADADMAIILHEDAKNPLRTVLEELAALPNE 196

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                V +++GPEGG    E   L     VT L LG  +LRS TA  AA+ L   + G W
Sbjct: 197 GKPREVLLIVGPEGGISPREVTRLSDSGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 255


>gi|261367268|ref|ZP_05980151.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM
           15176]
 gi|282570870|gb|EFB76405.1| RNA methyltransferase, RsmE family [Subdoligranulum variabile DSM
           15176]
          Length = 242

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 7   LK-RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           +  R F         Q   +G   H+LA+V+R + G+ ++L      E+   ++ +    
Sbjct: 1   MPHRYFTRE--LADGQAALTGSDAHHLANVMRARAGEEVVLCGPDGLEYTGTVTAIQPGR 58

Query: 65  IRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
           + F V   + S+ +    V       K  +LD +I+ SVE+G+  I P  +RY     + 
Sbjct: 59  VEFSVSEGAPSKAEPDMAVTLFVGYPKQGKLDEIIRHSVELGVHEIIPFFSRYCVAAPKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSL 178
                +R       AA+Q     +P +  P    + + +      + +F  E  GS   L
Sbjct: 119 EDAKNERYNRIAAEAAKQAGRAQIPHVAMPLENFDAVCRALSAYDKSLFFYEGGGS--PL 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            +L        +A++ G EGG+ +E +    +      + LGPRILR +
Sbjct: 177 RELLTPGCAQRLALVTGSEGGFSTE-EAAAAAEAGAMTVGLGPRILRCE 224


>gi|257068884|ref|YP_003155139.1| hypothetical protein Bfae_17280 [Brachybacterium faecium DSM 4810]
 gi|256559702|gb|ACU85549.1| conserved hypothetical protein TIGR00046 [Brachybacterium faecium
           DSM 4810]
          Length = 262

 Score =  174 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 17/242 (7%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQ 76
                  G++  + A V R+  G+ +LL +    + L++++   K       +E  + + 
Sbjct: 21  GDPLVLDGEEGRHAAKVARIGVGEQVLLTDAPGRQALAEVTVAKKEALELRLLEDPTGAV 80

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
            +   +  + +     R +  ++ + E+G   I P I R +      +       R +  
Sbjct: 81  QRLPRLGLVQALATGGRDEQAVESATELGADRIVPWIARRSVSVWRGEKLRKGRSRWQAT 140

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFAD-ETCGSENSLEKLHAI 184
             +A +QC    +P + P  T   LL             +V  + E+ G  +  E+L   
Sbjct: 141 VRAAVKQCRRPGIPAVDPAVTTTELLAALRERTAAGALVLVLHEQESVGLMSLAEQLRTA 200

Query: 185 AH--IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +   +  + +++GPEGG   EE   LH       + LGP +LRS TA  AA+A++ A+ G
Sbjct: 201 SEDGLEEILLVVGPEGGIAPEELTALHETG-ARSVLLGPEVLRSSTAGPAALAVLSALVG 259

Query: 243 DW 244
            W
Sbjct: 260 RW 261


>gi|222833711|gb|EEE72188.1| predicted protein [Populus trichocarpa]
          Length = 158

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D++I+K+VE+G+ AI+P+    +      +         +    +A EQC    LP + 
Sbjct: 1   MDWLIEKAVELGVSAIQPLQAARSVVRLSGERATKRQAHWQALIEAACEQCGRNRLPALA 60

Query: 148 PPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEK 205
           P   LE  L +      ++  +     S   L +    A     V +LIGPEGG   EE+
Sbjct: 61  PVANLESWLTSVPATAARLALSPRASASLPELAQAEREAWRAGGVTLLIGPEGGLSPEEE 120

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +      F+  +SLGPRILR++TA +  +A + AI G +
Sbjct: 121 DRARRAGFI-GVSLGPRILRTETAGLTCLATLNAILGGF 158


>gi|116490649|ref|YP_810193.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1]
 gi|290890063|ref|ZP_06553146.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429]
 gi|116091374|gb|ABJ56528.1| hypothetical protein OEOE_0585 [Oenococcus oeni PSU-1]
 gi|290480254|gb|EFD88895.1| hypothetical protein AWRIB429_0536 [Oenococcus oeni AWRIB429]
          Length = 253

 Score =  174 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 9   RLFVDFPLCIKTQGKASG----DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           R F++      +  K S     D +H+L  VLR+K+ D + L  G+   +L +++ +   
Sbjct: 4   RFFLENSQEFLSGNKISKKNNPDVFHHLKDVLRVKDKDLVELVAGQ-SAYLVRVNEISAM 62

Query: 65  IRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
             F  +++  S+          +   +K++ LD++IQK+ E+G+  I      Y+     
Sbjct: 63  EVFFNRLDKLSKDPEIPVKTTIVVPLLKSDHLDWLIQKATELGVFKIILTNFSYSVVKDI 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET--CGSEN 176
                + R       AAEQ   L +P I             DH   IV  +E+   G ++
Sbjct: 123 KIEKKLQRYEKIVKGAAEQSHRLLVPEIIYEKKFIEQAGLSDHQIGIVAWEESAKAGEKS 182

Query: 177 SLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +L K+  +A + +    +  + GPEGG   +E + L S  F+T   LGPRILR++TA 
Sbjct: 183 NLFKMIRLAKLDSKFNEIVAVFGPEGGISKKEIKKLESSGFITA-GLGPRILRAETAP 239


>gi|302343725|ref|YP_003808254.1| hypothetical protein Deba_2298 [Desulfarculus baarsii DSM 2075]
 gi|301640338|gb|ADK85660.1| protein of unknown function DUF558 [Desulfarculus baarsii DSM 2075]
          Length = 251

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 8/240 (3%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           +R  V+       + +    +  +   VLR+  GD + L +G      ++++ +GK    
Sbjct: 4   RRFLVEPAALDGPEARLDASEAAHARKVLRLNVGDEVWLVDGHGRRAKARLTSLGKGGAS 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHY 122
            ++E   R    +  +       K   +D++  +  E+ +  +RP +    +    +   
Sbjct: 64  CRIEAVERLTPLRPRLVICPGLAKGPAMDFLAARLTELAVDEVRPFLAARGEVRLRDEDQ 123

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R R     A +QC    LP  + P  LE LL         +   E        + L 
Sbjct: 124 RLERWRRLAGQALKQCGAPLLPEFFAPLDLEALLALAPARAARLILYEGEDGRAMAQVLA 183

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
                  V  LIGPEGG+ + E +   ++ F TP  LG  ILR++TA +A  A+  A  G
Sbjct: 184 EAEGPAEVWALIGPEGGFTAAEVDRAAAVGF-TPCGLGGVILRAETACLAVAAV--ARFG 240


>gi|113955056|ref|YP_730866.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9311]
 gi|113882407|gb|ABI47365.1| conserved hypothetical protein TIGR00046 [Synechococcus sp. CC9311]
          Length = 254

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 10/243 (4%)

Query: 3   IHSHLKRLFVDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
           + + L+RL ++                 D+ HYL  VLR++ G  + + +G+   W   +
Sbjct: 1   MVAELRRLLIEPKRLADRDGNGCLVLRDDERHYLRRVLRLRSGSPVAVVDGRGHLWEGSL 60

Query: 59  SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
              G  +      ++ +  K   +    + ++   +D +++ + E+G+  I+P+    + 
Sbjct: 61  QEEG-QLLLPNSCETTTPAKTPQLGLAIALVRRG-MDDVMRMACELGVDCIQPLQAARST 118

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
               Y  +R +     A EQC+ L +P + P  + +       +N  +  A        +
Sbjct: 119 PQADYKPERWQLILKEAVEQCERLWMPRLLPLASTDDWWTMHGNNDTLAIATTRLEELTA 178

Query: 178 LEKLHAIAHIPN--VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           LE       + +  + + IGPEGG+   E+    S  +  P+SL   ILRS TAA+A + 
Sbjct: 179 LEPWLRRQTLKDNCIWLAIGPEGGWDPLEQAKALSEGWA-PISLSEDILRSSTAAIAGVT 237

Query: 236 LVQ 238
            + 
Sbjct: 238 TLS 240


>gi|126642376|ref|YP_001085360.1| hypothetical protein A1S_2336 [Acinetobacter baumannii ATCC 17978]
          Length = 157

 Score =  173 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 14/161 (8%)

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDIL 141
             K +R+DY IQK+ E+G+  I+ + +   +           +D  +   I+A EQC + 
Sbjct: 1   MSKGDRMDYAIQKATELGVSKIQLLTSERCEMRLKYDRDQKKLDHWQAVAIAACEQCGLN 60

Query: 142 TLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            +P +  P +L   L + D    + V A E        + L  I   P +A+LIGPEGG 
Sbjct: 61  LVPEVLAPISLHEWLNSSDLPVSKFVLAPEKEQK----DVLAGIQ--PELALLIGPEGGL 114

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
              E    +   F+    +G R+LR++TA V A++++    
Sbjct: 115 SDNEITQANQAGFMN-WCIGDRVLRTETAPVVALSILNYRF 154


>gi|78357040|ref|YP_388489.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219445|gb|ABB38794.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 238

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 13/237 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++  F+  P     Q    G + H++  VLRM+ GD   + +GK  E L  I  + K S+
Sbjct: 1   MRTFFL-SPDEWDRQCTLRGSEAHHMIKVLRMRAGDTCRILDGKGREGLFIIRGMDKNSV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM- 124
           + ++          S         K+ R  ++ +K+VE+    I       +Q+   +M 
Sbjct: 60  QLELAETVMHPEPHSRAYIALGWGKSVRRSWIFEKAVELEAAGIWLWQAARSQSKMPDMT 119

Query: 125 -DRVRTYTISAAEQCDILTLPFIYP----PTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            +   +  ++ A+QC    +P +       T L  L + +D   + +  +    +  +L 
Sbjct: 120 KESWHSQLVAGAKQCVNPWIPELKSVAAGVTGLVELAQGFD--RKFILWE--GEAREALL 175

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               +    +   +IGPEGG+  +E   L    F    SLG RILR +TAA+  + L
Sbjct: 176 SGETLGTSGDTLFVIGPEGGFADDEVSLLKESGFAAA-SLGNRILRWETAALLCLGL 231


>gi|111221445|ref|YP_712239.1| 16S ribosomal RNA methyltransferase RsmE [Frankia alni ACN14a]
 gi|111148977|emb|CAJ60657.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 255

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 90/248 (36%), Gaps = 26/248 (10%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQS 80
              SG +  + A V R++ G+ + + +G+       +  V +  I   V  +  +     
Sbjct: 2   FTLSGPEGRHAATVRRLRPGEPVDVTDGRGAALECAVVAVRRDEIDCAVRRRVDAAVPHP 61

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRTYTISA 134
            +  + +  K +R +  ++   E+G+  I P      V+    +      +R       A
Sbjct: 62  RLVVVQALAKGDRGERAVEMLTEVGVDEIVPWSAARSVVRWDGERGGRARERWVRAAAEA 121

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG------SENSLEKLHAI---- 184
           ++Q   L  P +        L +        V   E  G      +  S   L  +    
Sbjct: 122 SKQSHRLHWPVVGDLVGTAELTRRVASAALAVVLHEQAGDPLVGLARRSAAALDGVTAVA 181

Query: 185 --------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                        + +++GPEGG    E + LH    V    LGP +LR+ TA V A ++
Sbjct: 182 SVASAAQPNPAAEILLVVGPEGGIADAEVDALHQAGAVVA-RLGPTVLRTSTAGVVASSV 240

Query: 237 VQAICGDW 244
           V A  G W
Sbjct: 241 VLADLGRW 248


>gi|50955092|ref|YP_062380.1| hypothetical protein Lxx14630 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951574|gb|AAT89275.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 241

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 13/239 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEY 71
           D    I  +   +G +  +   V R + G+ IL+ NG+      ++    G  +   V  
Sbjct: 9   DLDAAIGDRLTLTGPEARHAVTVNRTRPGERILIGNGRGLVAAGEVLVATGSELTIDVAA 68

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMD 125
             R Q ++  +  + +  K +R +  IQ + E+G  A+ P     +             +
Sbjct: 69  LDRIQRREPAITLVQALAKGDRDERAIQAATELGADAVIPWAAARSVSRWEGTKIAKGRE 128

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R  T    A +Q      P +   +T   +      +  +V      G            
Sbjct: 129 RWATIVREAGKQSLRPWTPEVGELSTTRQIAALAVTHRVLVLEPSAGG-----RLTDVTP 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               +A+++GPEGG    E +   +      L LG  ILR+ TA  AA+A++ A    W
Sbjct: 184 DARPLALVVGPEGGIDPAELDVFRAAG-AELLRLGDTILRTSTAGPAALAVLSAATRRW 241


>gi|328953124|ref|YP_004370458.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453448|gb|AEB09277.1| Ribosomal RNA small subunit methyltransferase E [Desulfobacca
           acetoxidans DSM 11109]
          Length = 261

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 10/228 (4%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           +R F         +   S  + H+L  V+R+  GD + + +G    + ++I  +  +   
Sbjct: 19  RRFFAGLNQFRGDEVILSPSESHHLIRVVRLAVGDRVEVSDGCGRIFEAEILSLEPTAAR 78

Query: 68  KVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----T 120
                  S        +    + ++    D +I++  E+G+  + P  +  +        
Sbjct: 79  LRLLNELSVGIESSLKITLGLALVRAEIFDSLIRQVTELGIYRLVPFTSTRSLVRPGGWK 138

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + R +     A +    L LP I PP      L       +++F +E   +      
Sbjct: 139 KSRLLRWQRLAQEALKSSQRLILPEIDPPVDFPDAL-IGPEEVKLMFWEEQRQAHRP-HD 196

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           L A      +  LIGPEGG+ + E +T     F   L LGPR LR +T
Sbjct: 197 LAAWPRPRTIRALIGPEGGFTAAEADTARQAGFNL-LGLGPRRLRVET 243


>gi|54020067|ref|YP_115694.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae
           232]
 gi|6226420|sp|O50188|RSME_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|2654771|gb|AAC32528.1| unknown [Mycoplasma hyopneumoniae]
 gi|53987240|gb|AAV27441.1| putative 26.3 kda protein in cilium adhesion operon (orf5)
           [Mycoplasma hyopneumoniae 232]
          Length = 227

 Score =  172 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+     +     +    +++  V R+K  +N +    ++  +L ++        
Sbjct: 1   MYRFFVNEKQ--ENFFILTNLTLNHIKTV-RIK-NENFICV-YQNEFYLVRLVPNSNKAE 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQNTH 121
             +E    +   ++ V    + +KT   ++ IQK+VE+G+  I P  ++      + +  
Sbjct: 56  I-IEKIKGNNEPKNKVVLALAILKTKSFEFAIQKAVEIGVNEIWPFYSKNVSQKLSGDLE 114

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R     + +A+Q     +P I  P   + LL+   +    + + E      +   +
Sbjct: 115 KKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNI 169

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   +  N  I+IGPEGG+   E +    L F   ++LG RILRS+TAA+  + 
Sbjct: 170 NIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 222


>gi|302528840|ref|ZP_07281182.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302437735|gb|EFL09551.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 245

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 21/232 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK----SIR 66
           F+   +  + +    G++  + A V R++ G+ ++L +G        +  V      S+ 
Sbjct: 4   FLAPAVPAEGRALLDGEEARHAATVRRLRVGEQLVLSDGAGAMARCAVDAVEAGRAASVT 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------N 119
             V  + + +     V    +  K +R +  ++ + E G  AI P     +         
Sbjct: 64  LTVLERWQEEPPALRVHVAQALAKGDRGELAVELATEAGADAIVPWRAARSVARWDDGPR 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPT---TLEFLLKNWDHNCQIVFADETCGSEN 176
               + R R    SAA+Q     +P +  P     L  L         +       G  +
Sbjct: 124 GEKALARWRATARSAAKQARRAHVPAVAEPVGTRELAQLAATMSATLVL-----ESGVAS 178

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            L  L A+    ++ +++GPEGG   EE   L      T + LGP +LR+ T
Sbjct: 179 KLADL-ALPDGGDLLLVVGPEGGITDEELALLEESG-ATTVRLGPTVLRTST 228


>gi|257467709|ref|ZP_05631805.1| putative cytoplasmic protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062002|ref|ZP_07926487.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687678|gb|EFS24513.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 237

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 8/217 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQY 84
                ++L +V R+K  + I   +G+  E+  K+  + K        Q         V+ 
Sbjct: 20  EKSDINHLKNVFRIKLDEEIRAVDGE-KEYFCKVVSIDKKEIILEIEQIFEDRYSHKVKI 78

Query: 85  --IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDIL 141
                 +K +++D  IQK  E+G+  I P+  +          D+       A +QC  +
Sbjct: 79  DAALGILKNDKMDLAIQKLTEIGINKIIPLSVKRGVAKITEKKDKWDLIVREALKQCQAV 138

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP-NVAILIGPEGGY 200
               I     LE +   ++    ++   E          L     +P  V  +IG EGG+
Sbjct: 139 KATEIDEVKKLEEI--EFEKYDLVIVPYECEEEYTLKNLLRNREKLPERVLYIIGSEGGF 196

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             EE E L S      ++LG RILR++TA++    ++
Sbjct: 197 APEEIEFLKSKK-ADIVTLGRRILRAETASIVVGGIL 232


>gi|213417363|ref|ZP_03350505.1| 16S rRNA m3U1498 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 182

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            + R++    L   TQ     D  +++  VLRM  G  + LF+G +  + ++I    K  
Sbjct: 18  RIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQVFDAEIISASKKS 77

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
                 +     ++S +      +  +  ++++ IQKS+E+G+  I P+ +         
Sbjct: 78  VEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDN 137

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           +  +    + +   I+A EQC    +P I PP  L+
Sbjct: 138 ERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALK 173


>gi|325969870|ref|YP_004246061.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
 gi|324025108|gb|ADY11867.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
          Length = 263

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 100/261 (38%), Gaps = 32/261 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSI 65
           L R F   PL      +  G +  YL  VLR++ G  IL  +G+  ++L  ++ +  +S 
Sbjct: 6   LPRSFDGEPL-----LELEGKESQYLTRVLRLQIGQQILGLDGQGRKFLLTLTEIKNQSC 60

Query: 66  RFKVEYQSRS------------QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113
               +                 Q    ++  +    K  + + + +++ E+G   +  V 
Sbjct: 61  TLSCKLVEPGMQVETTDTLPSYQGPYPNLVLLQCLCKGKKEEQIFRQATEIGATTLALVS 120

Query: 114 TRYT---------QNTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNC 163
           +RY          +      DR+      A +Q        + P    L  +   WD   
Sbjct: 121 SRYCVTDLSDKKDKAVRARFDRLEAQIKEALQQSGSPIATNLVPQVLDLRDVPSWWDGQG 180

Query: 164 QIVFADETCGSEN---SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220
             +F  ++  SE        L        V +LIGPEGG+  EE   L    F  P+ L 
Sbjct: 181 LAIFFHQSTRSEEQQTLTSLLKDHPLDKPVCVLIGPEGGFSDEECTFLEKEGF-KPVVLK 239

Query: 221 PRILRSDTAAVAAMALVQAIC 241
             ILRS+TA + A+A +Q + 
Sbjct: 240 TNILRSETAGIYALAAIQVLL 260


>gi|298529346|ref|ZP_07016749.1| protein of unknown function DUF558 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510782|gb|EFI34685.1| protein of unknown function DUF558 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 243

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 108/235 (45%), Gaps = 9/235 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSI 65
           +   ++  P   +       D+ H+L+ VLR+  G+ I + +G+    + ++ +   K  
Sbjct: 1   MHTFYLP-PEKWQEPYCLESDEAHHLSRVLRISAGEKIRVLDGRGRLGIFEVRTSSRKEA 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM- 124
               E   R    Q+ +       K++R  ++++K+VE+G+  +     + +Q    N  
Sbjct: 60  GLFPENIWRVPKPQTRLHLALGWNKSSRRSWLLEKAVELGVWRLVFWTGKNSQGRMDNAS 119

Query: 125 -DRVRTYTISAAEQCDILTLPF-IYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKL 181
                   ++AA+Q      P  ++    ++ L++   +   +I   ++ C  ++ L  L
Sbjct: 120 YQNWHKKIVTAAKQSRNPWFPEPVFLSGNVQELVQYARNIPVRIALWEQEC--QDDLVSL 177

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +     P+  + IGPEGG   EE + L    F  P SLGPR+LR +TAA++ + L
Sbjct: 178 YQAGPEPDRVVAIGPEGGLTQEELQVLMQAGF-KPASLGPRVLRWETAALSVLCL 231


>gi|121997724|ref|YP_001002511.1| hypothetical protein Hhal_0933 [Halorhodospira halophila SL1]
 gi|121589129|gb|ABM61709.1| 16S rRNA m(3)U-1498 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 240

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 34/240 (14%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMK--------EGDNILLFNGKDGEWLSKI 58
           + RL++  PL      + + D                     GD + LFNG+ GE  S++
Sbjct: 1   MPRLYIAQPLSAAAVIELTADAA---------AHARALRLRPGDAVTLFNGEGGEHPSEV 51

Query: 59  SYVGKSIRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
             V +         +    +   + VQ + +  K  R+D  ++K+ E+G+  I PV+T  
Sbjct: 52  VAVERRRVTVRVGAHDPTERELPAAVQLLQAVGKGERMDTAVEKATELGVSEIVPVLTER 111

Query: 117 T-------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFA 168
           T       Q              +A EQC   T P +  P  L +    + D+  ++   
Sbjct: 112 TVVRLNDPQRAAKRRRHWEAVARAACEQCGRNTPPRVAEPVPLAQAWGHSRDYPLRLTLD 171

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                      +L  +      ++LIGPEGG    E E      F+    +GPR+LR++T
Sbjct: 172 PLAD------PRLSELTGAQATSLLIGPEGGLSPTELEAAGEHGFLRG-RVGPRVLRTET 224


>gi|72080539|ref|YP_287597.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae
           7448]
 gi|71913663|gb|AAZ53574.1| 26.3 kDa protein in cilium adhesin operon [Mycoplasma hyopneumoniae
           7448]
          Length = 227

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+     +     +    +++  V R++  +N +    ++  +L ++        
Sbjct: 1   MYRFFVNEKQ--ENFFILTNLTLNHIKTV-RIR-NENFICV-YQNEFYLVRLVPNSNKAE 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQNTH 121
             +E    +   ++ V    + +KT   ++ IQK+VE+G+  I P  ++      + +  
Sbjct: 56  I-IEKIKGNNEPKNKVVLALAILKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLE 114

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R     + +A+Q     +P I  P   + LL+   +    + + E      +   +
Sbjct: 115 KKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNI 169

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   +  N  I+IGPEGG+   E +    L F   ++LG RILRS+TAA+  + 
Sbjct: 170 NIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 222


>gi|71893552|ref|YP_278998.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyopneumoniae
           J]
 gi|71851679|gb|AAZ44287.1| putative 26.3 kDa protein in cilium adhesin operon [Mycoplasma
           hyopneumoniae J]
          Length = 227

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 17/234 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+     +     +    +++  V R++  +N +    ++  +L ++        
Sbjct: 1   MYRFFVNEKQ--ENFFILTNITLNHIKTV-RIR-NENFICV-YQNEFYLVRLVPNSNKAE 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-----TQNTH 121
             +E    +   ++ V    + +KT   ++ IQK+VE+G+  I P  ++      + +  
Sbjct: 56  I-IEKIKGNNEPKNKVVLALAILKTKSFEFAIQKAVEIGVSEIWPFYSKNVSQKISGDLE 114

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R     + +A+Q     +P I  P   + LL+   +    + + E      +   +
Sbjct: 115 KKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNI 169

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   +  N  I+IGPEGG+   E +    L F   ++LG RILRS+TAA+  + 
Sbjct: 170 NIPDNPQNTIIIIGPEGGFDDVEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 222


>gi|290960538|ref|YP_003491720.1| hypothetical protein SCAB_61581 [Streptomyces scabiei 87.22]
 gi|260650064|emb|CBG73180.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 246

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 13/244 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
             VD       +    G +  +   V R++ G++++L +G+       +       R  V
Sbjct: 6   FVVDRFDGRGPEIVLDGPEGRHAVSVKRLQPGEDVVLTDGRGRWVEGVVKAAEGKDRLVV 65

Query: 70  EYQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNT 120
                       +  +  + +  K +R +  ++   E+G+ AI P            +  
Sbjct: 66  MDVGCLYEEPPAEPRLTVVQALPKGDRGELAVETMTEVGIDAIVPWAAARCITQWRGERG 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + + R     A +Q      P +    T + +              E+     +  +
Sbjct: 126 LKALAKWRATAREAGKQSRRTRFPEVADAATSKQVAALLVKADFAAVLHESGDETLATAE 185

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A      + +++GPEGG   EE              LGP +LR+ TA  AA AL+   
Sbjct: 186 LPAAGE---IVLVVGPEGGVSPEELALFGEAG-AGAYRLGPSVLRTSTAGTAAGALLLGR 241

Query: 241 CGDW 244
            G W
Sbjct: 242 TGRW 245


>gi|327539023|gb|EGF25657.1| Ribosomal RNA small subunit methyltransferase E [Rhodopirellula
           baltica WH47]
          Length = 280

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 51/280 (18%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           +R +V          +   ++  + + V+R++ GD I LF+G   +  +++  V K    
Sbjct: 3   RRYYVPDLQTQAPVVQLPDEEASHASRVMRVQTGDRIELFDGCGHQADAEVVSVSKRECV 62

Query: 67  FKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123
            + +       + S  V       K +R   MI++  E+G+  + P++   TQ       
Sbjct: 63  VRCDPIEDVDREPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQRPPKENF 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----------------NWDHNCQIV 166
           +D++R   I + +Q     L  I  P       +                  W     +V
Sbjct: 123 LDKLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQWSWQRVLV 182

Query: 167 FADETCG---------------------SENSLEKLH----AIAHIPNVAILIGPEGGYH 201
              ++                        ++   +++     +   P    LIGPEGG  
Sbjct: 183 AMPDSPPLSATDVEPTGVRQTGAAQTGVGQSDARQINTGQSGLNDRPRTLALIGPEGGLS 242

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             E +    +     + LG RILR +TAA    A+V A  
Sbjct: 243 EAEHQRCVDVG-AESIGLGRRILRIETAA----AIVAARL 277


>gi|78212815|ref|YP_381594.1| hypothetical protein Syncc9605_1285 [Synechococcus sp. CC9605]
 gi|78197274|gb|ABB35039.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 243

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 5/227 (2%)

Query: 8   KRLFVDFP-LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +RL +    L        + ++ HYL  VLR++ G+ + + +G      + +    + + 
Sbjct: 5   RRLLLSPDRLEQGGSVLLNTEEQHYLRRVLRLRCGEQVDVIDGCGRLTRATLME-PQMLG 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMD 125
                Q+   + +  +    + ++   +D +++ + E+G+  I+P+          +  +
Sbjct: 64  LDSSVQNIEPSPKPQLGLAVALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           R  T    A EQC+ L +P ++    L   +   D         E+              
Sbjct: 123 RWATIIREAVEQCERLWIPQLHEVNGLSEWIGEQDGLRFAGVTRESVAPSLDQCLRQQGN 182

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
               + ++IGPEGG+ S E+        V P+ +G  ILRS TAAVA
Sbjct: 183 ASQTIWVVIGPEGGWTSAEQNLFAEAG-VRPVRMGATILRSSTAAVA 228


>gi|169628757|ref|YP_001702406.1| hypothetical protein MAB_1667 [Mycobacterium abscessus ATCC 19977]
 gi|169240724|emb|CAM61752.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 258

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +V        Q    GD+ H+ A VLRM+ G+ +++ +G        ++ V ++ +  +
Sbjct: 7   FYVPRVPSAGEQVLLDGDEGHHAARVLRMRVGEPVMVCDGAGEVGDGVVASVDRTGLAIE 66

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +         V  + +  K++R D  +  +VE G   + P   +             
Sbjct: 67  VTGRWSVAAVNPKVTVVQALPKSDRSDLAVDLAVEAGADEVIPWQAQRCVSRWDAHKAEK 126

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLE 179
              R      +A+ Q     +P +    +   L  L+        +V             
Sbjct: 127 GRRRWEAVAQAASRQSRRAHVPSVPELHSTAQLAELVGARAAGGAVVLVLHESAESGLGA 186

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
               ++   +V +++GPEGG   EE   L       P+ LGP +LR+
Sbjct: 187 LGARLSSASSVVLIVGPEGGVADEELRILADAGAA-PVRLGPTVLRT 232


>gi|118586988|ref|ZP_01544420.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163]
 gi|118432610|gb|EAV39344.1| hypothetical protein OENOO_58048 [Oenococcus oeni ATCC BAA-1163]
          Length = 253

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 18/238 (7%)

Query: 9   RLFVDFPLCIKTQGKASG----DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           R F++      +  K S     D +H+L  VLR+K+ D + L       +L +++ +   
Sbjct: 4   RFFLENSQEFLSGNKISKKNNPDVFHHLKDVLRVKDKDLVELV-ADQSAYLVQVNEISAM 62

Query: 65  IRF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
             F  +++  S+          +   +K++ LD++IQK+ E+G+  I      Y+     
Sbjct: 63  EVFFNRLDKLSKDPEIPVKTTIVVPLLKSDHLDWLIQKATELGVFKIILTNFSYSVVKDT 122

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSEN 176
                + R       AAEQ   L +P I             DH   IV  +E+   G ++
Sbjct: 123 KIEKKLQRYEKIVKGAAEQSHRLLVPEIIYEKKFIEQAGLSDHQIGIVAWEESAKSGEKS 182

Query: 177 SLEKLHAIAHIPN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
           +L K+  +A   +    +  + GPEGG   +E + L S  F+    LGPRILR++TA 
Sbjct: 183 NLFKMIRLAKRDSKFNEIVAVFGPEGGISKKEIKKLESSGFIAA-GLGPRILRAETAP 239


>gi|225848975|ref|YP_002729139.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644488|gb|ACN99538.1| conserved surface protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 222

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 12/224 (5%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSD 81
            + D+YH+   V R+KEGD + + + +   +L +I  + K+      ++ Q         
Sbjct: 3   LTDDEYHHAVKVRRLKEGDKVEVNDLQGNIYLGEILKIEKNKALIKPIQKQDIKIPDYKI 62

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYNMDRVRTYTISAAEQ 137
             Y   P + +++D +I+   ++G+    PV+++ +          + +     +++ +Q
Sbjct: 63  TLYQCMPNQLSKIDDIIEPISQLGVDRFVPVLSKNSAVKQSDVEKKIQKWEKIALNSIKQ 122

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    I  P  L  +  N   + ++VF ++    E   + L       N +I+IG E
Sbjct: 123 CRRLYPVSIDKPVKLSNI--NSYDDLKVVFYEKEY--ERKTKDLIG-KTFQNCSIVIGNE 177

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG+  +E   L    F+ PLSLG  IL+ +TA +  +  ++ I 
Sbjct: 178 GGFKEDEINLLVDKGFL-PLSLGNYILKMETAIIVGICQIKIIL 220


>gi|302560714|ref|ZP_07313056.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302478332|gb|EFL41425.1| RsmE family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 14/244 (5%)

Query: 11  FVDFPLCIKTQGK--ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIR 66
           FV         G+    G +  +   V R++ G+ ++L +G       ++  +     + 
Sbjct: 6   FVVDDFATDGSGRHVLDGPEGRHAVAVKRLRAGEAVVLTDGAGRWAEGEVDGTEGKDRLI 65

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            ++ +      +   +  + +  K +R +  ++   E+G+  I P            +  
Sbjct: 66  VRLGHVVEEPEEFPRLTVVQALPKGDRGEVAVETMTEVGVDVIVPWSASRCITQWKGERG 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
             ++ + R     A +Q   +  P +    T + +              E+         
Sbjct: 126 LKSLAKWRATAREAGKQSRRVRFPRVADAATTKQVASLLAEADFAAVLHESGVEP---LA 182

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
              +    +V +++GPEGG   EE              LG  +LR+ TA  AA AL+   
Sbjct: 183 TAGLPASGDVVLVVGPEGGVSPEELAAFEGAG-ARVCRLGRSVLRTSTAGTAAGALLLGR 241

Query: 241 CGDW 244
            G W
Sbjct: 242 TGRW 245


>gi|149198581|ref|ZP_01875625.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155]
 gi|149138296|gb|EDM26705.1| hypothetical protein LNTAR_18700 [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 14/240 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64
           +++ F D    +    K    +  ++   LRMKEGD +LL NG+     +KI+ +    +
Sbjct: 1   MRKFFCDELFEVGQLVKIDKTESRHILQTLRMKEGDELLLMNGEGLLADAKIAKIEGRNN 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
           +  ++   + +   +  +    +P     L  +++++VE+G+ ++  +  +Y+ +     
Sbjct: 61  LFCELLQVTHAPRPKLKISLFVAPPSNGTLALILKQAVELGVHSVYLMACQYSVSKSKKE 120

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI--VFADETCGSENSLEKLH 182
             V+   ISAA+Q     LP +    T +  L     N     V +D+    ENS     
Sbjct: 121 KNVQAELISAAKQSGNPYLPKVLSGLTFKEALALAPANNFYGAVPSDDFSAPENS----- 175

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               I    + IGPEGG+   E + +  LP   PL++GP ILR +TA  +  +++ +  G
Sbjct: 176 ----IGEAGVWIGPEGGFSDSELQEIQKLPAC-PLAIGPYILRVETAVNSVCSVLMSKYG 230


>gi|258405682|ref|YP_003198424.1| 16S ribosomal RNA methyltransferase RsmE [Desulfohalobium retbaense
           DSM 5692]
 gi|257797909|gb|ACV68846.1| protein of unknown function DUF558 [Desulfohalobium retbaense DSM
           5692]
          Length = 244

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 6/231 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFK 68
            ++             G ++ +L   LR+  GD + L NG+      +I  + GK  R  
Sbjct: 7   FYLPPSEWDPAGMTLQGQEFTHLRKALRLGPGDAVQLTNGRGDVADGRIEAIQGKKARIT 66

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-- 126
           VE  +    + S +       K+ R  + ++K+ E+    +      ++Q    +  +  
Sbjct: 67  VESITSVDRRDSQIVVAVGWAKSLRRGWFLEKAAELEARGVYLWQAEHSQGRIPDATKAN 126

Query: 127 VRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +   ++ A+Q     LP +   P  L  LL+         F  E   +E        +A
Sbjct: 127 WQGQLVAGAKQSGNPWLPELEVFPGGLAELLEATADIDHRFFLWENATAEEGFHP-PPLA 185

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
                  ++GPEGG+   E E L +   V P+SLG R+LR +TAA+  + L
Sbjct: 186 DGERALAILGPEGGFADSEVELLRAHN-VRPVSLGRRVLRWETAALLCLGL 235


>gi|311895971|dbj|BAJ28379.1| putative ribosomal RNA small subunit methyltransferase E
           [Kitasatospora setae KM-6054]
          Length = 247

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 12/236 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVEYQSR 74
              T  +  G +  + A V R++ G+ + L +G+       +S +    ++   V     
Sbjct: 15  APGTTVRLDGAEGRHAAAVKRLQPGEALTLADGRGRGADGTVSALHGKDALDVLVAAVRE 74

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
                  +  + +  K +R +  ++   E G+ AI P            +     + + R
Sbjct: 75  EPAPAPRITVVQALPKGDRGELAVETMTEAGVDAIVPWAASRCITQWKGERGAKALAKWR 134

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                A +Q   L  P +    T   LL             E      +   L A     
Sbjct: 135 ATAREAGKQARRLRFPEVGDALTTRQLLPLLAAADFAAVLHEEGALPLAGADLPAAGE-- 192

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            + +++GPEGG   +E     +     P  LGP +LR+ TA VAA AL+    G W
Sbjct: 193 -IVLVVGPEGGVSPDEIAA-FAEAGAAPYRLGPSVLRTSTAGVAAGALLLGRTGRW 246


>gi|313678552|ref|YP_004056292.1| hypothetical protein MBOVPG45_0458 [Mycoplasma bovis PG45]
 gi|312950389|gb|ADR24984.1| conserved hypothetical protein TIGR00046 [Mycoplasma bovis PG45]
          Length = 227

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD           +     ++    R+   ++  L N     +   +      I 
Sbjct: 1   MHRFFVDQK--ENDYFILNEKIIKHIKSS-RL-FNEHF-LCNYLGRFYECFLESNKAKI- 54

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120
             V+  S S    +++      IK  R +++IQK+ E+G+  I P+ ++Y   T      
Sbjct: 55  --VKELSISHEYTNEIILAAPIIKIKRFEWLIQKATELGVSRIIPMNSKYVDQTIVKHEF 112

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +DR      +AAEQ    T+P +    T E ++ N + + +I  A E    ++ ++K
Sbjct: 113 SKKIDRFNEIIKNAAEQSFRNTVPELESIKTFEEIILN-NQDKKIYVAYENKELDSQIDK 171

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   +      +++GPEGG    E +          +SLG  ILR++TA +  ++
Sbjct: 172 IDTNS-----ILIVGPEGGLSDSEVDFALKNN-CFIVSLGKTILRAETACIYMLS 220


>gi|307266432|ref|ZP_07547968.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918540|gb|EFN48778.1| protein of unknown function DUF558 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 194

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 9/195 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++++F+D            G+ +H+L +VLR+K G+ I+  +G   E+ ++I  + K  +
Sbjct: 1   MRKIFIDRQNIKGEFVYIEGEDFHHLVNVLRLKRGNEIVASDGL-KEYAARIEEIKKDKL 59

Query: 66  RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------ 118
              +E +  S T+ + ++       K+++++ +IQK  E+G+    PV+TRYT       
Sbjct: 60  ILFLERELESNTESALEISLFQGLPKSDKMELIIQKCAEIGVKKFIPVVTRYTVVDITKS 119

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           N +  + R R  +  A +Q     +P I  P + E  +   D     +   E   +    
Sbjct: 120 NINKKIARWRKISEEACKQSGRTGVPEICMPISFEEAINQVDKFNLCIIPYEKEQTSKLK 179

Query: 179 EKLHAIAHIPNVAIL 193
           E L     +  +  L
Sbjct: 180 EVLKKAKGVKKLEFL 194


>gi|311113633|ref|YP_003984855.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310945127|gb|ADP41421.1| RsmE family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 267

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 15/241 (6%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
              +    +G + H+ A V R+  G+N+ L +G+       +S +               
Sbjct: 29  TAGSTFTLTGPEAHH-AKVKRLAIGENLDLADGQGHRIHGIVSAISSKGLEVTVQNLDKD 87

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
                V  + +  K NR    I+   E+G+ ++ P     +      +       + +  
Sbjct: 88  DNSLSVSLVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNT 147

Query: 131 TISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             +AA+Q     +P +    + + L   ++        V+      +E   E L  I + 
Sbjct: 148 VSAAAKQSRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYS 207

Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           P+    + IL+GPEGG    E E          L LG  ILR+ TA  AA+  +  + G 
Sbjct: 208 PDNPTRIYILVGPEGGITEREIELFTRAGAHKAL-LGTEILRASTAGAAALCTINVVLGR 266

Query: 244 W 244
           W
Sbjct: 267 W 267


>gi|167912563|ref|ZP_02499654.1| hypothetical protein Bpse112_18894 [Burkholderia pseudomallei 112]
          Length = 200

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 14/189 (7%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 8   AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 126

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADET 171
            +     +   R    ++ EQC    LP I P    +  L        D   +++ +   
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPATPADGELRLLLSPRA 186

Query: 172 CGSENSLEK 180
                SL  
Sbjct: 187 SVPFASLPA 195


>gi|240169914|ref|ZP_04748573.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 248

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +VD      T     GD+  + A V R++ G+ ++L +G+      ++   G+  +  +
Sbjct: 6   FYVDALPDPGTLAVVDGDEGFHAATVRRIRPGEEVVLGDGEGDLARCRVERAGRDGLAAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V  +  +   +  V  + +  K+ R +  I+ + E G  A       R V +        
Sbjct: 66  VLERWSTVPARPAVTVVQALPKSERSELAIELATEAGADAFVAWQAARCVASWNGSRVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179
            + R R+   SAA Q     +P +  P +   L   +++      +V A     +    E
Sbjct: 126 GLRRWRSVARSAARQSRRAYIPPVDGPLSTAALTVRVRDEVARGAMVLALHESATARLAE 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              A+A   ++ ++IGPEGG   EE + L     V  + LGP +LR+ T
Sbjct: 186 V--ALAQANSLMLVIGPEGGIAPEEIDALTGAGAV-AVRLGPTVLRTST 231


>gi|159903322|ref|YP_001550666.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888498|gb|ABX08712.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9211]
          Length = 251

 Score =  168 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 16/250 (6%)

Query: 4   HSHLKRLFVDFPLCIKTQ-----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
            + L+RL +                   ++ HYL  VLR+K GD I + NG    W   +
Sbjct: 1   MAELRRLLIGQDRIENIDKNDRLLLLKPNETHYLTRVLRLKPGDEIFIVNGYGSLWRGCL 60

Query: 59  SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYT 117
                              ++++     + +   +  D +++   E+G+   +P+I+  +
Sbjct: 61  EKSDSLTLLSSLTNPEIFHQRANPLICLAVVLPKKGFDEILRFCTEVGVDIFQPLISERS 120

Query: 118 QNTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV---FADET 171
            N       + R ++    A EQ + L +P + PP   +  +         +     +  
Sbjct: 121 INQDIGILRLKRWQSIINEAVEQSERLWMPELRPPIRFQDWVTESSIGAVSIGTTRENRY 180

Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           C  E  L +L     + +V I IGPEGG+ S E            +  G  ILR  TAA+
Sbjct: 181 CELETWLAQLS--NDLSHVWIAIGPEGGWSSTELSLALKHG-AQYVQFGETILRVSTAAI 237

Query: 232 AAMALVQAIC 241
              A + A  
Sbjct: 238 -CSAQLMASW 246


>gi|303246600|ref|ZP_07332878.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans
           JJ]
 gi|302491940|gb|EFL51818.1| protein of unknown function DUF558 [Desulfovibrio fructosovorans
           JJ]
          Length = 241

 Score =  168 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 10/233 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            ++  P         +G +  + A VLR K G+ I  F+G   E L +I+ V +  R ++
Sbjct: 7   FYIP-PGAFGEPYALTGGEAAHCAKVLRKKAGEIIRAFDGLGREGLFRITAVSRD-RVEL 64

Query: 70  EYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMD 125
           E +S ++      +   +    ++ R D+ ++K+VE+G   I       +Q        +
Sbjct: 65  EARSLAEAPLPATRLYLAAGFSRSTRRDFFLEKAVELGAAGIFFWQAARSQGRMPEAPKE 124

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEF--LLKNWDHNCQIVFADETCGSENSLEKLHA 183
             +   ++AA+QC    LP +   +      +     H  +     E  G +  + +L  
Sbjct: 125 SWQATLVAAAKQCGAANLPELDTVSGGAAGLVAACSHHFDRRYLLWEAPGLDRRI-RLDD 183

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +        ++GPEGG    E        +  PLSLG R+LR +TA +A +AL
Sbjct: 184 VGAPGEALFVLGPEGGLTDAEAAIFQDAGYA-PLSLGERVLRFETAGLAVLAL 235


>gi|291320322|ref|YP_003515584.1| hypothetical protein MAGa4150 [Mycoplasma agalactiae]
 gi|290752655|emb|CBH40628.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 227

 Score =  168 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 21/235 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD                 ++    R+   ++  L N  +  +   +      I 
Sbjct: 1   MHRFFVDTK--ENDYFILDEKIIKHIKSA-RL-ANEHF-LCNYLNKFYECYLEGNKAKI- 54

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120
             ++  S +    ++V      IK  R ++++QK+ E+G+  I P+ +++   T      
Sbjct: 55  --IQELSINHEYLNEVVLAAPVIKIKRFEWLLQKATELGVSRIIPMSSKFVDQTIIKYEF 112

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           +  +DR      +AAEQ     +P +   TT E ++ + + + +I  A E    E+ ++K
Sbjct: 113 NKKIDRFNEIIKNAAEQSFRNVVPKLEKITTFEEIILS-NQDKKIYVAYENKEVESQIDK 171

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   +      +++GPEGG    E +          +SLG  ILR++TA +  ++
Sbjct: 172 IETNS-----ILIVGPEGGLSKAEIDFALQNN-CFIVSLGKTILRAETACMYMLS 220


>gi|167464493|ref|ZP_02329582.1| hypothetical protein Plarl_18376 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 163

 Score =  168 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+       T  +  GD  H+L  V+R + G+ I++ +G   E L++I+ V K++ 
Sbjct: 1   MQRYFIPKEQFGSTSVRIEGDDAHHLVRVMRAQAGNKIIVSDGLSREALAQITEVDKAVV 60

Query: 67  FKVEYQSRSQTKQSDVQYIFS--PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
                + R  T +  +Q   +    K ++++ +IQK  E+G     P ++  T      +
Sbjct: 61  TAAIIEERPMTAEPRIQVWVAQSLPKADKMETVIQKGTEIGAARFLPFVSERTVVQYDAK 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159
                  R +     AAEQ     +P +    + + +L+  
Sbjct: 121 KETKRTQRWQKIAKEAAEQAHRNRIPVVEGVHSWKQILEQA 161


>gi|163840667|ref|YP_001625072.1| 16S ribosomal RNA methyltransferase RsmE [Renibacterium
           salmoninarum ATCC 33209]
 gi|162954143|gb|ABY23658.1| coserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 256

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 99/249 (39%), Gaps = 17/249 (6%)

Query: 10  LFVDF----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
            F D      L      + +GD+ H+ A V R+   +++ + +G        +      +
Sbjct: 6   FFADAASIADLEPGDDFELAGDEGHHAATVKRIAVDEHLDIVDGVGLRLNCIVLQTAPGT 65

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------Q 118
           +  +V+ +      Q  +  + +  K  R +  I+ + E+G+ A+ P     +      +
Sbjct: 66  LTVRVQSRLAEPAPQPRLVLVQALAKDGRDELAIETATELGVDAVIPWQADRSIVRWRPE 125

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSE 175
               +M +      +A +Q      P +  P     L+K       +  +V  +E   + 
Sbjct: 126 RVEKSMAKWAKTIQAATKQARRARTPLLLDPVDSPGLVKRIALLPKSRMLVLHEEA--TT 183

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + L+ +     +  + +++GPEGG    E E   S      L LGP +LRS TA  AA+ 
Sbjct: 184 DLLQLVDQYKDVEELLLVVGPEGGMSDRELELFSSAG-SEKLRLGPHVLRSSTAGPAAVV 242

Query: 236 LVQAICGDW 244
           L+    G W
Sbjct: 243 LLSEALGRW 251


>gi|317484787|ref|ZP_07943685.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316923969|gb|EFV45157.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 260

 Score =  168 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 14/237 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS---YVGKSIR 66
            F++  L      +    + H+L  VLR++EG+++ + +G+  E   ++       K++ 
Sbjct: 18  FFLEPDLW-HEPYELDASESHHLTRVLRIREGEDVRVLDGRGREGRFRVLPYKKNAKAVA 76

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---NTHYN 123
            ++  +      +S V       K  R  ++++K+VE     I       +Q    +   
Sbjct: 77  LRLLDEWTYPEPESKVILAAGWTKAARRGWILEKAVEFEASGIWLWQAERSQFPVPSDIK 136

Query: 124 MDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDH---NCQIVFADETCGSENSLE 179
            +  +    + A+QC    LP +   P  ++ L+   +      + V  +    S  SL 
Sbjct: 137 -ESWQGQLAAGAKQCRNPWLPELRTMPGGVDELIALAEELGCEHRHVLVESGHKSVMSLT 195

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               +        ++GPEGG+ ++E E L    F+ P +LG R+LR +TAAV  + L
Sbjct: 196 P-DTLGQPGRTLCVVGPEGGFTAQEVEKLTRAGFL-PATLGERVLRWETAAVLCLGL 250


>gi|300741540|ref|ZP_07071561.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567]
 gi|300380725|gb|EFJ77287.1| RNA methyltransferase, RsmE family [Rothia dentocariosa M567]
          Length = 255

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 15/241 (6%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
              +    +G + H+ A V R+  G+N+ L +G+       +S +               
Sbjct: 17  TAGSTFTLTGPEAHH-AKVKRLAIGENLDLADGQGHRIHGIVSAISSKGLEVTVQNLDKD 75

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
                V  + +  K NR    I+   E+G+ ++ P     +      +       + +  
Sbjct: 76  DNSLSVSLVQALAKDNRDILAIETGTELGIRSVIPWSADRSIVRWKGERATKAHQKWQNT 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
             +AA+Q     +P +    + + L   ++        V+      +E   E L  I + 
Sbjct: 136 VSAAAKQSRRALIPTVEELYSSQELAEHIRELTDQGAYVYILHEQATEPLSEYLRKIGYS 195

Query: 188 PN----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           P+    + IL+GPEGG    E E          L LG  ILR+ TA  AA+  +  + G 
Sbjct: 196 PDNPTRIYILVGPEGGITEREIELFTRAGAHKAL-LGTEILRASTAGAAALCTINVVLGR 254

Query: 244 W 244
           W
Sbjct: 255 W 255


>gi|95929633|ref|ZP_01312375.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134330|gb|EAT15987.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
          Length = 254

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 11/215 (5%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDY 96
            + G+ + + +     + ++I+ + +     V   Q  +      +    +  +  R + 
Sbjct: 42  ARVGEIVTVEDPFQQCYRARITGLDEGDATVVPFEQIDAVESSLKICVCQALPEKERFEL 101

Query: 97  MIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPT 150
           ++QK  E+G+  I P ++R++              R     + A  QC    LP +    
Sbjct: 102 VLQKMTEIGVTRIVPFVSRHSTTVEQRDAGQKKSHRWPDVLLRAGRQCRRAQLPELMEVV 161

Query: 151 TLEFLLKNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             E +L    D + +++ +++      S  +    A    +A+++GPEGG+  EE     
Sbjct: 162 DFETMLDALADWDVKLLLSEKNTAW--SFREGIGTAKPDRIAVIVGPEGGFADEEITLAQ 219

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           S   V P+S+G RILR++TAA+ A  L Q   GD+
Sbjct: 220 SRG-VVPVSVGRRILRTETAAIVAATLAQFCVGDY 253


>gi|118466945|ref|YP_881243.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium 104]
 gi|118168232|gb|ABK69129.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 253

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            + D      +     GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +
Sbjct: 6   FYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDGAGGLARCEVEHAGRDGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V  +         V  + +  K+ R +  ++ + E G          R V   +      
Sbjct: 66  VLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179
            + R R    +AA Q     +P +    +   L   +++      +V A     ++   +
Sbjct: 126 GLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESATDRLTD 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +A   ++ ++IGPEGG   +E   L     ++ + LGP++LR+ T
Sbjct: 186 V--PVAQAKSLFLVIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231


>gi|303326762|ref|ZP_07357204.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3]
 gi|302862750|gb|EFL85682.1| RNA methyltransferase, RsmE family [Desulfovibrio sp. 3_1_syn3]
          Length = 250

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 8/232 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            F   P     +    G +  +L  VLR+  GD + L +G+       +  V K   R +
Sbjct: 5   FFYLPPEAWGREVSLEGQEAKHLGQVLRLVPGDEVSLLDGQGRTGRFAVRAVSKKSARLE 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR-- 126
              +S +    S      +  K  R  + ++K+VE+G  A+      ++Q       R  
Sbjct: 65  CLRESFTPRPASLAVMALAFSKAVRRGFFMEKAVELGAHAVWLWQGDHSQGKLPAGARDS 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +   I+ A+Q     LP +   T  ++ L++      Q +   E    EN       +A
Sbjct: 125 CQGQMIAGAKQSGNPWLPEVRALTGGVDELVELSRVADQRILPWEMQ--ENVPMLTPDLA 182

Query: 186 HIPNVAI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
               V + +IGPEGG+ + E + L +  F   +SLG RILR +TAA   + +
Sbjct: 183 GRTGVTVYIIGPEGGFSARELDALRAAGFA-AISLGARILRCETAATLCLGI 233


>gi|195998640|ref|XP_002109188.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens]
 gi|190587312|gb|EDV27354.1| hypothetical protein TRIADDRAFT_52966 [Trichoplax adhaerens]
          Length = 246

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 9/241 (3%)

Query: 7   LK--RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGK 63
           +   R +++  L    +    GDQ H++ +V+R++ G+ + + NG++    ++I +Y G 
Sbjct: 1   MPCYRFYLNSNLVKNGRVALQGDQLHHMKNVMRLRVGETVEIINGRNQLAQARIDAYQGN 60

Query: 64  SIRFKVEYQSRSQ--TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
            I      Q  +Q    +  +  I   I++  LD +I+K  E+G+       +   + + 
Sbjct: 61  QIAHVNIDQVLTQLVLDKPRINLIQPLIRSKGLDLVIEKCTELGVSHFYLYASELGEISQ 120

Query: 122 YNMDRVRT---YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
           ++  R +      ISA +QC  L LP +     L   LK   +   I F D        +
Sbjct: 121 FSSARCKKLTEIAISAIKQCGRLDLPTLTFADRLHN-LKLQSNVHPICFGDTRHLDNAQV 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                        + IGPE G+  +E   L +    T + + P ILRS+TA++   AL  
Sbjct: 180 GFTPQSTLAQCKTVCIGPEKGFSDKEINYLENQLGATGIKISPFILRSETASITLTALTS 239

Query: 239 A 239
            
Sbjct: 240 Y 240


>gi|148377635|ref|YP_001256511.1| hypothetical protein MAG_3690 [Mycoplasma agalactiae PG2]
 gi|148291681|emb|CAL59067.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 227

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FVD                 ++    R+   ++  L N  +  +   +      I 
Sbjct: 1   MHRFFVDTK--ENDYFILDEKIIKHIKSA-RL-ANEHF-LCNYLNKFYECYLEDNKAKI- 54

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------ 120
             ++  S +    ++V      IK  R ++++QK+ E+G+  I P+ +++   T      
Sbjct: 55  --IQELSINHEYLNEVVLAAPVIKIKRFEWLLQKATELGVSRIIPMNSKFVDQTIIKYEF 112

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
           +  +DR      +AAEQ     +P +    T E ++ + + + +I  A E    E+ ++K
Sbjct: 113 NKKIDRFNEIIKNAAEQSFRNAVPKLEKIATFEEIILS-NRDKKIYVAYENKEVESQIDK 171

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +   +      +++GPEGG    E +          +SLG  ILR++TA +  ++
Sbjct: 172 IETNS-----ILIVGPEGGLSKGEIDFALQNN-CFIVSLGKTILRAETACIYMLS 220


>gi|33863058|ref|NP_894618.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634975|emb|CAE20961.1| Conserved hypothetical protein 46 [Prochlorococcus marinus str. MIT
           9313]
          Length = 258

 Score =  166 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 13/248 (5%)

Query: 4   HSHLKRLFV-----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
            + L+RL V     D             D+ HYL  VLR++ G  + L +G    W + +
Sbjct: 1   MAELRRLLVESQRFDAITASDHLLSLKQDEVHYLRRVLRLRNGQAVALVDGVGHFWEAHL 60

Query: 59  SYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRY 116
              G  ++      S S Q  +   Q   + +   R  + +++ S E+G+  I+P+ +  
Sbjct: 61  -QAGDFLKLDTSPSSPSLQQPRHRQQLGLAVVLPKRGFEEVLRMSCELGVNLIQPLRSDR 119

Query: 117 T-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                     R R     A EQ + L  P + P      L K+   +     A       
Sbjct: 120 CTPQAEERPLRWRVILREAVEQSEQLWQPELLPIAEASALWKSPPDHAVFALATTRRQGL 179

Query: 176 NSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             L+ L       I  V + IGPEGG+   E+    +  +V P++LG  ILR+ TAAVAA
Sbjct: 180 IDLQLLMEGLTPEINQVTVAIGPEGGWSPLEECAAEAAGWV-PVALGDSILRTCTAAVAA 238

Query: 234 M-ALVQAI 240
              +V + 
Sbjct: 239 AQTMVSSR 246


>gi|239979382|ref|ZP_04701906.1| 16S rRNA m3U1498 methyltransferase [Streptomyces albus J1074]
 gi|291451257|ref|ZP_06590647.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074]
 gi|291354206|gb|EFE81108.1| hypothetical protein SSHG_01550 [Streptomyces albus J1074]
          Length = 243

 Score =  166 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 14/243 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKS-IRF 67
             VD            G +  +   V R+  G+ ++L +G   G + + +S  GKS +  
Sbjct: 6   FLVDE--VSAGTVVLDGPEGRHAVSVRRLNPGEPVVLTDGAGRGAFGTVVSAEGKSTLYV 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
            V+        +  +  + +  K +R +  ++   E G+ AI P            +   
Sbjct: 64  AVDEVREEPAPRPRITVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGERGL 123

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            ++ + R     A +Q   L  P +  P +   +              E  GS       
Sbjct: 124 KSLGKWRATAREAGKQSRRLRFPEVADPHSTRQVAALLGGADFAAVLHEE-GSAPLARA- 181

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            A+    ++ +++GPEGG  SEE              LGP +LR+ TA  A +AL+    
Sbjct: 182 -ALPEEGSIVLVVGPEGGVSSEELAA-FGEAGAGAFRLGPSVLRTSTAGTAGVALLLGRT 239

Query: 242 GDW 244
           G W
Sbjct: 240 GRW 242


>gi|225375403|ref|ZP_03752624.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM
           16841]
 gi|225212739|gb|EEG95093.1| hypothetical protein ROSEINA2194_01028 [Roseburia inulinivorans DSM
           16841]
          Length = 162

 Score =  166 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 9/155 (5%)

Query: 94  LDYMIQKSVEMGMGAIRPV------ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           ++++IQK+VE+G+  + PV      +    +     + R +    SAA+Q     +P + 
Sbjct: 1   MEWIIQKTVELGVYEVIPVAMKNCVVKLDDKKAKSKVTRWQAIAESAAKQSKRSLIPEVK 60

Query: 148 PPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            P + +  +      + ++V  +   G   +   +  I    ++A+ IGPEGG+  EE E
Sbjct: 61  MPMSYKEAVAYAKKLDVKLVPYENEHGMAGTKAAMEQIKKGESIAVFIGPEGGFAPEEIE 120

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            +     +  +SLG RILR++TA + A+A++    
Sbjct: 121 MVRDE--MQLISLGRRILRTETAGIVALAILGYQL 153


>gi|120404793|ref|YP_954622.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957611|gb|ABM14616.1| protein of unknown function DUF558 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 246

 Score =  166 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            G++ H+ A V R + G+ + L +G        +  V K  +  +
Sbjct: 5   FYVDVVPAPGDLAVVDGEEGHHAATVCRTRPGEELDLADGAGTVAHCVVEDVAKGRLTAR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121
           V+ +      +  V  + +  K+ R +  ++ + E G  A                    
Sbjct: 65  VQDRHLVAPPRPTVTVVQALPKSERSELAVELATEAGADAFIAWQASRCVARWDGAAKVD 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN---WDHNCQIVFADETCGSENSL 178
             + R R    SAA Q     +P +    +   L+++    +    +V  +         
Sbjct: 125 KGLRRWRAVARSAARQSRRPYIPDVDGVVSTRDLVESTRCAEPGTVLVLHESATRPLADA 184

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               A      + +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 185 ----AAGQNDPLTLIVGPEGGVADDELAALTDAGAV-AVRLGPTVLRTST 229


>gi|304373087|ref|YP_003856296.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           hyorhinis HUB-1]
 gi|304309278|gb|ADM21758.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           hyorhinis HUB-1]
 gi|330723289|gb|AEC45659.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma hyorhinis
           MCLD]
          Length = 225

 Score =  166 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 20/236 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV     I            +L  V+     D  +    ++  +L+K  +  K+  
Sbjct: 1   MHRFFVFEK--INNYFILDKRVLQHL-KVI-KSRNDKFICV-YQEKFYLTKFVFPNKAEI 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----H 121
             +E  + +   +       + +KT   ++++QK+VE+G+  I P  ++  +        
Sbjct: 56  --IEELNLNHEFKKQPMLAIAILKTKAFEFILQKAVELGVAKIIPFYSKNVEQKLGNDID 113

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +   + AA+Q     +P +  P     +L    +   I  A E    ENS    
Sbjct: 114 KKVQRWQEMVLHAAQQSFRNIIPKVEKPIKFHEVLNIEKNFKFI--AHEKENEENSQLLF 171

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + +       LIGPEGG+  +E     +  F   +SLG RILRS+TAA+  +A +
Sbjct: 172 DSDS-----LFLIGPEGGFTEDEIAKAKAKNF-KVISLGKRILRSETAAMFCLARL 221


>gi|227833632|ref|YP_002835339.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184635|ref|ZP_06044056.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454648|gb|ACP33401.1| hypothetical protein cauri_1808 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 246

 Score =  166 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 94/245 (38%), Gaps = 15/245 (6%)

Query: 11  FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSI 65
           F+   L    +       G +  +   V RM  G++++L +G      + I+      ++
Sbjct: 6   FLHPDLSLAEVGQPVGLDGAEGRHAVTVKRMGPGEHLVLIDGSGRRATATITDTQGKDTL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              V+           V  + +  K+ R +  +  + + G   I              + 
Sbjct: 66  AALVDDLVILPEPSPRVVVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVSKWDAKK 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + +  +  ++AA+Q     +P +  P T   L +       +V  +E    E  L+
Sbjct: 126 APKALSKWESAAVAAAKQSRRARVPAVRGPLTTRQLCQEISGARALVLHEEA---EVRLK 182

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L  +     + +L+GPEGG  +EE   L        + LGP +LR+ +A++ A+A +  
Sbjct: 183 DLTDLDAAETIYLLVGPEGGIGAEELARLQDAGAA-AIKLGPEVLRTASASMVALASIGT 241

Query: 240 ICGDW 244
           +   W
Sbjct: 242 LTARW 246


>gi|239617245|ref|YP_002940567.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1]
 gi|239506076|gb|ACR79563.1| protein of unknown function DUF558 [Kosmotoga olearia TBF 19.5.1]
          Length = 231

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 14/237 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-K 68
            FV+     + +      + H++  V+R+K GD ++  +GK   +   +  + K+    +
Sbjct: 5   FFVER--VEEKRLIFDEIEAHHM-KVVRVKPGDELVATDGKGTLYEFVLQELSKNYSVGR 61

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNMDR 126
           +  +         V    + +K  RL  +++KS E+G   I       T        +++
Sbjct: 62  MLSKKVFHHDDRTVIVSVASMKWLRLRLILEKSTELGADRIEIFNCERTVARVDQRKVEK 121

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            R     AA+Q     LP +     +   L  ++ +   +F D    S ++L+    I  
Sbjct: 122 FRRIVKEAAKQSVNPFLPEV----VIHEKLPRFNSDDLNIFLDFKKESISTLQ--EKIRG 175

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              V I++GPEGG+  EE   +        +SLG RILR++TA +A+++ V    G 
Sbjct: 176 SNVVRIIVGPEGGFTKEEIREMQQDS--ISVSLGSRILRTETAVIASLSFVNFSIGR 230


>gi|33865690|ref|NP_897249.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH
           8102]
 gi|33632860|emb|CAE07671.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 242

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 7/215 (3%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
                    + HYL  VLR + GD I + +G    W +++     ++R  V        +
Sbjct: 21  DPTVPLERSEQHYLRRVLRCRVGDTIDVVDGCGSLWQAQLISAD-ALRVSVPADQIEPVR 79

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTHYNMDRVRTYTISAAEQ 137
              +    S I+    +  ++ + E+G+  I+P+    +     +  +R  T    A EQ
Sbjct: 80  VPRLGLGLSLIRRG-FEDALRMACELGVDEIQPLRADRSTPQAEHRPERWATILQEAVEQ 138

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGP 196
           C+ L LP + P   L     + D     V       +    + L+   +    V +L+GP
Sbjct: 139 CERLWLPTLKPACKLAQWPNSSDPVAVGVT--RRADTPALRDWLNQTTNCNGMVWLLVGP 196

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           EGG+ + E++   +  +  P+ LG  ILRS TAAV
Sbjct: 197 EGGWSNAEEQLSITREW-QPVHLGSSILRSSTAAV 230


>gi|15829013|ref|NP_326373.1| hypothetical protein MYPU_5420 [Mycoplasma pulmonis UAB CTIP]
 gi|14089957|emb|CAC13715.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 223

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 21/237 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+           + +  +++  V R++  + I ++  +   +L K+   GK   
Sbjct: 1   MFRFFVEQK--EDNYFILTNEILNHI-KVARVQNKNFICIY--EQVFYLCKLE--GKKA- 52

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----H 121
             +E    +   ++ V    S I T R +  IQK+ E+G+    P++++  +        
Sbjct: 53  LIIEKIDANHEFKNQVILAMSVINTKRFELTIQKAAELGVSLFIPMLSQNVEQKLGNDID 112

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R +T  ++A EQ     +  I  P +   +++    N  I         E + + L
Sbjct: 113 KKLQRWKTIALNACEQSFRNKVMEITYPKSFNEVIEMEVKNKYIAH-------EKAKDFL 165

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              +   N   LIGPEGG+  +E +      F   + LG RILR++TAA   ++ + 
Sbjct: 166 TKSSFETNSLFLIGPEGGFSQKEIDLAQEKSF-ELIWLGKRILRAETAAFFVLSRIN 221


>gi|145223290|ref|YP_001133968.1| hypothetical protein Mflv_2703 [Mycobacterium gilvum PYR-GCK]
 gi|315443750|ref|YP_004076629.1| hypothetical protein Mspyr1_21400 [Mycobacterium sp. Spyr1]
 gi|145215776|gb|ABP45180.1| protein of unknown function DUF558 [Mycobacterium gilvum PYR-GCK]
 gi|315262053|gb|ADT98794.1| conserved hypothetical protein TIGR00046 [Mycobacterium sp. Spyr1]
          Length = 251

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 17/230 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            GD+ H+ A V R + G+++ L +G        +  V K  +  +
Sbjct: 5   FYVDSLPGPGELAVVDGDEGHHAATVCRTRVGEHLDLSDGAGAVAHCVVEDVAKGRLSAR 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTH 121
           V+ +         V  + +  K++R +  I+ + E G  A                    
Sbjct: 65  VQDRILVPVPTPAVTVVQALPKSDRSELAIELATEAGADAFLGWQAARCVARWDGAAKVD 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL---KNWDHNCQIVFADETCGSENSL 178
             + R R    SAA Q     +P +  P + + L+   ++      +V  +       + 
Sbjct: 125 KGLRRWRAVARSAARQSRRPHIPEVRGPVSTQDLVGFTRDAGPATVLVLHESA-----TR 179

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               A     ++ +++GPEGG   EE   L        + LGP +LR+ T
Sbjct: 180 PLTDADLTARSLTLVVGPEGGVADEELAALTDAG-AMAVRLGPTVLRTST 228


>gi|51244548|ref|YP_064432.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54]
 gi|50875585|emb|CAG35425.1| hypothetical protein DP0696 [Desulfotalea psychrophila LSv54]
          Length = 158

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIY 147
           +D +IQK  E+G     P     +Q            +R +  ++ A +QC       + 
Sbjct: 1   MDLVIQKCTELGAEVFIPYDAARSQGKLDASQARKKQERWQRISLEACKQCMRPQPMTVA 60

Query: 148 PPTTLEFLLKNWD---HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            P +   L+          +++F +E   +  +L  L  +A    V I++GPEGG   EE
Sbjct: 61  SPASFVDLVTAESVEGPRLKLIFWEEESAT--NLYNLPGLADASGVDIILGPEGGISREE 118

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            E   +  + T +SLG RILR++TAA+ A+ LVQ + G
Sbjct: 119 IEIARAHGWQT-VSLGQRILRAETAAIVALTLVQYLTG 155


>gi|212702535|ref|ZP_03310663.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098]
 gi|212673976|gb|EEB34459.1| hypothetical protein DESPIG_00554 [Desulfovibrio piger ATCC 29098]
          Length = 245

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 7/234 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSI 65
           L R ++             G +  +L  VLR+  G+ +LL +G+       I+    K  
Sbjct: 3   LHRFYLPPEQWAHD-LWLEGQEAKHLVQVLRLAPGEEVLLLDGQGRSGRFAIAETAKKKA 61

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYN 123
           R  ++ +  +   +S      +  K  R  + ++K+VE+G  AI      ++Q       
Sbjct: 62  RLILQEEQMAPAPESRAVMALAFSKAVRRGFFMEKAVELGAHAIWLWQGDHSQGKLPADA 121

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPT-TLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            +  R   I+ A+QC    LP +   T  ++ L++        +   E   + N L    
Sbjct: 122 AESCRGQLIAGAKQCGNPWLPQVEALTGGVDELVRRAATVDCRILPWEMQDTVNMLTPRL 181

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           A      V  +IGPEGG+   E ++L +  F T +SLG R+LR +TAA   + L
Sbjct: 182 AGRPGTTV-YVIGPEGGFSQRELDSLRAAQF-TFVSLGARVLRCETAATLCLGL 233


>gi|46580095|ref|YP_010903.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46449511|gb|AAS96162.1| conserved hypothetical protein TIGR00046 [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233906|gb|ADP86760.1| protein of unknown function DUF558 [Desulfovibrio vulgaris RCH1]
          Length = 249

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           ++  F+            +G +  +L  V+R+  GD I L +G   E + +++   + S+
Sbjct: 1   MRTFFLPSEQWSP-PYALTGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNSV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123
               E  +      S         K  R  ++++K+VE+   AI      ++Q+   +  
Sbjct: 60  ELTPESITTHPEPVSRAVLAVGWGKAVRRSWLMEKAVELEASAIWLWQAEHSQSPVPDDI 119

Query: 124 MDRVRTYTISAAEQCDILTLPFI-YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            +      ++ A+Q     LP +   P  +E LL+      +     E    E  LE   
Sbjct: 120 KESWLAQMVAGAKQSANPWLPALQTLPGGIEELLRASSDFERRFMLWEGETPEALLEA-K 178

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +  +     ++GPEGG+ + E + L     + P+SLG R+LR +TAA+  + L     G
Sbjct: 179 DVGGVGTTLYVVGPEGGFSAREVKALRE-GGMMPVSLGQRVLRWETAALLCLGL--HWWG 235

Query: 243 D 243
            
Sbjct: 236 R 236


>gi|315604659|ref|ZP_07879722.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313671|gb|EFU61725.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 262

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 18/247 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEY 71
              L +  +    G +  + A V R+  G+ + + +G+        I     ++   V  
Sbjct: 15  PASLGVGERATLGGSEGRHAASVRRIGAGERVDIVDGRGLRLTCDVIGSDKDTLSLTVRE 74

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMD 125
             R      +V  + +  K  R +  ++   E+G+  + P  ++                
Sbjct: 75  SRREDAPVPEVVLVQALAKGGRDEAAVEICTEIGVDRVIPWASQRAIVQWKGPKAEKGRA 134

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           + +    +AA+Q     +P +        L   + +      + F      SE+    L 
Sbjct: 135 KWQAVARAAAKQSRRAFVPPVEDAVDSARLSAWIASLTAEGGVAFVCHEEASESLGAALA 194

Query: 183 AI-------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            I       +    +A+++GPEGG  +EE   L     +T + LG  +LRS TA   A+ 
Sbjct: 195 RIRLGSAAGSLPARIALVVGPEGGIGAEESAQLVGAGALT-VGLGAHVLRSSTAGAVALT 253

Query: 236 LVQAICG 242
           L++A  G
Sbjct: 254 LIRAAAG 260


>gi|123968258|ref|YP_001009116.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. AS9601]
 gi|123198368|gb|ABM70009.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. AS9601]
          Length = 257

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 20/248 (8%)

Query: 7   LKRLFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           L RL +             + S ++ HYL  V+R+K G  I + NG+   W +      K
Sbjct: 4   LTRLIISHERIENIKNNNLELSKEEAHYLNKVMRIKNGKKIFIANGEGSLWKATKV---K 60

Query: 64  SIRFKVEYQSRS---QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           +   ++    +    Q ++  +  I   I  +  + +++   E+G+  I+P+ +    N 
Sbjct: 61  NDCLEIIKSKKPYLIQEQEIHLLGIAVVIPKSGFEDILKMCTEIGIDYIQPLFSERQVNK 120

Query: 121 H----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCG 173
           +      + R       A EQ + L  P I     +   LK+ D+  ++   +  +ET  
Sbjct: 121 NLNFSRKLLRWNLIINEAVEQSERLWKPSILNGMDIIEWLKSRDNQERLSISITREETLY 180

Query: 174 SENSLEKLHAIAHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             N   +           I    IGPEGG+  +E +       +T + L   ILR+ TA+
Sbjct: 181 DLNQWLRKQQEFGNKKGGIFWNVIGPEGGWSDKEIDFFKKNN-ITFVKLSDTILRTSTAS 239

Query: 231 VAAMALVQ 238
           + A +++ 
Sbjct: 240 INASSILN 247


>gi|262203051|ref|YP_003274259.1| hypothetical protein Gbro_3161 [Gordonia bronchialis DSM 43247]
 gi|262086398|gb|ACY22366.1| protein of unknown function DUF558 [Gordonia bronchialis DSM 43247]
          Length = 249

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 20/245 (8%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS--IRFKV 69
           V  P    T    SG +  +   V R+  G+ I++ +G     + ++  V     +  +V
Sbjct: 11  VPEP---GTDAVLSGPEGRHAVTVTRVAVGERIVIGDGAGSTAVCEVQAVESKDTLIARV 67

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNM 124
              +        V  + +  K+ R +  +  + E G   I P      + R+       +
Sbjct: 68  REFAYVAPPDPQVTVVQALPKSERSELAVDLATEAGADVIVPWQAARCVARWAGKADKGV 127

Query: 125 DRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKN--WDHNCQIVFADETCGSENSLE 179
            + R    SAA+Q     +P I      T +  L  +         +  +E  G    L 
Sbjct: 128 AKWRAAASSAAKQSRRAWIPEITDLATTTDVRALCADTIATGGLVAILHEEATGGLRELP 187

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +A    + ++IGPEGG    E + L +L    P+ LGP ILR+ TAA  A+  +  
Sbjct: 188 ----LAQANRIVLVIGPEGGLDDGEVDDLTALG-AEPVLLGPEILRTSTAAAVALGAIGV 242

Query: 240 ICGDW 244
           +   W
Sbjct: 243 LTERW 247


>gi|295396065|ref|ZP_06806248.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971006|gb|EFG46898.1| RsmE family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 259

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 20/254 (7%)

Query: 10  LFVDFPLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRF 67
                PL   T       +   +   V RM  G+ + L +G        I     +S+  
Sbjct: 6   FLTQTPLAGATGTITVGPEVAGHAVRVRRMGAGEELELIDGTGMRLRGTIQEGTPESLTL 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
            V   +    ++  +  + +  K +R    I+ + E+G+ A+ P   + +      +  H
Sbjct: 66  SVTEVTEEPQQRPRLALVQALSKNDRDIQAIEAATEVGVDAVIPWAAQRSIADWPAKKAH 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--------- 172
               +      +A  Q     +P +        + +      +++  DET          
Sbjct: 126 KMAAKWSNVLTAATLQARRTRVPELGELIRGTAVTQLVTPTSRVIVLDETESTGLTEAVN 185

Query: 173 --GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             G  N+ +   +   I  + +++GPEGG    E + L S    T + LGP ILR+ TA 
Sbjct: 186 DLGQGNTTQDNISQGDIDQIVVIVGPEGGITPAEIDALVSAGARTAV-LGPTILRASTAG 244

Query: 231 VAAMALVQAICGDW 244
             A+A+VQ + G W
Sbjct: 245 PVALAIVQTLLGRW 258


>gi|254432379|ref|ZP_05046082.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
 gi|197626832|gb|EDY39391.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
          Length = 271

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 21/255 (8%)

Query: 3   IHSHLKRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI- 58
           +   L+RL VD PL              + HYL  VLR+++GD   + +G    W + + 
Sbjct: 1   MGRELRRLLVD-PLRLTEAGGLLPLERGELHYLRRVLRLRQGDRFAVVDGLGRLWSANLQ 59

Query: 59  SYVGKSIRFKVEYQ------SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112
           +   +     +  Q       +       ++   +P + +  + +++ + E+G+  I+ +
Sbjct: 60  TDPARQEGAALLEQPFERPLEQGPRPAPPLRLAIAPPRRDG-EVLLRMACELGIDQIQWL 118

Query: 113 ITRYT-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET 171
               +  +     +R R+    A EQC+ L LP    P            +  ++ A   
Sbjct: 119 SAERSVVDAPPREERQRSVLREALEQCERLWLPRSSGPEPAAAWFARQPEDQLLLLATTR 178

Query: 172 CGSENSLEKLH-------AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
           C     L ++        A      V + +GPEGG+   E+E      ++  +SLG  IL
Sbjct: 179 CSDAAPLLEVLEREGSKVASPDSSTVTLAVGPEGGWSPLEQEQALERGWL-AVSLGDGIL 237

Query: 225 RSDTAAVAAMALVQA 239
           R+ TAAVA + L+ A
Sbjct: 238 RTSTAAVAGVTLLSA 252


>gi|260435986|ref|ZP_05789956.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109]
 gi|260413860|gb|EEX07156.1| RNA methyltransferase, RsmE family [Synechococcus sp. WH 8109]
          Length = 237

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
              L        + ++ HYL  VLR++ G+ + L +G      + +    K +      Q
Sbjct: 5   PDRLEQGGSVLLNIEEQHYLRRVLRLRCGERVDLIDGCGRLTTATLVE-PKLLALDKPAQ 63

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYT 131
                 Q  +    + ++   +D +++ + E+G+  I+P+          +  +R  T  
Sbjct: 64  LIESLAQPHLGLAVALMRRG-MDEVVRMACELGIDRIQPLRCDRCVPQADHRPERWATII 122

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
             A EQC+ L  P +     L   +++      +    ET          H    +    
Sbjct: 123 REAVEQCERLWTPQLLDLKDLSQWMEDERGQRLVGVTRETSTPALDQWLRHQADPVQLTW 182

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           +++GPEGG+  EE +       + P+ +G  ILRS TAAVA
Sbjct: 183 LMVGPEGGWTEEELKQFTEAQ-IQPVQMGSTILRSSTAAVA 222


>gi|269956977|ref|YP_003326766.1| hypothetical protein Xcel_2190 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305658|gb|ACZ31208.1| protein of unknown function DUF558 [Xylanimonas cellulosilytica DSM
           15894]
          Length = 256

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 14/241 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRS 75
            +       G +  + A V R + G+ + + +G        +    G  +R  VE     
Sbjct: 16  VVGGTYVLDGGEGRHAAVVQRKRIGERVDVVDGGGTRLRCVVVAAEGAQVRLGVEEVVTE 75

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
                 +  + +  K +R +  ++ +VE G  A+ P     +           +  R   
Sbjct: 76  PAPDVALTLVQALAKGDRDELAVEAAVETGADAVLPWQAERSVVVWRGDRAARSRARWVA 135

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLE-KLHA 183
              +A +Q     +P +    T   L              +V  +E      +       
Sbjct: 136 TVRAAVKQARRAWVPDVGDAVTTPQLAARVRDVVAAGGVALVLHEEATTPVAAAPLPTPD 195

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            A+ P + +++GPEGG    E   L        + LGP +LR+ TA   A+AL+    G 
Sbjct: 196 AANPPELLVVVGPEGGIGDAELTRLTDAG-ALAVRLGPHVLRTSTAGPVAVALLAQRLGR 254

Query: 244 W 244
           W
Sbjct: 255 W 255


>gi|78779053|ref|YP_397165.1| hypothetical protein PMT9312_0668 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712552|gb|ABB49729.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 257

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 20/248 (8%)

Query: 7   LKRLFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           L RL +             + S ++ HY+  V+R+K G  I + NGK   W +    V  
Sbjct: 4   LTRLIISHERIENIKNNNLELSKEEAHYINKVMRIKNGKEIFISNGKGSLWKA--IKVKN 61

Query: 64  SIRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
                ++++      + +   +       K+   + +++   E+G+  I+P+ +    N 
Sbjct: 62  DCLEIIQFKKPYLFQEQEIYLLGIAVVIPKSG-FEDILKMCTEIGIDFIQPLFSERQVNK 120

Query: 121 H----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCG 173
           +      + R  +    A EQ + L  P I     +   LK+ D+  ++   +  ++T  
Sbjct: 121 NLNFSRKLLRWNSIINEAVEQSERLWKPSILNGMDIIEWLKSRDNQERVSISITREDTTY 180

Query: 174 SENSLEKLHAIAHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             N   +    A      I    IGPEGG+ S+E +  +    +T + L   ILR+ TA+
Sbjct: 181 DLNQWIRKQQEAVNKKGGIFWNVIGPEGGWSSKEIDFFNKNN-ITFVKLSDNILRTSTAS 239

Query: 231 VAAMALVQ 238
           + A +++ 
Sbjct: 240 INASSILN 247


>gi|198284928|ref|YP_002221249.1| hypothetical protein Lferr_2857 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666821|ref|YP_002427610.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249449|gb|ACH85042.1| protein of unknown function DUF558 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519034|gb|ACK79620.1| conserved hypothetical protein TIGR00046 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 241

 Score =  164 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 17/229 (7%)

Query: 7   LKR--LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GK 63
           + R  L+ D  L             H+L  VLR + G  + LFNG    + + ++ + G 
Sbjct: 1   MPRIHLYADSDLPESGPFLLPAGASHHLLKVLRARHGQELTLFNGDGWMYQASLTGISGA 60

Query: 64  SIRFKVE-YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
             +  +   Q RS      +Q      +  R D+ +QK+VE+G+  I+PV  R+      
Sbjct: 61  QAQLAIRGRQPRSTGSPLAIQVFLPLTRGERWDWSLQKAVELGVRWIQPVACRHGVVQLS 120

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  + R R   I+A EQ    T+P + PP  LE     W       F  +  G + 
Sbjct: 121 EARGEKRLARWRDIVIAACEQSGSTTIPELAPPVALETA---WAGVRGAAFVLDPEGGQR 177

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +  H     P + +L GPEGG  +EE     +  F   L +GPRILR
Sbjct: 178 FTDLGH---PGPEITLLSGPEGGLAAEEVAAAQAHGF-RSLRMGPRILR 222


>gi|320104496|ref|YP_004180087.1| hypothetical protein Isop_2973 [Isosphaera pallida ATCC 43644]
 gi|319751778|gb|ADV63538.1| protein of unknown function DUF558 [Isosphaera pallida ATCC 43644]
          Length = 270

 Score =  164 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 17/235 (7%)

Query: 5   SHLKRLFVDF--PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG 62
           + L R                   ++  +L+ VLR + GD + +F+      ++++  +G
Sbjct: 12  ARLDRFHHPDLGDPRPGVSIGLGEEEGRHLSIVLRHRRGDRVEVFDSLGRVVIARVESLG 71

Query: 63  KSIRFKVEYQSR-----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
                 V    +      +T +  V+   +P K  RL+++I+KS E+G+  +  +  R  
Sbjct: 72  SKRESTVLVVEQVGGILDRTPRRRVRLAVAPPKGERLEWLIEKSAELGVEHVTLIHCRRG 131

Query: 118 ----QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
               +     +D++R   I  A+QC    L  I         L       + +   +   
Sbjct: 132 VASLEGGSPKLDKLRRKVIEVAKQCRRNRLMTID-ALDFRTYLAQETAAWRWLCHPDDAQ 190

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                    A++    +A LIGPEGG+ S+E     +  +  P  LG  ILR +T
Sbjct: 191 PPEP----EALSDPQPLAALIGPEGGFESDELAEARAWGW-RPTRLGSPILRVET 240


>gi|239906459|ref|YP_002953200.1| hypothetical protein DMR_18230 [Desulfovibrio magneticus RS-1]
 gi|239796325|dbj|BAH75314.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 241

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            F+            +G +  + A VLR + G+ +  F+G     L +I  VG+  +   
Sbjct: 7   FFIPPEQFA-APFSLTGGEASHCAKVLRKRPGELVRAFDGTGHHGLFRIETVGRDRVELI 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN--MDR 126
            E    +      +       ++ R D+ ++K+VE+G   I       TQ        + 
Sbjct: 66  PESLEETPPPARRLHIAAGFSRSARRDFFLEKAVELGAAGIVFWQAERTQGKMPGDPKEA 125

Query: 127 VRTYTISAAEQCDILTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
                I+AA+QC    LP +   P     L K      +     E       L      A
Sbjct: 126 WTAGLIAAAKQCGAALLPTLACVPGGAAGLTKAGQAYPRRFLLWEDPAVSRPLTPTDLAA 185

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               + + +GPEGG+   E  T+ +  F+ P++LGPR+LR +T
Sbjct: 186 AGDTLCV-VGPEGGFTDAEATTITAAGFI-PVTLGPRVLRWET 226


>gi|32476393|ref|NP_869387.1| hypothetical protein RB10359 [Rhodopirellula baltica SH 1]
 gi|32446938|emb|CAD78844.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 280

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 93/267 (34%), Gaps = 47/267 (17%)

Query: 8   KRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
           +R +V          +   ++  + + V+R++ GD I LF+G   +  +++  V K    
Sbjct: 3   RRYYVPDLQTQVPVVQLPDEEASHASRVMRVQTGDQIELFDGCGHQADAEVVSVSKRECV 62

Query: 67  FKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123
            + +       + S  V       K +R   MI++  E+G+  + P++   TQ       
Sbjct: 63  VRCDAIEAVDREPSIAVDLAIGLPKPDRAKEMIERLTELGVARVFPIVFERTQRPPKENF 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----------------NWDHNCQIV 166
           +D++R   I + +Q     L  I  P       +                  W     +V
Sbjct: 123 LDKLRRIVIESCKQSGRNVLMTIESPIDFVSFTETLAASSATNDEEDPQPRQWSWQRVLV 182

Query: 167 FADETCG---------------------SENSLEKLH----AIAHIPNVAILIGPEGGYH 201
              ++                        ++   +++     +   P    LIGPEGG  
Sbjct: 183 AMPDSPPLSATDVEPTGVRQTGAAQTGVGQSDARQINTGQSGLNDRPRTLALIGPEGGLS 242

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDT 228
             E +    +     + LG RILR +T
Sbjct: 243 EAEHQRCVDVG-AESIGLGRRILRIET 268


>gi|120602447|ref|YP_966847.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris
           DP4]
 gi|120562676|gb|ABM28420.1| protein of unknown function DUF558 [Desulfovibrio vulgaris DP4]
          Length = 249

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++  F+       +    +G +  +L  V+R+  GD I L +G   E + +++   ++I 
Sbjct: 1   MRTFFLSSEQWS-SPYALTGQEARHLTKVVRVHAGDLIRLLDGAGREGVFRVTGTSRNIV 59

Query: 67  -FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123
               E  +      S         K  R  ++++K+VE+   AI      ++Q+   +  
Sbjct: 60  ELTPESITTHPEPVSRAVLAVGWGKAVRRSWLMEKAVELEASAIWLWQADHSQSPVPDDI 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            +      ++ A+Q     LP +   P  +E LL+      +     E    E  LE   
Sbjct: 120 KESWLAQMVAGAKQSANPWLPALRTLPGGIEELLRASSDFERRFMLWEGETPEALLEA-K 178

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +  +     ++GPEGG+ + E + L     + P+SLG R+LR +TAA+  + L     G
Sbjct: 179 DVGGVGTTLYVVGPEGGFSAREVKALRE-GGMMPVSLGQRVLRWETAALLCLGL--HWWG 235

Query: 243 D 243
            
Sbjct: 236 R 236


>gi|289549080|ref|YP_003474068.1| hypothetical protein Thal_1310 [Thermocrinis albus DSM 14484]
 gi|289182697|gb|ADC89941.1| protein of unknown function DUF558 [Thermocrinis albus DSM 14484]
          Length = 247

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 16/239 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            ++R             +  G++  ++    R K G  + +F  +   +L  +  + K  
Sbjct: 8   AMQR--TVATFRRGDLFRIEGEELKHIFA-RRWKVGQKVEVF-WEGRLFLCVLESISKKG 63

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QN 119
                +E  S    +     Y   P++  ++D++++K  E+G   + P+++  +    Q 
Sbjct: 64  AVCRILEEISTRPAEPYVYLYQCVPVEIGKMDFIVEKVSEVGAYQLTPLLSSRSFQNLQA 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                +R R    S+ +QC       I P T LE  LK     C ++   ++ G E  L 
Sbjct: 124 LEKRYERWRRIAFSSFKQCGRPIPLEIAPVTHLED-LKCRGGVCMVL---DSFGGEIWLS 179

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +++ +  +  V +++GPEGG+  +E + L    F+ P+ L P  LRS+TAAV A+ LV 
Sbjct: 180 EVN-LKDVKEVHLVVGPEGGFSEKEVQLLREKGFL-PVRLRPYTLRSETAAVLAVGLVM 236


>gi|167895917|ref|ZP_02483319.1| hypothetical protein Bpse7_19396 [Burkholderia pseudomallei 7894]
          Length = 193

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 9/165 (5%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161
            +     +   R    ++ EQC    LP I P    +  L     
Sbjct: 136 GERADKRVSHWRGVVRASCEQCGRNRLPEIAPVRGFDAWLDALPA 180


>gi|328946995|ref|YP_004364332.1| ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
 gi|328447319|gb|AEB13035.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
          Length = 269

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 33/267 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI--LLFNGK-DGEWLSKISYVGK 63
           +++  V+ PL         G +YHYL  VLR+K GD I   L +G      ++KI    K
Sbjct: 1   MRQFIVETPLDSDGCIGIQGKKYHYLNSVLRVKCGDMIYARLLDGSLQQMTVAKIVSCEK 60

Query: 64  SIRFK----------VEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPV 112
            I  +          +   +    K     Y+F    K  ++D +I+++ E G+  I PV
Sbjct: 61  KIILQAAGKLNCNDSISQAAPVLEKPKAEIYLFQFEAKPPKMDLIIRQATECGVCGIIPV 120

Query: 113 ITRYTQN-----THYNM----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---- 159
              + Q               +R +     A +Q        ++   ++E     W    
Sbjct: 121 EGEFCQKGNIESARKKSESGDERWQRIVTEARQQSGSPVETKVFYSVSVEEACGFWSSLQ 180

Query: 160 -DHNCQIVFADETCGSENSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
            +H   +V  + + G+++    L            +A+ +G EGG   +E   +    F+
Sbjct: 181 AEHKAALVLYERSDGTKSIYNALKNADVIKKENAKIAVAVGAEGGISVQEISIMKESGFI 240

Query: 215 TPLSLGPRILRSDTAAVAAMALVQAIC 241
            P+     ILR +TA++  +A +Q + 
Sbjct: 241 -PVHFDTNILRCETASLYGIAALQTVL 266


>gi|325963346|ref|YP_004241252.1| hypothetical protein Asphe3_19630 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469433|gb|ADX73118.1| conserved hypothetical protein TIGR00046 [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 244

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 86/239 (35%), Gaps = 12/239 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75
                    G +  +   V R+  G+ + + +G       ++     S +  + E     
Sbjct: 2   AAGEVFVLEGQEARHAVTVKRLAPGEPVDIVDGAGTRMRGRVVAASASGLEVECETLVFE 61

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
           +   + +  + +  K +R +  I+ + E+G+ A+ P  +  +              + ++
Sbjct: 62  EQPGTRLVLVQALAKGDRDELAIETATELGIDAVIPWQSERSIVRWKGDRAAKAHAKWQS 121

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHA--IA 185
              +AA+Q     +P +        L    +     V   E         LE       +
Sbjct: 122 VVTAAAKQARRAWVPEVRAAVDTAALAGAVEAAELAVILHEDAVRPLRAVLEAWQGADAS 181

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               V +++GPEGG    E   L     VT L LG  +LRS TA  AA+ L   + G W
Sbjct: 182 GPAEVLLIVGPEGGISPREVTRLCGKGAVTAL-LGHHVLRSSTAGPAAVVLASDVLGRW 239


>gi|237756071|ref|ZP_04584649.1| conserved surface protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691764|gb|EEP60794.1| conserved surface protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 236

 Score =  163 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 15/241 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           L R F+               +Y++   VLR+K+ D I +       +L+K+  + K+  
Sbjct: 3   LPR-FIGEK--EGNYLVLKDQEYNHAVKVLRVKQNDLIEINTFDGNVYLAKVEDISKNQL 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
           I   +E     + +     Y   P + +++D +I+   ++G+  + PVI++ +    Q+ 
Sbjct: 60  IALSIEKIPIKEEEFKITLYQCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDV 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +++ +   +++ +QC       I  P  L  +  N     ++VF ++    +N ++ 
Sbjct: 120 AKKLEKWQRIALNSIKQCKRPFPLIIEKPIKLYNIKSN--DELKVVFYEKE--KQNKIKM 175

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L        V++ IG EGG+  EE E L    F+ PLSLG  IL+ +TA +  +  ++ I
Sbjct: 176 LMN-KTFKTVSVFIGNEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233

Query: 241 C 241
            
Sbjct: 234 L 234


>gi|307297950|ref|ZP_07577754.1| protein of unknown function DUF558 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916036|gb|EFN46419.1| protein of unknown function DUF558 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 228

 Score =  163 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 17/237 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            FV   L    +    G +  +L  V R K GD +   +G+   +   +  +GKS     
Sbjct: 5   FFV---LPEDNRVILDGGETKHL-RVTRAKPGDELTGIDGRGTVYRFLLEELGKSSASGT 60

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDR 126
           V  +   +     +    +  K  RL  +I+K+ E+G+  I    +  + +      + +
Sbjct: 61  VVEREYVERDGKSITVAVAATKWPRLHILIEKATELGVDRIELFNSLRSVSRVDETKLTK 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                  AA+Q     +P I    TL       + +  ++      G    LE    +A 
Sbjct: 121 FNAVAREAAKQSVNPYIPEITVSQTL-----PLEGSYNLLL---EFGGRPLLEVEEKLAC 172

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              + +++GPEGG+  EE + + +    TP+SLG R LR +T+ +  + ++    G 
Sbjct: 173 ERKLRLIVGPEGGFAPEEIKDISTR--CTPVSLGRRTLRVETSVIVVLGIINYRLGR 227


>gi|254526209|ref|ZP_05138261.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537633|gb|EEE40086.1| putative RNA methyltransferaseRsmE family [Prochlorococcus marinus
           str. MIT 9202]
          Length = 257

 Score =  163 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 100/248 (40%), Gaps = 20/248 (8%)

Query: 7   LKRLFVDFPLCIK---TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           L RL +             + S ++ HYL  V+R+K G  I + NG+   W +    V  
Sbjct: 4   LTRLIIAHERIENIKNNNLELSKEEAHYLNKVMRIKNGKEIFITNGEGSLWKA--IKVKN 61

Query: 64  SIRFKVEYQSR---SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
                ++ +      + +   +       K+   + +++   E+G+  I+P+ +    N 
Sbjct: 62  DCLEIIKLKKPYLFQEQEIYLLGIAVVIPKSG-FEDILKMCTEIGIDYIQPLFSERQVNK 120

Query: 121 H----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCG 173
           +      + R  +    A EQ + L  P I     +   LK+ D+  ++   +  +E   
Sbjct: 121 NLNFSRKLLRWNSIIKEAVEQSERLWKPSILNGMDIIKWLKSRDNQERVSISITREEPPY 180

Query: 174 SENSLEKLHAIAHIPNVAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
             N   +           I    IGPEGG+ S+E +  +    +T + L   ILR+ TA+
Sbjct: 181 DLNKWLRKQQEFANKKGGIFWNVIGPEGGWSSKEIDFFNKNN-ITFVKLSDTILRTSTAS 239

Query: 231 VAAMALVQ 238
           + A +++ 
Sbjct: 240 INASSILN 247


>gi|116670781|ref|YP_831714.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter sp. FB24]
 gi|116610890|gb|ABK03614.1| protein of unknown function DUF558 [Arthrobacter sp. FB24]
          Length = 258

 Score =  163 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 16/245 (6%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQS 73
                +     G +  +   V R+  G+++ + +G        ++ V +  +  +     
Sbjct: 15  EQVPGSHFVLQGAEARHAITVKRIAVGESVDIADGAGKRLTGTVAAVDQGELTVECSVLE 74

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRV 127
             +     +  + +  K +R +   + + E+G+ A+ P  +  +      +       + 
Sbjct: 75  TEERPDLRLVLVQALAKGDRDELAAETATELGIDAVIPWQSERSIVRWKGERAAKAHAKW 134

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHA-- 183
           ++   +AA+Q     +P +        L          +   E         LEK H   
Sbjct: 135 QSVVTAAAKQARRAWIPEVRSAVDGAGLQSAVAAADLAIILHEDAVRPLRAVLEKWHDGE 194

Query: 184 ----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                +    + +++GPEGG    E   L S   VT L LG  +LRS TA  AA  L   
Sbjct: 195 GGTPGSGPREILLIVGPEGGISPREVTKLCSAGAVTAL-LGHHVLRSSTAGPAATVLASD 253

Query: 240 ICGDW 244
           I G W
Sbjct: 254 ILGRW 258


>gi|293189695|ref|ZP_06608412.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus
           F0309]
 gi|292821433|gb|EFF80375.1| RNA methyltransferase, RsmE family [Actinomyces odontolyticus
           F0309]
          Length = 262

 Score =  163 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 18/246 (7%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ 72
             L +       G +  + A V R+  G+ + + +G       ++S   K S+   V   
Sbjct: 16  ASLSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEVSGSDKASLSLVVREL 75

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126
            R      +V  + +  K  R +  ++   E+G+  + P  ++                +
Sbjct: 76  VREDAPSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRAIVQWKGPKAEKGRAK 135

Query: 127 VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
                 +AA+Q     +P +        L   + +      + F       ++    L  
Sbjct: 136 WEGVARAAAKQSRRAFVPVVEDVKDSRELASWVASLIGEAGVAFVCHEEAMDSLGAALAR 195

Query: 184 IAH-------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +            +A+++GPEGG  ++E   L        + LG  +LRS TA   A+ L
Sbjct: 196 VQESRADGTLPSRIALIVGPEGGIGADETAQLVDAG-ARAIGLGDNVLRSSTAGAVALTL 254

Query: 237 VQAICG 242
           ++A  G
Sbjct: 255 IRAAAG 260


>gi|332704197|ref|ZP_08424285.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554346|gb|EGJ51390.1| Ribosomal RNA small subunit methyltransferase E [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 248

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 10/238 (4%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +I+S     +   P            +  +L  VLR   G  + LF+G+  + L ++   
Sbjct: 3   RINS----FYCP-PERWNEPFVLDSGETQHLIKVLRTPLGATVRLFDGQGRDGLFRLISA 57

Query: 62  GKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
            +     ++E  +  +  Q+++       K  R D++++K+VE+ +  +       +Q  
Sbjct: 58  DRKGALLELESVTVHERHQTELVVALGWNKAGRRDWLLEKAVELEVAGLWFWQAGRSQGH 117

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 D  +   ++AA+QC    LP +   + L+FL+       +     E  G E  +
Sbjct: 118 VPEQPKDSWQPKLVAAAKQCANPWLPELATLSDLKFLVDASKRYPRRFLLWEAPG-EKLI 176

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           + +  +    NV +++GPEGG    E ETL S  F+T  SLG RILR +TAA+  M L
Sbjct: 177 DPVLDLGGQGNVLMVLGPEGGLEKAEAETLISAGFMTR-SLGSRILRWETAALLGMGL 233


>gi|284990178|ref|YP_003408732.1| hypothetical protein Gobs_1645 [Geodermatophilus obscurus DSM
           43160]
 gi|284063423|gb|ADB74361.1| protein of unknown function DUF558 [Geodermatophilus obscurus DSM
           43160]
          Length = 255

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 13/227 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFK 68
           LF+   L         G +  +   VLR+  G+ + + +G+      +++  G + +R +
Sbjct: 18  LFLLDELPDTADLLVDGAEGRHAVDVLRLTPGERVRVGDGRGTVAAGEVTAAGPQGLRVQ 77

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V  +        ++  + +  K  R    ++ + E+G+  I P                 
Sbjct: 78  VSARHEVPPPALELVLVQALPKGERGPLAVELATELGVDRIVPWAASRCVTRWREDRAAK 137

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKL 181
            + + R    +A++Q     +P +    T   +     D +  +V  ++       +E  
Sbjct: 138 GVAKWRAAARAASKQSRRPRVPEVTDVLTTRQVCGALADVDVALVLHEQARHPLARIE-- 195

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             +    ++A+++GPEGG    E   L++     P+ LGP +LR+ T
Sbjct: 196 --LPTSGSIAVIVGPEGGLSDGEVVALNAAG-ARPVRLGPEVLRTST 239


>gi|294155674|ref|YP_003560058.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145]
 gi|291599900|gb|ADE19396.1| RNA methyltransferase, RsmE family [Mycoplasma crocodyli MP145]
          Length = 228

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 22/239 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F D             +   +L  V+R    + +++FN +   +   +      I 
Sbjct: 1   MNRFFSDHK--EGEYLLLDMNVLKHL-KVIRANNKNFVVVFNEE--FYECCLENDKAKII 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QN 119
            K+        +   V    S IK +R ++++QK++E+G   I P+I+ +T         
Sbjct: 56  SKINEYHEIGYE---VILAASIIKIDRYEWLLQKAIELGATRIVPIISEHTDGSLYKNNK 112

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178
                +R  +   SA+EQ     L  +  P +  E ++K    N +I+  ++     N  
Sbjct: 113 FINKYERFNSIIKSASEQSFRNKLIKLDNPMSFNEAIIKYRYINNKIIAHEKIDLENNDY 172

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +++     +V I +GPEGGY  +E +      +   +SLG RILR+++A++  ++ +
Sbjct: 173 RNINS-----DVIIFVGPEGGYSKKEIDLSVKNDY-KVVSLGRRILRAESASIYLLSQL 225


>gi|87302174|ref|ZP_01084999.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701]
 gi|87283099|gb|EAQ75055.1| hypothetical protein WH5701_08234 [Synechococcus sp. WH 5701]
          Length = 261

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 15/250 (6%)

Query: 3   IHSHLKRLFV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +   L+RL +    L   T    + ++  YL+ VLR   G+   + +G    W + +   
Sbjct: 1   MVRELRRLLIAPERLAAGTTLALAPEESRYLSRVLRYGPGERFAVVDGWGQLWSAVLLD- 59

Query: 62  GKSIRFKV---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
           G   R +    +   R       ++   +  + +  D +++ + E+G+  ++P++  +  
Sbjct: 60  GPQARLEQPLGQPLQRQAAASPWLELAVAIPRLD-FDVVVRMACELGVDRLQPLVAEHGA 118

Query: 119 NTH-YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
               +   R +     A EQC+ L LP +  P      L        ++ +         
Sbjct: 119 RRGSWKASRWQAILREACEQCERLWLPQLLEPLEAITYLGETRAALALLASTREAELPLL 178

Query: 178 LEKLHAIAHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              L      P       VA+ IG EGG+    +           +SLGP ILR+ TAAV
Sbjct: 179 GTALAQAPADPLAGAMDGVALAIGAEGGWSPA-EGAAAQAAGWQAVSLGPHILRTSTAAV 237

Query: 232 AAM-ALVQAI 240
           A + +LVQ  
Sbjct: 238 AGLASLVQWR 247


>gi|308177465|ref|YP_003916871.1| hypothetical protein AARI_16860 [Arthrobacter arilaitensis Re117]
 gi|307744928|emb|CBT75900.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
          Length = 257

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 15/243 (6%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FKVEYQ 72
                    + +G + H+   V R+  G+++ L +GK      +++   K +   KV  +
Sbjct: 14  QEAAPGDILELAGAEAHHAVTVKRVTAGEHLDLLDGKGLRLTVEVTATAKDLLSVKVLRR 73

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
           +        V  + +  K +R    ++  VE+G+ A+RP     +            M +
Sbjct: 74  TEEAISDHPVTLVQALSKGDRDLQAVESGVELGVLAVRPWQADRSIVRWNAAKVDKAMAK 133

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-----CQIVFAD--ETCGSENSLE 179
            R    SA +Q      P +  P   + L K    +       +V  +  E   +E  + 
Sbjct: 134 WRAQVRSAQKQSRRAYEPEVLAPLGSKELAKTIAADVANGALVLVLHEQAENSVAERVIS 193

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            L        V +++GPEGG    E ++         L LG  +LR+ TA  AA+ L++ 
Sbjct: 194 WLPRAHAGQEVIVIVGPEGGISDTELQSFIDAGAHAAL-LGQHVLRASTAGPAALVLIRH 252

Query: 240 ICG 242
           + G
Sbjct: 253 LIG 255


>gi|291287099|ref|YP_003503915.1| hypothetical protein Dacet_1187 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884259|gb|ADD67959.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 16/237 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           +KR+++   L      +  GD +HYL +V+R K GD I +    D      I+ +GK   
Sbjct: 1   MKRIYLAQKLT--DIFELEGDYFHYLKNVVRAKAGDLIGVL-ADDEYAECTITDMGKRNA 57

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYN 123
              VE    ++     ++     +K   +D+ ++K  E+G   I PVI+  + N      
Sbjct: 58  VMSVESCRPAKRYTHKLKVYQCLLKREYMDFAVEKYTELGATEIVPVISERSLNDLKDKT 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           M R    ++ AA Q +   LP I+    +  +    D    ++F  E C         + 
Sbjct: 118 MQRYHDISVKAALQSENEQLPVIHDAVGIADI--QPDMQSNLIF-YERCEERGCFNTTNE 174

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           ++      I+IGPEGG+  EE   L    F TP+     IL+++TA+V     ++ +
Sbjct: 175 MS------IVIGPEGGFTEEEYHMLKDKGF-TPVRPIDNILKAETASVVFTGYIRIL 224


>gi|283851945|ref|ZP_06369221.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B]
 gi|283572669|gb|EFC20653.1| protein of unknown function DUF558 [Desulfovibrio sp. FW1012B]
          Length = 249

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            ++  P         +G + H+   VLR + G+ +  F+G   E L  I  V +  +  +
Sbjct: 9   FYLP-PEAFAAPFALTGGEAHHCVRVLRKRPGEVVRAFDGLGREGLFTIMDVARDRVELE 67

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDR 126
           V   + +   +  +       ++ R D+ ++KSVE+G   I      ++Q        + 
Sbjct: 68  VLSVTEAPRPECRLHLAAGFSRSARRDFFLEKSVELGAAGIVFWQAEHSQGRMPAVPKEA 127

Query: 127 VRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
                ++AA+QC    LP +   P     L        +     E  G    L  L  +A
Sbjct: 128 WTATLVAAAKQCGAARLPALSVVPGGAAGLAALGSGFDRRYLLWEAPGLSRRL-ALADVA 186

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              N   ++GPEGG    E ET  S  F   LSLG R+LR +T
Sbjct: 187 VPGNALFVLGPEGGLTDAEAETCVSAGFA-ALSLGDRVLRWET 228


>gi|218885444|ref|YP_002434765.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218756398|gb|ACL07297.1| protein of unknown function DUF558 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 239

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 9/235 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-I 65
           ++  F+      +      G +  +L  V+R++ GD++ L +G+  E   +++   K+ +
Sbjct: 1   MRTFFLPPERWAE-PYLLEGQEARHLVKVVRVRVGDSVRLLDGRGREGEFRVTDTEKALV 59

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYN 123
           R +    +      S         K  R  ++++K+VE+  G I       +Q+      
Sbjct: 60  RLEPVSITEHPAPASQAVLAIGWGKEVRRGWLMEKAVELEAGGIWLWQAERSQSRVPEET 119

Query: 124 MDRVRTYTISAAEQCDILTLPFIY--PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            +       + A+Q     LP +   P    E    + D   + +  +   G    L   
Sbjct: 120 RESWHAQMEAGAKQSRNPWLPELRTLPGGVAELAEASRDFAKRFILWEGDTGG--VLLGA 177

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             I        ++GPEGG+   E   L +   +  +SLG R+LR +TAA+  + L
Sbjct: 178 GDIGQPGRTLFVVGPEGGFSDREVAALLNSG-MQAVSLGNRVLRWETAAMLCLGL 231


>gi|256832772|ref|YP_003161499.1| hypothetical protein Jden_1548 [Jonesia denitrificans DSM 20603]
 gi|256686303|gb|ACV09196.1| protein of unknown function DUF558 [Jonesia denitrificans DSM
           20603]
          Length = 257

 Score =  162 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 84/253 (33%), Gaps = 31/253 (12%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQ 72
                       G +  +   V R   G+ I + +G        I++V G+ +   V   
Sbjct: 14  AAYREGDTYYLDGVEGRHAGVVQRRSVGEAIDIVDGHGTRLSCTITHVSGEHLDLLVTSV 73

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDR 126
           S     Q  +  + +  K +R +  I+ + E+G+  + P      ++         +  R
Sbjct: 74  SHESCGQYRLTLVQALAKGDRDELAIEAATEVGVDRVIPWQADRSIVVWRGARAAKSHAR 133

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----NWDHNCQIVFADETC--------- 172
                 SA +Q     LP +  P T + L+              V  +            
Sbjct: 134 WVATVRSAMKQARRARLPMVEQPVTSQQLVDVIAETTQTGGVVYVLHESATTALTSQPRP 193

Query: 173 -GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
            G E        +          GPEGG    E E   +      + LGP +LR+ TA  
Sbjct: 194 PGGEELAPVDVVVVV--------GPEGGISDSELEKFTAAG-AQAVLLGPHVLRTSTAGP 244

Query: 232 AAMALVQAICGDW 244
            A+AL+ A  G W
Sbjct: 245 VALALLSASTGRW 257


>gi|320533957|ref|ZP_08034521.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133834|gb|EFW26218.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 270

 Score =  162 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 96/247 (38%), Gaps = 21/247 (8%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQ 72
             T    +G +  +   V R++  + + L +G     L +++  G       +  ++  +
Sbjct: 24  AGTVLMLTGPEARHAVTVKRLRAQERVDLVDGAGLRLLCEVTGAGVGGAKDCLAVRILER 83

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
                    +  + +  K  R +  ++ + E+G G + P  +                 R
Sbjct: 84  VEEPAPLLRLTLVQALAKGGRDEQAVETATEVGAGLVLPWQSERCVSVWQGVKQAKGRQR 143

Query: 127 VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKN--WDHNCQIVFADETCGSENSLE-- 179
            +   + AA+Q     +P +        L   ++    D    +V  +E     ++    
Sbjct: 144 WQATALQAAKQARRARMPEVEEVRDTRRLADWVEQTVRDGGVVLVLHEEASTPISTAMES 203

Query: 180 -KLHAIAHIPNV-AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            +L A    P V A+++GPEGG   EE   L +   +T + LGP ++R+ +A   A+A++
Sbjct: 204 VRLPAPGEAPLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVL 262

Query: 238 QAICGDW 244
               G W
Sbjct: 263 AHASGLW 269


>gi|41408259|ref|NP_961095.1| hypothetical protein MAP2161c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396614|gb|AAS04478.1| hypothetical protein MAP_2161c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 253

 Score =  162 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            + D      +     GD+  + A V R++ G+ ++L +   G    ++ + G+  +R +
Sbjct: 6   FYTDELPDAGSLAVLGGDEGFHAATVRRIRPGERLVLGDRAGGLARCEVEHAGRDGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V  +         V  + +  K+ R +  ++ + E G          R V   +      
Sbjct: 66  VLERWTVAPPNPPVTVVQALPKSERSELAVELATEAGADGFLAWQAARCVANWHGPRVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179
            + R R    +AA Q     +P +    +   L   +++      +V A     ++   +
Sbjct: 126 GLRRWRAVAKAAARQSRRPHIPTVDGVLSTASLTSRIRDEVAAGAVVLALHESATDRLTD 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +A   ++ ++IGPEGG   +E   L     ++ + LGP++LR+ T
Sbjct: 186 V--PVAQAKSLFLVIGPEGGIADDELAALRQAGALS-VRLGPQVLRTST 231


>gi|162455373|ref|YP_001617740.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56']
 gi|161165955|emb|CAN97260.1| hypothetical protein sce7091 [Sorangium cellulosum 'So ce 56']
          Length = 252

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
                +   Y+  V R++EGD  ++F+ +   E  + +  +G+          R    + 
Sbjct: 19  IALPPEAASYVVRVHRLREGDRFVVFDPELGVEAEATLESIGRRGAEARIDAPRPAALRP 78

Query: 81  --DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--NTHYNMDRVRTYTISAAE 136
              V +I +  K +++D +++ + E+G   I P I+  +          R R   I AA 
Sbjct: 79  GRRVTWIQAVGKGDKMDAVVRDATELGATRIIPAISARSVARPAEEKSQRWRRIAIEAAR 138

Query: 137 QCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           QC     P +  P +L   L             +    +         +L A++     A
Sbjct: 139 QCGRGDAPRVEAPMSLAAALAEAGAAPSTEGGALGMCLDPYAETPLGARLAALSPGMEAA 198

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +GPEGG+  EE     +L F   + LG   LR++T   AA+  +
Sbjct: 199 FAVGPEGGFTPEELGMCAALGFER-VRLGALTLRTETVCAAALGAL 243


>gi|294790827|ref|ZP_06755985.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304]
 gi|294458724|gb|EFG27077.1| RNA methyltransferase, RsmE family [Scardovia inopinata F0304]
          Length = 250

 Score =  161 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 92/238 (38%), Gaps = 14/238 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
                 +       +    +R+ + D + + +G      +++    +    ++  +    
Sbjct: 17  SANQLFQLPPSARQHAFKAMRLSKDDLLEISDGAGNRLRAQVVN-PQEGTVRIVSEQYEP 75

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
                +  + +  K++R +  I+ + E+G+  I P     +            + + +  
Sbjct: 76  QPSIKLGLVQALAKSDRDEQAIEMATEIGVDFILPWQADRSIVQWKGPKAARGLRKWQDQ 135

Query: 131 TISAAEQCDILTLPFIYPPTT---LEFLL-KNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            I A EQ     +P + P      LE  + K  D   Q++   +    + S  ++     
Sbjct: 136 LIMATEQSRRSRIPRLNPLVASSGLEEWIRKEVDAGSQVLLLHQDA--DLSWSQVSLPET 193

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            P +++++GPEGG   +E E   +     P+ LG  ILR+ +A   A+AL+    G +
Sbjct: 194 SPMISVIVGPEGGISDKEVEAFAAAG-AKPVLLGHTILRASSAGPVALALLSGALGRF 250


>gi|188997402|ref|YP_001931653.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932469|gb|ACD67099.1| protein of unknown function DUF558 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 236

 Score =  161 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 15/241 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           L R F+               +Y++   VLR+K+ D I +       +L+K+  V K+  
Sbjct: 3   LPR-FIGEK--EGDYLVLKDQEYNHAVKVLRIKQNDLIEINTLDGNVYLAKVEDVTKNQL 59

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNT 120
           I   +E     + +     Y   P + +++D +I+   ++G+  + PVI++ +    Q+ 
Sbjct: 60  IALPIEKIPVKEEEFKITLYQCMPNQLSKIDEIIEPLSQLGVYKLIPVISKNSAVKEQDV 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              +++ +   +++ +QC       I  P  L  +    + + ++VF ++    +N ++ 
Sbjct: 120 TKKLEKWQRIALNSIKQCKRPFPLIIEKPIKLYNI--KCNDDLKVVFYEKEQ--QNKVKM 175

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L    +    ++ IG EGG+  EE E L    F+ PLSLG  IL+ +TA +  +  ++ I
Sbjct: 176 LMN-NNFKTASVFIGNEGGFKEEEIEYLKKEGFI-PLSLGDYILKMETAIIIGICQIKCI 233

Query: 241 C 241
            
Sbjct: 234 L 234


>gi|118618898|ref|YP_907230.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium ulcerans
           Agy99]
 gi|118571008|gb|ABL05759.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 253

 Score =  161 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +VD            GD+  + A V R++ G+ ++L +G        + +  +  +  +
Sbjct: 6   FYVDTVPEAGELAALDGDEGFHAATVRRIRPGEQLVLGDGAGELARCVVEHAARDGLTAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +      +  V  + +  K+ R +  ++ + E G  A                    
Sbjct: 66  VLQRWSVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLE 179
            + R R+   SAA Q     +P +    +   L++      Q   +V A     ++  +E
Sbjct: 126 GLRRWRSAVRSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVE 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              A+A   ++ +++GPEGG   EE + L     V+ + LGP +LR+ T
Sbjct: 186 T--AVAQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTST 231


>gi|271963819|ref|YP_003338015.1| hypothetical protein Sros_2291 [Streptosporangium roseum DSM 43021]
 gi|270506994|gb|ACZ85272.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 243

 Score =  161 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 31/252 (12%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
              +     + +    G +  + A V R++ G+ + L +G        +   G+ S+R +
Sbjct: 6   FLAEPADLARDEFTFGGPEGRHAAAVRRLRAGERLDLTDGAGTVAECVVRDAGRDSLRVE 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V  +      +  +  +    K +R +  ++   E G+  I P            +    
Sbjct: 66  VLRRYEVAAPRPRLVVVQGLPKGDRGELAVEMMTEAGVDVIVPWAAARCVTQWKGERAVK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           +++R R+    A +Q     LP +  P T   ++         V   E   S  S  +L 
Sbjct: 126 SLNRWRSTAREAGKQSRRFHLPEVTEPATTAGVVALLSAAALGVVLHEEAASPLSTLELP 185

Query: 183 AIAHIPNVAILIGPEGGY----------HSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
                          G              EE         V P  LGP +LR+ TA VA
Sbjct: 186 GA-------------GDIVVVVGPEGGVADEEIGAFREAGAV-PALLGPTVLRTSTAGVA 231

Query: 233 AMALVQAICGDW 244
           A A++Q   G W
Sbjct: 232 AAAVLQTRTGRW 243


>gi|183983662|ref|YP_001851953.1| hypothetical protein MMAR_3682 [Mycobacterium marinum M]
 gi|183176988|gb|ACC42098.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 253

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +VD            GD+  + A V R++ G+ ++L +G        + +  +  +  +
Sbjct: 6   FYVDTVPEAGELAALDGDEGFHAATVRRIRPGEQLVLGDGAGELARCVVEHAARDGLTAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +      +  V  + +  K+ R +  ++ + E G  A                    
Sbjct: 66  VLQRWSVAPVRPAVTVVQALPKSERSELAVELATEAGADAFLAWQAARCVANWGGARADK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLE 179
            + R R+   SAA Q     +P +    +   L++      Q   +V A     ++  ++
Sbjct: 126 GLRRWRSAARSAARQSRRAHIPPVEGVLSTAALIRRITAEAQAGAMVLALHESATDRLVD 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
              A+A   ++ +++GPEGG   EE + L     V+ + LGP +LR+ T
Sbjct: 186 T--AVAQAKSLVLVVGPEGGIAPEEMDALAGAGAVS-VRLGPTVLRTST 231


>gi|154509292|ref|ZP_02044934.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798926|gb|EDN81346.1| hypothetical protein ACTODO_01817 [Actinomyces odontolyticus ATCC
           17982]
          Length = 262

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 18/246 (7%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQ 72
             L +       G +  + A V R+  G+ + + +G       ++S   K S+   V   
Sbjct: 16  ASLSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEVSGSDKASLSLVVREL 75

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQNTHYNMDR 126
            R      +V  + +  K  R +  ++   E+G+  + P  ++                +
Sbjct: 76  VREDASSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRAIVLWKGPKAEKGRAK 135

Query: 127 VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
                 +AA+Q     +P +        L   + +      + F       ++    L  
Sbjct: 136 WEGVARAAAKQSRRAFVPVVEDVKDSRELASWVASLIVEAGVAFVCHEEAMDSLGAALAR 195

Query: 184 IAH-------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +            +A+++GPEGG  +EE   L        + LG  +LRS TA   A+ L
Sbjct: 196 VQESRADGTLPARIALIVGPEGGIGAEETAQLVDAG-ARAIGLGDNVLRSSTAGAVALTL 254

Query: 237 VQAICG 242
           ++A  G
Sbjct: 255 IRAAAG 260


>gi|124023129|ref|YP_001017436.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963415|gb|ABM78171.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. MIT 9303]
          Length = 258

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 13/248 (5%)

Query: 4   HSHLKRLFVD-----FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI 58
            + L+RL V+                  D+ HYL  VLR++ G  + + +G    W + +
Sbjct: 1   MAELRRLLVESQRFEAITASDHLLSLKQDEVHYLRRVLRLRNGQAVAVVDGVGHFWEAHL 60

Query: 59  SYVGKSIRFKVEYQSRS-QTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRY 116
              G  ++      S   Q  +   Q   + +   R  + +++ S E+G+  I+P+ +  
Sbjct: 61  -QAGDFLKLDTSPSSPCLQQPRHRQQLALAVVIPKRGFEEVLRMSCELGVNRIQPLRSDR 119

Query: 117 T-QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                     R +     A EQ + L  P + P      L K+   +     A       
Sbjct: 120 CTPQAEDRPLRWKVILREAVEQSEQLWQPELLPIAEASSLWKSAPVHAVFALATTRRQGL 179

Query: 176 NSLEKLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
             L+ L       I  V + IGPEGG+   E+    +  +V P++LG  ILR+ TAAVAA
Sbjct: 180 IDLQLLMEGLTPEINQVTVAIGPEGGWSPIEECAAEAAGWV-PVALGDSILRTCTAAVAA 238

Query: 234 M-ALVQAI 240
              +V + 
Sbjct: 239 AQTMVSSR 246


>gi|330469600|ref|YP_004407343.1| hypothetical protein VAB18032_28361 [Verrucosispora maris
           AB-18-032]
 gi|328812571|gb|AEB46743.1| hypothetical protein VAB18032_28361 [Verrucosispora maris
           AB-18-032]
          Length = 244

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 15/229 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
           LF+   L         G + H+ A V R++ G+ +LL +G+ G   + +S VG+ ++  +
Sbjct: 5   LFLVESLPTADTMVLDGPEGHHAATVQRLRVGEELLLGDGRGGTAAAVVSAVGRGTLDIE 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
           +  +         +  +    K +R +  +Q   E G+  I P                 
Sbjct: 65  ITSRGYVDAANPRLVVVQGIAKGDRGELAVQAMTEAGVDEIVPWAAGRSVAQWRGDRGVR 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWD-HNCQIVFADETCGSENSLE 179
             D+       AA+Q     LP +   P      + +         V  +E      ++E
Sbjct: 125 ARDKWVATAREAAKQARRAWLPVVAGAPDEPTASVARRISGAAAGYVLHEEATDRLTTVE 184

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +     + +++GPEGG    E  T        P+ LGP +LR+ T
Sbjct: 185 ----LPDQGEIVLVVGPEGGITPAELATFQQAG-AHPVRLGPSVLRTST 228


>gi|237785905|ref|YP_002906610.1| hypothetical protein ckrop_1323 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758817|gb|ACR18067.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 299

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 11/237 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           +      +G +  +   V R+  GD+++L NG+       +       R +        T
Sbjct: 60  VGDAVLLTGSEGRHAVTVKRLVAGDSLVLVNGEGDWLRCTVESTPSKTRLRATVLEAGHT 119

Query: 78  KQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTY 130
                 +  + +  K++R +  +  + + G  AI P      I R+         +    
Sbjct: 120 PMSTPPITVVQALPKSDRSELAVDLACQAGADAIVPWSASRSIARWKGKEKKAGGKWADT 179

Query: 131 TISAAEQCDILTLPFIYPPTTLEF---LLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
            +++++Q     LP I   +T +     ++    +  +    E   S         +   
Sbjct: 180 AVASSKQSRRARLPRIAALSTTDDVVNAIEQVTQSGGLALVLEESESVRVTSLAENLRQA 239

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             + +++GPEGG   +E +        T + LGP +LR+ TAA  A+  V  +CG W
Sbjct: 240 SQIMLIVGPEGGIAPDEHDAFVRAG-ATSVVLGPEVLRTATAASVALGAVNVLCGRW 295


>gi|254774749|ref|ZP_05216265.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 253

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            + D            GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +
Sbjct: 6   FYADALPETGALAVLGGDEGFHAASVRRIRPGEQLVLGDGAGGLAHCEVEHAGRDGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V  +         V  + +  K+ R +  I+ + E G          R V   +      
Sbjct: 66  VLKRWSVAPGTPPVTVVQALPKSARSELAIELATEAGADGFLAWQAARCVANWHGARVEK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179
            + R R    SAA Q     +P +    +   L   +++       V A     +E   +
Sbjct: 126 GLRRWRAVARSAARQSRRAHIPLVDGVLSTPALTSRIRDEVAGGATVLALHESATERLAD 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +A   +V +++GPEGG   +E   L      T + LGP++LR+ T
Sbjct: 186 A--DLAGATSVLLVVGPEGGIADDEMAALSDAG-ATAVRLGPQVLRTST 231


>gi|32490916|ref|NP_871170.1| hypothetical protein WGLp167 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166122|dbj|BAC24313.1| yggJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 205

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 14/209 (6%)

Query: 44  ILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNR--LDYMIQKS 101
           +L+FNGK+ E+L KI        +        +  +S ++     +  N+  +D+++QKS
Sbjct: 3   VLIFNGKEKEFLGKILKYKNKNTYIFLMHQIHKYVESTLKINLGQVLCNKKSMDFLVQKS 62

Query: 102 VEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155
           VE+G+  + P+ +  +      +N +  +DR     I +++QC    L  I  P ++   
Sbjct: 63  VELGIHTLTPLFSSRSNEFLNKKNLNKIIDRWEKIIIQSSQQCGRNFLLKINDPISIYKW 122

Query: 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVT 215
                 + +I     +      + +      I N+ +LIGPEGG   EE   +    F  
Sbjct: 123 CDTKSTSFKIYADPYSEKKIKEINQ-----KIKNINLLIGPEGGLSKEEVFHVEKNNFNK 177

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +  GPRILR++T+ ++ ++++Q   GD+
Sbjct: 178 -IKFGPRILRTETSVISIVSILQMYFGDF 205


>gi|227488406|ref|ZP_03918722.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543018|ref|ZP_03973067.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091620|gb|EEI26932.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181240|gb|EEI62212.1| protein of hypothetical function DUF558 [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 240

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 11/209 (5%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIR-FKVEYQSRSQTKQ 79
              SG +  +   V R+  G+ ++L +G  G  +  ++   GK +    V  +       
Sbjct: 17  FTLSGPEGRHAVTVKRIGPGEIVMLADGHGGRSVGTVTATQGKDVLHVDVTSREEVPPPN 76

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQ 137
             V  I +  K+ R +  +    + G   I P        +       +     ++AA+Q
Sbjct: 77  PQVTVIQALPKSERQELTVDLLTQGGADVIVPWEAERCIAKWQPKKAKKWENAAVAAAKQ 136

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
                LP I  P  L+  L   D    +V  +E       ++    ++ +  +A++IGPE
Sbjct: 137 SRRARLPLITKPNALDEALDGVD--LVLVLHEEASVPLAEVD----LSQVRRIALVIGPE 190

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           GG    E E   +     P+ LGP +LR+
Sbjct: 191 GGLSPAEVERFRAAG-ARPVLLGPEVLRT 218


>gi|50365119|ref|YP_053544.1| hypothetical protein Mfl303 [Mesoplasma florum L1]
 gi|50363675|gb|AAT75660.1| unknown protein [Mesoplasma florum L1]
          Length = 238

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 103/242 (42%), Gaps = 14/242 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY--VGKS 64
           + R FV+           +    H++ +V+++K  + I     +   + +KI    +  +
Sbjct: 1   MFRYFVEIKKDNNFFIINNN-DVHHIKNVVKLKNDEIIECV-YEKEVYQTKIIDLTIENN 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------TQ 118
           +  ++  +  +         I   ++  + DY++QKS E+G+  I PVI +        +
Sbjct: 59  VIVEIINKVETTISNVKKVLIAGVLREQKWDYLLQKSTELGVDEIIPVIFKRNVVKIDEK 118

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                + R +    +AA+Q    T+P +    T    LKN   +  +V  ++    E   
Sbjct: 119 KIDQKLQRWQAICDTAAKQAKRTTIPVVNNLITNLKDLKNNLCDLNLVAWEKEKNIE--- 175

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            K +      +++ +IG EGG    E + LH + F   +SLG  ILR++TA    ++ + 
Sbjct: 176 LKTYLTQDFNSISFIIGCEGGIEVSEIKILHEIGF-KNVSLGTNILRAETAPTYVLSSLI 234

Query: 239 AI 240
             
Sbjct: 235 YE 236


>gi|218661479|ref|ZP_03517409.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli IE4771]
          Length = 151

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 1/132 (0%)

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           +DY++QK+VEMG G ++PV+T++ Q    N+D++R   + AAEQC +L +P +  P  L 
Sbjct: 1   MDYLVQKAVEMGAGLLQPVMTQHVQGKITNLDKLRANVVEAAEQCGVLGIPAVAEPVKLS 60

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
            LL  W    +I++ DE    +N L  L AI    ++A+L+GPEGG+  EE+  L SL F
Sbjct: 61  DLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-RHLALLVGPEGGFSEEERARLRSLDF 119

Query: 214 VTPLSLGPRILR 225
           VT + LGPRILR
Sbjct: 120 VTAIPLGPRILR 131


>gi|94986461|ref|YP_594394.1| 16S ribosomal RNA methyltransferase RsmE [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730710|emb|CAJ54072.1| uncharacterized protein conserved in bacteria [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 260

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQS 80
              +  + H+L HVLR++ G  I + +G+  E L  +   +   +               
Sbjct: 33  YILNKKESHHLLHVLRIQIGTEIHVLDGRGREGLFSVKEVIKDRVSLSYINDWMHPEPTR 92

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN--THYNMDRVRTYTISAAEQC 138
            V       K  R  ++ +K+ E+   AI       +Q   +    +  +   I+ A+QC
Sbjct: 93  KVVLAAGWTKAARRGWLFEKAAELEAWAIWFWKAERSQFPLSEAKKESWQGQIIAGAKQC 152

Query: 139 DILTLPFIY-PPTTLEFLLKNWDH---NCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           +    P +   P  +E L+ N D    + + V  + TCG    L           + +L 
Sbjct: 153 NNPWFPSLQLFPNGIEELIYNVDTIGCDFRHVLVENTCGPAQPLTLDMLKQTGLTICVL- 211

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           GPEGG+  +E   L    F++ L+LG R+LR +TAA+  + L
Sbjct: 212 GPEGGFTHKEILKLKEASFLS-LTLGDRVLRWETAAILCLGL 252


>gi|332298871|ref|YP_004440793.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
 gi|332181974|gb|AEE17662.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
          Length = 286

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 100/274 (36%), Gaps = 40/274 (14%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++         + +   +G  + YL +VLR++  D + +          +++ V  +  
Sbjct: 1   MRQFIAPSEPDPRGRITVTGKDFRYLRNVLRLQPDDTLDVRLSGGELCRMRVAEVKAAGS 60

Query: 67  FKVEYQSRSQTK----------------------QSDVQYIFSPIKTNRLDYMIQKSVEM 104
             V  +  ++++                      ++ +       K  ++D +++++ E 
Sbjct: 61  ALVLERCGARSEGARATAETGVPAGAIEGADGGVRAPLWLFQFMPKAQKMDLIVRQAAET 120

Query: 105 GMGAIRPVITRYTQNTH--YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN 162
           G+  I PV    +Q +      +R +     A +Q        +  P  L+  L+ W   
Sbjct: 121 GVAVIVPVRGARSQKSDCIERRERWQRIVREARQQSGSPVETTVAEPLDLDGALRLWSGR 180

Query: 163 -----CQIVFADETCGSEN----------SLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
                C +   +E+ G             S       A     A+ +G EGG   +E + 
Sbjct: 181 CGARPCAVALYEESAGCLPLHSCAARMCASGTSEKPTAPCTAAALAVGCEGGLSPDEIDV 240

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           L    F  P+     ILR++TAA+  +A +Q I 
Sbjct: 241 LQRAGFA-PVHFDTNILRTETAALYGIAALQTIL 273


>gi|294670651|ref|ZP_06735527.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307621|gb|EFE48864.1| hypothetical protein NEIELOOT_02374 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 143

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 14/149 (9%)

Query: 103 EMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156
           E+G+  I PV +  +      +     + R +   ISA EQ    T+P + P       L
Sbjct: 2   ELGVNEIIPVESARSVVKLSGERAEKRVSRWQEIVISACEQSGRNTVPAVRPLLPFRRAL 61

Query: 157 KNW-DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVT 215
           +N  D   +++       S N   +L+++    +V  ++GPEGG+  EE+       F  
Sbjct: 62  QNLPDAEAKLLM------SLNRSCRLNSLPPPRSVVFMVGPEGGWTEEEERFAQEAGF-Q 114

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDW 244
            +SLG R+LR++T A+AA+A +Q + GD+
Sbjct: 115 AVSLGRRVLRTETTALAAIAAMQTLWGDF 143


>gi|297160570|gb|ADI10282.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--R 74
            +  +    G +  +   V R++ G+ ++L +G        ++ V    R  VE      
Sbjct: 15  AVGARLALEGPEGRHAVSVRRLRVGEPVVLTDGAGTGAFGAVAAVEGKDRLLVEVAEVRH 74

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
                  +  + +  K +R +  ++   E G+ AI P            +     + + R
Sbjct: 75  EAPPSPRITVVQALPKGDRGELAVETMTETGVDAIVPWAAARCVTQWKGERGLKALGKWR 134

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                A +Q   L  P +    T   + +    +       E      +   L A     
Sbjct: 135 ATAREAGKQSRRLLFPEVMDAMTTRQVARLLAESDFAAVLHEEGAEPLATAPLPA---EG 191

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +V +++GPEGG   EE           P  LGP +LR+
Sbjct: 192 SVVLVVGPEGGVSPEELAAFAEAG-ARPYRLGPTVLRT 228


>gi|281200678|gb|EFA74896.1| hypothetical protein PPL_11930 [Polysphondylium pallidum PN500]
          Length = 275

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 117/252 (46%), Gaps = 30/252 (11%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L+R FV+  PL ++   +  G Q+ +L   LR+KEG  + LF+G +   ++ I  +GK+ 
Sbjct: 4   LRRFFVENIPLMLRGSVRLDGSQHLHLKKSLRLKEGQEVELFDG-NQSVIAVIDSIGKNH 62

Query: 66  RFKVEYQSRSQTKQSDVQYIF--------SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
              +  +    T  +D Q+ F        S  K +R D+M++K  E+ + ++  + T Y+
Sbjct: 63  SDLIISKINESTSSADNQHTFDSRIDIASSLPKASRGDWMVEKLTELDVRSLYLIETDYS 122

Query: 118 QNTHY------NMDRVRTYTISAAEQCDIL-----TLPFIYPPT--TLEFLLKNWDHNCQ 164
           +++          DR +   I AA+Q  I+     T   +  PT   L  L++ +  +  
Sbjct: 123 KSSKSSNITDNKFDRYQRIIIEAAKQSKIVKDNLWTHIIVGHPTGQPLPQLIEKFKTDY- 181

Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
            +  +    + NS+E L      P + +++G EGG+   E   L  L  V P + G  IL
Sbjct: 182 -IKNNNDNNNNNSVESLSIPKVSPRLLVMVGSEGGFTENEINKLSKLSNVYPTNFGNSIL 240

Query: 225 RSDT-----AAV 231
           R +T     A +
Sbjct: 241 RMETFSLLSAGI 252


>gi|323452130|gb|EGB08005.1| hypothetical protein AURANDRAFT_14390 [Aureococcus anophagefferens]
          Length = 223

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 10/213 (4%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQS 80
            S  Q+ Y+A V+R++EGD +  F    GEW   +    +    +   V+ +     +  
Sbjct: 1   LSPAQHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDETP 60

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQC 138
            +   F+P++  R   +I+K+VE+G   + PV T   +          +    + AAEQC
Sbjct: 61  RLDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQC 120

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG-SENSLEKLHAIAHIPNVAILIGPE 197
           + L +P +     L   L +       V A+   G S   L+ L         A+L+GPE
Sbjct: 121 ERLRVPVVEDVVDLASPLGDLP---LFVCAERADGASPRLLDALLGAELGDGAALLVGPE 177

Query: 198 GGYHSEEKETLHS-LPFVTPLSLGPRILRSDTA 229
           GG+   +   + +  P  T +SLG  ILR++TA
Sbjct: 178 GGFSDADLAAVRASNPDATFVSLGAGILRAETA 210


>gi|157413088|ref|YP_001483954.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387663|gb|ABV50368.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9215]
          Length = 257

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 15/238 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR--SQ 76
               + + ++ HYL  V+R+K G  I + NG+   W +    V       ++ +     Q
Sbjct: 19  NNNIELTNEEAHYLNKVMRIKNGKEIFIANGEGSLWKA--IKVNNDCLEIIQLKKPYLFQ 76

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----YNMDRVRTYTI 132
            K+  +  I   I  +  + +++   E+G+  I+P+ +    N +      + R      
Sbjct: 77  EKEIYLLGIAVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNAIIK 136

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSENSLEKLHAIAHIPN 189
            A EQ + L  P+I     +   LK+ D+   +   +  +      N   + H       
Sbjct: 137 EAVEQSERLWKPYILNGMDIIEWLKSRDNQESVSISITRENPRYYLNQWLREHQEFINKK 196

Query: 190 VAIL---IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             I    IGPEGG+ S+E +  +     T + L   ILR+ TA++ A +++     D+
Sbjct: 197 GGIFWNVIGPEGGWSSKEIDFFNKNNN-TFVKLSETILRTSTASINASSILNQWRIDF 253


>gi|297194445|ref|ZP_06911843.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718746|gb|EDY62654.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 248

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 12/218 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS--R 74
                    G +  +   V R++ G++I+L +G        +       R  VE +   +
Sbjct: 16  APGATVTLDGPEGRHAVSVRRLQPGEDIVLTDGGGRGASGTVVTTEGKDRLTVEVRECRK 75

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHYNMDRVR 128
               +  +  + +  K +R +  ++   E G+ A+ P            +    ++ + R
Sbjct: 76  EPQPEPRITVVQALPKGDRGELAVETMTETGVDAVVPWSAARCITQWRGERGAKSLAKWR 135

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
                A +Q   L  P +    T + +              E             +    
Sbjct: 136 ATAREAGKQSRRLRFPEVSEAATTKQVAALLADADFAAVLHEEGA---LPLATAELPTAG 192

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           ++ +++GPEGG   EE           P  LG  +LR+
Sbjct: 193 SIVLVVGPEGGVSPEELALFAEAG-ARPYRLGRSVLRT 229


>gi|170289238|ref|YP_001739476.1| hypothetical protein TRQ2_1449 [Thermotoga sp. RQ2]
 gi|170176741|gb|ACB09793.1| protein of unknown function DUF558 [Thermotoga sp. RQ2]
          Length = 222

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 20/233 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +  LF         +      + H++  V+R+KEGD I   +GK   +   +  + K   
Sbjct: 1   MPHLFYGT--AQNGEVIFDEREAHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKTA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                ++  + K+   +        +  R  ++I+K VE+G+  I       +Q    ++
Sbjct: 58  AARIVKAEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISL 116

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           D+ +     AA+QC     P +         L+  + +  ++  D    S+N L+     
Sbjct: 117 DKAKIVVREAAKQCKRYLFPKVS-------FLEKLEFSGNVITLD-LDASQNLLDANLE- 167

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               ++ +++GPEGG+  +E+E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 168 ---GSITVVVGPEGGFSEKERELLRSS--TTIVSLGKKILRFETAAILTVGYI 215


>gi|309811068|ref|ZP_07704866.1| RNA methyltransferase, RsmE family [Dermacoccus sp. Ellin185]
 gi|308435032|gb|EFP58866.1| RNA methyltransferase, RsmE family [Dermacoccus sp. Ellin185]
          Length = 252

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 86/238 (36%), Gaps = 22/238 (9%)

Query: 10  LFVDF-----PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK- 63
            FV        +        +GD+  +   V RM  G+ ILL +G      + ++   K 
Sbjct: 6   YFVAPGALSDDIPPGAPVVLAGDEGRHAVTVKRMGVGEQILLADGHGLVAHAVVAETTKG 65

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            +   V   +R          + +  K +R    ++ + E+G+ A+ P     +      
Sbjct: 66  ELTAHVREVTRETPPAVTFTLVQALAKGDRDLQAVEAATELGVDAVVPWQAERSIVQWRG 125

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETC 172
           +       +      +A +Q    T P I    T     +       +    +V  ++  
Sbjct: 126 ERAEKARRKWVAQAEAATKQSRRATPPRISDLVTKNAAAQAISATVAEGGLALVLHEDAE 185

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
            S   +E    +    +V +++GPEGG    E +   +    TP+ +G  +LRS +A 
Sbjct: 186 ASLAQVE----LPSAGDVMLVVGPEGGITPAELDAFVAAG-ATPVRMGATVLRSSSAG 238


>gi|145296244|ref|YP_001139065.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           glutamicum R]
 gi|140846164|dbj|BAF55163.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 16/243 (6%)

Query: 11  FV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67
           F+ D         + +G +  +   V R++ G+ I L +G+       ++ +     +  
Sbjct: 6   FISDSAAGPGETIELAGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDHLNA 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122
            V+           V  + +  K+ R +  I    + G   I                  
Sbjct: 66  VVDLVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKL 181
           ++ + +    +AA+Q    T+P I      E + K  D  +  I+  +E   +   LE  
Sbjct: 126 SLAKWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE-- 183

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                  NV ++IGPEGG    E          T + LGP +LR+ +A + A+A +  + 
Sbjct: 184 ----FSGNVVVIIGPEGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLS 238

Query: 242 GDW 244
             W
Sbjct: 239 DRW 241


>gi|50842401|ref|YP_055628.1| hypothetical protein PPA0917 [Propionibacterium acnes KPA171202]
 gi|282854139|ref|ZP_06263476.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139]
 gi|50840003|gb|AAT82670.1| conserved protein DUF558 [Propionibacterium acnes KPA171202]
 gi|282583592|gb|EFB88972.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J139]
 gi|314923116|gb|EFS86947.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL001PA1]
 gi|314966883|gb|EFT10982.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL082PA2]
 gi|314981227|gb|EFT25321.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL110PA3]
 gi|315091796|gb|EFT63772.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL110PA4]
 gi|315093196|gb|EFT65172.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL060PA1]
 gi|315103299|gb|EFT75275.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL050PA2]
 gi|315105505|gb|EFT77481.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL030PA1]
 gi|327327708|gb|EGE69484.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL103PA1]
          Length = 246

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75
              +  + +G + H+   V R++ G+++L+ +G+        I     S+  +      +
Sbjct: 14  VPGSVVEITGAEGHHAGSVRRIRVGESVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129
                    + +  K++R +  +    EMG+  I      R ++          + R + 
Sbjct: 74  PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               A +Q     +P +    T E + +  +     V  +    SE  +     +     
Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLHE--SASEPLVH--QELPASGE 189

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V  ++GPEGG  S+E E   +     P+++   +LR+ TA V  +A ++A
Sbjct: 190 VIFIVGPEGGITSQEVEAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238


>gi|19553487|ref|NP_601489.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391130|ref|YP_226532.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           glutamicum ATCC 13032]
 gi|21325060|dbj|BAB99682.1| Uncharacterized BCR [Corynebacterium glutamicum ATCC 13032]
 gi|41326469|emb|CAF20631.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
           13032]
          Length = 241

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 15/240 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRFKVE 70
           D         + +G +  +   V R++ G+ I L +G+       ++ +     +   V+
Sbjct: 9   DSAAGPGETIELAGPEGRHAVTVKRIQVGEKISLIDGRGTARTCTVTALQGKDRLNAVVD 68

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMD 125
                      V  + +  K+ R +  I    + G   I                  ++ 
Sbjct: 69  LVEEIPAPNPQVTIVQAIPKSERSELTIDLLTQAGADRIVAWQASRCVAKWGGKEAKSLA 128

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-NCQIVFADETCGSENSLEKLHAI 184
           + +    +AA+Q    T+P I      E + K  D  +  I+  +E   +   LE     
Sbjct: 129 KWQVAAEAAAKQSRRATIPEILGVVGEEGVEKLIDESDLAIILHEEATAAIRELE----- 183

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               NV ++IGPEGG    E          T + LGP +LR+ +A + A+A +  +   W
Sbjct: 184 -FSGNVVVIIGPEGGVAPSEISRFVDAGAHT-VKLGPEVLRTASAGMVALAAIGVLSDRW 241


>gi|326773557|ref|ZP_08232840.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505]
 gi|326636787|gb|EGE37690.1| RNA methyltransferase, RsmE family [Actinomyces viscosus C505]
          Length = 270

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 95/246 (38%), Gaps = 21/246 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQS 73
            T    +G +  +   V R++  + + L +G     + +++  G       +  +V  + 
Sbjct: 25  GTVLMLTGPEARHAVTVKRLRAQERVDLVDGAGLRLVCEVTGAGVGGAKDRLAVRVLERV 84

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRV 127
                   +  + +  K  R +  ++ + E+G+G + P  +                 R 
Sbjct: 85  EEPEPSLRLTLVQALAKGGRDEQAVETATEVGVGLVLPWQSERCVSVWQGAKQAKGRQRW 144

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGSENSLE--- 179
           +   + AA+Q     +P +        L+       +     +V  +E     ++     
Sbjct: 145 QATALQAAKQARRARVPEVEEVRDTRRLVDWVGQTVRGGGVVLVLHEEASTPISTAMESV 204

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +L A    P  +A+++GPEGG   EE   L +    T + LGP ++R+ +A   A+A++ 
Sbjct: 205 RLPAPGEAPRALAVVVGPEGGISPEETAALETAG-ATTVRLGPHVMRTASAGPVALAVLA 263

Query: 239 AICGDW 244
              G W
Sbjct: 264 HASGLW 269


>gi|123965976|ref|YP_001011057.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200342|gb|ABM71950.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. MIT 9515]
          Length = 259

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 14/248 (5%)

Query: 9   RLFVDFPLCIKTQ---GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           RL +     I  +    K + ++ HYL  V+R+K G  I + NG+   W +K        
Sbjct: 6   RLLIQNERIIGNKNKNLKLTKEEAHYLNKVMRIKIGREIFITNGQGSLWKAKKLEQNFLE 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH---- 121
              ++     Q K+     I   +  N  + +++   E+G+  I+P+ +      +    
Sbjct: 66  INNIDNPYFVQEKEKVSLGIAVVVPKNGFEDILKMCTEIGIDLIQPLFSERQVKNNSNFL 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSEN-- 176
               R  +    A EQ + L  P I     L   + + D    I   +  D++  + N  
Sbjct: 126 KRNIRWNSIINEAVEQSERLWRPLILGGVNLIDWIDSRDSKDIISISITRDDSSENLNHW 185

Query: 177 SLEKLHAIAHIPNVAI-LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              K + +     V   ++GPEGG+   E E       ++ + L   ILR+ TA V A +
Sbjct: 186 LKRKQNLLKKNGGVLWNVVGPEGGWSRNEIEFFLKNK-ISFVKLSETILRTSTATVNATS 244

Query: 236 LVQAICGD 243
           ++     D
Sbjct: 245 ILNQWRND 252


>gi|328882378|emb|CCA55617.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 9/223 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFK 68
           FV   +         G +  +   V R++EG+ ++L +G        +        +  +
Sbjct: 6   FVVDAVPGPGSFLLDGPEGRHAVSVKRLREGEELVLADGGGRWAACVVLAAEGKDQLTVR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V+       ++  +  + +  K +R +  ++   E G+ AI P                 
Sbjct: 66  VDEVHEDPAEEPRITVVQALPKGDRGELAVETMTETGVDAIVPWAASRCITQWKGDRGLK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + + R+    A +Q      P +  P T + +              E     +      
Sbjct: 126 ALAKWRSTAREAGKQSRRSRFPEVAEPMTTKQVAALLAGADFAAVLHEDRDHPSGALATA 185

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +     + +++GPEGG   EE     +     P  LG  +LR
Sbjct: 186 ELPAKGAIVLVVGPEGGVSPEELAVFEAAG-AKPYRLGRSVLR 227


>gi|269794664|ref|YP_003314119.1| hypothetical protein Sked_13450 [Sanguibacter keddieii DSM 10542]
 gi|269096849|gb|ACZ21285.1| conserved hypothetical protein TIGR00046 [Sanguibacter keddieii DSM
           10542]
          Length = 257

 Score =  158 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 82/242 (33%), Gaps = 14/242 (5%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSR 74
           L         G +  +   V R   G+ I + +G       +++ V    +  +V    +
Sbjct: 16  LTQGDTYVLDGLEGRHAGVVQRRGVGERIDVVDGAGLRLTCRVTAVQAAEVTLEVVESVQ 75

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
             T    V  + +  K +R +  I+ + E G+ A+ P     +           +  R  
Sbjct: 76  ESTDGVSVVLVQALAKGDRDELAIEAATEAGVDAVLPWQAERSVVVWRGDRAAKSRARWV 135

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH-- 186
               +A +Q    +LP +      + L                   E +L          
Sbjct: 136 ATVRAATKQARRASLPGVGEVVDAKGLAARTAQVVASGGVVVVLHEEATLPIAQVPLPAR 195

Query: 187 ----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               +  V +++GPEGG    E   L      T   LGP +LR+ TA   A+AL+    G
Sbjct: 196 TGDAVAEVLVVVGPEGGISDRECTLLTEAG-ATLARLGPHVLRTSTAGPIAVALLSERLG 254

Query: 243 DW 244
            W
Sbjct: 255 RW 256


>gi|220904439|ref|YP_002479751.1| 16S ribosomal RNA methyltransferase RsmE [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868738|gb|ACL49073.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 252

 Score =  158 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 6/231 (2%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            F   P     +      +  +L+ VLR+  G+ + L +G+  +    +   GK  ++ +
Sbjct: 5   FFYLAPEKWAKEVCLEDQEARHLSQVLRLGPGNEVGLLDGRGRKGRFIVRKAGKKNVQLE 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT--HYNMDR 126
              + R    ++      +  K  R  + ++K+VE+G   I      ++Q        + 
Sbjct: 65  CISEERLPLPEARAIIALAFSKAVRRGFFMEKAVELGAHGIWLWQGDHSQGKLSAAAEEA 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
                ++ A+QC    LP I      ++ L          +   E   +   L    A  
Sbjct: 125 CHGQLVAGAKQCGNPWLPEIRGLANGVDELATLAAGADHRILPWEAQDNVPMLTPALAGQ 184

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
              +V  +IGPEGG+ S E + L    FV  +SLG R+LR +TAA   + L
Sbjct: 185 PGLSV-YVIGPEGGFSSRELDMLKRSGFV-AVSLGARVLRCETAATLCLGL 233


>gi|220912725|ref|YP_002488034.1| 16S ribosomal RNA methyltransferase RsmE [Arthrobacter
           chlorophenolicus A6]
 gi|219859603|gb|ACL39945.1| protein of unknown function DUF558 [Arthrobacter chlorophenolicus
           A6]
          Length = 257

 Score =  158 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 12/240 (5%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSR 74
           L    +    G +  +   V R+  G+ + + +G        ++   G  +  +      
Sbjct: 16  LEEGMEFVLEGPEARHAVAVKRLAAGEAVDIVDGAGTRMSGTVAEAAGTRLTVRCGTLVE 75

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
               +  +  + +  K +R +  I+ S E+G+ A+ P  +  +              + +
Sbjct: 76  EARPRVRLVLVQALAKGDRDELAIETSTELGIDAVIPWQSERSIVRWKGDRAAKAHGKWQ 135

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAH 186
           +   +AA+Q     +P +        L    +     +   E         LE     + 
Sbjct: 136 SVVGAAAKQARRAWIPEVRSAVDTAALAAAVETADLAIILHEDAVRPLRAVLEGWEGASG 195

Query: 187 IP--NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                V +++GPEGG    E   L     VT L LG  +LRS TA  AA+ L   I G W
Sbjct: 196 TGTREVLLIVGPEGGISPREVTRLCDRGAVTAL-LGHHVLRSSTAGPAAVVLSSDILGRW 254


>gi|15644132|ref|NP_229181.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga maritima MSB8]
 gi|4981941|gb|AAD36450.1|AE001791_12 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 222

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +  LF         +      + H++  V+R+KEGD I   +G    +   +  + K   
Sbjct: 1   MPHLFYGT--AQNGEVIFDEREAHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                +   + K+   +        +  R  ++I+K VE+G+  I       +Q    ++
Sbjct: 58  AAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISL 116

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           D+ +     AA+QC     P +         L+  + +  ++  D    S+N L+     
Sbjct: 117 DKAKIVVREAAKQCKRYLFPKVS-------FLEKLEFSGNVITLD-LDASQNLLDANLE- 167

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               ++ +++GPEGG+  +E+E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 168 ---GSITVVVGPEGGFSEKERELLRSS--TTIVSLGKKILRFETAAILTVGYI 215


>gi|293363228|ref|ZP_06610112.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2]
 gi|292553087|gb|EFF41836.1| RNA methyltransferase, RsmE family [Mycoplasma alligatoris A21JP2]
          Length = 230

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 21/239 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F       +   +   +   +LA V+R++      + N  +  +L ++     ++ 
Sbjct: 1   MNRFF-ATSQINENYFELDKETLKHLA-VIRIE--QKPFIINYLEKFYLCRLE---NNLA 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QN 119
             +E    +     +V    S IK  R +++IQK++E+G   I P+I+++T         
Sbjct: 54  KIIEPLDINNELGYEVILAASIIKIERYEWLIQKAIELGATKIVPIISKHTDGSIYKHDK 113

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                DR  T   SA EQ     L  + P    +  +  + +      A E       L+
Sbjct: 114 FAKKYDRFNTIIKSATEQSFRNKLITLDPIMDYKKAIYKYKYINNKYIAHEI-----DLQ 168

Query: 180 KLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           K   +  I + V   +GPEGGY   E +      +   + LG RILR++TA++  ++ +
Sbjct: 169 KTSKLDKIKSDVIFFVGPEGGYDQSEIDYALENNY-KCIYLGKRILRAETASIYLLSQL 226


>gi|33861225|ref|NP_892786.1| hypothetical protein PMM0668 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639957|emb|CAE19127.1| Conserved hypothetical protein 46 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 257

 Score =  158 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 16/251 (6%)

Query: 7   LKRLFVDFPLCIKTQ---GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           L RLF+     I  +    K + ++  Y+  V+R+K G  I + NG+   W + I+    
Sbjct: 4   LTRLFMQNERIINNKNNDLKLTNNEARYINKVMRIKIGKEIFITNGEGSLWKA-INLEDN 62

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-- 120
            I+           ++  +    +  I  N ++ +++   E+G+  I+P+ +        
Sbjct: 63  YIKINDINNPYLFQEKEKILLGIAVVIPKNGVEDILKMCTEIGIDFIQPLYSDRQVKKYT 122

Query: 121 --HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSE 175
                + R  +    A EQC+ L  P I     L   + + ++   I   V  D++  + 
Sbjct: 123 NFSNKLIRWNSIVNEAVEQCERLWRPSILSGINLFDWINSLENKDIISVSVTRDDSTDNL 182

Query: 176 NS-LEKLHAIAHIPNVAI--LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
           N  L+K  ++       +  +IGPEGG+   E E       +  + L   ILR+ TA V 
Sbjct: 183 NHWLKKKQSVLDKKGGVLWNVIGPEGGWSQGEIEFFIKNK-IAFVKLSESILRTSTATVN 241

Query: 233 AMALVQAICGD 243
           A +++     D
Sbjct: 242 ATSILSQWRND 252


>gi|172041014|ref|YP_001800728.1| hypothetical protein cur_1334 [Corynebacterium urealyticum DSM
           7109]
 gi|171852318|emb|CAQ05294.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 245

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 21/243 (8%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           +   + +    + +G +  + + V R+ +G+ +++ +G         S  G      V  
Sbjct: 6   LPQGVAVGDSVQLTGAEARH-SQVKRIADGEAVIVSDGAATAVRGTFSSAG----VHVSE 60

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDR 126
                     V  + +  K++R +  +   V+ G   I P      I R+ +     + R
Sbjct: 61  LLELPQPSPRVTIVQALPKSDRSELAVDLMVQAGADRIIPWAASRCIARWDKKEDKALAR 120

Query: 127 VRTYTISAAEQCDILTLPFI--------YPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 +A +Q   L LP I          P  +  L          +  ++  GS  + 
Sbjct: 121 WEKTAFAATKQSRRLVLPEITGLLRNLTDLPKLVPGLASPASTARLGMLHEDARGSFRTF 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             +   A + ++ ++IGPEGG   EE  TL  L   + + LGP +LR+ TA   A+  + 
Sbjct: 181 --VEGAADVEDIVLVIGPEGGIAPEELATLEELGGQSVV-LGPEVLRTATAGAVALGAIG 237

Query: 239 AIC 241
           A+ 
Sbjct: 238 ALT 240


>gi|33240474|ref|NP_875416.1| hypothetical protein Pro1024 [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238002|gb|AAQ00069.1| Uncharacterized conserved protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 254

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 24/253 (9%)

Query: 4   HSHLKRLFVDFPLCIKTQ------GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK 57
            + L+RL +D PL I            +G + HYLA VLR++ GD+I + +G    W + 
Sbjct: 1   MAELRRLLID-PLRINKSSLNNNIIDLTGQESHYLARVLRLRYGDHINIVDGVGHLWTA- 58

Query: 58  ISYVGKSIRFKVEYQSRSQT----KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113
             ++ + +       S  +     K   +       K +  D +++ S E+G+  ++P+I
Sbjct: 59  -DFIKEDLIKLHSDLSNPEVTESKKNPLICLAVVVPKQD-FDDILRMSTEIGIDVLQPII 116

Query: 114 TRYTQNTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVF--- 167
           +  +   ++    + R  +    A EQ + L  P +         +  +  +  +     
Sbjct: 117 SDRSVVRNFQSERVKRWDSIINEAVEQSEQLWKPKLKEIICFNEWIDIYRKSTLMALGTT 176

Query: 168 -ADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             D     E+ L  +     +  + I IGPEGG+ + E            + L   IL++
Sbjct: 177 RIDNAIPFESLLNDIKD--DLNQICIAIGPEGGWSNHEIFLAREKECAN-VLLADTILKN 233

Query: 227 DTAAVAAMALVQA 239
            TAA+ A  ++ +
Sbjct: 234 TTAAIVATQIMSS 246


>gi|215427748|ref|ZP_03425667.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T92]
 gi|289750971|ref|ZP_06510349.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691558|gb|EFD58987.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 236

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 17/236 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            GD+  + A V R++ G+ ++L +G        +   G+  +R +
Sbjct: 6   FYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +      +  V  + +  K+ R +  I+ + E G  A                    
Sbjct: 66  VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177
            + R R    SAA Q     +P +    +   L++            +V  +E       
Sbjct: 126 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +    A A   ++ +++GPEGG   +E   L     V  + LGP +LR+ TAA  A
Sbjct: 186 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTSTAAAVA 236


>gi|254819390|ref|ZP_05224391.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 253

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            + D            GD+  + A V R++ G+ ++L +G  G    ++ + G+  +R +
Sbjct: 6   FYADALPETGALAVLGGDEGFHAASVRRIRPGEQLVLGDGAGGLARCEVEHAGRDGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V  +         V  + +  K+ R +  I+ + E G          R V          
Sbjct: 66  VLKRWSVAPGTPPVTVVQALPKSERSELAIELATEAGADGFLAWRAARCVANWQGARVEK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLE 179
            + R R    SAA Q     +P +    +   L   +++       V A     +E    
Sbjct: 126 GLRRWRAVARSAARQSRRAHIPPVDGVLSTPALTSRIRDEVAGGATVLALHESATERLAH 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +A   +V +++GPEGG   +E   L      T + LGP++LR+ T
Sbjct: 186 A--DLAGATSVFLVVGPEGGIADDEMAALSDAG-ATAVRLGPQVLRTST 231


>gi|289425193|ref|ZP_06426970.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK187]
 gi|289427156|ref|ZP_06428872.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J165]
 gi|295130479|ref|YP_003581142.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK137]
 gi|289154171|gb|EFD02859.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK187]
 gi|289159625|gb|EFD07813.1| RNA methyltransferase, RsmE family [Propionibacterium acnes J165]
 gi|291376859|gb|ADE00714.1| RNA methyltransferase, RsmE family [Propionibacterium acnes SK137]
 gi|313764574|gb|EFS35938.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL013PA1]
 gi|313772386|gb|EFS38352.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL074PA1]
 gi|313792264|gb|EFS40365.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL110PA1]
 gi|313801786|gb|EFS43020.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL110PA2]
 gi|313807397|gb|EFS45884.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL087PA2]
 gi|313809905|gb|EFS47626.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL083PA1]
 gi|313813059|gb|EFS50773.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL025PA1]
 gi|313816115|gb|EFS53829.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL059PA1]
 gi|313818444|gb|EFS56158.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL046PA2]
 gi|313820207|gb|EFS57921.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL036PA1]
 gi|313822984|gb|EFS60698.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL036PA2]
 gi|313825087|gb|EFS62801.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL063PA1]
 gi|313827986|gb|EFS65700.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL063PA2]
 gi|313830236|gb|EFS67950.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL007PA1]
 gi|313834037|gb|EFS71751.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL056PA1]
 gi|313838614|gb|EFS76328.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL086PA1]
 gi|314915571|gb|EFS79402.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL005PA4]
 gi|314918475|gb|EFS82306.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL050PA1]
 gi|314919963|gb|EFS83794.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL050PA3]
 gi|314925435|gb|EFS89266.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL036PA3]
 gi|314955845|gb|EFT00245.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL027PA1]
 gi|314958326|gb|EFT02429.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL002PA1]
 gi|314960119|gb|EFT04221.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL002PA2]
 gi|314962925|gb|EFT07025.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL082PA1]
 gi|314968001|gb|EFT12100.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL037PA1]
 gi|314973242|gb|EFT17338.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL053PA1]
 gi|314975917|gb|EFT20012.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL045PA1]
 gi|314978325|gb|EFT22419.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL072PA2]
 gi|314984065|gb|EFT28157.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL005PA1]
 gi|314987769|gb|EFT31860.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL005PA2]
 gi|314990048|gb|EFT34139.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL005PA3]
 gi|315078139|gb|EFT50190.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL053PA2]
 gi|315080767|gb|EFT52743.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL078PA1]
 gi|315084435|gb|EFT56411.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL027PA2]
 gi|315085775|gb|EFT57751.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL002PA3]
 gi|315088807|gb|EFT60783.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL072PA1]
 gi|315096154|gb|EFT68130.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL038PA1]
 gi|315098417|gb|EFT70393.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL059PA2]
 gi|315101227|gb|EFT73203.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL046PA1]
 gi|315108450|gb|EFT80426.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL030PA2]
 gi|327326071|gb|EGE67861.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL096PA2]
 gi|327332057|gb|EGE73794.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL096PA3]
 gi|327443260|gb|EGE89914.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL013PA2]
 gi|327446047|gb|EGE92701.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL043PA2]
 gi|327447973|gb|EGE94627.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL043PA1]
 gi|327450900|gb|EGE97554.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL087PA3]
 gi|327453021|gb|EGE99675.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL092PA1]
 gi|327453751|gb|EGF00406.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL083PA2]
 gi|328753588|gb|EGF67204.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL020PA1]
 gi|328754322|gb|EGF67938.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL087PA1]
 gi|328754427|gb|EGF68043.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL025PA2]
 gi|328760428|gb|EGF73996.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL099PA1]
 gi|332675317|gb|AEE72133.1| ribosomal RNA small subunit methyltransferase E [Propionibacterium
           acnes 266]
          Length = 246

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75
              +  + +  + H+   V R++ G+ +L+ +G+        I     S+  +      +
Sbjct: 14  VPGSVVEITDAEGHHAGSVRRIRVGETVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129
                    + +  K++R +  +    EMG+  I      R ++          + R + 
Sbjct: 74  PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               A +Q     +P +    T E + +  +     V  +    SE  +     +     
Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLHE--SASEPLVH--QELPASGE 189

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V  ++GPEGG  S+E E   +     P+++   +LR+ TA V  +A ++A
Sbjct: 190 VIFIVGPEGGITSQEVEAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238


>gi|313837294|gb|EFS75008.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL037PA2]
 gi|314928032|gb|EFS91863.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL044PA1]
 gi|314971790|gb|EFT15888.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL037PA3]
 gi|328907156|gb|EGG26922.1| RNA methyltransferase, RsmE family [Propionibacterium sp. P08]
          Length = 246

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75
              +  + +G + H+   V R++ G+++ + +G+        I     S+  +V     +
Sbjct: 14  APGSVVEITGAEGHHAGSVRRIRVGESVFVTDGQGHAVRGPAIEVTKGSVNVEVVEILET 73

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129
                    + +  K++R +  +    EMG+  I      R ++          + + ++
Sbjct: 74  PATAHWWVAVQALPKSDRAELAVATLTEMGVHEILAWQAGRSIVRWKGDKQAKGVAKWQS 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               A +Q     +P +    T E + +        +  +    +E  +     +     
Sbjct: 134 AAREATKQSRRFRIPQVELAQTREVVERIRSAEAAYILHE--TATEPLVH--QELPAFGE 189

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V  ++GPEGG   +E +   +     P+++   +LR+ TA V  +A ++A
Sbjct: 190 VIFIVGPEGGITDQEVDAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238


>gi|25028744|ref|NP_738798.1| hypothetical protein CE2188 [Corynebacterium efficiens YS-314]
 gi|259507805|ref|ZP_05750705.1| RsmE family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23494030|dbj|BAC18998.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164598|gb|EEW49152.1| RsmE family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 241

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 94/245 (38%), Gaps = 20/245 (8%)

Query: 11  FV-DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRF 67
           F+ D           +G +  +   V R+  G+ ++L +G       +++ V     +  
Sbjct: 6   FISDTVAAAGEHVTVTGPEGRHAVTVKRITPGERVMLIDGHGTARTCQVTAVSGRDRMDV 65

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122
            VE           V  + +  K+ R +  +    + G   I    ++ T          
Sbjct: 66  VVESVEEIPPPDPRVTIVQAIPKSERSELTVDLLTQAGADRIVAWQSQRTIAKWAGKEAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLE 179
           ++ + +    +AA+Q    T+P +        ++ L++  D    I+  +E        +
Sbjct: 126 SLTKWQAAAEAAAKQSRRATIPEVVGVVDTAGVDKLIEEAD--LAIILHEEAS------Q 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
               +    +V ++IGPEGG   EE     +    T + LGP +LR+ +A + A+A +  
Sbjct: 178 PFRELNFTGDVVVIIGPEGGVSPEEIHRFTAAGAHT-VKLGPEVLRTASAGMVALAAIGV 236

Query: 240 ICGDW 244
           +   W
Sbjct: 237 LSNRW 241


>gi|302545472|ref|ZP_07297814.1| RsmE family RNA methyltransferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302463090|gb|EFL26183.1| RsmE family RNA methyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 289

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 17/228 (7%)

Query: 11  FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           FV   L       +    G +  +   V R++ G+ ++L +G        ++ V    R 
Sbjct: 48  FVADSLAGAATGARIALEGPEGRHAVSVKRLRAGEAVILTDGAGTGVSGTVAAVEGKDRL 107

Query: 68  KVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            VE             +  + +  K +R +  ++   E G+ AI P            + 
Sbjct: 108 LVEVDGVRHEAAPSPRITVVQALPKGDRGEVAVETMTETGVDAIVPWTAARCITQWKGER 167

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSENSL 178
               + + R+    A +Q   L  P +    T + + +   D +   V  +E      + 
Sbjct: 168 GQKALGKWRSTAREAGKQSRRLIFPEVADAMTTKEVARLLADADLAAVLHEEGSDPLATA 227

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +    + H  ++ +++GPEGG   EE     +     P  LGP +LR+
Sbjct: 228 Q----LPHEGHIVLVVGPEGGVSPEELAAFAAAGG-RPYRLGPSVLRT 270


>gi|284030358|ref|YP_003380289.1| hypothetical protein Kfla_2416 [Kribbella flavida DSM 17836]
 gi|283809651|gb|ADB31490.1| protein of unknown function DUF558 [Kribbella flavida DSM 17836]
          Length = 245

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 80/219 (36%), Gaps = 16/219 (7%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ 76
              +    G +  + A V R+  G+ + L +G+       +    KS +   V+ ++   
Sbjct: 19  AGDELTLDGPEGRHAAVVRRIGMGERLRLTDGRGSFAEGAVVAASKSGVTVAVDRRAEVP 78

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
                +  + +  K  R +  ++   E+G   I P     +      +     + + R +
Sbjct: 79  PPAPRLVVVQALPKGERAELAVEMLTEIGADLIVPWNADRSQFRANPERVEKTLTKWRAW 138

Query: 131 TISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
              A++Q        + P  + +E            V  +E       L+    +    +
Sbjct: 139 AFEASKQSRRSWFCEVAPVASTVEVAALVAGAGLAAVLHEEAKAPLAGLD----VPATGD 194

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           + +++GPEGG    E ++L       P+ LG  +LR+ T
Sbjct: 195 LVVVVGPEGGITPAELDSL----GAEPVLLGDTVLRTST 229


>gi|294786868|ref|ZP_06752122.1| RNA methyltransferase, RsmE family [Parascardovia denticolens
           F0305]
 gi|315226504|ref|ZP_07868292.1| RsmE family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294485701|gb|EFG33335.1| RNA methyltransferase, RsmE family [Parascardovia denticolens
           F0305]
 gi|315120636|gb|EFT83768.1| RsmE family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 290

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 29/260 (11%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70
           F    L              +    +R+ +GD +LL +G+  +  ++I+   ++    VE
Sbjct: 31  FSRDSLSEGMTFLLPASVRRHAVKAMRLGQGDGLLLSDGRGLKVQARITD-PQAGAVMVE 89

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNM 124
                      +  I +  K+ R +  I+ + E+G+  + P   + +             
Sbjct: 90  KIGLEPAPAVKLGLIQALAKSGRDEQAIEMATEIGVDRVIPWQAQRSIVLWKGSKAGKGR 149

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGSENSLE 179
           ++ R   I+A EQ     LP + P    + L           +  IV   +   S  S+ 
Sbjct: 150 EKWRDQLIAATEQSRRSWLPQLDPVMNSKQLAAWISQVVGFGDTVIVLHQDASESWGSIS 209

Query: 180 KLHAIA----------------HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
              A                    P + +++GPEGG   EE            L +G  I
Sbjct: 210 DRLAEKYRMAIETAGQGETRGEEAPTIFVIVGPEGGISDEEIGLFKEAGATLAL-IGRNI 268

Query: 224 LRSDTAAVAAMALVQAICGD 243
           LR+ +A   A+ L+  I G 
Sbjct: 269 LRASSAGPVALTLLTRIIGR 288


>gi|308811582|ref|XP_003083099.1| unnamed protein product [Ostreococcus tauri]
 gi|116054977|emb|CAL57054.1| unnamed protein product [Ostreococcus tauri]
          Length = 317

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 98/257 (38%), Gaps = 38/257 (14%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +  S L R +VD  L   T  + S ++  + A  LR++ G  + + +G      + +  V
Sbjct: 39  RRPSTLHRFYVDEELRANTTTRLSREETRHAAKALRLRPGVAVEVCDGVGRLARATLGDV 98

Query: 62  ------GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
                       +V+   RS     DV   F+ +K  R D++++K  E+G   + P++  
Sbjct: 99  LDGRFVVDVEDVRVDVDGRSSGIDWDVVCAFAGLKGGRGDWLVEKCAELGARRLVPLLAS 158

Query: 116 YTQNTHYNMD------------RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC 163
            ++      +            R      +A++Q        +   T +E L +      
Sbjct: 159 RSERRSTRGEDGEGDARRGRAGRWDRVARAASKQSLRARELAVGETTDVEALCRE----- 213

Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVA------------ILIGPEGGYHSEEKETLHSL 211
             +  +   G+  +L  L   A + +VA            +++GPEG +  EE   +   
Sbjct: 214 --MAREREVGTRVTLLALQGGAPVADVAREVGPRAMRAGRVVVGPEGDFTDEEVRAMIRA 271

Query: 212 PFVTPLSLGPRILRSDT 228
               P+ LG   LR +T
Sbjct: 272 G-ARPIGLGTLRLRVET 287


>gi|302336696|ref|YP_003801902.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM
           11293]
 gi|301633881|gb|ADK79308.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM
           11293]
          Length = 272

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 98/264 (37%), Gaps = 36/264 (13%)

Query: 9   RLFV----DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--- 61
           R FV    +  L    +   + ++ HYL  VLR+ +G      + +   +L  +      
Sbjct: 2   RTFVLDDSETKLASGKRFSPAPERAHYLLRVLRLSQGAVFPGQDSRGKRYLITLESETPC 61

Query: 62  -----------GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110
                       + +                + +  + +K  ++D +I+++ E G   I 
Sbjct: 62  TLSLRREEEASAREVEACFRELPEQGPDFPPIIFYQAILKGKKMDQVIRQATEAGADFII 121

Query: 111 PVITRYTQN------THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH--- 161
           PV+T  +              R       A +Q    T   +  P +L+ ++++      
Sbjct: 122 PVLTDRSVPQFTPGEAEKKQKRWEIIVREAIQQSG-ATGTTLLLPRSLKKVIEDPPMPRP 180

Query: 162 -----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP 216
                  ++ F +    + +    L     I ++   +GPEGG+  +E E      F  P
Sbjct: 181 QGGGREVKLFFHERPIANGSLHGYLSG--EISSITAAVGPEGGFSPKESEMFLQAGFC-P 237

Query: 217 LSLGPRILRSDTAAVAAMALVQAI 240
           L     ILR++TAA+  +A ++A+
Sbjct: 238 LFFSGNILRAETAAIYGLAAIRAL 261


>gi|49660071|gb|AAT68326.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
          Length = 168

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQ 137
           Q  V   F  +K  R D++I+K  E+G  ++ P++T  +   +   +DR+   + +AA+Q
Sbjct: 2   QWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQ 61

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    + PP     LL +   +   + A  T  ++  L  +++ A   +  +++GPE
Sbjct: 62  CQRLHQMVLNPPIKFGTLLDHILKSKLCLVA--TAEAKPLLNAVNSSAKESSGLLIVGPE 119

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G +  +E E +      T + LGP  LR +TA +A +A +  +  D
Sbjct: 120 GDFTKKEVEMMLEAGG-TAVGLGPHRLRVETATIALLATL-VMWSD 163


>gi|281357011|ref|ZP_06243501.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316569|gb|EFB00593.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
          Length = 229

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 11/232 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +   F +         + +  +  +L   LR   GD + L +G+ G  L+ +        
Sbjct: 1   MHSFFCNTLGKAGEPVELAKRESDHLFKTLRAAPGDTVELLDGRGGRALATVQP---GRV 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
                + +    ++ +    +  +  + D +++++ E+G+  IR ++   +       DR
Sbjct: 58  LLTVSREQVPEPETGLLLYTAVPRKAKFDTLLKQAAELGVREIRLLLCERSVAAPEGSDR 117

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
             T      +Q     LP I PP  L   L  +        A E  G+E           
Sbjct: 118 WETLLQEGCKQSGNPFLPKIAPPVKLAAALAEFSGTGY-FGAVENPGAEAPRPA------ 170

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             NVA  +GPEGG+ +  +E   +   +  L+LGP +LR +TAAV  +A+++
Sbjct: 171 AGNVAWFVGPEGGFTAA-EEEAMAHANIHALNLGPYVLRLETAAVCGLAVLR 221


>gi|148270532|ref|YP_001244992.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga petrophila
           RKU-1]
 gi|281412840|ref|YP_003346919.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10]
 gi|147736076|gb|ABQ47416.1| protein of unknown function DUF558 [Thermotoga petrophila RKU-1]
 gi|281373943|gb|ADA67505.1| protein of unknown function DUF558 [Thermotoga naphthophila RKU-10]
          Length = 222

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 20/233 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +  LF         +      + H++  V+R+KEGD I   +GK   +   +  + K + 
Sbjct: 1   MPHLFYGT--AQNGEVIFDERETHHM-RVVRLKEGDVIEATDGKGFSYTCILESLKKKVA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                ++  + K+S  +        +  R  ++I+K VE+G+  I       +Q    ++
Sbjct: 58  TARIVKAEEKEKKSAEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISL 116

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           D+ +     +A+QC     P +         L+  + +  ++  D         + L  +
Sbjct: 117 DKTKIVVRESAKQCRRYLFPKVS-------FLEKLELSGNVITLDLDAS-----QNLLDV 164

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               ++ +++GPEGG+  +E+E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 165 NLEGSITVVVGPEGGFSEKERELLRSS--TTVVSLGKKILRFETAAILTVGYI 215


>gi|225850017|ref|YP_002730251.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498
           methyltransferase) [Persephonella marina EX-H1]
 gi|225646741|gb|ACO04927.1| ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498
           methyltransferase) [Persephonella marina EX-H1]
          Length = 234

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 107/224 (47%), Gaps = 13/224 (5%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDV 82
            + D+  + A V R+K GD I + + K   +L+++  + K  I+ ++  + + + +   +
Sbjct: 17  LTEDELKH-AKVKRVKTGDRIEINDLKGNVYLTEVLEITKRYIKCRIIEKIKVEEEDFRI 75

Query: 83  QYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----DRVRTYTISAAEQ 137
                     +++D +I+   ++G+    PVI+  +     ++     +     +++ +Q
Sbjct: 76  TLYQCMPNQLSKIDDIIEGVSQLGVYRFVPVISERSAVKTKDVLKKIKKWEKKALNSIKQ 135

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
           C  L    I  P  LE +    D   + VF ++    + ++++      + NV+++IGPE
Sbjct: 136 CKRLYPVIIENPVKLEDI--KSDDEGKFVFYEKE--EKRTVKEFLD-KKLKNVSVVIGPE 190

Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           GG+   E + L    F+ PL++G  ILR +TA +  +  ++ + 
Sbjct: 191 GGFTEGEIKILQDKGFI-PLTMGKNILRMETAVITGICQIRFLF 233


>gi|218961073|ref|YP_001740848.1| hypothetical protein CLOAM0759 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729730|emb|CAO80642.1| conserved hypothetical protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 233

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 6/209 (2%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
           +  L++      K      G+++H+L +V R   G+ + L +G       K++ + K S 
Sbjct: 1   MPSLYLPELSSDKKIIAVEGEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNSA 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-- 123
             ++         +      F+ IK    + +I+K  E+G+ A  P++T Y+        
Sbjct: 61  VIEIIKIETFPFPERPFAIAFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVRIPSKNT 120

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R +   ++A +QCD   LP I  P + +  ++       I      C  +   +K+ A
Sbjct: 121 TQRFKRTALAAIKQCDNPWLPRINEPLSFKQAIEKIISEGWI---PVLCSEKRPAKKISA 177

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLP 212
           + +      +IGPEGG+   E    +   
Sbjct: 178 LPNNIKPCFIIGPEGGFSEAEFAFFNEKN 206


>gi|218516761|ref|ZP_03513601.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli 8C-3]
          Length = 133

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 86/132 (65%), Gaps = 1/132 (0%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+ +  ++RLFVD PL      +A+ +Q++YLA+VLRM+    ILLFNG+DGEW + +S+
Sbjct: 1   MRANFRMQRLFVDAPLSAGAAIEANAEQFNYLANVLRMEADAEILLFNGRDGEWKASLSF 60

Query: 61  -VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
              K I      Q R Q    D+ Y+F+P+K  R+DY++QK+VEMG G ++PV+T++ Q 
Sbjct: 61  PTRKRILLTAIEQMRPQPAPCDLHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQG 120

Query: 120 THYNMDRVRTYT 131
              N+D++R   
Sbjct: 121 KITNLDKLRANV 132


>gi|254382699|ref|ZP_04998056.1| protein involving differentiation [Streptomyces sp. Mg1]
 gi|194341601|gb|EDX22567.1| protein involving differentiation [Streptomyces sp. Mg1]
          Length = 247

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 9/223 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFK 68
           FV   +    +    G +  +   V R+  G+ ++L +G+ G   + +        +   
Sbjct: 6   FVVEEVPAGPEFVLDGPEGRHAVSVKRLNPGEAVVLTDGRGGWAQAVVKAAEGKDRLVVA 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
           V            +  + +  K +R +  ++   E G+ AI P                 
Sbjct: 66  VSGVFTEAEPAVRITVVQALPKGDRGEVAVETMTETGVDAIVPWQASRCITQWRGDRGAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           ++ + R     A +Q   ++ P +    + + +          +   E   + +      
Sbjct: 126 SLAKWRGTAREAGKQSRRVSFPEVAEAMSTKQVAALLADADLAMVLHEDRDAPSQALATA 185

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +    ++ +++GPEGG   EE     ++    P  LG  +LR
Sbjct: 186 ELPAAGSIVLVVGPEGGVSPEELAAFAAVG-AHPYRLGRPVLR 227


>gi|260903866|ref|ZP_05912188.1| 16S ribosomal RNA methyltransferase RsmE [Brevibacterium linens
           BL2]
          Length = 248

 Score =  155 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 8/238 (3%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR-FKVEYQ 72
                        D   +   V R+  GD + + +G        ++    +    +V   
Sbjct: 12  AEAAAGQVLTFGEDVAGHAVRVRRLGPGDELEVVDGAGTRVRGTVTSASANEMGLQVASV 71

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
           + ++ ++  +  + +  K +R    I+ + E+G+  + P     +      +       +
Sbjct: 72  THAEVERPRLVLVQALAKADRDLQAIEAATEIGVDEVVPWAAERSIADWPAKKRDKLAAK 131

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                 +A+ Q      P  +       L         +    E    + S       A 
Sbjct: 132 WDNVLRAASLQARRARFPLRHDLVRGTGLAGALSEGDTVYVLHEAAELKLSQALSRFDAG 191

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              + +++GPEGG    E E L ++   T + LGP +LRS +A  A + + Q   G W
Sbjct: 192 SDRIVLVVGPEGGISDAELEALSAIGADT-VLLGPTVLRSSSAGAAGLVMAQNSLGRW 248


>gi|308235191|ref|ZP_07665928.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis
           ATCC 14018]
 gi|311114847|ref|YP_003986068.1| RsmE family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310946341|gb|ADP39045.1| RsmE family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 265

 Score =  155 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 90/240 (37%), Gaps = 18/240 (7%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
                     +    +R+ +GD++ L +GK     + I+   ++   +V+   +     +
Sbjct: 27  TLSLPQHVKRHAISAMRLSDGDSLDLSDGKGVRIHATITD-SENGLVRVDSFIKEPAPTT 85

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NMD-RVRTYTISAAEQ 137
            +  I +  KT   +  I  + ++G+  + P     + +       D R      +A EQ
Sbjct: 86  RLTLIQALAKTGHDEQAIDMATQIGVDEVIPWCANRSISKWKPGRTDKRWNQVLEAATEQ 145

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGS--------ENSLEKLHAI 184
                +P +  P T + +L      C      +V   +   S         +  EK    
Sbjct: 146 SRRAWIPQLLEPVTSKQILAICRRACVYGSLVVVLHQDATDSFSQIENYVNDLTEKCLKD 205

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                V +++GPEGG   EE ++       + + LG  ILR+ TA    ++L+    G +
Sbjct: 206 GKTRTVYVVVGPEGGISEEEVQSFIDAGAKSCV-LGSNILRASTAGPVCLSLLSRALGRY 264


>gi|327330777|gb|EGE72523.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL097PA1]
          Length = 246

 Score =  155 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 12/230 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75
              +  + +  + H+   V R++ G+ +L+ +G+        I     S+  +      +
Sbjct: 14  VPGSVVEITDAEGHHAGSVRRIRVGETVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129
                    + +  K++R +  +    EMG+  I      R ++          + R + 
Sbjct: 74  PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               A +Q     +P +    T E + +  +     V       SE  +     +     
Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLH--VSASEPLVH--QELPASGE 189

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V  ++GPEGG  ++E E   +     P+++   +LR+ TA V  +A ++A
Sbjct: 190 VIFIVGPEGGITTQEVEAFVAAG-ARPVTVSDGVLRTSTAGVVGLAQLRA 238


>gi|239941049|ref|ZP_04692986.1| 16S rRNA m3U1498 methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239987528|ref|ZP_04708192.1| 16S rRNA m3U1498 methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291444489|ref|ZP_06583879.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291347436|gb|EFE74340.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 248

 Score =  155 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 10/225 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70
           FV   +    +    G +  +   V R++ G++++L +G        +       R  V 
Sbjct: 6   FVVERMPTGPEFVLEGPEGRHAVSVKRLQPGEDVVLTDGLGHWAEGVVHSAEGKDRLTVT 65

Query: 71  YQ---SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
                      +  +  + +  K +R +  ++   E G+ AI P                
Sbjct: 66  LHAGVQEEPEPRPRITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWKGDRGA 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + + R+    A +Q   +  P +    T + +              E    +++    
Sbjct: 126 KALTKWRSTAREAGKQSRRVRFPEVADAMTTKQVAALLAGADFAGVLHEDRDHDSTPLAT 185

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             +     + +++GPEGG   +E           P  LG  +LR+
Sbjct: 186 AELPAEGTIVLVVGPEGGVSPQELTAFAEAG-ARPYRLGRSVLRT 229


>gi|269114999|ref|YP_003302762.1| hypothetical protein MHO_2250 [Mycoplasma hominis]
 gi|268322624|emb|CAX37359.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114]
          Length = 220

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 92/236 (38%), Gaps = 20/236 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F +           S +   +   VLR  + +NI++ N ++  +  +  +   +  
Sbjct: 1   MYKFFANK--LEDGIFYFSDEIQKH-FKVLRFNK-ENIIV-NYENKFYECQFVFPNSAKL 55

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
            K      +      +      IK N  +  +QK+VE+G   I    ++Y   ++     
Sbjct: 56  VK--ELDINNELDYKLCVAIPLIKQNHFEIALQKAVELGAYEIYVFQSQYVDKSNLNFDS 113

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
              R       A +Q     +P ++ P +   L    D   +++  +    +E       
Sbjct: 114 KKQRYEKIIFEACQQSFRNYIPRLHDPISFSELC-VLDIKNKVLAYENKKNNE------- 165

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            I    +  I++GPEGG+  +E +   S   V  +SL   ILR++TA +  ++ + 
Sbjct: 166 LIKDCQDALIIVGPEGGFSQQEIDYAISCN-VQVVSLTKTILRAETALIYMLSKLN 220


>gi|297243344|ref|ZP_06927277.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis
           AMD]
 gi|296888591|gb|EFH27330.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis
           AMD]
          Length = 265

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 91/240 (37%), Gaps = 18/240 (7%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
                     +    +R+ EGD + L +GK     +K++ V   +  +VE  +R   + +
Sbjct: 27  TIALPSQVKRHAISAMRLLEGDALQLSDGKGLRIHAKVTDVENGL-VRVEAFTREAPRMT 85

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYTISAAEQ 137
            +  + +  KT   +  I  + ++G+  + P     +  +      D R      SA EQ
Sbjct: 86  RLALVQALAKTGHDEQAIDMATQIGVDEVIPWCADRSIAKWKPGRTDKRWSQVLQSATEQ 145

Query: 138 CDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLEKL--------HAI 184
                +P +    + + ++          N  IV   +     N +E+            
Sbjct: 146 SRRAWMPELQECVSSKQIVAICRRACVYGNLVIVLHQDATDCWNQIEQAVNTLSERCLED 205

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                + +L+GPEGG   +E          + + LG  ILR+ TA   A++L+  + G +
Sbjct: 206 GKERTIYVLVGPEGGISDDEVSMFIDAGAKSCV-LGSNILRASTAGPVALSLLSRVLGRY 264


>gi|317153253|ref|YP_004121301.1| hypothetical protein Daes_1541 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943504|gb|ADU62555.1| protein of unknown function DUF558 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 246

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 17/251 (6%)

Query: 4   HSHLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
            + L          P  +    + SG + H++  VLR      + LF+G     L K+  
Sbjct: 1   MARLNSFHHPAQGWPSAVGETVRFSGAEAHHMLAVLRTAPDQIVRLFDGLGRVGLFKVQK 60

Query: 61  VGKSIRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVE---MGMGAIRPVITRY 116
             ++          S   Q   V       K+ R DY+ +K VE   +G+          
Sbjct: 61  TDRNTALLEAVSLESHPAQDTGVTLAIGWGKSKRRDYLFEKLVELQGLGVA---FWSAAR 117

Query: 117 TQNTHYN--MDRVRTYTISAAEQCDILTLPFIY-PPTTLEFLLKNWDHNCQIVFADETCG 173
           +Q    +   +  R   + AA+QC    LP I   P  L  LL       +   A E+  
Sbjct: 118 SQGQMPDTPKESWRDKCVQAAKQCGNPLLPTITVLPAGLGGLLDFARGFDRCYVAWESDE 177

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           ++  L    A        I+IGPEGG   +E   L    FV P++LG  ILR +TAA   
Sbjct: 178 ADRPL--TPADLSCGTSLIVIGPEGGLEHDEALALLEGGFV-PVTLGQSILRWETAATYC 234

Query: 234 MAL-VQAICGD 243
           ++L   A  GD
Sbjct: 235 LSLGWFARQGD 245


>gi|307330999|ref|ZP_07610130.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu
           4113]
 gi|306883385|gb|EFN14440.1| protein of unknown function DUF558 [Streptomyces violaceusniger Tu
           4113]
          Length = 247

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 15/227 (6%)

Query: 11  FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65
           FV   L       +    G +  +   V R++ G+ ++L +G        ++ V     +
Sbjct: 6   FVADSLAGAAAGARVWLEGPEGRHAVSVRRLRVGEPVVLTDGHGTGVQGTVAAVEGKDRL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
           +  V+   +       +  + +  K +R +  ++   E G+ A+ P            + 
Sbjct: 66  QIAVDEVRQEAAPDPRITVVQALPKGDRGELAVETMTETGVDAVVPWSASRCITQWKGER 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + R+    A +Q   LT P +    T + +              E  G   +  
Sbjct: 126 GLKALGKWRSTAREAGKQSRRLTFPEVPDAMTTKQVALLLAEAAFAAVLHEEGGEPLASA 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           +L A      + +++GPEGG   EE           P  LGP +LR+
Sbjct: 186 QLPA---RGEIVLVVGPEGGVSPEELAAFAEAG-ARPYRLGPSVLRT 228


>gi|283783329|ref|YP_003374083.1| RNA methyltransferase, RsmE family [Gardnerella vaginalis 409-05]
 gi|298252732|ref|ZP_06976526.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis
           5-1]
 gi|283442186|gb|ADB14652.1| RNA methyltransferase, RsmE family [Gardnerella vaginalis 409-05]
 gi|297533096|gb|EFH71980.1| 16S ribosomal RNA methyltransferase RsmE [Gardnerella vaginalis
           5-1]
          Length = 265

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 18/240 (7%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
                     +    +R+ EGD + L +GK     +K++ V   +  +VE  +R   + +
Sbjct: 27  TITLPSQVKRHAISAMRLLEGDALQLSDGKGLRIHAKVTDVENGL-VRVEAFTREAPRMT 85

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYTISAAEQ 137
            +  + +  KT   +  I  + ++G+  + P     +  +      D R      SA EQ
Sbjct: 86  RLALVQALAKTGHDEQAIDMATQIGVDEVIPWCADRSIAKWKPGRTDKRWSQVLQSATEQ 145

Query: 138 CDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLEKL--------HAI 184
                +P +    + + ++          N  IV   +     N +E+            
Sbjct: 146 SRRAWMPELQECVSSKQIVAICRRACVYGNLVIVLHQDATDCWNQIEQAVNTLSERCLED 205

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                V +L+GPEGG   +E          + + LG  ILR+ TA   A++L+    G +
Sbjct: 206 GKERTVYVLVGPEGGISDDEVSMFIDAGAKSCV-LGSNILRASTAGPVALSLLSRALGRY 264


>gi|182438789|ref|YP_001826508.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326779444|ref|ZP_08238709.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces cf.
           griseus XylebKG-1]
 gi|178467305|dbj|BAG21825.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326659777|gb|EGE44623.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces cf.
           griseus XylebKG-1]
          Length = 247

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 9/224 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69
           FV   +    +    G +  +   V R++ G++++L +G        +       R  V 
Sbjct: 6   FVVERMPTGPEFVLEGPEGRHAVSVKRLQPGEDVVLTDGLGHWAEGVVRAAEGKDRLTVT 65

Query: 70  -EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHY 122
                        +  + +  K +R +  ++   E G+ AI P                 
Sbjct: 66  GLGVHEEPAPDPRITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWRGDRGAK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + + R+    A +Q   +  P +    T   +              E    +++     
Sbjct: 126 ALSKWRSTAREAGKQSRRVRFPEVAEAMTTRQVAALLAAADFAAVLHEDRDHDSTPLATA 185

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
            +    ++ +++GPEGG   +E           P  LG  +LR+
Sbjct: 186 ELPAGGSIVLVVGPEGGVSPQELAAFAEAG-ARPYRLGRSVLRT 228


>gi|298715395|emb|CBJ28006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 301

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 120/298 (40%), Gaps = 92/298 (30%)

Query: 36  LRMKEGDNILLFNGKDGEWLSKISY--------------------------------VGK 63
           +R+++G+ + +F+G +GE+L+ ++                                   K
Sbjct: 1   MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEK 60

Query: 64  SIRFKVEYQSRSQTKQ-------------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110
            I  +VE  +R Q                 +++ +F+PI+  RL  +++K+VE+G   + 
Sbjct: 61  VIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLT 120

Query: 111 PVITRYTQNTHYN----MDRVRTY-TISAAEQCDILTLPFIYPPTTLEFLLKNWD----- 160
           PV+T  TQ    +    +DR+     + AAEQC+ +T+P +  P TL   L++ +     
Sbjct: 121 PVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSS 180

Query: 161 -------------------HNCQIVFADETCGSENSLEKLHAIAHI-------------- 187
                               +   V  +    +   LE L                    
Sbjct: 181 CDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSD 240

Query: 188 ----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                N A LIGPEGG+  +E  TL   PFV  +SLG  +LR++TAAV A++   A  
Sbjct: 241 DNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFW 298


>gi|314931976|gb|EFS95807.1| RNA methyltransferase, RsmE family [Propionibacterium acnes
           HL067PA1]
          Length = 246

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRS 75
              +  + +  + H+   V R++ G+ +L+ +G+        I     S+  +      +
Sbjct: 14  VPGSVVEITDAEGHHAGSVRRIRVGETVLVTDGQGHAVRGPAIEVTKGSVSVETVEILHT 73

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHYNMDRVRT 129
                    + +  K++R +  +    EMG+  I      R ++          + R + 
Sbjct: 74  PATTHRWVAVQALPKSDRAELAVATLTEMGVHEILAWQADRSIVRWKGDKQAKGVARWQA 133

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               A +Q     +P +    T E + +  +     V  +    SE  +     +     
Sbjct: 134 AAREATKQSRRFLVPQVELAQTREVVKRICNAQAAYVLHE--SASEPLVH--QELPASGE 189

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           V  ++GPEGG  S+E E   +     P+++   +LR+ TA V  +A ++A
Sbjct: 190 VIFIVGPEGGITSQEVEAFVAAG-ARPVTVWDGVLRTSTAGVVGLAQLRA 238


>gi|329946944|ref|ZP_08294356.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526755|gb|EGF53768.1| RNA methyltransferase, RsmE family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 270

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 21/246 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQS 73
            T    +G +  +   V R++  + + L +G     L +++  G       +  +V  + 
Sbjct: 25  GTVLMLTGPEARHAVTVKRLRAEERVDLVDGVGLRLLCEVTGAGVGGAKDCLAVRVLERV 84

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRV 127
                   +  + +  K  R +  ++ + E+GMG + P                    R 
Sbjct: 85  EEPEPSLRLTLVQALAKGGRDEQAVETATEVGMGLVLPWQAERCVSIWQAAKQAKGRQRW 144

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADET-CGSENSLEKL 181
           +   + AA+Q     +P +        L+       +     +V  +E      N++E +
Sbjct: 145 QATALQAAKQARRARVPEVDEARDTRRLVDWVGQTVRGGGVVLVLHEEAMTPISNAMESV 204

Query: 182 HAIAHIPN---VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
              A       +A+++GPEGG   EE   L +   +T + LGP ++R+ +A   A+A++ 
Sbjct: 205 RLPASGEASLVLAVVVGPEGGISPEETAALEAAGAMT-VRLGPHVMRTASAGPVALAVLA 263

Query: 239 AICGDW 244
              G W
Sbjct: 264 HASGLW 269


>gi|189501155|ref|YP_001960625.1| 16S ribosomal RNA methyltransferase RsmE [Chlorobium
           phaeobacteroides BS1]
 gi|189496596|gb|ACE05144.1| protein of unknown function DUF558 [Chlorobium phaeobacteroides
           BS1]
          Length = 248

 Score =  154 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 101/250 (40%), Gaps = 37/250 (14%)

Query: 10  LFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            +                G+++ ++  VLR KE + I + +G      ++I+ +G++ + 
Sbjct: 4   FYTPSDRIDLSGGALTVEGEEFFHITKVLRKKEREVIHITDGMGLSVTAEITKIGRNGLT 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
             V  + +     ++V    S +K+  R D+ ++K+ E+G+  I P+IT  T      + 
Sbjct: 64  AAVTEKKKVLPPSAEVTVALSLLKSSQRFDFFLEKATELGVAGIVPMITERTVSQPKAEK 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               ++R +   +SAA Q      P I  P   + +LK   ++ +++  + +  + +   
Sbjct: 124 RARKLERWKKVVVSAALQTKRYHFPEITAPLHFDAVLKREGYDSKLIACETSSIAPDV-- 181

Query: 180 KLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
                     V  L+                     E      F   +S G  ILR++TA
Sbjct: 182 ----SFFGRKVLFLVGGEGGFTGEE----------LEMAVKKGFCE-ISFGHSILRAETA 226

Query: 230 AVAAMALVQA 239
            + A+A+ +A
Sbjct: 227 GIFAVAMARA 236


>gi|154248861|ref|YP_001409686.1| 16S ribosomal RNA methyltransferase RsmE [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152797|gb|ABS60029.1| protein of unknown function DUF558 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 225

 Score =  154 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 15/215 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
                    +  ++  V+R+KEG+ +   +G  G++   I  +GK+  +           
Sbjct: 11  NDSVYFDEHEVTHM-KVMRLKEGEIVEATDGNGGKYKVIIKSIGKNEAYGNVLSYEFVEV 69

Query: 79  QSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAE 136
            ++   +F+P  +  RL + I+K+VE+G+  I                D++      A++
Sbjct: 70  TNNKLVLFAPSGRWERLRWTIEKAVELGVDEIYVFNNERASRHYDDKQDKLELIVREASK 129

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC     P I P   L+      +    + F         S           +V I+ GP
Sbjct: 130 QCVRYHFPTIKPIEFLDIFSLAPESTYILDFKGRKIPKRIS----------KSVGIIAGP 179

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           EGG+   E + L S      + LG +ILR +TA +
Sbjct: 180 EGGFSKSELKLLKSK--FKSICLGKKILRFETAII 212


>gi|166365923|ref|YP_001658196.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843]
 gi|166088296|dbj|BAG03004.1| hypothetical protein MAE_31820 [Microcystis aeruginosa NIES-843]
          Length = 157

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 85  IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDRVRTYTISAAEQCDILT 142
           + +  K    D +++ + E+G+  I P++T       +   +DR R     A EQ +   
Sbjct: 1   MVAIPKNG-FDDIVRAATELGVYRIIPLLTERGLVNPSPQKIDRWRKIAREAVEQSERQI 59

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I  P     +L          +   T  + + L  L  +     + + IGPEGG+  
Sbjct: 60  IPIIEEPQPFLAILNRGVSPGTTCYIGVTRRTVDPL--LSQLQTSTEITMAIGPEGGWTE 117

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
            E E   +  F+ P+SLG RILR+ TA + A+A++ A  
Sbjct: 118 AEIEQAIAADFL-PVSLGKRILRTITAPLVALAIINAYL 155


>gi|66361363|pdb|1Z85|A Chain A, Crystal Structure Of A Predicted Rna Methyltransferase
           (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
           Resolution
 gi|66361364|pdb|1Z85|B Chain B, Crystal Structure Of A Predicted Rna Methyltransferase
           (Tm1380) From Thermotoga Maritima Msb8 At 2.12 A
           Resolution
          Length = 234

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 18/223 (8%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
               +      + H+   V+R+KEGD I   +G    +   +  + K        +   +
Sbjct: 21  AQNGEVIFDEREAHH-XRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEK 79

Query: 77  TKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISA 134
            K+   +        +  R  ++I+K VE+G+  I       +Q    ++D+ +     A
Sbjct: 80  EKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISLDKAKIVVREA 138

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           A+QC     P +         L+  + +  ++  D    S+N L+         ++ +++
Sbjct: 139 AKQCKRYLFPKVS-------FLEKLEFSGNVITLD-LDASQNLLDANLE----GSITVVV 186

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           GPEGG+  +E+E L S    T +SLG +ILR +TAA+  +  +
Sbjct: 187 GPEGGFSEKERELLRSS--TTIVSLGKKILRFETAAILTVGYI 227


>gi|325677133|ref|ZP_08156802.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325552118|gb|EGD21811.1| 16S rRNA m3U1498 methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 253

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 17/247 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            ++D    +       G +  + A V R+K G+ +LL +G+ G   + ++  GK  +  +
Sbjct: 6   FYLDPLPDVGRPAVLDGPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKDRLDLE 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +   Q     V  + +  K  R +  ++ + E G+  + P  +            H 
Sbjct: 66  VTARLDQQPPTPQVTLVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-----VFADETCGSENS 177
            + R R   I+AA+Q     +P +      + +L+             V  +       S
Sbjct: 126 GVTRWRNAAIAAAKQARRSFVPEVADLHHTQQVLERVREVVGRGGVVAVLHESAKSPFAS 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     +   P V +++GPEGG   +E     +    T + LGP +LR+ TAA  A+  +
Sbjct: 186 LP----LRDAPEVMLVVGPEGGLSDDEIAA-LTGAGATAVLLGPTVLRTSTAAAVALGAI 240

Query: 238 QAICGDW 244
             +   W
Sbjct: 241 GVLTDRW 247


>gi|217076608|ref|YP_002334324.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho africanus
           TCF52B]
 gi|217036461|gb|ACJ74983.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 226

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 105/238 (44%), Gaps = 18/238 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +  LF  F +           +  ++  V R KE D I   +GK   +  KI+ +GK   
Sbjct: 1   MPNLF--FGIKEDNNLIFDEHETVHIKTV-RKKENDIIECTDGKGYYYKVKITQIGKKKS 57

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-N 123
           F   +E +     +++ +       +  RL ++I+KSVE+G+  I    T ++   +   
Sbjct: 58  FGEILESKYIENNEKTFLSLFAPASRWERLRWLIEKSVELGVDNIYITKTAFSNRDYKDK 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++++      +A+QC     P +    T + +      N   +        + + +KL A
Sbjct: 118 VEKINMVIRDSAKQCVRFHFPNVD-FITFKNIKNYATKNTYFL--------DFNGQKLPA 168

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                +V+I++GPEGG+  EE + L S      + LG +ILR +TAA  A++    + 
Sbjct: 169 NIDG-DVSIIVGPEGGFSKEELDFLFSN--FNAIRLGNKILRFETAAFVALSYFAIVL 223


>gi|308375866|ref|ZP_07445358.2| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377996|ref|ZP_07481181.2| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis
           SUMu009]
 gi|308344953|gb|EFP33804.1| hypothetical protein TMGG_00932 [Mycobacterium tuberculosis
           SUMu007]
 gi|308353884|gb|EFP42735.1| hypothetical protein TMIG_01048 [Mycobacterium tuberculosis
           SUMu009]
          Length = 259

 Score =  153 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            GD+  + A V R++ G+ ++L +G        +   G+  +R +
Sbjct: 3   FYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 62

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +      +  V  + +  K+ R +  I+ + E G  A                    
Sbjct: 63  VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 122

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177
            + R R    SAA Q     +P +    +   L++            +V  +E       
Sbjct: 123 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 182

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +    A A   ++ +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 183 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTST 228


>gi|218296339|ref|ZP_03497082.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23]
 gi|218243133|gb|EED09664.1| protein of unknown function DUF558 [Thermus aquaticus Y51MC23]
          Length = 228

 Score =  153 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 14/213 (6%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
                G    ++  +L  VLR   GD   +F+ +  E L+++  +G  +R+++  + R +
Sbjct: 8   SPGLTGVLPLEEGRHLVEVLRAGVGDRFTVFD-ESREALAEVVDLGPPVRYRILEERRPE 66

Query: 77  TKQ-SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT---QNTHYNMDRVRTYTI 132
            +   +V    + +K ++L  +++ + E+G   I+P+ITR++   +     + R++    
Sbjct: 67  REVGVEVVLYVALLKGDKLSEVVRAATELGATKIQPLITRHSVPKEMGEGKLRRLKAIAK 126

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            AA+Q   L +P + PP  L+ +    +    +V      G+   + ++  +    N+++
Sbjct: 127 EAAKQSGRLRVPEVLPPIPLKAV---PEVEQGLVAH---VGARALVREV--LDPNRNLSL 178

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +GPEGG+  EE   L    F  P+SLG RILR
Sbjct: 179 AVGPEGGFAEEEVALLEERGFA-PVSLGRRILR 210


>gi|313673214|ref|YP_004051325.1| hypothetical protein Calni_1254 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939970|gb|ADR19162.1| protein of unknown function DUF558 [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 233

 Score =  153 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 15/229 (6%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKS 64
            LKR ++D  L    + +   D YH++ +VLR K GD  +  N  + GE+      + +S
Sbjct: 4   KLKRFYIDKDLT--DEIEIDEDMYHHIKNVLRTKIGDKFIFINDSEVGEYQF-YFGMKRS 60

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN- 123
             F +  +   +     +      ++    D +++K  E+G+  + PVIT+ +  T  N 
Sbjct: 61  GIFTLNNKKSHEILDYKLNVYLGILQREYFDTVMEKLGEIGVTNVIPVITKRSIQTVNNN 120

Query: 124 -MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R++   I  A Q +   LP +     +  +  N D+N       E   S+N +E   
Sbjct: 121 TVERIKKLLIKGALQAEHDFLPSLDAVLNISEITPNTDNN---FLLYERKESKNRMEI-- 175

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                 +V+++IGPEGG+  +E E L    FV P+S    +L+++TAA+
Sbjct: 176 ---GSKSVSLVIGPEGGFEEDEIELLSDKGFV-PVSPIKGVLKAETAAL 220


>gi|15609509|ref|NP_216888.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis H37Rv]
 gi|15841884|ref|NP_336921.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis CDC1551]
 gi|31793549|ref|NP_856042.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis
           AF2122/97]
 gi|121638251|ref|YP_978475.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662204|ref|YP_001283727.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis H37Ra]
 gi|148823574|ref|YP_001288328.1| hypothetical protein TBFG_12397 [Mycobacterium tuberculosis F11]
 gi|167968750|ref|ZP_02551027.1| hypothetical protein MtubH3_12215 [Mycobacterium tuberculosis
           H37Ra]
 gi|215404298|ref|ZP_03416479.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis
           02_1987]
 gi|215412118|ref|ZP_03420882.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431312|ref|ZP_03429231.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis
           EAS054]
 gi|215446615|ref|ZP_03433367.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T85]
 gi|218754100|ref|ZP_03532896.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|219558363|ref|ZP_03537439.1| 16S rRNA m3U1498 methyltransferase [Mycobacterium tuberculosis T17]
 gi|224990745|ref|YP_002645432.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798551|ref|YP_003031552.1| hypothetical protein TBMG_01603 [Mycobacterium tuberculosis KZN
           1435]
 gi|254365148|ref|ZP_04981194.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551419|ref|ZP_05141866.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187375|ref|ZP_05764849.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201496|ref|ZP_05768987.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis T46]
 gi|289443893|ref|ZP_06433637.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448014|ref|ZP_06437758.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553839|ref|ZP_06443049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570515|ref|ZP_06450742.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289746150|ref|ZP_06505528.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289754477|ref|ZP_06513855.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289758494|ref|ZP_06517872.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762538|ref|ZP_06521916.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994523|ref|ZP_06800214.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis 210]
 gi|297634973|ref|ZP_06952753.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis KZN 4207]
 gi|297731966|ref|ZP_06961084.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis KZN R506]
 gi|298525853|ref|ZP_07013262.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776638|ref|ZP_07414975.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis
           SUMu001]
 gi|306780410|ref|ZP_07418747.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis
           SUMu002]
 gi|306785160|ref|ZP_07423482.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789520|ref|ZP_07427842.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis
           SUMu004]
 gi|306793846|ref|ZP_07432148.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis
           SUMu005]
 gi|306798242|ref|ZP_07436544.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis
           SUMu006]
 gi|306804119|ref|ZP_07440787.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis
           SUMu008]
 gi|306972749|ref|ZP_07485410.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis
           SUMu010]
 gi|307080454|ref|ZP_07489624.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis
           SUMu011]
 gi|307085049|ref|ZP_07494162.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659300|ref|ZP_07816180.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis KZN V2475]
 gi|54040530|sp|P67203|RSME_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|54042959|sp|P67202|RSME_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|2078027|emb|CAB08467.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13882151|gb|AAK46735.1| conserved hypothetical protein TIGR00046 [Mycobacterium
           tuberculosis CDC1551]
 gi|31619142|emb|CAD97254.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493899|emb|CAL72374.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150662|gb|EBA42707.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506356|gb|ABQ74165.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148722101|gb|ABR06726.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773858|dbj|BAH26664.1| hypothetical protein JTY_2380 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320054|gb|ACT24657.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416812|gb|EFD14052.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420972|gb|EFD18173.1| ribosomal RNA small subunit methyltransferase E [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438471|gb|EFD20964.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289544269|gb|EFD47917.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686678|gb|EFD54166.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289695064|gb|EFD62493.1| 16S rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289710044|gb|EFD74060.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289714058|gb|EFD78070.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495647|gb|EFI30941.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214955|gb|EFO74354.1| hypothetical protein TMAG_02930 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326731|gb|EFP15582.1| hypothetical protein TMBG_00915 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330144|gb|EFP18995.1| hypothetical protein TMCG_00471 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334005|gb|EFP22856.1| hypothetical protein TMDG_00849 [Mycobacterium tuberculosis
           SUMu004]
 gi|308337786|gb|EFP26637.1| hypothetical protein TMEG_02738 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341467|gb|EFP30318.1| hypothetical protein TMFG_01335 [Mycobacterium tuberculosis
           SUMu006]
 gi|308349264|gb|EFP38115.1| hypothetical protein TMHG_01565 [Mycobacterium tuberculosis
           SUMu008]
 gi|308357829|gb|EFP46680.1| hypothetical protein TMJG_00641 [Mycobacterium tuberculosis
           SUMu010]
 gi|308361775|gb|EFP50626.1| hypothetical protein TMKG_00634 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365397|gb|EFP54248.1| hypothetical protein TMLG_02120 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719038|gb|EGB28186.1| hypothetical protein TMMG_01663 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903988|gb|EGE50921.1| hypothetical protein TBPG_01877 [Mycobacterium tuberculosis W-148]
 gi|328458319|gb|AEB03742.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 262

 Score =  153 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            GD+  + A V R++ G+ ++L +G        +   G+  +R +
Sbjct: 6   FYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +      +  V  + +  K+ R +  I+ + E G  A                    
Sbjct: 66  VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177
            + R R    SAA Q     +P +    +   L++            +V  +E       
Sbjct: 126 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +    A A   ++ +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 186 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTST 231


>gi|38234290|ref|NP_940057.1| hypothetical protein DIP1719 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200553|emb|CAE50248.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 252

 Score =  153 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 12/232 (5%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS-IRFKVEYQSRSQTK 78
                G +  +   V RM  G+ I L +G+ G   + ++   GKS +  +V   +   T 
Sbjct: 25  NVVLDGAEGRHAVSVKRMTAGEQIKLIDGRGGWATATVASTSGKSTLNLQVFECNEEATP 84

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTI 132
              V    +  K+ R +  +    + G  AI P                  + + +   I
Sbjct: 85  TPTVTVFQAIPKSERSELAVDLLTQGGADAIVPWEAHRCVAKWVGAKRSKGVLKWQQAAI 144

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           +AA+Q     +P I  P T   + +  +    ++   E             ++   ++A+
Sbjct: 145 AAAKQSRRTRIPEIAEPMTTAQIAEQLEQFDVVLVLHEDAA---VPFATVDVSTAKSIAL 201

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +IGPEGG   +E E          + LGP +LR+ +A + A+A +      W
Sbjct: 202 IIGPEGGVSPDEAEAFRKAG-ARAVKLGPEVLRTASAGIVALAALGVQTSRW 252


>gi|162447807|ref|YP_001620939.1| hypothetical protein ACL_0953 [Acholeplasma laidlawii PG-8A]
 gi|161985914|gb|ABX81563.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A]
          Length = 227

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 17/225 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F+D       + K   D  H++ +V+R K G  + +  G  G +L+ +    K + 
Sbjct: 1   MQRYFLDH------KNKIDKDDVHHILNVMRFKSGTVVEVC-GISGCYLATLEIQHKEVG 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHY 122
           F +  +        +V  +    K +++D + + +      +I  V  + +     N  +
Sbjct: 54  F-LTTEKLDDNPPLNVTIVQGLPKGDKMDTVTKYATLFQAKSIIFVAMKRSIAKLSNVDH 112

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R+      AAE     TLP I     L+ +        Q+V  DE     N  + + 
Sbjct: 113 KLSRLNKIAKEAAELSKRSTLPHIQLLENLKDI---NTDGKQLVLLDELERVYNIKDFIK 169

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
              +  ++ +++GPEGG    E+  L     +T +SLG  IL ++
Sbjct: 170 DHGN-KDLIVIVGPEGGIDETERNALVERGAIT-VSLGQSILPTE 212


>gi|305681207|ref|ZP_07404014.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659412|gb|EFM48912.1| RNA methyltransferase, RsmE family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 239

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++      P  +    + +GD+  +   V R   G+ I L +G     +  ++ V    R
Sbjct: 1   MQEF--PTPPTVGKVIELTGDEGRHAVSVKRTSVGEQIELVDGHGTRAVITVTGVSGKDR 58

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               V+  +     +  V  + +  K  R +  +    + G   I P      +  + + 
Sbjct: 59  LVGVVDCVASEPAPRPTVTVVQALPKAARSELTVDLLTQAGADVIVPWQAGRSVANWGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSL 178
               + + R    +AA+Q     +P I P      ++         ++  ++  G     
Sbjct: 119 QDKGLAKWRAAARAAAKQSRRSRIPEITPVADQAAVVALIQAAPLALMLHEDATGKITD- 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                +A + +V ++IGPEGG    E +   +     P+ LGP +LR+ +A + A+A + 
Sbjct: 178 ---QPVAQVDSVVLIIGPEGGISPAELDAFTAAG-AHPVRLGPEVLRTASAGMVALAALG 233

Query: 239 AICGDW 244
           A+   W
Sbjct: 234 AVTDRW 239


>gi|312140293|ref|YP_004007629.1| RNA methyltransferase [Rhodococcus equi 103S]
 gi|311889632|emb|CBH48949.1| putative RNA methyltransferase [Rhodococcus equi 103S]
          Length = 253

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 17/247 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            ++D    +       G +  + A V R+K G+ +LL +G+ G   + ++  GK  +  +
Sbjct: 6   FYLDPLPDVGRPTVLDGPEGRHAATVRRIKPGERLLLADGRGGLADAVVTAAGKDRLDLE 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +   Q     V  + +  K  R +  ++ + E G+  + P  +            H 
Sbjct: 66  VTARLDQQPPTPQVTLVQALPKAERSELAVELATEAGIDVVVPWQSSRCVARWEGAKIHK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-----VFADETCGSENS 177
            + R R   I+AA+Q     +P +      + +L+             V  +       S
Sbjct: 126 GVTRWRNAAIAAAKQARRSFVPEVADLHHTQQVLERVREVVGRGGVVAVLHESAKSPFAS 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     +   P V +++GPEGG   +E     +    T + LGP +LR+ TAA  A+  +
Sbjct: 186 LP----LRDAPEVMLVVGPEGGLSDDEIAA-LTGAGATAVLLGPTVLRTSTAAAVALGAI 240

Query: 238 QAICGDW 244
             +   W
Sbjct: 241 GVLTDRW 247


>gi|21221011|ref|NP_626790.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces coelicolor
           A3(2)]
 gi|256787825|ref|ZP_05526256.1| 16S ribosomal RNA methyltransferase RsmE [Streptomyces lividans
           TK24]
 gi|289771712|ref|ZP_06531090.1| RNA methyltransferase [Streptomyces lividans TK24]
 gi|6714766|emb|CAB66230.1| conserved hypothetical protein SCC77.19c [Streptomyces coelicolor
           A3(2)]
 gi|289701911|gb|EFD69340.1| RNA methyltransferase [Streptomyces lividans TK24]
          Length = 249

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 14/222 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY- 71
              L    +    G +  +   V R++ G++++L +G+       +       R  V   
Sbjct: 13  PQDLPAG-EYVLDGPEGRHAVSVKRLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVP 71

Query: 72  --QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYN 123
                   +Q  +  + +  K +R +  ++   E+G+ AI P            +     
Sbjct: 72  GGVREEPAEQPRITVVQALPKGDRGELAVETMTEVGVDAIVPWAASRCITQWKGERGLKA 131

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           + + R     A +Q   +  P +    + + +              E+     S  +L A
Sbjct: 132 LGKWRATAREAGKQSRRVRFPDVADAASSKQVASLLAAADFAAVLHESGDVPLSDAELPA 191

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                ++ +++GPEGG   +E           P  LG  +LR
Sbjct: 192 S---GDIVLVVGPEGGVSPDELALFAEAG-ADPYRLGRSVLR 229


>gi|134098067|ref|YP_001103728.1| protein involving differentiation [Saccharopolyspora erythraea NRRL
           2338]
 gi|291007474|ref|ZP_06565447.1| protein involving differentiation [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910690|emb|CAM00803.1| protein involving differentiation [Saccharopolyspora erythraea NRRL
           2338]
          Length = 245

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSD 81
             SG +  + A V R+  G+ +LL +G+ G     ++   + S+   VE           
Sbjct: 18  ALSGPEGRHAATVRRIGVGEQLLLSDGRGGMARCSVTSTARDSLELDVEESWLVPRPALR 77

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHYNMDRVRTYTISA 134
           V+   + +K +R +  ++ + E G+  + P                   + R R+    A
Sbjct: 78  VRLAQALVKGDRGELAVELATEAGVDGVLPWKAARCVARWDDGPRGAKALGRWRSTVAQA 137

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
           A+Q      P +  P T   L +        V   E+  +   L  +   A    + +++
Sbjct: 138 AKQARRPWTPEVGEPVTTRQLSRVVAEADAAVVLHESAST--PLASVDLPAEGE-LVLVV 194

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           GPEGG   +E   L        + LGP +LR+ T
Sbjct: 195 GPEGGVGEDELAVLTEAG-AQAVRLGPSVLRAST 227


>gi|58697158|ref|ZP_00372581.1| surface protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536534|gb|EAL59900.1| surface protein [Wolbachia endosymbiont of Drosophila simulans]
          Length = 182

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 9/186 (4%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             +  ++ Q  + ++    + +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           +   I AAEQ   +++P I PP     L  +   N   V  DET  ++  L         
Sbjct: 125 KLQAIEAAEQSGRISIPEILPPINFCELPDSQSKN--FVLCDETGKADKVL------KGK 176

Query: 188 PNVAIL 193
            NVAI+
Sbjct: 177 KNVAII 182


>gi|225021770|ref|ZP_03710962.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945466|gb|EEG26675.1| hypothetical protein CORMATOL_01798 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 239

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 15/246 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++      P  +    + +GD+  +   V R   G+ I L +G     +  ++ V    R
Sbjct: 1   MQEF--PTPPTVGKVIELTGDEGRHAVSVKRTSVGEQIELVDGHGTRAVITVTGVSGKDR 58

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQN 119
               V+  +     +  V  + +  K  R +  +    + G   I P      +  + + 
Sbjct: 59  LVGVVDCVASEPAPRPTVTVVQALPKAARSELTVDLLTQAGADVIVPWQAGRSVANWGKK 118

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSL 178
               + + R    +AA+Q     +P I P      ++         ++  ++  G     
Sbjct: 119 QDKGLAKWRAAARAAAKQSRRSRIPEITPVADQAAVVALIQAAPLALMLHEDATGKITD- 177

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                +A + +V ++IGPEGG    E +   +     P+ LGP +LR+ +A + A+A + 
Sbjct: 178 ---QPVAQVDSVVLIIGPEGGISPAELDAFTAAG-ARPVRLGPEVLRTASAGMVALAALG 233

Query: 239 AICGDW 244
           A+   W
Sbjct: 234 AVTDRW 239


>gi|294629283|ref|ZP_06707843.1| RsmE family RNA methyltransferase [Streptomyces sp. e14]
 gi|292832616|gb|EFF90965.1| RsmE family RNA methyltransferase [Streptomyces sp. e14]
          Length = 293

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV---EYQSRS 75
             +    G +  +   V R++ G++++L +G        +       R  +   E     
Sbjct: 59  GGEFVLDGPEGRHAVSVKRLRPGEDVVLTDGHGRWAEGVVKAAEGKDRLVITDLESVVEE 118

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
             +Q  +  + +  K  R +  ++   E+G+ AI P                  + + R 
Sbjct: 119 PPEQPRITVVQALPKGERGELAVETMTEVGVDAIVPWQAARCITQWKGDRGLKALGKWRA 178

Query: 130 YTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
               A +Q   +  P +    T   +  LL   D    ++ +D   GSE        +  
Sbjct: 179 TAREAGKQSRRVRFPEVAETATTKQVAALLAKADFAA-VLHSDFEYGSEPLATA--ELPA 235

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
              + +++GPEGG  S+E            + LG  +LR+
Sbjct: 236 EGEIVLVVGPEGGVSSDELAQFREAGARAYV-LGRSVLRT 274


>gi|319947872|ref|ZP_08022059.1| 16S ribosomal RNA methyltransferase RsmE [Dietzia cinnamea P4]
 gi|319438478|gb|EFV93411.1| 16S ribosomal RNA methyltransferase RsmE [Dietzia cinnamea P4]
          Length = 261

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 15/222 (6%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRS 75
            +       G +  +    LR++ G+ I + +G+       ++      +  +V  +   
Sbjct: 9   AVGETVVLDGPEGRHAGSALRVRPGEAIRVGDGRGAVADCVVTTTSSGRVEAEVVTRVDV 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRT 129
                +V  + +  K+ R +  ++ + E G   I P                    +   
Sbjct: 69  PRPTPEVTVVQALPKSERSELAVELATEAGADRIVPWQADRCVSRWTGPKVDKGRTKWTN 128

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLEKLHAI 184
              +AA+Q      P I        L              +V  +E  G+    + + A 
Sbjct: 129 AARAAAKQSRRAWEPEIGDLVDSTALAALVAAEVEGGASALVLHEE--GAAGFADAVTAG 186

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                V +++GPEGG    E + L +     P+ LGP +LR+
Sbjct: 187 PTGERVLVVVGPEGGVSDAELDALTAAG-ARPVVLGPEVLRT 227


>gi|297199593|ref|ZP_06916990.1| ribosomal RNA small subunit methyltransferase E [Streptomyces
           sviceus ATCC 29083]
 gi|297147443|gb|EDY57513.2| ribosomal RNA small subunit methyltransferase E [Streptomyces
           sviceus ATCC 29083]
          Length = 292

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 10/225 (4%)

Query: 11  FVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRF 67
           FV+        +    G +  +   V R++ G++++L +G        +  +     +  
Sbjct: 50  FVEQTEPGTGGRYVLDGPEGRHAVSVKRLQPGEDVILTDGAGHWADCVVLGTEGKDRLIV 109

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +++  + +   Q  +  + +  K +R +  ++   E+G+ AI P            +   
Sbjct: 110 QLDSVNEAPDVQPRITVVQALPKGDRGELAVETMTEVGVDAIVPWQAARCITQWKGERGL 169

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + + R     A +Q   +  P I    T + +                    ++    
Sbjct: 170 KALGKWRATAREAGKQSRRIRFPDIADAATTKQVAALLAKADFAAVLHSDFERGSAPLAT 229

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             +     + +++GPEGG   +E            + LG  +LR+
Sbjct: 230 AELPDEGEIVLVVGPEGGVAKDELALFEEAGARAYV-LGSTVLRT 273


>gi|323697889|ref|ZP_08109801.1| protein of unknown function DUF558 [Desulfovibrio sp. ND132]
 gi|323457821|gb|EGB13686.1| protein of unknown function DUF558 [Desulfovibrio desulfuricans
           ND132]
          Length = 246

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 10/242 (4%)

Query: 4   HSHLKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
            + L   F+     P         SG +  ++  +LR +    + LF+G   + L  +  
Sbjct: 1   MARLNTFFLSPDQWPAVAGDVVVLSGPEARHMGTILRTERSQTVRLFDGHGRDGLFTVRD 60

Query: 61  VGKSIRFKVEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K+       +       +  +       K+ R DY+++K+VE+    +       +Q 
Sbjct: 61  IAKNRAELEALELAEHPASATGLTLAIGWGKSKRRDYLLEKTVELQGAGLIFWQAARSQG 120

Query: 120 THYN--MDRVRTYTISAAEQCDILTLPFIYPPTT-LEFLLKNWDHNCQIVFADETCGSEN 176
           +  +   +      + AA+QC  + LP +   +  ++ L+           A E   +  
Sbjct: 121 SLPDDPKETWTEKFVQAAKQCGAVWLPELDTVSGGVDGLIPLAGRFDHCYLAWEAEEAVT 180

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L  +  +       ++IGPEGG+  +E + L    F  P++LGP ILR +TAAV  ++L
Sbjct: 181 PLSPV--MLSKGRTLVVIGPEGGFDPDEADRLVRAGFG-PVTLGPSILRWETAAVYCLSL 237

Query: 237 VQ 238
             
Sbjct: 238 AM 239


>gi|260205673|ref|ZP_05773164.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium
           tuberculosis K85]
 gi|289575065|ref|ZP_06455292.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539496|gb|EFD44074.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 262

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            +VD            GD+  + A V R++ G+ ++L +G        +   G+  +R +
Sbjct: 6   FYVDILPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHY 122
           V  +      +  V  + +  K+ R +  I+ + E G  A                    
Sbjct: 66  VLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENS 177
            + R R    SAA Q     +P +    +   L++            +V  +E       
Sbjct: 126 GLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVD 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +    A A   ++ +++GPEGG   +E   L     V  + LGP +LR+ T
Sbjct: 186 I----AAAQAGSLMLVVGPEGGIAPDELAALTDAGAV-AVRLGPTVLRTST 231


>gi|256825015|ref|YP_003148975.1| hypothetical protein Ksed_11710 [Kytococcus sedentarius DSM 20547]
 gi|256688408|gb|ACV06210.1| conserved hypothetical protein TIGR00046 [Kytococcus sedentarius
           DSM 20547]
          Length = 253

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 17/248 (6%)

Query: 10  LFV-DFPLC-IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIR 66
           LFV D PL  +      +G++  + A V R+  G+ +L+ +G       ++    K  + 
Sbjct: 5   LFVADGPLAPVGGSLVLTGEEGRHAATVQRIAVGEQVLVTDGAGAGVRGEVLATAKDRLE 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
            +V  +      +  ++ + +  K+ R +  I+ SVE+G+  + P     +         
Sbjct: 65  LRVLEELAEPEPRPRLELVQALAKSGRAEQSIETSVEIGVDHVLPWEAERSISRWSGPKA 124

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENS 177
                +      +A +Q   L    +    +   L +  +   +   +        ++  
Sbjct: 125 AKGRAKWAGVVRAATKQSRRLREAEVAELVSSAGLARRIEEGAREGELTLVLHEVATDRL 184

Query: 178 LEKLHAI----AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           L  L  +       P V ++IGPEGG    E E         P+ LGP +LR+ +A   A
Sbjct: 185 LPVLTGLVGDGPVPPVVRVVIGPEGGISPRELELFTEAGG-HPVLLGPHVLRTSSAGPVA 243

Query: 234 MALVQAIC 241
           ++LV    
Sbjct: 244 LSLVAGAL 251


>gi|54023394|ref|YP_117636.1| 16S ribosomal RNA methyltransferase RsmE [Nocardia farcinica IFM
           10152]
 gi|54014902|dbj|BAD56272.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 246

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFK 68
            ++D            G +  + A V R + G+ I L +G+     S++    +  +  +
Sbjct: 6   FYLDDIPEPGRVAVLDGPEGRHAATVRRTRVGEPITLSDGRGLLAASEVVAAQRDRLELR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYN 123
           V  ++ +     +V  + +  K++R +  +    E G  AI P                 
Sbjct: 66  VLERTVAPRPAPEVTVVQALPKSDRSELAVDLMTEAGADAIVPWQAARCVANWEGKAAKG 125

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQIVFADETCGSENSLEK 180
           +++ R+   SAA Q     +P +        +L+          +V A    G+    E 
Sbjct: 126 VEKWRSAARSAARQSRRAYIPEVADLHRTRDVLELVRGARAEGAVVAALHESGTAKFTEL 185

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             + A    V +++GPEGG    E   L +      L LGP +LR+ T
Sbjct: 186 --SFAGASRVVLIVGPEGGLDDGELVALAAAGAQVTL-LGPTVLRTST 230


>gi|119025736|ref|YP_909581.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765320|dbj|BAF39499.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 265

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K+GD + L +G+     + +  V + I  +V    +
Sbjct: 21  ELNAGWRLTLPSSVRRHAIQAMRLKDGDELQLSDGRGLRIHAVLRDVQQGI-AEVLRFGK 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYT 131
                + +  + +  KT   +  I  + ++G+  + P     +  +      D + R   
Sbjct: 80  EPQPVTRLALVQALAKTGHDEQAIDMATQIGVDQVIPWQADRSIAKWKAGRTDKKWRQVL 139

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHA--- 183
            SA EQ      P +    T + ++      C      IV   +   +   LE   A   
Sbjct: 140 ESATEQSRRSWTPQLDDCVTSKQVVAICKRACVHGDMVIVLHQDATKTWEQLETGIAKLS 199

Query: 184 -----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                      + +L+GPEGG    E E          + LG  ILR+ TA   A++L+ 
Sbjct: 200 DTCLKDGRPRTIYVLVGPEGGISDAEVEAFTKAGAEVCV-LGSNILRASTAGPVALSLLA 258

Query: 239 AICGDW 244
              G +
Sbjct: 259 RALGRF 264


>gi|297626078|ref|YP_003687841.1| hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921843|emb|CBL56403.1| Hypothetical protein PFREUD_08770 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 249

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 11/221 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76
                   G +  + A V RM+ G+++L+ +G        I  V K S+  +V      +
Sbjct: 15  PGDVVLIEGPEGRHAATVKRMRVGESVLVADGAGAGLRGVIDSVAKNSVSVRVGELIARR 74

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-----QNTHYNMDRVRTYT 131
                   + +  K  R D  ++   E+G+  I       +           + + R+  
Sbjct: 75  PAALHTVAVQALAKGERSDIAVEAMTELGVDEIIAWQASRSIVRWEAKAEKGLAKWRSSA 134

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
            +A +Q     +P +    T   + +    +  +V  +E     + L    ++       
Sbjct: 135 RAATKQSRRFRIPQVSTAGTPGVVERLARADLALVLHEEATTPLSGL----SVPSAGECV 190

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            +IGPEGG   EE E          +SL   +LR+ TA V 
Sbjct: 191 FVIGPEGGISPEELEAFRGAG-ARLVSLSDAVLRASTAGVV 230


>gi|154487442|ref|ZP_02028849.1| hypothetical protein BIFADO_01294 [Bifidobacterium adolescentis
           L2-32]
 gi|154083960|gb|EDN83005.1| hypothetical protein BIFADO_01294 [Bifidobacterium adolescentis
           L2-32]
          Length = 289

 Score =  151 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K+GD + L +G+     + +    + I  +V    +
Sbjct: 45  ELNAGWRLTLPSSVRRHAIQAMRLKDGDELQLSDGRGLRIHAVLRDAQQGI-AEVLRFGK 103

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMD-RVRTYT 131
                + +  + +  KT   +  I  + ++G+  + P     +  +      D + R   
Sbjct: 104 EPQPVTRLALVQALAKTGHDEQAIDMATQIGVDQVIPWQADRSIAKWKAGRTDKKWRQVL 163

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHA--- 183
            SA EQ      P +    T + ++      C      IV   +   +   LE   A   
Sbjct: 164 ESATEQSRRSWTPQLDDCVTSKQVVAICKRACVHGDMVIVLHQDATKTWEQLETGIAKLS 223

Query: 184 -----IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                      + +L+GPEGG    E E          + LG  ILR+ TA   A++L+ 
Sbjct: 224 DTCLKDGRPRTIYVLVGPEGGISDAEVEAFTKAGAEVCV-LGSNILRASTAGPVALSLLA 282

Query: 239 AICGDW 244
              G +
Sbjct: 283 RALGRF 288


>gi|239931361|ref|ZP_04688314.1| 16S rRNA m3U1498 methyltransferase [Streptomyces ghanaensis ATCC
           14672]
 gi|291439732|ref|ZP_06579122.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342627|gb|EFE69583.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 246

 Score =  151 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQTK 78
           +    G +  +   V R++ G+ ++L +G       ++  +     +   +        +
Sbjct: 18  RYVLDGPEGRHAVSVKRLRAGEGVVLTDGAGRWAEGEVAGTEGKDRLVVALGDVVEEPAE 77

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTI 132
              +  + +  K +R +  ++   E+G+ AI P            +    ++ + R    
Sbjct: 78  SPRLTVVQALPKGDRGELAVETMTEVGVDAIVPWSAARCITQWKGERGLKSLAKWRATAR 137

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            A +Q   +  P +    T + ++             E+     +  +L A     ++ +
Sbjct: 138 EAGKQSRRVRFPEVAEVATTKQVVPLLAGAAFAAVLHESGTEPLATAELPAS---GDIVL 194

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
           ++GPEGG   EE E         P  LG  +L
Sbjct: 195 VVGPEGGISPEELELFAQAG-ARPYRLGRSVL 225


>gi|311064213|ref|YP_003970938.1| hypothetical protein BBPR_0820 [Bifidobacterium bifidum PRL2010]
 gi|310866532|gb|ADP35901.1| Conserved hypothetical protein with DUF558 domain [Bifidobacterium
           bifidum PRL2010]
          Length = 280

 Score =  151 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L              +    +R+ EGD + L +G+     + +    ++    VE   R 
Sbjct: 37  LNAGWTITLPASVKRHALGAMRLAEGDGLSLTDGRGLCVKTTLVDA-QAGLVSVERVGRQ 95

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYTI 132
               + +  I +  KT   +  I  + ++G+  + P     +  +      DR  R    
Sbjct: 96  PQPVTRLVLIQALAKTGHDEAAIDMATQIGVDEVIPWQANRSIAKWKAGRTDRKWRQVLD 155

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLE-------- 179
           +A EQ   +  P +    + + ++          +  IV   +   S +S+E        
Sbjct: 156 AATEQSRRVWSPELAQCVSSKQVVAICRRACVHGDLVIVLHQDATMSWSSVEDEVSRLAD 215

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +  A     ++ +++GPEGG   +E          + + LG  ILR+ TA   A++L+  
Sbjct: 216 RCLADGRPRSINVVVGPEGGISEQEVSDFVGAGAQSVV-LGSNILRASTAGPVALSLLSR 274

Query: 240 ICGDW 244
             G +
Sbjct: 275 ALGRF 279


>gi|255323732|ref|ZP_05364860.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           tuberculostearicum SK141]
 gi|255299222|gb|EET78511.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           tuberculostearicum SK141]
          Length = 252

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 27/236 (11%)

Query: 11  FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65
           F+   L           SG +  +   V RM EG+ + L +G        I+      S+
Sbjct: 6   FIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDSL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              V+    +      V  + +  K+ R +  +  + + G   I              + 
Sbjct: 66  EGTVDSIDTAPEPTPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW---------DHNCQIVFADE 170
               + + +    SAA+Q     +P +  P T   L++           +    +V  +E
Sbjct: 126 APKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLVQELTGRRDGASSNAPTVLVLHEE 185

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
              S      +  +    +V +L+GPEGG    E + L      TP+ LGP +LR+
Sbjct: 186 ATAS------IKDVPLTEDVVLLVGPEGGIGDAELDRLKEAG-ATPIKLGPEVLRT 234


>gi|157363096|ref|YP_001469863.1| 16S ribosomal RNA methyltransferase RsmE [Thermotoga lettingae TMO]
 gi|157313700|gb|ABV32799.1| protein of unknown function DUF558 [Thermotoga lettingae TMO]
          Length = 226

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 16/238 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK--S 64
           +  +F                +  +L  V+R+  G  + + +GK   +  ++  +GK  S
Sbjct: 1   MPHIFYGK--QTGDFVILDEHESRHL-RVIRVSVGQKLFVTDGKGNLYNCELIELGKLES 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                  +     K S +    +     RL ++++K+VE+G+  +    T+ ++      
Sbjct: 58  KAVVRNVEQTEINKLSKITLCIASQNWERLRFLLEKAVELGVDELIIYKTKRSKLYIDKE 117

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           +++R     AA+Q      P +     + FL    +    +V             K+   
Sbjct: 118 EKIRLIIRDAAKQSVRYLFPELRIFRDMSFL--QNESMKTVVLH-----QSGRAAKIDDF 170

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
               ++ I++GPEG + SEE   L  +   T L+LG +ILR +TAA+ A  L   + G
Sbjct: 171 K--GSLRIVVGPEGDFESEEINQLSQVG--TFLNLGKKILRFETAAILAAGLSSFLNG 224


>gi|147845297|emb|CAN83371.1| hypothetical protein VITISV_034944 [Vitis vinifera]
          Length = 259

 Score =  151 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 21/217 (9%)

Query: 44  ILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSP-------------- 88
           + LFNGK G     I+ + ++ + F      +    QS   ++F+               
Sbjct: 40  VELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFDFAITCLQLLLLG 99

Query: 89  -IKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFI 146
            +K  R D++++K  E+G  ++ P++T  + + +   +DR++   ++AA+QC  L    +
Sbjct: 100 TLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTL 159

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
            PPTT++ LL     +   + A     +      L +        ++IGPEG +  +E  
Sbjct: 160 NPPTTIDSLLPIVTQSKLSLVA--VAEATPVFSVLTSSRRESTGLMIIGPEGDFTEKELN 217

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            +      T + LGP  LR +TA +A +A +  +  D
Sbjct: 218 MMREAG-ATAVGLGPHRLRVETATIALLATLM-LWSD 252


>gi|184200945|ref|YP_001855152.1| hypothetical protein KRH_12990 [Kocuria rhizophila DC2201]
 gi|183581175|dbj|BAG29646.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 253

 Score =  151 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 12/217 (5%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQT 77
               + +G +  +   V R++ G+ + L +G+        +   +  +   V+  +R   
Sbjct: 19  GGTLEVTGPEARHAVTVRRLRAGEPLDLVDGRGTRAGCMFTAGERDRMTVAVDSVTREPV 78

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131
               +  + +  K +R    ++ + E+G+  +       +      +     M +     
Sbjct: 79  TAPSLTLVQALAKGDRDLQAVESATELGVDRVVAWQAERSIVRLRAERAAKTMAKWEATL 138

Query: 132 ISAAEQCDILTLPFIYP---PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            SAA+Q      P + P      L  L++       +V   E+  +  S     A     
Sbjct: 139 ASAAKQSRRAHWPELAPWVDTAGLAELVRAEPETLWLVLH-ESVATPWSTAHAAAWRDRE 197

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +A+++GPEGG    E   L       P+ LG  ++R
Sbjct: 198 RIAVVVGPEGGISDGELAALQGAG-ARPVRLGTTVMR 233


>gi|282861815|ref|ZP_06270879.1| protein of unknown function DUF558 [Streptomyces sp. ACTE]
 gi|282563631|gb|EFB69169.1| protein of unknown function DUF558 [Streptomyces sp. ACTE]
          Length = 247

 Score =  151 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 9/223 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69
           FV   L    +    G +  +   V R+  G+ ++L +G+       +       R  V 
Sbjct: 6   FVVEHLADGPEFVLEGPEGRHAVSVKRLNPGEEVVLTDGRGRWAEGVVRAAEGKDRLVVG 65

Query: 70  -EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHY 122
                        +  + +  K +R +  ++   E G+ AI P                 
Sbjct: 66  LTAVREEPVPAPRITVVQALPKGDRGEVAVETMTETGVDAIVPWQASRCITQWKGDRGLK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           ++ + RT    A +Q   +    +    T + +              E     ++     
Sbjct: 126 SLAKWRTTAREAGKQSRRVRFCEVSEAMTTKQVAALLAGADFAGVLHEDRDVPSAALATA 185

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +    ++ +++GPEGG   +E           P  LGP +LR
Sbjct: 186 ELPVRGSIVLVVGPEGGVSPQELAVFAEAG-APPYRLGPSVLR 227


>gi|302551336|ref|ZP_07303678.1| RNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302468954|gb|EFL32047.1| RNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 246

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKI--SYVGKSIRFKVEYQSRSQ 76
             +    G +  +   V R++ G++++L +G        +  +     +  +++  +   
Sbjct: 16  GGRYVLDGPEGRHAVSVKRLRPGEDVVLTDGAGRWADCVVLDTEGKDRLIVQLDSVTEEP 75

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTY 130
            ++  V  + +  K +R +  ++   E+G+  I P                  + + R  
Sbjct: 76  PEEPRVTVVQALPKGDRGELAVETMTEVGVDTIVPWAAARCITQWKGDRGLKALGKWRAT 135

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
              A +Q   +  P +    T + +              E+     +  +L +      +
Sbjct: 136 AREAGKQSRRVRFPEVAEAATTKQVAALLAGADFAAVLHESGDEPLATAELPSSGE---I 192

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
            +++GPEGG   EE           P  LG  +L
Sbjct: 193 VLVVGPEGGVAPEELALFEGAG-AKPYRLGRSVL 225


>gi|302534340|ref|ZP_07286682.1| involving differentiation [Streptomyces sp. C]
 gi|302443235|gb|EFL15051.1| involving differentiation [Streptomyces sp. C]
          Length = 289

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 10/223 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69
           FV   +    +    G +  +   V R+  G++++L +G+       +       R  V 
Sbjct: 47  FVVEEVPAGPEFVLDGPEGRHAVSVKRLGPGEDVVLTDGRGRWAEGVVKAAEGKDRLVVM 106

Query: 70  --EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
             E           +  + +  K +R +  ++   E G+ AI P                
Sbjct: 107 DLESVLEEPEPDVRITVVQALPKGDRGEVAVETMTETGVDAIVPWQASRCITQWRGDRGA 166

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            ++ + R+    + +Q   +  P +    + + +          V   E   + +     
Sbjct: 167 KSLSKWRSTARESGKQSRRVRFPEVAGVMSTKQVAALLAQADLAVVLHEDRDTPSEALAT 226

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
             +    +V +++GPEGG   EE           P  LG  +L
Sbjct: 227 APLPEKGSVVLVVGPEGGVSPEELAVFAEAG-ARPYRLGRSVL 268


>gi|225351945|ref|ZP_03742968.1| hypothetical protein BIFPSEUDO_03550 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157192|gb|EEG70531.1| hypothetical protein BIFPSEUDO_03550 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 265

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K+GD + L +GK     + +    + I  +V    +
Sbjct: 21  ELNAGWKLTLPQSVRRHAIQAMRLKDGDELQLSDGKGLRIHAVLRDAQQGIA-EVSSFGK 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131
                + +  I +  KT   +  I  + ++G+  + P     +  +      D+  R   
Sbjct: 80  EPQPTTKLALIQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDKKWRQVL 139

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGSENSLEKLHAIAH 186
            +A EQ      P +    T + L+      C      IV   +   + + LE+  A+  
Sbjct: 140 DAATEQSRRSWTPELGECVTSKQLIAICKRACVHGDMVIVLHQDATKTWSQLEEAIAVLS 199

Query: 187 IP--------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                      V +++GPEGG    E E+  +      + LG  ILR+ TA   A++L+ 
Sbjct: 200 DKCLQDGRQRTVYVVVGPEGGISDAEIESFTNAGAEACV-LGSNILRASTAGPVALSLLA 258

Query: 239 AICGDW 244
              G +
Sbjct: 259 RALGRF 264


>gi|224282929|ref|ZP_03646251.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium bifidum NCIMB
           41171]
 gi|310287372|ref|YP_003938630.1| RNA methyltransferase [Bifidobacterium bifidum S17]
 gi|313140088|ref|ZP_07802281.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|309251308|gb|ADO53056.1| putative RNA methyltransferase [Bifidobacterium bifidum S17]
 gi|313132598|gb|EFR50215.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 265

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L              +    +R+ EGD + L +G+     + +    ++    VE   R 
Sbjct: 22  LNAGWTITLPASVKRHALGAMRLAEGDGLSLTDGRGLCVKTTLVDA-QAGLVSVERVGRQ 80

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYTI 132
               + +  I +  KT   +  I  + ++G+  + P     +  +      DR  R    
Sbjct: 81  PQPVTRLVLIQALAKTGHDEAAIDMATQIGVDEVIPWQANRSIAKWKAGRTDRKWRQVLD 140

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGSENSLE-------- 179
           +A EQ   +  P +    + + ++          +  IV   +   S +S+E        
Sbjct: 141 AATEQSRRVWSPELAQCVSSKQVVAICRRACVHGDLVIVLHQDATMSWSSVEDEVSRLAD 200

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +  A     ++ +++GPEGG   +E          + + LG  ILR+ TA   A++L+  
Sbjct: 201 RCLADGRPRSINVVVGPEGGISEQEVSDFVGAGAQSVV-LGSNILRASTAGPVALSLLSR 259

Query: 240 ICGDW 244
             G +
Sbjct: 260 ALGRF 264


>gi|195941291|ref|ZP_03086673.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a]
          Length = 243

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS 64
           +K++ +D                YH+L +V R+K+GD + +   KD E  + +I  +G +
Sbjct: 1   MKQIVLDENCLAGNFIIIKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGSN 59

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +      
Sbjct: 60  FIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKIDI 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
            N    + R       A +Q     +P I       +L  ++      V       S   
Sbjct: 120 NNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGII 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A  
Sbjct: 176 LSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAYF 234

Query: 238 QAICGDW 244
           +A+  D+
Sbjct: 235 KALLEDY 241


>gi|255327128|ref|ZP_05368203.1| ribosomal RNA small subunit methyltransferase E [Rothia
           mucilaginosa ATCC 25296]
 gi|255295746|gb|EET75088.1| ribosomal RNA small subunit methyltransferase E [Rothia
           mucilaginosa ATCC 25296]
          Length = 259

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 23/256 (8%)

Query: 10  LFVDFP----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            ++       L         G +  +   V R++ G+ I L +G     L  ++ +    
Sbjct: 6   FYISTEEYDALTPGATCALGGSEGKHAL-VKRLELGERIDLGDGTGRRALGTVASINADG 64

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              +  + R +     +  + +  K  R    I+ + E+G+  + P     +      + 
Sbjct: 65  VSVLVQELREERSVPSIYLVQALAKDGRDLLAIETATELGVYGVLPWSADRSIVRWKGER 124

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH---------NCQIVFADE 170
                 + +    +AA+Q     +P +Y   +   L++  +              +  ++
Sbjct: 125 ASKAHTKWQNTVTAAAKQSRRALIPEVYDLYSTADLVELIEEVAGEVSEQSAAVFILHEQ 184

Query: 171 TCGSENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                ++L +  + A      + +L+GPEGG    E +          L LG  +LRS T
Sbjct: 185 ATERLSALARKLVEAENLPEEIYLLVGPEGGISDREVQLFTDAGAQLAL-LGDEVLRSST 243

Query: 229 AAVAAMALVQAICGDW 244
           A  AAM  +  + G W
Sbjct: 244 AGSAAMCTLNVVLGRW 259


>gi|213965759|ref|ZP_03393951.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           amycolatum SK46]
 gi|213951518|gb|EEB62908.1| ribosomal RNA small subunit methyltransferase E [Corynebacterium
           amycolatum SK46]
          Length = 259

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKV 69
           F + P   +   +  G +  +++ V R+K G  ILL NG D    +++ +V  + +  +V
Sbjct: 10  FTELP-RPEEIIRILGSEAKHIS-VRRLKAGTEILLANGADKVVRAQLMHVDSREVHVRV 67

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY--TQNTHY 122
                    +  V  + +  K++R +  +    E G+  I P      + R+  T     
Sbjct: 68  IAAEERPRPRPHVTVVQALPKSDRAELAVDLMTEAGVDEIIPWAAVNCVARWQGTAKVTK 127

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSLE 179
              + ++    AA+Q     +P +        +E L++       +        +   ++
Sbjct: 128 ARAKWQSAAREAAKQARRAWIPPVADLHSSADIEQLIRETTSAGGVAAVLHEEETAPFVK 187

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                A+   V  ++GPEGG    E E   +    + + LGP +LRS
Sbjct: 188 LAAQAANADKVLFIVGPEGGVSPGELEAFRAAGASSVV-LGPTVLRS 233


>gi|289705009|ref|ZP_06501422.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58]
 gi|289558268|gb|EFD51546.1| RNA methyltransferase, RsmE family [Micrococcus luteus SK58]
          Length = 253

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 95/238 (39%), Gaps = 11/238 (4%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRS 75
               +    G +  + A  +R+  G+ ++L +G        +       +  +++  +  
Sbjct: 17  SAGVEVVFGGPEARHAAAAMRLAPGEAVILADGSGTLGHGTVLAAAPDGVSVRLDAVAEE 76

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
                 +  + +  K +R    +Q +VE+G+ A+ P     +              +   
Sbjct: 77  PAPTPALVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWAD 136

Query: 130 YTISAAEQCDILTLPFIYPPTT---LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
              +AA+Q     +P +    +   +  L+++ D    ++   E      S      ++ 
Sbjct: 137 TARAAAKQARRARVPAVRDHVSGTAVAGLVRDDDGGRLVLVLHEDAERGVSSVPTERLSA 196

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              +A+++GPEGG    E E   +   V P+ LGP +LR+ TA  AA+A++Q   G W
Sbjct: 197 AAEIAVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253


>gi|28493248|ref|NP_787409.1| 16S ribosomal RNA methyltransferase RsmE [Tropheryma whipplei str.
           Twist]
 gi|28572640|ref|NP_789420.1| hypothetical protein TW491 [Tropheryma whipplei TW08/27]
 gi|28410772|emb|CAD67158.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476289|gb|AAO44378.1| unknown [Tropheryma whipplei str. Twist]
          Length = 235

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 7   LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +   F+      L        S  +  +     R++ G+ I L +       ++++   +
Sbjct: 1   MSGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQ 60

Query: 64  --SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
             +I  ++   +  +  +  V  + +  +    +  ++ +VE+G+  I P  +  + N+ 
Sbjct: 61  PGTITARIMNLTLHKPNRVTVSLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSS 120

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
               R  +    AA+Q      P +      E L++    +  I+    +    +SL  L
Sbjct: 121 SR--RWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSLAIILDPGSNTRLSSLGNL 178

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                  +V +LIGPEGG   EE  T+   P +   SLG   L+S TA+VAA++LV    
Sbjct: 179 --FLQRKSVFLLIGPEGGITREEISTI---PGIC-CSLGIETLKSSTASVAALSLVNFFL 232

Query: 242 GDW 244
           G W
Sbjct: 233 GRW 235


>gi|283458058|ref|YP_003362669.1| hypothetical protein RMDY18_10170 [Rothia mucilaginosa DY-18]
 gi|283134084|dbj|BAI64849.1| uncharacterized protein conserved in archaea [Rothia mucilaginosa
           DY-18]
          Length = 304

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 10  LFVDFP----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
            ++       L         G +  +   V R++ G+ I L +G     L  ++ +    
Sbjct: 53  FYISTEEYDALTPGATCVLGGSEGKHAL-VKRLELGERIDLGDGTGRRALGTVASINVDG 111

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
                 + R +     +  + +  K  R    I+ + E+G+  + P     +      + 
Sbjct: 112 VSVQVQELREERSVPSIYLVQALAKDGRDLLAIETATELGVYGVLPWSADRSIVRWKGER 171

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH-------NCQIVFADETC 172
                 + +    +AA+Q     +P +Y       L++  +            +  ++  
Sbjct: 172 ASKAHTKWQNTVTAAAKQSRRALIPEVYDLYNTADLVELIEEVAGSEQSAAVFILHEQAT 231

Query: 173 GSENSLEK--LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
              ++L +  + A      + +L+GPEGG    E +          L LG  +LRS TA 
Sbjct: 232 ERLSALARTLVEAENLPEEIYLLVGPEGGISDREVQLFTDAGAQLAL-LGDEVLRSSTAG 290

Query: 231 VAAMALVQAICGDW 244
            AAM  +  + G W
Sbjct: 291 SAAMCTLNVVLGRW 304


>gi|116074941|ref|ZP_01472202.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916]
 gi|116068163|gb|EAU73916.1| hypothetical protein RS9916_30444 [Synechococcus sp. RS9916]
          Length = 261

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 13/234 (5%)

Query: 4   HSHLKRLFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
            + L+RL +         +     GD+ HYL  VLR++ GD++ + +G+   W +++   
Sbjct: 1   MAELRRLLIAPTRLPTSGSVLVLEGDERHYLRRVLRLRPGDHLAVVDGQGHSWSAQLMEG 60

Query: 62  GKSIRF-KVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVIT-RYTQ 118
           G+ +   +   Q          +   + +   R +D +++ + E+G+  I+P+ +   T 
Sbjct: 61  GEQLDLHQPLDQPLETASAPRPRLGLAVVGVRRGMDDVMRMACELGIDCIQPLSSQWRTP 120

Query: 119 NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----DETCGS 174
                 DR  T    A EQC+ L +P +      +              A     ++   
Sbjct: 121 QAEDRPDRWHTILKEAVEQCERLWMPELLSTVEAKDWWSMPAEGSLKALATTRQPDSVRF 180

Query: 175 ENSL---EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           ++ L   +      +IP + I IGPE G+ + E++      + TPL +G  ILR
Sbjct: 181 DDWLACEQAALDHGNIPELWIAIGPEAGWTATEQDDAQRNGW-TPLEMGRTILR 233


>gi|15594703|ref|NP_212492.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31]
 gi|8928457|sp|O51333|RSME2_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 2;
           AltName: Full=16S rRNA m3U1498 methyltransferase 2
 gi|2688252|gb|AAC66730.1| conserved hypothetical protein [Borrelia burgdorferi B31]
          Length = 243

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDEN-CLAGNFIIVKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----- 117
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118

Query: 118 -QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 INNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A 
Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAY 233

Query: 237 VQAICGDW 244
            +A+  D+
Sbjct: 234 FKALLEDY 241


>gi|296130048|ref|YP_003637298.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM
           20109]
 gi|296021863|gb|ADG75099.1| protein of unknown function DUF558 [Cellulomonas flavigena DSM
           20109]
          Length = 252

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 11/240 (4%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQ 72
             +    +    G +  +   V R   G+ + + +G     ++++  VG + +R  V+  
Sbjct: 14  ADVRAGGEYLLDGSEGRHAGVVQRRGPGERVDVVDGAGVRLVARVRAVGPEGVRLDVDEV 73

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDR 126
                 +  +  + +  K +R +  I+ + E+G+  + P     +      +    +  R
Sbjct: 74  VVEPAPEPRLVLVQALAKGDRDEMAIEAATEVGVDVVVPWQAERSIVVWRGERAQKSRAR 133

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH--AI 184
                 +A +Q     +P +         L                  E +   L   A+
Sbjct: 134 WIGTVRTATKQARRARMPQVEHALD-HAALVARVGAVVAAGGVAVVLHETAATPLRDIAL 192

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                V +++GPEGG    E     +        LGP +LR+ TA   A+A++    G W
Sbjct: 193 PAGGEVLVVVGPEGGISDREVAA-LTAAGAAVARLGPHVLRTSTAGPVALAVLADRLGRW 251


>gi|167837895|ref|ZP_02464778.1| hypothetical protein Bpse38_15507 [Burkholderia thailandensis
           MSMB43]
          Length = 156

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + A VLR++ GD + LF+G  G++ ++I  + + 
Sbjct: 8   AAVPRFFVDAALQADATLPLPVDVARH-AQVLRLQPGDLLALFDGTGGQYRARIVEIDRR 66

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 67  GALARIDAFEPVEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVKLS 126

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFI 146
            +     +   R    ++ EQC    +P +
Sbjct: 127 GERADKRVSHWRGVVRASCEQCGRNRVPDV 156


>gi|148239823|ref|YP_001225210.1| hypothetical protein SynWH7803_1487 [Synechococcus sp. WH 7803]
 gi|147848362|emb|CAK23913.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
          Length = 251

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 8   KRLFVDFPLCIKTQGK----ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +RL ++       Q       +  +  YL  VLR++ G  + + +G    + ++++  G 
Sbjct: 5   RRLLIEPARLRDAQALGRLGLTAAEARYLKRVLRLRPGAEVHVVDGCGQLFGTRLTPEG- 63

Query: 64  SIRFKVEYQSRSQT---KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-N 119
            +       +R QT    Q  +    + ++   +D +++ + E+G+  ++P+  + +   
Sbjct: 64  ELSLDRGADARLQTLAAPQPRLGLAVALMRRG-MDEVMRMACELGVDHLQPLQAQRSVPQ 122

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSL 178
                DR       A EQC+ L  P + P  + +         + +++       S +  
Sbjct: 123 AECRPDRWGVILREAVEQCERLWAPELLPVLSSDDWWNGPSGQSLRLIAVTRDQASTDLS 182

Query: 179 EKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             L A         I IGPEGG+ S+E  +     +   + LG  ILRS
Sbjct: 183 TLLAAHGAGAGCCWIAIGPEGGWTSDELRSAAEAGWC-GVGLGDTILRS 230


>gi|311741359|ref|ZP_07715183.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303529|gb|EFQ79608.1| RsmE family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 252

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 27/236 (11%)

Query: 11  FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65
           F+   L           SG +  +   V RM EG+ + L +G        I+      S+
Sbjct: 6   FIHPDLSAARTGEAFSFSGPEARHAVTVKRMGEGERLELIDGTGTRLTLTITATSGKDSL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              V+    +      V  + +  K+ R +  +  + + G   I              + 
Sbjct: 66  EGTVDSIDTAPVPTPRVSVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---------QIVFADE 170
               + + +    SAA+Q     +P +  P T   L++                +V  +E
Sbjct: 126 APKAVAKWQAAADSAAKQSRRARIPQVRGPLTTPQLVQELTGGRDGASSNAPTVLVLHEE 185

Query: 171 TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
              S      +  +    +V +L+GPEGG    E + L      TP+ LGP +LR+
Sbjct: 186 ATVS------IKDVPLADDVVLLVGPEGGIGDAELDRLKEAG-ATPIKLGPEVLRT 234


>gi|261414965|ref|YP_003248648.1| protein of unknown function DUF558 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371421|gb|ACX74166.1| protein of unknown function DUF558 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326218|gb|ADL25419.1| conserved hypothetical protein TIGR00046 [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 241

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 17/237 (7%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRF 67
           R +   PL          ++  +   V R   G+ + L +G      + I+    K+   
Sbjct: 7   RFYC--PLISVGTIILDENESSHAVRVCRAVNGEILQLCDGLGHYADATITKADAKACEV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122
           +V+    +  K+  +    + +K + L+ ++  + +    +I  + T Y+Q     +   
Sbjct: 65  RVDTVEDAPLKRPRLNLGIACLKDDALEEVVFHAAQTETDSIIFLRTDYSQEPKNSDLKK 124

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R    ++ + +Q     +  I  P   +  LK++  +  ++  D     E  L+   
Sbjct: 125 TVRRAELKSLVSLKQSKKPWMTRIEGPIEFDKWLKDYQGD--LILCD--IDGERKLDINE 180

Query: 183 AIAHIPN---VAILIGPEGGYHSEEKETLH--SLPFVTPLSLGPRILRSDTAAVAAM 234
             A   N   V +L+GPEGG+   E E +       V  L+LG   LR+ TAA+ A+
Sbjct: 181 GAAENSNATPVTLLVGPEGGFSPREIEAIKTFKNGKVHLLNLGNTRLRARTAAIIAL 237


>gi|193216716|ref|YP_001999958.1| 16S ribosomal RNA methyltransferase RsmE [Mycoplasma arthritidis
           158L3-1]
 gi|193002039|gb|ACF07254.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1]
          Length = 220

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 20/233 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + + F               +   +   V R+K  D   L N ++  +    S+ G ++ 
Sbjct: 1   MYKFFCYHK--AGDAFILDDETCQHFRAV-RIK--DEHFLINFENEFYEC--SFKGPNLA 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---- 122
             ++  + +      +      IK    +  +QKSVE+G   I P  + Y    +     
Sbjct: 54  IIIKKLTINNELPFKLIVAIPLIKQANFEMALQKSVELGASEIIPFYSDYCDVANKNITN 113

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            + R       AA+Q     +P ++   +   +L     N  + + +E            
Sbjct: 114 KISRYLKIIKQAAQQSFRNIIPKLHTVHSFSEILTFECKNKYLAYENEKSSPFKP----- 168

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                    +++GPEGG++  E         V  +SL   ILR++TA +  ++
Sbjct: 169 ---DFAEAMLIVGPEGGFNFNEIAQAKQKN-VKIVSLTKSILRTETAIIYMLS 217


>gi|224533193|ref|ZP_03673793.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|224511920|gb|EEF82321.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
          Length = 243

 Score =  148 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDQN-CLAGNFIIVKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A 
Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAY 233

Query: 237 VQAICGDW 244
            +A+  D+
Sbjct: 234 FKALLEDY 241


>gi|66811880|ref|XP_640119.1| hypothetical protein DDB_G0282549 [Dictyostelium discoideum AX4]
 gi|60468124|gb|EAL66134.1| hypothetical protein DDB_G0282549 [Dictyostelium discoideum AX4]
          Length = 314

 Score =  148 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 102/290 (35%), Gaps = 66/290 (22%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-- 63
           ++R F++  P         SG Q+ +L   LR+K G+ I +F+       + I  +GK  
Sbjct: 1   MRRFFINNIPFVNGGSLLLSGQQHSHLKKSLRLKVGNVIEVFDSNGQNCQATIIDIGKNE 60

Query: 64  -SIRFKVE----------------------------------YQSRSQTKQSDVQYIFSP 88
             I+ +++                                    + +     ++    S 
Sbjct: 61  TKIKLQLDSNKALKKDNKNSIINENSNNNKEDIDEIINMNNNNDNNNIDININIDLATSL 120

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPV-------ITRYTQNTHYNMDRVRTYTISAAEQCDIL 141
            K  R ++MI+K  E+G+  +  +              T   +DR     I +++Q    
Sbjct: 121 PKIQRAEWMIEKLTEIGVKNLFLLESEYSKSSPSSGSLTSNKLDRFERIIIESSKQSKNN 180

Query: 142 TLPFIYPPTTLEFLLKN--------WDHNCQIVFADETCGSENSLE---KLHAIAHIPNV 190
            L  I PP   +  LK+              I   D        +    K +   ++ + 
Sbjct: 181 HLMNIIPPQPYKQFLKDKFNIDTIKQSKYSHIFLFDPNGKPLPLIFNEIKENNNNNVRDT 240

Query: 191 AILIGPEGGYHSEEKETLHS-------LPFVTPLS-LGPRILRSDTAAVA 232
            ILIGPEGG+ + E   L           F   +S LG  ILR +TAA+ 
Sbjct: 241 LILIGPEGGFTNNEINQLQQTIDKRNDSNFY--ISKLGNTILRMETAAIV 288


>gi|289523493|ref|ZP_06440347.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503185|gb|EFD24349.1| putative 16S rRNA methyltransferase RsmE [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 225

 Score =  148 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 15/218 (6%)

Query: 28  QYHYLAHVLRMKEGDNIL-LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
           + H+L HV R + G+    L  G+      +    G+ +  K   +     +   +  + 
Sbjct: 8   ESHHLVHVRRCRIGEEFEGLLEGRKLLLKIEGYEQGR-VIAKETGKLPIYERSRQISLLI 66

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTYTISAAEQCDIL 141
           + +K N  + ++  + E+G+  I P++   +           M+R R     A +   I 
Sbjct: 67  ALVKNNAFEDILNHATELGVAEIIPILAERSVVQLKGQLTKKMERWRRIIAEATKISGIG 126

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IAHIPNVAILIGPEGG 199
             P ++ P  +  L      + +++         +  + L +  I    +V   +GPEG 
Sbjct: 127 NPPLLHTPLKVLDLRDESLPSLRLL-----GALTDDAKPLGSVNIKQQEDVVFAVGPEGD 181

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +   E      L F+ P+SLGP ILR++TAA+A ++ +
Sbjct: 182 WTEGEMAYFARLKFL-PVSLGPNILRANTAAIAGLSYI 218


>gi|126696059|ref|YP_001090945.1| 16S ribosomal RNA methyltransferase RsmE [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543102|gb|ABO17344.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
           marinus str. MIT 9301]
          Length = 257

 Score =  148 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 13/223 (5%)

Query: 27  DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF-KVEYQSRSQTKQSDVQYI 85
           ++ HY+  V+R+K G  I + NG+   W + I      +   +++     Q ++  +  I
Sbjct: 27  EETHYINKVMRIKNGKEIFIANGEGSLWKA-IKIKNDCLEIGQLKKPYLFQEQEIHLLGI 85

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH----YNMDRVRTYTISAAEQCDIL 141
              I  +  + +++   E+G+  I+P+ +    N +      + R  +    A EQ + L
Sbjct: 86  AVVIPKSGFEDILKMCTEIGIDFIQPLFSERQVNKNLNFSRKLLRWNSIINEAVEQSERL 145

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQI---VFADETCGSENSLEKLHAIAHIPNVAIL---IG 195
             P I     +   LK+ D+  ++   +  +ET    N   +           I    IG
Sbjct: 146 WKPSILNGMDIVEWLKSRDNQERVSISITREETLYDLNQWLRKQQEFVNRRGGIFWNVIG 205

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           PEGG+ S+E +  +    +  + L   ILR+ TA++ A +++ 
Sbjct: 206 PEGGWSSKEIDFFNRKN-IAFVKLSDTILRTSTASINASSILN 247


>gi|225549046|ref|ZP_03770021.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|226320424|ref|ZP_03795991.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|225370272|gb|EEG99710.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|226234177|gb|EEH32891.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|312147992|gb|ADQ30651.1| conserved hypothetical protein [Borrelia burgdorferi JD1]
          Length = 243

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A 
Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAY 233

Query: 237 VQAICGDW 244
            +A+  D+
Sbjct: 234 FKALLEDY 241


>gi|216264326|ref|ZP_03436318.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221217796|ref|ZP_03589264.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223888845|ref|ZP_03623436.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224533755|ref|ZP_03674343.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|225550091|ref|ZP_03771051.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|226321674|ref|ZP_03797200.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
 gi|215980799|gb|EEC21606.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221192473|gb|EEE18692.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223885661|gb|EEF56760.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224513048|gb|EEF83411.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|225369203|gb|EEG98656.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|226232863|gb|EEH31616.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
          Length = 243

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKID 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A 
Sbjct: 175 ILSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAY 233

Query: 237 VQAICGDW 244
            +A+  D+
Sbjct: 234 FKALLEDY 241


>gi|326381611|ref|ZP_08203305.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326199858|gb|EGD57038.1| 16S ribosomal RNA methyltransferase RsmE [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 250

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 14/228 (6%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
            +VD           SG +  +   V R+  G++++L +G+      ++  V    R  V
Sbjct: 6   FWVDEVPRAGDTTVLSGPEGRHAVTVTRIASGESVILGDGRGTTAECEVVDVAGKDRLTV 65

Query: 70  EY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
                      +  V  + +  K  R +  +    E G+ AI P  +  +          
Sbjct: 66  RAGRVQFHTRAKPLVTIVQALPKAERSELAVDLMTEAGVDAIVPWQSSRSIARWSGSKAV 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPP---TTLEFLLKNWDHNCQIVFADETCGSENSL 178
             +++ R+   +AA+Q     +P +      T +  L         IV      GS    
Sbjct: 126 KGVEKWRSTAATAAKQARRAWIPEVADLAGTTDVRDLAARVTAGGGIVALLHEDGSVPFR 185

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                 +  P V  +IGPEGG    E   L +L   + + LGP +LR+
Sbjct: 186 SI--DFSDAPEVVFVIGPEGGLADSEIADLTALGGTSVV-LGPEVLRT 230


>gi|218249900|ref|YP_002374877.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
 gi|218165088|gb|ACK75149.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
          Length = 243

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 15/247 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           +K++ +D   C+        D   YH+L +V R+K+GD + +        +S+I  +G +
Sbjct: 1   MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNILLKDKELRVSEIVKIGSN 59

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +      
Sbjct: 60  FIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKIDI 119

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
            N    + R       A +Q     +P I       +L  ++      V       S   
Sbjct: 120 SNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGMI 175

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A  
Sbjct: 176 LSKNESFDNFGKIGIIIGPEGCFSESEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAYF 234

Query: 238 QAICGDW 244
           +A+  D+
Sbjct: 235 KALLEDY 241


>gi|79319632|ref|NP_001031165.1| methyltransferase [Arabidopsis thaliana]
 gi|49660073|gb|AAT68327.1| hypothetical protein At1g50000 [Arabidopsis thaliana]
 gi|332194385|gb|AEE32506.1| ribosomal RNA small subunit methyltransferase E [Arabidopsis
           thaliana]
          Length = 210

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 7   LKRLFVDF-PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R F D  P       +  G ++ ++A VLR+K+ D + LFNGK G     I  + K+ 
Sbjct: 53  LPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTG 112

Query: 66  RFKVEYQSR----SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NT 120
              +  + +     Q  Q  V   F  +K  R D++I+K  E+G  ++ P++T  +   +
Sbjct: 113 VDFIAQEDQKVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIIS 172

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157
              +DR+   + +AA+QC  L    + PP     LL 
Sbjct: 173 ENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGTLLD 209


>gi|239917736|ref|YP_002957294.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC
           2665]
 gi|281413769|ref|ZP_06245511.1| hypothetical protein MlutN2_00947 [Micrococcus luteus NCTC 2665]
 gi|239838943|gb|ACS30740.1| conserved hypothetical protein TIGR00046 [Micrococcus luteus NCTC
           2665]
          Length = 253

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 94/239 (39%), Gaps = 13/239 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRS 75
               +    G +  + A  +R+  G+ ++L +G        +       +  +++  +  
Sbjct: 17  SAGVEVDFGGPEARHAAAAMRLAPGETVILADGSGTLGHGTVLAAAPDGVSVRLDAVAEE 76

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRT 129
                 +  + +  K +R    +Q +VE+G+ A+ P     +              +   
Sbjct: 77  PAPTPALVLVQALAKGDRDLMAVQAAVELGVDAVVPWEAERSIVRWKGPKAAKARQKWAD 136

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIA 185
              +AA+Q     +P +    +   +      +      +V  ++     +S+     ++
Sbjct: 137 TARAAAKQARRARVPAVRDHVSGTAVAGLVRDDGGGRLVLVLHEDVEHGVSSVPA-ERLS 195

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               +A+++GPEGG    E E   +   V P+ LGP +LR+ TA  AA+A++Q   G W
Sbjct: 196 EAAEIAVVVGPEGGIGPAELEACVAAGAV-PVRLGPHVLRASTAGPAALAVLQHRLGRW 253


>gi|88808873|ref|ZP_01124382.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805]
 gi|88786815|gb|EAR17973.1| hypothetical protein WH7805_04256 [Synechococcus sp. WH 7805]
          Length = 251

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 9/227 (3%)

Query: 8   KRLFVDFPLCIKTQ----GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           +RL ++       Q       +  +  YL  VLR++ G  + + +G    + ++++  G 
Sbjct: 5   RRLLIEPARLRSAQALSRIGLTVAEARYLKRVLRLRPGAEVHVVSGCGQLFSTRLTTEGD 64

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYTQ-NTH 121
                                  +     R +D +++ + E+G+  ++P+  +       
Sbjct: 65  LALDSELGALPYTVAAPHPPLGLAVSLMRRGMDEVMRMACELGVDRLQPLQAQRCVPQAE 124

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN-CQIVFADETCGSENSLEK 180
           Y  DR       A EQC+ L  P + P  + +    N      +++         +    
Sbjct: 125 YRPDRWGVILREAVEQCERLWAPELLPVLSTDDWWGNPSAEHLRLIAVTRDQACSDLSTL 184

Query: 181 LHAIAHIPNVAIL-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           L     +P+   + IGPEGG+ S E  +     +   + LG  ILRS
Sbjct: 185 LAVTKSLPDGCWITIGPEGGWTSAELRSAAEAGWC-GVGLGDTILRS 230


>gi|332670855|ref|YP_004453863.1| hypothetical protein Celf_2349 [Cellulomonas fimi ATCC 484]
 gi|332339893|gb|AEE46476.1| protein of unknown function DUF558 [Cellulomonas fimi ATCC 484]
          Length = 256

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 13/240 (5%)

Query: 17  CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRS 75
                    G +  +   V R   G+ + + +G     +  + +VG + +  +V+     
Sbjct: 17  VPGGTYLLDGTEGRHAGVVQRRGPGERVDVVDGAGVRLVGVVEHVGAEGVHLRVDDVVVE 76

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYNMDRVRT 129
                 +  + +  K +R +  I+ + E+G  A+ P      ++    +    +  R   
Sbjct: 77  PAPDVALVLVQALAKGDRDELAIEAATEVGADAVLPWQADRSIVVWRGERAAKSRARWLG 136

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEKLHAI 184
              +AA+Q     +P +        L +            +V  +E       ++   A 
Sbjct: 137 TVRAAAKQARRARVPEVGTAVDSRALAQRVRDAVAAGGGALVLHEEATVPVADVDLPAAG 196

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                  +++GPEGG   +E   L     V  + LGP +LR+ TA   A+A++    G W
Sbjct: 197 GPGRECLVVVGPEGGIGEDELARLVDAGAV-AVRLGPHVLRTSTAGPVALAILAQRLGRW 255


>gi|212716041|ref|ZP_03324169.1| hypothetical protein BIFCAT_00953 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661408|gb|EEB21983.1| hypothetical protein BIFCAT_00953 [Bifidobacterium catenulatum DSM
           16992]
          Length = 265

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 20/247 (8%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K+GD + L +G+     + +    + I  +V   S+
Sbjct: 21  ELNAGWKLTLPQSVRRHAIQAMRLKDGDELQLSDGRGLRIHAVLCDAQQGI-AQVSSFSK 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130
            Q   + +  + +  KT   +  I  + ++G+  + P     +    + + R     R  
Sbjct: 80  EQQPVTKLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSI-AKWKVGRTDKKWRQV 138

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHAIA 185
             SA EQ      P +      + L+      C      IV   +   + N LE+  A  
Sbjct: 139 LESATEQSRRSWTPELGECVASKQLVAICKRACVRGDMVIVLHQDATKTWNQLEESIAAL 198

Query: 186 HIP--------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                       V +++GPEGG    E E+         + LG  ILR+ TA   A++L+
Sbjct: 199 SDKCLQDGRQRTVYVVVGPEGGIGDAEIESFTDAGAEVCV-LGSNILRASTAGPVALSLL 257

Query: 238 QAICGDW 244
               G +
Sbjct: 258 ARALGRF 264


>gi|309799316|ref|ZP_07693562.1| YqeU [Streptococcus infantis SK1302]
 gi|308117056|gb|EFO54486.1| YqeU [Streptococcus infantis SK1302]
          Length = 191

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 70/190 (36%), Gaps = 8/190 (4%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +++ FV          +   +   ++  V+R+KE D + L      + L+++  V +   
Sbjct: 1   MQQYFVKGSAVSPVTIE-DKETSKHMFQVMRLKEDDEVTLVFDDGIKRLARVVNVEERQF 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNT 120
             VE  + +      V       K ++L+++ QK  E+G   I        V     +  
Sbjct: 60  ELVEELTDNVELPVQVTIASGFPKGDKLEFITQKVTELGASQIWAFPADWSVAKWDGKKL 119

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE-NSLE 179
              ++++    + AAEQ     +P I         L       +IV A E    E  S  
Sbjct: 120 GKKVEKLEKIALGAAEQSKRNFVPSITLFEKKADFLAQLSQFDRIVVAYEESAKEGESAA 179

Query: 180 KLHAIAHIPN 189
            + A+A +  
Sbjct: 180 LIQAVAGLEK 189


>gi|312149696|gb|ADQ29767.1| conserved hypothetical protein [Borrelia burgdorferi N40]
          Length = 243

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKID 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A 
Sbjct: 175 ILSKNESFDNFAKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSLAY 233

Query: 237 VQAICGDW 244
            +A+  D+
Sbjct: 234 FKALLEDY 241


>gi|183601562|ref|ZP_02962932.1| hypothetical protein BIFLAC_02882 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683903|ref|YP_002470286.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241190939|ref|YP_002968333.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196345|ref|YP_002969900.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219168|gb|EDT89809.1| hypothetical protein BIFLAC_02882 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219621553|gb|ACL29710.1| conserved hypothetical protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249331|gb|ACS46271.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250899|gb|ACS47838.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178681|gb|ADC85927.1| surface protein [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793928|gb|ADG33463.1| 16S rRNA m3U1498 methyltransferase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 265

 Score =  146 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 23/253 (9%)

Query: 13  DFPLCIKT-----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           D PL           +   +   +    +R+KEGD + L +G      + +    KS   
Sbjct: 14  DAPLSSDELQTGWTLRLPEEVRRHAIGSMRLKEGDELQLSDGTGLRIQAVVDD-PKSGIV 72

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NMD 125
           +V   ++ +     +  I +  K    +  I  + ++G+  + P     +         D
Sbjct: 73  RVLGFTKEERPVVRLGLIQALAKNGHDEQAIDMATQIGVDEVTPWQADRSIARFKAGRTD 132

Query: 126 R-VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADETCGS----- 174
           R       +A EQ     +P ++   T + +L          N  IV   +   +     
Sbjct: 133 RKWMQTLRAATEQSRRAFIPELHGMATSKQVLAMIRRDMVHGNLVIVLHQDANATWSDVE 192

Query: 175 ---ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              E    K         V++++GPEGG   +E E       +  + LG  ILR+  A  
Sbjct: 193 RQVEELAAKCLDDGKERTVSVVVGPEGGISDQEVEVFAEAGALVCV-LGRNILRASAAGP 251

Query: 232 AAMALVQAICGDW 244
            A+ L+    G +
Sbjct: 252 VALGLLSRAIGRY 264


>gi|288916974|ref|ZP_06411346.1| protein of unknown function DUF558 [Frankia sp. EUN1f]
 gi|288351683|gb|EFC85888.1| protein of unknown function DUF558 [Frankia sp. EUN1f]
          Length = 257

 Score =  146 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 35/239 (14%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDV 82
            SG +  + A V R++ G+ + + +G       ++  VG+  +   V  +         +
Sbjct: 2   LSGAEGRHAATVRRLRSGERLDVTDGAGTALECEVGSVGRDELECVVLRRREVPAPVPRL 61

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               +  K +R +  ++   E G+  I P            +    +  R       AA+
Sbjct: 62  VVAQALAKGDRGELAVEMMTEAGVDEIVPWAASRCVVRWEGERGERSRARWDRTAREAAK 121

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-----CGSENSLE------------ 179
           Q   L  P +    T   L +        V   ET      G    L+            
Sbjct: 122 QSRRLVWPEVGGLVTTAALARRARQAALAVVLHETASTPVAGLARGLQVPRAVPAPAPPP 181

Query: 180 ----------KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                            +P V +++GPEGG   EE   L +   V    LGP +LR+ T
Sbjct: 182 GIPGTPGMSGAAPGAPAVPEVLLVVGPEGGVSEEELGALTAAGAVAG-RLGPTVLRTST 239


>gi|225552469|ref|ZP_03773409.1| conserved hypothetical protein [Borrelia sp. SV1]
 gi|225371467|gb|EEH00897.1| conserved hypothetical protein [Borrelia sp. SV1]
          Length = 243

 Score =  146 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 17/248 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDEN-CLAGDFIIVKDAKIYHHLVNVRRIKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSVSKID 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIIPKINFYNNFFYLPYSFCTTKYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++A 
Sbjct: 175 LLSKNESFGNFGKIGIIIGPEGCFSEPEIVFFKEKGF-NFVRFNTPILRADTAIIYSLAY 233

Query: 237 VQAICGDW 244
            +A+  D+
Sbjct: 234 FKALLEDY 241


>gi|329934636|ref|ZP_08284677.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces
           griseoaurantiacus M045]
 gi|329305458|gb|EGG49314.1| Ribosomal RNA small subunit methyltransferase E [Streptomyces
           griseoaurantiacus M045]
          Length = 249

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 10/226 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
             V+            G +  +   V R++ G++++L +G+       ++      R  V
Sbjct: 6   FLVEELRGAGPDFVLDGPEGRHAVSVKRLRPGEDVVLTDGRGRWAEGVVTAAEGKDRLLV 65

Query: 70  ---EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNT 120
                      +Q  +  + +  K +R +  ++   E+G+  I P            +  
Sbjct: 66  GGLARVREEPPEQPRITVVQALPKGDRGELAVETMTEVGVDTIVPWQAARCITQWKGERG 125

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              + + R+    A +Q   +  P +    T + +                    ++   
Sbjct: 126 QKALAKWRSTAREAGKQSRRVRFPEVADAATSKQVAALLAKADLAAVLHSDFEYGSTPLA 185

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
              +     + +++GPEGG  + E            + LG  +LR+
Sbjct: 186 TAELPAEGEIVLVVGPEGGVAAYELALFREAGAKAYV-LGRSVLRT 230


>gi|23335010|ref|ZP_00120248.1| COG1385: Uncharacterized protein conserved in bacteria
           [Bifidobacterium longum DJO10A]
 gi|23465438|ref|NP_696041.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium longum
           NCC2705]
 gi|189439461|ref|YP_001954542.1| 16S ribosomal RNA methyltransferase RsmE [Bifidobacterium longum
           DJO10A]
 gi|227545914|ref|ZP_03975963.1| protein of hypothetical function DUF558 [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239622038|ref|ZP_04665069.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132869|ref|YP_004000208.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482197|ref|ZP_07941219.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688978|ref|YP_004208712.1| hypothetical protein BLIF_0791 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690947|ref|YP_004220517.1| hypothetical protein BLLJ_0757 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326089|gb|AAN24677.1| conserved hypothetical protein with similarity to SdrD of S.
           coelicolor [Bifidobacterium longum NCC2705]
 gi|189427896|gb|ACD98044.1| Hypothetical protein BLD_0598 [Bifidobacterium longum DJO10A]
 gi|227213548|gb|EEI81397.1| protein of hypothetical function DUF558 [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515229|gb|EEQ55096.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516988|emb|CBK70604.1| RNA methyltransferase, RsmE family [Bifidobacterium longum subsp.
           longum F8]
 gi|311773839|gb|ADQ03327.1| Hypothetical protein BBMN68_604 [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916335|gb|EFV37735.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455803|dbj|BAJ66425.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460314|dbj|BAJ70934.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 265

 Score =  145 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K GD++ L +G      + +    ++   +V    R
Sbjct: 21  ELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQA-VMADPEAGLAEVVEVGR 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130
                + +  I +  KT   +  I  + ++G+  + P     +    + + R      + 
Sbjct: 80  EPEPLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSI-AKWKVGRTDKKWNSV 138

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGS--------ENS 177
             +A EQ      P +    + + ++      C      IV   +   +           
Sbjct: 139 LDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQL 198

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +E+         V++++GPEGG   +E         V+ + LG  ILR+ TA   A++L+
Sbjct: 199 VERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCV-LGRNILRAATAGPVALSLL 257

Query: 238 QAICGDW 244
             + G +
Sbjct: 258 SRVLGRY 264


>gi|291456688|ref|ZP_06596078.1| RNA methyltransferase family protein [Bifidobacterium breve DSM
           20213]
 gi|291381965|gb|EFE89483.1| RNA methyltransferase family protein [Bifidobacterium breve DSM
           20213]
          Length = 265

 Score =  145 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 88/246 (35%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K GD++ L +G+     + +    ++   +V    R
Sbjct: 21  ELHTGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGRGLRIHA-VMADPEAGLAEVVTVGR 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131
                + +  I +  KT   +  +  + ++G+  + P     +  +      D+      
Sbjct: 80  EPEPLTRLALIQALAKTGHDEQAVDMATQIGVDQVVPWQADRSIAKWKAGRTDKKWNAVL 139

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWD-----HNCQIVFADET--------CGSENSL 178
            +A EQ      P +      + ++          +  IV   +               +
Sbjct: 140 DAATEQARRAYKPQLEACANSKEVVAICRRACVHGDLVIVLHQDATDTWTGVEAKVAQLV 199

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           E+  +      V++++GPEGG   +E         V+ + LG  ILR+ TA   A++L+ 
Sbjct: 200 ERTLSDGKPRTVSVVVGPEGGISEQEVADFTKAGAVSCV-LGSNILRAATAGPVALSLLS 258

Query: 239 AICGDW 244
              G +
Sbjct: 259 RALGRY 264


>gi|296454039|ref|YP_003661182.1| hypothetical protein BLJ_0887 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183470|gb|ADH00352.1| protein of unknown function DUF558 [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 265

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K GD++ L +G      + +    ++   +V    R
Sbjct: 21  ELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQA-VMADPEAGLAEVVEVGR 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130
                + +  I +  KT   +  I  + ++G+  + P     +    + + R      + 
Sbjct: 80  EPEPLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSI-AKWKVGRTDKKWNSV 138

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGS--------ENS 177
             +A EQ      P +    + + ++      C      IV   +   +           
Sbjct: 139 LDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVTQL 198

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +E+         V++++GPEGG   +E         V+ + LG  ILR+ TA   A++L+
Sbjct: 199 VERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCV-LGHNILRAATAGPVALSLL 257

Query: 238 QAICGDW 244
             + G +
Sbjct: 258 SRVLGRY 264


>gi|158313945|ref|YP_001506453.1| 16S ribosomal RNA methyltransferase RsmE [Frankia sp. EAN1pec]
 gi|158109350|gb|ABW11547.1| protein of unknown function DUF558 [Frankia sp. EAN1pec]
          Length = 242

 Score =  145 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 20/224 (8%)

Query: 24  ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ-SDV 82
             G +  + A V R++ G+ + + +G       ++  VG+     V  + RS       +
Sbjct: 2   LGGPEGRHAATVRRLRVGERLDVTDGAGAALECEVRSVGRDELECVVLRRRSPAAAGPRL 61

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAE 136
               +  K +R +  ++   E+G+  I P            +    +  R       AA+
Sbjct: 62  VVAQALAKGDRGELAVEMLTEIGVDEIVPWAASRCVVRWDGERGERSRARWTRTAQEAAK 121

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADET-----CGSENSLEKLHAIAHIP--- 188
           Q      P + P      L +        V   ET      G   +L+   A+  +P   
Sbjct: 122 QSRRHAWPLVGPLAGTAALAERARRAALAVVLHETATTPLAGLARALQPAFAVEPVPAVE 181

Query: 189 ----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                + +++GPEGG    E E L +   V    LGP +LR+ T
Sbjct: 182 PEIGEILLVVGPEGGVADGELEALTAAGAVAG-RLGPTVLRTST 224


>gi|309801175|ref|ZP_07695304.1| RNA methyltransferase [Bifidobacterium dentium JCVIHMP022]
 gi|308222064|gb|EFO78347.1| RNA methyltransferase [Bifidobacterium dentium JCVIHMP022]
          Length = 272

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+++GD + L +GK     + +    + I  +V    R
Sbjct: 28  ELNAGWKLTLPASVRRHAIQAMRLEDGDELQLSDGKGLRIHAVLRDAQQGI-AEVLRFGR 86

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131
                  +  + +  KT   +  I  + ++G+  + P     +  +      DR  R   
Sbjct: 87  ESQPTIRLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDRKWRQVL 146

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP 188
           ++A EQ      P +    T + ++      C    +V       ++  ++   AIA + 
Sbjct: 147 VAATEQSRRSWSPELGECVTSKQVVAICRRACVHGDLVIILHQDATKTWIQIEQAIAGLS 206

Query: 189 N----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +          + +++GPEGG    E  +         + LG  ILR+ TA   A++L+ 
Sbjct: 207 DKCLEDGRRRTIYVVVGPEGGISDAEVASFTEAGAEVCV-LGNNILRASTAGPVALSLLA 265

Query: 239 AICGDW 244
              G +
Sbjct: 266 RALGRF 271


>gi|229817685|ref|ZP_04447967.1| hypothetical protein BIFANG_02956 [Bifidobacterium angulatum DSM
           20098]
 gi|229785474|gb|EEP21588.1| hypothetical protein BIFANG_02956 [Bifidobacterium angulatum DSM
           20098]
          Length = 275

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 18/240 (7%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
           +         +    +R+KEGD   L +G+       +      I  +V    R     +
Sbjct: 37  KLTLPPQVRRHAVQSMRLKEGDEFQLSDGRGLRLTVVLDDADNGI-AEVREFVREAQPVT 95

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYTISAAEQ 137
            +  + +  K+   +  I  + ++G+  + P     +  +  +   DR   +   +A EQ
Sbjct: 96  RLALVQALAKSGHDEQAIDIATQIGVDTVVPWQADRSIAKWKNGRTDRKWLSALQAATEQ 155

Query: 138 CDILTLPFIYPPTTLEFLL-----KNWDHNCQIVFADETCGSENSLEK--------LHAI 184
                 P +    + + ++      N   +  IV   +   +  S+E+            
Sbjct: 156 SRRAFTPQLEDCVSSKQIVSMILRANVHGDLVIVLHQDATDTWESIERHVGHLADECLKD 215

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
                V +++GPEGG    E            + LG  ILR+ TA   A++L+    G +
Sbjct: 216 GKPRTVYVVVGPEGGISEVEVSQFVEAG-AKSVVLGSNILRASTAGPVALSLLSRTLGRY 274


>gi|222100185|ref|YP_002534753.1| hypothetical protein CTN_1211 [Thermotoga neapolitana DSM 4359]
 gi|221572575|gb|ACM23387.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 222

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 20/236 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +  LF   P     +      + H++  V+R+KEG+ +   +G+   +   ++ + KS  
Sbjct: 1   MPHLFYGTP--RNGEIVFDEREAHHM-RVVRLKEGETVETTDGEGFSYTCVLTRLKKSEA 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPI--KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
                +   + ++   +        +  R   +I+K VE+G   I       +Q++  ++
Sbjct: 58  VAKILKIEKKEEEPSEKLKVVVPIGRWERTRLLIEKCVELGADEILLYRFERSQHS-VSL 116

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           ++       AA+QC     P +        +++N D + + +  D   GS N LE    +
Sbjct: 117 EKSLLVVREAAKQCRRYLFPKV-------KMVENLDFDEKAITLDPD-GSVNLLE----M 164

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
               ++ I++GPEGG+   EKE L        ++LG +ILR +TAA+  +  +   
Sbjct: 165 DVSGSITIVVGPEGGFSEREKELLKQR--TILVNLGRKILRFETAAILTVGYIALR 218


>gi|171743048|ref|ZP_02918855.1| hypothetical protein BIFDEN_02173 [Bifidobacterium dentium ATCC
           27678]
 gi|306822853|ref|ZP_07456229.1| RsmE family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|171278662|gb|EDT46323.1| hypothetical protein BIFDEN_02173 [Bifidobacterium dentium ATCC
           27678]
 gi|304553485|gb|EFM41396.1| RsmE family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
          Length = 271

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+++GD + L +GK     + +    + I  +V    R
Sbjct: 27  ELNAGWKLTLPASVRRHAIQAMRLEDGDELQLSDGKGLRIHAVLRDAQQGI-AEVLRFGR 85

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131
                  +  + +  KT   +  I  + ++G+  + P     +  +      DR  R   
Sbjct: 86  ESQPTIRLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDRKWRQVL 145

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP 188
           ++A EQ      P +    T + ++      C    +V       ++  ++   AIA + 
Sbjct: 146 VAATEQSRRSWSPELGECVTSKQVVAICRRACVHGDLVIILHQDATKTWIQIEQAIAGLS 205

Query: 189 N----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +          + +++GPEGG    E  +         + LG  ILR+ TA   A++L+ 
Sbjct: 206 DKCLEDGRRRTIYVVVGPEGGISDAEVASFTEAGAEVCV-LGNNILRASTAGPVALSLLA 264

Query: 239 AICGDW 244
              G +
Sbjct: 265 RALGRF 270


>gi|283455941|ref|YP_003360505.1| hypothetical protein BDP_1039 [Bifidobacterium dentium Bd1]
 gi|283102575|gb|ADB09681.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1]
          Length = 265

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 18/246 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+++GD + L +GK     + +    + I  +V    R
Sbjct: 21  ELNAGWKLTLPASVRRHAIQAMRLEDGDELQLSDGKGLRIHAVLRDAQQGI-AEVLRFGR 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHYNMDR-VRTYT 131
                  +  + +  KT   +  I  + ++G+  + P     +  +      DR  R   
Sbjct: 80  ESQPTIRLALVQALAKTGHDEQAIDTATQIGVDEVIPWQADRSIAKWKAGRTDRKWRQVL 139

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAIAHIP 188
           ++A EQ      P +    T + ++      C    +V       ++  ++   AIA + 
Sbjct: 140 VAATEQSRRSWSPELGECVTSKQVVAICRRACVHGDLVIILHQDATKTWIQIEQAIAGLS 199

Query: 189 N----------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +          + +++GPEGG    E  +         + LG  ILR+ TA   A++L+ 
Sbjct: 200 DKCLEDGRRRTIYVVVGPEGGISDAEVASFTEAGAEVCV-LGNNILRASTAGPVALSLLA 258

Query: 239 AICGDW 244
              G +
Sbjct: 259 RALGRF 264


>gi|51598615|ref|YP_072803.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi]
 gi|51573186|gb|AAU07211.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 243

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           YH+L +V R+K+GD + +         S+I  +G + I+F      + +    ++    S
Sbjct: 24  YHHLVNVRRLKKGDKLNILLKDKESRTSEIVKIGSNFIKFATNKIDKIEKNNFEISIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
            +K  ++D ++++ VE+G+  I  +   ++       +T     R       A +Q    
Sbjct: 84  SLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGNQ 143

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P I       +L  ++      V       S   L K  +  +   + I+IGPEG + 
Sbjct: 144 IVPKINFYNNFFYLPYSFCTTKYYVAH----QSGMILSKNESFDNFSKIGIIIGPEGCFS 199

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             E        F   +     +LR+DTA + ++A  +A+ GD+
Sbjct: 200 KPEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLAYFKALLGDY 241


>gi|89895873|ref|YP_519360.1| hypothetical protein DSY3127 [Desulfitobacterium hafniense Y51]
 gi|219670302|ref|YP_002460737.1| hypothetical protein Dhaf_4296 [Desulfitobacterium hafniense DCB-2]
 gi|89335321|dbj|BAE84916.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540562|gb|ACL22301.1| protein of unknown function DUF558 [Desulfitobacterium hafniense
           DCB-2]
          Length = 245

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 32/236 (13%)

Query: 7   LKRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
           + R  +     +        G +  +L  VLR+  GD I+ F+    E+ + ++ + + S
Sbjct: 1   MHRFKISE---LGNHVFWLKGPEREHLVRVLRLAVGDRIIGFDNTGAEYKAVVNKIEEQS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
           +   +  Q   + +     Y+ +   K  +++++IQK  E+GM  + P+ T+        
Sbjct: 58  VTCGILEQDYPEVEAVTRIYLAAGLSKGEKMEWVIQKGTELGMAGLIPLRTKRAVMKLEG 117

Query: 119 -NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
                 ++R +  +  AA+Q   +  P I+  T  + L        Q +   E   +   
Sbjct: 118 SKAADRVERWQKISGEAAKQSHRVREPQIFSVTDWQGLKALLPPTTQWLIPYENEKTRTL 177

Query: 178 LEKLHAIAHIPNVAILI----------GPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
              L   +    +A++I                                +SLGPRI
Sbjct: 178 SSVLKDFSSQEPIALIIGPEGGFEEGE----------VLWAQEHLNAQSISLGPRI 223


>gi|152991316|ref|YP_001357038.1| 16S ribosomal RNA methyltransferase RsmE [Nitratiruptor sp.
           SB155-2]
 gi|151423177|dbj|BAF70681.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 220

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 103/236 (43%), Gaps = 21/236 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSI 65
           ++  FV  P       +  G+ Y+Y+  V R ++G+ I + N +DG  +  +I  V +  
Sbjct: 1   MQ--FVYHPKAGVQTLQIEGETYNYIFKVRRHRKGETIAIRNMEDGTLYWYEIVEVSRRE 58

Query: 66  RFKVEY--QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122
                   + +    +     I+  +    ++  +    E+G+  I  V    +Q     
Sbjct: 59  AVLELRKSEKKEVEPKRFFHLIWCIVDPKTVEKTLPMLNEIGVSKITFVYCDRSQKNFKL 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++++R   I++++QC    L  +    +L+ ++K ++    + F +E     +++E+  
Sbjct: 119 KLEKLRKILINSSQQCGRSRLMELEILLSLDEVIKKYNDIVLVDFCEEKLSCTDNVER-- 176

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                    +LIGPEGG   EE+     +  +      P +LRS+TAAVA  + V 
Sbjct: 177 ---------VLIGPEGGVTKEERALFEKVKGLDT----PMVLRSETAAVATASKVM 219


>gi|330841125|ref|XP_003292554.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum]
 gi|325077196|gb|EGC30925.1| hypothetical protein DICPUDRAFT_157290 [Dictyostelium purpureum]
          Length = 297

 Score =  144 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 107/282 (37%), Gaps = 64/282 (22%)

Query: 8   KRLFVDF--PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           +R F++        +  + SG Q +++   LR+K G+ I LF+      ++KI  + K+ 
Sbjct: 3   RRFFINEFPSFLKGSILQLSGQQNNHVKT-LRLKVGNTIELFDSNGKNGVAKIIEINKNE 61

Query: 66  RFK----VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
                  +  +S +  + + +    S  K  R ++MI+K  E+G+  +  + T +++++ 
Sbjct: 62  TILQLENLGIESTNSEEINKIDIATSLPKLARAEWMIEKLSEIGISNLILLETEFSKSSP 121

Query: 122 Y-------NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK-----NWDHNCQ---IV 166
                    +DR     I +++Q     +  I PP +L   LK       + +C+   + 
Sbjct: 122 QSSSITNNKLDRFERIVIESSKQSRNNQIMNIIPPVSLNQFLKDRFINQKEGDCKYSHVF 181

Query: 167 FADETCGSENSL--------------------------EKLHAIAHIPNVAILIGPEGGY 200
             D   G E  L                               I    ++ + IG EGG+
Sbjct: 182 IGDPYQGKELPLVLDDIKQEQQQLQQKQPQQPQQPQQQSNKAIIKKPKDILLFIGAEGGF 241

Query: 201 HSEEKETLHSLPFVTPLS-----------LGPRILRSDTAAV 231
              E          + +S           +G  ILR +TAA+
Sbjct: 242 SDREL-----YNIQSVVSNRNDSQLYLTKMGNNILRMETAAI 278


>gi|257055398|ref|YP_003133230.1| hypothetical protein Svir_13560 [Saccharomonospora viridis DSM
           43017]
 gi|256585270|gb|ACU96403.1| conserved hypothetical protein TIGR00046 [Saccharomonospora viridis
           DSM 43017]
          Length = 243

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 15/245 (6%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV----GKSIR 66
           F+   L         G++ H+   V R++EG+ + L +G+ G        V      ++ 
Sbjct: 2   FLVPSLPDTGFAVLEGEEAHHAVTVRRLREGERLALSDGRGGLADCVAHAVHPGRNPTVE 61

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------N 119
            +VE           V    +  K +R +  ++ + E G+ A+ P     +         
Sbjct: 62  LRVETTRHVSAPALRVTVAQALAKGDRGELAVETATEAGVDAVVPWRAARSVARWDDGPR 121

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + + R    +AA+Q     +P +  P T   L          +  D    SE+ ++
Sbjct: 122 GAKALAKWRATARAAAKQARRAWVPEVTEPMTTRQLAARIAETDLALVLD-GDASESFVD 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                     + +++GPEGG   EE+ T         + LGP +LR+ TAA  A+  + A
Sbjct: 181 V--DFPEEGELLLVVGPEGGVAPEERATFVEAG-ARCVRLGPTVLRTSTAATVALGALGA 237

Query: 240 ICGDW 244
           +   W
Sbjct: 238 LTARW 242


>gi|213692457|ref|YP_002323043.1| protein of unknown function DUF558 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523918|gb|ACJ52665.1| protein of unknown function DUF558 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458602|dbj|BAJ69223.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 265

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 91/247 (36%), Gaps = 20/247 (8%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    +         +    +R+K GD++ L +G      + +    ++   +V    R
Sbjct: 21  ELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQA-VMADPEAGLAEVVEVGR 79

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR----VRTY 130
              + + +  I +  KT   +  I  + ++G+  + P     +    + + R      + 
Sbjct: 80  EPEQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSI-AKWKVGRTDKKWNSV 138

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGS--------ENS 177
             +A EQ      P +    + + ++      C      IV   +   +           
Sbjct: 139 LDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQL 198

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +E+         V++++GPEGG   +E         V+ + LG  ILR+ TA   A++L+
Sbjct: 199 VERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCV-LGHNILRAATAGPVALSLL 257

Query: 238 QAICGDW 244
             + G +
Sbjct: 258 SRVLGRY 264


>gi|320010893|gb|ADW05743.1| protein of unknown function DUF558 [Streptomyces flavogriseus ATCC
           33331]
          Length = 248

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 14/226 (6%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV- 69
           FV   L    +    G +  +   V R+  G++++L +G+       +       R  V 
Sbjct: 6   FVVEQLPGGPEFVLDGPEGRHAVSVRRLNPGEDLVLTDGRGRWAEGVVRAAEGKDRLLVT 65

Query: 70  --EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
                         +  + +  K +R +  ++   E G+ AI P                
Sbjct: 66  GLVSVHEEPAPAPRITVVQALPKGDRGELAVETMTETGVDAIVPWQAARCITQWKGDRGL 125

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ--IVFADETCGSENSLE 179
            ++ + R+    A +Q   +  P +    T + +           ++  D   GSE    
Sbjct: 126 KSLAKWRSTAREAGKQSRRVRFPEVANAMTTKQVAALLAGADFAGVLHEDRDSGSEPLAT 185

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
               +     + +++GPEGG   +E     +        LGP +LR
Sbjct: 186 A--ELPAEGTIVLVVGPEGGVSPQELAA-FAEAGAPAYRLGPSVLR 228


>gi|84496856|ref|ZP_00995710.1| hypothetical protein JNB_05015 [Janibacter sp. HTCC2649]
 gi|84383624|gb|EAP99505.1| hypothetical protein JNB_05015 [Janibacter sp. HTCC2649]
          Length = 247

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 11/220 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76
                   G +  + A V R + G+ + L +G       +++ V +  +  + E      
Sbjct: 18  AGDIVVLDGTEGRHAATVKRTRIGERLRLSDGVGRVVTGEVASVDRDRLTLRTESVEVVP 77

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT------RYTQNTHYNMDRVRTY 130
                   + +  K +R D  I+ + E+G+  + P                    +    
Sbjct: 78  EPSPRFVLVQALAKGDRDDQAIEAATELGVDEVVPWQASRSIVQWRGDRGAKAWAKWDAV 137

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            ++A +Q      P + P  T   L              E   +   L  +  +    +V
Sbjct: 138 LVAATKQSRRPRRPLLAPAATTAALADRIATGATAYVLHEDADA--PLAAI-TLPSDGDV 194

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230
            +++GPEGG   +E +TL +    + + LG  +LRS +A 
Sbjct: 195 LVIVGPEGGIAPDELDTLKAAG-ASIVRLGDTVLRSSSAG 233


>gi|15605735|ref|NP_213112.1| hypothetical protein aq_165 [Aquifex aeolicus VF5]
 gi|6226333|sp|O66552|RSME_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|158428333|pdb|2EGV|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sam
           Ligand
 gi|158428334|pdb|2EGV|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sam
           Ligand
 gi|158428335|pdb|2EGW|A Chain A, Crystal Structure Of Rrna Methyltransferase With Sah
           Ligand
 gi|158428336|pdb|2EGW|B Chain B, Crystal Structure Of Rrna Methyltransferase With Sah
           Ligand
 gi|2982897|gb|AAC06516.1| hypothetical protein aq_165 [Aquifex aeolicus VF5]
          Length = 229

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 93/226 (41%), Gaps = 15/226 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77
                    +  +   V R+++ +   + + +   ++ K+    K  I  ++  +  ++ 
Sbjct: 11  GNLLILREGEVKH-FRVRRIEKDEEFGVIH-EGKIYVCKVRREDKREISCEIVEELETKL 68

Query: 78  KQSDVQYIFSPIKTNR-LDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTYTI 132
              D+    S     + +D +++++ E+G+    P+I+  +    +      ++ +   I
Sbjct: 69  PPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVI 128

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
            A +Q        I  P  L  L+   + N  I+  +   G +     L A       ++
Sbjct: 129 EAMKQSRRPIPMEIKKPVRLSDLIPESEEN--IILDNFYEGVKPKDVNLEA----KTYSV 182

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           ++GPEGG+   E + L    F   + L P  LR++TA V+ ++++ 
Sbjct: 183 VVGPEGGFSKRESQILREKGF-KSVLLEPYTLRTETAVVSIVSILM 227


>gi|219685489|ref|ZP_03540307.1| conserved hypothetical protein [Borrelia garinii Far04]
 gi|219673045|gb|EED30066.1| conserved hypothetical protein [Borrelia garinii Far04]
          Length = 243

 Score =  143 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 14/224 (6%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
           YH+L +V R K+GD + +   KD E  + +I  +G + I+F      + +    ++    
Sbjct: 24  YHHLVNVRRFKKGDKLNIL-LKDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISIFI 82

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
           S +K  ++D ++++ VE+G+  I  +   ++       +T     R       A +Q   
Sbjct: 83  SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGN 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P I       +L  ++      V       S   L K  +  +   + I+IGPEG +
Sbjct: 143 QIVPKINFYNNFFYLPYSFCTTKYYVAH----QSGILLSKNESFDNFSKIGIIIGPEGCF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              E        F   +     +LR+DTA + ++A  +A+ GD+
Sbjct: 199 SKPEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLAYFKALLGDY 241


>gi|224005044|ref|XP_002296173.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209586205|gb|ACI64890.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 299

 Score =  143 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 76/276 (27%)

Query: 38  MKEGDNILLFNGKDGEWLSKI------------SYVGKSIRFKVEYQSRSQTKQSDV--- 82
           + E D I +F+G++GEWL+++              +GK  + K E  S        +   
Sbjct: 18  LSEKDCIRVFDGRNGEWLARVRVSPQHQEDVNSIDMGKRTKRKREITSLMAECIVQLSLQ 77

Query: 83  -------QYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYT----------------- 117
                    +F P+K   R+  MI+K  E+G+G + PV++  +                 
Sbjct: 78  TCQDDAPWVLFVPLKKQPRMKLMIEKCTELGVGRMIPVVSDRSAWMVSSNNDDLDVLYGG 137

Query: 118 QNTHYNM-DRVRTYTISAAEQCDILTLPFIYPPTTL------------------EFLLKN 158
            +   N+ D++    I AAEQC+ L++P I    +L                  E   + 
Sbjct: 138 NSDEENVFDKLELQAIEAAEQCERLSIPIITNEVSLGVQDDEANDRVWSVESLIEEWCRG 197

Query: 159 WDH------NCQIVFADETCG---SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL- 208
           W+         +++   E          L  + A+   P VA L+GPEGG+  EE+    
Sbjct: 198 WEERDVTADKRRLLVCRERGNDGTEGKVLPVIQALYDNPRVAFLVGPEGGWSPEEEAKFD 257

Query: 209 ---HSLPF----VTPLSLGPRILRSDTAAVAAMALV 237
                       V  +SLG  +LR++TA + A+   
Sbjct: 258 STCTKYQGKDSPVQCISLGSSVLRAETACMMAVGAW 293


>gi|219684646|ref|ZP_03539589.1| conserved hypothetical protein [Borrelia garinii PBr]
 gi|219672008|gb|EED29062.1| conserved hypothetical protein [Borrelia garinii PBr]
          Length = 243

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 14/224 (6%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
           YH+L +V R K+GD + +   KD E  + +I  +G + I+F      + +    ++    
Sbjct: 24  YHHLVNVRRFKKGDKLNIL-LKDKESRASEIVKIGSNFIKFATNKIDKIEKNNFEISIFI 82

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDI 140
           S +K  ++D ++++ VE+G+  I  +   ++       +T     R       A +Q   
Sbjct: 83  SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGN 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P I       +L  ++      V       S   L K  +  +   + I+IGPEG +
Sbjct: 143 QIVPKINFYNNFFYLPYSFCTTKYYVAH----QSGMLLSKNESFDNFSKIGIIIGPEGCF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              E        F   +     +LR+DTA + ++A  +A+ GD+
Sbjct: 199 SKPEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLAYFKALLGDY 241


>gi|306821074|ref|ZP_07454692.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550910|gb|EFM38883.1| RsmE family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 249

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 98/252 (38%), Gaps = 28/252 (11%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-- 64
           + R F+D  +  KT      +   +++ VLR+   D + + + +  E++ KI  +     
Sbjct: 5   MNRFFIDE-VAGKTNNIIDKEDIKHISKVLRLDIDDEVEIVDREKKEYIMKIVDIKNDNI 63

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH--- 121
              KV      +  +  V       K ++L+ + + + + G+  I PV  +    T    
Sbjct: 64  CLEKVSSVDIQREDEIKVILYQGIPKGSKLEDICKNTTQAGIYQIIPVRFKRCVATDVND 123

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + R++     +A+QC    +P I  P + + ++K+ + N   +   E   +    + +
Sbjct: 124 KKIQRLQKIMDESAKQCKRNEIPEIKMPLSFDEMMKDLEENDANILFYEDERNNTIRDFV 183

Query: 182 HAIAHIPN------------VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             I    +                         +E E +     +  LSLG RILR++ A
Sbjct: 184 QRIREKKDMKRIGIIIGPEGGI---------DEKELEVMKK-GDIDILSLGNRILRTEIA 233

Query: 230 AVAAMALVQAIC 241
           ++ A +++    
Sbjct: 234 SIIAKSILTYEL 245


>gi|300858951|ref|YP_003783934.1| hypothetical protein cpfrc_01534 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686405|gb|ADK29327.1| hypothetical protein cpfrc_01534 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206652|gb|ADL10994.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           pseudotuberculosis C231]
 gi|302331201|gb|ADL21395.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276895|gb|ADO26794.1| 16S ribosomal RNA methyltransferase RsmE [Corynebacterium
           pseudotuberculosis I19]
          Length = 256

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 91/238 (38%), Gaps = 16/238 (6%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRS 75
           +    +  G +  +   V R+  G+ I L +       + ++       +  +VE     
Sbjct: 24  VGEIARLDGAEGRHAVSVKRIVAGERIKLIDAHGAYAEALVTETSGKDRLAARVEISETQ 83

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRT 129
                 V    +  K+ R +  +    + G+ AI P   +             ++ + R 
Sbjct: 84  SPVGPSVTVFQAIPKSERSELAVDLLTQGGVDAIVPWEAQRCVAKWSGTKREKSVQKWRA 143

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
             ++AA+Q     +P I  P     L   LK    +  ++  ++   +  +L     +  
Sbjct: 144 AAVAAAKQSRRSAIPTIGSPINTSELALRLKTEGFDLVLMLHEDAQQAFAALP----LQQ 199

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
             ++A++IGPEGG   EE   L +        LGP +LR+ +A + A+A +  +   W
Sbjct: 200 ASSIALIIGPEGGIGQEESSELQAAG-ARLAKLGPEVLRTASAGIVALAAIGVLTSRW 256


>gi|116328412|ref|YP_798132.1| hypothetical protein LBL_1752 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331141|ref|YP_800859.1| hypothetical protein LBJ_1528 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121156|gb|ABJ79199.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124830|gb|ABJ76101.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 229

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 10/220 (4%)

Query: 21  QGKASGDQYHYLAHVLRM-KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           Q   + ++  +L   LR+  E  N+ + NG   EW+ ++    +    K           
Sbjct: 16  QFCLNKEEVSHL-KALRIFSEDKNLRILNGIGSEWIYEVKGNSRQGILKKTEVHVKPESI 74

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
           S +    +  K NRL++++QK  E+G+     +    +    +N+ R +     A+ Q  
Sbjct: 75  SAI--ATAIPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSK 132

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            + LP ++ P +L   L   ++    ++  +  G      +        N   ++GPEGG
Sbjct: 133 RIFLPEVFVPVSLNEFLNLQENLNLSIYQFDPKGKSEPKPEF-----FQNSIWIVGPEGG 187

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +  +E   L     +  +  G  IL+ +TA + A +L + 
Sbjct: 188 FREKEIRLLREKN-ILGVKAGNAILKIETAGIFAASLFRY 226


>gi|227548789|ref|ZP_03978838.1| protein of hypothetical function (DUF558) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079119|gb|EEI17082.1| protein of hypothetical function (DUF558) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 234

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 21/225 (9%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS-IRF 67
            F+        +G+  G +  +   V R+  G+ I+L +G        ++ + GK  +R 
Sbjct: 5   YFIAPE---PARGELDGAEGRHAVTVKRIGVGERIMLVDGAGTAAEIAVAEIRGKDYLRG 61

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +V   ++       +  + +  K  R +  +  +V+ G  AI P ++  T          
Sbjct: 62  EVLALTQVPQPTPRITVVQAIPKAERAELAVDLAVQGGADAIVPWLSNRTIARWPADKQG 121

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             + + +     AA+Q     +P +  P T   L +       +V  ++       +  +
Sbjct: 122 KQVAKWQAVAREAAKQSRRAWVPQVAEPVTTNQLRELVVGKQALVLHEDA------VAPI 175

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             +     V +++GPEGG   EE E L        + LGP +LR+
Sbjct: 176 SGVEFADEVFLIVGPEGGIGPEELEAL----GADAVKLGPEVLRT 216


>gi|308446109|ref|XP_003087098.1| hypothetical protein CRE_18396 [Caenorhabditis remanei]
 gi|308262620|gb|EFP06573.1| hypothetical protein CRE_18396 [Caenorhabditis remanei]
          Length = 410

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 17/218 (7%)

Query: 42  DNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKS 101
             + L +   G+W              +            V  + +  K +R +  ++++
Sbjct: 195 QAVELLDRTVGDWAEPAEAELVRSVLSLNEVRTEPEATPRVTLVQALAKGDRDERAVEQA 254

Query: 102 VEMGMGAIRPVITRYT----------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
            E G+  + P     +          +     + +       A++Q     +P +  P +
Sbjct: 255 TEFGVDRVVPWQAARSVSRWDGAGGAEKAAKGVAKWARIAREASKQSLRARVPEVGAPIS 314

Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHA-----IAHIPNVAILIGPEGGYHSEEKE 206
              L        + V A    G E +L    A      +    + +++GPEGG+   E +
Sbjct: 315 SGELRAAASDPDRAVIALHPRG-ERTLSDWAAGFAAGTSRPAEILLVVGPEGGFSDAELD 373

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
            L S      + LG  +LR+ +A  A +A++    G W
Sbjct: 374 ALESAGAEILV-LGTTVLRTSSAGPAGLAVLNVALGRW 410


>gi|163781828|ref|ZP_02176828.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883048|gb|EDP76552.1| hypothetical protein HG1285_03058 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 233

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 20/233 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY-VGKSIRFKVEYQSRSQT 77
            TQ   SG++  +L  V R++ G+ + +   ++  +L K+     K    ++E +  ++ 
Sbjct: 11  GTQFSISGEELKHLL-VRRVQIGEKVGII-WENKLYLCKVVEKNKKKALCEIEEEIETKI 68

Query: 78  KQSDVQYIFSP---IKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHYNMDRVRTY 130
            +  +    +    +KT   + ++QK+ E+G   + P+IT  +    +     MDR +  
Sbjct: 69  PKLKLTLYQAVTIELKT--FETIVQKATELGAAELVPLITERSFRRREVILKKMDRWKKV 126

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI-VFADETCGSENSLEKLHAIAHIPN 189
           +  A +Q        I  P  LE L    D N  +  F +        L  + +++ +  
Sbjct: 127 SKEAMKQSGRTYELSIREPALLEDLEPTSDLNILLDNFYEGKPIGSLELSSVESVSVVV- 185

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
                GPEGG+  EE E L S  F++ + L P +LR+DTAA   + ++  + G
Sbjct: 186 -----GPEGGFRREEGEHLRSKGFLS-VKLEPHVLRADTAATVGVGIIMNLAG 232


>gi|206896455|ref|YP_002247218.1| conserved surface protein, putative [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739072|gb|ACI18150.1| conserved surface protein, putative [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 242

 Score =  141 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 9/234 (3%)

Query: 9   RLFVDFPLCI--KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           R+FV+  L    +           Y+  VLR  +   I++F+G   E+++      KS+ 
Sbjct: 5   RVFVENSLIDLDERVVTIDKSLQRYIEQVLRGAQDCKIVVFDGSGKEYITTYDIETKSLV 64

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---N 123
            + +  S    K   +    +  K   +D +I    ++G+  + P+IT  T         
Sbjct: 65  IE-DVVSNCIQKSFSISLFQAVPKGTAMDDIIALCSQLGVDQVYPMITARTTVKQVGSNK 123

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           + R +   + + +     +   I  P  L   L  ++    ++F  E   + N       
Sbjct: 124 LMRWQRIALESCKVGGFCSTTEIKQPLFLRDALALFNEADLVLFLYENAEA-NLRNYTTE 182

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           I    ++A+++GPEGG+   E E L      T  SLG  I RS  AA  A+  +
Sbjct: 183 IERANHIALVVGPEGGFDPSEAEELSKRAITT--SLGAVIFRSRWAASVAVMAI 234


>gi|300780715|ref|ZP_07090569.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532422|gb|EFK53483.1| RsmE family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 235

 Score =  141 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 21/225 (9%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV--GKSIRF 67
              D P      G+  G +  +   V R++ G++I+L +G        ++ +    S+  
Sbjct: 6   FLCDDP----AAGRLDGPEGRHAVTVKRIEPGEHIMLIDGSGRTAEISVTEITGKDSLVG 61

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +V         +  V  + +  K+ R +  +  +V+ G   I P I+  T          
Sbjct: 62  EVVRVDDVPQPRPRVTVVQAIPKSERAELAVDLAVQGGADEIIPWISHRTIARWQGPKVA 121

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            N+++ +     AA+Q     +P +  P T   L +    +   V  ++   S   ++  
Sbjct: 122 KNVEKWQATAREAAKQSRRAWVPEVREPVTTNQLAELVRGHAAYVLHEDASTSIKDIDL- 180

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                + ++ +++GPEGG   +E   + +      +S+GP +LR+
Sbjct: 181 ----DVDHLYLIVGPEGGIGQKELAGIPAA----SISMGPEVLRT 217


>gi|216263941|ref|ZP_03435935.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
 gi|215979985|gb|EEC20807.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
          Length = 243

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 14/223 (6%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
           YH+L +V R+K+GD + +   KD E  + +I  +G + I+F      + +    ++    
Sbjct: 24  YHHLINVRRLKKGDKLNIL-LKDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISIFI 82

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDI 140
           S +K  ++D ++++ VE+G+  I  +   ++ +            R       A +Q   
Sbjct: 83  SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQSGN 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P I       +L  ++      V       S   L K  +  +   + I+IGPEG +
Sbjct: 143 KIVPKINFYNNFFYLPYSFCTTRYYVAH----QSGMLLSKNESFDNFSKIGIIIGPEGCF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            + E        F T +     +LR+DTA + ++A  + +  D
Sbjct: 199 SNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240


>gi|112789921|gb|ABI21599.1| Smu10A [uncultured organism]
          Length = 185

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 13/189 (6%)

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ----- 118
            +   V       +    V  + +  K +R +  ++ + E G+ A+ P            
Sbjct: 1   DLTLDVGQVVVEPSAAPRVVLVQALPKGDRGELAVELATEAGVDAVVPWQASRCVARWPD 60

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-DHNCQIVFADETCGSE 175
                    R +     AA+Q     +P + P  +   +          +V  +    S 
Sbjct: 61  AAKADKGRLRWQAAASEAAKQSRRYVVPEVLPAASTAGVAALVGQAALALVLHESATASL 120

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            S     A+    ++ +++GPEGG   +E     ++  +  + LGP++LR+ TAA  A+ 
Sbjct: 121 AS----TALPATGDLVLIVGPEGGIAGDELAAFEAVGAI-AVRLGPQVLRTSTAAAVALG 175

Query: 236 LVQAICGDW 244
            +  + G W
Sbjct: 176 AIGVLTGRW 184


>gi|226227302|ref|YP_002761408.1| hypothetical protein GAU_1896 [Gemmatimonas aurantiaca T-27]
 gi|226090493|dbj|BAH38938.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 240

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 12/223 (5%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           V   + +            ++  VLR++ G  I + NG+      ++  + K+       
Sbjct: 2   VADAIAVGATLALDEGAVRHI-RVLRLEAGAMIGVRNGQGSIGAGQLVRLSKTQAHVEIT 60

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD------ 125
           ++ S +    V  +      +R+ ++ +K+ E+G  + RPV+ R +++     +      
Sbjct: 61  EAVSVSPLPAVHLLVPVADRDRMLWLAEKAAELGATSWRPVLWRRSRSVSPRGEGVNFQA 120

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           +VR     A  Q +   LP  +P   LE  +       +IV   +    E     L A  
Sbjct: 121 KVRARMEGALAQSEGAWLPQPFPEANLERAVLAAPAGRRIVLDPD---GEPLTGALGAPL 177

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             P V I +GPEGG  ++E   L    F    SLGP ILR +T
Sbjct: 178 TAP-VVIAVGPEGGLEADEIADLEQAGFQRR-SLGPTILRFET 218


>gi|222625729|gb|EEE59861.1| hypothetical protein OsJ_12443 [Oryza sativa Japonica Group]
          Length = 501

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 44/264 (16%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
             + +  GD++ ++  VLR+   D + LF+G  G     I  V K        +      
Sbjct: 233 GEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGSDVKLLEDARLIA 292

Query: 79  QSDVQYIF-----SPIKTNR-------LDYM-------IQ-----------KSV------ 102
              +Q+       S  K ++       L+         IQ           K        
Sbjct: 293 PDGIQWHVYAAFGSIQKVDKGGSDVKLLEDARLIAPDGIQWHVYAAFGESHKLCALTVNT 352

Query: 103 ---EMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159
              E+ +     + +         +DR++   ++A +QC  +    + PP  +  L    
Sbjct: 353 GSLEL-VVLHLFLQSDAHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVV 411

Query: 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219
             +     A  +  S   L  L    +  +  +++GPEG +  EE   L +   V P+ L
Sbjct: 412 SQSKLAFVA--SAESPPLLSTLPKSCNEESGLLIVGPEGDFTEEEVNVLKASGAV-PVGL 468

Query: 220 GPRILRSDTAAVAAMALVQAICGD 243
           GP  LR +TA ++ ++ +  +  D
Sbjct: 469 GPCRLRVETATISLLSALM-LWSD 491


>gi|224534422|ref|ZP_03675000.1| conserved hypothetical protein [Borrelia spielmanii A14S]
 gi|224514524|gb|EEF84840.1| conserved hypothetical protein [Borrelia spielmanii A14S]
          Length = 243

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 12/222 (5%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           YH+L +V R+K+GD + +        +S+I  +G + I+F      + +    ++    S
Sbjct: 24  YHHLVNVRRLKKGDKLNILLKDKELRVSEIVNIGSNFIKFATNKIDKIEKNNFEISMFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
            +K  ++D ++++ VE+G+  I  +   ++       +T     R       A +Q    
Sbjct: 84  SLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDINSTSAKTLRFSKIIDEALKQSGNK 143

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P I       +L  ++      V       S  +L K     +   + I+IGPEG + 
Sbjct: 144 IVPKINFYNNFFYLPYSFCTTRYYVAH----QSGVTLSKNENFDNFSKIGIIIGPEGCFS 199

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + E        F   +     +LR+DTA + ++A  + +  D
Sbjct: 200 NSEIAFFKEKGF-NFVRFNTPVLRADTAIIYSLACFKVLLED 240


>gi|117927993|ref|YP_872544.1| hypothetical protein Acel_0785 [Acidothermus cellulolyticus 11B]
 gi|117648456|gb|ABK52558.1| protein of unknown function DUF558 [Acidothermus cellulolyticus
           11B]
          Length = 250

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 11/215 (5%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS-YVGKSIRFKVEYQSRSQ 76
           + T+    G +  +   V R++ G+ + L +G       ++S   G  +  ++  +    
Sbjct: 18  VGTELVLDGAEGRHATKVRRLRPGEQVDLVDGTGLRCAGRVSRSDGGKLVVRLTARLVEP 77

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTY 130
             Q  +  + + +K +  D  ++   E+G+  I P     +              R +  
Sbjct: 78  VPQPQLIVVQALVKGDAADEAVRTMTEVGVDGIVPWTAARSVVRWDAGRAAAARHRWQQI 137

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
              A +Q      P I    T   + +        +   ET         +     +  V
Sbjct: 138 AREAGKQARRARFPEIAEVATTAEVCRRLRGAALGIVLLETASERVGGVTVPRAGDVVVV 197

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
               GPEGG+  +E +   S   V  + LGP +LR
Sbjct: 198 V---GPEGGFRDDEVDAFRSAGAV-FVRLGPTVLR 228


>gi|224531913|ref|ZP_03672545.1| conserved hypothetical protein [Borrelia valaisiana VS116]
 gi|224511378|gb|EEF81784.1| conserved hypothetical protein [Borrelia valaisiana VS116]
          Length = 243

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 12/222 (5%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           YH+L +V R+K+GD + +        +S+I  +G + I+F      + +    ++    S
Sbjct: 24  YHHLVNVRRLKKGDKLKILLKDKELRMSEIVKIGSNFIKFATNKIDKIEKNNFEISIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDIL 141
            +K  ++D ++++ VE+G+  I  +    + +            R       A +Q    
Sbjct: 84  SLKGKKIDSVLRQIVEIGVSEINIINADRSVSKIDISNTSAKTLRFSKIIDEALKQSGNK 143

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P I       +L  ++      V       S   L K  +  +   + I+IGPEG + 
Sbjct: 144 IVPKINFYNNFFYLPYSFCTTKYYVAH----QSGMLLGKNESFENFSKIGIIIGPEGCFS 199

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             E        F   +     ILR+DTA + ++A  +A+  D
Sbjct: 200 DSEISFFKEKDF-NFVRFNTPILRADTAIIYSLAYFKALLED 240


>gi|111115181|ref|YP_709799.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo]
 gi|110890455|gb|ABH01623.1| conserved hypothetical protein [Borrelia afzelii PKo]
          Length = 243

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 14/223 (6%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGKS-IRFKVEYQSRSQTKQSDVQYIF 86
           YHYL +V R+K+GD + +   KD E  + +I  +G + I+F      + +    ++    
Sbjct: 24  YHYLINVRRLKKGDKLNIL-LKDKELRASEIIEIGSNFIKFATNKIDKIEKSNFEISIFI 82

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDI 140
           S +K  ++D ++++ VE+G+  I  +   ++ +            R       A +Q   
Sbjct: 83  SSLKGKKIDSVLRQVVEIGVSEINIINADHSVSKIDISNTSAKTLRFSKIIDEALKQSGN 142

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
             +P I       +L  ++      V       S   L K  +  +   + I+IGPEG +
Sbjct: 143 KIVPKINFYNNFFYLPYSFCTTRYYVAH----QSGMLLSKNESFDNFSKIGIIIGPEGCF 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            + E        F T +     +LR+DTA + ++A  + +  D
Sbjct: 199 SNSEIAFFKEKDF-TFVRFNTPVLRADTAIIYSLAYFKVLLED 240


>gi|183220665|ref|YP_001838661.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910767|ref|YP_001962322.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775443|gb|ABZ93744.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779087|gb|ABZ97385.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 226

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 103/226 (45%), Gaps = 18/226 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMK-EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73
           P   K   + + ++ ++L   LR++ E + I + +G+ G +    +   K + F+ E   
Sbjct: 12  PFFKKESIQLTKEELNHL-RALRLQSENNIIQIRDGEGGLYNYLYTPNSKDLVFQNE--E 68

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
               K +  +   +  K NRLD+ +QK  E+G+  +  ++ R++    +N++R       
Sbjct: 69  FVPRKTNRKKIAIALPKGNRLDFFLQKVTEIGLDEVIFLVFRHSIRKEFNLERAEKIVKE 128

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           AA Q     +  +      +  ++    +  +VF       ++  +       IP    +
Sbjct: 129 AAAQSKQTEILNLS-IEPAKDWMETHKESL-VVFHP---FGKDIFQIQSLAGKIP----V 179

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSL--GPRILRSDTAAVAAMALV 237
           IGPEGGYH++E+E +     +  L+L  G  +LR++T  + A + +
Sbjct: 180 IGPEGGYHADEEEWMEKNQ-IPKLTLPGG--VLRTETCGIVAASFL 222


>gi|117924870|ref|YP_865487.1| hypothetical protein Mmc1_1572 [Magnetococcus sp. MC-1]
 gi|117608626|gb|ABK44081.1| protein of unknown function DUF558 [Magnetococcus sp. MC-1]
          Length = 227

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 14/205 (6%)

Query: 39  KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMI 98
           + G+   + +     + +++   G S+R         +     V  + +     R  +++
Sbjct: 21  RVGELFTVCH-AGCFYRARLLADGHSMRVFATLSYSPEPPAPRV-LMQAMPNRERFLWIL 78

Query: 99  QKSVEMGMGAIRPVITRYTQNTH----YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           +K VE+G  AI PVIT  + +                  AA QC    LP +  P TLE 
Sbjct: 79  EKGVELGATAIYPVITEKSYHEDAPALAKQGGWVRILQRAARQCRRAVLPRVGEPLTLEQ 138

Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
            ++      Q          + S   L        V + +GPEGG+  ++     +   V
Sbjct: 139 AIEQGVGMAQWYL-------DLSPTPLLGEPLQGAVQLFVGPEGGWGEQDLAIFRARG-V 190

Query: 215 TPLSLGPRILRSDTAAVAAMALVQA 239
            P +LGPR+LR++TAA+ A++ + A
Sbjct: 191 APRNLGPRLLRTETAALMALSWIAA 215


>gi|195943133|ref|ZP_03088515.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a]
          Length = 231

 Score =  138 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 17/238 (7%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQ--YHYLAHVLRMKEGDNILLFNGKDGEWLS-KISYVGK 63
           +K++ +D   C+        D   YH+L +V R+K+GD + +   KD E  + +I  +G 
Sbjct: 1   MKQIVLDEN-CLAGNFIIVKDAKIYHHLINVRRLKKGDKLNIL-LKDKELRASEIVKIGS 58

Query: 64  S-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ---- 118
           + I+F      + +    ++    S +K  ++D ++++ VE+G+  I  +    +     
Sbjct: 59  NFIKFTTNKIDKIEKNNFEISIFISSLKGRKIDLVLRQIVEIGVSEINIINADRSVSKID 118

Query: 119 --NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
             N    + R       A +Q     +P I       +L  ++      V       S  
Sbjct: 119 ISNASAKILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHP----SGM 174

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
            L K  +  +   + I+IGPEG +   E        F   +     ILR+DTA + ++
Sbjct: 175 ILSKNESFDNFAKIGIIIGPEGCFSESEIVFFKEKGF-NFIRFNTPILRADTAIIYSL 231


>gi|145219108|ref|YP_001129817.1| hypothetical protein Cvib_0293 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205272|gb|ABP36315.1| protein of unknown function DUF558 [Chlorobium phaeovibrioides DSM
           265]
          Length = 247

 Score =  138 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 31/233 (13%)

Query: 10  LFVDF-PLCIKT-QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IR 66
            ++    L  +T   +  GD++H++A VLR K GD + + +G       ++  + K  + 
Sbjct: 4   FYIPRGTLADETASLRIEGDEFHHIARVLRKKTGDRLRVTDGTGRVAEIEVVGLAKRWLE 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
            +V  +S      + V    S +K   R D  ++K+ E+G+G I P+I+  T      + 
Sbjct: 64  GEVLSRSVVPRPSTRVTVALSMLKAPARFDMFLEKATELGVGGIIPMISHRTVSQPSGEK 123

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS----- 174
               + R     +SAA Q     LP +  P     +L    ++ +++  +E+  +     
Sbjct: 124 LAGKLQRWNNIILSAARQSKCFHLPELIGPLPFRSVLALEGYDNRLMPYEESSEAPRVNY 183

Query: 175 --ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +N+L  +                        E   +  F T LSLG  ILR
Sbjct: 184 SGKNTLFLIGGEGGFTGEE-------------AEEARASGFTT-LSLGRSILR 222


>gi|224418688|ref|ZP_03656694.1| 16S rRNA m3U1498 methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 235

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 32/240 (13%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS 64
            ++  F+             G+ YH+L H  R K+ +++ L N +D   +   I+ + K 
Sbjct: 15  KMQ--FIIHKDAGNESLILDGEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKK 72

Query: 65  ---IRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSV----EMGMGAIRPVITRY 116
              +R + + ++ SQ              K      +I+K++    E+ +  I     +Y
Sbjct: 73  YATLRLESKLETPSQNPSKGHLIWAMIDPK------IIEKTLPFLNELNIYKISFFYAQY 126

Query: 117 TQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
           +Q     N++R++    ++  QC  +TL  I     L+ +L+ + +   + F  +    E
Sbjct: 127 SQKNFKLNLERIQKILENSCMQCGRITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--E 184

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +SLE          + IL+G EGG+  +E+E L S P  T +     ILRS+TA + AM+
Sbjct: 185 SSLE----------IPILVGAEGGFSPQERELLKSNPKYTAIH--SNILRSETATIYAMS 232


>gi|227874773|ref|ZP_03992926.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC
           35243]
 gi|227844548|gb|EEJ54704.1| protein of hypothetical function DUF558 [Mobiluncus mulieris ATCC
           35243]
          Length = 337

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 58/285 (20%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L   T+ + +G + H+ + V R++ G+ + L +G+     +++   G  +RF++    R 
Sbjct: 55  LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113

Query: 76  QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127
           +      +  I +  K  R    ++ + E+G   + P      ++R+          ++ 
Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173

Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161
           +   +SA +Q     L  +                 PP++               +    
Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233

Query: 162 NCQIVFADETCGSENSLEKLHAIAHIP----------------------NVAILIGPEGG 199
             ++    E+     S+         P                       +A+++GPEGG
Sbjct: 234 GGRVFVLHESASERLSVLLRAISREAPHEPGGELSGAGNLGAGNPGGTMEIAVVVGPEGG 293

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               E E   ++     + LG  +LR  TA   A+A++QA  G W
Sbjct: 294 ITEGELEGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 337


>gi|269976809|ref|ZP_06183784.1| protein involving differentiation [Mobiluncus mulieris 28-1]
 gi|269935006|gb|EEZ91565.1| protein involving differentiation [Mobiluncus mulieris 28-1]
          Length = 337

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 104/285 (36%), Gaps = 58/285 (20%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L   T+ + +G + H+ + V R++ G+ + L +G+     +++   G  +RF++    R 
Sbjct: 55  LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113

Query: 76  QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127
           +      +  I +  K  R    ++ + E+G   + P      ++R+          ++ 
Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173

Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161
           +   +SA +Q     L  +                 PP++               +    
Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233

Query: 162 NCQIVFADETC--------------------GSENSLEKLHAIAHIP--NVAILIGPEGG 199
             ++    E+                     G  +  E L A        +A+++GPEGG
Sbjct: 234 GGRVFVLHESASERLSVLLRAISREAPHEPGGELSGAENLGAGNPGGTMEIAVVVGPEGG 293

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               E E   ++     + LG  +LR  TA   A+A++QA  G W
Sbjct: 294 ITEGELEGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 337


>gi|224373445|ref|YP_002607817.1| 16S ribosomal RNA methyltransferase RsmE [Nautilia profundicola
           AmH]
 gi|223589351|gb|ACM93087.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 219

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 30/233 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65
           ++  FV FP     Q   +GD++ YL  V R+K+ + + + N KD   ++ KI  + K  
Sbjct: 1   MQ--FVYFP-NPGVQITLTGDEHKYLFKVRRVKKNELVKIRNLKDDYLYIYKIEAINKKE 57

Query: 66  RFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122
                VE +      +      +  I    ++  +    E+G+G I  +   Y+Q     
Sbjct: 58  AILSLVEKKLSPNKPEKFFHLAWCIIDPKNIEKALPSLNEIGVGKITFIYCDYSQKNFKL 117

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
            ++R+    I++ +QC   +L  I    + +   + +++   + F  +            
Sbjct: 118 KLERLTKILINSCQQCGRSSLMEIEFLDSSDEFFQKYNNFSALDFDGKEIKC-------- 169

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHS----LPFVTPLSLGPRILRSDTAAV 231
                 +   LIGPEGG+   E++          F         ILRS+TAAV
Sbjct: 170 --GFYSSYPFLIGPEGGFSDNERKYFKEKFRLKGF---------ILRSETAAV 211


>gi|68535674|ref|YP_250379.1| hypothetical protein jk0602 [Corynebacterium jeikeium K411]
 gi|68263273|emb|CAI36761.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 259

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 92/236 (38%), Gaps = 26/236 (11%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           +  P+ +  + + +G +  + + V R++ G+ +++ +G         S++G     +V  
Sbjct: 10  IPEPVVVGDRFRLTGAEAKHAS-VKRLEVGEGLVVTDGAARAVQG--SFLGD-ATVEVID 65

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDR 126
                T    V  + +  K++R +  +  +V+ G   I P      I ++         +
Sbjct: 66  ILELPTPHPRVTVVQAIPKSDRAELAVDLAVQAGADRIVPWAARRAIAKWDGKEAKAHAK 125

Query: 127 VRTYTISAAEQCDILTLPFIYP----PTTLEFLL--------KNWDHNCQIVFADETCGS 174
                 +AA+Q   L +P +      P  L  +L         +      +V  +E    
Sbjct: 126 WDNAARAAAKQSRRLQIPEVTQLVRTPQELARVLGMGEASAGNDASAVRVLVLHEEATEP 185

Query: 175 ENSLEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
             +         + A    +A+++GPEGG   EE      L   TP+ LGP +LR+
Sbjct: 186 LPAAVTAAVGSASDAGATEIALVVGPEGGISPEELAEFEQLG-ATPVRLGPEVLRT 240


>gi|253826777|ref|ZP_04869662.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT
           98-5491]
 gi|313142210|ref|ZP_07804403.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510183|gb|EES88842.1| hypothetical protein HCAN_0119 [Helicobacter canadensis MIT
           98-5491]
 gi|313131241|gb|EFR48858.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 220

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 32/239 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS- 64
           ++  F+             G+ YH+L H  R K+ +++ L N +D   +   I+ + K  
Sbjct: 1   MQ--FIIHKDAGNESLILDGEAYHHLFHSRRTKKTESLQLRNLRDYYCYTYSIADLSKKY 58

Query: 65  --IRFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSV----EMGMGAIRPVITRYT 117
             +R + + ++ SQ              K      +I+K++    E+ +  I     +Y+
Sbjct: 59  ATLRLESKLETPSQNPSKGHLIWAMIDPK------IIEKTLPFLNELNIYKISFFYAQYS 112

Query: 118 QN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           Q     N++R++    ++  QC  +TL  I     L+ +L+ + +   + F  +    E+
Sbjct: 113 QKNFKLNLERIQKILENSCMQCGRITLLEIEMLENLQEVLEKYPNTGVLDFGGKAL--ES 170

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           SLE          + IL+G EGG+  +E+E L S P  T +     ILRS+TA + AM+
Sbjct: 171 SLE----------IPILVGAEGGFSPQERELLKSNPKYTAIH--SNILRSETATIYAMS 217


>gi|5802843|gb|AAD51805.1|AF170561_1 SdrD [Streptomyces coelicolor A3(2)]
          Length = 216

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 70/198 (35%), Gaps = 13/198 (6%)

Query: 37  RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY---QSRSQTKQSDVQYIFSPIKTNR 93
           R++ G++++L +G+       +       R  V           +Q  +  + +  K +R
Sbjct: 3   RLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVPGGVREEPAEQPRITVVQALPKGDR 62

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            +  ++   E+G+ AI P            +     + + R     A +Q   +  P + 
Sbjct: 63  GELAVETMTEVGVDAIVPWAASRCITQWKGERGLKALGKWRATAREAGKQSRRVRFPDVA 122

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
              + + +              E+     S  +L A     ++ +++GPEGG   +E   
Sbjct: 123 DAASSKQVASLLAAADFAAVLHESGDVPLSDAELPAS---GDIVLVVGPEGGVSPDELAL 179

Query: 208 LHSLPFVTPLSLGPRILR 225
                   P  LG  +LR
Sbjct: 180 FAEAG-ADPYRLGRSVLR 196


>gi|242310102|ref|ZP_04809257.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523399|gb|EEQ63265.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 220

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 20/235 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65
           ++  F+      +   K  G+ YH++    R K+ +++ L N KD   ++  I+ + K  
Sbjct: 1   MQ--FIIHKNAGEATLKLEGETYHHIFQSRRTKKSESLHLRNLKDSNLYIYNITNLSKKD 58

Query: 66  RFKVEYQSRSQTK--QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122
                  S++           I++ I    ++  +    E+ +  I      Y+Q     
Sbjct: 59  ATLTLQSSQNTPLKNPPKGHLIWAMIDPKNIEKTLPFLNELNLQKITFFYAEYSQKNFKL 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N++R++    ++ EQC  +TL  I     L+ +L+ + +   + F     G E     L 
Sbjct: 119 NLERIQRILENSCEQCGRITLLEIEVLENLQEVLEKYPNAGVLDF-----GGEEPKCSLE 173

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  + IL+G EGG+  +E+E L + P  T  S    ILRS+TAA+ A+A +
Sbjct: 174 -------IPILVGTEGGFSKKEREALKNNPKYTATSC--NILRSETAAIYAIARI 219


>gi|255030926|ref|ZP_05302877.1| 16S ribosomal RNA methyltransferase RsmE [Listeria monocytogenes
           LO28]
          Length = 167

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 100 KSVEMGMGAI------RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           KS E+G          R V+    +     ++R++     AAEQ     +P ++   + +
Sbjct: 9   KSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFK 68

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAI----AHIPNVAILIGPEGGYHSEEKETLH 209
            L+    H   ++ A E    E     L ++        +V  + GPEGG   + +  L 
Sbjct: 69  ELMFGHVHYDFVIAAYEESAREGEDSALASLFQTMKPGQSVLCIFGPEGGISEK-ELLLL 127

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
                    LGPRILR++TA +  ++       D Y
Sbjct: 128 EEANAKLAGLGPRILRTETAPLYVLSAASFYF-DLY 162


>gi|289642694|ref|ZP_06474834.1| protein of unknown function DUF558 [Frankia symbiont of Datisca
           glomerata]
 gi|289507524|gb|EFD28483.1| protein of unknown function DUF558 [Frankia symbiont of Datisca
           glomerata]
          Length = 279

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 76/257 (29%), Gaps = 50/257 (19%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQ 79
           +    G +  + A V R++ G+ + + +G+       +    +  I   VE +     + 
Sbjct: 6   ELTLVGAEGRHAATVRRLRPGERLDVTDGRGVVAECTVVRCRRDEIDCAVERRVVHPARL 65

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTIS 133
             +  + +  K +R +  ++   E+G+  I P     +      +      DR       
Sbjct: 66  PRLVVVQALAKGDRGELAVELMTEVGVDEIVPWAASRSVVRWAGERGARAHDRWSATARE 125

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS------------------- 174
           AA+Q   +  P +  PT  +            V   E                       
Sbjct: 126 AAKQSRRVFWPRVTAPTDTDAAAARLTAAELAVVLHEDAAEPLTRVLAAATTAATGSFAT 185

Query: 175 -----------------------ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
                                        L        + +++GPEGG    E E   + 
Sbjct: 186 ATAAAGPPATTASVAGSATAGLTATRAPALPDAVPAAEIVVVVGPEGGITDAELEVFTAA 245

Query: 212 PFVTPLSLGPRILRSDT 228
               P  LGP +LR+ T
Sbjct: 246 GG-RPSRLGPTVLRTST 261


>gi|270283937|ref|ZP_05965237.2| RNA methyltransferase, RsmE family [Bifidobacterium gallicum DSM
           20093]
 gi|270277731|gb|EFA23585.1| RNA methyltransferase, RsmE family [Bifidobacterium gallicum DSM
           20093]
          Length = 261

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 23/252 (9%)

Query: 13  DFPLCIKT-----QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           D PL   T       +       +    +R+K GD + L NGK     + +    +S   
Sbjct: 10  DSPLNGDTLHEGWVIELPDAVRRHAMGAMRLKNGDALQLSNGKGLRINASVLD-DQSGSV 68

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--NMD 125
           +V         +  +  I +  KT   +  I  + ++G   I P     +         D
Sbjct: 69  QVRSFETEPEPRIRLALIQALAKTGHDEQAIDMATQIGADEIIPWQADRSIARFKQGRTD 128

Query: 126 R-VRTYTISAAEQCDILTLPFIYPPTT---LEFLLKNW---DHNCQIVFADETCGSENSL 178
           R  +   ++A EQ     +P +        +E + +          ++  DET    +  
Sbjct: 129 RKWQQTLVAATEQSRRAWIPKLGECVRSSGVEAICRRACVHGDVVVVLHQDETTHWSHVE 188

Query: 179 EKLHAI-------AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
           E + A+            V +++GPEGG   +E         +  + LG  ILR+ +A  
Sbjct: 189 EAVQAMMNRTFEDERARTVYVVVGPEGGISEQEVAQFAKAGALCCV-LGSTILRAASAGP 247

Query: 232 AAMALVQAICGD 243
            A+AL+    G 
Sbjct: 248 VALALLSRTTGR 259


>gi|300933260|ref|ZP_07148516.1| hypothetical protein CresD4_04275 [Corynebacterium resistens DSM
           45100]
          Length = 251

 Score =  136 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 22/220 (10%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           +  + + +G +  + A V R+K+G+ +++ +G D    +    V +  + +V       T
Sbjct: 20  VGQRFQLTGAEAKH-ADVKRLKDGEALVITDGSDQAVRA----VWRGPQVEVTEVLAIAT 74

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDRVRTYTI 132
            +  V  + +  K+ R +  +   V+ G   I P      I +++        +      
Sbjct: 75  PRPFVTVVQAIPKSERAELAVDLMVQAGADRIIPWESARTIAKWSGKEEKARAKWENAAR 134

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCGSENSLEKLHAIAH 186
           SAA+Q   L +P +  P      + +   + +      +V  +       S +      +
Sbjct: 135 SAAKQARRLRIPEVTSPARSVSQIASLLGDAKGLQRQVLVLHESATAGLKSRDF-----N 189

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
              V ++IGPEGG   EE   L  L     + LGP +LR+
Sbjct: 190 CDEVVLVIGPEGGVSPEEIAQLAELGG-EAVVLGPEVLRT 228


>gi|298346299|ref|YP_003718986.1| hypothetical protein HMPREF0573_11173 [Mobiluncus curtisii ATCC
           43063]
 gi|304389936|ref|ZP_07371893.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236360|gb|ADI67492.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC
           43063]
 gi|304326829|gb|EFL94070.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 300

 Score =  135 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 38/263 (14%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ 76
              +    G + H+ A V R++ G+ + + +G      +++       +R ++   + + 
Sbjct: 32  EGEEISIVGAEAHH-ATVKRLRLGEVVDVVDGLGWRAGAEVVAAQNSRLRLRLLADAVAD 90

Query: 77  T-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHYNMDRVR 128
                 +  I +  K  R    ++ +VEMG   + P     +              ++ R
Sbjct: 91  PVPPLRLTLIQALAKEKRDLQALESAVEMGAWRVIPWGATRSVSRWDTVTKRAKGREKWR 150

Query: 129 TYTISAAEQCDILTLPFIYP-----------------------PTTLEFLLKNWDHNCQI 165
              +SA +Q     L  +                           T+   ++        
Sbjct: 151 NLAVSAMKQSRQARLAEVSEYLESGGDIVPEPQGAETQSVKPAANTIFSEVEAMVQGGTA 210

Query: 166 VFADETCGSENSLEKLHAIAH----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           VF      +E+  + L  +A       ++A+++GPEGG  + E     +     P  LGP
Sbjct: 211 VFVLHELATEHLAQMLIPLARAGQTPEDIAVIVGPEGGITAPELTAFTAAG-ARPALLGP 269

Query: 222 RILRSDTAAVAAMALVQAICGDW 244
            +LR  +A  AA+A++Q+  G W
Sbjct: 270 TVLRCSSAGPAALAVIQSQLGSW 292


>gi|306818068|ref|ZP_07451799.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304649032|gb|EFM46326.1| RsmE family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 342

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 102/290 (35%), Gaps = 63/290 (21%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L   T+ + +G + H+ + V R++ G+ + L +G+     +++   G  +RF++    R 
Sbjct: 55  LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113

Query: 76  QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127
           +      +  I +  K  R    ++ + E+G   + P      ++R+          ++ 
Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173

Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161
           +   +SA +Q     L  +                 PP++               +    
Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233

Query: 162 NCQIVFADETCGSENSLEKLHAIAHIP---------------------------NVAILI 194
             ++    E+     S+         P                            +A+++
Sbjct: 234 GGRVFVLHESATERLSVLLRAISREAPHEPGGELSGAGNLGAGNLGAGNLGGTMEIAVVV 293

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG    E E   ++     + LG  +LR  TA   A+A++QA  G W
Sbjct: 294 GPEGGITEGELEGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 342


>gi|150020162|ref|YP_001305516.1| 16S ribosomal RNA methyltransferase RsmE [Thermosipho melanesiensis
           BI429]
 gi|149792683|gb|ABR30131.1| protein of unknown function DUF558 [Thermosipho melanesiensis
           BI429]
          Length = 226

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF--KVEYQSRSQTKQSDVQYIFSP 88
           +   V R+KEGD +   +GK GE+L KI  + K   F   +E +   + ++S++      
Sbjct: 23  HFKTV-RIKEGDIVKSTDGKGGEFLVKIEKIKKKKSFGTILESKYIEKDEKSNLVLFAPS 81

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYNMDRVRTYTISAAEQCDILTLPFIY 147
            K  RL ++I+KSVE+G+  I    T+Y+        +++     ++A+QC     P  +
Sbjct: 82  GKWERLRWLIEKSVELGVDKIYITKTKYSNRDYRDKEEKISLVIRNSAKQCIRYHFPE-F 140

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
              + + + K    N   +        EN  E +H     PN + ++GPEGG+  +E + 
Sbjct: 141 KFISFKEIEKYASINTYFL----DFEGENIPEIIH-----PNTSFIVGPEGGFSEDE-KK 190

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
             ++ F TP+ LG + LR +TAA   ++ + 
Sbjct: 191 FLNVNF-TPVVLGKKTLRFETAAFVFLSYLS 220


>gi|315657188|ref|ZP_07910072.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492291|gb|EFU81898.1| RsmE family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 300

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 99/262 (37%), Gaps = 38/262 (14%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQT 77
             +    G + H+ A V R++ G+ + + +G      +++       +R ++   + +  
Sbjct: 33  GEEISIVGAEAHH-ATVKRLRLGEVVDVVDGLGWRAGAEVVAAQNSRLRLRLLADAVADP 91

Query: 78  -KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY--TQNTHYNMDRVRT 129
                +  I +  K  R    ++ +VEMG   + P      ++R+          ++ R 
Sbjct: 92  VPPLRLTLIQALAKEKRDLQALESAVEMGAWRVIPWGATRSVSRWDTVAKRAKGREKWRN 151

Query: 130 YTISAAEQCDILTLPFIYP-----------------------PTTLEFLLKNWDHNCQIV 166
             +SA +Q     L  +                           T+   ++        V
Sbjct: 152 LAVSAMKQSRQARLAEVSEYLESGGDIVPEPQGAETQSVKPAANTIFSEVEAMVQGGTAV 211

Query: 167 FADETCGSENSLEKLHAIAH----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222
           F      +E+  + L  +A       ++A+++GPEGG  + E     +     P  LGP 
Sbjct: 212 FVLHEVATEHLAQMLIPLARAGQTPEDIAVIVGPEGGITAPELTAFTAAG-ARPALLGPT 270

Query: 223 ILRSDTAAVAAMALVQAICGDW 244
           +LR  +A  AA+A++Q+  G W
Sbjct: 271 VLRCSSAGPAALAVIQSQLGSW 292


>gi|312196048|ref|YP_004016109.1| hypothetical protein FraEuI1c_2200 [Frankia sp. EuI1c]
 gi|311227384|gb|ADP80239.1| protein of unknown function DUF558 [Frankia sp. EuI1c]
          Length = 251

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 80/226 (35%), Gaps = 11/226 (4%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69
           F   PL        +G +  + A V R++ G+ + + +G       +++ V +  +  +V
Sbjct: 7   FHLAPLPAVDVFTLAGPEGRHAATVRRLRVGERLDVTDGAGHALRCEVAAVRRDELDCRV 66

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRP------VITRYTQNTHYN 123
             ++ +      +  + +  K +R +  ++   E+G+  I P      V+    +    +
Sbjct: 67  LDRAHTPAPVPRLVVVQALAKGDRGELAVEMLTEVGVDEIVPWSAARSVVRWDGERGARS 126

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD-HNCQIVFADETCGSENSLEKLH 182
             R       AA+Q      P +        +          +V  +        L    
Sbjct: 127 RGRWVASAAEAAKQARRARWPLVAELAGTVAVRDRLAVAGLGLVLHESAAEPLAGLPAGR 186

Query: 183 A--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           A        + +++GPEGG   EE            + LGP +LR+
Sbjct: 187 AGDWPPAGEIVLVVGPEGGISDEELAGFGKAG-ARSVRLGPTVLRT 231


>gi|307700645|ref|ZP_07637673.1| RNA methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614175|gb|EFN93416.1| RNA methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 342

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 63/290 (21%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L   T+ + +G + H+ + V R++ G+ + L +G+     +++   G  +RF++    R 
Sbjct: 55  LEAGTETRLTGAEAHHAS-VKRLRAGEVVDLVDGRGWRAGAELVGSGTDLRFRLVEAPRF 113

Query: 76  QT-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTH--YNMDRV 127
           +      +  I +  K  R    ++ + E+G   + P      ++R+          ++ 
Sbjct: 114 EACPALRLTLIQALAKEKRDLQALEAACEIGALRVVPWGAARSVSRWDGRAKQVKGREKW 173

Query: 128 RTYTISAAEQCDILTLPFIY----------------PPTT----------LEFLLKNWDH 161
           +   +SA +Q     L  +                 PP++               +    
Sbjct: 174 QNLAVSALKQSRQSRLAEVGEYVESGAGGADSGTGVPPSSRRGAGDENSVFAETRRIIAA 233

Query: 162 NCQIVFADETCGSENSLEKLHAIAHIP---------------------------NVAILI 194
             ++    E+     S+         P                            +A+++
Sbjct: 234 GGRVFVLHESASERLSVLLRAISREAPHEPGGELSGAGNLGAGNLGAGNLGGTMEIAVVV 293

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           GPEGG    E     ++     + LG  +LR  TA   A+A++QA  G W
Sbjct: 294 GPEGGITEGELAGFRAMG-AEIVLLGSSVLRCSTAGPVALAIIQATLGSW 342


>gi|315654888|ref|ZP_07907793.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC
           51333]
 gi|315490849|gb|EFU80469.1| protein of hypothetical function DUF558 [Mobiluncus curtisii ATCC
           51333]
          Length = 300

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 99/263 (37%), Gaps = 38/263 (14%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQ 76
              +    G + H+ A V R++ G+ + + +G      +++       +R ++   + + 
Sbjct: 32  EGEEVSIVGAEAHH-ATVKRLRLGEVVDVVDGLGWRVGAEVVAAQNSRLRLRLLADAVAD 90

Query: 77  T-KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRY--TQNTHYNMDRVR 128
                 +  I +  K  R    ++ +VEMG   + P      ++R+          ++ R
Sbjct: 91  PVPPLRLTLIQALAKEKRDLQALESAVEMGAWRVIPWGATRSVSRWDTVSKRAKGREKWR 150

Query: 129 TYTISAAEQCDILTLPFIYP-----------------------PTTLEFLLKNWDHNCQI 165
              +SA +Q     L  +                           T+   ++        
Sbjct: 151 NLAVSAMKQSRQARLAEVSEYLESGGDIVPEPQGAETRSVKSAANTIFSEVEAMVQGGTA 210

Query: 166 VFADETCGSENSLEKLHAIAH----IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           VF      +E+  + L  +A       ++A+++GPEGG  + E     +     P  LGP
Sbjct: 211 VFVLHEVATEHLAQMLIPLARAGQTPEDIAVIVGPEGGITAPELTAFIAAG-ARPALLGP 269

Query: 222 RILRSDTAAVAAMALVQAICGDW 244
            +LR  +A  AA+A++Q+  G W
Sbjct: 270 TVLRCSSAGPAALAVIQSQLGSW 292


>gi|330837775|ref|YP_004412416.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
 gi|329749678|gb|AEC03034.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
          Length = 263

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 30/248 (12%)

Query: 9   RLF-VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
           R++ +      ++    S  +  YL  VLR  EG      +     WL  +  VG S   
Sbjct: 2   RIYKLPVSFSGESFFLLSPKESRYLVSVLRFPEGKTFSGRDASGTPWLLTLQKVGASYGL 61

Query: 68  KVEYQSRSQTKQ-------------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT 114
           +    +     +               +      +K  +L+ +I+++ EMG+  I PV +
Sbjct: 62  RCTPATEDDATENAADAMPLYTGFLPAIHLFPCLLKGKKLEGVIRQACEMGVRRITPVHS 121

Query: 115 RYT--------QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
            +         +     + R       A +Q     +  + P      +   W  +   +
Sbjct: 122 AHCVASFVDDEKRNAGKIQRFEAQVREAVQQSGSRIITEVTPAIPFSDIPTAWGSSGPGL 181

Query: 167 FADE------TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG 220
           F  +      + G   +L + H +A  P +AI+IGPEGG   EE   L +  F   + L 
Sbjct: 182 FFHQGQNDALSFGQRIALIRNHVLAGAP-LAIVIGPEGGLSPEECALLEASGF-HGVLLK 239

Query: 221 PRILRSDT 228
             ILR++T
Sbjct: 240 TNILRAET 247


>gi|24214688|ref|NP_712169.1| hypothetical protein LA_1988 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657777|ref|YP_001863.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|24195677|gb|AAN49187.1|AE011372_3 conserved hypothetical protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601017|gb|AAS70500.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 230

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 10/217 (4%)

Query: 24  ASGDQYHYLAHVLRM-KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDV 82
            + ++  +L   LR+  E  N+ + NG   EW+ +I        FK         + S V
Sbjct: 19  LNKEEISHL-KALRIFSEDKNLRVLNGIGTEWIYEIPGNSVQGIFKKTITHLKSERVSAV 77

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142
               +  K NRL++++QK  E+G+     +    +    +N++R +     A+ Q   + 
Sbjct: 78  --ATAIPKGNRLEWLLQKGTELGLTHFYFLNFEQSDRKDFNLNRAQKIVEEASIQSKRIF 135

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP I  P +L+  L +       ++  +  G      +        N   +IGPEGG+  
Sbjct: 136 LPEIVSPVSLKEFLISQKKQNLSIYRLDPQGEWKLKPEF-----FQNAIWIIGPEGGFRE 190

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +E   L     +  + +G  IL+ +TA V   +L + 
Sbjct: 191 KEILLLQERN-IPGIKVGDTILKIETAVVFTASLFRY 226


>gi|15639268|ref|NP_218717.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025510|ref|YP_001933282.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322550|gb|AAC65264.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018085|gb|ACD70703.1| hypothetical protein TPASS_0276 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059678|gb|ADD72413.1| RNA methyltransferase superfamily [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 294

 Score =  133 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 35/263 (13%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           +K+L +          + SG  +HY+  V R + GD   L      ++ + +S +    R
Sbjct: 16  MKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTR 75

Query: 67  FKVEYQSRSQT----KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-QNTH 121
             + + +         Q  +  +    +    D +++ + E+G   I P+    +     
Sbjct: 76  SLILHCTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTARIIPIRGERSLIRDE 135

Query: 122 YNMD--RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN------WDHNCQIVFADETCG 173
            +    R++     A +Q        +    +L   L        +    +I  +++  G
Sbjct: 136 KDTQHARLQRIVREARQQSGSAVNTRVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVG 195

Query: 174 S---------------------ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212
                                 E +            V + +G EGG+   E+ TLH   
Sbjct: 196 GSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAEGGFSDTEERTLHDAH 255

Query: 213 FVTPLSLGPRILRSDTAAVAAMA 235
           F  PL     +LR +TAA+ A+A
Sbjct: 256 FA-PLHFRTNVLRVETAALYALA 277


>gi|315282369|ref|ZP_07870795.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii
           FSL S4-120]
 gi|313613989|gb|EFR87707.1| ribosomal RNA small subunit methyltransferase E [Listeria marthii
           FSL S4-120]
          Length = 140

 Score =  133 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 113 ITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
           +    +     ++R++     AAEQ     +P ++   + + L+ +  H   ++ A E  
Sbjct: 1   MKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMFDHVHYDYVIAAYEES 60

Query: 173 GSENSLEKL----HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
             E     L      I    +V  + GPEGG   +E   L  +       LGPRILR++T
Sbjct: 61  AREGEDSALASLFQTIKPGQSVLCIFGPEGGISEKELVLLQEVN-AKLAGLGPRILRTET 119

Query: 229 AAVAAMALVQAICGDWY 245
           A +  ++       D Y
Sbjct: 120 APLYVLSAASFYF-DLY 135


>gi|26553614|ref|NP_757548.1| hypothetical protein MYPE1610 [Mycoplasma penetrans HF-2]
 gi|26453620|dbj|BAC43952.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 234

 Score =  133 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 98/235 (41%), Gaps = 13/235 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KS 64
           +++ F+        +     +   +    LR+   D I   +  +     KI  +   KS
Sbjct: 1   MRKFFIR---IKNNKVWFDDNDLKH-FKSLRINNEDIIDCIDQNNSLVKVKIKSLDPIKS 56

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
              +++    S  K  D+      IK    +  + K  E+ +  I PV   Y+Q   + N
Sbjct: 57  EIIEIKENKLSN-KPYDITCFLGVIKKQNFELAVVKLSELNIKKIIPVYFDYSQRNINLN 115

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL-KNWDHNCQIVFADETCGSENSLEKLH 182
             R+      + +QC+ +    I  P T   ++ K  D NC  +  +    SE    K+ 
Sbjct: 116 YQRLDILIKESQKQCNRIAKLEIDEPITFNDMVNKLNDFNCNFIAYEHQDLSE--WNKIK 173

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             +++ N++ ++GPEGG+  +E   L +      L L   IL+++TA++   +++
Sbjct: 174 NNSNLNNISYIVGPEGGFSGKEINELKNK--CIFLKLTNTILKTETASIYLASIL 226


>gi|203287810|ref|YP_002222825.1| uncharacterized protein conserved [Borrelia recurrentis A1]
 gi|201085030|gb|ACH94604.1| uncharacterized protein conserved [Borrelia recurrentis A1]
          Length = 242

 Score =  133 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 13/214 (6%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFS 87
           YHYL +V R++ GD + +  GK     S+I  +    IRF        + +  ++    S
Sbjct: 24  YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFEIDIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
            +K  +LD  +++ VE+G+ +I  V    +       N      R       A +Q    
Sbjct: 84  NLKGRKLDLSLRQVVEIGVNSINIVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGNA 143

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P I        +  +   N  + ++       + L     I+    + ILIGPEG + 
Sbjct: 144 QIPSINFYNDFFSIPYSSSVNYYVAYS-----KGDFLHLGENISVFGKIGILIGPEGCFS 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             E +    L F   +     ILR+DTA V A+A
Sbjct: 199 KLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231


>gi|270263052|ref|ZP_06191322.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13]
 gi|270042740|gb|EFA15834.1| hypothetical protein SOD_d00670 [Serratia odorifera 4Rx13]
          Length = 166

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 6   HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
            + R++   PL    +   S D  +++  VLRM  G  + LF+G +  + ++I  V K  
Sbjct: 2   RIPRIYHPQPLIDNAEIALSEDAANHVGRVLRMSAGQTLQLFDGSNRVFNAEIVRVDKKS 61

Query: 65  IRFKVEY-QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN 123
           ++ ++   Q   +    ++       +  ++++ IQKS+E+G+  I P+ +        +
Sbjct: 62  VQVQLGAGQLEDRESPLNLHLGQVISRGEKMEFTIQKSIELGVNVITPLFSERC-GVKLD 120

Query: 124 MDRVRT 129
            +R+  
Sbjct: 121 GERLAK 126


>gi|15827256|ref|NP_301519.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium leprae TN]
 gi|221229734|ref|YP_002503150.1| 16S ribosomal RNA methyltransferase RsmE [Mycobacterium leprae
           Br4923]
 gi|13092805|emb|CAC30134.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932841|emb|CAR70719.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 257

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 13/231 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFK 68
            +VD      T     GD+  +   V R++ G+ ++L +G  G     +   G+  +  +
Sbjct: 6   FYVDALPDTGTVAVVGGDEGFHAVTVRRIRPGEELVLGDGVGGLAHCLVERAGRDGLYAR 65

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI------RPVITRYTQNTHY 122
           V               + +  K  R +  I+ + E G  A       R V + Y      
Sbjct: 66  VLGHWTVAPGLPPATVVQALPKAERSELAIEMATEAGADAFVAWQSDRCVASWYGVRVDK 125

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENS 177
            + R R    +AA Q     +P +    T   LL+            +   +      + 
Sbjct: 126 GLRRWRAVARAAARQSRRAHIPSVDGVLTTAALLQRIRDEVAAGATVLALHESATDRLSD 185

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +    ++A   ++ +L+GPEGG   +E   L     V  + LGP +LRS T
Sbjct: 186 VFADISVAQANSLVLLVGPEGGIAPDEIAALTEAGAV-AVRLGPTVLRSST 235


>gi|260578252|ref|ZP_05846168.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603554|gb|EEW16815.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 270

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 93/247 (37%), Gaps = 37/247 (14%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71
           +  P+ +  + + +G +  + + V R++ G+ +++ +G         S++G     +V  
Sbjct: 10  IPEPVVVGDRFRLTGAEAKHAS-VKRLEVGEGLVITDGATRAVQG--SFLGD-ATVEVAD 65

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV-----ITRYTQNTHYNMDR 126
                T    V  + +  K++R +  +  +V+ G   I P      I ++         +
Sbjct: 66  ILELPTPNPRVTVVQAIPKSDRAELAVDLAVQAGADRIVPWAARRAIAKWDGKEAKAHAK 125

Query: 127 VRTYTISAAEQCDILTLPF----IYPPTTLEFLLKNWDHN---------------CQIVF 167
                 +AA+Q   L +P     +  P  L  +L   +                   +V 
Sbjct: 126 WDNAARAAAKQSRRLQIPEVTQLVRSPQELARVLGLGEAGTAASGVGGGSGTSTVRVLVL 185

Query: 168 ADETCGSENSL--------EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL 219
            +E      +         +   + A    +A+++GPEGG   EE      L   TP+ L
Sbjct: 186 HEEATEPLPAAVSAAVNGDDANGSEAAATEIALVVGPEGGISPEELAEFEQLG-ATPVRL 244

Query: 220 GPRILRS 226
           GP +LR+
Sbjct: 245 GPEVLRT 251


>gi|99034296|ref|ZP_01314342.1| hypothetical protein Wendoof_01000858 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 141

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 77/137 (56%), Gaps = 1/137 (0%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI-RF 67
           RL+V+  L        +  Q HY+ +V+R+K+ DN+ LFNGKDGEWL ++  + + +   
Sbjct: 5   RLYVEEALSQGVSLALNPQQSHYICNVMRLKKYDNLSLFNGKDGEWLGEVVNISRKLTEV 64

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV 127
             +  ++ Q  + ++    + +K+  L+ +++++ EMG+  I+ + T  T   + N+ R 
Sbjct: 65  TPKECTKQQQYEENLYLYCAMVKSAALNNIVRQATEMGVICIQFISTERTVVKNINLSRA 124

Query: 128 RTYTISAAEQCDILTLP 144
           +   I AAEQ   +++P
Sbjct: 125 KLQAIEAAEQSGRISIP 141


>gi|300788464|ref|YP_003768755.1| ribosomal RNA small subunit methyltransferase E [Amycolatopsis
           mediterranei U32]
 gi|299797978|gb|ADJ48353.1| ribosomal RNA small subunit methyltransferase E [Amycolatopsis
           mediterranei U32]
          Length = 250

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 15/229 (6%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKS--IR 66
           F+   +    +    G++  + A V R++ G+ ++L +G        +     G+   + 
Sbjct: 9   FLAASVPASGRAILDGEEARHAATVRRLRAGERLVLSDGAGAMARCVVEGVQAGREPLLT 68

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR 126
             VE     +     V    +  K +R +  ++ + E G  AI P     +     +  R
Sbjct: 69  LAVEEHWTEEPPGLRVLVAQALAKGDRGELAVELATEAGADAIVPWRAARSVAKWEDGGR 128

Query: 127 VRT-------YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
                        +AA+Q     +P +  P T    L        +    E+   E   +
Sbjct: 129 GEKALARWRATARAAAKQARRAHVPEVAEPVTTGE-LAGLVATMSLAIVLESDVPERLTD 187

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +    +V +++GPEGG   EE   L        + LG  +LR+ T
Sbjct: 188 L--PLPDAGDVLLVVGPEGGITDEELRLLRDAG-ARAVRLGTTVLRTST 233


>gi|86739973|ref|YP_480373.1| 16S ribosomal RNA methyltransferase RsmE [Frankia sp. CcI3]
 gi|86566835|gb|ABD10644.1| protein of unknown function DUF558 [Frankia sp. CcI3]
          Length = 230

 Score =  131 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 35  VLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFSPIKTNR 93
           V R++ G+ + + +G       ++    +  I   V  +  +      +  + +  K +R
Sbjct: 2   VRRLRPGEPVDVTDGLGRAVECEVVAARRDEIDCAVRRRVAAAAPSPRLVVVQALAKGDR 61

Query: 94  LDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDILTLPFIY 147
            +  ++   E+G+  I P     +             +R       A++Q   L  P + 
Sbjct: 62  GERAVEMLTEVGVDEIVPWSAARSVARWEGVRGVRARERWVRAAEEASKQSHRLHWPVVG 121

Query: 148 PPTTLEFLLKNWDHNCQIVFADETC-----GSENSLEKLHAIAHIPNVA---ILIGPEGG 199
               L+ +++        V   E       G   S+E    +A   + A   +++GPEGG
Sbjct: 122 ELAGLKEVVERVRAAALAVLLHEEATIPLVGLARSVEVSERVAPAASAAELVLVVGPEGG 181

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               E  TL     +    LG  +LR+ T
Sbjct: 182 VSELELATLGEAGAIVS-RLGSTVLRTST 209


>gi|163784445|ref|ZP_02179323.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880282|gb|EDP73908.1| hypothetical protein HG1285_04853 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 202

 Score =  131 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 12/194 (6%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQ 79
                D+ H+   V R+K    I + +     +L+K+  V K       +E  + ++T  
Sbjct: 15  LILDKDEAHHAF-VKRIKPDYFIRVNDLNGHIYLAKVLEVSKKHLKAKILEELTTNETHL 73

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----NMDRVRTYTISAA 135
               Y+ +P + +++D +I    E+G+    PVI + +          +++ +  T+++ 
Sbjct: 74  KITLYLCAPNQLSKVDELIPFITELGVYRFIPVICKNSAVKEKDILKKIEKWKKITLNSI 133

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
           +QC+ L    I  P  L+ +    D    ++F +     +N   K +    +  V ++IG
Sbjct: 134 KQCERLYPVIIEKPIKLKDI--PSDAELNVLFYERE---KNETLKNYCQLSVKKVNVVIG 188

Query: 196 PEGGYHSEEKETLH 209
            EGG+  +E   L 
Sbjct: 189 NEGGFTQDEVSILA 202


>gi|256396163|ref|YP_003117727.1| 16S ribosomal RNA methyltransferase RsmE [Catenulispora acidiphila
           DSM 44928]
 gi|256362389|gb|ACU75886.1| protein of unknown function DUF558 [Catenulispora acidiphila DSM
           44928]
          Length = 247

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 11/214 (5%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77
             + +  G +  + A V R+  G+ + L  G+       ++   K  +   V    R+  
Sbjct: 18  GARVRLDGAEGRHAALVRRLTAGERVDLAGGQGVVAECVVAVAHKDWLELDVRDVVRTPA 77

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYT 131
            +  V  + +  K +R +  ++   E+G+ A+ P     +      +     +++ R   
Sbjct: 78  PEPRVTVVQALPKGDRGETAVETMTEIGVDAVVPWAASRSIVQWKGERGEKALNKWRATA 137

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
             AA+Q      P +    +   + +      Q +   E    E  L  L  +    +V 
Sbjct: 138 REAAKQSRRAWWPTVRSLHSTAEVAELLAGADQALVLHEDA--ETPLAGLDVVRQG-SVV 194

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
           ++IGPEG    +E              +GP +LR
Sbjct: 195 LVIGPEGSISPQELAA-FEAAGARAYKMGPTVLR 227


>gi|269792239|ref|YP_003317143.1| hypothetical protein Taci_0625 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099874|gb|ACZ18861.1| protein of unknown function DUF558 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 239

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 37/231 (16%)

Query: 9   RLFVDFPLCIKTQGKASGDQYHYLAHVLR---------MKEGDNILLFNGKDGEWLSKIS 59
           RLF         + +    Q  +L  VLR         ++EG  ++L          ++S
Sbjct: 11  RLF-------PGRYRLDPQQARHLVKVLRCYTGALVEGLEEGRRVIL----------RLS 53

Query: 60  YVGKSIRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT- 117
                +  K V  Q       S V  +   +K ++ D +++ S E+G+  I PVI   + 
Sbjct: 54  VSNGVVEAKEVVDQEDLGGYASRVVLLVGLLKADQWDQVLRFSCELGVDQIVPVICERSV 113

Query: 118 ---QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
               + H  + R R   + +  QC  L  P I    +L  L  +     ++         
Sbjct: 114 PRPDDWHRKVQRYRRILLESTRQCGALRPPTIGDLVSLRELDPSGLPELRL-----GAFL 168

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            +    +  +    +VA+ +GPEG +   E E L  + F  P+SLGPR+LR
Sbjct: 169 ADGAVPIGEVVPCGDVALAVGPEGDWAPWEAEALIGMGF-RPVSLGPRVLR 218


>gi|291279753|ref|YP_003496588.1| hypothetical protein DEFDS_1371 [Deferribacter desulfuricans SSM1]
 gi|290754455|dbj|BAI80832.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 236

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 25/249 (10%)

Query: 7   LKRL---FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVG 62
           + RL   +++   C     K     Y+Y+ +VLR+K G+ I+++  K  G +  KI  + 
Sbjct: 1   MHRLSSLYLEMDRC-DDLIKLGDKGYNYVRNVLRLKVGEQIVVYTKKSKGMY--KIKNIN 57

Query: 63  KS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT- 120
           K  I  + E +   +  + +   I S +K   LD++I+K  E+G   +  V T  +    
Sbjct: 58  KKSIEIERENEILYKKPEYEFVVIQSAMKREYLDFVIEKYGELGATKVIIVKTDNSVVKI 117

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
            +  ++R++   I+ A Q D   LP I    +++ L  N +   +I F +     EN   
Sbjct: 118 ENKTLERLKKLMINGAMQADYDYLPEIEYHDSIKNL--NVNTKDKICFYE----KENKKV 171

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP--FVTPLSLGPRILRSDTAAVAAMALV 237
            L  I+   +V+I IGPEGG++ ++   L+     F++P++ G  IL+++TA V    ++
Sbjct: 172 FLDRIS--KSVSIFIGPEGGFNDDDISILNEKGFRFLSPIN-G--ILKAETAGVLFAGMI 226

Query: 238 QAI--CGDW 244
           +++  CG +
Sbjct: 227 KSLIDCGRY 235


>gi|257457364|ref|ZP_05622535.1| RNA methyltransferase family protein [Treponema vincentii ATCC
           35580]
 gi|257445286|gb|EEV20358.1| RNA methyltransferase family protein [Treponema vincentii ATCC
           35580]
          Length = 257

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 14/235 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG---K 63
           +K+  ++           SG  + YL  V RM+EGD +     + G     I  +    K
Sbjct: 1   MKQFIIEREPDANGMLSLSGKDFVYLIKVRRMREGDVLHALLPQSGAAEMVIDLINTVKK 60

Query: 64  SIRFKVEYQSRSQT---KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
            +R + +      +     +++  +   +K ++ D +I+++ E G+ A+ PVI  ++   
Sbjct: 61  ELRLRRQTAPLGASRTAPAAELILLQWVLKGSKTDTIIRQATEAGICAVLPVIGEFSVAK 120

Query: 121 HYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGS 174
             N   ++R R     A +Q        +  P  L  +   LK        VFA  +  S
Sbjct: 121 KQNPAQLERFRRIIKEARQQSGSPVDTAVTEPAPLAAVLNTLKALIPGAGTVFAMCSENS 180

Query: 175 ENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           E S+     +A  P+ + + IG EGG    E   L    F T +     +LR++T
Sbjct: 181 EASIGFHQLLAAKPSCIVLAIGAEGGISPAEAAVLRGAAFQT-VHFKTNVLRAET 234


>gi|167740222|ref|ZP_02412996.1| hypothetical protein Bpse14_19318 [Burkholderia pseudomallei 14]
          Length = 148

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY------ 116
                   ++         V         +++D++I+K+VE+G+ A+ P+ T        
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPLSTARGVVRLS 135

Query: 117 TQNTHYNMDRVR 128
            +     +   R
Sbjct: 136 GERADKRVSHWR 147


>gi|301165446|emb|CBW25017.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 230

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 96/235 (40%), Gaps = 12/235 (5%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M+    + R F++  L    + + SGD   +L  V+R+K+ + ILL NGK  +  ++ + 
Sbjct: 1   MRAVY-IDREFLENEL--GQEIQLSGDSARHLIKVIRIKKNETILLLNGKGQKCEARSTR 57

Query: 61  VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
           + +           + +    +       K +  + +++ + E+G+  I      Y+Q  
Sbjct: 58  IDRREIDLEILSINNISDDRKLSLFLGLPKKDAFESIVKMASEIGIKNIYLYRAEYSQQD 117

Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
               DR+     SA  Q +                 K++ +    V    T  S ++   
Sbjct: 118 IEFTDRLLKLEESAIIQSNNPFRINFLKVDNFSDAFKDYSN----VVHFSTFSSTDA--- 170

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             ++       ++IGPE G+  +E++ +     V+ + L   I+R+ TA +A  +
Sbjct: 171 -DSLKFDSETLLVIGPEAGFSQDEEDQIKGFENVSTVKLDTYIMRAPTA-LAVAS 223


>gi|224437230|ref|ZP_03658207.1| 16S rRNA m3U1498 methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313143692|ref|ZP_07805885.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128723|gb|EFR46340.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 229

 Score =  128 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 98/235 (41%), Gaps = 15/235 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVGKSI 65
           ++  F+  P     Q + S D + Y+    R++    I + N +D   +   I+ + K  
Sbjct: 1   MQ--FLYQPNAGDFQVEISNDDFTYIIKARRLQLDSVIKVRNLQDKKLYTYTIAEIKKKS 58

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HY 122
               K+  Q   ++  S +  +++ I    ++  +    E+G+  I      ++Q     
Sbjct: 59  ALLTKISEQDSPKSHFSPLHLLWAIIDPKVIEKTLPFLNELGISRISFFYAEFSQRQFSL 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N+ R++   IS+ +QC  + L  +      + + + +       F  E     N     +
Sbjct: 119 NLQRMQKILISSCQQCGRIDLMELEVLKDFDCVCERYTPFYAFDFGGEDIRQHNP---FN 175

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMAL 236
             A   +V +++G EGG+   E++      F   ++L    ILRS++A+V   +L
Sbjct: 176 EGAENGSVRVMVGAEGGFSQRERQR-----FAKIITLNDTLILRSESASVFLASL 225


>gi|332686843|ref|YP_004456617.1| ribosomal RNA small subunit methyltransferase E [Melissococcus
           plutonius ATCC 35311]
 gi|332370852|dbj|BAK21808.1| ribosomal RNA small subunit methyltransferase E [Melissococcus
           plutonius ATCC 35311]
          Length = 141

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
           +       R+    + AAEQ     LP +    T + L+  + +  Q++ A E    +  
Sbjct: 4   KKRVAKTKRLNKIALEAAEQSHRQWLPSVKLLKTGKELVALFQNYDQVIVAYEESAKQGD 63

Query: 178 LEKL------HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
              L              +  + GPEGG+  +E          T   LGPRILR++TA +
Sbjct: 64  THSLVKSFTSLDKNKKNKILAIFGPEGGFSPKEITIFKQAG-ATLCGLGPRILRAETAPL 122

Query: 232 AAMALVQA 239
             ++ +  
Sbjct: 123 YFLSALSY 130


>gi|203284273|ref|YP_002222013.1| uncharacterized protein conserved [Borrelia duttonii Ly]
 gi|201083716|gb|ACH93307.1| uncharacterized protein conserved [Borrelia duttonii Ly]
          Length = 242

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 13/214 (6%)

Query: 29  YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTKQSDVQYIFS 87
           YHYL +V R++ GD + +  GK     S+I  +    IRF        + +   +    S
Sbjct: 24  YHYLVNVRRLRVGDRLNILLGKREIRFSEILSIENHRIRFATLRVEELKMRDFAIDIFIS 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQCDIL 141
            +K  +LD  +++ VE+G+ +I  V    +       N      R       A +Q    
Sbjct: 84  NLKGRKLDLSLRQVVEIGVNSINIVNADNSIAKLDMDNLEPKKLRFLKIIDEALKQSGNA 143

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P I        +  +   N  + ++       + L     I+    + ILIGPEG + 
Sbjct: 144 QIPSINFYNDFFSIPYSSSVNYYVAYS-----KGDFLHLGENISVFGKIGILIGPEGCFL 198

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
             E +    L F   +     ILR+DTA V A+A
Sbjct: 199 KLEIDFFKKLNF-KFVRFNTPILRADTAIVYALA 231


>gi|227504549|ref|ZP_03934598.1| 16S rRNA m3U1498 methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198869|gb|EEI78917.1| 16S rRNA m3U1498 methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 240

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 21/227 (9%)

Query: 11  FVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65
           F+   L    +       G +  +   V R+  G+ + L +G     L+ I  +     +
Sbjct: 6   FIHPDLSQARVGEPVGLDGAEGRHAVTVKRLSVGERLKLIDGTGTAALATIQSISGKDHL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT----- 120
              V+  + +      V  + +  K+ R +  +  + + G   I                
Sbjct: 66  AALVDAVTFAPEPNPRVVVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDAKK 125

Query: 121 -HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
               + +     I+AA+Q     +P +  P T   + +        V  +E   S     
Sbjct: 126 APKALAKWEAAAIAAAKQSRRDRIPAVSGPLTTPQVAQLIAGQTAYVLHEEATAS----- 180

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
            +  +     V +L+GPEGG  +EE E L        + LGP +LR+
Sbjct: 181 -IKDVPLEGTVYLLVGPEGGIGAEELERL----GAQSIKLGPEVLRT 222


>gi|119953152|ref|YP_945361.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae
           91E135]
 gi|119861923|gb|AAX17691.1| hypothetical cytosolic protein [Borrelia turicatae 91E135]
          Length = 242

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 16/238 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVGKS 64
           +K++ +D                YHYL  V R+K GD + +  G   E   ++IS +  +
Sbjct: 1   MKQIVLDDTCLFDNDIIIDDVKIYHYLVDVRRVKVGDTLNVLLG-GREVRFAEISSIDNN 59

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            I+         + +  +V    S +K  +LD  +++ VE+G+  I  V    +      
Sbjct: 60  LIKLSTLKVEMLKKRDFEVSIFISSLKGRKLDLSLRQVVEIGVDHINIVNADNSVARIDM 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
            +  +   R       A +Q     +P +        +  +   N               
Sbjct: 120 DDLEFKSTRFLKLINEALKQSGNTQVPSLNFYKNFFSISYSPSVN-----YYVAHKEGVL 174

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           L     I+    + ILIGPEG +   E +    L F   +     ILR+DTA V ++A
Sbjct: 175 LGCGDDISVFGKIGILIGPEGCFSKSEIDFFKKLNF-KFVRFNTPILRADTAVVYSLA 231


>gi|312879754|ref|ZP_07739554.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM
           12260]
 gi|310783045|gb|EFQ23443.1| protein of unknown function DUF558 [Aminomonas paucivorans DSM
           12260]
          Length = 243

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 13/216 (6%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           L  + +      Q H+L  VLR  EG  +   +G+    L      G+    +VE    S
Sbjct: 13  LLGEGRYLLDEAQAHHLTRVLRRYEGALLEGLSGEGRVLLRLRLGAGRVEAEEVERVPES 72

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRT 129
                 V  +   +K ++ + +++ + E G+  IR +    +            + R R 
Sbjct: 73  PDLLRVVLVVA-LLKADQFEPLLRMAAEFGVAEIRLLACERSVPRLESCREEGKLSRWRR 131

Query: 130 YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               +  Q   L  P ++PP  +  L         +  +            L     +  
Sbjct: 132 ILDESTRQSGSLRPPTLHPPVLVREL-----EEATLPPSRFGAFLAPGTVPLGRCLPVEA 186

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
            A+ +GPEG +  +E ETL +  FV P+ LGPRILR
Sbjct: 187 AAVAVGPEGDWSDQEVETLRAKGFV-PVGLGPRILR 221


>gi|251772544|gb|EES53110.1| conserved protein of unknown function [Leptospirillum
           ferrodiazotrophum]
          Length = 280

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 17/226 (7%)

Query: 29  YHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
             +L   LR   G+     +    +  +L ++           E    + + +       
Sbjct: 45  SRHLFRSLRAGVGERFCFVDPDRPERRFLGRVMKDAPPEISLEELAMETPSPRRTFDLAV 104

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDI 140
           + +K    + +I+ +  +G+  + P++   +Q            +R       A++    
Sbjct: 105 ALLKGEGWEDLIEPAAILGVRRLVPLLADRSQLRWSSDVLAKKRERFTAKVREASQLAGR 164

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
                I  P +L  LL        ++F D     E +   L  +   P VA  IGPEGG+
Sbjct: 165 ADRMEISEPVSLGELLLKLPSEGSLLFCDTAGHVEPAGTVLGRLGSAPAVA-AIGPEGGW 223

Query: 201 HSEEKETLHSLPF----VTPLSLGPRIL--RSDTAAVAAMALVQAI 240
              E+E +         +  +SLGP IL  R   A V   +L+   
Sbjct: 224 SERERELVEEFGHKGGRLHRISLGPLILPGRL--APVVVASLLSQE 267


>gi|313683427|ref|YP_004061165.1| hypothetical protein Sulku_2305 [Sulfuricurvum kujiense DSM 16994]
 gi|313156287|gb|ADR34965.1| protein of unknown function DUF558 [Sulfuricurvum kujiense DSM
           16994]
          Length = 222

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG---EWLSKISYV-GKSIRFKVEYQSRS 75
            +   SGD Y YL  V R K GD ++ F  ++    E+  ++    G+   F ++    +
Sbjct: 12  DELSVSGDDYKYLIKVRRHKAGD-LIAFRSRERLSEEYRYRLERTDGRCAYFSLQSHHHA 70

Query: 76  QTK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTIS 133
            ++    +   +  +    ++  +    E+G+  I  +  R +Q N   + +R +    S
Sbjct: 71  PSESNHRLHIGWCLVDPKTIEKTLPMLTELGVSKITFIHCRRSQQNFRLDFERYKRIMES 130

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
           +  QC   +L  +     +   LK  +    + F  E  GS+ S+E            ++
Sbjct: 131 SIMQCGRTSLIELSESPNMSTFLKEHNDAVVLDFGGEVLGSDESIE-----------TVV 179

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSL--GPRILRSDTAAVAAMALV 237
           IG EGG+   E++   +      + L   P ILRS+TAAVA  + +
Sbjct: 180 IGCEGGFDESERKVFSNH----RIRLFPSPMILRSETAAVAIASRL 221


>gi|149918557|ref|ZP_01907046.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1]
 gi|149820633|gb|EDM80045.1| hypothetical protein PPSIR1_20499 [Plesiocystis pacifica SIR-1]
          Length = 241

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 14/238 (5%)

Query: 9   RLFVDFPLCIKTQ--GKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-- 63
           R+F+      + Q      GD+ HYLA V R + GD++ +  G     W +++  + +  
Sbjct: 4   RVFLPPSRTEEAQAEITLDGDESHYLAKVRRARVGDSVEVLGGAAGQAWSARVVALERRA 63

Query: 64  -SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             +                +  +  P     LD  +  + E G   +  V    +Q    
Sbjct: 64  ARVLLLAPLPPPQPPPPLRLVLLGMPDAPAVLDS-LSAASEAGATRLALVRCARSQGRGP 122

Query: 123 NMDRVRTYTISAAEQCDI---LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           +  RV     +A  QC     L +  +  P TLE  L++       V      G   S  
Sbjct: 123 SPARVARVLRAAQRQCGRRLALVVEGLEQPWTLERALEHHAEWPGHVAWARGRG-RPSAA 181

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            L A A      +L+GPEGG    E        F   LSLGP +LR+ TA VA +A +
Sbjct: 182 DLDAPAPGRR--LLVGPEGGLTDGEVTLAMDAGF-QMLSLGPWVLRTPTAVVAGLARL 236


>gi|160901594|ref|YP_001567175.1| hypothetical protein Pmob_0103 [Petrotoga mobilis SJ95]
 gi|160359238|gb|ABX30852.1| protein of unknown function DUF558 [Petrotoga mobilis SJ95]
          Length = 232

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 88/208 (42%), Gaps = 9/208 (4%)

Query: 40  EGDNILLFNGKDGEWLSKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYM 97
           EG+ I +  G    + + I  +GK       ++ +   +  +  V   F   K +R+  +
Sbjct: 31  EGETIKVITGDGLLFTATIVKIGKKETVLEIIDKEKPQEDYKPYVSVYFGMSKWDRMHLL 90

Query: 98  IQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157
           ++K +E+   +        +   + N+++ +   I  ++Q     +P I      E + K
Sbjct: 91  LEKMIELRANSFYLYRGEKSDINYTNLNKFQRTIIETSKQTVFAHIPQINFVQ-FEEIPK 149

Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL 217
                   +  D    ++N  + L  +     + +++GPE G+   EK+   +  F T +
Sbjct: 150 K-----DTIVLDLDGTNDNLGKVLKELKGAQKINLVVGPEYGFSKREKDFFSTNEFKT-V 203

Query: 218 SLGPRILRSDTAAVAAMALVQAICGDWY 245
           +LG  I R +T+A+ AM+++       +
Sbjct: 204 NLGKSIFRFETSAIYAMSIINYEYNRLF 231


>gi|268678804|ref|YP_003303235.1| hypothetical protein Sdel_0162 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616835|gb|ACZ11200.1| protein of unknown function DUF558 [Sulfurospirillum deleyianum DSM
           6946]
          Length = 222

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 21/238 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65
           ++  FV  P   +   +     Y +L  V R+ +   +   N      +  +I  VGK  
Sbjct: 1   MQ--FVYHPEAGEALLRVDVRAYEHLFKVRRVAKDALLYWRNLNDGVLYGYRIQEVGKKE 58

Query: 66  RF--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
               +V  +         +   +  I    ++  +    E+G+  +  +   ++Q +H  
Sbjct: 59  ALLERVSGEILEIDASKKMHIGWCVIDPKMIEKTLPMLNELGVSKLSFIYAEFSQKSHKL 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           + DR++   I++ +QC       +   ++L+  L+ +  +  + F+ ET      +    
Sbjct: 119 DFDRMQRIVINSCQQCGRSRWMEMELFSSLQAYLEAYPTSTILDFSQETMKESAEISS-- 176

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG-PRILRSDTAAVAAMALVQA 239
                    ILIGPEGG+  +E+    +    T + L    ILRS+TA VA  + + A
Sbjct: 177 ---------ILIGPEGGFSEKERNMFSNH---TIVGLTCKTILRSETAVVAVASKILA 222


>gi|51245558|ref|YP_065442.1| hypothetical protein DP1706 [Desulfotalea psychrophila LSv54]
 gi|50876595|emb|CAG36435.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 255

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 103/248 (41%), Gaps = 18/248 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----I 65
           LF +  +      + +  +  ++  VLR + GD + +     G  ++KI  +       +
Sbjct: 5   LFEEKEISSTYHIQITDHRAKHIVKVLRSQVGDRVRVGVIDGGRGMAKIVAIKPKFPFSV 64

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM- 124
              ++ ++    ++  +  + +  +   L  ++ +   +G+G I  + ++  + + +   
Sbjct: 65  DLDIQLETTLPEEKPVIDLVLALPRPIMLRRILSQVTSLGVGRIFLIDSQRVEKSFWQAS 124

Query: 125 ----DRVRTYTISAAEQCDILTLPFIYPPTTL-----EFLLKNWDHNCQIVFADET---C 172
               ++ R + +   EQ     LP +           E L+K+ D    ++ AD      
Sbjct: 125 LLQNEQYREHLLIGLEQAVATRLPEVSIYPKFKGFMDELLVKDLDDYSALIVADPAGTNT 184

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            SE   +   ++     V + +GPEGG+   E +      F +  ++G RIL+ DTA +A
Sbjct: 185 FSEALRQAGGSLRQGGRVLLCVGPEGGWVPAEVDQFSGCGF-SICTIGERILKVDTAVIA 243

Query: 233 AMALVQAI 240
             + + A+
Sbjct: 244 LHSRIMAL 251


>gi|187918227|ref|YP_001883790.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia hermsii DAH]
 gi|119861075|gb|AAX16870.1| hypothetical cytosolic protein [Borrelia hermsii DAH]
          Length = 242

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 90/237 (37%), Gaps = 16/237 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVGKS 64
           +K++ +D                YHYL  V R+K GD + +   +  E   ++I  +  +
Sbjct: 1   MKQIVLDDSCLFDNDIIIDDVKIYHYLVDVRRVKLGDTLNVL-LRGREIRFAEIIGINNN 59

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
            IR       + +T+  ++    S +K  +LD  +++ VE+G+  I  V    +      
Sbjct: 60  LIRLSTLKIEKLKTRDFEISMFISNLKGRKLDLSLRQIVEIGVDQINIVNADNSVARIEM 119

Query: 118 QNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
            +  +   R       A +Q     +P I        +  +       V           
Sbjct: 120 DDLKFKSSRFAKLIDEALKQSGNTQVPSINFYRNFFSIPYSPS-----VSYYVAHKDGVL 174

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           L   + I+    + ILIGPEG +   E +    L F   +     ILR+DTA V ++
Sbjct: 175 LSCGNDISASGKIGILIGPEGCFSKSEIDFFKKLNF-QFVRFNTPILRADTAIVYSL 230


>gi|237753184|ref|ZP_04583664.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229375451|gb|EEO25542.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 219

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 25/235 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKS- 64
           ++  F        T     G+ Y++L    R ++ D+I L N  D   ++  I+ +GK  
Sbjct: 1   MQ--FTYHKYAGNTTITLEGEIYNHLFRSRRTRKLDSITLCNLSDTNVYIYTIAEIGKKS 58

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM 124
              +++     ++K      I++ I    ++  +    E+ +  I      ++Q  H+ +
Sbjct: 59  ATLQLKTTQNMESKTPKGHLIWAMIDPKNIEKTLPFLNELNLAHITFFYADFSQK-HFKL 117

Query: 125 D--RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           D  R+     ++ EQC  LT   +     L  +L+ +     + F         + + L 
Sbjct: 118 DNLRLDRILENSCEQCGRLTRLKLELLNNLTEVLQKYPKIAVMDF---------NAKPLE 168

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP--RILRSDTAAVAAMA 235
           +   IP    LIG EGG+   E++ L +    +     P   ILRS+TAAV A +
Sbjct: 169 SSLEIP---FLIGTEGGFSPNERKLLSTQTTFSA----PNCNILRSETAAVYATS 216


>gi|255086017|ref|XP_002508975.1| predicted protein [Micromonas sp. RCC299]
 gi|226524253|gb|ACO70233.1| predicted protein [Micromonas sp. RCC299]
          Length = 207

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVIT-RYTQNTHYNMDRVRTYTISAAE 136
            + DV      +K  R D++++K  E+G  ++ P++T R       +  R      +A +
Sbjct: 27  PKWDVAVACGSLKGGRADWLVEKCSELGASSLVPLLTERSGSVGGSSEGRWERVAAAAMK 86

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV------ 190
           Q        ++P  T   L +        +           +  +        V      
Sbjct: 87  QSLRNHRLVVHPALTTTQLCEMVRRAPVALLCAAGAPPLREVMSMAESRTGDGVEAGYSE 146

Query: 191 ---AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
               +++GPEG +  EE ETL +     P+ LGP  LR +TAAVA ++ V 
Sbjct: 147 GGGVLIVGPEGDFTPEEVETLVAAG-ARPVGLGPLRLRVETAAVAIISCVS 196


>gi|302830234|ref|XP_002946683.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f.
           nagariensis]
 gi|300267727|gb|EFJ51909.1| hypothetical protein VOLCADRAFT_56392 [Volvox carteri f.
           nagariensis]
          Length = 187

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------------HYNMDRVRTYTISAAE 136
           +K  R +++++K  E+G   + P++T  +Q                +  R+    I+A +
Sbjct: 11  LKGGRAEWLVEKLTELGAFMMIPLVTERSQVGMTGRGCTAFFPNRISPGRLERVAIAATK 70

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN----VAI 192
           Q     +  + PPT L  +L   D      F          L      A   +      +
Sbjct: 71  QSLRPHVLHLAPPTALADVL--PDDGGGESFCLIAVAGAPPLATRGCDAAGESEGPLRVL 128

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            IGPEG +   E   L       P+ LG   LR++TAA+  +A 
Sbjct: 129 FIGPEGDFTPAELAALVQAG-ARPVGLGTNRLRTETAAIGLLAA 171


>gi|262195082|ref|YP_003266291.1| hypothetical protein Hoch_1850 [Haliangium ochraceum DSM 14365]
 gi|262078429|gb|ACY14398.1| protein of unknown function DUF558 [Haliangium ochraceum DSM 14365]
          Length = 248

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           LF         +   S  +  ++  VLR   GD + +   +    + +I  +G      V
Sbjct: 5   LFEAHEFGEGDRLVLSDRRAQHVQQVLRASLGDRVRVGMVRGPTGVGEIVDIGDERVEMV 64

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNM 124
              +    ++  V  I +  +   L  ++Q + E+G+G I  V       +     H ++
Sbjct: 65  VSFTEPAPERPRVDLILAVPRPKALSRVLQTASELGVGHIDLVNAWRVDKSYFDSHHLDL 124

Query: 125 DRVRTYTISAAEQCDILTLPFIY----PPTTLEFL----LKNWDHNCQIVFADETCGSEN 176
             +  +     EQ     +P I         L+ +    L   +    ++          
Sbjct: 125 GSLAHHVHLGCEQSGNTWVPEISVHRLLMPFLDEVMPQRLAGAEATSTLIAHPRAAE--- 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            +E +        V + IGPEGG+   E  +     FV P++  PR+LR +T
Sbjct: 182 PIENIVPPGPAQRVLLAIGPEGGWIERELSSFTGRGFV-PVTCTPRVLRVET 232


>gi|227497713|ref|ZP_03927917.1| protein of hypothetical function DUF558 [Actinomyces urogenitalis
           DSM 15434]
 gi|226832848|gb|EEH65231.1| protein of hypothetical function DUF558 [Actinomyces urogenitalis
           DSM 15434]
          Length = 193

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 17/183 (9%)

Query: 32  LAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSIRFKVEYQSRSQTKQSDVQYIFSPI 89
              V R++ G+ + L +G     + +++       +  +V  +         +  I +  
Sbjct: 1   AVTVRRLRAGERVDLADGAGLRLVCEVTAAEGKDRLAVRVLERIEEPAPSHALVLIQALA 60

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISAAEQCDILTL 143
           K  R +  ++ + E+G   + P     +             +R +     AA+Q     +
Sbjct: 61  KGGRDEQAVETATEVGADVVIPWQAGRSVAQWKGPKVAKGRERWQATASEAAKQARRARV 120

Query: 144 PFIYPPTTLEFLLK-----NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
           P +  P T   L              +V  +E       +    ++A    +A+++GPEG
Sbjct: 121 PQVAEPMTTAQLAAWVRETTQAGGTVLVLHEEATAPIGGV----SLAGSGAIAVVVGPEG 176

Query: 199 GYH 201
           G  
Sbjct: 177 GIS 179


>gi|319957587|ref|YP_004168850.1| hypothetical protein Nitsa_1856 [Nitratifractor salsuginis DSM
           16511]
 gi|319419991|gb|ADV47101.1| protein of unknown function DUF558 [Nitratifractor salsuginis DSM
           16511]
          Length = 225

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD---GEWLSKISYVGK 63
           ++  F+  P    +Q    G+ Y YL  V R++  D + L N +D     + ++     +
Sbjct: 1   MQ--FLYHPEAGASQLLLEGESYRYLFKVRRLRSEDPLHLRNMRDDCLYTYRTETLDRRR 58

Query: 64  SIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HY 122
           +    V  +         +   +  I    ++  +    EMG+  I  V    +Q     
Sbjct: 59  ARIALVSCRDLKIVLNRKLHLGWCQIDPRNVEKTLPALNEMGVFGITFVRCERSQRQFEP 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           + +R+    I++++QC    L  +    +LE  L+       + F+D          +L 
Sbjct: 119 DFERLERILINSSQQCGRSELMRLETAESLEAFLERHPEAMLLDFSDR---------RLP 169

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMALVQAIC 241
                   +I++G EGG+  EE+             L  P ILRS+TA     A  + + 
Sbjct: 170 CGGDWTERSIVVGCEGGFTPEERALFSEE---RIFGLETPTILRSETA--VCAAAARLLL 224

Query: 242 G 242
           G
Sbjct: 225 G 225


>gi|195952461|ref|YP_002120751.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932073|gb|ACG56773.1| protein of unknown function DUF558 [Hydrogenobaculum sp. Y04AAS1]
          Length = 219

 Score =  120 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 24/223 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F           +   +   +   VLR+++ + + L   +D  + +K  + G++  
Sbjct: 1   MHRFF---AFRKNGTIEFFEEDKKH-FKVLRIEKNELLELVI-EDKIYEAK--FTGQNFE 53

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT----QNTHY 122
             +E +++    +        PIK   L+ +I  +V+ G+  I PV  + +         
Sbjct: 54  L-LEEKTKPPDVKIYANVCI-PIKLQTLETIIDYAVQGGVFEITPVFCKRSFQDSSKLLE 111

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
              R++     A +Q     LP +  P +L+ +         IVF        + L+   
Sbjct: 112 KYQRLQKILKEAIKQSRPSFLPKLNHPISLQDITLQ---GYGIVFDSFEKPKNDLLKD-- 166

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
                    ++ GPEGG   EE E L +L F T  SLG  ILR
Sbjct: 167 -----NKYTLVFGPEGGLSKEEVEFLKALGFNTH-SLGDNILR 203


>gi|167817439|ref|ZP_02449119.1| hypothetical protein Bpse9_20039 [Burkholderia pseudomallei 91]
          Length = 126

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 5   SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + + R FVD  L          D   + AHVLR++ GD + LF+G  G++ +++  + K 
Sbjct: 17  AAVPRFFVDAALRADATLALPADVARH-AHVLRLQPGDALALFDGTGGQYRARLVEIDKR 75

Query: 65  IRFKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112
                   ++         V         +++D++I+K+VE+G+ A+ P+
Sbjct: 76  GALARIDAFEPAEAEPPYRVTLAQGIAGGDKMDWVIEKAVELGVAAVAPL 125


>gi|34558434|ref|NP_908249.1| 16S ribosomal RNA methyltransferase RsmE [Wolinella succinogenes
           DSM 1740]
 gi|34484153|emb|CAE11149.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 220

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 24/235 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG--KDGEWLSKISYVGKS 64
           ++ L++        + +  G+++HYL  V R K  + + LF        +  K + + K 
Sbjct: 1   MQFLYLKESGAP--RLRIEGEEFHYLFKVRRTKS-EELPLFRNLEDGKLYRYKAAEIAKR 57

Query: 65  IRFKVEYQSRSQTKQSDV--QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-H 121
                  +++ + K        +++ +    ++  +    E+G+G I     RY+Q    
Sbjct: 58  HADLELLEAKEEEKIPCAFFHLLWAVVDAKTIEKSLPMLNELGVGKISFFYARYSQRDIR 117

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
            +M+R+    I + EQ     LP I     LE LL+ +     + F     G E    K+
Sbjct: 118 LDMERLGRILIHSCEQSGRTRLPVIECFKNLEELLECYSDFGVMDF-----GGEILQPKV 172

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMA 235
                    AI++GPEGG+  EE+E L      +    G   IL+S+TAA+ A+A
Sbjct: 173 CQ-------AIMVGPEGGFSQEEREKLVGQKRYSS---GENLILKSETAALFALA 217


>gi|149195029|ref|ZP_01872121.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2]
 gi|149134742|gb|EDM23226.1| hypothetical protein CMTB2_05996 [Caminibacter mediatlanticus TB-2]
          Length = 219

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 23/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65
           ++ L+         Q + +G+ + YL  V R+K+ + + + N KD   +  KI  + K  
Sbjct: 1   MQFLYHPE---TSNQIEITGESHKYLFKVRRIKKDELVKIRNLKDDILYTYKILEINKKS 57

Query: 66  -RFKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THY 122
              ++  +  S  K    +   +  I+   ++ ++    E+G+  I      Y+Q     
Sbjct: 58  STLQLINKEFSPNKPKEFLHLAWCIIEPKNIEKVLPSLNEIGVSKISFTYCDYSQKNFKL 117

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           N++R++   I++++QC    +  I    + +   + + +   + F     G E    K +
Sbjct: 118 NLNRLQKILINSSQQCGRSNIIEIEIINSSKEFFEKYQNFTALDF----NGKEIECNKKY 173

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                    ILIGPEGG+  EE+       F   + L   IL+S+TAA  A++
Sbjct: 174 TNP------ILIGPEGGFSEEER-----KKFTEIIKLKSFILKSETAA-CAIS 214


>gi|303284987|ref|XP_003061784.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457114|gb|EEH54414.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 184

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-RVRTYTISAAEQC 138
            +V      +K  R D++++K  E+G  ++ P +T  +  T    + R      +A++QC
Sbjct: 2   WEVAVACGGLKGGRADWLVEKLAELGAASLAPTLTARSAVTKRGREGRWVRVAAAASKQC 61

Query: 139 DILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAI------------A 185
                  +  P   + LL+   D    ++ A       ++L                   
Sbjct: 62  LRTHALVVESPCAFDALLRRVRDAPIALLAAAGAPPLRDALRDADVDDGDDGETASGPGR 121

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                 +++GPEG +  +E   L      TP+ LGP  LR +TAAVA MA V
Sbjct: 122 GATGGLLIVGPEGDFTEDELGALIDAG-ATPVGLGPLRLRVETAAVALMACV 172


>gi|32266493|ref|NP_860525.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter hepaticus
           ATCC 51449]
 gi|32262544|gb|AAP77591.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 236

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 94/236 (39%), Gaps = 13/236 (5%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65
           ++  F+            + +  +YL  V R++ G+ + L N   D  +  ++S + K  
Sbjct: 1   MQ--FLYHKDAGNPLVSVNDENVNYLMKVRRVQLGETLALRNLNDDNLYTYELSEIDKKA 58

Query: 66  RFKVEYQSRSQTKQ--SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
                  S++      S +  +++ I+   ++  +    E+G+  I      ++Q     
Sbjct: 59  LTLRLQASQNAPSNIKSHLHLLWAIIEPKIIEKTLPMLNELGVSRISFFYAAFSQGHFKL 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           ++ R+    I + +QC    L  +        + + +       F      +    +   
Sbjct: 119 SLPRMEKILIQSCQQCGRSDLMELELYKNFHRICEEYTDFYAFDFGGVDICNFTPCQNHS 178

Query: 183 AIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMAL 236
            I    + V I++G EGG+ ++E+E      F   ++L    ILRS++A+V   ++
Sbjct: 179 KIGKEKHLVRIMVGAEGGFSTKERER-----FAKIITLNDTLILRSESASVFIASI 229


>gi|329728328|gb|EGG64765.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 21189]
          Length = 134

 Score =  118 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 7   LKRLFVDFPLCIKTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKS 64
           ++R F+D    +  +   +  +  H++ +V+R   G  I+L       +L +I+ +    
Sbjct: 1   MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDK 60

Query: 65  IRFKV-EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------ 117
           I   + E Q+ +     DV      IK ++ ++++QK+ E+G  +   V    +      
Sbjct: 61  IEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNE 120

Query: 118 QNTHYNMDRVRT 129
                 ++R   
Sbjct: 121 AKVAKKIERWTK 132


>gi|324998264|ref|ZP_08119376.1| protein involving differentiation [Pseudonocardia sp. P1]
          Length = 239

 Score =  118 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS--YVGKSIRFKVEYQSRS 75
              +    G +  + A V R++ G+ ++L +G+ G   +++       ++  +V    R+
Sbjct: 18  PGGRTLLDGPEGRHAATVRRLRPGEALVLSDGRGGLAHAEVVAPEGKDALSLRVLETLRT 77

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NTHYNMDRVR 128
                 V    + +K +R +  ++ + E G   I P                   + R R
Sbjct: 78  PPPAVRVVVAQALVKGDRGELAVETATEAGADGILPWTASRCVARWDDGPRGAKALARWR 137

Query: 129 TYTISAAEQCDILTLP 144
           +    AA+Q      P
Sbjct: 138 STVREAAKQARRPWQP 153


>gi|296119869|ref|ZP_06838423.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967023|gb|EFG80294.1| RNA methyltransferase, RsmE family [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 81/228 (35%), Gaps = 20/228 (8%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLF----------NGKDGEWLSKISYVGKSIRF 67
                  +G +  +   V R+  G+ +LL           +G   E     ++    +  
Sbjct: 16  QGDVLTLTGAEGRHAVTVKRLAPGEQVLLVHAPDTPSLVDDGLFVEATVHETHGKDELVV 75

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTH 121
           +V+    +      V  + +  K+ R +  I  + + G        +         +   
Sbjct: 76  RVDVVGATPAPNPRVTVVQAIPKSERSELAIDLATQAGADEFIAWQSDRCIAKWDAKKAP 135

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSL 178
             + + +    SAA+Q     +PF + P T   L   L   +     V  ++   S   +
Sbjct: 136 KALQKWQAQAQSAAKQSRRTRVPFAHGPLTTAQLVQHLAEREDCLIYVLHEDATDSIKDV 195

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                 A   ++ +LIGPEGG   EE  TL       P+ LGP +LR+
Sbjct: 196 PLTTDAATSTDLILLIGPEGGIGPEELATLQKAG-AHPIKLGPEVLRT 242


>gi|255321812|ref|ZP_05362962.1| ribosomal RNA small subunit methyltransferase E [Campylobacter
           showae RM3277]
 gi|255300916|gb|EET80183.1| ribosomal RNA small subunit methyltransferase E [Campylobacter
           showae RM3277]
          Length = 218

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 27/231 (11%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKS-IR 66
           F+        Q +  G+ + +L    R K G+ I    L +G++  +  +I  + K    
Sbjct: 3   FLYSKEAKNEQIRLDGEAFLHL-KARRAKLGERIDVRNLTDGQNHIY--EIVNLDKRGAE 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD- 125
             + +    + + SD+   ++ +    ++  +    EMG+  I      ++Q  ++ +D 
Sbjct: 60  LNLIFSHDVEARNSDLTLAWAVVDPKTIEKTLPGLNEMGVAKIVFFYGEFSQK-NFKLDF 118

Query: 126 -RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            R+    IS+ EQC    L       +L+ L+K + +   I F  E        E     
Sbjct: 119 SRLERILISSCEQCGRNDLMKFEIYKSLDELVKFYPNVALIDFEGENLDGYAGKE----- 173

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA--AVAA 233
                  + IGPEGG+   E+E +     +        ILRS TA   +AA
Sbjct: 174 ------ILAIGPEGGFSQSEREAVAKKYGLRA----KNILRSQTAILGIAA 214


>gi|302518999|ref|ZP_07271341.1| involving differentiation [Streptomyces sp. SPB78]
 gi|302427894|gb|EFK99709.1| involving differentiation [Streptomyces sp. SPB78]
          Length = 141

 Score =  116 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 1/135 (0%)

Query: 110 RPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169
           R V          ++ + R     A +Q      P I    + +            V   
Sbjct: 7   RCVTQWRGDRGAKSLAKWRATAREAGKQSRRPRFPEIAEAVSTKEAAALLSRAALAVVLH 66

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           E  G+ ++      +    ++ +++GPEGG   EE  +  +        LGP +LR+ TA
Sbjct: 67  EDTGTASTPLATLPLPDEGDIVLVVGPEGGVAPEEIASFTAAG-AHVCRLGPSVLRTSTA 125

Query: 230 AVAAMALVQAICGDW 244
             AA+AL+    G W
Sbjct: 126 GTAAIALLSGRTGRW 140


>gi|206602521|gb|EDZ39002.1| Conserved protein of unknown function [Leptospirillum sp. Group II
           '5-way CG']
          Length = 287

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 98/237 (41%), Gaps = 20/237 (8%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGK-SIRFKVEYQSRSQTKQ-SDV 82
            +   +L   LR KEGD+    + +    +   +      S++  V+ +  ++T     +
Sbjct: 31  RELSRHLLSSLRAKEGDSFPFSDPETGTIYRGTLVSREPCSLKLVVDSEHATRTHFFPRL 90

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY-------TQNTHYNMDRVRTYTISAA 135
             +FSP+K +     +  +V  G+  ++PVI+         ++       R        +
Sbjct: 91  GIVFSPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWSESEGWSSKAKRFAGIVREKS 150

Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA-------HIP 188
           +     T   I  P +L+  LKN   +  + F ++  G+ + ++ + ++           
Sbjct: 151 QLAGRTTRMHIASPLSLKESLKNRSSDVFLWFDEDPVGALDPMKVIDSLRRFSLQFWEQK 210

Query: 189 NVAILIGPEGGYHSEEKETLH---SLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            +  ++GPEGG+  ++++ L        V  +SLG R+   + A +A++  +    G
Sbjct: 211 TIWSVVGPEGGWSPKDRDCLREPEEKGSVFRVSLGERVFSGEMALLASILFLGTFLG 267


>gi|319440584|ref|ZP_07989740.1| hypothetical protein CvarD4_02357 [Corynebacterium variabile DSM
           44702]
          Length = 251

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 33/224 (14%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS 80
           Q      +  + A V R++ G+ ++L +G      +                  +++ + 
Sbjct: 23  QFTLPAAEAKHAA-VKRIRTGEPVVLTDGSGRGVSAAFGTAD---TVTGSGVLPARSPRP 78

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ--------NTHYNMDRVRTYTI 132
            V  + +  K+ R +  +  +V+ G   I P  +                   +     +
Sbjct: 79  RVTVVQAIPKSERSELAVDLAVQAGADRIIPWQSDRCIAKWDGKPGKAEKARAKWEAAAV 138

Query: 133 SAAEQCDILTLPFIYPPTT----LEFLLKNW------DHNCQIVFADETCGSENSLEKLH 182
           SA +Q   L    +    T    L   L +       D    +V  +E       L+   
Sbjct: 139 SAMKQSRRLDGAHVGDLLTDIDDLADALADRPWAEPVDSVLILVLHEEAATPLAQLDL-- 196

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
               +  + ++IGPEGG    E E         P+ LGP + R+
Sbjct: 197 ---DVDEIVLVIGPEGGVSPREVEA------GQPVVLGPEVYRT 231


>gi|157738266|ref|YP_001490950.1| 16S ribosomal RNA methyltransferase RsmE [Arcobacter butzleri
           RM4018]
 gi|157700120|gb|ABV68280.1| conserved hypothetical protein (DUF558 domain protein) [Arcobacter
           butzleri RM4018]
          Length = 223

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 38/243 (15%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65
           ++  F     C     +   + Y+YL    R K  D I   N KD   +L KIS++ K  
Sbjct: 1   MQ--FTYDEFCGNESLEIKDEVYNYLIKARRHKIDDEIYFRNLKDEYIYLYKISFIDKKK 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP----IKTNRLDYMIQKSV----EMGMGAIRPVITRYT 117
                     +  +++ +          K       I+K +    E+G+  I  + + ++
Sbjct: 59  ALLNLLSKEEKVLENEKKLHLGWCIVDPK------TIEKYITSLNEIGIEKITFIYSDFS 112

Query: 118 QN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           Q     N++++    I+++ QC   ++  +     L+  +K  D    + F         
Sbjct: 113 QKNFKINIEKLEKILINSSSQCGRSSIIKLEICKNLDEFMKKNDEVYFLDF--------- 163

Query: 177 SLEKLHAIAHIPNV-AILIGPEGGYHSEEKETLHSL---PFVTPLSLGPRILRSDTAAVA 232
                       N+  ++IG EGG+   E++  +      F + L     ILRS+TA ++
Sbjct: 164 --STTSIDEKKENIKTLVIGCEGGFSKNERDKFNKNFIVGFDSNL-----ILRSETAIIS 216

Query: 233 AMA 235
           A +
Sbjct: 217 ASS 219


>gi|152991814|ref|YP_001357535.1| 16S ribosomal RNA methyltransferase RsmE [Sulfurovum sp. NBC37-1]
 gi|151423675|dbj|BAF71178.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 223

 Score =  115 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 24/236 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65
           ++ L+ +       Q    GD + YL  V R K  D I L N   +      I+++ K  
Sbjct: 1   MQYLYNEEAGSP--QLTLEGDAHRYLFKVRRQKADDTIYLRNLNDNQLHRYAITHIDKRS 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
                 +S     ++          I    ++ ++    EMG+  I  +  + +Q +   
Sbjct: 59  ATLTLEESTVLEIKASKVLHVGWCVIDPKNIEKVLPSLNEMGVAKITFIYCKRSQKSFKP 118

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           +  R+    +++++Q     +  +     L   L     +  + F      SEN+   + 
Sbjct: 119 DFKRLEKILLNSSQQSGRSEMMQLEMAEDLRSFLAENPQSKMLNF------SENNF--IS 170

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHS---LPFVTPLSLGPRILRSDTAAVAAMA 235
             A I    I+IG EGG+H +E         L F TPL     +L+S++A  A  +
Sbjct: 171 GAADIE--TIVIGCEGGFHEDEVALFDEEMILGFDTPL-----VLKSESAVCAVAS 219


>gi|331082512|ref|ZP_08331637.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400490|gb|EGG80120.1| hypothetical protein HMPREF0992_00561 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 151

 Score =  115 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R FV+       Q   SG   +++ +VLRMK  + IL+ +G+D E+   I  +G+   
Sbjct: 1   MYRFFVEPSQIKDNQICISGSDVNHIKNVLRMKLKEEILISSGEDKEYTCYIEEIGEEEI 60

Query: 67  FKVE--YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRY 116
                  Q       S +       K+++++ +IQK+VE+G+  + PV ++ 
Sbjct: 61  LAHIMYVQEAGYELSSKIYLFQGLPKSDKMELIIQKAVELGVHQVIPVASKR 112


>gi|320096055|ref|ZP_08027656.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976995|gb|EFW08737.1| RsmE family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 263

 Score =  115 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 18/228 (7%)

Query: 16  LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR 74
           L    + +  GD+  + A V R+  G+ + + +G+    + ++    K+ +   V     
Sbjct: 18  LEAGARARLGGDEGRHAAQVRRIGAGEWVDVVDGRGRRLVCEVVGASKTGLDLVVASAVD 77

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVR 128
                     + +  K    +  +    ++G+GA+ P  +                 + +
Sbjct: 78  EAGPAVRTVLVQALAKGGHDEQAVDVCTQIGVGAVVPWASERAVVRWSGPRALKGRAKWQ 137

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGS--ENSLEKLH 182
               +AA+Q     +P +  P     LL    +  +    ++   E  G+   + L+ L 
Sbjct: 138 GVARAAAKQARRAFVPEVGEPLDTRGLLGWVGRLVEAGGAVLVCHEEAGAGIGSVLDGLR 197

Query: 183 AIAHI----PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
           A +        VA+++GPEGG    E E L        + +GP +LRS
Sbjct: 198 ADSPGGRLSGRVAVVVGPEGGISPGESEALVGAGAAL-VGVGPTVLRS 244


>gi|223038686|ref|ZP_03608979.1| RNA methyltransferase, RsmE family [Campylobacter rectus RM3267]
 gi|222880088|gb|EEF15176.1| RNA methyltransferase, RsmE family [Campylobacter rectus RM3267]
          Length = 218

 Score =  115 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 33/231 (14%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKS-IR 66
           F+        + +  G+ + +L    R K G+ I    L +G++  +  +I  + K    
Sbjct: 3   FLYSKEAKNERIRLEGEAFLHL-KARRAKIGERIDVRNLTDGQNHIY--EIINLDKRGAE 59

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMGMGAIRPVITRYTQNTHY 122
             + +    + + S++   ++ +        I+K++    E+G+  I      ++Q  ++
Sbjct: 60  LNLIFSHDVEARNSNLTLAWAVVDPK----TIEKALPSLNEIGVAKIVFFYGEFSQK-NF 114

Query: 123 NMD--RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            +D  R+    IS+ EQC    L       +L+ L+K + +   I F  E        E 
Sbjct: 115 KLDFSRLERILISSCEQCGRNDLMKFEIYKSLDELVKFYPNVALIDFEGENLDGYAGKE- 173

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
                      + IGPEGG+   E+E +     +        ILRS TA +
Sbjct: 174 ----------ILAIGPEGGFSRSEREAVAKKYGLKA----KNILRSQTAIL 210


>gi|317014464|gb|ADU81900.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Gambia94/24]
          Length = 226

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLELRNLKDGFLYTYEHAEIAKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQVLEVIPSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +    + + +L  + +   + F  ET  +  + EK   
Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFPSTKEVLNAYPNASVLDFNGETLPTSANFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   I+IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GIIIGPEGGFSEQEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|315636555|ref|ZP_07891791.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479204|gb|EFU69901.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 223

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 38/243 (15%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD-GEWLSKISYVGKSI 65
           ++  F     C     +   + Y+YL    R K  D I   N KD   +L KIS++ K  
Sbjct: 1   MQ--FTYDEFCGNETLEIKDEIYNYLIKARRHKIDDEIYFRNLKDEYIYLYKISFIDKKK 58

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP----IKTNRLDYMIQKSV----EMGMGAIRPVITRYT 117
                     +  +++ +          K       I+K +    E+G+  I  + + ++
Sbjct: 59  ALLNLLSKEEKVLENEKKLHLGWCIVDPK------TIEKYITSLNEIGIEKITFIYSDFS 112

Query: 118 QN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           Q     N++++    I+++ QC   ++  +     L+  +K  D    + F         
Sbjct: 113 QKNFKINIEKLEKILINSSSQCGRSSIIKLDICKNLDEFMKKNDEVYFLDF--------- 163

Query: 177 SLEKLHAIAHIPNV-AILIGPEGGYHSEEKETLHSL---PFVTPLSLGPRILRSDTAAVA 232
                       N+  ++IG EGG+   E++  +      F + L     ILRS+TA ++
Sbjct: 164 --STTSIDEKKENIKTLVIGCEGGFSKNERDKFNKNFIVGFDSNL-----ILRSETAIIS 216

Query: 233 AMA 235
           A +
Sbjct: 217 ASS 219


>gi|307637746|gb|ADN80196.1| Ribosomal RNA small subunit methyl transferase E [Helicobacter
           pylori 908]
 gi|325996346|gb|ADZ51751.1| Ribosomal RNA small subunit methyltransferase E [Helicobacter
           pylori 2018]
 gi|325997935|gb|ADZ50143.1| 16S ribosomal RNA methyltransferase [Helicobacter pylori 2017]
          Length = 226

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQPLGVIPSKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  + +L  +     + F  E   +  + EK   
Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFSNTKEVLNAYPKASVLDFNGEALPASANFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   I+IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GIIIGPEGGFSEQEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|124514677|gb|EAY56189.1| conserved protein of unknown function [Leptospirillum rubarum]
          Length = 282

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 93/230 (40%), Gaps = 22/230 (9%)

Query: 26  GDQYHYLAHVLRMKEGDNILLFNGK-DGEWLSKISYVGKSIRFKVEYQSRSQTKQ---SD 81
            +   +L   LR KEGD+    + +    +   +         K++ +S   +++     
Sbjct: 31  RELSRHLLSSLRAKEGDSFPFSDPETGTIYRGTLVSRE-PCSLKLDIESGRISRKHFFPR 89

Query: 82  VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISA 134
           +  +FSP+K +     +  +V  G+  ++PVI+  +               R        
Sbjct: 90  LGIVFSPLKGDSFSEALSMAVMAGIDILQPVISDRSIVRWPEGDGWASKAKRFAGIVREK 149

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP------ 188
           ++     T   I  P +L   LKN   +  + F +++ G+ + ++ + ++   P      
Sbjct: 150 SQLAGRATRMRIASPLSLRESLKNRASDVFLWFDEDSAGALDPMKAIDSLRRFPIQFWEQ 209

Query: 189 -NVAILIGPEGGYHSEEKETLH---SLPFVTPLSLGPRILRSDTAAVAAM 234
             +  ++GPEGG+   +++ L        V  +SLG RI   + A + A+
Sbjct: 210 KTIWSVVGPEGGWSPRDRDCLRDPEEKGSVFRISLGERIFSGEMALLTAI 259


>gi|257459141|ref|ZP_05624260.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268]
 gi|257443526|gb|EEV18650.1| RNA methyltransferase, RsmE family [Campylobacter gracilis RM3268]
          Length = 218

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 28/236 (11%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS-IRF 67
            F D  L  +       DQ+ +L  V R + G+ I + N +DG  +L +I  + +     
Sbjct: 3   YFYDK-LAGEQSLVLQNDQFLHL-KVRRARAGERIDVRNLEDGASYLYEIVEISRKGAAL 60

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMGMGAIRPVITRYTQN-THY 122
            + ++S   T   D    ++ +++     +I+KS+    EMG+G +  V    +Q     
Sbjct: 61  NLVFKSSVFTPSHDFCVAWAVVESA----VIEKSLPALNEMGVGRLVLVYADLSQKNVRL 116

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           +  R+    I++++QC   ++  I   +  + L + +++   I F     G +N      
Sbjct: 117 DPQRMERILINSSQQCGRNSIMQIEVLSGSDELAQRYENVSLIDF-----GGKN-----I 166

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
            I     +A  +GPEGG+   E+E   +   +      P ILRS+TA +A  A + 
Sbjct: 167 DIFGGDEIA-FVGPEGGFSPREREKFKNAYALNS----PYILRSNTALIATCAKLM 217


>gi|305432700|ref|ZP_07401860.1| RsmE family RNA methyltransferase [Campylobacter coli JV20]
 gi|304444209|gb|EFM36862.1| RsmE family RNA methyltransferase [Campylobacter coli JV20]
          Length = 217

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 22/232 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGK-S 64
           ++  F+      +   K  G+++ +L    R+KE + + L N   D  +  KIS + + S
Sbjct: 1   MQ--FLYHKQAGEEILKLKGEEFAHL-KARRIKENEILSLRNLEDDFIYEYKISNLDRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
                 ++      QS++    + I T  L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CLLYFLHKHFKSHPQSELDLALAVIDTKILEKTLPFLNELGVKKLHLVFTEFSQRNFKLD 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R+    IS+ EQC       I     ++   K +     + F  E    + +      
Sbjct: 118 FERLEKIIISSCEQCGRSHKMQIQSYKNIQEFSKVFPDAVLVDFEGEVKEFDKTR----- 172

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                     IGPEGG+  +EK+       +      P ILRS +AA+A  A
Sbjct: 173 -------LYFIGPEGGFSPKEKQMFKEKICLKA----PNILRSQSAAIAVAA 213


>gi|42527383|ref|NP_972481.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC
           35405]
 gi|41817968|gb|AAS12392.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC
           35405]
          Length = 257

 Score =  113 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 20/240 (8%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKD--GEWLSKISYVGKSIRFKVEYQS- 73
            K   +     Y+YL  V R+KEG  + +  NG       + KI+   K I  ++  +  
Sbjct: 11  DKDIIRLDKKDYNYLVSVRRIKEGQVLKISLNGVKPASAEVFKINTEKKYIELRLLKEEF 70

Query: 74  ----RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDR--- 126
                    ++++  +   IK N +D  ++++ E G   I PV+  ++     N+++   
Sbjct: 71  AFDAEPYKPRAEIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSVVKKENINQTER 130

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLK---NWDHNCQ---IVFADETCGSENSLEK 180
                  A +Q   +    I P   L+  L    ++  N +   I+ +++  GS +  + 
Sbjct: 131 RERIIREARQQSGSVVNTKILPAQELKAALDSVLDYTANRKTAFIMLSEKKVGSFSFFDC 190

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           L A      + + IG EGG  S+E E L    F   +     +LR++TAA+ ++A  Q I
Sbjct: 191 LSAETEA--IVLAIGCEGGIGSKEIEFLKEHKFEE-VHFNTNVLRAETAAIYSIAAAQVI 247


>gi|217032602|ref|ZP_03438091.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128]
 gi|298735918|ref|YP_003728443.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           pylori B8]
 gi|216945738|gb|EEC24363.1| hypothetical protein HPB128_159g28 [Helicobacter pylori B128]
 gi|298355107|emb|CBI65979.1| ribosomal RNA small subunit methyltransferase E [Helicobacter
           pylori B8]
          Length = 226

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           FV  PL  +   K  G+ Y +L    R+K    + L N KD   +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSLLYTYEHAEITKKHALLR 62

Query: 70  EYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
               R            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGGRPLEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I++ EQC    L  +      + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILINSCEQCGRSVLMELEAFPNTKEMLNAYPKASVLDFKGETLPASADFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEQEREQFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|15612072|ref|NP_223724.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori J99]
 gi|8928475|sp|Q9ZKD2|RSME_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|4155595|gb|AAD06587.1| putative [Helicobacter pylori J99]
          Length = 226

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGVQPLEIMANKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  +  LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFSNTKEALKAYPKASVLDFNGETLPASADFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                   ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q
Sbjct: 180 -------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225


>gi|942589|gb|AAC44027.1| unknown [Mycoplasma iowae]
          Length = 145

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 100 KSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           K  E+ +  I PV+   +QN  + +  R+    + + +Q + +    I      + LL+ 
Sbjct: 1   KLNELNISKIVPVVFSRSQNNIYLDYKRLNRIVVESCKQSNRVNPLIIENQIKFDELLEK 60

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
              +       E   S+N       I +   +  +IG EGG+  +E   L+SL    P++
Sbjct: 61  IKGSTT-FLCSEKETSKNINNYDLKIKNGDIINFIIGCEGGFTIDELNQLNSL--TLPIT 117

Query: 219 LGPRILRSDTAAVAAMALV 237
           L   ILRS+TAA+ A +++
Sbjct: 118 LTKTILRSETAAIYAASIL 136


>gi|154149486|ref|YP_001406011.1| hypothetical protein CHAB381_0412 [Campylobacter hominis ATCC
           BAA-381]
 gi|153805495|gb|ABS52502.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 219

 Score =  111 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 101/229 (44%), Gaps = 19/229 (8%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVG-KSIRF 67
            F D       Q K + +Q+ +L    R+K G+ I + N KDG  ++ +I  +  K    
Sbjct: 3   YFYDET-AGNEQLKITNEQFSHL-KARRLKAGERIDVRNLKDGFNYIYEIMEISRKEALC 60

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDR 126
           ++ +++    K  D    ++ ++   ++  +    E+G+G +  V + ++Q     ++ R
Sbjct: 61  ELIFKNSVIEKTPDFTVAWAVVENAVIEKTLPSLNEIGIGKVILVYSDFSQKNIKPDLKR 120

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +    I++++QC   ++  I    + + L K +     ++          SLE       
Sbjct: 121 MERILINSSQQCGRNSILEIEILNSSDELSKKFQDKISLI-----DFGGKSLEIF----G 171

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
              +A  +GPEGG+   E++   +   +      P ILRS+TA ++  A
Sbjct: 172 NDEIA-FVGPEGGFSERERKLFKNSYAINS----PYILRSNTAILSVCA 215


>gi|323445090|gb|EGB01887.1| hypothetical protein AURANDRAFT_35679 [Aureococcus anophagefferens]
          Length = 188

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IRFKVEYQSRSQTKQ 79
           + S  Q+ Y+A V+R++EGD +  F    GEW   +    +    +   V+ +     + 
Sbjct: 46  ELSPAQHRYVATVMRLREGDALRCFGAAMGEWACAVETTTRRGTTVAAAVQTRPPPGDET 105

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--DRVRTYTISAAEQ 137
             +   F+P++  R   +I+K+VE+G   + PV T   +          +    + AAEQ
Sbjct: 106 PRLDLYFAPLRKKRTSLLIEKAVELGATRLAPVKTERVERASLAALGAGIHASAVEAAEQ 165

Query: 138 CDILTLPFIYPPTTLEFLLKNWD 160
           C+ L +P +     L   L +  
Sbjct: 166 CERLRVPVVEDVVDLASPLGDLP 188


>gi|296272043|ref|YP_003654674.1| hypothetical protein Arnit_0503 [Arcobacter nitrofigilis DSM 7299]
 gi|296096218|gb|ADG92168.1| protein of unknown function DUF558 [Arcobacter nitrofigilis DSM
           7299]
          Length = 222

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 30/239 (12%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKS- 64
           ++  FV          K  GD Y YL    R K G  +   N K+   +  +I  + K  
Sbjct: 1   MQ--FVYSSEASLETIKVEGDIYKYLFKARREKIGSTVFFRNLKNNFIYSYEIFDISKKD 58

Query: 65  -IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK----SVEMGMGAIRPVITRYTQN 119
                ++ + +     + +  I++ +        I+K      E+G+  I      Y+Q 
Sbjct: 59  ANLRLIKKEEKIVEANNKLHIIWAIVDPK----TIEKQLPYLNEIGVDKITFFYADYSQK 114

Query: 120 -THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
               N+++     I++++QC   ++  +    +L+ +L ++  +    F++     +  +
Sbjct: 115 NFKLNIEKFEKILINSSQQCGRSSIIKLEIIASLDEVLTSYKDSFVFNFSNNHINDKKDI 174

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR-ILRSDTAAVAAMAL 236
           +            I++G EGG+  +E E          + +    ILRS+TA V  +A 
Sbjct: 175 KS-----------IIVGCEGGFSPKELEKFTEE---KTVGINSNLILRSETA-VTTIAA 218


>gi|325473652|gb|EGC76841.1| hypothetical protein HMPREF9353_01943 [Treponema denticola F0402]
          Length = 257

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 21/251 (8%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKD--GEWLSKISYVGK 63
           +K+L V      K   + +   Y+YL  V R+KEG  + +  NG       + KI+   K
Sbjct: 1   MKQLIVSAE-PDKDIIRLNKKDYNYLVSVRRIKEGQVLNISLNGVKPASAEVFKINTEKK 59

Query: 64  SIRFKVEYQSRSQTKQSD-----VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
            I  ++  +  +   +       +  +   IK N +D  ++++ E G   I PV+  ++ 
Sbjct: 60  YIELRLLKEEFAFDAEPYKPRAEIILMQWLIKGNHMDIAVRQAAEAGCSLIVPVLGEFSV 119

Query: 119 NTHYNMDR---VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFAD 169
               N+++          A +Q   +    I P   L+  L +            I+ ++
Sbjct: 120 IKKENINQTERRERIIREARQQSGSVVNTKILPAQELKAALDSVLEYTAKRKTAFIMLSE 179

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +  GS +  + L A   +  + + IG EGG  S+E E L    F   +     +LR++TA
Sbjct: 180 KKTGSFSFFDCLSAETEV--IVLAIGCEGGIGSKESEFLKEHKFEE-VHFNTNVLRAETA 236

Query: 230 AVAAMALVQAI 240
           A+ ++A  Q I
Sbjct: 237 AIYSIAAAQVI 247


>gi|57168671|ref|ZP_00367803.1| conserved hypothetical protein TIGR00046 [Campylobacter coli
           RM2228]
 gi|57019952|gb|EAL56632.1| conserved hypothetical protein TIGR00046 [Campylobacter coli
           RM2228]
          Length = 217

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 22/232 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN-GKDGEWLSKISYVGK-S 64
           ++  F+      +   K   +++ +L    R+KE + + L N   D  +  KIS + + S
Sbjct: 1   MQ--FLYHKQAGEEILKLKSEEFAHL-KARRIKENEILSLRNLEDDFIYEYKISNLDRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
                 ++      QS++    + I T  L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CLLYFLHKHFKSHPQSELDLALAVIDTKILEKTLPFLNELGVKKLHLVFTEFSQRNFKLD 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +R+    IS+ EQC       I     ++   K +     + F  E    + +      
Sbjct: 118 FERLEKIIISSCEQCGRSHKMQIQSYKNIQEFSKVFPDAVLVDFEGEVKEFDKTR----- 172

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                     IGPEGG+  +EK+       +      P ILRS +AA+A  A
Sbjct: 173 -------LYFIGPEGGFSPKEKQMFKEKICLKV----PNILRSQSAAIAVAA 213


>gi|145628643|ref|ZP_01784443.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae
           22.1-21]
 gi|144979113|gb|EDJ88799.1| hypothetical protein CGSHi22121_06495 [Haemophilus influenzae
           22.1-21]
          Length = 99

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I P   L+      D   ++        S  +L  + A      V +LIG EGG  +
Sbjct: 1   MPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA----EGVRLLIGSEGGLSA 56

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           +E        F T + LG R+LR++TA++AA++ +Q   GD
Sbjct: 57  QEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQICFGD 96


>gi|307546094|ref|YP_003898573.1| hypothetical protein HELO_3504 [Halomonas elongata DSM 2581]
 gi|307218118|emb|CBV43388.1| hypothetical protein HELO_3504 [Halomonas elongata DSM 2581]
          Length = 237

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 9/213 (4%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKI-SYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           +L  V R + GD + L           +  Y      F +     +      V  + +  
Sbjct: 27  HLRDVHRARAGDTLTLGVENGLLGRGTLLEYRDDEALFDISGLVETPPPALPVHLVLALP 86

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILTLP 144
           +   L   ++ +  +G+ A+  + TR  + +         +++R + +   EQ     +P
Sbjct: 87  RPRMLARSLEHATALGVKALTLLNTRRVEKSYWQSPELGAEKIRRHLVLGLEQARDTQMP 146

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +         ++  D   +++ +     +   + +         V ++IGPEGG+   E
Sbjct: 147 EVTLAKGFRPFVE--DRLPKLLASSRGLVAHPGMPEACPRGVDEPVTLVIGPEGGFIPWE 204

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            + L        + LGPRILR +TA  A +A +
Sbjct: 205 VDKLLEAG-CRGIHLGPRILRVETAVTALLARL 236


>gi|149184078|ref|ZP_01862426.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1]
 gi|148848212|gb|EDL62514.1| hypothetical protein BSG1_17545 [Bacillus sp. SG-1]
          Length = 114

 Score =  109 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE----NSLEKLHAIAHIPNV 190
           AEQ     +P +  P +L  L+   D+    V A E         N    L +      +
Sbjct: 1   AEQSHRQHVPNVEFPVSLTELVTLADNFDYKVVAFEEDAKIGEQSNLAGILRSAKPGDRL 60

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             + GPEGG   +E   L    FV+   LGPRI+R++TA +  ++      
Sbjct: 61  LAVFGPEGGLTEKEVNVLKDHGFVS-CGLGPRIMRAETAPLYLLSAASYQF 110


>gi|307721833|ref|YP_003892973.1| hypothetical protein Saut_1918 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979926|gb|ADN09961.1| protein of unknown function DUF558 [Sulfurimonas autotrophica DSM
           16294]
          Length = 229

 Score =  109 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 18/231 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD--GEWLSKISYVGKSI-- 65
           +++      K      G+ Y YL  V R KEGD +   N +D     L KI+ +      
Sbjct: 8   IYLYEENAGKQSFSIKGELYKYLVKVRRHKEGDELGFRNKEDIKTLHLYKITAIEPRALH 67

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NM 124
             K+  Q      +  +   +  I +  ++ ++    E+G+  I  +    +Q     + 
Sbjct: 68  VEKISSQVLEIKAKQKLHVAWCIIDSKSVEKVLASLNEIGVAKISFIYCDRSQKNFKPDF 127

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            R      ++ +QC    +        +   +  +       F D         + L   
Sbjct: 128 KRYERILQASNQQCGRTQMMEFDIYENIADFIHKFPDTKVFDFTD---------KILEDG 178

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           A    V  LIG EGG+  +EKE L S       +  P ILRS+TA +A  +
Sbjct: 179 AEFKRV--LIGCEGGFSEKEKELLKSQEVFRLNT--PMILRSETAVLAVAS 225


>gi|317011277|gb|ADU85024.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           SouthAfrica7]
          Length = 226

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 25/239 (10%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           FV  PL  +   K  G+ Y +L    R+K    + L N  D   +  +   + K      
Sbjct: 3   FVYHPLAKEPTLKIEGESYTHLYRSRRIKIASVLDLRNLNDNFLYTYEHVEITKKHALLR 62

Query: 70  EYQSRSQT----KQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-- 122
               R       K++ +      IK+  ++   + +   +G+  +      ++Q      
Sbjct: 63  LVGQRELEVMTSKKTHLILSVIEIKSIEKMLPFLNQ---LGVNKLSLFYADFSQRNEKID 119

Query: 123 --NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
              ++R +   I++ EQC    L  +   +  + +LK +     + F  +T  +  + EK
Sbjct: 120 SAKLERFQKILINSCEQCGRSALMELEVFSNTKEMLKAYPKASVLDFNGKTLQTNFNAEK 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                      ++IGPEGG+   E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 ----------GVIIGPEGGFSEPEREQFRERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|283955603|ref|ZP_06373096.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792828|gb|EFC31604.1| hypothetical protein C1336_000040013 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 218

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 23/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64
           ++  F+      +   +  G+ +++L  V R+KE   + L N +D   +   I+ + + S
Sbjct: 1   MQ--FLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
              K+  +     KQS++    + I    L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CTLKLLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R     IS+ EQC   T   +    + +  ++ + +   + F  E     +  E    
Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSHFDEKE---- 173

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                     IGPEGG+ + E+       F    SL    IL+S TA +A  +
Sbjct: 174 -------LYFIGPEGGFSNNERLL-----FNRKTSLKSSNILKSQTAIIAIAS 214


>gi|208434976|ref|YP_002266642.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27]
 gi|208432905|gb|ACI27776.1| hypothetical protein HPG27_1023 [Helicobacter pylori G27]
          Length = 226

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 33/243 (13%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ-KSVE--------MGMGAIRPVITRYTQNT 120
              +R     +  +             +I+ KSVE        +G+  +      ++Q  
Sbjct: 63  LVGARLLEVMASKKTHLILS-------VIEIKSVEKILPFLNQLGVSKLSLFYADFSQRN 115

Query: 121 HY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +   I + EQC    L  +   +  +  LK +     + F  ET  +  
Sbjct: 116 EKIDSAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASM 175

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             EK           ++IGPEGG+   E+E       +  + L   +L+S++A V   ++
Sbjct: 176 DFEK----------GVIIGPEGGFSEPEREYFKERE-IYRIPL-DMVLKSESACVFVASI 223

Query: 237 VQA 239
            Q 
Sbjct: 224 AQV 226


>gi|317180814|dbj|BAJ58600.1| hypothetical protein HPF32_1018 [Helicobacter pylori F32]
          Length = 226

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K   ++ L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASHLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQTLEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDNAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  +  LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|270263053|ref|ZP_06191323.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13]
 gi|270042741|gb|EFA15835.1| hypothetical protein SOD_d00680 [Serratia odorifera 4Rx13]
          Length = 90

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             LE      D + ++        S N+L        + +V +LIGPEGG  ++E     
Sbjct: 1   MQLEAWCAEQDGSLKLNLHPRASHSINTLPL-----PVDHVRLLIGPEGGLSADEIAMTT 55

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              F T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 56  GYGF-TDILLGPRVLRTETTALTAITALQVRFGD 88


>gi|317012853|gb|ADU83461.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Lithuania75]
          Length = 226

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPILKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I++ EQC    L  +   +  + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILINSCEQCGRSALMELEVFSNTKEMLNAYPKASVLDFNGETLPASADFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+   E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEPEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|207091939|ref|ZP_03239726.1| 16S rRNA m3U1498 methyltransferase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 226

 Score =  108 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V+ Q            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVDAQPLEVIASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEAFSNTKEVLNAYPKASVLDFKGETLPTSVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+   E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEPERGYFKEQK-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|57237164|ref|YP_178176.1| hypothetical protein CJE0152 [Campylobacter jejuni RM1221]
 gi|86149681|ref|ZP_01067911.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88597460|ref|ZP_01100695.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|148926325|ref|ZP_01810009.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157414473|ref|YP_001481729.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205356592|ref|ZP_03223355.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218561837|ref|YP_002343616.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|57165968|gb|AAW34747.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           RM1221]
 gi|85839949|gb|EAQ57208.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88190521|gb|EAQ94495.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359543|emb|CAL34327.1| conserved hypothetical protein Cj0156c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145844717|gb|EDK21822.1| hypothetical protein Cj8486_0152c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157385437|gb|ABV51752.1| hypothetical protein C8J_0153 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345597|gb|EDZ32237.1| hypothetical protein Cj8421_0157 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284925449|gb|ADC27801.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|307747117|gb|ADN90387.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315057596|gb|ADT71925.1| Ribosomal RNA small subunit methyltransferase E [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315927805|gb|EFV07131.1| RNA methyltransferase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315930582|gb|EFV09615.1| RNA methyltransferase family protein [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931969|gb|EFV10922.1| RNA methyltransferase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 218

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64
           ++  F+      +   +  G+ +++L  V R+KE   + L N +D   +   I+ + + S
Sbjct: 1   MQ--FLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
              K   +     KQS++    + I    L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R     IS+ EQC   T   +    + +  ++ + +   + F  E     +  E    
Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQQSHFDEKE---- 173

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                     IGPEGG++++E+       F   +SL    IL+S TA +A  +
Sbjct: 174 -------LYFIGPEGGFNNDERLL-----FNRKISLKSSNILKSQTAIIAIAS 214


>gi|308184819|ref|YP_003928952.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           SJM180]
 gi|308060739|gb|ADO02635.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           SJM180]
          Length = 226

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           FV  PL  +   K  G+ Y +L    R+K    + L N KD   +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDSFLYTYEHAEITKKHALLK 62

Query: 70  EYQSRSQT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
              +R            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGARPLEVMANKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSVLMELEAFSNTKEMLNAYPKASVLDFKGETLPTSMGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|78778105|ref|YP_394420.1| hypothetical protein Suden_1911 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498645|gb|ABB45185.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 225

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 32/240 (13%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL--SKISYVG-KSIR 66
           +++      +       + Y YL  V R KEGD +     ++ E+L   KI+ +  +S  
Sbjct: 4   IYILDDEAGRKTLHVRAELYKYLIKVRRHKEGDILHFRTRENLEFLHAYKITLLEPRSAE 63

Query: 67  FKVEYQSRSQTKQS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
             +     ++ K S ++   +  I ++ ++ ++    E+G+ AI  +    +Q  ++ +D
Sbjct: 64  LTLISSETNELKSSKNLHIGWCIIDSSAIEKVLPALCEIGVEAITFISCERSQK-NFKLD 122

Query: 126 --RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R      ++ +QC   +        +++  +  +       F D      N L     
Sbjct: 123 FKRFERIQEASMQQCGRSSYIEFNTCKSVKEFITKYPDTKVFDFCD------NVLNDYSD 176

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLG------PRILRSDTAAVAAMALV 237
           I       +LIG EGG+   E+E           SLG      P +LRS++A +A  + +
Sbjct: 177 IK-----TVLIGCEGGFSPNERELFK--------SLGSFRLDTPMVLRSESAVLAVASRI 223


>gi|15645002|ref|NP_207172.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           26695]
 gi|6226368|sp|O25138|RSME_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|2313478|gb|AAD07443.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 226

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  +            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  +  LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+   E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|317009689|gb|ADU80269.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           India7]
          Length = 226

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQPLEIMANKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I++ EQC    L  +   +  + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILINSCEQCGRSALMELEAFSNTKEMLNAYPKASVLDFKGETLPTSVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+   E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|297380257|gb|ADI35144.1| conserved hypothetical protein [Helicobacter pylori v225d]
          Length = 226

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+        +  I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMASKKMHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  +  L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALNAYPKASVLDFKGETLPASVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQERECFKERE-IYRIPL-DMVLKSESACVFMASVAQV 226


>gi|224370617|ref|YP_002604781.1| 16S ribosomal RNA methyltransferase RsmE [Desulfobacterium
           autotrophicum HRM2]
 gi|223693334|gb|ACN16617.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 236

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 12/222 (5%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQ 72
                ++ + SG ++ ++  V R + GD     + NG+ G     I+ +           
Sbjct: 10  DFTAPSRVEISGRRFDHIQKVHRAEVGDEFTTGMVNGRMG--TGTITAITPGRVEMTVTL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRV 127
            +      D+  + +  +   L  ++Q    +G+  +  + +   +   ++      +++
Sbjct: 68  DQPPPPALDMTLVMALPRPKMLKRILQTVAGLGVKQLYLINSWRVEKGFWSAPVLEKEQI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
               I   EQ     +P ++        ++  D    I        +      +      
Sbjct: 128 NQALILGLEQAKDTIMPQVFLRRLFTPFIR--DELDTIAGDTLRLTAHPGGRAVCPCHPQ 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            +V + +GPEGG+   E +T   L F T ++LGPRILR +TA
Sbjct: 186 KSVTLAVGPEGGFIQREVDTFEQLGF-TSVTLGPRILRVETA 226


>gi|83643944|ref|YP_432379.1| 16S ribosomal RNA methyltransferase RsmE [Hahella chejuensis KCTC
           2396]
 gi|83631987|gb|ABC27954.1| uncharacterized protein conserved in bacteria [Hahella chejuensis
           KCTC 2396]
          Length = 235

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 13/226 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRF 67
           LF    L    Q   +  +  +L  VL+ + GD+I +   NG+ G   +++  +      
Sbjct: 5   LFSAEELSASGQLTLTDRRAEHLRKVLKAQAGDDIRVGQINGEMG--TARLLDINDERAR 62

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--- 124
                +       D+  I +  +   +  +IQ +V +G+  I  + +   + +++     
Sbjct: 63  LEVNLNVEAPPPLDLTLILALPRPKMMRRVIQSTVSLGVKRIYLINSYKVEKSYWQTPWL 122

Query: 125 --DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
               +R   +   EQ     LP I+     +  +++       + A       +   +  
Sbjct: 123 EASSLRENVLLGLEQGVDTLLPEIHMRKLFKPFVED---ELPGIIAGSDAWVAHPTSEAQ 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           +      + + +GPEGG+   E + L  + F    +LG RILR +T
Sbjct: 180 SPQVNGPLTLAVGPEGGFTPYEVKKLEEIGF-KGFTLGKRILRVET 224


>gi|317178616|dbj|BAJ56404.1| hypothetical protein HPF30_0307 [Helicobacter pylori F30]
          Length = 226

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPILKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMASKKTHLILSVIEIKNVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKIK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      +  LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEALKAYPKASVLDFKGETLPASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|254779634|ref|YP_003057740.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori B38]
 gi|254001546|emb|CAX29564.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 226

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 33/242 (13%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPTLKIEGESYIHLYRSRRIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ-KSVE--------MGMGAIRPVITRYTQNT 120
              +R     +  +             +I+ KSVE        +G+  +      ++Q  
Sbjct: 63  LVGARLLEVMASKKTHLILS-------VIEIKSVEKILPFLNQLGVSKLSLFYADFSQRN 115

Query: 121 HY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
                  ++R +   I + EQC    L  +      +  LK +     + F  ET  +  
Sbjct: 116 EKIDSAKLERFQKILIHSCEQCGRSALMELEAFPNTKEALKAYPKASVLDFKGETLPTSM 175

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
             EK           ++IGPEGG+  +E+        +  + L   +L+S++A V   ++
Sbjct: 176 DFEK----------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASI 223

Query: 237 VQ 238
            Q
Sbjct: 224 AQ 225


>gi|317182333|dbj|BAJ60117.1| hypothetical protein HPF57_1043 [Helicobacter pylori F57]
          Length = 226

 Score =  106 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVVASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|118475053|ref|YP_891431.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414279|gb|ABK82699.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 217

 Score =  106 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           F+          +  GD +++L    R   GD I + N KDG  ++ +I    +    ++
Sbjct: 3   FLYDENAKNEILEIKGDSFNHL-KARRQNVGDRIDIRNLKDGYSYIYEIIKFERKATCEL 61

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVR 128
            ++S +++  SD+   ++ +  + ++  +    E+G+  I  V T ++Q     + DR R
Sbjct: 62  VFKSLTKSLDSDLVLAWAVVDPSVIEKTLPSLNELGVKKIIFVYTDFSQRNIKLDFDRFR 121

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              I +++QC   ++        ++  LK   +   I F  ++  + N  E L       
Sbjct: 122 RILIGSSQQCGRNSIIEFEIFADIDEFLKVHKNVSLIDFGGDSLDNANGSEVL------- 174

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                +G EGG+ ++E+    +   +      P IL+S+TA ++  +
Sbjct: 175 ----FVGSEGGFSAQERVKFLNRYCLKC----PNILKSNTAIISVAS 213


>gi|283955406|ref|ZP_06372905.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793166|gb|EFC31936.1| hypothetical protein C414_000450088 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 218

 Score =  106 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 23/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64
           ++  F+      +   +  G+ + +L    R+KE   + L N +D   +   I+ + + S
Sbjct: 1   MQ--FLYNKQAGEELIQLQGESFKHL-KARRVKENSELNLRNLQDNFLYSYIITNLTRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
              K   +     KQS++    + I    L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CTLKFLDKKSQSIKQSELNLALAIIDIKVLEKTLSFLNELGVKKLHLVFTNFSQRNFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R     IS+ EQC   T        + +  ++ + +   + F  E     N  E    
Sbjct: 118 LERFEKIIISSCEQCGRNTKMDFIIHQSTQEFVQKFPNAIMVDFQGEKQSHFNEKE---- 173

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                     IGPEGG+ + E+       F   +SL    IL+S TA +A  +
Sbjct: 174 -------LYFIGPEGGFSNNERLL-----FNQKISLKSSNILKSQTAIIAIAS 214


>gi|86151272|ref|ZP_01069487.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|86153813|ref|ZP_01072016.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|121613031|ref|YP_999881.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167004847|ref|ZP_02270605.1| hypothetical protein Cjejjejuni_00900 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315123761|ref|YP_004065765.1| hypothetical protein ICDCCJ07001_153 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841619|gb|EAQ58866.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842774|gb|EAQ59986.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250118|gb|EAQ73076.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|315017483|gb|ADT65576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 218

 Score =  106 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 23/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64
           ++  F+      +   +  G+ +++L  V R+KE   + L N +D   +   I+ + + S
Sbjct: 1   MQ--FLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
              K   +     KQS++    + I    L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R     IS+ EQC   T   +    + +  ++ + +   + F  +     +  E    
Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFIQKFPNAIMVDFQGKQQSHFDEKE---- 173

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                     IGPEGG++++E+       F   +SL    IL+S TA +A  +
Sbjct: 174 -------LYFIGPEGGFNNDERLL-----FNRKISLKSSNILKSQTAIIAIAS 214


>gi|308062356|gb|ADO04244.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Cuz20]
          Length = 226

 Score =  106 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEMLKAYPKASVLDFKGETLPASVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEQERGYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|308183185|ref|YP_003927312.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           PeCan4]
 gi|308065370|gb|ADO07262.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           PeCan4]
          Length = 226

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQTLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +LK +     + F  ET       EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLKAYPKASVLDFKGETLPVSVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEQERGCFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|94263522|ref|ZP_01287333.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456055|gb|EAT06202.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 240

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 21/240 (8%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRF 67
           + V+      ++   +  +  ++  +LR + GD++ L   +G  G+ L  I  + +    
Sbjct: 4   ILVEPDEIKDSRVILTDHRARHIRKILRRQVGDSLRLGIVDGPLGQGL--IKNLERDSVL 61

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--- 124
                +     +   + I +  +   L  ++ ++  MG+G I  +     + + +     
Sbjct: 62  LELCCTTPPPAKIATELILALPRPIMLKRVLAQATAMGVGRIMLINAGRVEKSFWQSSQL 121

Query: 125 --DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGSEN 176
               ++       EQ     LP +         +++       D+  +++       +  
Sbjct: 122 ADQHLQAALRQGLEQAGDTRLPRLSLHRRFRPFIEDELAPLAGDYPRRLLAHPLPTATLP 181

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           S       A      + IGPEGG+   E        F    SLG RILR DTA  A +A 
Sbjct: 182 S-----EPAPSGRQLLAIGPEGGWLDFEVAAFRDQGF-QFFSLGSRILRVDTAVPALLAA 235


>gi|182412505|ref|YP_001817571.1| hypothetical protein Oter_0682 [Opitutus terrae PB90-1]
 gi|177839719|gb|ACB73971.1| protein of unknown function DUF558 [Opitutus terrae PB90-1]
          Length = 247

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 39/248 (15%)

Query: 12  VDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNG----------KDGEWLSKIS 59
           ++ PL           +  ++  VL    GD     + NG           DG++  +  
Sbjct: 20  INRPLAAG------DPRVRHVLAVLHRAAGDAFDAGIINGPRGKARLRPRADGDYDCEF- 72

Query: 60  YVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR---- 115
                        +      + +  +    +      +++ +  +G+ A+  V T     
Sbjct: 73  -----------TPTAEPPPAAPIALVIGLPRPQTARDILRDATTLGVQALHFVATEKGDP 121

Query: 116 -YTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
            Y  +  +     R + +  AEQ     LP +    +L  ++            D    +
Sbjct: 122 NYASSALWRSGEWRRHVVIGAEQAFCTRLPEVTHGRSLAEVVAALMPGEARFALDNYEAA 181

Query: 175 ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +       +    P V + IG E G+ + E+  L    F T   LG R+LR++TA +AA+
Sbjct: 182 QPLA---RSEIDAPRVTLAIGAERGWSTPERALLRHHGF-TFAHLGERVLRTETACIAAI 237

Query: 235 ALVQAICG 242
            LV+A  G
Sbjct: 238 TLVRAALG 245


>gi|261839813|gb|ACX99578.1| hypothetical protein HPKB_1009 [Helicobacter pylori 52]
          Length = 226

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  +            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGGRKLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEVLKAYPKASVLDFKGETLPASVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                   ++IGPEGG+   E+E       +  + L   +L+S++A V   ++ Q
Sbjct: 180 -------GVIIGPEGGFSEPEREYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225


>gi|217034479|ref|ZP_03439891.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10]
 gi|216943081|gb|EEC22558.1| hypothetical protein HP9810_890g24 [Helicobacter pylori 98-10]
          Length = 226

 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKIK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC   TL  +      +  LK +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSTLMELEVFLNTKEALKAYPKASVLDFKGETLPASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+        +  + L   +L+S+ A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQERGYFKERE-IYRIPL-DMVLKSENACVFVASVAQV 226


>gi|115374869|ref|ZP_01462142.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368087|gb|EAU67049.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 265

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           D         + +G +  +   VLR + G+ + +          ++    + +     + 
Sbjct: 25  DEDFLPDGTARLTGRRAQHAREVLRAEPGERLRVGRLGGLVGTGEVLENSEGVLRLSAHL 84

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RV 127
           + +   ++ V  + +  +   L  ++     +G+  +  V     + ++++        +
Sbjct: 85  TEAPPPRAGVDLLLAIPRPKALKKVLPAVASLGVDRVVLVNAARVEKSYFDSKVLAAGSI 144

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IA 185
           +   +   EQ     LP +         +++         A        + + L A  + 
Sbjct: 145 QELLLQGLEQARDTRLPEVLVRERFRPFVEDELDAVLGAQALRLLPHPPARQPLTATRVG 204

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             P V + IGP+GG+   E   L +  F  P +LGPRILR +TA    +  V  +
Sbjct: 205 TAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETAVPVLLGQVALL 258


>gi|254445599|ref|ZP_05059075.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae
           bacterium DG1235]
 gi|198259907|gb|EDY84215.1| conserved hypothetical protein TIGR00046 [Verrucomicrobiae
           bacterium DG1235]
          Length = 248

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRF 67
           LF    +          ++ +++  VLR   GD       +G  G   +++  +      
Sbjct: 12  LFEACEVEAGGSLSMDDERANHVVKVLRRGVGDTFDAGMIDGPKG--KARVLGISDEGIE 69

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHY 122
                   + +   +  I    +   +  ++ ++  +G+ +IR V+T   +     +  +
Sbjct: 70  LGFEWGVEEPELLAIDLIVGLSRPQTMRKILNEATTLGVRSIRFVVTDRGEPSYAGSKLW 129

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
           +    R + ++   Q     +P +    +LE  ++      + +  D   G     E   
Sbjct: 130 STGEWRRHVVAGVAQAFTTRMPEVSWGMSLEEAMEAVGDVSERLCLDNYEGLMRLGEVRG 189

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
               +P VA+ IG E G+   E++   +  + T + +G R+LR++T
Sbjct: 190 GARTLP-VALTIGSERGWTCRERDLFRARGW-TLVGMGERVLRTET 233


>gi|261838413|gb|ACX98179.1| hypothetical protein KHP_0982 [Helicobacter pylori 51]
          Length = 226

 Score =  104 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQERGYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|306836633|ref|ZP_07469599.1| RsmE family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304567463|gb|EFM43062.1| RsmE family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 247

 Score =  104 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 34/237 (14%)

Query: 11  FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65
           F+   L           SG +  +   V RM++G+ + L +G        ++       +
Sbjct: 6   FIHPDLSAAQAGDAITLSGPEARHAVTVKRMQQGEKLALIDGTGIRLTLTVTETSGKDHL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              VE  ++       V  + +  K+ R +  +  + + G   I              + 
Sbjct: 66  TGTVESVTQLPEPNPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGS- 174
               + + +    +AA+Q     +P +  P T    +  L +  +    +V  +E   S 
Sbjct: 126 APKAITKWQAAAEAAAKQSRRDRIPQVRGPLTTRQLVAELAERAESASVLVLHEEATESI 185

Query: 175 -----ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                   +  L           L             TL     V  + LGP +LR+
Sbjct: 186 REVGLHGEVFLLVGPEGGIGEEEL------------TTLREAGAV-AIKLGPEVLRT 229


>gi|329894524|ref|ZP_08270338.1| Protein of unknown function (DUF558) family [gamma proteobacterium
           IMCC3088]
 gi|328923049|gb|EGG30374.1| Protein of unknown function (DUF558) family [gamma proteobacterium
           IMCC3088]
          Length = 238

 Score =  104 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 15/228 (6%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK-ISYVGKSIRFKVEYQSRSQTKQ 79
           + + +   + +   VLR + G ++ +        L   I +        V    R  +K+
Sbjct: 16  EAQLNPSAHRHCIEVLRPQVGHSLKVGVYGGKLGLGTVIEHTETRTVLDVTLSERPPSKE 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTISA 134
             +  + +  +   L  ++  S+E+G+ AI  + +   + +++       D V    ++A
Sbjct: 76  P-ICLVLALPRPKMLRRILSASIELGVEAIHIINSYRVEKSYWQSPYLKPDAVDRTILTA 134

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            EQ      P +      +   ++        + +   G       L+         I I
Sbjct: 135 LEQAGDTVPPSLRWHKGFKPFAEDILPGLARSYPNAWLGDHRVQSSLNTNRSDEPRLIAI 194

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           GPEGG+   E + L     +TP++LG RI+R +TA       V A+ G
Sbjct: 195 GPEGGFIPYEIDLLQKAG-LTPVNLGARIMRVETA-------VSALLG 234


>gi|310820109|ref|YP_003952467.1| hypothetical protein STAUR_2848 [Stigmatella aurantiaca DW4/3-1]
 gi|309393181|gb|ADO70640.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 248

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           D         + +G +  +   VLR + G+ + +          ++    + +     + 
Sbjct: 8   DEDFLPDGTARLTGRRAQHAREVLRAEPGERLRVGRLGGLVGTGEVLENSEGVLRLSAHL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-----RV 127
           + +   ++ V  + +  +   L  ++     +G+  +  V     + ++++        +
Sbjct: 68  TEAPPPRAGVDLLLAIPRPKALKKVLPAVASLGVDRVVLVNAARVEKSYFDSKVLAAGSI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA--IA 185
           +   +   EQ     LP +         +++         A        + + L A  + 
Sbjct: 128 QELLLQGLEQARDTRLPEVLVRERFRPFVEDELDAVLGAQALRLLPHPPARQPLTATRVG 187

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             P V + IGP+GG+   E   L +  F  P +LGPRILR +TA    +  V  +
Sbjct: 188 TAPRVVLAIGPDGGWVPFEAALLEAHGF-QPFTLGPRILRVETAVPVLLGQVALL 241


>gi|308063864|gb|ADO05751.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Sat464]
          Length = 226

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 23/238 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  ---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--- 122
              V+      +K++ +      IK+  ++ ++    ++G+  +      ++Q       
Sbjct: 63  LVGVQALEVMASKKTHLILSVIEIKS--IEKILPFLNQLGVSKLSLFYADFSQRNEKIDS 120

Query: 123 -NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK 
Sbjct: 121 AKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEK- 179

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                     ++IGPEGG+  +E+        +  + L   +L+S++A V   ++VQ 
Sbjct: 180 ---------GVIIGPEGGFSGQERGCFKERE-IYRIPL-DMVLKSESACVFVASVVQV 226


>gi|330837538|ref|YP_004412179.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
 gi|329749441|gb|AEC02797.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta
           coccoides DSM 17374]
          Length = 241

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 91/238 (38%), Gaps = 18/238 (7%)

Query: 17  CIKTQGKASGDQYH--YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKS-IRF--KV 69
            +          +   ++ HVLR+ EGD+    + NG  G   +KI  + +S IRF    
Sbjct: 8   NLDADSFLPASDFRYGHIIHVLRLHEGDSFSAGIVNGASG--HAKIESLDESGIRFSWTQ 65

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-- 127
           E +      Q  V  + + ++   +  +++ +  +G+  +        + ++        
Sbjct: 66  EKEGDEARGQVPVTLLVAQVRPICMKRILRDAAMLGVSRLIVSGADTAEKSYQAAGLWSD 125

Query: 128 ---RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
                Y +  A Q      P  +   ++    +    +      D T   EN+       
Sbjct: 126 GEYMKYLLDGAMQAVGTGFPEFFLTPSVNHAARLLSPHAAHFLLDNT---ENAPLFSAGD 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           A      + IGPE G+   E++      F +  SLG R+LR++TA V A+A+     G
Sbjct: 183 AITKACTVAIGPERGWSDRERQFFLESGF-SVFSLGGRVLRTETACVVAVAMAMHRLG 239


>gi|92113035|ref|YP_572963.1| hypothetical protein Csal_0907 [Chromohalobacter salexigens DSM
           3043]
 gi|91796125|gb|ABE58264.1| protein of unknown function DUF558 [Chromohalobacter salexigens DSM
           3043]
          Length = 236

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 86/234 (36%), Gaps = 9/234 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQY-HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68
           LF D         + S  +   +L  V R + GD + +          ++  +  +    
Sbjct: 5   LFDDRDRLDTRHVRLSDPERLRHLRDVQRAEPGDELSVGLLGGRWGRGRLLSLDAAGAVF 64

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYN 123
             +  R       V  + +  +   L   ++    +G+  +  + TR  + +        
Sbjct: 65  EIHLDRDPPAPLPVHLLLALPRPRMLARTLEHVTALGVKRLTLLHTRRVEKSYWQSPELR 124

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            +++R + +   EQ     LP +      +  +++       +       +   + +   
Sbjct: 125 PEKIRHHLLLGLEQARDTQLPHLDFEPRFKPFIEDRLPGQ--LAGRRALIAHPGMAETCP 182

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                 V + +GPEGG+   E E L +L F T + LG RILR +TA  A +A +
Sbjct: 183 RGLAEPVTLAVGPEGGFIPYEVERLQALGF-TGVHLGERILRVETAVTALLARL 235


>gi|220918289|ref|YP_002493593.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956143|gb|ACL66527.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 247

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 24/242 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70
              L      + +G +  ++  VLR   GD I   +  G+ GE  ++I            
Sbjct: 8   PGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGE--AEILTATPDEVVIAA 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMD 125
              R     S V  + +  +   L  ++Q +  MG+  +  + +   + +         D
Sbjct: 66  SPDREPPPPSPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPD 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEK 180
            +R   +   EQ     LP +      +  +++     +    +++          +   
Sbjct: 126 AIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHP-----AGAAPL 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQA 239
                  P  A+ IGPEGG+   E   L    F  P +LGPR+LR D AAV  A+   QA
Sbjct: 181 EALAPAGPRAALAIGPEGGWTPYEAAALRDRGFA-PFTLGPRVLRVD-AAVPYAVG--QA 236

Query: 240 IC 241
             
Sbjct: 237 EL 238


>gi|325970602|ref|YP_004246793.1| ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
 gi|324025840|gb|ADY12599.1| Ribosomal RNA small subunit methyltransferase E [Spirochaeta sp.
           Buddy]
          Length = 239

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 94/238 (39%), Gaps = 16/238 (6%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGK-SIRFKV 69
             L  + +      +  ++  +LR+KEG++    ++  GK     + ++ + K  I F+ 
Sbjct: 7   EALSAQNELPMQDPRAQHICKILRLKEGESFQAGIINVGKG---TATLTALEKERITFRF 63

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124
             +     K   V  + S ++   +  ++++SV +G+  I    T   + ++        
Sbjct: 64  VLEETESAKLYPVTLLVSQVRPICMRRILRESVSLGVERIILCTTETGEKSYAQATLYTS 123

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
               +  +  A Q     +  +    ++   +   + + Q +  D    S +        
Sbjct: 124 GEYHSILLDGAMQSGKCGVSAVQFAPSVASAMHLLEQDSQRIVLDNVRESTSLARY---A 180

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            H  +V + IG E G+   E+       F    SLG RILR++TA  A +A++    G
Sbjct: 181 LHASSVVLAIGGERGFTDNERTLFDLNGFSFA-SLGSRILRTETACSAGLAVLLGRMG 237


>gi|108563443|ref|YP_627759.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           HPAG1]
 gi|107837216|gb|ABF85085.1| hypothetical protein HPAG1_1018 [Helicobacter pylori HPAG1]
          Length = 226

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASVLDLRNLKDGFLYTYEHAEITKKHALLK 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  +            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  + +LK +     + F  ET       EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEVLKAYPKASVLDFKGETLPISVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+   E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQV 226


>gi|90415836|ref|ZP_01223769.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium
           HTCC2207]
 gi|90332210|gb|EAS47407.1| hypothetical protein GB2207_01347 [marine gamma proteobacterium
           HTCC2207]
          Length = 236

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 12/235 (5%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRF 67
           L +      +     SG Q+ +L  V R + GD++   + +G  G     I  +G     
Sbjct: 4   LLLKPDQITQQSATVSGRQFDHLLTVQRAQVGDSVRIGVIDGPMG--QGIIKALGSEQAT 61

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---- 123
                         ++ I +  +   L   +Q    MG+  I  V +   + + +     
Sbjct: 62  LEITLDSPPPPAIPLRLILALPRPKMLRRTLQSITAMGVKEIYLVNSSRVEKSFWQSPFL 121

Query: 124 -MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
             + +    I   EQ     +P ++     +  ++  D    I    +   +    E   
Sbjct: 122 QPEALEEQMILGLEQARDTQMPNLHLRKRFKPFVE--DELGNIAKGSQALVAHPVTEVPC 179

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            I     V + IGPEGG+   E E L S+ F   + LGPRILR + A  A ++ +
Sbjct: 180 PINCDSAVTLAIGPEGGFIPYEIELLSSIGF-QSVHLGPRILRVEVAVPALISRL 233


>gi|210135240|ref|YP_002301679.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori P12]
 gi|210133208|gb|ACJ08199.1| hypothetical protein HPP12_1047 [Helicobacter pylori P12]
          Length = 226

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  +            I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGGRKLEVMASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFSQRNEKIDSTK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+   E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSEPERECFKERE-IYRIPL-DMVLKSESACVFMASIAQV 226


>gi|109947089|ref|YP_664317.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter acinonychis
           str. Sheeba]
 gi|109714310|emb|CAJ99318.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 226

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSK-ISYVGKSIRFK 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KD   +  + +    K    +
Sbjct: 3   FVYHPLAKEPTLKIEGESYTHLYRSRRIKSASGLDLRNLKDSFLYTYEHVEITKKHALLR 62

Query: 69  VEYQSRSQTKQSD-VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
           +  Q   +   S     I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGQKELEIMASKKTHLILSVIEVKSIEKILPFLNQLGVNKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I++ EQC    L  +   +  + +LK +   C + F  +   +  S EK   
Sbjct: 123 LERFQKILINSCEQCGRGALMELEVFSNTKEMLKAYPKACVLDFNGKMLQTNFSAEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +EK        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSKQEKGQFKERE-IYRIPL-DMVLKSESACVFVASITQV 226


>gi|291548149|emb|CBL21257.1| RNA methyltransferase, RsmE family [Ruminococcus sp. SR1/5]
          Length = 95

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLP 212
           E L+   + +  ++  +   G + + E + +I    ++ + IGPEGG+  +E        
Sbjct: 5   EALVYAKELDVLLIPYELAKGMKETKELIRSIEPGKSIGVFIGPEGGFEEQEVADAMEAG 64

Query: 213 FVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              P++LG RILR++TA +A ++++     D
Sbjct: 65  -AKPITLGHRILRTETAGLAVLSVLMFQLED 94


>gi|332673881|gb|AEE70698.1| RsmE family RNA methyltransferase [Helicobacter pylori 83]
          Length = 226

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L     +K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRHIKSTSRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGTQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEVLNAYPKASVLDFKGETLPTSVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|317177831|dbj|BAJ55620.1| hypothetical protein HPF16_1023 [Helicobacter pylori F16]
          Length = 226

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMSSKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDKIK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFLNTKEMLNAYPKASVLDFKGETLSASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQERGYFKECE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|71029718|ref|XP_764502.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351456|gb|EAN32219.1| hypothetical protein TP04_0865 [Theileria parva]
          Length = 295

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 98/235 (41%), Gaps = 19/235 (8%)

Query: 23  KASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTK- 78
               +  ++L +VL++  G    + + N    ++   +  + K SI+ K+    R     
Sbjct: 54  IIDKNTVNHLLNVLKVHVGKLLKVGILN-STLDY-GVVESITKWSIKLKLSENFRLFPPV 111

Query: 79  --QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYT 131
             +  V  +    +   LD ++Q S  +G+G I  + +   + +       + + +    
Sbjct: 112 IEKPVVDLVVGIPRPKSLDKLLQYSASIGVGNIDLICSSRVEKSYLASHKLSKESINKSL 171

Query: 132 ISAAEQCDILTLPFIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           I   +Q     +P +    ++   E   K  D+  +++   ++  +  SL KL+     P
Sbjct: 172 ILGLQQGVCTLMPEVNMYLSMGEYERACKQKDYAMKLIAHPDSEETLGSL-KLNTHVKGP 230

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
            + + IGPEGG+   E      L FV    L  RILR++ AA A ++ +  +  D
Sbjct: 231 -ILVAIGPEGGWLDHELTYYKKLGFVQF-KLTDRILRTEVAAAAILSQMSLLLND 283


>gi|153951044|ref|YP_001397414.1| hypothetical protein JJD26997_0171 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938490|gb|ABS43231.1| conserved hypothetical protein TIGR00046 [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 218

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 23/233 (9%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGK-S 64
           ++  F+      +   +  G+ +++L    R++E   + L N +D   +   I+ + + S
Sbjct: 1   MQ--FLYNKQAGEEFIQLQGENFNHL-KARRVRENSELNLRNLQDNFLYSYTITDLTRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
              K   +     +QS +    + I    L+  +    E+G+  +  V T ++Q     +
Sbjct: 58  CTLKFLNKKLQNIEQSKLNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R     IS+ EQC   T   +    + +  ++ +     + F  E     +  E    
Sbjct: 118 LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPDAIMVDFQGEQQSHFDEKE---- 173

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                     IGPEGG++++E      L F   +SL    IL+S TA +A  +
Sbjct: 174 -------LYFIGPEGGFNNDE-----KLLFNRKISLKNSNILKSQTAIIAIAS 214


>gi|331082511|ref|ZP_08331636.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400489|gb|EGG80119.1| hypothetical protein HMPREF0992_00560 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 95

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 150 TTLEFLLKNWDHNCQIVFADE-TCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208
            + +  +        ++F  E   G + + E +  I    +V I IGPEGG+   E    
Sbjct: 1   MSFQQAVDYAGKLDIVLFPYELADGMKKTKEIIGKIKPGQSVGIFIGPEGGFEESEVALA 60

Query: 209 HSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                   ++LG RILR++TA +  +A++    
Sbjct: 61  KEKADAQVITLGKRILRTETAGLTVLAILMYTL 93


>gi|329728385|gb|EGG64822.1| RNA methyltransferase, RsmE domain protein [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 106

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEG 198
           +P I   + L+ +    D+   I+ A E    +  L    + L        V ++ GPEG
Sbjct: 2   IPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFNAQDKVLMIFGPEG 61

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
           G    E     +    T + LGPRILR++TA + A++ +   
Sbjct: 62  GLSENEISLFSNTS--TVVGLGPRILRAETAPLYALSAISYE 101


>gi|90021867|ref|YP_527694.1| 16S ribosomal RNA methyltransferase RsmE [Saccharophagus degradans
           2-40]
 gi|89951467|gb|ABD81482.1| protein of unknown function DUF558 [Saccharophagus degradans 2-40]
          Length = 245

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 100/252 (39%), Gaps = 28/252 (11%)

Query: 1   MKIH----SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEW 54
           M+ H    S +  L +D      ++   +G+++ ++  VL++++GD + +   NG  G  
Sbjct: 1   MQAHNYAPSRMNLLLLDNA-ENDSRAVVTGERHQHIRKVLKLQQGDTLRVGIINGPVG-- 57

Query: 55  LSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK-SVEMGMGAIRPVI 113
           ++ ++    +        +   +    +  I +  +   +  ++Q  +  MG+  +  + 
Sbjct: 58  IATVAEQSDTSTTLQLSINSPASPPLPLTLILALPRPQMIKRILQTIAT-MGVHELHLIQ 116

Query: 114 TRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNC 163
           T   + + +         +R       EQ     LP ++         ++        N 
Sbjct: 117 TGKVEKSFWQSPAVTDQAIREQLTLGLEQGVATHLPTVHKHMRFRPFAEDVLPSITPTNK 176

Query: 164 QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223
           +++       S  SL+   A        ++IGPEGG+   E E   +  +  P+ LG R+
Sbjct: 177 KLIAHLGDYPSCPSLQPKEAC------TMVIGPEGGFTEREVENFVNNGY-QPVQLGARV 229

Query: 224 LRSDTAAVAAMA 235
           L+ +TA    ++
Sbjct: 230 LKVETAVPVIIS 241


>gi|218678184|ref|ZP_03526081.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894]
          Length = 105

 Score =  101 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1  MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
          M+ +  ++RLFVD PL      +AS DQ++YLA+VLRM+ G  ILLFNG+DGEW + +++
Sbjct: 1  MRANFRMQRLFVDAPLSAGAALEASADQFNYLANVLRMEAGAEILLFNGRDGEWKATLTF 60

Query: 61 -VGKSIRFKVEYQSRSQTKQSDVQYIF 86
             K I+     ++R Q   +      
Sbjct: 61 PTRKRIQLTATEETRPQPTPAICITCL 87


>gi|108757437|ref|YP_630256.1| 16S ribosomal RNA methyltransferase RsmE [Myxococcus xanthus DK
           1622]
 gi|108461317|gb|ABF86502.1| conserved hypothetical protein TIGR00046 [Myxococcus xanthus DK
           1622]
          Length = 254

 Score =  101 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 87/242 (35%), Gaps = 16/242 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           D         + +G +  +   VLR + G+++ + +        ++      +       
Sbjct: 8   DEDFLPDGTARLTGRRAQHAREVLRAEPGESLRVGHLGGLTGTGEVLENSAGVLHLRVTL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV----- 127
           +     ++ +  + +  +   L  ++     +G+  I  +     + ++++   +     
Sbjct: 68  TEPPPPRAGIDLLLAIPRPKALKKVLPAVASLGVDRIVLLNAARVEKSYFDSKVLDPAFV 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGSENSLEKL 181
               I   EQ     LP +         +++           +++       S  +L   
Sbjct: 128 HELLIQGLEQARDTRLPEVLVRERFRPFVEDELDAFFGPQTLRLLPHPPARQSLRAL--- 184

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             +     V + IGP+GG+   E + L +  F  P SLGPRILR +TA  A +  V  + 
Sbjct: 185 -GVGLAQRVVLAIGPDGGWVPFEADLLEAHGF-HPFSLGPRILRVETAVPALLGQVALLR 242

Query: 242 GD 243
            D
Sbjct: 243 ED 244


>gi|188527861|ref|YP_001910548.1| 16S ribosomal RNA methyltransferase RsmE [Helicobacter pylori
           Shi470]
 gi|188144101|gb|ACD48518.1| hypothetical protein HPSH_05545 [Helicobacter pylori Shi470]
          Length = 226

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 23/238 (9%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  ---VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY--- 122
              V+      +K++ +      IK+  ++ ++    ++G+  +      ++Q       
Sbjct: 63  LVGVQALEVMASKKTHLILSVIEIKS--VEKILPFLNQLGVSKLSLFYADFSQRNEKIDS 120

Query: 123 -NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
             ++R +   I + EQC    L  +      + +L  +     + F  ET  +    EK 
Sbjct: 121 AKLERFQKILIHSCEQCGRSALMELEVFPNTKEVLNAYPKASVLDFKGETLPASVGFEK- 179

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                     ++IGPEGG+  +E+        +  + L   +L+S++A V   ++ Q 
Sbjct: 180 ---------GVIIGPEGGFSGQERGCFKERE-IYRIPL-DMVLKSESACVFVASVAQV 226


>gi|315586970|gb|ADU41351.1| RsmE family RNA methyltransferase [Helicobacter pylori 35A]
          Length = 226

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFK- 68
           FV  PL  +   K  G+ Y +L    R+K    + L N KDG  +  + + + K      
Sbjct: 3   FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLR 62

Query: 69  -VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----N 123
            V  Q+           I S I+   ++ ++    ++G+  +      ++Q         
Sbjct: 63  LVGAQALEVMASKKTHLILSVIEIKSVEKILPFLNQLGVSKLSLFYADFSQRNEKIDSAK 122

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++R +   I + EQC    L  +   +  + +L  +     + F  ET  +    EK   
Sbjct: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEVLNAYPKASVLDFKGETLPASVDFEK--- 179

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
                   ++IGPEGG+  +E+E       +  + L   +L+S++  V   ++ Q 
Sbjct: 180 -------GVIIGPEGGFSGQEREYFKERE-IYRIPL-DMVLKSESVCVFVASVAQV 226


>gi|330501467|ref|YP_004378336.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
 gi|328915753|gb|AEB56584.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas mendocina
           NK-01]
          Length = 236

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 7/230 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           D       + + +G +  +L  V R + GD + +          ++  +           
Sbjct: 8   DADFVGVDRVRLTGRRLKHLHEVHRAEAGDLLRVGRLGGMMGEGRLIALDAGQAELQVNL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRV 127
            +    +  +  I +  +   L  ++Q    MG+  +  V +   + + +       + +
Sbjct: 68  DQPPPAKLPLTLILALPRPKMLKRVLQTVSAMGVPRLVLVNSYRVEKSFWQTPFLKAEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++            T    +      A+   
Sbjct: 128 REQLILGLEQARDTVLPEVSIEKRFKPFVEDRLPALAAGTLGLTGHPGDHPACPRAVQEP 187

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             V + IGPEGG+   E E L     + P+ LG RILR +TA  A +A +
Sbjct: 188 --VTLAIGPEGGWTPYEVELLREAAGLQPVQLGERILRVETAVPALLARL 235


>gi|57505792|ref|ZP_00371717.1| conserved hypothetical protein TIGR00046 [Campylobacter upsaliensis
           RM3195]
 gi|57015822|gb|EAL52611.1| conserved hypothetical protein TIGR00046 [Campylobacter upsaliensis
           RM3195]
          Length = 217

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 24/233 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-S 64
           ++ L+        +      +++ +L  V R+KEG+++ L N   D  +  +IS + + S
Sbjct: 1   MQFLYHKE--AKNSSIFLEKEEFLHL-KVRRVKEGESLNLRNLQDDFLYTYRISDLKRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-HYN 123
               +  Q  + T +S V      I+   ++ ++    EMG+  +  V   ++Q     +
Sbjct: 58  CVLSLISQEENLTFKSGVNLALGVIEPKIVEKILPFFNEMGLEKLILVYCEFSQKKFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+    I++ +QC    L  I     ++  L  +     + F  E    +        
Sbjct: 118 KKRLEKILINSCQQCGRGDLMRIEIYENVDSFLAIYPKVVLVDFEGEKKEFD-------- 169

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                +    +G EGG+   E+  +        + L  P IL+S +AA+  ++
Sbjct: 170 ----KDTLYFVGAEGGFSESERRRIKDK-----IVLNSPFILKSQSAALGVLS 213


>gi|157164135|ref|YP_001466041.1| hypothetical protein CCC13826_1151 [Campylobacter concisus 13826]
 gi|112801233|gb|EAT98577.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 218

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 27/232 (11%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-SIRFK 68
           F+      + + K   + + +L    R++ G+ I + N     E++ +I  + + S    
Sbjct: 3   FLYDKNAGEERLKIVNEAFLHL-KARRVEAGERISVRNLYDGKEYIYEIDEIERRSANLS 61

Query: 69  VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMGMGAIRPVITRYTQ-NTHYN 123
           + + S +   + D    ++ +        I+K++    E+G+G I  V T+++Q N   +
Sbjct: 62  LVFASLNCEHKFDFTIAWAVVDPK----TIEKALPFLNELGVGKIAFVYTKFSQANFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
           ++++      + EQC   +L        L+ L+  + +   I F     G +N  EK   
Sbjct: 118 LEKLNYINALSCEQCGRTSLMEFEIYKNLDELMNVYKNVSAINF-----GGKNLNEKRDD 172

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                   ++IGPEGG+  +E     ++  +        ILRS TA ++  A
Sbjct: 173 E------ILIIGPEGGFSEDETAKFKNIYGLNT----KNILRSQTAVISVAA 214


>gi|154173682|ref|YP_001407502.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter curvus
           525.92]
 gi|112803794|gb|EAU01138.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 217

 Score =   99 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 22/220 (10%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISYVG-KSIRFKVEYQSRSQT 77
              K   + + +L    R K G+ + L N KDG ++L +I   G K  R ++ + S    
Sbjct: 12  ENLKIINEAFLHL-KARRAKVGERVNLRNLKDGKDYLYEIEEFGRKDARLRLVFTSTLTV 70

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAE 136
           +       ++ +    ++  I    E+G+G +  V T+++Q N   ++ R+   +  + E
Sbjct: 71  RDYKFSLAWAVVDPKTIEKTIPFLNELGVGKLIFVYTKFSQANFKIDVKRLEYISALSCE 130

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC   +L        L+  L  +     + F     G +N       +       + IGP
Sbjct: 131 QCGRDSLMSFEIYKNLDEFLAVYKDVALVNF-----GGKN-------LTEYKGELLFIGP 178

Query: 197 EGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
           EGG+  EE   ++     +  SL    ILRS TAAV+  +
Sbjct: 179 EGGFALEETRKIN-----SSYSLDTNSILRSQTAAVSVAS 213


>gi|254456868|ref|ZP_05070296.1| conserved hypothetical protein TIGR00046 [Campylobacterales
           bacterium GD 1]
 gi|207085660|gb|EDZ62944.1| conserved hypothetical protein TIGR00046 [Campylobacterales
           bacterium GD 1]
          Length = 227

 Score = 99.6 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKD--GEWLSKISYVGKSIRF 67
           +++      K      G+ + YL  + R   GD +   N  D       ++  V      
Sbjct: 6   IYILHDEASKKSLSIKGELHKYLVKIRRHSVGDELNFRNRDDIKTLHKYRVVQVESRAVE 65

Query: 68  KVEYQSRSQTKQSDVQYIFSP--IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
                S+ +  QSD Q   +   I    ++ ++    E+G+  I  +    +QN +  +D
Sbjct: 66  LELISSKEEITQSDKQLHIAWCVIDAKSIEKVLPSLNEIGVEKISFIYCDRSQN-NIKLD 124

Query: 126 --RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R      ++ +QC   +        +++  +  ++      F D    S+   E+   
Sbjct: 125 FKRFERILEASMQQCGRSSYMEFDTYKSIKEFITEFEDVKVFDFCDNILDSDADFER--- 181

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                   +L+G EGG+   E+E L         +  P +LRS++AAVA  +
Sbjct: 182 --------VLVGCEGGFSQVERELLSKKENFRLDT--PMVLRSESAAVAIAS 223


>gi|218509849|ref|ZP_03507727.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli Brasil 5]
          Length = 103

 Score = 99.2 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +  P  L  LL  W    +I++ DE    +N L  L AI    ++A+L+GPEGG+  
Sbjct: 2   IPDVAEPVKLSDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-RHLALLVGPEGGFSE 60

Query: 203 EEKETLHSLPFVTPLSLGPRILR 225
           EE+  L SL FVT + LGPRILR
Sbjct: 61  EERARLRSLDFVTAIPLGPRILR 83


>gi|262373735|ref|ZP_06067013.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262311488|gb|EEY92574.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 236

 Score = 99.2 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 24/227 (10%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           Q  +L   L++K GD + +       +L+++  +          Q+ S   +  V  I +
Sbjct: 24  QIKHLNQHLQLKAGDTLKVGVRDGQRYLTEVQSITAQQIMLRPIQTESVPNKVPVHLILA 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  MI  +V +G+  I  + +     +++    + ++  Y     EQ     +P
Sbjct: 84  LPRPKVLRRMIMDAVTLGVERISLIHSYRVDKSYWQSPFLQQLDDYVTLGLEQAGDTIVP 143

Query: 145 FIYPPTTLEFLLKN------WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198
            I      +  +++       +     V       S       HAIAH  N  +++GPEG
Sbjct: 144 EIQLYKRFKPFVEDVLPTLISEQRPAYVAHPYAEQSMP-----HAIAHGCN--LIVGPEG 196

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           G+   E E L        +SLG RILR++TA       V  I G  +
Sbjct: 197 GFIPYEIELLKKNG-CQAMSLGNRILRTETA-------VSNILGRLF 235


>gi|110834247|ref|YP_693106.1| 16S ribosomal RNA methyltransferase RsmE [Alcanivorax borkumensis
           SK2]
 gi|110647358|emb|CAL16834.1| conserved hypothetical protein TIGR00046 [Alcanivorax borkumensis
           SK2]
          Length = 238

 Score = 98.8 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
             + + +  Q +++  VL++ EG             ++ I  + K+   +VE++  S + 
Sbjct: 14  GNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVI-KNNEIEVEFKPESNSI 72

Query: 79  QS-DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTI 132
           Q+  +  + +  +   L  ++  +  +G+  I  + +     +     +   D +R   I
Sbjct: 73  QALPLSLLMALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMI 132

Query: 133 SAAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              EQ     LP +          E  L +W    Q + A    G   +L    A     
Sbjct: 133 LGLEQARDTHLPELTLAPRFKPFVEDSLNDWAGTGQRILAH--PGDHPALPCNLA----E 186

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            V + IGPEGG+   E E L    F    S G RILR +TA
Sbjct: 187 PVTLAIGPEGGWTDYEVEMLQQQGFACR-SFGARILRVETA 226


>gi|156089341|ref|XP_001612077.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154799331|gb|EDO08509.1| conserved hypothetical protein [Babesia bovis]
          Length = 265

 Score = 98.8 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 16/225 (7%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK---SIRFKVEYQSRSQTKQSDVQYIFS 87
           ++ +VL+   G  I          +  I+ +     ++R   ++ S    ++  +  +  
Sbjct: 30  HIKYVLKATVGKQIRCGIVSSTIDVGTITCLSPQAITVRLSDKFLSDVPPERPLIDLVVG 89

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR-TYTISA----AEQCDILT 142
             +   LD ++Q S  MG+G I  V +   +  +    ++       +     EQ     
Sbjct: 90  IPRPRSLDKLLQYSASMGVGRILLVCSSRVELDYLKSHQLEMQNIEESLLLGMEQGVTTY 149

Query: 143 LPFIYPPTTLEFL---LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEG 198
           +P +    +L  L   L+      +++      G+E++L  L   +H+   + + IGPEG
Sbjct: 150 MPEVQIHRSLGSLQRSLEKEPMATRLIAHP---GTEDTLGSLGITSHLSGPILVAIGPEG 206

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           G+   E +   SL F    ++G RILR++ AAVA ++ +Q +  D
Sbjct: 207 GWLDHEVDFYASLGFRKF-NIGERILRAEVAAVAIISQLQLLLND 250


>gi|218680825|ref|ZP_03528722.1| 16S rRNA m3U1498 methyltransferase [Rhizobium etli CIAT 894]
          Length = 105

 Score = 98.4 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +  P  L  LL  W    +I++ DE    +N L  L AI    ++A+L+GPEGG+  
Sbjct: 4   IPEVAEPVKLLDLLDRWPKERRIIYCDEGDAGQNPLPVLSAIRE-KHLALLVGPEGGFSE 62

Query: 203 EEKETLHSLPFVTPLSLGPRILR 225
           EE+  L SL FVT + LGPRILR
Sbjct: 63  EERARLRSLDFVTAIPLGPRILR 85


>gi|148652676|ref|YP_001279769.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter sp. PRwf-1]
 gi|148571760|gb|ABQ93819.1| protein of unknown function DUF558 [Psychrobacter sp. PRwf-1]
          Length = 237

 Score = 98.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 19/234 (8%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTK 78
                   Q  ++  VL++  GD++ +         + IS +    I       + +   
Sbjct: 15  QTVLCDPAQIQHIRQVLQLGVGDHLKVGQKHGNIGTAVISEMRSDQIILTDMVLTTAPPA 74

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAA 135
           + ++  I +  +   L  +I     +G+  I  V +  T  +++    + R+  +     
Sbjct: 75  KLNLTVILALPRPKVLRRLIMDMTAIGVRDIVLVNSYRTDKSYWQSPMLTRLDEFVHEGL 134

Query: 136 EQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAIAHIPNVA 191
           +Q      P IY     +  +++    W    Q V A     +  S         +P + 
Sbjct: 135 QQGMDTVPPNIYLKKRFKPFVEDELSLWAQAQQAVVAHPYAAT--SFSDWSDRNGLPQI- 191

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           + IG EGG+   E E LH+      ++LG RILR++       A V A+CG ++
Sbjct: 192 LCIGAEGGWIEYEIELLHNNG-CHSVNLGDRILRTE-------AAVNALCGRYF 237


>gi|224532070|ref|ZP_03672702.1| conserved hypothetical protein [Borrelia valaisiana VS116]
 gi|224511535|gb|EEF81941.1| conserved hypothetical protein [Borrelia valaisiana VS116]
          Length = 238

 Score = 98.0 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 16/227 (7%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++KE D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDARAEHLVKILKLKENDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIEE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G+  I    T  T+        +  +    +
Sbjct: 69  SNKLKKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  +  LP I     L+  L+         F  +    +NS + L  I  I N 
Sbjct: 129 LIAGAMQGGVTYLPKIKIMKNLKDSLQYIKQE---NFEIKILLEKNSKKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            I++GPE G+  +EK+ +    F +P ++   ILR++TA +AA +++
Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SPYNISSNILRTETAIIAA-SII 230


>gi|315638086|ref|ZP_07893271.1| RsmE family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481934|gb|EFU72553.1| RsmE family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 217

 Score = 97.7 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 24/233 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNG-KDGEWLSKISYVGK-S 64
           ++ L+        +      +++ +L  V R+KEG+++ L N   D  +  +I  + + S
Sbjct: 1   MQFLYHKE--AKNSSIFLEKEEFLHL-KVRRVKEGESLNLRNLQDDFLYTYRIGDLKRNS 57

Query: 65  IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYN 123
               +  Q  + T +S V      I+   ++ ++    EMG+  +  V   ++Q     +
Sbjct: 58  CVLSLISQEENLTFKSGVNLALGVIEPKIVEKILPFFNEMGLEKLILVYCEFSQKNFKID 117

Query: 124 MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
             R+    I++ +QC    L  I     ++  L  +     + F  E    +        
Sbjct: 118 KKRLEKILINSCQQCGRGDLMRIEIYENVDSFLAIYPKVVLVDFEGEKKEFD-------- 169

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSL-GPRILRSDTAAVAAMA 235
                +    +G EGG+   E+  +        + L  P IL+S +AA+  ++
Sbjct: 170 ----KDTLYFVGAEGGFSESERRRIKDK-----IVLNSPFILKSQSAALGVLS 213


>gi|291276368|ref|YP_003516140.1| putative RNA methyltransferase [Helicobacter mustelae 12198]
 gi|290963562|emb|CBG39394.1| putative RNA methyltransferase [Helicobacter mustelae 12198]
          Length = 220

 Score = 97.7 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 32/228 (14%)

Query: 21  QGKASGDQYHYLAHVLRMKEGDNIL---LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           +    G+ + +L    R K+   +    L +GK   ++ ++    KS    ++       
Sbjct: 13  ELCIEGELFVHLYKSRRTKKETPLAFCNLMDGKLHHYV-QVEITKKSALLSLQSSQDYVV 71

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVRTYTISAAE 136
                  +++  ++  ++  +    ++G+  +       +Q     ++ R+    I++ E
Sbjct: 72  LPKKTHLLWAITESKNIEKTLPILNQLGVRKLSLFYANRSQRNEKISLPRLEKILIASCE 131

Query: 137 QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
           QC   TL  +      +  L  +  + +I+     C  +   E            ++IGP
Sbjct: 132 QCGRSTLMELEILKNTKEALALYP-SAKILHFGGKCFGQGDFEH----------GVMIGP 180

Query: 197 EGGYHSEEKETLHSL------PFVTPLSLGPRILRSDTAA--VAAMAL 236
           EGG+ +EE               +        +LRS++AA  +AA+ L
Sbjct: 181 EGGFDAEEVRAFLGHEILGIDGGI--------VLRSESAALFIAALGL 220


>gi|76797950|ref|ZP_00780211.1| surface protein [Streptococcus agalactiae 18RS21]
 gi|76586724|gb|EAO63221.1| surface protein [Streptococcus agalactiae 18RS21]
          Length = 118

 Score = 97.7 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 135 AEQCDILTLPFIYPPT--TLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIP 188
           A++     + F+                   +I  A E    E  L    + L  +    
Sbjct: 4   AQRSRASVIVFLRFVLFEKKADFQAELAGFDKIFIAYEESAKEGELSALAQNLQTVKAGD 63

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            +  + GPEGG   +E      +  +  + LGPRI+R++TA + A++++  
Sbjct: 64  KLLFIFGPEGGISPKEIAAFEEVGAIK-VGLGPRIMRTETAPLYALSVISY 113


>gi|326793992|ref|YP_004311812.1| ribosomal RNA small subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
 gi|326544756|gb|ADZ89976.1| Ribosomal RNA small subunit methyltransferase E [Marinomonas
           mediterranea MMB-1]
          Length = 236

 Score = 97.7 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 25/238 (10%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70
                     K +  Q  +++ VL+   GD +   L NG  GE +        S    ++
Sbjct: 8   PEQQQTSDCFKLTDAQLKHISQVLQKNSGDRVRVGLLNGDIGEAV-----FDASGFVNID 62

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMD 125
                      +  + +  + N L   +     MG+  I  + +   + +++       +
Sbjct: 63  RSESLPPAALPLTLVLALPRPNMLKRTLMNVTAMGVKRIYLIHSSKVEKSYWQSPVLKRE 122

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ------IVFADETCGSENSLE 179
            +    +   EQ     +P +      +  +++   +        ++         N+  
Sbjct: 123 NINAILLEGLEQARDTVMPELTFCPRFKPFVEDVLPSLLSKDVLGLIAHPY-----NARA 177

Query: 180 KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               +    ++ + IGPEGG+   E         +  + LG RILR +TA    ++ +
Sbjct: 178 CPIDLGDASSI-LAIGPEGGWSEYEVGKWQEAG-METVHLGERILRVETAVPVLLSRL 233


>gi|307109508|gb|EFN57746.1| hypothetical protein CHLNCDRAFT_143017 [Chlorella variabilis]
          Length = 158

 Score = 97.7 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 8   KRLFVDFPLC---IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
            R ++   L         +   ++  + A  LR+++GD I L +G     L+++  V ++
Sbjct: 10  PRFYIPARLADAAPGAVLRLPAEESRHAAKTLRLRQGDRIELCDGSGFVALAEMGGVDRA 69

Query: 65  IRFKVEYQSRSQTKQSDVQYIFS----PIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
                   +         Q+  +     +K  R D++++K  E+G  A  P++T  +
Sbjct: 70  GAVAQVLDAAQLVPAVGWQWRVACACGSLKGGRSDWLVEKCAELGAAAFTPLLTHRS 126


>gi|197123490|ref|YP_002135441.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp. K]
 gi|196173339|gb|ACG74312.1| protein of unknown function DUF558 [Anaeromyxobacter sp. K]
          Length = 252

 Score = 97.7 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 24/242 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70
              L      + +G +  ++  VLR   GD I   +  G+ GE  ++I            
Sbjct: 8   PGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGE--AEILTATPDEVVIAA 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMD 125
              R     S V  + +  +   L  ++Q +  MG+  +  + +   + +         D
Sbjct: 66  SPDREPPPPSPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPD 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEK 180
            +R   +   EQ     LP +      +  +++     +    +++          +L  
Sbjct: 126 AIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHPAGAAPLEALAP 185

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQA 239
             A A +      IGPEGG+   E   L    F  P +LGPR+LR D AAV  A+   QA
Sbjct: 186 AGARAALA-----IGPEGGWTPYEAAALRDRGFA-PFTLGPRVLRVD-AAVPYAVG--QA 236

Query: 240 IC 241
             
Sbjct: 237 EL 238


>gi|32398792|emb|CAD98502.1| conserved hypothetical protein [Cryptosporidium parvum]
          Length = 343

 Score = 96.9 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 97/276 (35%), Gaps = 65/276 (23%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILL---FNGKDGEWLSKI------------- 58
            +      + S  Q ++   VL +  G  + +    +GK    ++KI             
Sbjct: 56  DINEDLTVELSSRQSNHCISVLEINIGSKVNVGVKNSGKGTATVTKIMRKETNKDGITKS 115

Query: 59  ---------SYVGKSI-------------------RFKVEYQSRSQTKQ-----SDVQYI 85
                      +G  +                      ++  +    ++       +  +
Sbjct: 116 ESIINLSSIEEIGNKVNNRSRRSISEINNLNNFQYAVTIKLDTEIHKEEYKHDYPLIDLL 175

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-----YTISAAEQCDI 140
            +  +    + ++Q +V +G+G I  V T  ++ ++ N  +++            EQ   
Sbjct: 176 IALPRPKVFEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASK 235

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADET-------CGSENSLEKLHAIAHIPNVAIL 193
              P +Y   +  F L+   H     F  E+           + + ++   +H   + + 
Sbjct: 236 TLCPDVYVYASWTFFLQ---HLRNYFFCKESMIGIVADVLGNSKITEIGLQSHTGPIILA 292

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           IGPEGG+  EE   L ++ F   +++G RIL+ +TA
Sbjct: 293 IGPEGGWTKEELTDLITMGF-KVVNMGDRILKVETA 327


>gi|66475514|ref|XP_627573.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|46229333|gb|EAK90182.1| hypothetical protein with a C-terminus transmembrane domain
           [Cryptosporidium parvum Iowa II]
          Length = 336

 Score = 96.9 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 97/276 (35%), Gaps = 65/276 (23%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILL---FNGKDGEWLSKI------------- 58
            +      + S  Q ++   VL +  G  + +    +GK    ++KI             
Sbjct: 56  DINEDLTVELSSRQSNHCISVLEINIGSKVNVGVKNSGKGTATVTKIMRKETNKDGITKS 115

Query: 59  ---------SYVGKSI-------------------RFKVEYQSRSQTKQ-----SDVQYI 85
                      +G  +                      ++  +    ++       +  +
Sbjct: 116 ESIINLSSIEEIGNKVNNRSRRSISEINNLNNFQYAVTIKLDTEIHKEEYKHDYPLIDLL 175

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-----YTISAAEQCDI 140
            +  +    + ++Q +V +G+G I  V T  ++ ++ N  +++            EQ   
Sbjct: 176 IALPRPKVFEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKKESIDEIVQLGLEQASK 235

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADET-------CGSENSLEKLHAIAHIPNVAIL 193
              P +Y   +  F L+   H     F  E+           + + ++   +H   + + 
Sbjct: 236 TLCPDVYVYASWTFFLQ---HLRNYFFCKESMIGIVADVLGNSKITEIGLQSHTGPIILA 292

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           IGPEGG+  EE   L ++ F   +++G RIL+ +TA
Sbjct: 293 IGPEGGWTKEELTDLITMGF-KVVNMGDRILKVETA 327


>gi|153005814|ref|YP_001380139.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029387|gb|ABS27155.1| protein of unknown function DUF558 [Anaeromyxobacter sp. Fw109-5]
          Length = 251

 Score = 96.5 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 22/237 (9%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEY 71
             L      + +G +  ++  VLR   GD I   +  G+ GE  +++    +        
Sbjct: 9   SELAPDGTARLAGRRAMHVHGVLRASAGDRIQAGVIGGRMGE--AEVLSASEGEVVIAPR 66

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH-----YNMDR 126
                   S V  + +  +   L  ++Q    MG+  +  + +   + ++      +   
Sbjct: 67  LEHPPPPPSPVALLAALPRPKILRRVLQAVASMGVKRLVLLGSYRVEKSYFGTPFLDPAA 126

Query: 127 VRTYTISAAEQCDILTLPFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           +R   +   EQ     LP +     + P   + L + +    +++         + LE L
Sbjct: 127 IRAELVLGLEQGRDTVLPEVSVRRFFKPFVEDELDETFPTRARLLAHP---SGSDPLEAL 183

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALV 237
                     + IGPEGG+   E   L +  F TP SLGPR+LR D AAV  A+  V
Sbjct: 184 --APGAERACLAIGPEGGWTPYEAAALCARGF-TPFSLGPRVLRVD-AAVPYAVGQV 236


>gi|95928431|ref|ZP_01311179.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
 gi|95135702|gb|EAT17353.1| protein of unknown function DUF558 [Desulfuromonas acetoxidans DSM
           684]
          Length = 237

 Score = 96.5 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 10/214 (4%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90
           ++  V R   GD + +           I+ +            +     S V+ + +  +
Sbjct: 26  HVDQVHRASVGDRLRVGQLNGQLGTGTITELTDQKLVMKVCCDQPAPSPSCVELVLALPR 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPF 145
              L   +  +  +G+  I  + +   + + +       +R+R + +   EQC    LP 
Sbjct: 86  PKVLKRTLITATTLGIKRITLINSWRVEKSFWQTPLLVSERIREFLVEGLEQCCDTVLPQ 145

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205
           +      +   ++      +    +   +   +E  H         + IGPEGG+   E 
Sbjct: 146 VDCYPLFKPYAEDVLPGQLV--GKQGVVAHPHVEAPHTAPVSDRYVLAIGPEGGFIPYEV 203

Query: 206 ETLHSLPFVTPLSLGPRILRSDTAAVA-AMALVQ 238
             L     V PL LG RIL+ + AA+  A+A + 
Sbjct: 204 NLLLDQGMV-PLVLGSRILKVE-AAMTSAVARLS 235


>gi|320354418|ref|YP_004195757.1| hypothetical protein Despr_2323 [Desulfobulbus propionicus DSM
           2032]
 gi|320122920|gb|ADW18466.1| protein of unknown function DUF558 [Desulfobulbus propionicus DSM
           2032]
          Length = 245

 Score = 96.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 92/236 (38%), Gaps = 12/236 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
              L +  +   +G +  +L  VL++  GD + +   +      ++  +   +       
Sbjct: 8   PAELVVG-EVSLTGRRSEHLRKVLKVVPGDTVRVGVVQGQVGTGRVLAIDGELVRLAVEL 66

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRV 127
           +        ++ I +  +   L  +++++  +G+     + +R  + +         D++
Sbjct: 67  THQPVCDLHIELILALPRPIMLQRILKQATVLGVRRFHLIRSRRVEKSFFHSPVLAPDKI 126

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ---IVFADETCGSENSLEKLHAI 184
           RT+ +   EQ     LP +      +  +++         ++   +  G+   L    + 
Sbjct: 127 RTFLLEGMEQAMDTWLPEVSIHPQFKPFVEDVLPTLNGQGLIAHPDADGTLVGLPV--SG 184

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                + + +GPEGG+   E +      F    ++G RIL  DTA V+ +A +Q +
Sbjct: 185 VAGQRLLLAVGPEGGWSDYELQRFLDQGFY-GFTMGSRILHVDTAVVSLLAQLQLL 239


>gi|289676398|ref|ZP_06497288.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae FF5]
          Length = 60

 Score = 95.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              ++A LIGPEGG +  E        F     LGPR+LR++TA V A+++ Q + GD+
Sbjct: 3   KPASLAFLIGPEGGLNDAEVAQAQDAGF-HAARLGPRVLRTETAPVVALSVAQQLWGDF 60


>gi|254282363|ref|ZP_04957331.1| RNA methyltransferase, RsmE family [gamma proteobacterium NOR51-B]
 gi|219678566|gb|EED34915.1| RNA methyltransferase, RsmE family [gamma proteobacterium NOR51-B]
          Length = 237

 Score = 95.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 22/234 (9%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
             + + +  ++ ++  VL  + G    + L +G  G     I+ +           S S 
Sbjct: 14  GDEVRLTDHRFQHIQRVLGAEVGTSLKVGLVDGNMG--TGTITAIDTGEVLMQVALSESP 71

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYT 131
             +       +  +   L  +++   E G+G +  + +   + +++         ++   
Sbjct: 72  PPRHPYDIALALPRPKMLRRVLRTVAEFGVGTLHLIHSWRVEKSYWQSPLLQTGNIQRAL 131

Query: 132 ISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG--SENSLEKLHAIAHIPN 189
            +  E+     +P ++        +++       + +D         S   L A      
Sbjct: 132 QAGLERSGDTRMPKVHQHRRFRPFIEDI---LPALISDRAGVIVHPGSEPVLAADQTDHK 188

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
             ILIGPEGG+   E E       V+  SLG RIL  DTA       +  + G 
Sbjct: 189 ALILIGPEGGFIPFEVELACQQG-VSVRSLGRRILSVDTA-------LNTVLGR 234


>gi|120556330|ref|YP_960681.1| 16S ribosomal RNA methyltransferase RsmE [Marinobacter aquaeolei
           VT8]
 gi|120326179|gb|ABM20494.1| protein of unknown function DUF558 [Marinobacter aquaeolei VT8]
          Length = 239

 Score = 95.3 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 80/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVE 70
           +       + +  G +  +L  VL+   G  I     NG  G    ++  + ++    + 
Sbjct: 8   EEDFVAPDRVRLRGRRLDHLKTVLKAGTGHRIPAGRVNGLMG--HGEVLSMTETEAELLV 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
              +       +  I +  +      ++Q    +G+  +  + +   + + +       D
Sbjct: 66  TLDQQPPAPLPLTLILAMPRPKMFRRVLQTCASLGVKDLWLINSYKVEKSFWQTPWLTED 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R       EQ     +P ++     +  ++  D    ++       +   +       
Sbjct: 126 HLRENLALGLEQAKDTLMPQVHIRKLFKPFVE--DELPTLLGGKRALVAHPGMAAPCPTH 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                A+ IGPEGG+   E   L        + LGPRILR +TA    ++ +
Sbjct: 184 LNEPAALCIGPEGGFTDYEVGKLEEAG-CQSVHLGPRILRVETAVPVLISRL 234


>gi|281357710|ref|ZP_06244197.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
 gi|281315967|gb|EFA99993.1| protein of unknown function DUF558 [Victivallis vadensis ATCC
           BAA-548]
          Length = 239

 Score = 95.0 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 8/195 (4%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
                 +++  +G          +    + S V  I +  +      ++  +V MG+   
Sbjct: 45  NGLTGTAELLEIGADAATLRPDLTVPPPEPSPVTLIAALPRPKTFQKVLHAAVTMGVKEF 104

Query: 110 RPVITRYTQNTHYNMDRVR-TYTIS----AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ 164
             +       ++++   +           A EQ     +P I      +  ++  D    
Sbjct: 105 WFIACWKVDKSYWSSPNLETASLDETCRLALEQAGDTAMPRIEFRNRFKPFVE--DELPG 162

Query: 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
           I+          +  +   +      A++IGPEGG+   E + L     VTP++LG R L
Sbjct: 163 ILAGRPAYAGHPAATEPIPVGSRGPAALVIGPEGGFTGYEIDLLARHG-VTPVTLGRRTL 221

Query: 225 RSDTAAVAAMALVQA 239
           R++ A  A +A + A
Sbjct: 222 RTEVAVPALLATLTA 236


>gi|315452582|ref|YP_004072852.1| Ribosomal RNA small subunit methyltransferase [Helicobacter felis
           ATCC 49179]
 gi|315131634|emb|CBY82262.1| Ribosomal RNA small subunit methyltransferase [Helicobacter felis
           ATCC 49179]
          Length = 263

 Score = 94.6 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 80/214 (37%), Gaps = 17/214 (7%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDG-EWLSKISY 60
           K+ + ++  F   P   + +    G+ Y +L    R      + L N KD   +  +   
Sbjct: 30  KLGARMQ--FSYHPKAGELELIIEGELYRHLYLSRRTSAQTLLALRNLKDNYLYFYQQME 87

Query: 61  VGKS-IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
           + K   R + V+ Q   QT       +++ I    ++ ++    +MG+  I      Y+Q
Sbjct: 88  INKKYARLRCVQSQETPQTPLHQTHLLWAIIALKNVEKVLPYLNQMGVCKISFFYADYSQ 147

Query: 119 NTHY---NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
                  +++R     I +++QC    L  +      E  LK +     +        S 
Sbjct: 148 KDQRPEHHLERFEKILIQSSQQCGRSDLMVLEFLENTEQALKTYPKAAVMDLH--GTHSS 205

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
             L+ L          ++IGPEGG+   E+E   
Sbjct: 206 ACLQDLQQ-------GVMIGPEGGFSQRERELFE 232


>gi|146305552|ref|YP_001186017.1| hypothetical protein Pmen_0515 [Pseudomonas mendocina ymp]
 gi|145573753|gb|ABP83285.1| protein of unknown function DUF558 [Pseudomonas mendocina ymp]
          Length = 236

 Score = 94.6 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 11/232 (4%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           D     + + + SG +  +L  V R + GD + +          ++  +           
Sbjct: 8   DADFVGEDRVRLSGRRLKHLHEVHRAEAGDRLRVGRLGGLMGEGRLMALDAEHAELQVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
            ++   +  +  + +  +   L  ++Q    MG+  +  V +   + + +       + +
Sbjct: 68  DQAPPAKLPLTLVLALPRPKMLKRVLQTVSAMGVPRLVLVNSYRVEKSFWQTPFLEAEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +    ++E   K +  +     A  T G         A    
Sbjct: 128 REQLILGLEQARDTVLPDV----SIEKRFKPFVEDRLPALATGTLGLIGHPGDYPACPRA 183

Query: 188 --PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 184 VEEPVTLAIGPEGGWIPYEVDLLRQAAGLQPVQLGERILRVETAVPALLARL 235


>gi|254785360|ref|YP_003072789.1| 16S ribosomal RNA methyltransferase RsmE [Teredinibacter turnerae
           T7901]
 gi|237686961|gb|ACR14225.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 236

 Score = 94.2 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 25/230 (10%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           T+   S  Q  ++  VL+ + G    + + +GK G     +                +  
Sbjct: 15  TEATLSERQTRHIQQVLKARTGSLLKVGVIDGKLGY--GCLHQTDGGWGLTDIQLETAPP 72

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD-------RVRTY 130
               +  + +  +   +  ++Q +  MG+  I  + T   + + +          R +  
Sbjct: 73  APLPLSLVLALPRPQMIKRILQTAACMGVARIHLLQTAKVEKSFWQSPAVTESAIREQLI 132

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIA 185
                EQ     LP +          ++      D + +++                 +A
Sbjct: 133 LG--LEQAGATQLPQVEKHCRFRPFAEDALPGIADGHTKLIAHP------GDYPACPRLA 184

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                 + IGPEGG+   E     +  F     LG RIL+ +TA    +A
Sbjct: 185 KNETAVLAIGPEGGFTEGEVSYFLNEGFA-AFQLGARILKVETAVPVTLA 233


>gi|317968924|ref|ZP_07970314.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CB0205]
          Length = 251

 Score = 94.2 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 81/237 (34%), Gaps = 14/237 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
                 + +   + ++  ++ +VL+   G+ + L           I  +  S        
Sbjct: 8   PEDWIDEQRVLLTDERASHVRNVLKSSVGETLRLGLIGGACGQGLIESLDSSGVVLRAVL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT--- 129
                K+     + +  +   L  ++++  E G+  +  + +   + +++    ++    
Sbjct: 68  GEPPPKRHPFDLVLALPRPKMLRRILRQCAEFGISHLHVINSARVEKSYWQSPLLQASNV 127

Query: 130 --YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC---QIVFADETCGSENSLEKLHAI 184
               ++  E+      P ++        +++        ++    E    E   +     
Sbjct: 128 EDALLAGMERSRDTIAPQVHLHQRFRPFIEDELPGLCAGRLCLITEMGAEEPLAQH---- 183

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                  ++IGPEGG+   E E   +     P+ LG R L  DTA  A +A   A+ 
Sbjct: 184 -AGQPALVMIGPEGGFVPFEIELAQAHG-ARPVHLGERTLSVDTALSATLAQGSAVF 238


>gi|254480005|ref|ZP_05093253.1| conserved hypothetical protein TIGR00046, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214039567|gb|EEB80226.1| conserved hypothetical protein TIGR00046, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 235

 Score = 94.2 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 18/230 (7%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           LF         Q + +G +  +L  V     GD + +     G   + I  + K+     
Sbjct: 5   LFSAKDRNENGQLQITGARLEHLLAVHGKDSGDTVRVGEINGGIGNATIISIDKNAAVLE 64

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124
               +    +  +  + +  +   L  +++ + E G+G +  + +   + + +       
Sbjct: 65  PMLDQQAPAKLPLTLVVALPRPKMLRRILRSTAEFGVGELHLINSYRVEKSFWQTPVLQP 124

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           + +  Y +   EQ     LP ++     +  +++              G +  L      
Sbjct: 125 EAIEQYLLQGLEQSRDTCLPAVHLHKRFKPFVEDELPVLM-------PGKQALLAHPGDY 177

Query: 185 AHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
              P        + IGPEGG+   E E L S      +SLGPRILR + A
Sbjct: 178 PPCPRGVAMPTLLFIGPEGGFIPYEIEKLESAG-CQTVSLGPRILRVENA 226


>gi|294670652|ref|ZP_06735528.1| hypothetical protein NEIELOOT_02375 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307622|gb|EFE48865.1| hypothetical protein NEIELOOT_02375 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 192

 Score = 93.8 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           + R F+   L +       GD   +L +VLR + G+ I+LFNG    + + ++ + K   
Sbjct: 1   MPRFFLSAALHVGETVALPGDVVRHL-NVLRCRIGEGIVLFNGDGLSYHAVLNSLDKRAA 59

Query: 67  FKVEYQSRS--QTKQSDVQYIFSPIKTNRLDYMIQK 100
                 SR         +  I +     R+D+ +QK
Sbjct: 60  EAEISSSRPSENESPLHITLIQAVSSGERMDFTLQK 95


>gi|82622375|gb|ABB86775.1| unknown [Theileria lestoquardi]
          Length = 201

 Score = 93.8 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTI 132
           ++  V  +    +   LD ++Q S  +G+G I  + +   + +       + + +    I
Sbjct: 19  EKPVVDLVVGIPRPKSLDKLLQYSASIGVGNIDLICSSKVEKSYWASHKLSKESINKSLI 78

Query: 133 SAAEQCDILTLPFIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
              +Q     +P +    +L   E   K  D+  +++   ++  +  SL  L+     P 
Sbjct: 79  LGLQQGVCTLMPEVTLFISLGDYERAFKQKDYAMKLIAHPDSEQTLGSL-NLNTHVKGP- 136

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           + + IGPEGG+   E      L FV    L  RILR++ AAVA ++ +  +  D
Sbjct: 137 ILVAIGPEGGWLDHELAYYKKLGFVQF-KLTDRILRTEVAAVAILSQMSLLLND 189


>gi|227892941|ref|ZP_04010746.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
 gi|227865249|gb|EEJ72670.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047]
          Length = 80

 Score = 93.8 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVR 128
            +     +       +  ++++ IQKS+E+G+  I P+ +         +  +  + + +
Sbjct: 2   DRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQ 61

Query: 129 TYTISAAEQCDILTLPFIY 147
              I+A EQC    +P I 
Sbjct: 62  KIAIAACEQCGRNRVPEIR 80


>gi|149375845|ref|ZP_01893613.1| hypothetical protein MDG893_04532 [Marinobacter algicola DG893]
 gi|149359970|gb|EDM48426.1| hypothetical protein MDG893_04532 [Marinobacter algicola DG893]
          Length = 239

 Score = 93.8 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 23/240 (9%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRF 67
           LF D           +G +  +L  VL++ EGD   + L +G  G     +         
Sbjct: 6   LFQD-DFVAADTAVLTGRRLAHLHSVLKVAEGDLVPVGLVDGNIGTGR-VLRLTDTEAAL 63

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM--- 124
           +VE  S+       +  I +  +      ++Q    +G+  I  +     + + +     
Sbjct: 64  QVELTSQPPAPLP-LTLILAMPRPKMFRRVLQTCATLGVKDIWLINAYKVEKSFWQTPWL 122

Query: 125 --DRVRTYTISAAEQCD-----ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENS 177
             D +R   +   EQ        L +  ++ P   + L     +   +V    T      
Sbjct: 123 SDDNLRENMVLGLEQARDTQLPRLHVRKLFKPFVEDELPALLRNTHALVAHPGTS----- 177

Query: 178 LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                 +       + +GPEGG+   E + L        + LG RILR +TA    ++ +
Sbjct: 178 --TPCPVHINEPATLCVGPEGGFIPYEIDKLTEAG-CEAVHLGSRILRVETAVPVLVSRL 234


>gi|87122934|ref|ZP_01078798.1| hypothetical protein MED121_19796 [Marinomonas sp. MED121]
 gi|86161783|gb|EAQ63084.1| hypothetical protein MED121_19796 [Marinomonas sp. MED121]
          Length = 239

 Score = 93.8 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 27/244 (11%)

Query: 10  LFVDFPLCIK-TQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIR 66
           + +D    I  T       Q  +L  V++ + GD + +   NG  GE             
Sbjct: 4   ILLDPEQAIDETHFALDSRQSEHLKKVIKAEVGDKLRVGIINGPMGEATYLGVNSDGITE 63

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTN---RLDYMIQKSVEMGMGAIRPVITRYTQNTHY- 122
            ++   ++   K   +  + +  + N   R    I     MG+  I  + +   + +++ 
Sbjct: 64  IEIIQLTQQAPKPLPLTLVLALPRPNMLKRTLLNISA---MGVKKIILLNSAKVEKSYWQ 120

Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                 D +    +   EQ     LP +   T     +++       +   E  G    L
Sbjct: 121 SPVLKADNLERILLEGLEQARDTQLPELQMMTRFRPYVED-------LLPREMAGKLALL 173

Query: 179 EKLHAIAHIP-----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              +     P        + IGPEGG++  E    H   F   + LG RIL+ +TA    
Sbjct: 174 AHPYQADDCPINLTQESILAIGPEGGWNEFEVSKWHEAGF-KSVHLGERILKVETAVPVL 232

Query: 234 MALV 237
           ++ +
Sbjct: 233 LSRL 236


>gi|222824414|ref|YP_002575988.1| conserved hypothetical protein (DUF558 domain protein)
           [Campylobacter lari RM2100]
 gi|222539635|gb|ACM64736.1| conserved hypothetical protein (DUF558 domain protein)
           [Campylobacter lari RM2100]
          Length = 220

 Score = 93.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 23/225 (10%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE---WLSKISYVGKSIRF 67
           F+  P       +   +   +L    R+K GD I+L N KD     +   I    +S   
Sbjct: 3   FLYHPQSGALNLELENEALLHL-KARRVKVGDKIILKNLKDFFAYTYEC-IELSRRSCVL 60

Query: 68  -KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD- 125
             ++ +   Q  ++ +    + I    ++  +    E+G+  +  V   Y+Q  ++ +D 
Sbjct: 61  NLLDKKEEKQEIKTHLHLALAVIDPKIIEKTLPFLNELGVAKLSFVYMDYSQK-NFKLDF 119

Query: 126 -RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            R+    I +++QC   +L  +      +   + +++   I F  E          L + 
Sbjct: 120 KRMEKILIESSQQCSRASLMELESFGDFKKFQQVYENIVLIDFEGE---------DLMSF 170

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
               +V  LIG EGG+  +E+E       +        IL++ TA
Sbjct: 171 EPSKHV-FLIGAEGGFSQKEREESVKKAKLQA----DFILKAQTA 210


>gi|149917598|ref|ZP_01906095.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1]
 gi|149821661|gb|EDM81059.1| hypothetical protein PPSIR1_25806 [Plesiocystis pacifica SIR-1]
          Length = 243

 Score = 92.7 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ--SRSQTKQSDVQYIFS 87
            ++        GD + +         +++  + +           S      S V    +
Sbjct: 29  KHIK----AAVGDALGVGLLGGKMGRARVVRIDREALELELEAALSEPPPPPSAVTLAVA 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILT 142
             +   L+ ++Q+   +G+       +R  + ++++        +R   +   EQ     
Sbjct: 85  LPRPATLEKVLQQGTVLGIKRFLLFHSRRVEKSYWDASALEPAALRRQLLLGLEQTRDTI 144

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP +          ++   + +                  A   +  + +++GPEGG+  
Sbjct: 145 LPELEFHRRFRPFAEDRLASLRAAAPVLVADPHGPRPCPRA--QVGPLTLVLGPEGGFVE 202

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E+E   +L     + LGPRI+R +TAAVA +A +
Sbjct: 203 FERERFAALGDAL-VHLGPRIMRVETAAVALLARL 236


>gi|315186740|gb|EFU20498.1| protein of unknown function DUF558 [Spirochaeta thermophila DSM
           6578]
          Length = 235

 Score = 91.9 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS-- 87
           +L  VLR++EG+ + +          ++  V +  +R    +             + +  
Sbjct: 24  HLVSVLRVREGEVVRVGVLGGRMGEGRVEEVAREEVRLSCTFDRDPPPPLPVTLLVAAVR 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILT 142
           PI   RL   +     +G+  +     R ++ +      +         I  AEQ     
Sbjct: 84  PIVGRRLLRDLSA---LGLERVVVFPARLSERSYLESTLWKEGGWERSLIEGAEQGVTTR 140

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P +    +LE  ++      + V  +     E  +             + +GPE G+  
Sbjct: 141 VPEVVRVRSLEEGVRMCGDGVRYVCDEAAGQGEGVVR-------GARYVVAVGPERGWTD 193

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EE+  L    FV  LSLGPR+LR++ A   A+  V    G W
Sbjct: 194 EERRVLEREGFVR-LSLGPRMLRTEVACHVALGRVAEGAGWW 234


>gi|322378683|ref|ZP_08053116.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1]
 gi|321148900|gb|EFX43367.1| hypothetical protein HSUHS1_0338 [Helicobacter suis HS1]
          Length = 222

 Score = 91.9 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 22/218 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDG-EWLSKISYVGKS 64
           ++  F+        +   +   Y ++    RM     IL+F N  D   +  K   V K 
Sbjct: 1   MQ--FIYHKEAGSQELLLTAQSYRHVYLSRRMHA-QEILVFRNLADHILYFYKPLEVKKH 57

Query: 65  -IRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             R  +  Q  R    +     I++ I +  ++ ++    +MG+G I      ++Q    
Sbjct: 58  HARLSLLGQELRPICPKRPSHLIWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEK 117

Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R   I++ EQC   T   +      +  L+ +       F D+T G     
Sbjct: 118 IDAPKLERFRRILIASCEQCGRSTCMELEVLENTKMALERYPTAYIFDFHDQTQG----- 172

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP 216
             L ++ +     I IGPEGG+ S+E++        +P
Sbjct: 173 --LVSLENG----IFIGPEGGFCSQERQLFKDREIYSP 204


>gi|297794975|ref|XP_002865372.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311207|gb|EFH41631.1| hypothetical protein ARALYDRAFT_356649 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 139

 Score = 91.9 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-NTHYNMDRVRTYTISAAEQCDILTLPFIY 147
           +K  R D++I+K  E+G  ++ P++T  +   +   +DR+   + + A QC  L    + 
Sbjct: 7   LKGGRADWLIEKCTELGASSVTPLLTERSSIISENRVDRLERVSFAVATQCQRLHQIVLN 66

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG--------- 198
           PP     LL +   +   + A  T  +   L  +++ A   +  +++G EG         
Sbjct: 67  PPIKFVTLLDHIFKSKLCLVA--TAEATPLLNAVNSSAKESSGLLIVGSEGVCYNLTVNY 124

Query: 199 ----GYHSEEKETLH 209
                +  +E E + 
Sbjct: 125 EIEANFTKKEVEMML 139


>gi|294651883|ref|ZP_06729173.1| RsmE family RNA methyltransferase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822206|gb|EFF81119.1| RsmE family RNA methyltransferase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 236

 Score = 91.5 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 12/221 (5%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           Q  +L   L++  GD + +    +  +L+++ YV +        +  +  ++  V  I +
Sbjct: 24  QLKHLQQHLQLSVGDTLKIGVRNEQRYLTEVLYVSEQRIIVKPIRVEAIPEKLPVHLILA 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  M+  +V +G+  I  + +     +++    + ++  Y     EQ      P
Sbjct: 84  LPRPKVLRRMVMDAVTLGVERISLIHSYRVDKSYWQTPFLQQLDDYVTLGLEQAGDPIAP 143

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            I      +  +++    C I        +    E +   A     ++++GPEGG+   E
Sbjct: 144 EIQLYKRFKPFVEDILP-CFITTEAAAYVAHPYAEAVMPHAIQHRCSVIVGPEGGFIPYE 202

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            E +        + LG RILR++TA       V  I G  +
Sbjct: 203 IELMQKNG-CQAVCLGNRILRTETA-------VAHILGRLF 235


>gi|262377206|ref|ZP_06070431.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262307944|gb|EEY89082.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 237

 Score = 91.5 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 84/218 (38%), Gaps = 12/218 (5%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90
           +L   L+++ GD + +   +   +L++I  + +        Q  +  ++  V  I +  +
Sbjct: 26  HLQQHLQIQVGDTLKVGIREGQRYLTEIVEISEKAVRLKPLQQETVPEKLPVTLIVALPR 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIY 147
              L  +I  SV +G+  I  + +     +++    + ++  Y     EQ      P I 
Sbjct: 86  PKVLRRLIMDSVTLGVEKIILLHSYRVDKSYWQTPFLQQLNHYIELGLEQAGDTVAPKIE 145

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
                +  +++               +    E+    A      I+IGPEGG+   E + 
Sbjct: 146 LYKRFKPFVEDILPGLIGTDCP-AYVAHPYAEQAMPFAIDHPCTIVIGPEGGFIPYEVDL 204

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           L        +SLG RI+R++T       ++  + G  +
Sbjct: 205 LIKNG-CQAVSLGNRIIRTET-------VIPYVLGRLF 234


>gi|42528220|ref|NP_973318.1| 16S ribosomal RNA methyltransferase RsmE [Treponema denticola ATCC
           35405]
 gi|41819490|gb|AAS13237.1| conserved hypothetical protein TIGR00046 [Treponema denticola ATCC
           35405]
          Length = 278

 Score = 91.5 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 33/240 (13%)

Query: 31  YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFK---------------VEYQS 73
           ++  +L +KEGD     + NGK GE  ++IS++ +                     +   
Sbjct: 45  HIKKILNLKEGDVFKAGIINGKIGE--AQISHLSEEKIVFSFCPNPPDKGIADNGADKVE 102

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVR 128
                   ++ I    +  +L  +++ +  +G   I    T   + ++        + ++
Sbjct: 103 TRPLPLPPIKIILGFPRPIQLRRILRDAASLGFAEIVLCGTDLGERSYLKSNLSSPEEIK 162

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSENSLEKLHAI 184
            Y +    Q     LP      +++  LK+         +++      G   SL     +
Sbjct: 163 KYLLDGISQAGQTMLPAFSFCNSVKEALKDLKAASFKGSKVLL---DIGDFPSLSTFR-M 218

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
               +V I IG E G+   E++   S  F+ P S+G RILR++TA  +A++++ A  G W
Sbjct: 219 TKGESVLITIGSERGWTQNERDVFFSEGFI-PYSMGKRILRTETALTSALSVLLANNGFW 277


>gi|322380178|ref|ZP_08054413.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5]
 gi|321147393|gb|EFX42058.1| hypothetical protein HSUHS5_0511 [Helicobacter suis HS5]
          Length = 222

 Score = 91.5 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 22/218 (10%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF-NGKDG-EWLSKISYVGKS 64
           ++  F+        +   +   Y ++    RM     IL+F N  D   +  K   V K 
Sbjct: 1   MQ--FIYHKEAGSQELLLTAQSYRHVYLSRRMHA-QEILVFRNLADHILYFYKPLEVKKH 57

Query: 65  -IRFKVEYQS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY 122
             R  +  Q  R    +     I++ I +  ++ ++    +MG+G I      ++Q    
Sbjct: 58  HARLSLLGQELRPICPKRPSHLIWAIIASKNIEKVLPYLNQMGVGKISFFYAHFSQKNEK 117

Query: 123 ----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSL 178
                ++R R   I++ EQC   T   +      +  L+ +       F D+T G     
Sbjct: 118 IDAPKLERFRRILIASCEQCGRSTCMELEVLENTKMALERYPTAYIFDFHDQTQG----- 172

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTP 216
             L ++ +     I IGPEGG+ ++E++        +P
Sbjct: 173 --LVSLENG----IFIGPEGGFCNQERQLFKDREIYSP 204


>gi|226953409|ref|ZP_03823873.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226835840|gb|EEH68223.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 236

 Score = 91.1 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 12/221 (5%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           Q  +L   L++  GD + +    +  +L+++ YV +        +  +  ++  V  I +
Sbjct: 24  QLKHLQQHLQLSVGDTLKIGVRNEQRYLTEVLYVSEQRIIVKPIRVEAIPEKLPVHLILA 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  M+  +V +G+  I  + +     +++    + ++  Y     EQ      P
Sbjct: 84  LPRPKVLRRMVMDAVTLGVERISLIHSYRVDKSYWQTPFLQQLDDYVTLGLEQAGDPIAP 143

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            I      +  +++    C I        +    E +   A     ++++GPEGG+   E
Sbjct: 144 EIQLYKRFKPFVEDILP-CFITTEAAAYVAHPYAEAVMPYAIQHRCSVIVGPEGGFIPYE 202

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            E +        + LG RILR++TA       V  I G  +
Sbjct: 203 IELMQKNG-CQAVCLGNRILRTETA-------VAHILGRLF 235


>gi|299768415|ref|YP_003730441.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter sp. DR1]
 gi|298698503|gb|ADI89068.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter sp. DR1]
          Length = 235

 Score = 91.1 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 81/210 (38%), Gaps = 14/210 (6%)

Query: 40  EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ 99
            G N+ +       + ++I  + +           +   +  V  I +  +   L  +I 
Sbjct: 35  VGQNLKVGVRNGARYTTEIISINEQEVCIRPISEETVPAKLPVHLIVALPRPKVLRRLIM 94

Query: 100 KSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156
            SV +G+  I  + +     +++    + ++  Y     EQ     +P I+     +  +
Sbjct: 95  DSVTLGVERISLIHSYRVDKSYWQTPFLQQLDNYVTLGLEQAGDTIVPEIHMYKRFKLFV 154

Query: 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVT 215
           ++   N  ++  +      +   +     +IP+   I++GPEGG+   E + L       
Sbjct: 155 EDVLPN--LISKETPAYVAHPYAEQSMPVNIPHACSIVVGPEGGFIPYEVDLLTKNG-CQ 211

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            +SLG RILR++T        +  I G  +
Sbjct: 212 AVSLGNRILRTET-------SISYILGRLF 234


>gi|325474581|gb|EGC77767.1| hypothetical protein HMPREF9353_00614 [Treponema denticola F0402]
          Length = 287

 Score = 90.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 42/249 (16%)

Query: 31  YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRF--------------------- 67
           ++  +L +KEGD     + NGK GE L  IS++ +                         
Sbjct: 45  HIKKILNLKEGDVFKAGIINGKIGEAL--ISHLSEEKIVFSFCPNPPDKNIADKGADKNK 102

Query: 68  ---KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN- 123
                    +       ++ I    +  +L  +++ +  +G   I    T   + ++   
Sbjct: 103 DRKDAYEVEKIPLPLPPIKIILGFPRPIQLRRILRDAASLGFAEIVLCGTELGERSYLKS 162

Query: 124 ----MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH----NCQIVFADETCGSE 175
                + ++ Y +    Q     LP     ++++  LK+         +++      G  
Sbjct: 163 NLSSPEEIKKYLLDGISQAGQTLLPAFSFCSSVKEALKDLKAASFKGSKMLL---DIGDF 219

Query: 176 NSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            SL     I    +V I IG E G+   E+E   S  F++  S+G RILR++TA  +A++
Sbjct: 220 PSLSTFRMIK-GESVLIAIGSERGWTQNEREAFFSEGFISY-SMGKRILRTETALTSALS 277

Query: 236 LVQAICGDW 244
           ++ A  G W
Sbjct: 278 VLLANNGFW 286


>gi|86159414|ref|YP_466199.1| 16S ribosomal RNA methyltransferase RsmE [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775925|gb|ABC82762.1| protein of unknown function DUF558 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 249

 Score = 90.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 24/242 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVE 70
              L      + +G +  ++  VLR   GD I   +  G+ GE  ++I            
Sbjct: 4   PGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVVGGRMGE--AEILSAAPDEVVIAA 61

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMD 125
              R     + V  + +  +   L  ++Q +  MG+  +  + +   + +         +
Sbjct: 62  RLDREPPPPAPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPE 121

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEK 180
            +R   +   EQ     LP +      +  +++     +    +++          +L  
Sbjct: 122 ALREQFLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHPAGAAPLEALAP 181

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV-AAMALVQA 239
             A A +      IGPEGG+   E   L    F   ++LGPR+LR D AAV  A+   QA
Sbjct: 182 AGARAALA-----IGPEGGWTPYEAAALRDRGFA-AITLGPRVLRVD-AAVPYAVG--QA 232

Query: 240 IC 241
             
Sbjct: 233 EL 234


>gi|93006553|ref|YP_580990.1| hypothetical protein Pcryo_1729 [Psychrobacter cryohalolentis K5]
 gi|92394231|gb|ABE75506.1| protein of unknown function DUF558 [Psychrobacter cryohalolentis
           K5]
          Length = 247

 Score = 90.0 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 22/228 (9%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++  VL  K GD + +   +     + I+ +  + I         +   + D+  + +  
Sbjct: 26  HVNQVLGAKVGDTLKIGQLEGNLGTAIIADITPERIDLCEISFVTAPPPKLDLTVVLALP 85

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFI 146
           +   L  +I     +G+  I  + +  TQ +++    + R+  + +   +Q      P I
Sbjct: 86  RPKVLRRLIMDMTALGVRDIILINSYRTQKSYWQSPMLSRLDEFVLEGLQQGIDTVAPRI 145

Query: 147 YPPTTL----EFLLKNWDHNCQIVFAD--ETCGSENSLEKLHAIAHIPNVAI----LIGP 196
                     E  L N   N  IV     E   SE   ++L +        +     IG 
Sbjct: 146 SLQKRFKPFVEDELANLITNRAIVAHPYAELSFSEYVQQQLESSESPQKSILPSMVFIGA 205

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG+   E E L        + +G RILR++       A V AI G W
Sbjct: 206 EGGWIDYEVELLAKQG-CQAVHIGARILRTE-------AAVNAILGQW 245


>gi|148239333|ref|YP_001224720.1| hypothetical protein SynWH7803_0997 [Synechococcus sp. WH 7803]
 gi|147847872|emb|CAK23423.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
          Length = 236

 Score = 89.6 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 20/227 (8%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
            + + S  +  ++  VLR ++GD + L          +I  +                 +
Sbjct: 16  QRVRLSDRRAEHIRKVLRSQQGDTLRLGMLGGQLGTGRIEAIDAQAVLITVQLVDPPPAR 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR------TYTIS 133
                + +  +   L  +++   E G+G++  V T     ++      +           
Sbjct: 76  HRFDLVLALPRPKMLRRILRAVAEFGVGSLHLVQTARVDKSY-----WQSPLLADAKVDE 130

Query: 134 A----AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           A     E+     +P ++        +++     CQ          +++   L A+A  P
Sbjct: 131 ALRMGLERSRDTIIPQVHRHRLFRPFIEDRLPAICQGRPCW--IAHQDADVGLSAVAGQP 188

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            V ++IGPEGG+   E      +     + LG RIL  DTA    +A
Sbjct: 189 AV-VMIGPEGGFVPFELTLAEQMG-AQKVHLGGRILSVDTAVATVLA 233


>gi|319403716|emb|CBI77301.1| hypothetical protein BARRO_10234 [Bartonella rochalimae ATCC
          BAA-1498]
          Length = 97

 Score = 89.2 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 47/74 (63%)

Query: 1  MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
          M+ +  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNG+DGEWL+K+ +
Sbjct: 1  MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGQDGEWLAKLLF 60

Query: 61 VGKSIRFKVEYQSR 74
          + K + + V Y  R
Sbjct: 61 IKKKLWWLVLYVKR 74


>gi|319406724|emb|CBI80357.1| hypothetical protein B11C_100024 [Bartonella sp. 1-1C]
          Length = 97

 Score = 89.2 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/74 (50%), Positives = 47/74 (63%)

Query: 1  MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
          M+ +  LKRLFV   L +  +    G Q  YL HVLRMKEG  ILLFNGKDGEWL+K+ +
Sbjct: 1  MRANYKLKRLFVRQLLALNEEIVIEGQQASYLIHVLRMKEGAEILLFNGKDGEWLAKLLF 60

Query: 61 VGKSIRFKVEYQSR 74
          + K + + V Y  R
Sbjct: 61 IKKKLWWLVLYVKR 74


>gi|332978333|gb|EGK15059.1| RsmE family RNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 237

 Score = 89.2 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 19  KTQGKASG-DQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ 76
           +T    +   Q  ++  VL ++ GD + + + K     + I  V  + ++          
Sbjct: 13  QTCLTLTEVSQIKHVQQVLELETGDRLKVGSFKGNLGSAVIEAVSDTQLKLTDITLDILP 72

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTIS 133
             + D+  I +  +   L  +I     +G+  I  V +  T  +++    + R+  +   
Sbjct: 73  PSKLDLTVILALPRPKVLRRLIMDMTAIGVREIILVNSYRTDKSYWQSPMLARIDEFVRE 132

Query: 134 AAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             +Q      P I          E  L  W  +  +V A     S  S  +      +P 
Sbjct: 133 GLQQGVDTIPPVIQLKKRFKPFVEDELSQWATSHTMVVAH--PYSTLSFNQFIEQTGLPQ 190

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           V + IG EGG+   E   L        +++G RILR++       A V A+CG +
Sbjct: 191 V-LCIGAEGGWIEYEVGLLQDHG-CQAVTIGQRILRTE-------AAVNALCGRY 236


>gi|312149666|gb|ADQ29737.1| conserved hypothetical protein [Borrelia burgdorferi N40]
          Length = 238

 Score = 89.2 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 16/229 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  ++  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHIVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G   I    T  T+        +  +    +
Sbjct: 69  SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  I  LP I     L+  LK         F  +    +NS + L  I  I N 
Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           AI++GPE G+  +EK+ +    F +P S+    LR++TA +AA +++ A
Sbjct: 186 AIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232


>gi|260891163|ref|ZP_05902426.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254]
 gi|260859190|gb|EEX73690.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254]
          Length = 90

 Score = 89.2 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPL 217
           ++    +I+FA E  G   SL ++       ++  +IGPEGG   EE + L +   +  +
Sbjct: 8   DYSKYDKIIFAYENSGESKSLSEIIE-KGDKDILYIIGPEGGITQEEVDFLKNNKAME-I 65

Query: 218 SLGPRILRSDTAAVAAMALV 237
           SLG RILR++TAA+    ++
Sbjct: 66  SLGKRILRAETAAIVVCGII 85


>gi|218249710|ref|YP_002374593.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
 gi|226322026|ref|ZP_03797551.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
 gi|218164898|gb|ACK74959.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           ZS7]
 gi|226232616|gb|EEH31370.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
          Length = 238

 Score = 88.8 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 20/231 (8%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +        K    K+     S
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHCIYKKDKKLFFKKIFKIGES 69

Query: 76  QT--KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVR 128
               K   +  +  PI   R   +I++   +G   I    T  T+        +  +   
Sbjct: 70  NKLKKLYVLIGMIRPIVAKR---IIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCE 126

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            + I+ A Q  I  LP I     L+  LK         F  +    +NS + L  I  I 
Sbjct: 127 KHLIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQIN 183

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           N AI++GPE G+  +EK+ +    F +P S+    LR++TA +AA +++ A
Sbjct: 184 NAAIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232


>gi|195941801|ref|ZP_03087183.1| 16S rRNA m3U1498 methyltransferase [Borrelia burgdorferi 80a]
 gi|216264321|ref|ZP_03436313.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221217508|ref|ZP_03588979.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223889140|ref|ZP_03623729.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224533029|ref|ZP_03673635.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|225549337|ref|ZP_03770310.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|225549765|ref|ZP_03770730.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|226320766|ref|ZP_03796322.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|215980794|gb|EEC21601.1| RNA methyltransferase, RsmE family protein [Borrelia burgdorferi
           156a]
 gi|221192786|gb|EEE19002.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
 gi|223885389|gb|EEF56490.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
 gi|224512023|gb|EEF82418.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
 gi|225369725|gb|EEG99173.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
 gi|225370195|gb|EEG99635.1| conserved hypothetical protein [Borrelia burgdorferi 94a]
 gi|226233821|gb|EEH32546.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
 gi|312148337|gb|ADQ30996.1| conserved hypothetical protein [Borrelia burgdorferi JD1]
          Length = 238

 Score = 88.8 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 16/229 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G   I    T  T+        +  +    +
Sbjct: 69  SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  I  LP I     L+  LK         F  +    +NS + L  I  I N 
Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           AI++GPE G+  +EK+ +    F +P S+    LR++TA +AA +++ A
Sbjct: 186 AIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232


>gi|51598323|ref|YP_072511.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia garinii PBi]
 gi|51572894|gb|AAU06919.1| hypothetical protein BG0061 [Borrelia garinii PBi]
          Length = 238

 Score = 88.8 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 15/217 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GERNIYHC-IYKKDKKLFFKKIFKIEE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G+  I    T  TQ        +  +    +
Sbjct: 69  SNKLKKLNVLIGMIRPLVARRIIKELASIGIYEIIFFNTELTQKSYLNSKIFKNNDYEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q     LP I     L+  LK  +      F  +    ++S +KL  I  I N 
Sbjct: 129 LIAGAMQGGTTYLPKIKIMKNLKESLKYIEQE---NFEIKILLEKDSKKKLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            I++GPE G+  +EK+ +    F +P S+   ILR++
Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SPCSISSNILRTE 221


>gi|260891162|ref|ZP_05902425.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254]
 gi|260859189|gb|EEX73689.1| RNA methyltransferase, RsmE family [Leptotrichia hofstadii F0254]
          Length = 126

 Score = 88.8 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV-EYQSRSQTKQSDV 82
                +++ +V R+  GD + + +G+  E+ +KI  + K  +  K+ E +  S +   ++
Sbjct: 21  DKSDCNHIQNVYRLNIGDELRIIDGE-YEYFTKIIEISKKEVAVKISEKKEDSYSLNVNI 79

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
                 +K ++++  IQK  E+G+ +I P+ T      
Sbjct: 80  DVAMGILKNDKMNLAIQKLTEIGVNSIIPLKTERVVVK 117


>gi|88705941|ref|ZP_01103649.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88699655|gb|EAQ96766.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 244

 Score = 88.8 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 8/221 (3%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQS 73
             L    + +  G +  +L  VL+++ GDN+ +           +  +G+ +        
Sbjct: 9   EELGANNELELRGRRLLHLNTVLKVQAGDNVRVGQLNGSIGTGTVRSIGEDLAVIDVSLD 68

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT---- 129
           +       +  + +  +   L  +++   E G+  I  + +   + +++    ++     
Sbjct: 69  QPAPAPLALTVVMALPRPKMLRRILRGMAETGIKEIHLINSFRVEKSYWQSPLLQAPALR 128

Query: 130 -YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
              +S  EQ     +P ++         ++          D   G   + E   A    P
Sbjct: 129 EALLSGLEQAMDTVMPTVHLHRRFRPFAEDSLPAL-CDGCDALLGDLGAAEDYPASPSSP 187

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           ++  L GPEGG+   E+E + +     P+SLGPR+LR +TA
Sbjct: 188 SLLAL-GPEGGFIPFEQELIINAG-ARPVSLGPRMLRLETA 226


>gi|84997543|ref|XP_953493.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65304489|emb|CAI76868.1| hypothetical protein, conserved [Theileria annulata]
          Length = 236

 Score = 88.4 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 34/229 (14%)

Query: 23  KASGDQYHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGK-SIRFKVEYQSRSQTK-- 78
               +  ++L +VL++  G  + +       ++   +  + K SI+ K+    +      
Sbjct: 22  IIDKNTINHLLNVLKVHVGKLLRVGILNSTLDY-GVVESITKWSIKLKLSENFKLYPPVI 80

Query: 79  -QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ 137
            +  V  +    +   LD ++Q                       + + +    I   +Q
Sbjct: 81  EKPVVDLVVGIPRPKSLDKLLQ----------------------LSKESINKSLILGLQQ 118

Query: 138 CDILTLPFIYPPTTL---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
                +P +    +L   E   K  D+  +++   ++  +  SL  L+     P + + I
Sbjct: 119 GVCTLMPEVTMFISLGDYERACKQKDYAMKLIAHPDSEQTLGSL-NLNTHVKGP-ILVAI 176

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG+   E      L FV    L  RILR++ AAVA ++ +  +  D
Sbjct: 177 GPEGGWLDHELAYYKKLGFVQF-KLTDRILRTEVAAVAILSQMSLLLND 224


>gi|33865512|ref|NP_897071.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. WH
           8102]
 gi|33632681|emb|CAE07493.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 237

 Score = 88.4 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 85/224 (37%), Gaps = 12/224 (5%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
           T    +  +  +L  VLR   G++I +         +++     +        +     +
Sbjct: 16  TTVHITDHRADHLRQVLRSAVGESIRIGVVGGKRGDARVEASDATGVTLRVALNEPPPPR 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISA 134
                + +  +   L  +++   E G+  +  + +   + + +       ++V    ++ 
Sbjct: 76  HRFDIVLALPRPKMLRRILRTVAEYGVCNLHLINSARVEKSFWQTPLLTANKVEEALMAG 135

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC--GSENSLEKLHAIAHIPNVAI 192
            E+      P ++        +++       + A   C      S   L A   +P V +
Sbjct: 136 MERARDTVAPVVHQHRLFRPFVED---QLSTICAGRPCWLAEMGSALALSATPAVPAV-V 191

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           +IGPEGG+   E E   ++    P+ LG R+L  DTA  AA+AL
Sbjct: 192 MIGPEGGFVPFELELAQAV-IAQPVHLGTRVLSVDTALTAALAL 234


>gi|294055360|ref|YP_003549018.1| protein of unknown function DUF558 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614693|gb|ADE54848.1| protein of unknown function DUF558 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 248

 Score = 88.4 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 15/218 (6%)

Query: 20  TQGKASGDQ--YHYLAHVLRMKEGDNILL-FNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
            Q   +GD     +L  VLR++ G  + + F G +    +++  +G     +++  +R  
Sbjct: 11  EQMTLAGDDPRAEHLRKVLRVRVGALVFVGFIGAER-ARAEVVSLGDDGSIELKIIAREP 69

Query: 77  TK-QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-----NTHYNMDRVRTY 130
                 +  +    + +    ++ ++  +G+  +        +     +  +  +  R  
Sbjct: 70  APTPLPIDLLIGLPRPHTAKRILFEAASLGVNRLMFFEAERGEPSYARSRLWQTNEWRER 129

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
               AEQ     +P +     L+  L   +    ++   +       + E   A     +
Sbjct: 130 LRLGAEQSFGTHVPDVLMLPDLQTALNELYSAPLRVALDNYEAQGALTGELARA---EDS 186

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            A+ +GPE G+ S E++ L    + T   LGP ++R++
Sbjct: 187 AALALGPERGWSSNERDALRKNGW-TLAHLGPHVMRAE 223


>gi|145628642|ref|ZP_01784442.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae
           22.1-21]
 gi|144979112|gb|EDJ88798.1| hypothetical protein CGSHi22121_06490 [Haemophilus influenzae
           22.1-21]
          Length = 106

 Score = 88.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRLD 95
           M EG+ + LF+G +  + +KI    K  ++ ++  +  +  +    +       +  R++
Sbjct: 1   MTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVISRGERME 60

Query: 96  YMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT 129
           + IQKSVE+G+  I P+ +        + +R+  
Sbjct: 61  FTIQKSVELGVNVITPLWSERC-GVKLDAERMDK 93


>gi|311696090|gb|ADP98963.1| ribosomal RNA small subunit methyltransferase E [marine bacterium
           HP15]
          Length = 239

 Score = 88.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 79/230 (34%), Gaps = 8/230 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           D       +    G +  +L  V+++  GD + +          ++  +  +        
Sbjct: 8   DEDFVATDRAVLRGRRLAHLQSVIKVVAGDTVPVGRADGQLGTGEVIRLTDNEAELRVTL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
           ++       +  I +  +      ++Q    +G+  +  + +   + + +       +++
Sbjct: 68  NQDPPLPLPLTLILAMPRPKMFRRILQTCAALGVKDLWLINSYKVEKSFWQTPWLSDEQL 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R       EQ     +P ++     +  ++  D    ++       +         +   
Sbjct: 128 RENLTLGLEQAKDTLMPQVHIRKLFKPFVE--DELPALLADKRALVAHPGTSTPCPVHLN 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               + IGPEGG+ + E   L        + LGPRILR +TA    ++ +
Sbjct: 186 QPTVLCIGPEGGFTAYEVGKLEEAG-CQSVHLGPRILRVETAVPVLVSRL 234


>gi|224534937|ref|ZP_03675506.1| conserved hypothetical protein [Borrelia spielmanii A14S]
 gi|224513877|gb|EEF84202.1| conserved hypothetical protein [Borrelia spielmanii A14S]
          Length = 238

 Score = 88.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 11/215 (5%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI-LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
           KT    +  +  +L  +L++K+ D       G+   +   I    K + FK  ++     
Sbjct: 12  KTGISLNDARAEHLVKILKLKDNDKFKFAILGEKNIYHC-IYKKDKKLFFKKIFKIEESN 70

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTI 132
           K  ++  +    +      +I++   +G+  I    T  T+        +  +    + I
Sbjct: 71  KPKNLSVLIGITRPIVAKRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNNYEKHLI 130

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           + A Q  I  LP I     L+  LK         F  +    +NS + L  I    N  I
Sbjct: 131 AGAMQGGITYLPKIKIMKNLQDSLKYIKQE---NFEIKILLEKNSKKNLINIEQANNATI 187

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
           ++G E G+  +EK+ +    F +P S+   ILR++
Sbjct: 188 IVGSERGFTEKEKQLIMQYNF-SPCSISSNILRTE 221


>gi|254515178|ref|ZP_05127239.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219677421|gb|EED33786.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 239

 Score = 88.0 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 16/224 (7%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74
            L    Q +  G +  ++  +L+++ GD + +        +  +  + K +        +
Sbjct: 10  ELDSDQQLRLIGRRLRHVNEILKLQAGDQLRVGQLGGQIGVGLVRTIDKQVAVIDVSLEQ 69

Query: 75  SQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYT-IS 133
                  +  + +  +   L  +++   E G+  I  + +   + +++    ++      
Sbjct: 70  EPPTPLPLSVVLALPRPKMLRRILRGLAETGVKDIHLINSFRVEKSYWQSPLLQNTALHE 129

Query: 134 AA----EQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           A     EQ     LP ++         E +L         + AD   G+E+S     +  
Sbjct: 130 ALLAGLEQAMDTVLPAVHLHRRFRPFAEDVLPGLCRGRDALLAD--LGAEDSYP---SEP 184

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             PN+ +L GPEGG+   E++ +        + LGPR+LR +TA
Sbjct: 185 RGPNLLLL-GPEGGFIPFERDLMRQAG-ARAVGLGPRMLRVETA 226


>gi|71066103|ref|YP_264830.1| 16S ribosomal RNA methyltransferase RsmE [Psychrobacter arcticus
           273-4]
 gi|71039088|gb|AAZ19396.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 247

 Score = 88.0 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 22/228 (9%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           ++  VL  K GD + +   +     + I+ +  + I       + +   + ++  + +  
Sbjct: 26  HINQVLGAKVGDTLRIGQLEGNLGNAIIADIAPERILLDEVNLTTAPPPKLNLTLVLALP 85

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFI 146
           +   L  +I     +G+  I  + +  TQ +++    + R+  + +   +Q      P I
Sbjct: 86  RPKVLRRLIMDMTALGVRDIILINSYRTQKSYWQSPMLSRLDEFVLEGLQQGVDTVAPRI 145

Query: 147 YPPTTL----EFLLKNWDHNCQIVFADETCG--SENSLEKLHAIAHIPNVAI----LIGP 196
                     E  L     N  IV         S+   ++L +        +     IG 
Sbjct: 146 SLQKRFKPFVEDKLAQLITNRAIVAHPYGALSFSQYIQQQLESSESSHRSLLPSMVFIGA 205

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           EGG+   E E L +      + +G RILR++       + V AI G W
Sbjct: 206 EGGWIDYEIELLTTQG-CQTVHIGARILRTE-------SAVNAILGQW 245


>gi|224533961|ref|ZP_03674546.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
 gi|224512964|gb|EEF83330.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
          Length = 238

 Score = 88.0 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 16/229 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G   I    T  T+        +  +    +
Sbjct: 69  SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  I  LP I     L+  LK         F  +    +NS + L  I  I N 
Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            I++GPE G+  +EK+ +    F +P S+    LR++TA +AA +++ A
Sbjct: 186 VIIVGPERGFTEKEKQLIAQYNF-SPYSISSNTLRTETATIAA-SIITA 232


>gi|126664752|ref|ZP_01735736.1| hypothetical protein MELB17_02900 [Marinobacter sp. ELB17]
 gi|126631078|gb|EBA01692.1| hypothetical protein MELB17_02900 [Marinobacter sp. ELB17]
          Length = 239

 Score = 87.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 82/231 (35%), Gaps = 12/231 (5%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEY 71
                    + S  +  +L  + ++  GD++ +   NG  G  + +++ +          
Sbjct: 9   ADFISTDTVRLSDRRLEHLRSIRKIAVGDSVPVGQVNGNMG--VGRVTNLTAHYAELHVS 66

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-- 129
             ++  K   +  + +  +       +Q    +G+  +  + +   + + +    ++   
Sbjct: 67  LDQAPPKPLPLTLMLAMPRPKMFRRTLQTCATLGVKELWLINSYKVEKSFWQTPWLQEPA 126

Query: 130 ---YTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
                +   EQ     +P ++     +  ++  D    ++   +   +     +   +  
Sbjct: 127 LHDNLVLGLEQARDTLMPKVHIRKLFKPFVE--DELPALLAGKQALVAHPGSAQPCPVHL 184

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               A+ IGPEGG+   E   L        + LG RILR +TA    ++ +
Sbjct: 185 PGPAALCIGPEGGFTDYEVNKLQQAG-CQAVHLGQRILRVETAVPVLVSRL 234


>gi|325123842|gb|ADY83365.1| hypothetical protein BDGL_002779 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 235

 Score = 87.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 14/210 (6%)

Query: 40  EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ 99
            G N+ +       + ++I  + +               +  V  I +  +   L  +I 
Sbjct: 35  VGQNLKVGVRNGARYTTEIVSMNEQEVCIRPITEEVVPAKLPVHLIVALPRPKVLRRLIM 94

Query: 100 KSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156
            SV +G+  I  + +     +++    + ++  Y     EQ      P I      +  +
Sbjct: 95  DSVTLGVERISLIHSYRVDKSYWQTPFLQQLDNYVTLGLEQAGDTIAPEIQLYKRFKPFV 154

Query: 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVT 215
           ++   N  ++  +      +   +     +IP+   +++GPEGG+   E + L       
Sbjct: 155 EDVLPN--LISKESPAYVAHPYAEQSMPVNIPHACSVVVGPEGGFIPYEIDLLTKNG-CQ 211

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            +SLG RILR++T        +  I G  +
Sbjct: 212 AVSLGNRILRTET-------SISYILGRLF 234


>gi|270588150|ref|ZP_06221433.1| Hypothetical UPF0088 protein [Haemophilus influenzae HK1212]
 gi|270318468|gb|EFA29571.1| Hypothetical UPF0088 protein [Haemophilus influenzae HK1212]
          Length = 92

 Score = 87.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 6  HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS- 64
           + R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI    K  
Sbjct: 2  RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKS 61

Query: 65 IRFKVEYQSRSQTKQS-DVQYIFSPIKTNRL 94
          ++ ++  +  +  +    +       +  R+
Sbjct: 62 VKVEILGRELADKESHLKIHLGQVISRGERM 92


>gi|262280472|ref|ZP_06058256.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258250|gb|EEY76984.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 236

 Score = 87.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 71/204 (34%), Gaps = 22/204 (10%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +           +   +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSINEQEVCLRPISEEAVPAKIPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKN-----WDH 161
             + +     +++    ++          EQ     +P I      +  +++        
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQMYKRFKPFVEDVLPTFISE 164

Query: 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
            C    A         +   HA +      +++GPEGG+   E + L        +SLG 
Sbjct: 165 ECPAYVAHPYAEQSMPINIDHACS------VVVGPEGGFIPYEVDLLTKNG-CQAVSLGN 217

Query: 222 RILRSDTAAVAAMALVQAICGDWY 245
           RILR++T        +  I G  +
Sbjct: 218 RILRTET-------SISYILGRLF 234


>gi|15594408|ref|NP_212196.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia burgdorferi B31]
 gi|3915343|sp|O51089|RSME1_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase E 1;
           AltName: Full=16S rRNA m3U1498 methyltransferase 1
 gi|2687948|gb|AAC66455.1| predicted coding region BB0062 [Borrelia burgdorferi B31]
          Length = 238

 Score = 87.3 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 16/229 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKVGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G   I    T  T+        +  +    +
Sbjct: 69  SNKLKKLYVLIGMIRPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  I  LP I     L+  LK         F  +    +NS + L  I  I N 
Sbjct: 129 LIAGAMQGKITYLPKIKIIKNLKESLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
            I++GPE G+  +EK+ +    F +P S+    LR++TA +AA +++ A
Sbjct: 186 VIIVGPERGFTEKEKQLIAQYNF-SPYSISTNTLRTETATIAA-SIITA 232


>gi|119478494|ref|ZP_01618456.1| hypothetical protein GP2143_11434 [marine gamma proteobacterium
           HTCC2143]
 gi|119448475|gb|EAW29723.1| hypothetical protein GP2143_11434 [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score = 87.3 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 83/231 (35%), Gaps = 9/231 (3%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV 69
           L  D      T    S D+Y ++ ++ + K GD++ +           I  + +      
Sbjct: 5   LLYDTDFITATSVTLSDDRYQHIRNIHQSKAGDSVRVGKLNGLMGTGIIQSIDQHAVKLT 64

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNM 124
               +    +  +  I +  +   +  + +   E+G+  +  + +   + +       + 
Sbjct: 65  VELDQQPPAKLPLTIILALPRPKMIRRLFRSVAELGVEELIVINSYKVEKSFWLSPALDE 124

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            +V+ Y  S  +Q     LP +      +  ++  D   +++       +   + +    
Sbjct: 125 QKVQFYLASGLQQAKDTQLPKVTFKRLFKPFVE--DELPRLIKDCRGLIAHPGIGQPCPH 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
                  + IGPEGG+   E      + F   + LG RILR + A + A+ 
Sbjct: 183 TIESRSVLAIGPEGGFTDYEVGKFIDVGF-EGIHLGERILRVENA-LTAIT 231


>gi|227503128|ref|ZP_03933177.1| protein of hypothetical function (DUF558) [Corynebacterium accolens
           ATCC 49725]
 gi|227076189|gb|EEI14152.1| protein of hypothetical function (DUF558) [Corynebacterium accolens
           ATCC 49725]
          Length = 247

 Score = 86.5 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 34/237 (14%)

Query: 11  FVDFPLCI---KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG--KSI 65
           F+   L           SG +  +   V RM++G+ + L +G        ++       +
Sbjct: 6   FIHPDLSAAQAGDAITLSGPEARHAVTVKRMQQGEKLALIDGTGIRLTLTVTETSGKDHL 65

Query: 66  RFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QN 119
              V+  +        V  + +  K+ R +  +  + + G   I              + 
Sbjct: 66  TGTVDSVTHLPEPHPRVTVVQAIPKSERAELAVDLATQAGADEIIAWQADRCVAKWDGKK 125

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTT----LEFLLKNWDHNCQIVFADETCGS- 174
               + + +    +AA+Q     +P +  P T    +  L +  +    +V  +E   S 
Sbjct: 126 APKAVAKWQAAAEAAAKQSRRDRIPQVRGPLTTRQLVAELAERAESASVLVLHEEATESI 185

Query: 175 -----ENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226
                   +  L           L             TL     V  + LGP +LR+
Sbjct: 186 REVGLHGEVFLLVGPEGGIGEEEL------------TTLREAGAV-AIKLGPEVLRT 229


>gi|332686844|ref|YP_004456618.1| ribosomal RNA small subunit methyltransferase E [Melissococcus
           plutonius ATCC 35311]
 gi|332370853|dbj|BAK21809.1| ribosomal RNA small subunit methyltransferase E [Melissococcus
           plutonius ATCC 35311]
          Length = 122

 Score = 86.5 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++R F++         + +G+ YH++ HV+RM       L    +   L++I  +  S  
Sbjct: 1   MQRYFLEEDYQPIEVYQVAGEHYHHIVHVMRMVPSAKCYLVFNNNIAILAEIIEITSSTV 60

Query: 67  F--KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT--QNTHY 122
              ++E +   +     V    S  K ++L+++IQK  E+G        +  +  +    
Sbjct: 61  LFRELEKEIMQKELPIAVTVACSYPKGDKLEWIIQKGTELGTHQFLGFPSENSIIKWEEK 120

Query: 123 N 123
            
Sbjct: 121 K 121


>gi|403003|emb|CAA51714.1| unnamed protein product [Erwinia chrysanthemi]
          Length = 93

 Score = 86.5 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 6  HLKRLFVDFPLCI-KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64
           + R+F    L     +   S D  +++  VLRM  G  + LF+G +  + ++I   GK 
Sbjct: 2  RIPRIFHPDTLTPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKK 61

Query: 65 -IRFK-VEYQSRSQTKQSDVQYIFSPIKTNRL 94
           +R +    Q+ ++     +       +  ++
Sbjct: 62 NVRVRYAAGQTENRESPLHLHLGQVMSRGEKM 93


>gi|326568756|gb|EGE18826.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           BC8]
          Length = 237

 Score = 86.5 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           +L  VL +  GD I L  GK        +I ++ ++ +       ++S   + ++  + +
Sbjct: 27  HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEIALTKSPPCKLNLVVVLA 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ-----CD 139
             +   L  ++      G+  +  + +  T  ++++   + R+  + I   +Q       
Sbjct: 85  LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTIAP 144

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            +TL   + P   + L         IV           L +      +P V +++G EGG
Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +   E + L S+  V   SLG RILR++       A V A+ G W
Sbjct: 200 FIPYEIQLLVSVG-VQAASLGKRILRTE-------AAVNALLGRW 236


>gi|207108988|ref|ZP_03243150.1| 16S rRNA m3U1498 methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 174

 Score = 86.5 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 18/186 (9%)

Query: 60  YVGKSIRFK--VEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
            + K       V+ Q            I S I+   ++ ++    ++G+  +      ++
Sbjct: 1   EITKKHALLRLVDAQPLEVIASKKTHLILSVIEIKSIEKILPFLNQLGVSKLSLFYADFS 60

Query: 118 QNTHY----NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173
           Q         ++R +   I + EQC    L  +   +  + +L  +     + F  ET  
Sbjct: 61  QRNEKIDSTKLERFQKILIHSCEQCGRSALMELEAFSNTKEVLNAYPKASVLDFKGETLP 120

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
           +    EK           ++IGPEGG+   E+        +  + L   +L+S++A V  
Sbjct: 121 TSVGFEK----------GVIIGPEGGFSEPERGYFKEQK-IYRIPL-DMVLKSESACVFV 168

Query: 234 MALVQA 239
            ++ Q 
Sbjct: 169 ASVAQV 174


>gi|312601158|gb|ADQ90413.1| Ribosomal RNA small subunit methyltransferase E [Mycoplasma
           hyopneumoniae 168]
          Length = 93

 Score = 86.5 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I  P   + LL+   +    + + E      +   ++   +  N  I+IGPEGG+  
Sbjct: 2   IPKINLPINYKDLLEQAKNFPVKLISFE-----RAKNNINIPDNPQNTIIIIGPEGGFDD 56

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
            E +    L F   ++LG RILRS+TAA+  + 
Sbjct: 57  VEIQQAEKLGF-QSITLGKRILRSETAAIFLLT 88


>gi|50086439|ref|YP_047949.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter sp. ADP1]
 gi|49532415|emb|CAG70127.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 235

 Score = 86.1 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 12/218 (5%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90
           +L   L ++  D + +       +L++I  + +        Q  +   +  V  I +  +
Sbjct: 26  HLHKQLNIQVDDTLKVGIRNGKRYLTRIVAIEEQEIRVTPIQQEACPAKLPVTLIVAMPR 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIY 147
              L  +I  SV +G+  I    +     +++    + ++  Y     EQ     +P I 
Sbjct: 86  PKVLRRLIMDSVTLGVERICLTHSYRVDKSYWQTPFLQQLDDYITLGLEQAGDTIVPDIQ 145

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
                +  +++   +  I        +    E     A     +I+IGPEGG+   E + 
Sbjct: 146 LYKRFKPFVEDVLPSL-IAPLRPAFVAHPYAETAMPHAIEHPCSIIIGPEGGFIPYEVDL 204

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           L          LG RILR++TA       V  + G  +
Sbjct: 205 LIKNG-CQAYHLGSRILRTETA-------VSYLLGRLF 234


>gi|296113587|ref|YP_003627525.1| RNA methyltransferase family protein [Moraxella catarrhalis RH4]
 gi|295921281|gb|ADG61632.1| RNA methyltransferase family protein [Moraxella catarrhalis RH4]
 gi|326565506|gb|EGE15677.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           12P80B1]
 gi|326568630|gb|EGE18701.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           BC7]
          Length = 237

 Score = 86.1 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 26/225 (11%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           +L  VL +  GD I L  GK        +I ++ ++ +       ++S   + ++  + +
Sbjct: 27  HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  ++      G+  +  + +  T  ++++   + R+  + I   +Q      P
Sbjct: 85  LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTITP 144

Query: 145 FIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            I           + L         IV           L +      +P V +++G EGG
Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +   E + L S+  V   SLG RILR++       A V A+ G W
Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAVNALLGRW 236


>gi|326559586|gb|EGE10000.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           7169]
 gi|326562674|gb|EGE12976.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           103P14B1]
 gi|326567734|gb|EGE17840.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           BC1]
 gi|326574221|gb|EGE24169.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           101P30B1]
 gi|326575006|gb|EGE24935.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           O35E]
          Length = 237

 Score = 85.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 26/225 (11%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           +L  VL +  GD I L  GK        +I ++ ++ +       ++S   + ++  + +
Sbjct: 27  HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ-----CD 139
             +   L  ++      G+  +  + +  T  ++++   + R+  + I   +Q       
Sbjct: 85  LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTIAP 144

Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            +TL   + P   + L         IV           L +      +P V +++G EGG
Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +   E + L S+  V   SLG RILR++       A V A+ G W
Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAVNALLGRW 236


>gi|219684898|ref|ZP_03539840.1| conserved hypothetical protein [Borrelia garinii PBr]
 gi|219671843|gb|EED28898.1| conserved hypothetical protein [Borrelia garinii PBr]
          Length = 238

 Score = 85.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 15/217 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G+  I    T  T+        +  +    +
Sbjct: 69  SNKLKKLNVLIGMIRPIVARRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  +  LP I     L+  LK         F  +    ++S +KL  I  + N 
Sbjct: 129 LIAGAMQGGVTYLPKIKIMKNLKESLKYIKQE---NFEIKILLEKDSKKKLIDIEQVNNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
            I++GPE G+  +EK+ +    F +  S+   ILR++
Sbjct: 186 TIIVGPERGFTEKEKQLITQYNF-SSCSISSNILRTE 221


>gi|256372071|ref|YP_003109895.1| protein of unknown function DUF558 [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008655|gb|ACU54222.1| protein of unknown function DUF558 [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 241

 Score = 85.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 34/241 (14%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS---IR 66
            F+   L              +L    R+    +I + +G+     + ++ VG+    I 
Sbjct: 15  FFIVDDLEAP---VVDDALAAHL-RARRLGPRASIWIGDGRGRVRAATLAEVGRRTARIE 70

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----TH 121
              E  ++ +         ++P +  RL +M+ K  E+G+  +  +   + +      + 
Sbjct: 71  ACGEIVAQPRRTPEVSIASYAPSR-ERLAWMVAKLAELGIADLWLLRAPHDRRGGEPLSA 129

Query: 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKL 181
           + + R+      AA+Q ++  +  I+   TL+ L +       +V AD   G     +  
Sbjct: 130 HELGRLERIAREAAQQAEVPWVVRIHDVGTLDELPR-----DGVVVADPAGGGLVGRDVR 184

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                     I+IGPE G        +  L  V  + L   ILR +TAAV A AL+ A+ 
Sbjct: 185 ---------CIVIGPESG-------RIDGLADVRRVRLPGGILRVETAAVVAGALLVALG 228

Query: 242 G 242
           G
Sbjct: 229 G 229


>gi|111114883|ref|YP_709501.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia afzelii PKo]
 gi|216263936|ref|ZP_03435930.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
 gi|110890157|gb|ABH01325.1| hypothetical protein BAPKO_0062 [Borrelia afzelii PKo]
 gi|215979980|gb|EEC20802.1| RNA methyltransferase, RsmE family protein [Borrelia afzelii ACA-1]
          Length = 238

 Score = 85.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 17/218 (7%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGISLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G+  I    T  T+        +  +    +
Sbjct: 69  SNKLKKINVLIGMIRPIVAKRIIKELASIGIYEIIFFNTELTEKSYLNSKIFKNNDYEKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I+ A Q  +   P I     L+  LK         F  +    +NS + L  I    N 
Sbjct: 129 LIAGAMQGGVTYFPKIKIMGNLKDSLKYIKQK---NFEIKILLEKNSKKNLIDIEQTNNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVT-PLSLGPRILRSD 227
            I++GPE G+  +EK+ +    F +  +S  P ILR++
Sbjct: 186 TIIVGPERGFTEKEKQLITQYNFASYSIS--PNILRTE 221


>gi|312972814|ref|ZP_07786987.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
          1827-70]
 gi|310332756|gb|EFP99969.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
          1827-70]
 gi|323154654|gb|EFZ40853.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
          EPECa14]
 gi|323173841|gb|EFZ59470.1| ribosomal RNA small subunit methyltransferase E [Escherichia coli
          LT-68]
 gi|332753789|gb|EGJ84168.1| ribosomal RNA small subunit methyltransferase E [Shigella
          flexneri K-671]
 gi|332754632|gb|EGJ84998.1| ribosomal RNA small subunit methyltransferase E [Shigella
          flexneri 2747-71]
          Length = 63

 Score = 85.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 6  HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           + R++   PL   +      D  +++  VLRM  G  + LF+G +  + ++I+   K  
Sbjct: 2  RIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKA 61


>gi|328949325|ref|YP_004366662.1| ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
 gi|328449649|gb|AEB15365.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           succinifaciens DSM 2489]
          Length = 254

 Score = 85.3 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 28/249 (11%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKS-- 64
           LF    +          ++  ++  +L  KEG++    ++ N      + KIS   K   
Sbjct: 5   LFSPEEIL--NPLDIQDERAQHILKILHKKEGESFSAGIIGNQAGTAVIKKISVEEKKSS 62

Query: 65  ---IRFKVEYQSRSQTKQS------DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR 115
                FK        T +S       ++ I    +  +L  +++    +G+  +    T 
Sbjct: 63  DGKKIFKGGKIYFDFTPESDGKKLYPLKMIIGFPRPIQLKRLLRDMASLGVQEVHLTGTE 122

Query: 116 YTQNTHYNMDRVRTYTISAAE-------QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168
             + ++   D        A +       Q     +P ++   TL+  L+  D   +++  
Sbjct: 123 LGEKSYLKSDLATK--GEAEKFLLDGSVQAGSTQIPKLFIHQTLKNCLEQIDLEGKLLAL 180

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           D    S++    L            IG E G+ + E++      F   LS+G RILR++T
Sbjct: 181 DNIEPSQSLSCALKE--KPQKAIAAIGSERGWTNYERQLFRQNGF-ELLSMGKRILRTET 237

Query: 229 AAVAAMALV 237
           A+  A++L+
Sbjct: 238 ASTVAVSLI 246


>gi|262370880|ref|ZP_06064204.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314242|gb|EEY95285.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 236

 Score = 84.9 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 12/218 (5%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90
           +L   L +K GD + +        L+++  V ++              +  V  I +  +
Sbjct: 26  HLHRHLELKAGDTLKVGIQNGKRHLTQVVEVSETAVRIKPLYEEPVPAKLPVTLIVAMPR 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIY 147
              L  +I  +V +G+  I  + +     +++    + ++  Y     EQ      P I 
Sbjct: 86  PKVLRRLIMDAVTLGVEKIILLHSYRVDKSYWQTPFLQQLDQYVTLGLEQAGDTLAPKIE 145

Query: 148 PPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKET 207
                +  +++   +              S  K+      P   ++IGPEGG+   E E 
Sbjct: 146 IYKRFKPFVEDQLPSLISADCPAYVAHPYSDAKMPFAIQHP-CTVVIGPEGGFIPYEVEL 204

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
           L        +SLG RI+R++T       ++  + G  +
Sbjct: 205 LVKNG-CQAMSLGNRIIRTET-------VIPYVLGRLF 234


>gi|237751687|ref|ZP_04582167.1| ribosomal RNA small subunit methyltransferase E [Helicobacter bilis
           ATCC 43879]
 gi|229373053|gb|EEO23444.1| ribosomal RNA small subunit methyltransferase E [Helicobacter bilis
           ATCC 43879]
          Length = 227

 Score = 84.6 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 8/205 (3%)

Query: 7   LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
           ++  F      ++          HYL HV R K+G+ +L  N  D + L    +  K+  
Sbjct: 1   MQ-FFYHKDSGLE-SITLDSKDAHYLFHVRRFKQGETLLTTNLNDMQ-LYSYQHEKKNTF 57

Query: 67  FKVEYQSRSQTKQSDVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NM 124
             +   ++    ++    I + I   +  D ++     + + +++     ++Q     +M
Sbjct: 58  KLIGLHTQVTQPKAYAHIILAMIDLKDIYD-ILPILNALNVASLQLFYADFSQKNRKIDM 116

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
            + +     +  QC  +    +     LE + K + +   I F +     EN  +     
Sbjct: 117 QKAQRMLQYSCMQCGRMKPLEVAIHKDLESVCKAFPNAIAIDFLESVETFENLTQ--QER 174

Query: 185 AHIPNVAILIGPEGGYHSEEKETLH 209
            +I    ++IG EGG+   E+  LH
Sbjct: 175 QNIAKNGVIIGCEGGFSHNERNFLH 199


>gi|326564688|gb|EGE14906.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           46P47B1]
          Length = 237

 Score = 84.6 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 26/225 (11%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           +L  VL +  GD I L  GK        +I ++ ++ +       ++S   + ++  + +
Sbjct: 27  HLKTVLNVHHGDFIKL--GKLGGNMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  ++      G+  +  + +  T  ++++   + R+  + I   +Q      P
Sbjct: 85  LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTITP 144

Query: 145 FIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            I           + L         IV           L +      +P V +++G EGG
Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +   E + L S+  V   SLG RILR++       A   A+ G W
Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAANALLGRW 236


>gi|326572624|gb|EGE22613.1| 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis
           CO72]
          Length = 237

 Score = 84.2 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 26/225 (11%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFS 87
           +L  VL +  GD I L  GK        +I ++ ++ +       ++S   + ++  + +
Sbjct: 27  HLKTVLNVHHGDFIKL--GKLGGDMGHGRIVHMDENQVILSEITLTKSPPCKLNLVVVLA 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  ++      G+  +  + +  T  ++++   + R+  + I   +Q      P
Sbjct: 85  LPRPKVLRRLVMDMTAAGVRHMVFINSYRTDKSYWSSPLLSRLDEFVIEGLQQGIDTITP 144

Query: 145 FIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGG 199
            I           + L         IV           L +      +P V +++G EGG
Sbjct: 145 QITLAKRFKPFVQDDLPSLIGDGGAIVAHPYAEEHFGKLTQ----NQLPQV-LVVGAEGG 199

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           +   E + L S+  V   SLG RILR++       A V A+ G W
Sbjct: 200 FIPYEIQLLDSVG-VQAASLGKRILRTE-------AAVNALLGRW 236


>gi|192361275|ref|YP_001982410.1| 16S ribosomal RNA methyltransferase RsmE [Cellvibrio japonicus
           Ueda107]
 gi|190687440|gb|ACE85118.1| conserved hypothetical protein TIGR00046 [Cellvibrio japonicus
           Ueda107]
          Length = 241

 Score = 84.2 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 82/215 (38%), Gaps = 13/215 (6%)

Query: 31  YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           ++  +   K GD++   + NG  G+    +    + I  ++            +  +   
Sbjct: 31  HITRIHGAKVGDSLKAGILNGPIGQAQ-ILQLTDQEILVELNNLELVSPPALPLTLMLGL 89

Query: 89  IKTNRLDYMIQK-SVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILT 142
            +   L  + Q  +  +G+  +  + +   + +++       D +    I   EQ     
Sbjct: 90  PRPKMLKRIFQTIAT-LGVKQLYLINSYRVEKSYWQTPFLQDDAIHEQLILGLEQGCDTQ 148

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           LP ++     +  ++  DH   ++       +    E          V + +GPEGG+  
Sbjct: 149 LPEVHLIKRFKPFVE--DHLPDLIGHSRALVAHPYTEAPCPRELNKPVTLAVGPEGGFIP 206

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E + L    F TP++LG RILR +TA    ++ +
Sbjct: 207 YEVDMLVRNGF-TPITLGQRILRVETAIPFLLSRL 240


>gi|169497329|gb|ACA58045.1| hypothetical protein ACU_0003 [uncultured bacterium]
          Length = 180

 Score = 84.2 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 2   KIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61
           +      RL V   L    +      Q HYL +VLR+K GD +L FNGKDGEW + ++  
Sbjct: 102 QYDFRSPRLHVTGALKPGAEVTIDKSQAHYLRNVLRLKPGDGVLAFNGKDGEWQAALAD- 160

Query: 62  GKSIRFKVEYQSRSQTKQ 79
           GK     ++ Q+R QT+ 
Sbjct: 161 GKRTALVLQEQTRPQTEP 178


>gi|257483560|ref|ZP_05637601.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae
          pv. tabaci ATCC 11528]
          Length = 88

 Score = 83.8 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 6  HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI 65
           L R F + PL +    +    Q HY++ VLRM EGD + LF+G   E+   +  VGK  
Sbjct: 2  RLSRFFTEAPLSLGEH-ELPEAQAHYISRVLRMTEGDALQLFDGSGQEFRGTLLEVGKKR 60

Query: 66 RFKVEYQSRSQTKQSDVQYIFSP 88
                +S +   +S ++     
Sbjct: 61 VHVQLTESFAGQVESGLRIHLGQ 83


>gi|119505066|ref|ZP_01627142.1| hypothetical protein MGP2080_15294 [marine gamma proteobacterium
           HTCC2080]
 gi|119459048|gb|EAW40147.1| hypothetical protein MGP2080_15294 [marine gamma proteobacterium
           HTCC2080]
          Length = 237

 Score = 83.8 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 22/233 (9%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEY 71
             +        SG ++ ++  VL   EGD++ +   NG  G  L  I  + +        
Sbjct: 9   TEVSSDQIVSLSGRRHKHVRDVLHSTEGDSLRVGVINGATGTGL--ILSMNEVTLELRVE 66

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDR 126
              +         + +  +   L   ++   E G+  I  + +   + +++       ++
Sbjct: 67  LMDAPLPYHSTTLVLALPRPKMLRRTLRSCAEFGVRDIHIIQSYRVEKSYWQSPLLKPEK 126

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ-----IVFADETCGSENSLEKL 181
           +R   ++  E+     LP +      +  +++            +              L
Sbjct: 127 IREALLAGLERSGDTRLPVVTLHRRFKPFVEDQLAGIAGKNPIFLLHP------GDFPPL 180

Query: 182 HAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
                 P+V I+IGPEGG+   E +         P SLG RIL  DT   A +
Sbjct: 181 ETSLLGPHV-IMIGPEGGFIPYEVDLACRSG-AQPRSLGSRILSVDTTVPAVL 231


>gi|291287910|ref|YP_003504726.1| hypothetical protein Dacet_2007 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885070|gb|ADD68770.1| protein of unknown function DUF558 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 233

 Score = 83.8 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 14/206 (6%)

Query: 29  YHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIF 86
             ++ +VL+  EG+ I   + NG+ G   + I  +  S         ++  +  DV  I 
Sbjct: 23  ASHIRYVLKSAEGETIKAGILNGEIG--KAVIEDISDSGVTVSFQPEKAPPEACDVSLIL 80

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDIL 141
           +  +      ++   V  G+  +  + T   + +++       + +  Y + A  QC   
Sbjct: 81  ALPRPKAFRRILFGIVTAGVKDVHVINTWRVEKSYWQSPYLSDENINKYCLEALMQCRDT 140

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYH 201
            +P I+           ++     +    T    +      A    P  A+ IGPEGG+ 
Sbjct: 141 VMPDIHFYRFFTDF---FEEGLPTIPEKRTRFIAHPYGDSGAFVRSP-AAVAIGPEGGFI 196

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSD 227
             E ET     F TP SLG RIL ++
Sbjct: 197 DRELETFIRAGF-TPFSLGERILTTE 221


>gi|290991223|ref|XP_002678235.1| predicted protein [Naegleria gruberi]
 gi|284091846|gb|EFC45491.1| predicted protein [Naegleria gruberi]
          Length = 205

 Score = 83.4 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 72  QSRSQTKQSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHY---NMDRV 127
           Q  +Q K   V       K+ +  + M+     MG+  I P++T   Q+  Y     DR+
Sbjct: 21  QLLNQRKLFSVTASICMTKSRDTFEEMMYTCSSMGVNKIIPIMTEKKQHAEYFENKKDRL 80

Query: 128 RTYTISAAEQCDILT-LPFIYPPTTLEFLLKNWDHNC--QIVFADETCGSENSLEKLHAI 184
               ISA EQ      +P I  P +++   K        + VF D   G +  L  L+ I
Sbjct: 81  EKIMISAVEQSKQFYGMPEIASPLSIQDYCKQMKEQLNERRVFLD-VDGEKPWLSLLNEI 139

Query: 185 AHIP------NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI-LRSDTAAVAAMAL 236
                     N+ +L+GPE     +E+  L  L F + LSL  +I  RS+     A+++
Sbjct: 140 EENKQKMNKMNINLLVGPERDLFDQERAQLAELGFES-LSLARKIVYRSE----VALSV 193


>gi|330886147|gb|EGH20048.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 235

 Score = 83.4 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R K GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAKVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
             +   +  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  DSAPPAKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++              G+   +     +   
Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|167462197|ref|ZP_02327286.1| hypothetical protein Plarl_06505 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 87

 Score = 83.4 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 167 FADETCGSENSLEKLHAIAHIPN-------VAILIGPEGGYHSEEKETLHSLPFVTPLSL 219
              E   S    + L     +         + +++GPEGG+  +E E          + L
Sbjct: 1   ICYEKEDSLQIRDALFQADALKRNDDKPVRIMLIVGPEGGFTEKEIEQAEESG-CRSIGL 59

Query: 220 GPRILRSDTAAVAAMALVQAICG 242
           G RILR++TAA+  +  +    G
Sbjct: 60  GTRILRTETAAMVGLTCILYETG 82


>gi|89095543|ref|ZP_01168447.1| hypothetical protein MED92_15720 [Oceanospirillum sp. MED92]
 gi|89080192|gb|EAR59460.1| hypothetical protein MED92_15720 [Oceanospirillum sp. MED92]
          Length = 236

 Score = 83.4 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 75/208 (36%), Gaps = 19/208 (9%)

Query: 40  EGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMI 98
            G+ + +          ++  + +S I+F+V   S+          + +  +   L  ++
Sbjct: 35  IGETLKVGLLNGHMGTGQVLAIDESSIKFQVILNSQPPAPLPC-TLLLALPRPKMLKRVL 93

Query: 99  QKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS----AAEQCDILTLPFIYPPTTL-- 152
           Q    MG+  +  + +     ++++   +            EQ     +P ++       
Sbjct: 94  QTVSAMGVKQLYLINSYRVDKSYWSSPVLEKQINEHLLLGLEQAGDTVMPEVHLRKRFKP 153

Query: 153 ---EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLH 209
              + L     ++  IV          + E            + IGPEGG+   E E L+
Sbjct: 154 FVEDELPDIARNSRAIVAHPYLAKPCPTAENTLT-------TLAIGPEGGFIPYEIEKLN 206

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237
              F +   +G RILR +TA  A ++ +
Sbjct: 207 EAGFESA-HIGERILRVETAVPALLSRL 233


>gi|225552017|ref|ZP_03772957.1| conserved hypothetical protein [Borrelia sp. SV1]
 gi|225371015|gb|EEH00445.1| conserved hypothetical protein [Borrelia sp. SV1]
          Length = 238

 Score = 83.4 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRS 75
           KT    +  +  +L  +L++K+ D     +L  G+   +   I    K + FK  ++   
Sbjct: 12  KTGILLNDTRAEHLVKILKLKDNDKFKFGIL--GEKNIYHC-IYKKDKKLFFKKIFKIGE 68

Query: 76  QTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTY 130
             K   +  +   I+      +I++   +G+  I    T  T+        +  +  + +
Sbjct: 69  SNKLKKLYVLIGMIRPIVAKRIIKELASIGIYKIFFFNTELTEKSYLNSKIFKNNDFKKH 128

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
            I  A Q +I  LP I     L+  LK         F  +    +NS + L  I  I N 
Sbjct: 129 LIDGAMQGEITYLPKIKIMKNLKDSLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNA 185

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           AI++GPE G+  +EK+ +    F +  S+    LR++TA +AA +++ A
Sbjct: 186 AIIVGPERGFTEKEKQLISQYNF-SSYSISTNTLRTETATIAA-SIITA 232


>gi|77456607|ref|YP_346112.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           Pf0-1]
 gi|77380610|gb|ABA72123.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 83.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90
           ++  V R + GD++ +         +++  +            +    +  +  + +  +
Sbjct: 26  HMQEVHRSEVGDSLRVGCIGGLMGSAELLRLDAGEAELRVNLDQPPPAKLPLTLVLALPR 85

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPF 145
              L  + Q    MG+  +  V +   + + +       D +R   I   EQ     LP 
Sbjct: 86  PKMLRRVFQTVATMGVSKVILVNSYRVEKSFWQTPFLEPDAIREQLILGLEQARDTVLPE 145

Query: 146 IYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           I      +  +++      D    +V         N      A+     V + IGPEGG+
Sbjct: 146 IIIEKRFKPFVEDRLPAITDGTLGLVGHP-----GNFPPCPRALNEP--VTLAIGPEGGW 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              E + L     + P+ LG RILR +TA  A +A +
Sbjct: 199 IPYEIDLLAKAG-LQPVQLGERILRVETAVTALLARL 234


>gi|152986036|ref|YP_001351129.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PA7]
 gi|150961194|gb|ABR83219.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 235

 Score = 83.0 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 24/238 (10%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK---ISYVGKSIRFKV 69
           D       +      +  +L  V R + GD + +  G+ G W+ +   +    +    +V
Sbjct: 8   DADFVSADRAVLHDRRLRHLHEVHRAENGDTLRV--GRLGGWMGEGRLLQLDAREATLEV 65

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMD---- 125
            +      K   +  + +  +   L  ++Q    MG+  +  + +   + + +       
Sbjct: 66  RFDQPPPAKLP-ITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDP 124

Query: 126 -RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
             +R   +   EQ     LP I      +  +++              GS   +      
Sbjct: 125 PAIRENLVLGLEQARDTVLPEIIVEKRFKPFVEDRLPAL-------AAGSLGLVGHPGPW 177

Query: 185 AHIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 178 PACPRAVEKPVTLAIGPEGGWIPYEVDKLREAG-LHPVQLGERILRVETAVTALLARL 234


>gi|260435536|ref|ZP_05789506.1| RNA methyltransferase superfamily protein [Synechococcus sp. WH
           8109]
 gi|260413410|gb|EEX06706.1| RNA methyltransferase superfamily protein [Synechococcus sp. WH
           8109]
          Length = 234

 Score = 83.0 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 10/224 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
            + + +    +  ++  VLR   GDNI +          +I  + +         ++   
Sbjct: 13  DERKVRLVDRRADHIRSVLRAAVGDNIRVGELNGDLGQGRICVLDEDAVVLEVDLNQPPP 72

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTI 132
            +     + +  +   L  + +   E G+  +  +     + +++       ++V    +
Sbjct: 73  PRHRFDIVLALPRPKVLRRLFRTVAEYGVANLHLINCARVEKSYWQSPLLAPEKVNDALL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAI 192
           +  E+      P ++        +++     + + A   C        L         A+
Sbjct: 133 AGMERASDTVAPRVHQHWRFRPFVED---QLKDLCAGRPCWMAQMGAALPLRETPAGAAV 189

Query: 193 L-IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           + +GPEGG+   E E   ++    P+ LG R L  DTA   A+A
Sbjct: 190 VMVGPEGGFVPFELELAQAV-IAQPVHLGSRTLSVDTALTTALA 232


>gi|255320315|ref|ZP_05361500.1| RNA methyltransferase, RsmE family [Acinetobacter radioresistens
           SK82]
 gi|262380512|ref|ZP_06073666.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255302754|gb|EET81986.1| RNA methyltransferase, RsmE family [Acinetobacter radioresistens
           SK82]
 gi|262297958|gb|EEY85873.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 237

 Score = 82.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 12/221 (5%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           Q  +L   L +K GD + +       +L++I  +  +       +      +  V  I +
Sbjct: 23  QVQHLHQHLNIKTGDTLKVGIRNGERYLTEIVALNDNTVQVRPLKQEQLPDKLPVTLIVA 82

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  +I  SV +G+  I  + +     +++    + ++ +Y     EQ      P
Sbjct: 83  MPRPKVLRRLIMDSVTLGVEKIILLHSYRVDKSYWQTPFLQQIESYVTLGLEQAGDTIAP 142

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204
            +      +  +++                  S + + +    P   ++IGPEGG+   E
Sbjct: 143 AVEIHKRFKPFVEDILPGLISAQQPAYVAHPYSEQAMPSSIVHP-CTVIIGPEGGFIPYE 201

Query: 205 KETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            E L        + LG RI+R++T       ++  + G  +
Sbjct: 202 IELLTQNG-CQAVHLGQRIIRTET-------VIPYVLGRLF 234


>gi|49082026|gb|AAT50413.1| PA5071 [synthetic construct]
          Length = 236

 Score = 82.6 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 26/241 (10%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKSIRFKVE 70
           D       +      +  +L  V R + GD + +  G+ G W+ +  +  +  S      
Sbjct: 8   DADFVSADRAVLHDRRLKHLHEVHRAENGDTLRV--GRLGGWMGEGRLLKLDASEATLEV 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
              +    +  +  + +  +   L  ++Q    MG+  +  + +   + + +        
Sbjct: 66  RFDQPPPAKLPITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDPA 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   +   EQ     LP I      +  +++              GS   +       
Sbjct: 126 AIRENLVLGLEQARDTVLPEIIVEKRFKPFVEDRLPAL-------AAGSLGLVGHPGPWP 178

Query: 186 HIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             P      V + IGPEGG+   E + L     + P+ LG RILR +TA    ++ + A 
Sbjct: 179 ACPRAVEKPVTLAIGPEGGWIPYEVDKLREAG-LHPVQLGERILRVETA----VSALLAR 233

Query: 241 C 241
            
Sbjct: 234 L 234


>gi|229221139|ref|YP_272667.2| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 235

 Score = 82.6 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R + GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
             +  ++  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  DSAPPEKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++              G+   +     +   
Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|15600264|ref|NP_253758.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PAO1]
 gi|107104170|ref|ZP_01368088.1| hypothetical protein PaerPA_01005243 [Pseudomonas aeruginosa PACS2]
 gi|116053218|ref|YP_793540.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894170|ref|YP_002443039.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           LESB58]
 gi|254238222|ref|ZP_04931545.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254244047|ref|ZP_04937369.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296391921|ref|ZP_06881396.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas aeruginosa
           PAb1]
 gi|313110109|ref|ZP_07796011.1| hypothetical protein PA39016_002230035 [Pseudomonas aeruginosa
           39016]
 gi|9951364|gb|AAG08456.1|AE004920_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115588439|gb|ABJ14454.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170153|gb|EAZ55664.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126197425|gb|EAZ61488.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218774398|emb|CAW30215.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
 gi|310882513|gb|EFQ41107.1| hypothetical protein PA39016_002230035 [Pseudomonas aeruginosa
           39016]
          Length = 235

 Score = 82.6 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 26/241 (10%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSK--ISYVGKSIRFKVE 70
           D       +      +  +L  V R + GD + +  G+ G W+ +  +  +  S      
Sbjct: 8   DADFVSADRAVLHDRRLKHLHEVHRAENGDTLRV--GRLGGWMGEGRLLKLDASEATLEV 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
              +    +  +  + +  +   L  ++Q    MG+  +  + +   + + +        
Sbjct: 66  RFDQPPPAKLPITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDPA 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   +   EQ     LP I      +  +++              GS   +       
Sbjct: 126 AIRENLVLGLEQARDTVLPEIIVEKRFKPFVEDRLPAL-------AAGSLGLVGHPGPWP 178

Query: 186 HIPN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
             P      V + IGPEGG+   E + L     + P+ LG RILR +TA    ++ + A 
Sbjct: 179 ACPRAVEKPVTLAIGPEGGWIPYEVDKLREAG-LHPVQLGERILRVETA----VSALLAR 233

Query: 241 C 241
            
Sbjct: 234 L 234


>gi|209878384|ref|XP_002140633.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris
           RN66]
 gi|209556239|gb|EEA06284.1| RNA methyltransferase, RsmE family protein [Cryptosporidium muris
           RN66]
          Length = 377

 Score = 82.3 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT-----YTISA 134
             +  + +  +    D ++Q +  +G+G I  V T  ++ ++ N  ++            
Sbjct: 154 PVIDLLVALPRPKVFDKVLQYAASIGVGRIIFVCTNKSEKSYLNSSKLHRESIHHSIQLG 213

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHN------CQIVFADETCGSENSLEKLHAIAHIP 188
            EQ      P +Y   +    LK    +         + AD    +  S   L    H  
Sbjct: 214 LEQACNTLFPEVYLYASWNSCLKYLRDDFLDKNTMLGIIADNKSSTIISDVGLQ--RHTG 271

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +  I +GPEGG+   E   L  L F    S+G R+L+ + AA+ A+
Sbjct: 272 SAIIAVGPEGGWSQSEIGDLIGLGF-KSCSIGSRVLKVE-AAMIAL 315


>gi|260550212|ref|ZP_05824425.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
 gi|260406740|gb|EEX00220.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
          Length = 235

 Score = 82.3 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  +          +  +   +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGVRYITEIVSMNDHEVRIRPIREEALPTKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++       +
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDQYVTLGLEQAGDTIVPEIQMYKRFKPFVEDV---LPTL 161

Query: 167 FADETCG--SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224
            ++E+    +    E+   I      ++++GPEGG+   E + L        +SLG RIL
Sbjct: 162 ISEESPAYVAHPYAEQSMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRIL 220

Query: 225 RSDTAAVAAMALVQAICGDWY 245
           R++T        +  I G  +
Sbjct: 221 RTET-------SISYILGRLF 234


>gi|78213120|ref|YP_381899.1| hypothetical protein Syncc9605_1595 [Synechococcus sp. CC9605]
 gi|78197579|gb|ABB35344.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 234

 Score = 82.3 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 10/224 (4%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
            + + +    +  ++  VLR   GD+IL+          +I  +           ++   
Sbjct: 13  DERKVRLVDRRADHIRSVLRAAVGDSILVGELGGDLGQGRICALDADAVVLEVELNQPPP 72

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTI 132
            +     + +  +   L  + +   E G+  +  +     + +++       ++V    +
Sbjct: 73  PRHRFDIVLALPRPKVLRRLFRTVAEFGVANLHLINCARVEKSYWQSPLLAPEKVNDALL 132

Query: 133 SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH-AIAHIPNVA 191
           +  E+      P ++        +++     + + A   C        L           
Sbjct: 133 AGMERASDTVAPRVHQHRRFRPFVED---QLKDLCAGRPCWMAQMGASLPLRDTPRGTAV 189

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           +++GPEGG+   E E    +    P+ LG R L  DTA  AA+A
Sbjct: 190 VMVGPEGGFVPFELELAQEV-IAQPVHLGSRTLSVDTALTAALA 232


>gi|260557926|ref|ZP_05830139.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
 gi|260408717|gb|EEX02022.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
          Length = 235

 Score = 82.3 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +        +      +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPIREELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVERI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   N  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPN--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        +SLG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|239503849|ref|ZP_04663159.1| 16S rRNA m3U1498 methyltransferase [Acinetobacter baumannii AB900]
          Length = 235

 Score = 82.3 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +        +      +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPIREEPLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   +  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        +SLG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|254429785|ref|ZP_05043492.1| conserved hypothetical protein TIGR00046, putative [Alcanivorax sp.
           DG881]
 gi|196195954|gb|EDX90913.1| conserved hypothetical protein TIGR00046, putative [Alcanivorax sp.
           DG881]
          Length = 238

 Score = 82.3 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 18/209 (8%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQS-DVQYIFSPI 89
           ++  VL + E              ++ +  +  +    VE++  S  + +  +  + +  
Sbjct: 26  HVRTVLNLAEEQQCRAGLLGGSTGMATVKSIENN-EVTVEFKPLSHPEAALPLSLLMALP 84

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILTLP 144
           +   L  ++  +  +G+  I  + +     +     +   D +R   I   EQ     LP
Sbjct: 85  RPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMILGLEQARDTCLP 144

Query: 145 FIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
            +          E  L  W  + Q + A    G   +L           V + +GPEGG+
Sbjct: 145 ELILAPRFKPFVEDSLDEWAGSGQRILAH--PGDYPTLPC----NLTEPVTLAVGPEGGW 198

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTA 229
              E + L    F    S G RILR +TA
Sbjct: 199 TPYEVDMLQRQGFACH-SFGARILRVETA 226


>gi|325068582|ref|ZP_08127255.1| hypothetical protein AoriK_12206 [Actinomyces oris K20]
          Length = 130

 Score = 81.9 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQS 73
            T    +G +  +   V R++  + + L +G     + +++  G       +  +V  + 
Sbjct: 25  GTVLMLTGPEARHAVTVKRLRAEERVDLVDGAGLRLVCEVTGAGVGGAKDRLAVRVLERV 84

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT 117
                   +  + +  K  R +  ++ + E+G+G + P  +   
Sbjct: 85  EEPEPSLRLTLVQALAKGGRDEQAVETATEVGVGLVLPWQSERC 128


>gi|331006496|ref|ZP_08329796.1| hypothetical protein IMCC1989_369 [gamma proteobacterium IMCC1989]
 gi|330419696|gb|EGG94062.1| hypothetical protein IMCC1989_369 [gamma proteobacterium IMCC1989]
          Length = 207

 Score = 81.9 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 12/169 (7%)

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
           ++       +  I +  +   +  ++Q    MG+  I  + +   + +++       D++
Sbjct: 40  TKQPPAPLPLTLIIALPRPKMIKRILQTCATMGVKDIIFLNSYRVEKSYWQTPLLQEDKI 99

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS-ENSLEKLHAIAH 186
           +   +   EQ        + P  TLE   K +  +        + G   +   +L    H
Sbjct: 100 QEQLLLGLEQGK----DTLLPKVTLEKRFKPFVEDRLPALCKTSIGLIAHPHSELPCPTH 155

Query: 187 I-PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
           +  +  ++IGPEGG+   E + + S      ++LG RILR +TA    +
Sbjct: 156 VTQHTTLVIGPEGGFIPYEVDKIQSAG-CQGITLGQRILRVETAIPVLL 203


>gi|71557556|gb|AAZ36767.1| Protein of unknown function (DUF558) family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 219

 Score = 81.5 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 18/218 (8%)

Query: 30  HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
            ++  V R + GD++ +         +++  +             +  ++  +  + +  
Sbjct: 9   KHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSLDSAPPEKLPITLLLALP 68

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLP 144
           +   L  + Q    MG+  +  + +   + + +       + +R   I   EQ     LP
Sbjct: 69  RPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDSVLP 128

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIGPEGG 199
            +      +  +++              G+   +     +   P      V + IGPEGG
Sbjct: 129 EVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPACPRAVTQPVTLAIGPEGG 181

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 182 WIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 218


>gi|330807080|ref|YP_004351542.1| hypothetical protein PSEBR_a397 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375188|gb|AEA66538.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 235

 Score = 81.5 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVE 70
           +       +   S  +  ++  V R   GD++ +  G+       +++  +         
Sbjct: 8   EADFIGPDRVVLSDRRLTHMQEVHRSAVGDSLRV--GRIGGLMGTAQVLRLEAREAELQV 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
              +    +  +  + +  +   L  + Q    MG+  +  V +   + + +       +
Sbjct: 66  TLDQPPPAKLPLTLVLALPRPKMLRRVFQTVATMGVPRVVLVNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFI-----YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
            +R   I   EQ     LP I     + P   + L    D    +V         N    
Sbjct: 126 AIREQLILGLEQARDSVLPEIIIEKRFKPFVEDRLPAMTDGTLGLVGHP-----GNYPPC 180

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             A+     V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 181 PRALTEP--VTLAIGPEGGWIPYEIDLLAKAG-LQPVQLGERILRVETAVTALLARL 234


>gi|330984759|gb|EGH82862.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 235

 Score = 81.5 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R + GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
             +   +  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  DSAPPAKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++              G+   +     +   
Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|332872822|ref|ZP_08440787.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6014059]
 gi|323519753|gb|ADX94134.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738983|gb|EGJ69845.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6014059]
          Length = 235

 Score = 81.1 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +               +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPICEELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVERI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   +  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        +SLG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|225164860|ref|ZP_03727082.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
 gi|224800529|gb|EEG18903.1| protein of unknown function DUF558 [Opitutaceae bacterium TAV2]
          Length = 169

 Score = 81.1 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 17/168 (10%)

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITR-----YTQNTHYNMDRVRTYTIS 133
              +  I    +      ++ ++  +G+ AI  V T      Y  +T ++    R + + 
Sbjct: 1   MPTITLIVGLPRPQTARKILFEATTLGVRAIHFVTTEKTDPNYASSTLWSSGEWRRHLVD 60

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFA-DETCGSENSLEKLHAIAH 186
           AA+Q     LP +    TL  +L +       D   ++     E      SL +  A   
Sbjct: 61  AAQQAFDTRLPLVTWDRTLAQILSDAVGDDVSDSPLRVALDNYEATVGLRSLTRQTAT-- 118

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAM 234
             +  + IGPE G+   +++ L +  F T   LGPR+LR +T  VAA+
Sbjct: 119 --DACVAIGPERGWGERDRQQLRAAGF-TLAHLGPRVLRVETPVVAAL 163


>gi|187917941|ref|YP_001883504.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia hermsii DAH]
 gi|119860789|gb|AAX16584.1| hypothetical protein BH0062 [Borrelia hermsii DAH]
          Length = 240

 Score = 81.1 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 23/222 (10%)

Query: 29  YHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
             ++  +L++K  +     +L  G++  +   I      + FK  ++     K   ++ I
Sbjct: 22  VKHINEILKLKNNETFKFGIL--GEEHIYSC-IYQKDTKLFFKKHHKIAKSNKLKKLKVI 78

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISAAEQCDI 140
              ++      +I     +G+  I       ++        +       Y I  A Q  I
Sbjct: 79  IGLVRPIAAKRIITHLGSIGISEIIFFNALLSEKSYSCSKLFKKKEYEKYLIEGAMQGGI 138

Query: 141 LTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
             +P +     L  +L N +++     +I+   E   S+N L  L+      N  ++IGP
Sbjct: 139 TYIPKVNIINNLIEVLNNTEYDKSDTTKILLERE---SKNKLVDLNI--ETKNTVVIIGP 193

Query: 197 EGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMALV 237
           E G+ ++E   +    F    +S    ILR++TA + A  ++
Sbjct: 194 ERGFITKEINLIKEYDFNAYNIS--SNILRTETATIVASTII 233


>gi|257482904|ref|ZP_05636945.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009557|gb|EGH89613.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 235

 Score = 81.1 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R + GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
             +   +  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  DSAPPAKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP I      +  +++              G+   +     +   
Sbjct: 128 REQLILGLEQARDSVLPEIIIEKRFKPFVEDR-------LPHMAAGTLGLVGHPGDLPAC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|169794371|ref|YP_001712164.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           AYE]
 gi|213159050|ref|YP_002321049.1| hypothetical protein AB57_3759 [Acinetobacter baumannii AB0057]
 gi|301347119|ref|ZP_07227860.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           AB056]
 gi|301512361|ref|ZP_07237598.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           AB058]
 gi|301597507|ref|ZP_07242515.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           AB059]
 gi|332854814|ref|ZP_08435577.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013150]
 gi|332868944|ref|ZP_08438503.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013113]
 gi|169147298|emb|CAM85159.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213058210|gb|ACJ43112.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|332727816|gb|EGJ59220.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013150]
 gi|332732987|gb|EGJ64189.1| RNA methyltransferase, RsmE family [Acinetobacter baumannii
           6013113]
          Length = 235

 Score = 81.1 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +        +      +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPIREELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   +  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYATLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        +SLG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|119952865|ref|YP_945074.1| 16S ribosomal RNA methyltransferase RsmE [Borrelia turicatae
           91E135]
 gi|119861636|gb|AAX17404.1| hypothetical protein BT0062 [Borrelia turicatae 91E135]
          Length = 240

 Score = 81.1 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 92/236 (38%), Gaps = 23/236 (9%)

Query: 15  PLCIKTQGKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEY 71
           P  +K     +  +  ++  +L++K  +     ++  G++  +          + F+  +
Sbjct: 8   PDELKNGLILNDSRVKHINEILKLKNNETFKFGII--GEEHIYSCVYQK-DVKLFFRKNH 64

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDR 126
           +     K   ++ I   ++      +I     MG+  +       ++        +    
Sbjct: 65  KIAKSNKLKKLKVIIGLVRPIAAKRIITHLGSMGISELIFFNALLSEKSYSCSKLFKERE 124

Query: 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLH 182
              Y I  A Q  I  +P +     L  +LKN ++      +I+   E   S+N L  L+
Sbjct: 125 YEKYLIEGAMQGGITYIPKVNILNNLREVLKNTEYEGSNTTKILLERE---SKNKLVDLN 181

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPF-VTPLSLGPRILRSDTAAVAAMALV 237
                 N  ++IGPE G+ ++E   +    F    +S    ILR++TA + A A++
Sbjct: 182 I--KTKNTVVIIGPERGFITKEINLIKEYNFNAYNIS--SNILRTETATIVASAII 233


>gi|221503309|gb|EEE29007.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 232

 Score = 80.7 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 104 MGMGAIRPVITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           +G+G +  V +   +    +   + R  +     +  EQ     +P +    + + L+  
Sbjct: 64  LGVGRLLLVCSERVEKGYLSSPKLSRENIEKQLQTGLEQGVSTRVPEVQVFASWQALMVF 123

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
              +     +  T  S+   + + A +    V + IGPEGG+  +E E L         S
Sbjct: 124 LRRSR----SPCTFHSQQKDKIIQAHS-GGRVLVAIGPEGGWIDQEVEELRETQGFEFFS 178

Query: 219 LGPRILRSDTAAVAAMA 235
           LG R+LR +TA V+ +A
Sbjct: 179 LGDRVLRCETAVVSVIA 195


>gi|320322091|gb|EFW78187.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330808|gb|EFW86782.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330872024|gb|EGH06173.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 235

 Score = 80.7 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R + GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGSAELLRLEPHEAELRVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
             +  ++  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  DSAPPEKLPITLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++              G+   +     +   
Sbjct: 128 REQLILGLEQARDSVLPEVIIEKRFKPFVEDRLPQM-------AAGTLGLVGHPGDLPAC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 181 PRAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|184159825|ref|YP_001848164.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           ACICU]
 gi|183211419|gb|ACC58817.1| uncharacterized protein conserved in bacteria [Acinetobacter
           baumannii ACICU]
 gi|322509738|gb|ADX05192.1| rsmE [Acinetobacter baumannii 1656-2]
          Length = 235

 Score = 80.7 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +        +      +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPIREEPLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   +  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQVDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        +SLG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|302340578|ref|YP_003805784.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM
           11293]
 gi|301637763|gb|ADK83190.1| protein of unknown function DUF558 [Spirochaeta smaragdinae DSM
           11293]
          Length = 257

 Score = 80.7 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 92/231 (39%), Gaps = 18/231 (7%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNIL--LFNG-KDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
                D+  +L  +L +K+GD +   + +G +    + +I   G  + F  +   + ++ 
Sbjct: 21  LPLFDDRARHLLKILGVKKGDVVRAGIADGPRGKASVDEIQEDGIVLSFVPDSGEQEESA 80

Query: 79  ---QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-----RTY 130
                 +  +   ++      +++++  +G+ +I  V T   + ++             Y
Sbjct: 81  GIGPFLLDLVVGQVRPICAKRILREAAMLGVSSISVVGTDLGERSYREAKLWSSGEAERY 140

Query: 131 TISAAEQCDILTLPFIYPPTTLEFLLKN--WDHNCQIVFADETCGSENSLEKLHAIAHIP 188
            I    Q     +P +    +L+  L +  +      +  D    S+   E    +  + 
Sbjct: 141 LIDGVVQAAATAIPALRLFESLDHYLSDAIFSPEYLRITLDNVAPSKPLFEFAGKLPAV- 199

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
              + +G E G+   E++      +     LG RILR++TA+ AA+A++ A
Sbjct: 200 ---LAVGSERGWSDRERKLFSKAGWSFA-GLGGRILRTETASTAALAILLA 246


>gi|70733923|ref|YP_257563.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           Pf-5]
 gi|68348222|gb|AAY95828.1| Protein of unknown function (DUF558) family [Pseudomonas
           fluorescens Pf-5]
          Length = 235

 Score = 80.7 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           ++  V R+  GD++ +  G+       +++  +  +         +    +  +  + + 
Sbjct: 26  HMQDVHRVAVGDSLRV--GRIGGLMGSAQVLRLEPAEAELQVTLDQPPPAKLPLTLVLAL 83

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTL 143
            +   L  + Q    MG+  +  V +   + + +       + +R + +   EQ     L
Sbjct: 84  PRPKMLRRVFQTIATMGVPRLVLVNSYRVEKSFWQTPFLEPETIREHLVLGLEQARDTVL 143

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIGPEG 198
           P +      +  +++            + G+   +         P      V + IGPEG
Sbjct: 144 PDVLIEKRFKPFVEDRLPAL-------SAGTLGLVGHPGPYPPCPRGLDQAVTLAIGPEG 196

Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           G+   E + L     + P+ LG RILR +TA  A ++ +
Sbjct: 197 GWIPYEIDLLGKAG-LQPVQLGERILRVETAVTALLSRL 234


>gi|297569051|ref|YP_003690395.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924966|gb|ADH85776.1| protein of unknown function DUF558 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 264

 Score = 80.7 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 91/264 (34%), Gaps = 36/264 (13%)

Query: 10  LFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRF 67
           + V+              +  +++ +L+ + GD +   + +G  G   +++  V +    
Sbjct: 4   ILVEHHEITADTITLRDRRAEHISRILKSRPGDLLRAGIIDGPMG--SAQVLAVARREVT 61

Query: 68  KVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HY 122
                 +    ++    I +  +   L  ++ ++  MG+  I  +  R  + +       
Sbjct: 62  IRLDCRQEPPAKAATALILAIPRPIMLKRVLAQAAAMGVQRIMLINARRVEKSFFHSSQL 121

Query: 123 NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW------DHNCQIVFADETCGSEN 176
           +   +R   +   EQ     LP +         +++       +   +++        E 
Sbjct: 122 SPAGIRAALLQGLEQAGDTRLPEVTLHPRFRPFIEDQLPPPRPNGPLRLLAHPTKKPVEM 181

Query: 177 SLEKLHAIAHIPN--------------------VAILIGPEGGYHSEEKETLHSLPFVTP 216
           +   L      P+                      + IGPEGG+   E        F TP
Sbjct: 182 ATASLRQSETGPDDPLPAGNLRGAAPAAVPARRQMLAIGPEGGWVDFEINCFAKQGF-TP 240

Query: 217 LSLGPRILRSDTAAVAAMALVQAI 240
            S GPRILR DTA    +AL +A+
Sbjct: 241 FSWGPRILRVDTAVPVLLALAEAL 264


>gi|293610593|ref|ZP_06692893.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826937|gb|EFF85302.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 235

 Score = 80.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 14/210 (6%)

Query: 40  EGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQ 99
            G N+ +       + ++I  + +               +  V  I    +   L  +I 
Sbjct: 35  VGQNLKVGVRNGARYTTEIVSMNEQEVCIRPITEEVVPAKLPVHLIVGLPRPKVLRRLIM 94

Query: 100 KSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156
            SV +G+  I  + +     +++    + ++  Y     EQ     +P I      +  +
Sbjct: 95  DSVTLGVERISLIHSYRVDKSYWQTPFLQQLDNYVTLGLEQAGDTIVPEIQLYKRFKPFV 154

Query: 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVT 215
           ++   N  ++  +      +   +     +IP+   +++GPEGG+   E + L       
Sbjct: 155 EDVLPN--LISKESPAYVAHPYAEQSMPVNIPHACSVVVGPEGGFIPYEIDLLTKNG-CQ 211

Query: 216 PLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            +SL  RILR++T        +  I G  +
Sbjct: 212 AVSLCNRILRTET-------SISYILGRLF 234


>gi|237840771|ref|XP_002369683.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|211967347|gb|EEB02543.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
          Length = 232

 Score = 80.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 104 MGMGAIRPVITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           +G+G +  V +   +    +   + R  +     +  EQ     +P +    + + L+  
Sbjct: 64  LGVGRLLLVCSERVEKGYLSSPKLSRENIEKQLQTGLEQGVSTRVPEVQVFASWQALMVF 123

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
              +     +  T  S+   +K+        V + IGPEGG+  +E E L         S
Sbjct: 124 LRRSR----SPCTFHSQQ-KDKIMQAHSGGRVLVAIGPEGGWIDQEVEELRETQGFEFFS 178

Query: 219 LGPRILRSDTAAVAAMA 235
           LG R+LR +TA V+ +A
Sbjct: 179 LGDRVLRCETAVVSVIA 195


>gi|203283988|ref|YP_002221728.1| hypothetical protein BDU_66 [Borrelia duttonii Ly]
 gi|201083431|gb|ACH93022.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 239

 Score = 80.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 25/236 (10%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
              +  +  ++  +L++K  D     ++  G++  +   I +    + FK  ++     K
Sbjct: 15  IVLNDPRVKHITEILKLKNNDTFKFGII--GEEHIYSC-IYHKDVRLFFKKNHKISKSNK 71

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133
            + ++ +   I+      +IQ    +G+  I       ++        +       Y I 
Sbjct: 72  LTKIKVVIGFIRPIAAKRIIQHLGSIGISEIIFFNALLSEKSYSHSKLFREKEYEKYLIK 131

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIA-HIP 188
            A Q  I  +P I     L  +L+N   N     +I+         NS  KL  +     
Sbjct: 132 GAMQGGITYIPKIKIFNNLIEVLENIKDNNFNTTKILL------ERNSKNKLIDLNIKTE 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVT-PLSLGPRILRSDTAAVAAMALVQAICGD 243
           NV ++IGPE G+ ++E   +    F T  +S  P IL+++TA + A  ++ +   D
Sbjct: 186 NVVVIIGPERGFITKETNLIKKYNFNTYNIS--PNILKTETATIVASTIITSKIND 239


>gi|221482899|gb|EEE21230.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 232

 Score = 80.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 104 MGMGAIRPVITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           +G+G +  V +   +    +   + R  +     +  EQ     +P +    + + L+  
Sbjct: 64  LGVGRLLLVCSERVEKGYLSSPKLSRENIEKQLQTGLEQGVSTRVPEVQVFASWQALMVF 123

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
              +     +  T  S+   + + A +    V + IGPEGG+  +E E L         S
Sbjct: 124 LRRSR----SPCTFHSQQKDQIMQAHS-GGRVLVAIGPEGGWIDQEVEELRETQGFEFFS 178

Query: 219 LGPRILRSDTAAVAAMA 235
           LG R+LR +TA V+ +A
Sbjct: 179 LGDRVLRCETAVVSVIA 195


>gi|309799315|ref|ZP_07693561.1| YqeU [Streptococcus infantis SK1302]
 gi|308117055|gb|EFO54485.1| YqeU [Streptococcus infantis SK1302]
          Length = 55

 Score = 79.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
             + GPEGG    E E+  +   V    LGPRILR++TA +  ++ +  + 
Sbjct: 2   LFIFGPEGGLSPAEIESFEAKGAVLA-GLGPRILRAETAPLYTLSALSVLL 51


>gi|159490624|ref|XP_001703273.1| hypothetical protein CHLREDRAFT_205517 [Chlamydomonas reinhardtii]
 gi|158280197|gb|EDP05955.1| hypothetical protein CHLREDRAFT_205517 [Chlamydomonas reinhardtii]
          Length = 425

 Score = 79.6 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 58/174 (33%)

Query: 41  GDNILLFNGKDGEWLSKISYVGKSIRFK---------------------------VEYQS 73
           GD + L +G+    +  ++   K   +                                 
Sbjct: 82  GDRVELCDGRGNVAVGVVTGTDKQRVWVSAHMILGLTTRPEDGAAGPTGHVSTEGAASHQ 141

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY----------- 122
           R    +  +    + +K  R +++++K+ E+G   + P++T  +Q               
Sbjct: 142 RWSGPRWVLAVACTTLKGGRAEWLVEKATELGAFMLVPLVTERSQAGGKAKFRTSRSGGG 201

Query: 123 --------------------NMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156
                                  R+    I+A +Q        + PPT L  LL
Sbjct: 202 GGGGGSDLDWGSDGGGGDDYQPGRLERVAIAATKQSLRPHALALVPPTPLADLL 255



 Score = 69.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
            + +GPEG +   E   L       P+ LG   LR++TAA+  ++ 
Sbjct: 376 VLFVGPEGDFTPAELAALVEAG-AQPVGLGVNRLRTETAAIGLLSA 420


>gi|320538483|ref|ZP_08038346.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
 gi|320144654|gb|EFW36407.1| RNA methyltransferase, RsmE family [Treponema phagedenis F0421]
          Length = 249

 Score = 79.6 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 24/222 (10%)

Query: 31  YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           ++  +L++   D+    + +G+ G   ++I    +         +      + +  I   
Sbjct: 27  HIKKILKLGVHDSFKAGIIDGEKGF--AEIIRFDEKELTARFKPNEKGLALAPITLILGF 84

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQNTHYNMDRVRTYTISAAEQCDILTL 143
            +  +L  +++    +G+  +    T      Y Q+       +R   I    Q     +
Sbjct: 85  PRPIQLRRILRDISGLGIAELWLTGTVLGEKSYMQSELAQESEIRRLLIDGCSQAGQTII 144

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL--------IG 195
           P +    +L  L K                 +   + L     + ++++         IG
Sbjct: 145 PKVSGFDSLRSLFKTKRAEVS------AKNKKLLFDVLKTSTALSDISVFDTSDFLLAIG 198

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            E G+  EE+E  +   F T + +G RILR++TA  AA A +
Sbjct: 199 SERGWTEEERELFYEQNF-TAVGMGARILRTETAVCAACAAI 239


>gi|203287531|ref|YP_002222546.1| hypothetical protein BRE_65 [Borrelia recurrentis A1]
 gi|201084751|gb|ACH94325.1| uncharacterized conserved protein [Borrelia recurrentis A1]
          Length = 239

 Score = 79.6 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 25/236 (10%)

Query: 22  GKASGDQYHYLAHVLRMKEGDNI---LLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
              +  +  ++  +L++K  D     ++  G++  +   I +    + FK  ++     K
Sbjct: 15  IVLNDPRVKHITEILKLKNNDTFKFGII--GEEYIYSC-IYHKDVRLFFKKNHKISKSNK 71

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133
            + V+ +   I+      +IQ    +G+  I    +  ++        +       Y I 
Sbjct: 72  LTKVKVVIGFIRPIAAKRIIQHLGSIGISEIIFFNSLLSEKSYSHSKLFREKEYEKYLIK 131

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHN----CQIVFADETCGSENSLEKLHAIA-HIP 188
            A Q  I  +P I     L  +L+N   +     +I+         NS  KL  +     
Sbjct: 132 GAMQGGITYIPKIKIFNNLIEVLENIKDDNFNTTKILL------ERNSKNKLIDLNIKTE 185

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVT-PLSLGPRILRSDTAAVAAMALVQAICGD 243
           NV ++IGPE G+ ++E   +    F T  +S  P IL+++TA + A  ++ +   D
Sbjct: 186 NVVVIIGPERGFITKETNLITKYNFNTYNIS--PNILKTETATIVASTIITSKMND 239


>gi|46902|emb|CAA48688.1| unnamed protein product [Streptomyces coelicolor A3(2)]
          Length = 111

 Score = 79.2 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY- 71
              L    +    G +  +   V R++ G++++L +G+       +       R  V   
Sbjct: 13  PQDLPAG-EYVLDGPEGRHAVSVKRLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVP 71

Query: 72  --QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
                   +Q  +  + +  K +R +  ++   E+G+ AI
Sbjct: 72  GGVREEPAEQPRITVVQALPKGDRGELAVETMTEVGVDAI 111


>gi|327478995|gb|AEA82305.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri DSM
           4166]
          Length = 235

 Score = 79.2 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 16/218 (7%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           ++  V R++  +++ +  G+        ++  +  +         +    +  V  + + 
Sbjct: 26  HMRDVHRVEVNESLRV--GRLGGQMGSGRLLRLDATEAELQVSFDQPPPAKLPVTLLLAL 83

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTL 143
            +   L  ++Q    MG+  +  + +   + + +         +R   I   EQ     L
Sbjct: 84  PRPKMLRRVLQTVAAMGVPRLVLLNSYRVEKSFWQTPFLEPAAIREQLILGLEQARDTVL 143

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +      +  +++                 +      A+     V + IGPEGG+   
Sbjct: 144 PEVIIEKRFKPFVEDRLPQLAAGTCGLVGHPGDFPTCPRAVGGP--VTLAIGPEGGWIPY 201

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           E E   +   + P+ LG RILR +TA    ++ + A  
Sbjct: 202 EVEKFTAAG-LQPVQLGERILRVETA----VSALLARL 234


>gi|257454846|ref|ZP_05620097.1| RNA methyltransferase, RsmE family [Enhydrobacter aerosaccus SK60]
 gi|257447779|gb|EEV22771.1| RNA methyltransferase, RsmE family [Enhydrobacter aerosaccus SK60]
          Length = 238

 Score = 79.2 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 26/223 (11%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYV-GKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           +L  VL++  GD + +         + +S +   SI     + + +   +  +  I +  
Sbjct: 24  HLKQVLKVTLGDTVKVGIKNGHLGTAVVSNIHDSSIELSQIHCTIAPPAKLPLTVILAIP 83

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLPFI 146
           +   L  +      MG+  I  V +  ++ +++    + ++  Y     +Q        +
Sbjct: 84  RPKVLRRLFLDMTAMGVQHIILVNSYRSEKSYWQTPFLTQLDNYIHEGLQQA----CDTV 139

Query: 147 YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVA-------ILIGPEGG 199
            P  +L+  LK +  +          G +  L   +A      V        ++IG EGG
Sbjct: 140 SPTVSLKKRLKPFVEDELPAL---IAGKQAILTHPYANEQFTQVWDNALPHVLVIGAEGG 196

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +   E E   +        +G RILR++ A       V  +CG
Sbjct: 197 WIDYEVELFKTAG-CQAAHIGNRILRTENA-------VSVLCG 231


>gi|15639026|ref|NP_218472.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025266|ref|YP_001933038.1| 16S ribosomal RNA methyltransferase RsmE [Treponema pallidum subsp.
           pallidum SS14]
 gi|8928461|sp|O83075|RSME_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase E;
           AltName: Full=16S rRNA m3U1498 methyltransferase
 gi|3322287|gb|AAC65027.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017841|gb|ACD70459.1| hypothetical protein TPASS_0032 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059447|gb|ADD72182.1| ribosomal RNA small subunit methyltransferase E [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 266

 Score = 79.2 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 31  YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIFS 87
           ++  VL++  G      + NG  G   ++IS   +     V E           +  +  
Sbjct: 27  HIKRVLKLSAGACFKAGIINGVKG--SARISLATEKYLVAVFEKLEYEDCALFPLHLVIG 84

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYTISAAEQCDILT 142
             +  +L  +++    +G+ +I  V T   + ++ +     M+++ TY I   EQ     
Sbjct: 85  FPRPIQLRRILRDVSSLGISSIHLVGTELGERSYLDSGLAHMEKMHTYLIRGLEQAGGTK 144

Query: 143 LPFIYPPTTLEFLLKNWDHNC------QIVFADETCGSENSLEKLHAIAHIPNV-AILIG 195
           LP I    ++        H        +++       ++N+L  L + A   +V  I IG
Sbjct: 145 LPLITVSESVRTFCSQHTHILGDSTHQKLIL-----DTKNTLTDLGSAALRGDVLWIAIG 199

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
            E G+   E+    ++ F   + +G R LR++T
Sbjct: 200 SERGWTESERLLFSAMGF-RAVDMGRRTLRTET 231


>gi|581636|emb|CAA48689.1| unnamed protein product [Streptomyces coelicolor A3(2)]
          Length = 107

 Score = 79.2 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY- 71
              L    +    G +  +   V R++ G++++L +G+       +       R  V   
Sbjct: 9   PQDLPAG-EYVLDGPEGRHAVSVKRLRAGEDVVLTDGRGHWAEGTVKAAEGKDRLVVTVP 67

Query: 72  --QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
                   +Q  +  + +  K +R +  ++   E+G+ AI
Sbjct: 68  GGVREEPAEQPRITVVQALPKGDRGELAVETMTEVGVDAI 107


>gi|169634747|ref|YP_001708483.1| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           SDF]
 gi|169153539|emb|CAP02707.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 235

 Score = 78.8 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +        +      +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPIREEPLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTYTI---SAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   N  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQVDNYFTLGLEQAGDTIVPEIQLYKRFKPFVEDILPN--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        +SLG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMSLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|146280727|ref|YP_001170880.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas stutzeri
           A1501]
 gi|145568932|gb|ABP78038.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 235

 Score = 78.8 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 16/218 (7%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP 88
           ++  V R++  +++ +  G+        ++  +  +         +    +  V  + + 
Sbjct: 26  HMRDVHRVEVNESLRV--GRLGGQMGSGRLLRLDATEAELQVSFDQPPPAKLPVTLLLAL 83

Query: 89  IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTL 143
            +   L  ++Q    MG+  +  + +   + + +         +R   I   EQ     L
Sbjct: 84  PRPKMLRRVLQTVAAMGVPRLVLLNSYRVEKSFWQTPFLEPAAIREQLILGLEQARDTVL 143

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
           P +      +  +++                 +      A+     V + IGPEGG+   
Sbjct: 144 PEVIIEKRFKPFVEDRLPQLAAGTCGLVGHPGDFPACPRAVGGA--VTLAIGPEGGWIPY 201

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           E E   +   + P+ LG RILR +TA    ++ + A  
Sbjct: 202 EVEKFTAAG-LQPVQLGERILRVETA----VSALLARL 234


>gi|229577085|ref|YP_001086303.2| 16S ribosomal RNA methyltransferase RsmE [Acinetobacter baumannii
           ATCC 17978]
 gi|193078652|gb|ABO13701.2| hypothetical protein A1S_3312 [Acinetobacter baumannii ATCC 17978]
          Length = 235

 Score = 78.0 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 73/200 (36%), Gaps = 14/200 (7%)

Query: 50  KDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAI 109
               ++++I  + +               +  V  I +  +   L  +I  SV +G+  I
Sbjct: 45  NGARYITEIVSMNEHEVRIRPICEELLPAKLPVHLIVALPRPKVLRRLIMDSVTLGVEKI 104

Query: 110 RPVITRYTQNTHYNMDRVRTY---TISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIV 166
             + +     +++    ++          EQ     +P I      +  +++   +  ++
Sbjct: 105 SLIHSYRVDKSYWQTPFLQQIDNYVTLGLEQAGDTIVPEIQLYKRFKPFVEDVLPS--LI 162

Query: 167 FADETCGSENSLEKLHAIAHIPNVA-ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225
             +      +   +     +I +   +++GPEGG+   E + L        ++LG RILR
Sbjct: 163 TQETPAYVAHPYAEQRMPINISHACSVVVGPEGGFIPYEVDLLIKNG-CQAMNLGNRILR 221

Query: 226 SDTAAVAAMALVQAICGDWY 245
           ++T        +  I G  +
Sbjct: 222 TET-------SISYILGRLF 234


>gi|254447010|ref|ZP_05060477.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium
           HTCC5015]
 gi|198263149|gb|EDY87427.1| conserved hypothetical protein TIGR00046 [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score = 78.0 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 31/227 (13%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
            + + S  ++ ++  V R + GD + L   NG  G   + +  +                
Sbjct: 16  QRIRLSDRRFEHITKVHRAQVGDRLKLGVINGSIG--SAIVEDLQSHSVELSYALDTPPP 73

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA-- 135
               +  I +  +   L   +Q    +G   I  + T   + ++      ++  + +A  
Sbjct: 74  PALPLTLILALPRPKVLRRTLQNLSSLGAKHIILINTWRVEKSY-----WQSPLLESASI 128

Query: 136 --------EQCDILTLPFIYPPTTLEFLLKN-----WDHNCQIVFADETCGSENSLEKLH 182
                   EQ     +P I      +  +++        + ++V   +  G+      L 
Sbjct: 129 EHSLQLGLEQAVDTIMPTISQRKRFKPFVEDELGALAKESVKLVAHPK--GNAPCPMNLG 186

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           A A      + IGPEGG+   E E L S+ F   +++G RIL  +TA
Sbjct: 187 AQAS----TLAIGPEGGFIPYEIEKLESIGF-QAVNMGQRILTVETA 228


>gi|78184910|ref|YP_377345.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9902]
 gi|78169204|gb|ABB26301.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 242

 Score = 78.0 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 18/234 (7%)

Query: 18  IKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
                    ++  ++  VL+   GD + +      +   +++ +   +            
Sbjct: 14  DDHSVLLCDERAIHICDVLKSTVGDQLRVGLRDGLQGQGEVTSIQNGVVHLTVDLHDPSP 73

Query: 78  KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTI 132
            +     + +  +   L  + +   E G+  +  + +   + +++       D +    +
Sbjct: 74  PRHRFDLVLALPRPKMLRRIFRSIAEFGVQNLYLINSARVEKSYWQSPLLKADAIDQALV 133

Query: 133 SAAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP 188
           +  E+      P ++         E  L           AD           L   +  P
Sbjct: 134 AGMERSRDTIAPRVHLCPRFRPFMEDRLTQICAGRPCWIADMEAPV-----ALSDCSSTP 188

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
            V ++IGPEGG+   E +          ++LG R+L  DTA    +A  QA+ G
Sbjct: 189 AV-VMIGPEGGFVPFEIQLAEKT-VAQRVNLGTRVLSVDTALTTVLA--QALPG 238


>gi|167036058|ref|YP_001671289.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida GB-1]
 gi|166862546|gb|ABZ00954.1| protein of unknown function DUF558 [Pseudomonas putida GB-1]
          Length = 235

 Score = 77.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 37  RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDY 96
           R+  GDN+ +         + +  + K          +    +  +  I +  +   L  
Sbjct: 32  RVAVGDNLRVGRINGLMGKATVLRLEKHEAELEVAFDQPPPAKLPLTLILAVPRPKMLRR 91

Query: 97  MIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPPTT 151
           + Q    +G+  +  V +   + + +       + +R   I   EQ     LP +     
Sbjct: 92  LFQTVATLGVSRLILVNSYKVEKSFWQTPFLQPESIRENLILGLEQARDTVLPEVIIEKR 151

Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGGYHSEEKETLH 209
            +  ++    +     A  T G         A        V + IGPEGG+   E E L 
Sbjct: 152 FKPFVE----DRLPAIATGTLGLVGHPGPYPACPRAVEQAVTLAIGPEGGWIPYEIELLG 207

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALV 237
               + P+ LG RILR +TA  A ++ +
Sbjct: 208 KAG-LAPVQLGDRILRVETAVTALLSRI 234


>gi|330720102|gb|EGG98513.1| hypothetical protein TIGR00046 [gamma proteobacterium IMCC2047]
          Length = 236

 Score = 77.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 8/222 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
                     + S  ++  +  V   + GD + +          +I+ + +         
Sbjct: 8   PQDFIDPQHARLSDARFKQILQVHGSQIGDQVRVGELNGLMGSGRITDLNEQAVTLAVQL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MD--RV 127
            +    +  +  + +  +   +  + +   E+G+  +  + +   + + +    +D  +V
Sbjct: 68  DQQPPAKLPLTVVLALPRPKMIRRIFRSLAELGVEQLIVINSYKVEKSFWQSPALDPVKV 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R Y +   +Q     LP +      +  ++  D    I+       +  +L +       
Sbjct: 128 RQYLVDGLQQAKDTILPQVQFHKRFKPFVE--DELPNIIAGSRALIAHPALGEPCPHQLN 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + + +GPEGG+   E E L ++ F   + LG RIL+ + A
Sbjct: 186 ERITLAVGPEGGFIPYEVEKLQAIGF-EGVDLGERILKVENA 226


>gi|116072537|ref|ZP_01469804.1| hypothetical protein BL107_12136 [Synechococcus sp. BL107]
 gi|116065059|gb|EAU70818.1| hypothetical protein BL107_12136 [Synechococcus sp. BL107]
          Length = 242

 Score = 76.5 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 14/219 (6%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIK 90
           ++  VL+   GD + +      +   +++ +             S   +     + +  +
Sbjct: 27  HICDVLKSTVGDQLRVGLRDGLQGQGEVTSIQDGAVQLSVELHDSPPPRHHFDLVLALPR 86

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTISAAEQCDILTLPF 145
              L  + +   E G+  +  + +   + +++      +D +    ++  E+      P 
Sbjct: 87  PKMLRRIFRAVAEFGVQNLYLINSARVEKSYWQSPLLQVDAIDQALVAGMERSRDTIAPR 146

Query: 146 IYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN--VAILIGPEGGYHSE 203
           ++        +++       + A   C   + +E   A++   +    ++IGPEGG+   
Sbjct: 147 VHLCPRFRPFVED---QLIQICAGRPCWIAD-MEAPIALSDCSSTPAVVMIGPEGGFVPF 202

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           E +   +      ++LG RIL  DTA    +A  QA+ G
Sbjct: 203 EIQLAETT-IAQRINLGTRILSVDTALTTVLA--QALPG 238


>gi|226533423|ref|NP_001146141.1| hypothetical protein LOC100279709 [Zea mays]
 gi|219885933|gb|ACL53341.1| unknown [Zea mays]
          Length = 100

 Score = 76.1 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 144 PFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
             +  P  +  LL     +     A  +  +      L   +   +  ++IGPEG + +E
Sbjct: 1   MSLKSPIQIRHLLPVVSQSKLAFLA--SAEAPPFFSVLPESSIEQSGLLIIGPEGDFTAE 58

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           E  +L S     P+ LGP  LR +TA ++ ++ +  +  D
Sbjct: 59  EVHSLKSAGAA-PVGLGPCRLRVETATISLLSALM-LWSD 96


>gi|88808326|ref|ZP_01123836.1| hypothetical protein WH7805_01512 [Synechococcus sp. WH 7805]
 gi|88787314|gb|EAR18471.1| hypothetical protein WH7805_01512 [Synechococcus sp. WH 7805]
          Length = 236

 Score = 76.1 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 10/222 (4%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
            + + S  +  ++  VLR ++GD + +           I  +  +              +
Sbjct: 16  QRVRLSDRRAEHIRQVLRSQQGDTLRVGLLGGQLGTGWIEAIDANAVLMTVQLLDPPPAR 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-RTYTISA---- 134
                + +  +   L  +++   E G G +  + +     +++    +       A    
Sbjct: 76  HRFDLVLALPRPKMLRKILRTVAEFGAGHLHLIHSARVDRSYWQSPLLSEAKVDEALRMG 135

Query: 135 AEQCDILTLPFIYPPTTLEFLLKN-WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAIL 193
            E+     +P ++        +++     CQ                L A+A  P V ++
Sbjct: 136 MERSRDTLIPQVHRHRLFRPFVEDRLPGICQGRPCWIAHQEAGL--GLSAVATQPAV-VM 192

Query: 194 IGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235
           IGPEGG+   E E    +     + LG R L  DTA    +A
Sbjct: 193 IGPEGGFVPFELELAERMG-AQRVHLGARTLSVDTALTTVLA 233


>gi|307719330|ref|YP_003874862.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM
           6192]
 gi|306533055|gb|ADN02589.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM
           6192]
          Length = 190

 Score = 76.1 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 104 MGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           +G+  +     R ++ +      +         +  AEQ     +P +    +LE  +  
Sbjct: 52  LGVERVVVFPARLSERSYLESTLWKGGEWERCLVEGAEQGVTTRVPEVVRVRSLEEGVGV 111

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
                + V  DE  G          +A      + +GPE G+  EE+  L    FV  LS
Sbjct: 112 CGEGVRYV-CDEAVGEGGR------VARAGRYVVAVGPERGWTEEERRVLAEEGFVR-LS 163

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           LGPR+LR++ A   A+  V    G W
Sbjct: 164 LGPRMLRAEVACHVAVGRVAEGAGWW 189


>gi|148550095|ref|YP_001270197.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida F1]
 gi|148514153|gb|ABQ81013.1| protein of unknown function DUF558 [Pseudomonas putida F1]
          Length = 235

 Score = 74.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 8/230 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +   +  ++ ++  + R+  GDN+ +         + +  + K         
Sbjct: 8   EADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMGKATVLRLEKHEAELEVAF 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
            +    +  +  + +  +   L  + Q    +G+  +  + +   + + +       + +
Sbjct: 68  DQQPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPESI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++      I                   A  
Sbjct: 128 RENLILGLEQARDTVLPEVIIEKRFKPFVEDRLPT--IAAGTLGLVGHPGPYPACPRAVE 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             V + IGPEGG+   E + L     + P+ LG RILR +TA  A ++ +
Sbjct: 186 QTVTLAIGPEGGWIPYEIDLLGKAG-LAPVQLGDRILRVETAVTALLSRI 234


>gi|261886253|ref|ZP_06010292.1| 16S ribosomal RNA methyltransferase RsmE [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 138

 Score = 74.2 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGE-WLSKISYVGKSIRFKV 69
           F+          +  GD + YL    R   GD I + N KDG  ++ +I    +    ++
Sbjct: 3   FLYDENAKNDIPEIKGDSFKYL-KARRQNVGDRIDIRNLKDGYSYIYEIINSERKATCEL 61

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-NMDRVR 128
            ++S  ++  SD+   ++ +  + ++  +    E+G+  I  V T ++Q     + DR R
Sbjct: 62  VFKSLPKSLDSDLVLAWAVVDPSVIEKTLPSLNELGVKKIIFVYTDFSQRNIKLDFDRFR 121

Query: 129 TYTISAAEQCDILTLPF 145
              I +++QC   ++  
Sbjct: 122 RILIGSSQQCGRNSIIE 138


>gi|170719632|ref|YP_001747320.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida W619]
 gi|169757635|gb|ACA70951.1| protein of unknown function DUF558 [Pseudomonas putida W619]
          Length = 235

 Score = 74.2 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVE 70
           +       +   +  ++ ++  + R+  GD++ +  G+       + +  + +       
Sbjct: 8   EADFVSADRVVLADRRFTHMQEIHRVVVGDSLRV--GRINGLMGTATVVRLAQHEAELEV 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMD 125
              +    +  +  + +  +   L  + Q    +G+  +  V +   + + +     N +
Sbjct: 66  GFDQPPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVQRLILVNSYKVEKSFWQTPFLNPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW-----DHNCQIVFADETCGSENSLEK 180
            +R   I   EQ     LP +      +  +++      D    +V      G       
Sbjct: 126 CIRDNLILGLEQARDTVLPEVVIEKRFKPFVEDRLPAIVDGTLGLV------GHPGPYPA 179

Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                  P V + IGPEGG+   E E L     + P+ LG RILR +TA  A ++ +
Sbjct: 180 CPRAVEGP-VTLAIGPEGGWIPYEVELLGKAG-LAPVQLGDRILRVETAVTALLSRI 234


>gi|219112567|ref|XP_002178035.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410920|gb|EEC50849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 333

 Score = 74.2 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 101/290 (34%), Gaps = 57/290 (19%)

Query: 6   HLKRL--------FVDFPLCIKTQGKASGDQYH--YLAHVLRMKEGDNI----------- 44
            L R         + D  L          D +   + + +L ++ G+ I           
Sbjct: 46  RLNRFLFDTSEVKYTDTELP---SITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQ 102

Query: 45  -LLFNGKDGEWLSKISYVGKSIRF------------KVEYQSRSQTKQSDVQYIFSPIKT 91
            LL +    +W+ +   V K+                   Q+ ++     V  I +  + 
Sbjct: 103 GLLTDDATVQWIPE-GKVKKAEPLGNGNPPGSLHIHLNGLQAPAEQLVPSVSLILALPRP 161

Query: 92  NRLDYMIQKSVEMGMGAIRPVITR------YTQNTHYNMDRVRTYTISAAEQCDILTLPF 145
            +L  M+    +MG+  +     +      +  +   N + +R   I    Q   + LP 
Sbjct: 162 LQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQ 221

Query: 146 IYPPTTLEFLLKNW--------DHNCQIVFADETCGSENSLEKLHAIA---HIPNVAILI 194
           ++    L   L N          +   I     T     SL+K+  +        + + +
Sbjct: 222 LHIVRNLRDFLTNEVDEIFPKNQYARAIAHPQRTSDPMGSLKKMKQVEFPVKSSRLVVAV 281

Query: 195 GPEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
           GPEGG+   +E +      F   +++G R+LRSD A V+ ++L   IC D
Sbjct: 282 GPEGGWEEPDELDRFRDCGFQQ-ITMGARVLRSDCAVVSLLSLAHDICAD 330


>gi|325274876|ref|ZP_08140889.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
 gi|324099993|gb|EGB97826.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas sp. TJI-51]
          Length = 235

 Score = 73.8 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 16/210 (7%)

Query: 37  RMKEGDNILL--FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94
           R+  GD + +   NG  G   + +  +            +    +  +  + +  +   L
Sbjct: 32  RVAVGDQLRVGRVNGLMG--KATVLRLAPHQAELEVAFDQQPPAKLPLTLVLAVPRPKML 89

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPP 149
             + Q    +G+  +  + +   + + +       + +R   I   EQ     LP +   
Sbjct: 90  RRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPESIRDNLILGLEQARDTVLPEVIIE 149

Query: 150 TTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGGYHSEEKET 207
              +  ++    +     A  T G         A        V + IGPEGG+   E + 
Sbjct: 150 KRFKPFVE----DRLPAIAAGTLGLVGHPGPYPACPRAVDQPVTLAIGPEGGWIPYEIDL 205

Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           L     + P+ LG RILR +TA  A ++ +
Sbjct: 206 LGKAG-LAPVQLGERILRVETAVTALLSRI 234


>gi|104783999|ref|YP_610497.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas entomophila
           L48]
 gi|95112986|emb|CAK17714.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 235

 Score = 73.8 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 16/234 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGK--DGEWLSKISYVGKSIRFKVE 70
           +       +   +  ++ ++  + R+  GD++ +  G+       +++  +         
Sbjct: 8   EADFVSADRVILADRRFTHMQEIHRVAVGDSLRV--GRIGGLMGKAEVIRLEGHEAELRV 65

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
              ++   +  +  + +  +   L  + Q    +G+  +  V +   + + +       +
Sbjct: 66  AFDQAPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILVNSYKVEKSFWQTPFLQPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP +      +  ++    +     A+ T G         A  
Sbjct: 126 AIRENLILGLEQARDTVLPEVIIEKRFKPFVE----DRLPAIAEGTLGLVGHPGPYPACP 181

Query: 186 HI--PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                 V + IGPEGG+   E E L     + P+ LG RILR +TA  A ++ +
Sbjct: 182 RAVEGPVTLAIGPEGGWIPYEVELLGKAG-LAPVQLGDRILRVETAVTALLSRI 234


>gi|302188582|ref|ZP_07265255.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae 642]
          Length = 235

 Score = 73.8 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD + +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDTVRVGRVNGLLGNAELLRLEAHEAELRVEL 67

Query: 72  QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS         +       K  R   + Q    MG+  +  + +   + + +       D
Sbjct: 68  QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPD 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  ++  D   QI                   A
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLGLVGHPGDFPACPRA 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
              +V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 184 VTQSVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|297185080|gb|ADI21189.1| uncharacterized protein conserved in bacteria [uncultured gamma
           proteobacterium EB750_07C09]
          Length = 70

 Score = 73.4 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 91  TNRLDYMIQKSVEMGMGAIRPVITRYT-------QNTHYNMDRVRTYTISAAEQCD 139
            +R+D+++QKS E+G+  I P++T ++       +++    +     + SA EQC 
Sbjct: 8   NDRMDFVVQKSTELGIKRITPLLTEFSFVKLNAXKHSXKKKEHWEKISQSACEQCG 63


>gi|330971760|gb|EGH71826.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 235

 Score = 73.4 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAELLRLELHEAELRVEL 67

Query: 72  QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS         +       K  R   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  ++  D   QI                   A
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLALVGHPGDFPACPRA 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 184 VTQPVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|26991695|ref|NP_747120.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas putida
           KT2440]
 gi|24986796|gb|AAN70584.1|AE016701_4 conserved hypothetical protein TIGR00046 [Pseudomonas putida
           KT2440]
          Length = 235

 Score = 73.0 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +   +  ++ ++  + R+  GDN+ +         + +  + K         
Sbjct: 8   EADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMGRATVLRLEKHEAELEVAF 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
            +    +  +  + +  +   L  + Q    +G+  +  + +   + + +       D +
Sbjct: 68  DQQPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPDTI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++              G+   +         
Sbjct: 128 RENLILGLEQARDTVLPEVIIEKRFKPFVEDR-------LPTIAAGTLGLVGHPGPYPAC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A ++ +
Sbjct: 181 PRAVEQAVTLAIGPEGGWIPYEVDLLGKAG-LAPVQLGDRILRVETAVTALLSRI 234


>gi|24214764|ref|NP_712245.1| hypothetical protein LA_2064 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24195765|gb|AAN49263.1|AE011378_10 conserved hypothetical protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 258

 Score = 73.0 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 24/221 (10%)

Query: 30  HYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIF 86
           +++ ++L  +EGD +   L +   G++   +  + K+    + +     + +  +V  + 
Sbjct: 27  NHICNILNKREGDRLKAGLIDTDLGQFF--LEKINKNQIVGIYKPILVPRPRFPEVHILM 84

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDIL 141
           +  +   +  ++Q +   G+ +I   I++ ++        +N + + +  +   EQ   +
Sbjct: 85  AINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNI 144

Query: 142 TLPFI--YPPTTLEFLL----KNWDHNCQIVFADETCGSENSLEKLHAI-------AHIP 188
            LP +       +E +L    K  D   + +   +        ++   I       +  P
Sbjct: 145 FLPKVCFDFQNQIENILIKKLKELDFTFRFILDRKGFTFTQVFKEKKKIDSNFGMYSKTP 204

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            V  +IGPE G+   E        F   L+L  RILR++TA
Sbjct: 205 RVLAVIGPESGFIPNEIYFWKRFGF-KKLNLSDRILRTETA 244


>gi|313500995|gb|ADR62361.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 235

 Score = 73.0 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 18/235 (7%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +   +  ++ ++  + R+  GDN+ +         + +  + K         
Sbjct: 8   EADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMGKATVLRLEKHEAELEVAF 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
            +    +  +  + +  +   L  + Q    +G+  +  + +   + + +       D +
Sbjct: 68  DQQPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPDTI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP +      +  +++              G+   +         
Sbjct: 128 RENLILGLEQARDTVLPEVIIEKRFKPFVEDR-------LPTIAAGTLGLVGHPGPYPTC 180

Query: 188 PN-----VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           P      V + IGPEGG+   E + L     + P+ LG RILR +TA  A ++ +
Sbjct: 181 PRAVEQAVTLAIGPEGGWIPYEIDLLGKAG-LAPVQLGDRILRVETAVTALLSRI 234


>gi|324998265|ref|ZP_08119377.1| hypothetical protein PseP1_05833 [Pseudonocardia sp. P1]
          Length = 139

 Score = 73.0 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
            D +  +V  +        +     +     V + +GPEGG    E   L     V P+ 
Sbjct: 57  ADADVALVLHESAGTGLADVP----LPDAGEVLLAVGPEGGVDDHELALLADAGAV-PVR 111

Query: 219 LGPRILRSDTAAVAAMALVQAICGDW 244
           +GP +LR+ TAA  A+  +    G W
Sbjct: 112 MGPEVLRASTAACVALGALAVRTGRW 137


>gi|66043648|ref|YP_233489.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254355|gb|AAY35451.1| Conserved hypothetical protein 46 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 235

 Score = 72.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAQLLRLEPHEAELRVEL 67

Query: 72  QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS         +       K  R   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  ++  D   QI                   A
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLALVGHPGDFPACPRA 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 184 VTQPVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|330977177|gb|EGH77135.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 235

 Score = 72.6 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAELLRLEAHEAELRVEL 67

Query: 72  QSRSQTKQSDVQYIFSPIKTNRL-DYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS    K      +  P    ++   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPAKLPLTLLLALPR--PKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  ++  D   QI                   A
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALETLGLVGHPGDFPACPRA 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 184 ATEQVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|304310394|ref|YP_003809992.1| hypothetical protein HDN1F_07500 [gamma proteobacterium HdN1]
 gi|301796127|emb|CBL44333.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 243

 Score = 72.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 97  MIQKSVEMGMGAIRPVITRYTQNTHYNMDRV--RTYTIS---AAEQCDILTLPFIYPPTT 151
           ++Q    MG+ ++  + T   + +++    +             EQ     LP +   T 
Sbjct: 98  ILQTVAAMGVKSVYLINTYRVEKSYWQSPFLLPEAIFQELLLGLEQGVDTQLPQVQLRTR 157

Query: 152 L-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206
                 + L         +V              + A+    +V + IGPEGG+   E E
Sbjct: 158 FKPFVEDELPALLQGKLGLVAHP-----TGEAHDIRALGEQASV-LAIGPEGGFIPYEIE 211

Query: 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            L +  F   LSLGPRILR +TA    +  +
Sbjct: 212 KLQAAGF-RSLSLGPRILRVETAIPVLLTRL 241


>gi|289672001|ref|ZP_06492891.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           syringae FF5]
          Length = 235

 Score = 72.2 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGNAELLRLDPHEAELRVEL 67

Query: 72  QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS         +       K  R   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  ++  D   QI                   A
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVE--DRLPQIALDTLGLVGHPGDFPACPRA 183

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 184 ATEQVTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|330899251|gb|EGH30670.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330938660|gb|EGH42225.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 235

 Score = 71.9 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGNAELLRLDPHEAELRVEL 67

Query: 72  QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS         +       K  R   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPAKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  +++      +          +      AI 
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLGLVGHPGDFPACPRAIT 185

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 186 DQ--VTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|308801857|ref|XP_003078242.1| unnamed protein product [Ostreococcus tauri]
 gi|116056693|emb|CAL52982.1| unnamed protein product [Ostreococcus tauri]
          Length = 426

 Score = 71.9 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 58/278 (20%)

Query: 9   RLFVDFPLCIKTQGKASGDQYH--YLAHVL--------RMKEGDN------ILLFNGKDG 52
           R+          + + +G      +   VL        R    D       I+  +G DG
Sbjct: 158 RILFRADEVDGDEARVAGLDARARHAREVLGASVGSTIRAGVIDEGRCSGTIIADDGDDG 217

Query: 53  EWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPV 112
           E++  +S    S R        +  +   ++ +++P+              MG+G +   
Sbjct: 218 EFIVALSAREGSTRAPRVDLLLATPRPKVLRRMWAPLAA------------MGVGRVFLA 265

Query: 113 ITRYTQN---THYNMDR--VRTYTISAAEQCDILTLPFI-----YPPT------------ 150
                +        ++R  +R   +   EQ     +P I      PP             
Sbjct: 266 NASKVERYYFDSKALERETIREEILRGLEQAGDYIVPQIGVAKRLPPIIDRLAGKLEGND 325

Query: 151 ---TLEFLL---KNWDHN-CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSE 203
                E+LL   + W  +   ++ A       +  + L  +     V I IGPEGG+   
Sbjct: 326 MTNGFEWLLGGDRAWTLDVDVLLLAHPGESRTSVADALAGVDENSRVLIAIGPEGGWTEY 385

Query: 204 EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
           E + L    F   ++LG R L +D A ++ ++ V+   
Sbjct: 386 ELDMLEHAGFRK-IALGTRTLTTDVACISLISAVRERL 422


>gi|330951280|gb|EGH51540.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae Cit
           7]
          Length = 235

 Score = 71.5 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSVRVGRVNGLLGNAELLRLEPHEAELRVEL 67

Query: 72  QSRSQTKQSDVQYIFSPIKTNRL-DYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS    K      +  P    ++   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPAKLPLTLLLALPR--PKMLRRVFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  +++      +          +      A+ 
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLGLVGHPGDFPACPRAVT 185

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 186 EQ--VTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|45657713|ref|YP_001799.1| 16S ribosomal RNA methyltransferase RsmE [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600953|gb|AAS70436.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 257

 Score = 71.5 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 30  HYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQYIF 86
           +++ ++L  +EGD +   L +   G++   +  + K+    + +     + +  +V  + 
Sbjct: 27  NHICNILNKREGDRLKAGLIDTDLGQFF--LEKINKNQIVGIYKPILVPRPRFPEVHILM 84

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQCDIL 141
           +  +   +  ++Q +   G+ +I   I++ ++        +N + + +  +   EQ   +
Sbjct: 85  AINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNI 144

Query: 142 TLPFI--YPPTTLEFLL----KNWDHNCQIVFADETCGSENSLEKLHAI-------AHIP 188
            LP +       +E +L    K  D   + +  D    +   + K   I       +  P
Sbjct: 145 FLPKVCFDFQNQIENILIKKLKELDFTFRFIL-DRKGFTFTQVFKEKKIDSNFGMYSKTP 203

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            V  +IGPE G+   E        F   L+L  RILR++TA
Sbjct: 204 RVLAVIGPESGFIPNEIYFWKRFGF-KKLNLSDRILRTETA 243


>gi|269214516|ref|ZP_06158620.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970]
 gi|269209685|gb|EEZ76140.1| 16S rRNA methyltransferase RsmE [Neisseria lactamica ATCC 23970]
          Length = 52

 Score = 71.1 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
           ++GPEGG+  +E++      F   ++LG RILR++TAA+AA+A +Q + GD+
Sbjct: 1   MVGPEGGWTEQEEQQAFDAGF-QAVTLGKRILRTETAALAALAAMQTLWGDF 51


>gi|289624222|ref|ZP_06457176.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647404|ref|ZP_06478747.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485111|ref|ZP_07003207.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160363|gb|EFI01388.1| RNA methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330865688|gb|EGH00397.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 235

 Score = 70.3 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 12/232 (5%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71
           +       +      +  ++  V R + GD++ +         +++  +       +VE 
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRINGLLGNAELLRLEPHEAELRVEL 67

Query: 72  QS-RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----D 125
           QS         +       K  R   + Q    MG+  +  + +   + + +       +
Sbjct: 68  QSAPPTKLPLTLLLALPRPKMLRR--VFQTVATMGVPKVILLNSYRVEKSFWQTPFLEPE 125

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
            +R   I   EQ     LP I      +  +++      +          +      A+ 
Sbjct: 126 AIREQLILGLEQARDSVLPEIVIEKRFKPFVEDRLPQIALDTLGLVGHPGDFPACPRAVT 185

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
               V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 186 EQ--VTLAIGPEGGWIPYEIDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|51244547|ref|YP_064431.1| hypothetical protein DP0695 [Desulfotalea psychrophila LSv54]
 gi|50875584|emb|CAG35424.1| hypothetical protein DP0695 [Desulfotalea psychrophila LSv54]
          Length = 96

 Score = 69.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 33/66 (50%)

Query: 7  LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIR 66
          ++R F       +     S ++  +++ VLR++ G+ + L +G+   +  +I  VG  ++
Sbjct: 1  MRRFFFSRQQEEEGLVVLSPEESRHISRVLRLEPGEVVELLDGRGSVFGGEIVAVGAEVQ 60

Query: 67 FKVEYQ 72
           ++  +
Sbjct: 61 VRITAE 66


>gi|116075531|ref|ZP_01472791.1| hypothetical protein RS9916_28264 [Synechococcus sp. RS9916]
 gi|116067728|gb|EAU73482.1| hypothetical protein RS9916_28264 [Synechococcus sp. RS9916]
          Length = 240

 Score = 68.8 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 71/225 (31%), Gaps = 10/225 (4%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
                 +  +  ++   L    GD + +        + ++  + +               
Sbjct: 15  DNVVTLTDHRADHILRHLGASVGDAVRVGQLGGKVGVGRLEAIDQGHVTLSVQLEADPPP 74

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTIS 133
           +     + +  +   L  +++   E G+  +  + +   + +++        +V    ++
Sbjct: 75  RHHFDIVLALPRPKMLRRILRTVAEFGVENLHLINSARVEKSYWQTPLLSAAKVDDALMA 134

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN-SLEKLHAIAHIPNVAI 192
             E+      P ++        +++       + A  +C   +       A   I    +
Sbjct: 135 GMERSSDTVAPRVHLHKRFRPFVED---QLVDLCAGRSCWIADMDAPMALAAQPINRAVV 191

Query: 193 LIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +IGPEGG+   E            + LG R    DTA    +A V
Sbjct: 192 MIGPEGGFVPFEIALAQKA-LAKRVHLGVRTFSVDTALTTVLAQV 235


>gi|219685331|ref|ZP_03540150.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498
           methyltransferase 1) [Borrelia garinii Far04]
 gi|219673104|gb|EED30124.1| ribosomal RNA small subunit methyltransferase E 1 (16SrRNA m3U1498
           methyltransferase 1) [Borrelia garinii Far04]
          Length = 98

 Score = 68.8 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 143 LPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHS 202
           +P I     L+  LK         F  +    ++S +KL  I  + N  I++GPE G+  
Sbjct: 1   MPKIKIMKNLKESLKYIKQE---NFEIKILLEKDSKKKLIDIEQVNNATIIVGPERGFTE 57

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
           +EK+ +    F +  S+   ILR++TA + A +++ A
Sbjct: 58  KEKQLIMQYNF-SSCSISSNILRTETAIITA-SIITA 92


>gi|213969416|ref|ZP_03397553.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
 gi|301386676|ref|ZP_07235094.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063217|ref|ZP_07254758.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato K40]
 gi|302132114|ref|ZP_07258104.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925787|gb|EEB59345.1| conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv.
           tomato T1]
 gi|331016059|gb|EGH96115.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 235

 Score = 68.8 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 8/230 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R + GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRVSL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
           +     +  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  TAEPPAKLPLTLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP I      +  +++   +  I                   A  
Sbjct: 128 REQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACPRAVT 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 186 QPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|28872270|ref|NP_794889.1| hypothetical protein PSPTO_5158 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855524|gb|AAO58584.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 235

 Score = 68.4 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 16/234 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGK-DGEWLSKISYVGKSIRFKV 69
           +       +      +  ++  V R + GD++ +   NG      L ++      +R  +
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRVSL 67

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDY-MIQKSVEMGMGAIRPVITRYTQNTHYNM---- 124
             +  ++   + +  +  P    ++   + Q    MG+  +  + +   + + +      
Sbjct: 68  TAEPPAKLPLTLLLALPRP----KMLLRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLE 123

Query: 125 -DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA 183
            + +R   I   EQ     LP I      +  +++   +  I                  
Sbjct: 124 PEAIREQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACP 181

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            A    V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 182 RAVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|330962012|gb|EGH62272.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 235

 Score = 68.4 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGK-DGEWLSKISYVGKSIRFKV 69
           +       +      +  ++  V R + GD++ +   NG      L ++      +R  +
Sbjct: 8   EADFIAADRVILRDRRLKHMQEVHRAEIGDSVRVGRINGLLGNAELLRLEAHEAELRVVL 67

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124
           + +  ++   + +  +  P    R+   +  +  MG+  +  + +   + + +       
Sbjct: 68  DAEPPAKLPLTLLLALPRPKMLRRVFQTV--AT-MGVPRVVVLNSYRVEKSFWQTPFLEP 124

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
             +R   I   EQ     LP I      +  +++                 +      A+
Sbjct: 125 AAIREQLILGLEQARDSVLPDIVIEKRFKPFVEDRLPQLAADTLGLVGHPGDFPACPRAV 184

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
                V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 185 TGP--VTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|330964770|gb|EGH65030.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 235

 Score = 68.0 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILL--FNGK-DGEWLSKISYVGKSIRFKV 69
           +       +      +  ++  V R + GD++ +   NG      L ++      +R  +
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRVSL 67

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM----- 124
             +  ++   + +  +  P    R+   I  +  MG+  +  + +   + + +       
Sbjct: 68  NAEPPAKLPLTLLLALPRPKMLRRVFQTI--AT-MGVPKVILLNSYRVEKSFWQTPFLEP 124

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAI 184
           + +R   I   EQ     LP I      +  +++   +  I                   
Sbjct: 125 EAIREQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACPR 182

Query: 185 AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           A    V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 183 AVTQPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|330877927|gb|EGH12076.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 235

 Score = 68.0 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 8/230 (3%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72
           +       +      +  ++  V R + GD++ +         +++  +           
Sbjct: 8   EADFIAADRVVLRDRRLKHMQEVHRAEVGDSLRVGRVNGLLGSAELLRLEPHEAELRASL 67

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRV 127
           +     +  +  + +  +   L  + Q    MG+  +  + +   + + +       + +
Sbjct: 68  TAEPPAKLPLTLLLALPRPKMLRRVFQTIATMGVPKVILLNSYRVEKSFWQTPFLEPEAI 127

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI 187
           R   I   EQ     LP I      +  +++   +  I                   A  
Sbjct: 128 REQLILGLEQARDCVLPEIVIEKRFKPFVEDRLPH--IAADTLGLVGHPGDFPACPRAVT 185

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             V + IGPEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 186 QPVTLAIGPEGGWIPYEVDLLRQSG-LQPVQLGERILRVETAVTALLARL 234


>gi|325114321|emb|CBZ49878.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 500

 Score = 68.0 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           + +++       +  S+ K+HA +    V + IGPEGG+  +E   L         SLG 
Sbjct: 300 SRRLIAHPGVDATLGSI-KMHAHSRG-RVLVAIGPEGGWLDQEVLELSETQGFEFFSLGD 357

Query: 222 RILRSDTAAVAAMALVQAICGD 243
           R+LR +TA V+ +A +  +  D
Sbjct: 358 RVLRCETAVVSVIAQLNMLLQD 379



 Score = 55.7 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 22  GKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVG----KSIRFKVE---YQ 72
                    +   VL+++ G    + +FNG  G    K+  +       ++ ++E    +
Sbjct: 41  VDLPSAAAQHCLSVLKVQVGSTVKVGVFNG--GVCTGKVVAINGQSPACVQVQLERDIAK 98

Query: 73  SRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN---THYNMDR--V 127
               +  S +  + +  +   LD ++Q S  +G+G +  V +   +    +   + R  +
Sbjct: 99  EACASPDSLIDLLLAIPRPKTLDKILQVSATLGVGRVLLVCSERVEKGYLSSPKLSRENI 158

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFLLK 157
                +  EQ     +P +    + + L+ 
Sbjct: 159 EKQLQTGLEQGVSTRVPEVQVFASWQALMA 188


>gi|226946565|ref|YP_002801638.1| 16S ribosomal RNA methyltransferase RsmE [Azotobacter vinelandii
           DJ]
 gi|226721492|gb|ACO80663.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 235

 Score = 68.0 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 28/218 (12%)

Query: 35  VLRMKEGDNILL-----FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI 89
           V R + GD++ +       G+      + +     + F     ++              +
Sbjct: 30  VHRAEAGDSLRVGRLGGAMGEGRLLRLEAAEAELQVVFDRPPPAKLPLTLLLALPRPKML 89

Query: 90  KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLP 144
           K      ++Q    MG+  +  + +   + + +         +R   +   EQ     LP
Sbjct: 90  KR-----VLQTVAAMGVPRLVLLNSYRVEKSFWQTPFLEAQAIREQLLLGLEQARDTVLP 144

Query: 145 FIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIGPEGG 199
            +      +  +++              G+   L         P      V + IGPEGG
Sbjct: 145 EVLVEKRFKPFVEDHLPQL-------AAGTLGLLGHPGDYPPCPRAVERPVTLAIGPEGG 197

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +   E + L +   + P+ LG RILR +TA  A +A +
Sbjct: 198 WIPYEVDKLQAAG-LAPVQLGERILRVETAVTALLARL 234


>gi|148242227|ref|YP_001227384.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. RCC307]
 gi|147850537|emb|CAK28031.1| Conserved hypothetical protein [Synechococcus sp. RCC307]
          Length = 236

 Score = 68.0 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 78/222 (35%), Gaps = 8/222 (3%)

Query: 20  TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQ 79
            Q +  G +  ++   L+   G  + +      +  ++I+ +            +    +
Sbjct: 16  DQVRLVGRRADHIRQQLKAVLGQTVRVGLMGGPQGTAEITALDADAVVLSVALDQPPPPR 75

Query: 80  SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NMDRVRTYTISA 134
                + +  +   L  + + + E G+G +  + +   + + +        +V     + 
Sbjct: 76  HRFDVVLALPRPKMLRRIFRTAAEFGVGQLHLINSARVEKSFWQTPLLKPAKVAEALQAG 135

Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
            E+      P ++        ++  D    +        ++       A A   +  +++
Sbjct: 136 MERARDTIAPQVHLHQRFRPFVE--DELSALCAGRPCWITDQGAPLALASAPAGHAVVMV 193

Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236
           GPEGG+   E E   S+     + LG R L  DTA  A +AL
Sbjct: 194 GPEGGFVPFEIELACSV-VAQRVHLGERTLSVDTALTATLAL 234


>gi|152997764|ref|YP_001342599.1| 16S ribosomal RNA methyltransferase RsmE [Marinomonas sp. MWYL1]
 gi|150838688|gb|ABR72664.1| protein of unknown function DUF558 [Marinomonas sp. MWYL1]
          Length = 239

 Score = 67.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 20/222 (9%)

Query: 19  KTQGKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
             +   +  Q  +++ V++ + GD   + + NGK GE + +     +         +   
Sbjct: 14  DGRYGLTERQQTHISKVIKAESGDVLRVGVLNGKIGEGVYESPSESQPGYIHSLDLTLQP 73

Query: 77  TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MDRVRTYT 131
                +  + +  + N L   +Q    MG+  +  + +   + +++       + ++   
Sbjct: 74  PTPLPMVLVMALPRPNMLKRTLQNITAMGVKDLYLIHSAKVEKSYWQSPVLQTESIQQCL 133

Query: 132 ISAAEQCDILTLPFIYPPTTL-----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           +   EQ     +P             + L         ++           L K   +  
Sbjct: 134 LEGLEQAKDTVMPNWSLIPRFRPFVEDQLPDILKDKMGLLAHPY-------LAKRCPVDI 186

Query: 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
                + +GPEGG++  E    H    +  + LG RIL+ +T
Sbjct: 187 QQPCVLALGPEGGWNEFEVSKWHEAG-MESVHLGDRILKVET 227


>gi|116328047|ref|YP_797767.1| hypothetical protein LBL_1342 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331500|ref|YP_801218.1| hypothetical protein LBJ_1942 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120791|gb|ABJ78834.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125189|gb|ABJ76460.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 260

 Score = 67.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 33/232 (14%)

Query: 31  YLAHVL------RMKEGDNILLFNGK-DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQ 83
           ++ ++L      R+K G    L +       L KI      I    +       +  +V 
Sbjct: 28  HICNILNKREGARLKAG----LIDTSLGKFILEKIE--SNRIVGIYKPILVPIPRFPEVH 81

Query: 84  YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVRTYTISAAEQC 138
            + +  +   +  ++Q +   G+ +I   ++R ++        +N   + +  +   EQ 
Sbjct: 82  ILLAINRPPTVRKILQLAGTWGVSSIHFFVSRNSRREYLTSPVWNSTEIESELLEGMEQG 141

Query: 139 DILTLPFIY-------PPTTLEFLLKNWDHNCQIVF------ADETCGSENSLEKLHAIA 185
             + LP I+           LE   K  D   + V         +    + S       +
Sbjct: 142 KNIFLPKIHFDFKNRSETILLEKF-KKVDFTFRFVLDRRGATLPQIIEEKKSDSNFGMPS 200

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             P V + IGPE G+   E +      F   L+L  R+LR++TA    ++ +
Sbjct: 201 KTPQVLVAIGPESGFVRNEIDFWKRFGF-KKLNLSSRVLRTETAVAFLLSRL 251


>gi|257456398|ref|ZP_05621594.1| RNA methyltransferase, RsmE family [Treponema vincentii ATCC 35580]
 gi|257446058|gb|EEV21105.1| RNA methyltransferase, RsmE family [Treponema vincentii ATCC 35580]
          Length = 321

 Score = 66.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 91/275 (33%), Gaps = 62/275 (22%)

Query: 25  SGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK---- 78
           + +++ ++  VL++  G      + +G+ G   ++I      +       S  Q      
Sbjct: 33  TDERFLHIKKVLKLSAGSAFKAGIIDGEKG--TAEIISFSDELLTARFSASAEQAPDNGD 90

Query: 79  -----QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTIS 133
                   ++ I    +  +L  +++    +G+ A+    T   + ++   D        
Sbjct: 91  CPSSALPHIRLILGFPRPIQLRRILRDVAGLGIEALYLTGTELGEKSYLQAD----IAAE 146

Query: 134 A---------AEQCDILTLPFIYPPTTLEFLLKNWDHNC--------------------- 163
           A           Q     +P +Y   +L      ++                        
Sbjct: 147 AEIERLLIDGCSQAGETHIPTVYRAYSLRHFFDRYEDEILPDHLRAVLDVPFQVEQDKID 206

Query: 164 ------------QIVFADETCGSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETLH 209
                       +IV  +++     ++  L  +       + + +G E G+   E+    
Sbjct: 207 QAHIERKPIEQNRIVHGEDSNLYTPAIYPLPQLQWDGAKTLWLAVGNERGWSLNERLLFA 266

Query: 210 SLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
              F T   +G RILR++TA  +A+A+  A+ G W
Sbjct: 267 KKRF-TVYGMGQRILRTETAVTSAVAVCLALSGAW 300


>gi|83286253|ref|XP_730081.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489691|gb|EAA21646.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 442

 Score = 66.8 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQS 80
            G Q  +L ++L++K    I +     G+    I                +  +SQ    
Sbjct: 23  DGRQTSHLKNILKVKLNQIIKVGVINKGKGEGIILEENPKFYIIKLLTPIHLEKSQNNFL 82

Query: 81  DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISAA 135
            +  +    +   L+  +Q+   +G+  I  V + Y+            D ++       
Sbjct: 83  PIDVVLCIPRPKVLNKALQQLSSVGVKKIIIVFSEYSNKCYESSKMLKNDEIKFALQLGL 142

Query: 136 EQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAI--AHIPN 189
           EQ    + P +Y   T      N     D N   V A      +N     ++I       
Sbjct: 143 EQAMCTSFPKVYVHYTFSSFFMNIQNYCDENTIKVCAHTDIKKKNEHPLEYSILNKEKGK 202

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           + +++G E G+   E   L  L F   L+L  RIL+ +TA
Sbjct: 203 ILLMLGCERGFSDLEIYLLQKLNF-NFLNLSERILKCETA 241


>gi|237798073|ref|ZP_04586534.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806073|ref|ZP_04592777.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020925|gb|EGI00982.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027186|gb|EGI07241.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 138

 Score = 66.5 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 104 MGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           MG+  +  + +   + + +       + +R   I   EQ     LP I      +  +++
Sbjct: 2   MGVPKVVLMNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDCVLPEIVIEKRFKPFVED 61

Query: 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLS 218
                            +      A+     V + IGPEGG+   E + L     + P+ 
Sbjct: 62  RLPQMAANTLGLVGHPGDFPACPRAVTQP--VTLAIGPEGGWIPYEIDLLQKSG-LQPVQ 118

Query: 219 LGPRILRSDTAAVAAMALV 237
           LG RILR +TA  A +A +
Sbjct: 119 LGERILRVETAVTALLARL 137


>gi|70945070|ref|XP_742395.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521354|emb|CAH84664.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 431

 Score = 66.5 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 12/171 (7%)

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNM 124
            +  + Q     +  +    +   L+  +Q+   +G+  I  V + Y+            
Sbjct: 72  IHLEQPQNNFLPIDVVLCIPRPKVLNKALQQLSSVGVKKIIIVFSEYSNKCYESSKMLKN 131

Query: 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEK 180
           D ++       EQ    + P +Y   T      N     D N   V A      +N    
Sbjct: 132 DEIKLALQLGLEQAMCTSFPKVYMHYTFSSFFMNIQNYCDENTIKVCAHTDIKKKNEYPL 191

Query: 181 LHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
            H+I       + +++G E G+   E   L  L F   L+L  RIL+ +TA
Sbjct: 192 EHSILNKEKGKILLMLGCERGFSDLEIYLLQKLNF-NFLNLSERILKCETA 241


>gi|297185081|gb|ADI21190.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
          Length = 44

 Score = 66.1 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 203 EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
           +E ++     F   +SLGPRILR++TA++AA++++QA  G
Sbjct: 6   KEIQSAREFGF-NGISLGPRILRTETASLAAISIIQAKWG 44


>gi|312958499|ref|ZP_07773019.1| hypothetical protein PFWH6_0395 [Pseudomonas fluorescens WH6]
 gi|311287042|gb|EFQ65603.1| hypothetical protein PFWH6_0395 [Pseudomonas fluorescens WH6]
          Length = 235

 Score = 66.1 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 28/222 (12%)

Query: 31  YLAHVLRMKEGDNILLFNGK-----DGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYI 85
           ++  V R   GD++ +  G+         L ++      ++   + Q         +   
Sbjct: 26  HMQEVHRASVGDSLRV--GRIGGLMGNAHLLRLEAREAELQVSFD-QPPPAKLPLTLLLA 82

Query: 86  FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDI 140
               K  R   ++Q    MG+  +  V +   + + +       + VR   I   EQ   
Sbjct: 83  LPRPKMLRR--VLQTVAAMGVPKVVLVNSYRVEKSFWQTPFLEPEAVREQLILGLEQARD 140

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-----VAILIG 195
             LP I      +  +++            T G+   +         P      V + IG
Sbjct: 141 TVLPEIIIEKRFKPFVEDRLPAM-------TQGTLGLIGHPGDYPPCPRGLDEPVTLAIG 193

Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           PEGG+   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 194 PEGGWIPYEVDLLTKAG-LQPVQLGARILRVETAVTALLARL 234


>gi|466982|gb|AAA17168.1| B1937_F2_57 [Mycobacterium leprae]
          Length = 128

 Score = 65.7 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 142 TLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
            +P +    T   LL+            +   +      + +    ++A   ++ +L+GP
Sbjct: 16  HIPSVDGVLTTAALLQRIRDEVAAGATVLALHESATDRLSDVFADISVAQANSLVLLVGP 75

Query: 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228
           EGG   +E   L     V  + LGP +LRS T
Sbjct: 76  EGGIAPDEIAALTEAGAV-AVRLGPTVLRSST 106


>gi|221057888|ref|XP_002261452.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
 gi|194247457|emb|CAQ40857.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
          Length = 414

 Score = 65.7 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 68/203 (33%), Gaps = 18/203 (8%)

Query: 49  GKDGEWLSKISYVGKS----IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEM 104
           GK       I+   K           +  +S+     +  +    +   L+  +Q+   +
Sbjct: 51  GKG---EGVITEESKKYYTIKLLGAIHLQKSEDTYIPIDVVICIPRPKVLNKFLQQLSSV 107

Query: 105 GMGAIRPVITRYTQN-----THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159
           G+  I  V + +             + ++       EQ      P ++   +      N 
Sbjct: 108 GVKKIIIVFSDFANKSYESSKVLKNEEIKNALQLGLEQAMCTEFPEVFIHYSFSSFAMNI 167

Query: 160 D-----HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFV 214
           D        ++    E   +++ +E+         + +++G E G+   E   +  L F 
Sbjct: 168 DRYSDDKTIKLCAHTEVKRNDSCVERDILCREQGKILLMVGCERGFSELEIYLIKKLQF- 226

Query: 215 TPLSLGPRILRSDTAAVAAMALV 237
              +L  RIL+ +TA +  +  +
Sbjct: 227 RFFNLTERILKCETALLVIIGQL 249


>gi|229587942|ref|YP_002870061.1| 16S ribosomal RNA methyltransferase RsmE [Pseudomonas fluorescens
           SBW25]
 gi|229359808|emb|CAY46658.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 235

 Score = 65.3 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 20/218 (9%)

Query: 31  YLAHVLRMKEGDNILLFNGK--DGEWLSKISYVG-KSIRFKVEY-QSRSQTKQSDVQYIF 86
           ++  V R   GD++ +  G+       +++  +  +    +V + Q         +    
Sbjct: 26  HMQEVHRAVVGDSLRV--GRIGGLMGNAQLVRLEAREAELQVSFDQPPPAKLPLTLLLAL 83

Query: 87  SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNM-----DRVRTYTISAAEQCDIL 141
              K  R   ++Q    MG+  +  V +   + + +       + +R   I   EQ    
Sbjct: 84  PRPKMLRR--VLQTVAAMGVPKVVLVNSYRVEKSFWQTPFLEPEAIREQLILGLEQARDT 141

Query: 142 TLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHI--PNVAILIGPEGG 199
            LP I     +E   K +  +      + T G         A        V + IGPEGG
Sbjct: 142 VLPEI----VIEKRFKPFVEDRLPAMTEGTLGLIGHPGDYPACPRGLDEPVTLAIGPEGG 197

Query: 200 YHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
           +   E + L     + P+ LG RILR +TA  A +A +
Sbjct: 198 WIPYEVDLLTQAG-LQPVQLGARILRVETAVTALLARL 234


>gi|224012771|ref|XP_002295038.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969477|gb|EED87818.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 309

 Score = 64.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
           +   ++ H P   + +GPE G+  EE             +LG  ILR DTA +A + +V 
Sbjct: 225 QNTTSVDHTPKAIVAVGPERGWTDEEANIFVDQCGFETATLGSSILRVDTAVIAGLGVVS 284

Query: 239 AIC 241
           A  
Sbjct: 285 AAL 287


>gi|294896504|ref|XP_002775590.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239881813|gb|EER07406.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 288

 Score = 63.0 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 32/246 (13%)

Query: 22  GKASGDQYH--YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
            +         ++  VL+ + GD I   + +G     + + S V   +RFKV++ +  Q 
Sbjct: 33  VRLPSSDARAKHVQKVLKSEPGDWIRAGVIDGPLCSVMVEESSVELGVRFKVDFAAPIQG 92

Query: 78  KQ--------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NM 124
                       V  I    +   +  +     ++G+  I  +     +   +       
Sbjct: 93  AGAEAGAMADPGVDLILCAPRPKVMARLWPTIAQLGVKRICIITAERVEKAFWATHVLRP 152

Query: 125 DRVRTYTISAAEQ-CDILTLPFIY-PPTTLEFLLK-------NWDHNCQIVFADET--CG 173
           +  R   +   EQ     TL  +   P + E  L          +  C++V         
Sbjct: 153 EFYRPLLLKGLEQASVDTTLTKVSVHPKSFERFLNGELERSFPEEKYCRLVCHPYDGCSQ 212

Query: 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
              ++ K         V + +GPEGG+   E E +    F    ++ PRI  +D   VA 
Sbjct: 213 LHEAVVKCLGSGSPKRVVLALGPEGGWLDYEIEMMREKGFECVTTM-PRIFSTD---VAL 268

Query: 234 MALVQA 239
            +LV  
Sbjct: 269 TSLVSV 274


>gi|86171421|ref|XP_966208.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|46361174|emb|CAG25038.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 434

 Score = 62.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 17/218 (7%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-----SIRFKVEYQSRSQTKQSDV 82
           Q  +L ++L +     I +     G+   K+    K      +   +  + +S      +
Sbjct: 26  QTSHLKNILNVTLNQIIKVGVINKGKGEGKVIEESKSYYIIKLLTPIHLEEKSDDNVLPI 85

Query: 83  QYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTISAAEQ 137
             +    +   L+ ++Q+   +G+  I  V + ++            + ++       EQ
Sbjct: 86  DVVLCIPRPKVLNKLLQQLSSLGVKKIIIVFSDFSNKCYESSKILKNEEIKLALQLGLEQ 145

Query: 138 CDILTLPFIYPPTTLEFLL----KNWDHNCQIVFADETCGSENSLEKLHAIA--HIPNVA 191
                 P IY   +         K  D +   + A      +N     ++I       + 
Sbjct: 146 AMCTRFPEIYIHYSFSSFFMNIEKYTDEHTLKICAHTNVKKKNMESIEYSILNMEKGKIL 205

Query: 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
           +++G E G+   E   +  L F    +L  RIL+ +TA
Sbjct: 206 LMLGCERGFSELELYLIKKLNF-HFFNLTERILKCETA 242


>gi|332298993|ref|YP_004440915.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
 gi|332182096|gb|AEE17784.1| Ribosomal RNA small subunit methyltransferase E [Treponema
           brennaborense DSM 12168]
          Length = 257

 Score = 62.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 81/242 (33%), Gaps = 44/242 (18%)

Query: 14  FPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL--LFNGKDGEWLSKISYV-GKSIRFKVE 70
            P  I+     S ++  ++  VL    GD     + NG+ G   ++I  +    I F  E
Sbjct: 7   TPEEIRAPLPLSDERAKHITVVLHKTAGDTFEAGIVNGRAG--TARIESIRSDGIEFSFE 64

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRV 127
            QS  +     +  I    +  +L  +++    +G  A+    T   + ++     ++R 
Sbjct: 65  AQSDGKPLYP-LTMIIGFPRPIQLKRLLRDVASLGAAAVHLTGTELGEKSYMKSSLVER- 122

Query: 128 RTYTISAAE-------QCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
                +AA        Q     +P +Y  T+L   L           A +T G++     
Sbjct: 123 ----GAAARMLQDGSIQAKSTHVPELYLHTSLGECLMALSSR---NAAGKTSGAQPVRAA 175

Query: 181 LHAIAH-------------------IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221
           L  +                        V   +G E G+   E+  L    F T   +G 
Sbjct: 176 LDNVRPECSLTDHPEIKNAGAAGLRERGVIAAVGSERGWTDNERTLLTDAGF-TLCGMGT 234

Query: 222 RI 223
           RI
Sbjct: 235 RI 236


>gi|294900881|ref|XP_002777160.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239884621|gb|EER08976.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 288

 Score = 62.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 32/246 (13%)

Query: 22  GKASGDQYH--YLAHVLRMKEGDNIL--LFNGKDGEWLSKISYVGKSIRFKVEYQSRSQT 77
            +         ++  VL+ + GD I   + +G     + + S V   +RFKV++ +  Q 
Sbjct: 33  VRLPSSDARAKHVQKVLKSEPGDWIRAGVIDGPLCSVMVEESSVELGVRFKVDFAAPIQG 92

Query: 78  KQ--------SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHY-----NM 124
                       V  I    +   +  +     ++G+  I  +     +   +       
Sbjct: 93  AGAEAGAMADPGVDLILCAPRPKVMARLWPTIAQLGVKRICIITAERVEKAFWATHVLRP 152

Query: 125 DRVRTYTISAAEQ-CDILTLPFIY-PPTTLEFLLK-------NWDHNCQIVFADETCGSE 175
           +  R   +   EQ     TL  +   P + E  L          +  C++V       S+
Sbjct: 153 EFYRPLLLKGLEQASVDTTLTKVSVHPKSFERFLNGELERSFPEEKYCRLVCHPYDGCSQ 212

Query: 176 NSLEKLHAIAHI--PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233
                +  + +     V + +GPEGG+   E E +    F    ++ PRI  +D   VA 
Sbjct: 213 LHEAVVKCLGNGSAKRVVLALGPEGGWLDYEIEMMREKGFECVTTM-PRIFSTD---VAL 268

Query: 234 MALVQA 239
            +LV  
Sbjct: 269 TSLVSV 274


>gi|156101085|ref|XP_001616236.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805110|gb|EDL46509.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 443

 Score = 61.8 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 11/174 (6%)

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----HYNMDRVR 128
           +++     +  +    +   L+  +Q+   +G+  I  V + +   +         + ++
Sbjct: 77  KAEDTYIPIDVVICIPRPKVLNKFLQQLSSVGVKKIVIVFSNFANKSYESSRVLKNEEIK 136

Query: 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNC-----QIVFADETCGSENSLEKLHA 183
                  EQ      P ++   +    + N D        ++    E   S   +E+   
Sbjct: 137 NALQLGLEQAMCTQFPQVFIHYSFSSFVMNIDRYSDERTIKLCAHTEVRRSAGCVERDIL 196

Query: 184 IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
            A    + +++G E G+   E   +  L F    +L  RIL+ +TA +  +  +
Sbjct: 197 GAERGKILLMVGCERGFSELEIFLIRKLQF-RFFNLTERILKCETALLVIIGQL 249


>gi|113954566|ref|YP_730658.1| 16S ribosomal RNA methyltransferase RsmE [Synechococcus sp. CC9311]
 gi|113881917|gb|ABI46875.1| Protein of unknown function (DUF558) family protein [Synechococcus
           sp. CC9311]
          Length = 244

 Score = 59.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 75/235 (31%), Gaps = 12/235 (5%)

Query: 11  FVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70
           F++      T      D+  ++  VL    G ++ +           +  +         
Sbjct: 11  FINHS----TTAIIRDDRLVHIRQVLNPNVGQSLKVGLLGGNCGYGIVESINSYGIILQI 66

Query: 71  YQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-----MD 125
             +     +     + +  +   L  +++   E G+  +  + +   + + +       +
Sbjct: 67  VLNEPAPHRHPFDIVLALPRPKMLRRILRTIAEYGVENLHLINSARVEKSFWQSPLLTPE 126

Query: 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
           ++    I   E+     +  +         +++      +         + +   +   +
Sbjct: 127 KIHDALIVGMERSKDTLMTNVKLHRRFRPFVEDQLPEICVNRTCWLTDMKATQSIVDIES 186

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
                 ++IGPEGG+   E E   +      + LG R L  DTA    +A  QA+
Sbjct: 187 SSKPAVVMIGPEGGFVPFEIELAETK-IARSVHLGGRTLSVDTAVTTVLA--QAL 238


>gi|224002613|ref|XP_002290978.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972754|gb|EED91085.1| hypothetical protein THAPSDRAFT_269028 [Thalassiosira pseudonana
           CCMP1335]
          Length = 147

 Score = 59.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 17/119 (14%)

Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC-------GSENSLEKLHAIA----- 185
             I   P I+    L+ +    D   +++   E            + ++++  I      
Sbjct: 25  SHIFRNPEIFMEDELDEIF-PPDEFVRVIAHPERKSVDGEVIAEGDKVKRMTDIEFPMDG 83

Query: 186 --HIPNVAILIGPEGGYHSE-EKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241
                 + + +GPEGG+    E +   +  F   ++LG R+LRSD A V+ +AL   +C
Sbjct: 84  TGQPRKLLVAVGPEGGWEEPFELDMFTNKGF-KKITLGTRVLRSDVAVVSLLALAHEVC 141


>gi|299473302|emb|CBN77701.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 450

 Score = 59.1 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 189 NVAILIGPEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDTA--AVAAMA 235
            V + +GPEGG+   +E + L S  F   ++LG R+LRSD A  A+ A+A
Sbjct: 376 GVLVAVGPEGGWVEPDELQLLQSFGF-QAVTLGSRVLRSDVAVNALLALA 424


>gi|301168131|emb|CBW27718.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 237

 Score = 58.0 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 54  WLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVI 113
           + ++I  +  ++  +++ + + ++       +    +   +  +++ S  +G  +I    
Sbjct: 50  YKAEIIKLN-NLTCEIKVKEQLKSLSQWFHLLVGLSRPQTIKKVLEHSTTLGAKSIHLFK 108

Query: 114 T-----RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA 168
                  Y+Q++ Y  +  ++Y I    Q         +       L +   H  +    
Sbjct: 109 ALLSEKSYSQSSIYRDENYKSYLIDGLAQSKTYFELPEFSLKNYLNLDQYKAHKNKFYL- 167

Query: 169 DETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227
             +  +E + ++L          + IGPE G+   E+E L    F +P+ +    LR +
Sbjct: 168 --SLNTEQTFKELSPGERDEP-LLAIGPERGWTRAEEEKLKEAGF-SPIKISHSTLRVE 222


>gi|225375402|ref|ZP_03752623.1| hypothetical protein ROSEINA2194_01027 [Roseburia inulinivorans
          DSM 16841]
 gi|225212738|gb|EEG95092.1| hypothetical protein ROSEINA2194_01027 [Roseburia inulinivorans
          DSM 16841]
          Length = 66

 Score = 58.0 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 7  LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLF--NGK 50
          + + F++     +      G   +++ +VLRMK G+ I +   NG+
Sbjct: 14 MYQFFIEDENAAEDFVTIEGSDVNHIKNVLRMKPGEKIRVCTRNGQ 59


>gi|153880552|ref|ZP_02005003.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152062984|gb|EDN64997.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 46

 Score = 58.0 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
              E E   +  +   +  G RILR++TAA A +A+ Q + GD
Sbjct: 2   TETEIELAKTAGY-QEIRFGTRILRTETAATAILAVCQTLWGD 43


>gi|145344330|ref|XP_001416688.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576914|gb|ABO94981.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 260

 Score = 57.6 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 63/213 (29%), Gaps = 12/213 (5%)

Query: 21  QGKASGDQYH--YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK 78
                 D     +   VLR   GD++       G   + I+ +                 
Sbjct: 42  TVTLRADDARATHAREVLRSDVGDHVRAGTIDVGACEATIATMDDDEIVLKLGDDARGRG 101

Query: 79  QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN-----THYNMDRVRTYTIS 133
           + ++  + +  +   L  +      +G+G +     +  +         + + +R   + 
Sbjct: 102 RPEIDLLLATPRPKVLRRLWAPLASLGLGRVVLANAQKVERYYFDSKALDAETIRGEILR 161

Query: 134 AAEQCDILTLPFIYPPTTL----EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN 189
             EQ     +P +     L    + L     ++      +        L      A    
Sbjct: 162 GLEQAGDFLVPQVGVAMRLPPVVDRLKGALGNSSVTNGFEWLLDGPRELALEGVDARRSR 221

Query: 190 VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222
           V I +GPEGG+   E +      F   + LG R
Sbjct: 222 VLIAVGPEGGWTDYELDLFEGAGF-KRVGLGTR 253


>gi|167837896|ref|ZP_02464779.1| hypothetical protein Bpse38_15512 [Burkholderia thailandensis
           MSMB43]
          Length = 125

 Score = 57.2 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 142 TLPFIYPPTTLEFLLKNWDH-----NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196
            +P + P    +  L            +++ +            L       +V +LIGP
Sbjct: 1   RVPDVAPVRGFDAWLDALPAAPAEGELRLLLSPRASV---PFALLPDAPPAGDVTLLIGP 57

Query: 197 EGGYHSEEKETLHSLP 212
           EGG   +E+    +  
Sbjct: 58  EGGLSPDEERAARAGG 73


>gi|183220982|ref|YP_001838978.1| hypothetical protein LEPBI_I1595 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911077|ref|YP_001962632.1| hypothetical protein LBF_1544 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775753|gb|ABZ94054.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779404|gb|ABZ97702.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 238

 Score = 56.4 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 80/226 (35%), Gaps = 19/226 (8%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEY 71
           +  L  +        ++ ++  +L+   GD++ +     G +  +I  + +S    + E 
Sbjct: 8   EEELNTEKIVSLRDKRHQHIKSILKKNPGDSLQVVIPNLGNFFFRIIEIHESYSTLEREK 67

Query: 72  QSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN-------M 124
             +++ +   +   FS  +      ++  +   G   I+ +    T+  +          
Sbjct: 68  SLQTELEPLPIHCFFSLPRPQTAKKILHLA---GAYGIQSLSFFATETKNKEYWTSPVYT 124

Query: 125 DRVRTYTISAAEQCDILTLPFI--YPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLH 182
                +  +   Q      P I        +  L++W     ++   +  G  +S     
Sbjct: 125 KEWIDWIETGMSQTGNNRTPKIIFGQNQNWKPYLESWQGEVIVL---DRMGDLDSKTMAQ 181

Query: 183 AIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI-LRSD 227
           +I        + GPE G+  ++ +      ++   +LG RI LR++
Sbjct: 182 SIGSEKQSLFVFGPESGWKPDDLDFFSKRKYLLH-TLG-RINLRTE 225


>gi|213417362|ref|ZP_03350504.1| hypothetical protein Salmonentericaenterica_05392 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 38

 Score = 54.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 215 TPLSLGPRILRSDTAAVAAMALVQAICGD 243
           T + LGPR+LR++T A+ A+  +Q   GD
Sbjct: 8   TDILLGPRVLRTETTALTAITALQVRFGD 36


>gi|321443915|gb|EFX60233.1| hypothetical protein DAPPUDRAFT_344533 [Daphnia pulex]
          Length = 63

 Score = 53.0 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 8  KRLFVDFPL----CIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK 63
           R +VD  L       ++         +   VLR++ G  + LF+G   EW +++  +G+
Sbjct: 3  PRFYVDQLLGPSSSEPSELSLPPSAARH-VQVLRLQPGSPLTLFDGSGAEWQAEVLAMGR 61

Query: 64 S 64
          S
Sbjct: 62 S 62


>gi|315303209|ref|ZP_07873865.1| YqeU [Listeria ivanovii FSL F6-596]
 gi|313628424|gb|EFR96901.1| YqeU [Listeria ivanovii FSL F6-596]
          Length = 47

 Score = 52.6 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 202 SEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDWY 245
            +E         V    LGPRILR++TA +  ++       D Y
Sbjct: 1   EKEL-FFMQEKGVKLAGLGPRILRTETAPLYVLSATSFYF-DLY 42


>gi|169836552|ref|ZP_02869740.1| hypothetical protein cdivTM_05505 [candidate division TM7
           single-cell isolate TM7a]
          Length = 70

 Score = 52.2 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
           +    I     L  +  ++    +I+FA E  G   SL ++       N+  +IGPEGG 
Sbjct: 1   MKFTEITSVKRLSEI--DYQKYDKIIFAYENSGESKSLSEIIK-KEDKNILYIIGPEGGI 57

Query: 201 HSEEKETLH 209
            ++E + L 
Sbjct: 58  TADEVDFLK 66


>gi|325521338|gb|EGD00190.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. TJI49]
          Length = 44

 Score = 51.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDT 228
             +E+    +  F T LSLGPR+LR++T
Sbjct: 2   SPDEENAARAHGF-TALSLGPRVLRTET 28


>gi|95007403|emb|CAJ20623.1| hypothetical protein TgIb.1500c [Toxoplasma gondii RH]
          Length = 188

 Score = 50.3 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 22  GKASGDQYHYLAHVLRMKEGD--NILLFNGKDGEWLSKISYVGK---SIRFKVE---YQS 73
              +G    +   VL+++ G    + +FNG  G   + +  V +   S++  +E    + 
Sbjct: 43  VDLTGLAAQHCFSVLKVQVGSSLKVGVFNG--GICSANVVAVNQHPLSVQIHLERDIARE 100

Query: 74  RSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
            S +    +  + +  +   LD ++Q S  +G+G +  V +   + 
Sbjct: 101 PSASPAPLIDLLLAIPRPKTLDKILQVSATLGVGRLLLVCSERVEK 146


>gi|325529345|gb|EGD06278.1| 16S ribosomal RNA methyltransferase RsmE [Burkholderia sp. TJI49]
          Length = 47

 Score = 48.4 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 5  SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNI 44
          + + R FV+  L          +   + A VLR++ GD +
Sbjct: 8  AAVPRFFVEAALRADATLTLPAEVARH-AQVLRLQPGDAL 46


>gi|297185079|gb|ADI21188.1| hypothetical protein [uncultured gamma proteobacterium
          EB750_07C09]
          Length = 89

 Score = 48.4 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 15/95 (15%)

Query: 1  MKIHSHL---KRLFVDFPLCIKTQGKASGDQYHYLA--HVLRMKEGDNILLFNGKDGEWL 55
          M+ +  L   +R+ ++  L I  +          L   HVLR+K+ + I +FNG   E++
Sbjct: 1  MR-NHRLFLNQRIHLNKELKINQKKTX-------LFKXHVLRLKKEEKITIFNGTGCEFI 52

Query: 56 SKISYVGKSIRFK--VEYQSRSQTKQSDVQYIFSP 88
          + I  + +S      V+   R+      +      
Sbjct: 53 ALIIQIKRSEITLKPVKKVYRNVESPFYIHLAQGI 87


>gi|67591903|ref|XP_665601.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656365|gb|EAL35370.1| hypothetical protein Chro.60249 [Cryptosporidium hominis]
          Length = 239

 Score = 48.0 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 70  EYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRT 129
            ++ + +     +  + +  +    + ++Q +V +G+G I  V T  ++ ++ N  +++ 
Sbjct: 144 IHKEKYKDDYPLIDLLIALPRPKVFEKVLQNAVTIGVGRIIFVCTDKSEKSYLNSSKLKK 203

Query: 130 -----YTISAAEQCDILTLPFIYPPTTLEFLL 156
                      EQ      P +Y   +  F L
Sbjct: 204 ESIDEIVQLGLEQASKTLCPDVYVYASWTFFL 235


>gi|68005786|ref|XP_670143.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56485121|emb|CAI02714.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 199

 Score = 45.7 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 134 AAEQCDILTLPFIYPPTTLEFLLKN----WDHNCQIVFADETCGSENSLEKLHAI--AHI 187
           A  Q    +   +Y   TL     N     D N   V A      +N     ++I     
Sbjct: 2   AIRQAMCTSFAKVYMHYTLTSFAMNIQNYCDENTIKVCAHTDIKKKNEHPIEYSILNKEK 61

Query: 188 PNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229
             + +++G E G+   E   L  L F   L+L  RIL+ +TA
Sbjct: 62  GKILLMLGCERGFSDLEIYLLQKLNF-NFLNLSERILKCETA 102


>gi|255074457|ref|XP_002500903.1| predicted protein [Micromonas sp. RCC299]
 gi|226516166|gb|ACO62161.1| predicted protein [Micromonas sp. RCC299]
          Length = 353

 Score = 42.6 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222
              + +GPEGG+   E+ +L    FV  ++LG R
Sbjct: 299 RAVVAVGPEGGWTDFERRSLLDAGFVE-VALGRR 331


>gi|328862392|gb|EGG11493.1| hypothetical protein MELLADRAFT_91067 [Melampsora larici-populina
           98AG31]
          Length = 714

 Score = 41.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 38  MKEGDNILL------FNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT 91
           M+ G+ I L       +G+ G+W+ K+  VG S+R K + + R Q +      + S  K 
Sbjct: 168 MRVGEVITLAGEVVNMSGRGGKWIVKVVTVGDSVRCKKDEKIRKQNQPGGPCALGSLAKP 227

Query: 92  NR 93
           +R
Sbjct: 228 DR 229


>gi|2765835|emb|CAB09655.1| hypothetical protein [Acinetobacter haemolyticus]
          Length = 158

 Score = 39.9 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 28  QYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS 87
           Q  +L   L++  GD + +    +  +L+++ YV +        +  +  ++  V  I +
Sbjct: 24  QLKHLQQHLQLSVGDTLKIGVRNEQRYLTEVLYVSEQRIIVKPIRVEAIPEKLPVHLILA 83

Query: 88  PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQCDILTLP 144
             +   L  M+  +V +G+  I  + +     +++    + ++  Y     EQ      P
Sbjct: 84  LPRPKVLRRMVMDAVTLGVERISLIHSYRVDKSYWQTPFLQQLDDYVTLGLEQAGDPIAP 143

Query: 145 FIYPPTTLEFLLKN 158
            I      +  +++
Sbjct: 144 EIQLYKRFKPFVED 157


>gi|303273034|ref|XP_003055878.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461962|gb|EEH59254.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 200

 Score = 39.9 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPF 213
            T    ++            + I +GPEGG+   E+ +L     
Sbjct: 110 RTERGLDAPPSPSRARAPARIVIAVGPEGGWTDRERASLIDEGG 153


>gi|294790472|ref|ZP_06755630.1| alcohol dehydrogenase, zinc-containing protein [Scardovia inopinata
           F0304]
 gi|294458369|gb|EFG26722.1| alcohol dehydrogenase, zinc-containing protein [Scardovia inopinata
           F0304]
          Length = 347

 Score = 38.7 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 31  YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSP-I 89
           + A V R++ GD +++  G     L  +          +   SR + +Q   +   +  I
Sbjct: 159 HAARVSRVQPGDTVVVM-GDGAVGLCGVISAKMMGAGHIIAMSRHEDRQKLAREFGATDI 217

Query: 90  KTNRLDYMIQKSVEM----GMGAI 109
              R D  + K +E+    G  A+
Sbjct: 218 VPERGDEAVAKVMELTDGNGADAV 241


>gi|114566264|ref|YP_753418.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337199|gb|ABI68047.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 425

 Score = 38.7 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 99  QKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           +K +EMG+  I  V T   Q    ++ R       A+      +   +    +L+ LL  
Sbjct: 204 EKVMEMGVDKI--VETWRKQMKRASLKRAERLVKVASRSVGRTSG-KVASEVSLQNLLAE 260

Query: 159 WDHNCQ 164
           +D  CQ
Sbjct: 261 YDLYCQ 266


>gi|114567265|ref|YP_754419.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338200|gb|ABI69048.1| transposase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 425

 Score = 38.7 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 99  QKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158
           +K +EMG+  I  V T   Q    ++ R       A+      +   +    +L+ LL  
Sbjct: 204 EKVMEMGVDKI--VETWRKQMKRASLKRAERLVKVASRSVGRTSG-KVASEVSLQNLLAE 260

Query: 159 WDHNCQ 164
           +D  CQ
Sbjct: 261 YDLYCQ 266


>gi|316935707|ref|YP_004110689.1| pyruvate kinase [Rhodopseudomonas palustris DX-1]
 gi|315603421|gb|ADU45956.1| pyruvate kinase [Rhodopseudomonas palustris DX-1]
          Length = 477

 Score = 37.6 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 16/153 (10%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK----QSDVQYIFSPIKTNR 93
           +K GD +LL +GK    + + +   +++   V     S  K          + +    +R
Sbjct: 118 LKVGDALLLDDGK-VRLICEETEGDRAVTRVVIGGKMSDRKGVSLPDTDLPMSAMTNKDR 176

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
            D  ++ + E G+     V   + Q     ++  R     AA       +  I  P  ++
Sbjct: 177 AD--LEAACETGID---WVALSFVQRAEDVVEAKRMIRGRAA------VMAKIEKPQAID 225

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            L    D +  ++ A    G E  LE++ ++  
Sbjct: 226 RLQDILDVSDALMVARGDLGVEMPLERVPSLQK 258


>gi|299822746|ref|ZP_07054632.1| acetylornithine transaminase [Listeria grayi DSM 20601]
 gi|299816275|gb|EFI83513.1| acetylornithine transaminase [Listeria grayi DSM 20601]
          Length = 383

 Score = 37.6 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 29/129 (22%)

Query: 128 RTYTISAAEQCDILTLPFIYPPTTLEFL-LKNWDHNCQI-VFADETCGSENSLEKLHAIA 185
               ++AA+Q     L  I  P  LE L +K  D   Q+        GSE   +      
Sbjct: 267 NKIALAAAKQ----VLTEIDQPAFLEELNIKAADFKKQLTALVKGLPGSEVRGKGFLLGI 322

Query: 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR-----SDT----AAVAAMAL 236
            +P      GP     ++E         +  LS GP +LR     + T    AA  A+A+
Sbjct: 323 ELP------GP-----ADEVIAACRENGLLVLSAGPNVLRILPPLTATEEEIAA--ALAI 369

Query: 237 VQ-AICGDW 244
           +  A+   W
Sbjct: 370 LNDALLEKW 378


>gi|23013160|ref|ZP_00053093.1| COG0469: Pyruvate kinase [Magnetospirillum magnetotacticum MS-1]
          Length = 448

 Score = 36.8 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 25/192 (13%)

Query: 11  FVD--FPLCIKTQGKASGDQYHYLAHVLR-----------MKEGDNILLFNGKDGEWL-- 55
           FVD    L      +   D    L   LR           +K G  +L+ +GK    +  
Sbjct: 42  FVDGRARLEAGAVFRLDMDDA--LGTALRAPLHHPEVFAALKPGSELLIDDGKLRLAVES 99

Query: 56  SKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPI-KTNRLDYMIQKSVEMGMGAIRPVIT 114
               +    +    E  +       +V    SP+ + +R D  ++ +VEMG   I     
Sbjct: 100 CGPDFAETRVVVGGEISNHKGVNVPNVMLPISPLTEKDRRD--LEFAVEMGADWIALSFV 157

Query: 115 RYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGS 174
           +    +     R             +  L  +  P+ +E L    + +  ++ A    G 
Sbjct: 158 QR--PSDVQEARKLIAAYVG---SRVRILSKLEKPSAIEHLASIIEWSDAVMVARGDLGV 212

Query: 175 ENSLEKLHAIAH 186
           E   E +  +  
Sbjct: 213 ECPPETVPILQK 224


>gi|224059357|ref|XP_002299833.1| predicted protein [Populus trichocarpa]
 gi|224098531|ref|XP_002334547.1| predicted protein [Populus trichocarpa]
 gi|222847091|gb|EEE84638.1| predicted protein [Populus trichocarpa]
 gi|222873214|gb|EEF10345.1| predicted protein [Populus trichocarpa]
          Length = 136

 Score = 36.8 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 42  DNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK 100
           + + L +G  G +L   +S   K+I  K+             Q   + I  ++ +    K
Sbjct: 16  EAVELRDGDKGRYLGNSVSRAVKNINEKISEALIDMDPALQSQIDQAMIDLDKTEN---K 72

Query: 101 SVEMGMGAIRPVITRYT 117
             E+G  AI  + T  T
Sbjct: 73  G-ELGANAITWIGTLCT 88


>gi|308187912|ref|YP_003932043.1| Transposase B from transposon Tn554 [Pantoea vagans C9-1]
 gi|308058422|gb|ADO10594.1| Transposase B from transposon Tn554 [Pantoea vagans C9-1]
          Length = 612

 Score = 36.8 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 13  DFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFN 48
           +  L   +  +  GD + +L+ VL MK+ D+I++ N
Sbjct: 566 NPELPDGSLVRTHGDDFSHLSRVLEMKKDDSIIINN 601


>gi|160894583|ref|ZP_02075359.1| hypothetical protein CLOL250_02135 [Clostridium sp. L2-50]
 gi|156863894|gb|EDO57325.1| hypothetical protein CLOL250_02135 [Clostridium sp. L2-50]
          Length = 189

 Score = 36.8 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 32 LAHVLRMKEGDNILLFNGKDGEWL 55
          +  VLR++EGD + +F GKDGE +
Sbjct: 30 IRRVLRIREGDPLEIFTGKDGEVI 53


>gi|317037025|ref|XP_001398262.2| integral membrane protein [Aspergillus niger CBS 513.88]
          Length = 623

 Score = 36.8 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------NSLEKLHAIAHIPNVAI 192
           +      + PP+ +  L    D       ADE    E      ++L  +      P  A+
Sbjct: 240 NRNQTYTLSPPSPMRELESTSDEER----ADEIKEPEVRPSIEHTLTSVIGEGEEPRFAV 295

Query: 193 LIGPEG----GYHSEEKETLHSL 211
           L  PEG    G+  EE E L+  
Sbjct: 296 L--PEGSNLAGWSPEEIEELNDH 316


>gi|134083829|emb|CAK97393.1| unnamed protein product [Aspergillus niger]
          Length = 618

 Score = 36.8 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE------NSLEKLHAIAHIPNVAI 192
           +      + PP+ +  L    D       ADE    E      ++L  +      P  A+
Sbjct: 240 NRNQTYTLSPPSPMRELESTSDEER----ADEIKEPEVRPSIEHTLTSVIGEGEEPRFAV 295

Query: 193 LIGPEG----GYHSEEKETLHSL 211
           L  PEG    G+  EE E L+  
Sbjct: 296 L--PEGSNLAGWSPEEIEELNDH 316


>gi|322827689|gb|EFZ31755.1| hypothetical protein TCSYLVIO_1929 [Trypanosoma cruzi]
          Length = 707

 Score = 36.4 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 57  KISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSV----EMG-MGAIRP 111
            +    +     VE    +   + DV Y +S  K        +K+     E+  + A+  
Sbjct: 87  VLEEREREATCVVEEAKETNEYKEDVNYFYSIEKKE------EKATSLQEELERLNALHV 140

Query: 112 VIT--RYTQNTHYNMDRVRTYTISAAEQC--DILTLPFIYPPTTLEFLLKNWDHNCQIVF 167
           ++T  R+   +    +R+R     A  QC  + L +  +    T + LL +W     ++ 
Sbjct: 141 LLTAPRHMDTSLAKAERLRQEYRDAL-QCVFERLRVAVVDETMTFDALLYSW----FLLL 195

Query: 168 ADETCGSENSLEKLHAIAHIPNVAI 192
                G++  LE L          +
Sbjct: 196 ----QGAQPLLEALTERRKFDENTL 216


>gi|157369246|ref|YP_001477235.1| putative thiol-disulfide oxidoreductase DCC [Serratia
          proteamaculans 568]
 gi|157321010|gb|ABV40107.1| putative thiol-disulphide oxidoreductase DCC [Serratia
          proteamaculans 568]
          Length = 147

 Score = 36.4 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 30/61 (49%)

Query: 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYM 97
          ++ GD +LLF+G+       + ++ ++ R      +  Q+++      +  + T+R D +
Sbjct: 10 LQPGDRVLLFDGECNLCHGLVRFLIRADRQGKILLATVQSEEGQAILRWLVLPTDRFDSI 69

Query: 98 I 98
          +
Sbjct: 70 V 70


>gi|256821970|ref|YP_003145933.1| hypothetical protein Kkor_0745 [Kangiella koreensis DSM 16069]
 gi|256795509|gb|ACV26165.1| hypothetical protein Kkor_0745 [Kangiella koreensis DSM 16069]
          Length = 178

 Score = 36.4 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 7   LKRLFVDFPLCIKT----QGKASGDQYHYLAHVLR 37
           ++R F      ++     +   SG+ + +L+ VLR
Sbjct: 131 MRRFFQHKKQRLRQLLIFRDAVSGEDFRHLSRVLR 165


>gi|258542083|ref|YP_003187516.1| carbamoyl phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633161|dbj|BAH99136.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636218|dbj|BAI02187.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639273|dbj|BAI05235.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642327|dbj|BAI08282.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645382|dbj|BAI11330.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648437|dbj|BAI14378.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651490|dbj|BAI17424.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654481|dbj|BAI20408.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 1084

 Score = 36.4 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 27/109 (24%)

Query: 128 RTYTISAAEQCDI--LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA 185
               ++A  Q     L++  I+     E          +I+ A+    +    +   ++ 
Sbjct: 432 ERILMAA--QALRAGLSVDDIHEACKFEPWF--LREMEKIIHAEREVENHGLPKDAQSLR 487

Query: 186 HIPNVAILIGPEGGYH-----------SEEKETLHSLPFVTPLSLGPRI 223
            +  +        G+             EE   L +   VTP+    RI
Sbjct: 488 RLKAL--------GFSDVQLSRLSGTQPEEVAKLRAEAGVTPVY--KRI 526


>gi|116255742|ref|YP_771575.1| putative glycine degradation aminomethyltransferase [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|115260390|emb|CAK03494.1| putative glycine degradation aminomethyltransferase [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 789

 Score = 36.4 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 35 VLRMKEGDNILLFNGKDGEWLSKISYVGKSIRF 67
          V+R++ GD + + + + G+ L +IS++ +  RF
Sbjct: 43 VMRVEPGDRVSVIDSEGGQ-LCEISFLDEKGRF 74


>gi|254451351|ref|ZP_05064788.1| RNA polymerase sigma-70 factor, ECF subfamily [Octadecabacter
           antarcticus 238]
 gi|198265757|gb|EDY90027.1| RNA polymerase sigma-70 factor, ECF subfamily [Octadecabacter
           antarcticus 238]
          Length = 413

 Score = 36.0 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 117 TQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176
           +      +DR+R     A++Q +I  L  +      + +    D   +++F       E 
Sbjct: 66  SVAWRKAIDRIRRSANFASKQGEIAYLMELDRVAE-DKVEGFGDERLKMIFTCCHPALEE 124

Query: 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208
                  +  +          GG  +EE    
Sbjct: 125 KTRVALTLRTL----------GGLSTEEIAMA 146


>gi|254421004|ref|ZP_05034728.1| Amylo-alpha-1,6-glucosidase family [Brevundimonas sp. BAL3]
 gi|196187181|gb|EDX82157.1| Amylo-alpha-1,6-glucosidase family [Brevundimonas sp. BAL3]
          Length = 715

 Score = 35.6 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 24/150 (16%)

Query: 26  GDQYHYLAHVL---RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSD- 81
           G  +H +  V    R K G  +            +   + K  R      S    + +  
Sbjct: 140 GADFHDIFQVRGTHRAKRG-TVHTPTTDGRRVTFRYVGLDKVERSSCLAFSEPPARLTHQ 198

Query: 82  -VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAA--EQC 138
             +++FS  K   +D  I    E G+ +         +       R R   + A    + 
Sbjct: 199 RAEFMFSLPKGRSMDLFI----ECGVDS--------CETPDAR--RWRENAVQARLGMRA 244

Query: 139 DILTLPFIYPPTT--LEFLLKNWDHNCQIV 166
                  +  P +      L     +  ++
Sbjct: 245 KRRRGASVRGPRSPRFNDWLDQSRADMALL 274


>gi|168036426|ref|XP_001770708.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678069|gb|EDQ64532.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 407

 Score = 35.6 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 133 SAAEQ--CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNV 190
           SA  Q  C      F++ P   +  L   D     +   E+C S   L  +HA A +P  
Sbjct: 317 SARMQIRCGRGRGRFLFYPMRHDTALSMLDFAAVDLIPAESCASRFLLFAIHASAPVPPH 376

Query: 191 AILI 194
            I +
Sbjct: 377 RIFV 380


>gi|312198632|ref|YP_004018693.1| pyruvate kinase [Frankia sp. EuI1c]
 gi|311229968|gb|ADP82823.1| pyruvate kinase [Frankia sp. EuI1c]
          Length = 471

 Score = 35.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 13/152 (8%)

Query: 39  KEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFS----PIKTNRL 94
           K GD IL+ +G+    +  I  V  +            +    +    +    P  T++ 
Sbjct: 117 KTGDRILVDDGR---LVLTIDGVTDTDVHTTVVIGGPVSNNKGMNIPSAALTVPALTDKD 173

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
           +  ++ ++E+G+     ++      +  + ++VR     A     +  +  I  P  +  
Sbjct: 174 EEDLRYALELGVD----MVALSFVRSAADAEKVRKIMDEAGI--RVPVIAKIEKPQAVAE 227

Query: 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           L    +    ++ A    G E  LE +  +  
Sbjct: 228 LDGIVEAFDGLMVARGDLGVELPLEDVPLVQK 259


>gi|39937253|ref|NP_949529.1| pyruvate kinase [Rhodopseudomonas palustris CGA009]
 gi|192293034|ref|YP_001993639.1| pyruvate kinase [Rhodopseudomonas palustris TIE-1]
 gi|39651111|emb|CAE29634.1| pyruvate kinase [Rhodopseudomonas palustris CGA009]
 gi|192286783|gb|ACF03164.1| pyruvate kinase [Rhodopseudomonas palustris TIE-1]
          Length = 477

 Score = 35.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 16/153 (10%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK----QSDVQYIFSPIKTNR 93
           +K GD +LL +GK    + + +   +++   V     S  K          + +    +R
Sbjct: 118 LKVGDALLLDDGK-VRLICEETQGDRAVTRVVIGGKMSDRKGVSLPDTDLPMSAMTNKDR 176

Query: 94  LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
            D  ++ + E G+     V   + Q     ++  R     AA       +  I  P  ++
Sbjct: 177 AD--LEAACETGID---WVALSFVQRAEDVVEAKRMIRGRAA------VMAKIEKPQAID 225

Query: 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
            L    D +  ++ A    G E  LE++ ++  
Sbjct: 226 RLEDILDVSDALMVARGDLGVEMPLERVPSLQK 258


>gi|134081705|emb|CAK46639.1| hypothetical protein An14g04030 [Aspergillus niger]
          Length = 160

 Score = 35.6 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)

Query: 213 FVTPLSLGPR---ILRSDTAA 230
           F T +SLGPR   +LRS+TA 
Sbjct: 38  FRTEISLGPRRKYVLRSETAG 58


>gi|167721250|ref|ZP_02404486.1| hypothetical protein BpseD_19736 [Burkholderia pseudomallei DM98]
          Length = 44

 Score = 35.6 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 5  SHLKRLFVDFPLCIKTQGKASGDQYHYL 32
          + + R FVD  L          D   + 
Sbjct: 17 AAVPRFFVDAALRADATLALPADVARHA 44


>gi|24373204|ref|NP_717247.1| membrane-associated zinc metalloprotease, putative [Shewanella
           oneidensis MR-1]
 gi|24347425|gb|AAN54691.1|AE015609_10 membrane-associated zinc metalloprotease, putative [Shewanella
           oneidensis MR-1]
          Length = 456

 Score = 35.6 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 38  MKEGDNILLFNGKD-GEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKT--NRL 94
           +K GD ++  NG+   +W + +  +  S    VE   R   +Q  +    + IK    + 
Sbjct: 245 LKVGDTLVAINGQQYTDWQAFVDIIQHSANVPVELTVRRNGEQFAISVTPASIKNSDGK- 303

Query: 95  DYMIQKSVEMGMGAIRPVITRYTQNTHYNMD 125
                   E+G+  + P   ++ +N    ++
Sbjct: 304 --------EIGVLGVSPTQAQWPENMRLQLE 326


>gi|91975881|ref|YP_568540.1| pyruvate kinase [Rhodopseudomonas palustris BisB5]
 gi|91682337|gb|ABE38639.1| pyruvate kinase [Rhodopseudomonas palustris BisB5]
          Length = 477

 Score = 35.3 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 20/155 (12%)

Query: 38  MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTK----QSDVQYIFSPIKTNR 93
           +K GD +LL +GK    + + +   +++   V     S  K          + +    +R
Sbjct: 118 LKVGDALLLDDGK-VRLICEEASHDRAVTRVVIGGKMSDRKGVSLPDTDLPVSAMTHKDR 176

Query: 94  LDYMIQKSVEMGMG--AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151
            D  ++ + E G+   A+  V           M R R   ++            I  P  
Sbjct: 177 AD--LEAACETGIDWVALSFVQRADDVAEAKRMIRGRAAVMA-----------KIEKPQA 223

Query: 152 LEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAH 186
           ++ L +  D +  ++ A    G E  LE++ ++  
Sbjct: 224 IDRLQEILDVSDALMVARGDLGVEMPLERVPSLQK 258


>gi|297822671|ref|XP_002879218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325057|gb|EFH55477.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 475

 Score = 35.3 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 42  DNILLFNGKDGEWLS-KISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQK 100
           + I L +G  G +L   +S   K+I  K+         +   Q   + I  ++ +    K
Sbjct: 89  EAIELRDGDKGMYLGNSVSKAVKNINEKISEALIGMDPKLQGQIDQAMIDLDKTE----K 144

Query: 101 SVEMGMGAI 109
             E+G  AI
Sbjct: 145 KSELGANAI 153


>gi|284046576|ref|YP_003396916.1| oxidoreductase alpha (molybdopterin) subunit [Conexibacter woesei
           DSM 14684]
 gi|283950797|gb|ADB53541.1| oxidoreductase alpha (molybdopterin) subunit [Conexibacter woesei
           DSM 14684]
          Length = 766

 Score = 35.3 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 104 MGMG--AIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153
           +G+   AI  V++ +       ++R R      A  C     P   P   L+
Sbjct: 692 LGVADGAIVDVVSEWEDGVERRVERFRAVAYPTARGCAAAYYPETNPLVPLD 743


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.196    0.670 

Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,865,873,222
Number of Sequences: 14124377
Number of extensions: 311339744
Number of successful extensions: 840136
Number of sequences better than 10.0: 2457
Number of HSP's better than 10.0 without gapping: 2961
Number of HSP's successfully gapped in prelim test: 1708
Number of HSP's that attempted gapping in prelim test: 823849
Number of HSP's gapped (non-prelim): 4861
length of query: 245
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 110
effective length of database: 2,936,002,735
effective search space: 322960300850
effective search space used: 322960300850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 81 (35.3 bits)